Query 036466
Match_columns 727
No_of_seqs 264 out of 3866
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 22:27:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036466.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036466hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 2.1E-39 7.1E-44 357.8 18.6 315 52-396 131-472 (549)
2 1vt4_I APAF-1 related killer D 100.0 2.3E-32 7.9E-37 303.7 23.9 286 49-388 128-436 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 2.9E-32 1E-36 334.2 21.1 317 42-395 117-452 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 1.4E-30 4.8E-35 292.2 24.0 311 43-393 118-450 (591)
5 3rgz_A Protein brassinosteroid 99.9 1.6E-25 5.4E-30 258.5 17.8 286 429-716 393-766 (768)
6 1ogq_A PGIP-2, polygalacturona 99.9 1.8E-25 6.2E-30 229.1 13.7 251 430-696 50-306 (313)
7 3rgz_A Protein brassinosteroid 99.9 1.8E-24 6E-29 249.7 19.1 299 403-723 343-717 (768)
8 3v47_A TOLL-like receptor 5B a 99.9 1.2E-23 4.1E-28 228.5 21.9 312 403-724 30-409 (455)
9 2id5_A Lingo-1, leucine rich r 99.9 1.9E-23 6.4E-28 228.2 23.4 272 403-691 32-306 (477)
10 4ecn_A Leucine-rich repeat pro 99.9 2.4E-23 8.1E-28 238.4 20.4 159 422-583 440-630 (876)
11 3v47_A TOLL-like receptor 5B a 99.9 3.4E-23 1.2E-27 224.9 20.0 277 403-694 54-408 (455)
12 4fcg_A Uncharacterized protein 99.9 1.3E-23 4.6E-28 216.5 15.3 222 428-690 79-310 (328)
13 4eco_A Uncharacterized protein 99.9 2.2E-23 7.4E-28 234.9 16.1 266 422-693 198-525 (636)
14 2id5_A Lingo-1, leucine rich r 99.9 1.7E-22 5.8E-27 220.7 20.9 251 430-693 32-284 (477)
15 3t6q_A CD180 antigen; protein- 99.9 1.2E-22 4.2E-27 229.0 20.0 258 421-692 269-534 (606)
16 4fcg_A Uncharacterized protein 99.9 1.4E-22 4.9E-27 208.7 17.4 222 403-667 81-311 (328)
17 1ogq_A PGIP-2, polygalacturona 99.9 7.7E-23 2.6E-27 209.5 14.6 255 403-674 50-308 (313)
18 4eco_A Uncharacterized protein 99.9 1.4E-22 4.9E-27 228.2 17.4 269 430-723 305-600 (636)
19 1xku_A Decorin; proteoglycan, 99.9 1.7E-21 5.7E-26 201.7 23.5 241 431-692 32-274 (330)
20 4ecn_A Leucine-rich repeat pro 99.9 3.7E-22 1.3E-26 228.6 18.5 266 422-693 481-818 (876)
21 3t6q_A CD180 antigen; protein- 99.9 2.3E-21 7.8E-26 218.6 24.0 251 431-694 255-513 (606)
22 3j0a_A TOLL-like receptor 5; m 99.9 1.9E-21 6.6E-26 226.7 23.4 284 403-691 24-348 (844)
23 4fmz_A Internalin; leucine ric 99.9 2.9E-21 1E-25 201.5 21.8 264 426-724 84-347 (347)
24 3zyi_A Leucine-rich repeat-con 99.9 4.6E-21 1.6E-25 207.4 21.8 245 432-693 56-302 (452)
25 2ft3_A Biglycan; proteoglycan, 99.9 3.9E-21 1.3E-25 199.1 20.1 244 430-694 54-307 (332)
26 3oja_B Anopheles plasmodium-re 99.9 1.5E-21 5E-26 218.8 18.2 259 421-692 66-335 (597)
27 3j0a_A TOLL-like receptor 5; m 99.9 4.8E-21 1.6E-25 223.4 22.7 255 428-693 22-326 (844)
28 2z66_A Variable lymphocyte rec 99.9 2.8E-21 9.4E-26 197.8 18.3 245 433-693 10-260 (306)
29 3zyj_A Leucine-rich repeat-con 99.9 5E-21 1.7E-25 206.3 21.1 246 432-694 45-292 (440)
30 3o6n_A APL1; leucine-rich repe 99.9 2.7E-21 9.3E-26 205.1 18.4 273 403-692 45-329 (390)
31 3vq2_A TLR4, TOLL-like recepto 99.9 2.1E-21 7E-26 218.9 17.8 254 425-695 302-559 (606)
32 2z7x_B TOLL-like receptor 1, v 99.9 6.5E-21 2.2E-25 210.6 20.8 279 403-692 21-410 (520)
33 3vq2_A TLR4, TOLL-like recepto 99.9 1.6E-21 5.6E-26 219.8 16.0 272 426-723 281-558 (606)
34 4fmz_A Internalin; leucine ric 99.9 9.4E-21 3.2E-25 197.7 20.1 259 402-693 87-345 (347)
35 2z7x_B TOLL-like receptor 1, v 99.9 6.7E-21 2.3E-25 210.5 18.9 103 403-513 45-150 (520)
36 3o6n_A APL1; leucine-rich repe 99.9 1.1E-20 3.7E-25 200.5 19.3 266 403-696 69-354 (390)
37 3oja_B Anopheles plasmodium-re 99.9 7.7E-21 2.6E-25 212.9 18.9 266 403-696 75-360 (597)
38 1xku_A Decorin; proteoglycan, 99.8 2.1E-20 7.2E-25 193.4 19.9 268 430-720 52-329 (330)
39 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 3.2E-20 1.1E-24 206.7 22.6 126 403-536 52-181 (562)
40 2z63_A TOLL-like receptor 4, v 99.8 2E-20 6.9E-25 209.3 20.9 173 545-724 344-532 (570)
41 2z80_A TOLL-like receptor 2, v 99.8 7.4E-21 2.5E-25 198.8 15.3 253 430-694 52-314 (353)
42 3bz5_A Internalin-J, INLJ; leu 99.8 1.6E-19 5.3E-24 194.5 25.2 207 402-647 41-247 (457)
43 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 2.3E-20 8E-25 207.9 19.3 103 403-513 76-181 (562)
44 2ft3_A Biglycan; proteoglycan, 99.8 3.3E-20 1.1E-24 192.0 18.4 266 403-692 54-331 (332)
45 1ziw_A TOLL-like receptor 3; i 99.8 7E-20 2.4E-24 209.3 22.8 259 403-667 25-306 (680)
46 1ozn_A Reticulon 4 receptor; N 99.8 5.2E-20 1.8E-24 186.1 18.3 249 429-691 31-284 (285)
47 2z81_A CD282 antigen, TOLL-lik 99.8 1.7E-20 5.7E-25 208.9 15.4 178 403-584 26-208 (549)
48 1ziw_A TOLL-like receptor 3; i 99.8 5.8E-20 2E-24 210.0 19.4 261 430-691 25-306 (680)
49 2z81_A CD282 antigen, TOLL-lik 99.8 1.9E-20 6.5E-25 208.4 14.8 286 402-692 49-421 (549)
50 2z66_A Variable lymphocyte rec 99.8 5.4E-20 1.9E-24 188.2 16.7 229 430-672 28-263 (306)
51 3o53_A Protein LRIM1, AGAP0063 99.8 7.3E-21 2.5E-25 195.4 9.5 253 419-697 23-278 (317)
52 2z63_A TOLL-like receptor 4, v 99.8 2.8E-20 9.6E-25 208.2 14.6 253 422-694 274-531 (570)
53 1o6v_A Internalin A; bacterial 99.8 2.4E-19 8.3E-24 194.7 21.2 273 426-723 64-366 (466)
54 2z80_A TOLL-like receptor 2, v 99.8 2.5E-20 8.6E-25 194.7 12.4 254 403-673 52-317 (353)
55 3zyj_A Leucine-rich repeat-con 99.8 1.8E-19 6.2E-24 194.1 19.3 226 430-670 64-292 (440)
56 3zyi_A Leucine-rich repeat-con 99.8 1.6E-19 5.4E-24 195.3 18.5 226 430-670 75-303 (452)
57 1o6v_A Internalin A; bacterial 99.8 5.6E-19 1.9E-23 191.8 22.1 264 426-724 86-389 (466)
58 1ozn_A Reticulon 4 receptor; N 99.8 3.9E-19 1.3E-23 179.7 17.8 224 432-670 13-238 (285)
59 3oja_A Leucine-rich immune mol 99.8 7.9E-20 2.7E-24 198.7 11.8 238 427-690 31-271 (487)
60 1wwl_A Monocyte differentiatio 99.8 2.3E-21 7.9E-26 198.6 -0.3 247 428-692 41-307 (312)
61 3bz5_A Internalin-J, INLJ; leu 99.8 1.2E-18 4.2E-23 187.5 20.4 211 425-671 37-247 (457)
62 3o53_A Protein LRIM1, AGAP0063 99.8 3.4E-19 1.2E-23 182.9 10.9 240 430-695 10-251 (317)
63 4g8a_A TOLL-like receptor 4; l 99.8 3.8E-18 1.3E-22 193.6 20.6 95 599-695 486-581 (635)
64 4g8a_A TOLL-like receptor 4; l 99.8 6.4E-18 2.2E-22 191.7 21.6 130 403-535 52-184 (635)
65 3oja_A Leucine-rich immune mol 99.8 7.2E-19 2.5E-23 191.1 12.8 221 450-696 31-252 (487)
66 1wwl_A Monocyte differentiatio 99.7 1.7E-18 5.7E-23 177.3 10.0 222 432-671 65-310 (312)
67 2z62_A TOLL-like receptor 4, v 99.7 1.7E-17 5.9E-22 166.7 16.6 131 431-561 29-162 (276)
68 3rfs_A Internalin B, repeat mo 99.7 3.7E-17 1.3E-21 163.7 17.5 212 427-685 38-250 (272)
69 2ast_B S-phase kinase-associat 99.7 9.1E-19 3.1E-23 181.7 5.2 226 430-692 70-304 (336)
70 1p9a_G Platelet glycoprotein I 99.7 5.4E-17 1.8E-21 163.7 18.0 201 426-645 6-207 (290)
71 3g06_A SSPH2 (leucine-rich rep 99.7 7.1E-17 2.4E-21 178.9 20.2 218 429-694 80-297 (622)
72 1p9a_G Platelet glycoprotein I 99.7 4.6E-17 1.6E-21 164.2 17.1 203 449-670 6-208 (290)
73 1z7x_W Ribonuclease inhibitor; 99.7 1.6E-19 5.4E-24 196.4 -1.4 308 404-720 86-437 (461)
74 1z7x_W Ribonuclease inhibitor; 99.7 2.1E-19 7.3E-24 195.3 -0.8 162 421-582 47-237 (461)
75 2ca6_A RAN GTPase-activating p 99.7 1.4E-19 4.7E-24 191.6 -2.7 266 418-690 20-339 (386)
76 2z62_A TOLL-like receptor 4, v 99.7 7.2E-17 2.5E-21 162.1 17.3 223 434-672 11-239 (276)
77 2o6q_A Variable lymphocyte rec 99.7 1.3E-16 4.3E-21 159.6 18.8 150 431-582 17-167 (270)
78 2ast_B S-phase kinase-associat 99.7 2.2E-18 7.6E-23 178.8 6.2 158 426-583 89-258 (336)
79 3g06_A SSPH2 (leucine-rich rep 99.7 1.4E-16 4.9E-21 176.5 20.8 238 430-724 61-298 (622)
80 2o6q_A Variable lymphocyte rec 99.7 1.3E-16 4.3E-21 159.7 18.5 200 453-668 16-216 (270)
81 2qen_A Walker-type ATPase; unk 99.7 2.3E-16 7.7E-21 164.7 20.3 299 45-389 8-349 (350)
82 1jl5_A Outer protein YOPM; leu 99.7 2.8E-17 9.5E-22 176.8 13.5 253 421-724 25-291 (454)
83 2ca6_A RAN GTPase-activating p 99.7 2.8E-18 9.7E-23 181.5 3.8 249 437-693 16-315 (386)
84 1jl5_A Outer protein YOPM; leu 99.7 1.6E-15 5.4E-20 163.1 23.5 225 430-693 131-369 (454)
85 1w5s_A Origin recognition comp 99.7 6.7E-16 2.3E-20 164.9 20.3 312 45-367 18-372 (412)
86 2xwt_C Thyrotropin receptor; s 99.7 1.6E-16 5.3E-21 155.9 13.1 197 454-693 32-238 (239)
87 1h6u_A Internalin H; cell adhe 99.7 3.3E-16 1.1E-20 159.6 15.3 146 427-582 38-183 (308)
88 3rfs_A Internalin B, repeat mo 99.7 2.2E-16 7.6E-21 158.0 13.4 206 403-658 41-247 (272)
89 2fna_A Conserved hypothetical 99.7 2.4E-15 8.2E-20 157.3 21.6 292 46-388 10-356 (357)
90 4glp_A Monocyte differentiatio 99.7 4.1E-16 1.4E-20 159.4 14.1 221 431-692 65-305 (310)
91 4glp_A Monocyte differentiatio 99.7 3.8E-16 1.3E-20 159.6 13.2 140 429-569 90-245 (310)
92 1h6u_A Internalin H; cell adhe 99.7 9.9E-16 3.4E-20 156.1 15.1 195 449-671 37-231 (308)
93 3goz_A Leucine-rich repeat-con 99.6 8.8E-17 3E-21 168.2 6.0 245 421-672 13-299 (362)
94 4ay9_X Follicle-stimulating ho 99.6 4.1E-15 1.4E-19 154.7 18.3 238 433-690 12-255 (350)
95 3ogk_B Coronatine-insensitive 99.6 1.1E-16 3.8E-21 179.7 5.7 269 421-692 211-524 (592)
96 2xwt_C Thyrotropin receptor; s 99.6 2.5E-15 8.5E-20 147.3 14.3 198 430-668 31-237 (239)
97 3m19_A Variable lymphocyte rec 99.6 1E-14 3.4E-19 144.1 16.0 177 478-670 15-192 (251)
98 3ogk_B Coronatine-insensitive 99.6 6.1E-17 2.1E-21 181.9 -0.2 264 426-692 188-499 (592)
99 3m19_A Variable lymphocyte rec 99.6 1.5E-14 5.1E-19 142.8 16.6 151 430-582 14-165 (251)
100 2o6s_A Variable lymphocyte rec 99.6 1.5E-14 5.2E-19 138.3 14.1 124 433-558 10-134 (208)
101 1fnn_A CDC6P, cell division co 99.6 6.4E-14 2.2E-18 148.3 19.5 308 47-367 15-352 (389)
102 4ay9_X Follicle-stimulating ho 99.6 1.4E-14 4.9E-19 150.5 13.8 221 430-668 30-257 (350)
103 3cvr_A Invasion plasmid antige 99.5 1.9E-14 6.5E-19 157.4 13.5 189 429-656 58-253 (571)
104 3goz_A Leucine-rich repeat-con 99.5 2.2E-16 7.6E-21 165.1 -2.4 253 434-694 2-297 (362)
105 2qby_B CDC6 homolog 3, cell di 99.5 2E-13 7E-18 144.1 20.0 299 47-367 18-340 (384)
106 1h6t_A Internalin B; cell adhe 99.5 4.7E-14 1.6E-18 142.3 13.2 124 428-559 44-167 (291)
107 2v1u_A Cell division control p 99.5 5.3E-13 1.8E-17 141.1 21.4 302 47-367 17-352 (387)
108 1m9s_A Internalin B; cell inva 99.5 5.7E-14 2E-18 155.5 13.5 123 429-559 42-164 (605)
109 4ezg_A Putative uncharacterize 99.5 3.2E-14 1.1E-18 134.6 9.7 150 427-582 41-191 (197)
110 1m9s_A Internalin B; cell inva 99.5 1.2E-13 4.2E-18 152.8 15.6 188 431-645 22-209 (605)
111 2p1m_B Transport inhibitor res 99.5 8E-16 2.7E-20 172.9 -2.4 105 403-508 130-242 (594)
112 2p1m_B Transport inhibitor res 99.5 1.1E-15 3.9E-20 171.6 -1.9 93 603-697 428-522 (594)
113 1h6t_A Internalin B; cell adhe 99.5 1.8E-13 6.2E-18 138.0 14.0 137 436-582 30-166 (291)
114 2o6s_A Variable lymphocyte rec 99.5 4.4E-13 1.5E-17 128.1 15.1 181 455-682 9-190 (208)
115 2v9t_B SLIT homolog 2 protein 99.5 3.1E-13 1.1E-17 130.1 14.0 149 433-583 14-163 (220)
116 3cvr_A Invasion plasmid antige 99.5 2.9E-13 1E-17 148.0 15.5 188 453-680 59-253 (571)
117 4ezg_A Putative uncharacterize 99.5 3.5E-13 1.2E-17 127.4 12.8 128 450-582 41-169 (197)
118 2v70_A SLIT-2, SLIT homolog 2 99.4 7.1E-13 2.4E-17 127.6 13.6 149 433-583 14-164 (220)
119 1njg_A DNA polymerase III subu 99.4 1.9E-12 6.5E-17 127.4 16.8 190 48-264 22-231 (250)
120 3e6j_A Variable lymphocyte rec 99.4 9.5E-13 3.2E-17 127.6 14.0 150 431-583 20-170 (229)
121 1dce_A Protein (RAB geranylger 99.4 9E-16 3.1E-20 168.9 -8.4 203 450-688 346-567 (567)
122 2qby_A CDC6 homolog 1, cell di 99.4 1.8E-12 6.3E-17 136.9 15.3 302 44-366 15-348 (386)
123 2v9t_B SLIT homolog 2 protein 99.4 2.2E-12 7.5E-17 124.1 13.0 151 480-670 14-165 (220)
124 1xeu_A Internalin C; cellular 99.4 3.1E-13 1.1E-17 134.0 6.7 144 428-582 17-160 (263)
125 2chg_A Replication factor C sm 99.4 1E-11 3.5E-16 120.1 17.4 190 48-263 16-206 (226)
126 2xot_A Amphoterin-induced prot 99.4 2.1E-12 7.1E-17 134.7 13.2 128 432-561 20-149 (361)
127 2ell_A Acidic leucine-rich nuc 99.3 2E-12 6.9E-17 118.8 9.8 131 427-560 21-159 (168)
128 1xeu_A Internalin C; cellular 99.3 3.7E-12 1.3E-16 126.2 12.2 148 426-584 37-184 (263)
129 3e6j_A Variable lymphocyte rec 99.3 5.3E-12 1.8E-16 122.3 12.0 132 429-561 39-172 (229)
130 1dce_A Protein (RAB geranylger 99.3 1.8E-14 6.2E-19 158.6 -6.7 189 474-693 346-545 (567)
131 2je0_A Acidic leucine-rich nuc 99.3 2.4E-12 8.3E-17 115.6 8.4 126 428-556 15-148 (149)
132 2v70_A SLIT-2, SLIT homolog 2 99.3 9.5E-12 3.2E-16 119.6 12.0 132 430-561 32-166 (220)
133 4b8c_D Glucose-repressible alc 99.3 8.3E-13 2.8E-17 150.1 4.0 118 446-566 217-334 (727)
134 2xot_A Amphoterin-induced prot 99.3 1E-11 3.4E-16 129.5 11.8 154 430-584 39-201 (361)
135 1w8a_A SLIT protein; signaling 99.2 3.5E-11 1.2E-15 113.0 12.0 128 433-562 11-140 (192)
136 2je0_A Acidic leucine-rich nuc 99.2 1.1E-11 3.6E-16 111.4 7.7 128 451-580 15-148 (149)
137 2ell_A Acidic leucine-rich nuc 99.2 1.6E-11 5.5E-16 112.7 8.1 131 451-584 22-159 (168)
138 4b8c_D Glucose-repressible alc 99.2 6.7E-12 2.3E-16 142.6 6.6 123 421-545 215-337 (727)
139 1a9n_A U2A', U2A'; complex (nu 99.2 2.6E-11 8.9E-16 112.2 9.2 132 425-560 14-152 (176)
140 3sb4_A Hypothetical leucine ri 99.2 6.3E-11 2.2E-15 121.8 12.1 239 429-687 48-327 (329)
141 2wfh_A SLIT homolog 2 protein 99.2 8.7E-11 3E-15 110.2 11.9 125 433-560 13-138 (193)
142 1sxj_B Activator 1 37 kDa subu 99.2 1.3E-10 4.5E-15 119.2 13.5 189 47-261 19-210 (323)
143 1hqc_A RUVB; extended AAA-ATPa 99.1 2.6E-10 9E-15 117.0 14.0 186 47-264 10-214 (324)
144 1w8a_A SLIT protein; signaling 99.1 2.6E-10 9E-15 106.9 11.1 125 455-582 10-136 (192)
145 3te6_A Regulatory protein SIR3 99.1 1.3E-09 4.4E-14 108.8 16.4 177 50-230 21-213 (318)
146 2o6r_A Variable lymphocyte rec 99.1 5.2E-10 1.8E-14 103.5 11.9 129 431-562 8-138 (177)
147 1a9n_A U2A', U2A'; complex (nu 99.1 1.5E-10 5.2E-15 107.0 7.7 131 448-584 14-152 (176)
148 1iqp_A RFCS; clamp loader, ext 99.1 5.2E-10 1.8E-14 115.0 11.4 193 46-264 22-215 (327)
149 2wfh_A SLIT homolog 2 protein 99.0 7.2E-10 2.5E-14 103.9 10.6 107 430-536 31-138 (193)
150 1jr3_A DNA polymerase III subu 99.0 2.7E-09 9.3E-14 111.8 15.5 198 48-262 15-222 (373)
151 1ds9_A Outer arm dynein; leuci 99.0 1.3E-11 4.3E-16 116.8 -3.8 106 425-534 43-150 (198)
152 1ds9_A Outer arm dynein; leuci 99.0 1.4E-11 4.7E-16 116.5 -3.7 142 432-578 25-180 (198)
153 2o6r_A Variable lymphocyte rec 99.0 2.8E-09 9.6E-14 98.5 11.9 126 454-582 8-134 (177)
154 2chq_A Replication factor C sm 98.9 5.2E-09 1.8E-13 107.0 12.4 186 47-262 15-205 (319)
155 4fdw_A Leucine rich hypothetic 98.9 4.2E-08 1.4E-12 102.9 19.4 211 454-691 136-355 (401)
156 2r9u_A Variable lymphocyte rec 98.9 5.7E-09 1.9E-13 95.9 10.5 100 433-534 15-115 (174)
157 4fdw_A Leucine rich hypothetic 98.9 9.9E-08 3.4E-12 100.1 21.3 247 423-691 129-380 (401)
158 3g39_A Variable lymphocyte rec 98.9 5.9E-09 2E-13 95.4 10.4 103 431-535 10-113 (170)
159 3sb4_A Hypothetical leucine ri 98.9 1.2E-08 3.9E-13 104.8 13.1 220 429-664 100-328 (329)
160 3bos_A Putative DNA replicatio 98.9 1.1E-08 3.8E-13 99.8 11.7 178 47-263 26-219 (242)
161 1sxj_D Activator 1 41 kDa subu 98.8 3.5E-08 1.2E-12 102.4 15.7 202 44-261 32-235 (353)
162 1jbk_A CLPB protein; beta barr 98.8 1.4E-08 4.8E-13 95.2 9.4 155 48-224 21-194 (195)
163 3pfi_A Holliday junction ATP-d 98.8 5.1E-08 1.7E-12 100.4 14.4 184 47-263 27-229 (338)
164 1sxj_A Activator 1 95 kDa subu 98.7 5.9E-08 2E-12 105.5 13.2 203 45-260 35-252 (516)
165 3g39_A Variable lymphocyte rec 98.7 3.6E-08 1.2E-12 90.1 9.7 105 454-561 10-115 (170)
166 3pvs_A Replication-associated 98.7 1.2E-07 4.2E-12 100.2 15.1 186 45-261 22-215 (447)
167 2r9u_A Variable lymphocyte rec 98.7 3.9E-08 1.3E-12 90.2 9.8 103 455-561 14-118 (174)
168 1sxj_E Activator 1 40 kDa subu 98.7 4.5E-08 1.5E-12 101.6 10.8 198 48-264 13-240 (354)
169 2qz4_A Paraplegin; AAA+, SPG7, 98.7 3.8E-07 1.3E-11 90.1 15.9 194 47-262 4-223 (262)
170 3h4m_A Proteasome-activating n 98.7 1.3E-07 4.3E-12 94.8 12.5 191 47-261 15-231 (285)
171 3uk6_A RUVB-like 2; hexameric 98.7 4.5E-07 1.5E-11 94.6 17.0 202 48-262 43-304 (368)
172 3un9_A NLR family member X1; l 98.6 7.4E-09 2.5E-13 107.6 2.1 130 430-559 101-250 (372)
173 3un9_A NLR family member X1; l 98.6 3.1E-09 1E-13 110.5 -1.0 154 429-582 71-249 (372)
174 1xwi_A SKD1 protein; VPS4B, AA 98.6 1.2E-06 4.2E-11 88.8 17.7 194 48-264 11-226 (322)
175 3n70_A Transport activator; si 98.6 1.7E-07 5.8E-12 83.0 9.5 115 50-195 2-116 (145)
176 1a5t_A Delta prime, HOLB; zinc 98.6 1.3E-06 4.5E-11 89.3 17.2 174 54-260 7-204 (334)
177 2z4s_A Chromosomal replication 98.6 1.2E-06 4.2E-11 92.9 17.4 166 76-261 130-306 (440)
178 3syl_A Protein CBBX; photosynt 98.6 9.8E-07 3.4E-11 89.4 16.0 163 50-230 32-219 (309)
179 2qp9_X Vacuolar protein sortin 98.6 8.7E-07 3E-11 91.3 15.7 192 47-262 49-262 (355)
180 3eie_A Vacuolar protein sortin 98.6 4.4E-07 1.5E-11 92.4 13.2 193 48-264 17-231 (322)
181 2ifg_A High affinity nerve gro 98.6 1.8E-07 6E-12 96.8 10.2 101 434-535 12-114 (347)
182 3u61_B DNA polymerase accessor 98.5 9.8E-07 3.3E-11 90.1 15.3 185 45-260 22-215 (324)
183 1l8q_A Chromosomal replication 98.5 1.7E-06 6E-11 88.2 17.0 184 48-258 10-205 (324)
184 2ra8_A Uncharacterized protein 98.5 3.1E-08 1.1E-12 101.9 3.7 86 605-692 250-341 (362)
185 1d2n_A N-ethylmaleimide-sensit 98.5 1.2E-06 4.2E-11 86.8 14.4 174 49-252 33-228 (272)
186 3d8b_A Fidgetin-like protein 1 98.5 1.1E-06 3.7E-11 90.8 14.0 194 47-264 82-298 (357)
187 1sxj_C Activator 1 40 kDa subu 98.5 1.3E-06 4.5E-11 89.7 14.6 185 47-259 23-210 (340)
188 2p65_A Hypothetical protein PF 98.5 2E-07 6.7E-12 86.7 7.5 47 47-99 20-66 (187)
189 3b9p_A CG5977-PA, isoform A; A 98.5 3.6E-06 1.2E-10 84.7 16.6 192 47-262 19-234 (297)
190 3vfd_A Spastin; ATPase, microt 98.4 2.3E-06 7.8E-11 89.6 15.3 194 46-263 112-328 (389)
191 2zan_A Vacuolar protein sortin 98.4 2.7E-06 9.4E-11 90.3 16.0 195 46-263 131-347 (444)
192 2ra8_A Uncharacterized protein 98.4 2.4E-07 8.4E-12 95.2 6.1 82 425-509 134-227 (362)
193 4fs7_A Uncharacterized protein 98.3 6.7E-06 2.3E-10 86.4 16.1 59 425-485 157-216 (394)
194 4fcw_A Chaperone protein CLPB; 98.3 3.4E-06 1.2E-10 85.5 12.6 136 50-194 18-169 (311)
195 4fs7_A Uncharacterized protein 98.3 1.4E-05 4.6E-10 84.0 16.9 82 602-690 292-375 (394)
196 3cf0_A Transitional endoplasmi 98.3 6.3E-06 2.1E-10 82.9 13.2 183 49-255 15-222 (301)
197 2ifg_A High affinity nerve gro 98.3 1.7E-06 5.7E-11 89.4 8.8 91 422-514 24-116 (347)
198 4b4t_J 26S protease regulatory 98.2 8.6E-06 3E-10 83.3 13.4 181 49-253 148-353 (405)
199 3co5_A Putative two-component 98.2 6.6E-07 2.2E-11 78.9 4.5 110 50-194 5-115 (143)
200 2gno_A DNA polymerase III, gam 98.2 7.8E-06 2.7E-10 81.7 12.3 149 53-228 1-152 (305)
201 1ojl_A Transcriptional regulat 98.2 6.5E-06 2.2E-10 82.6 11.8 162 49-226 2-188 (304)
202 1qvr_A CLPB protein; coiled co 98.2 7.2E-06 2.5E-10 94.9 13.8 160 47-228 168-345 (854)
203 1ofh_A ATP-dependent HSL prote 98.2 7.5E-06 2.5E-10 82.9 11.2 157 49-226 15-213 (310)
204 1lv7_A FTSH; alpha/beta domain 98.2 2.3E-05 7.9E-10 76.8 14.3 191 47-261 10-225 (257)
205 3pxg_A Negative regulator of g 98.1 7.5E-06 2.6E-10 87.6 11.0 149 48-228 179-338 (468)
206 3e4g_A ATP synthase subunit S, 98.1 8.9E-07 3.1E-11 79.6 3.1 90 605-696 59-154 (176)
207 1in4_A RUVB, holliday junction 98.1 4.3E-05 1.5E-09 77.9 16.0 183 47-262 23-224 (334)
208 2bjv_A PSP operon transcriptio 98.1 4.9E-06 1.7E-10 82.1 8.7 132 49-194 6-150 (265)
209 3ec2_A DNA replication protein 98.1 1.4E-05 4.7E-10 73.6 11.2 121 54-194 19-142 (180)
210 4b4t_H 26S protease regulatory 98.1 1.5E-05 5.2E-10 82.6 12.4 182 48-253 208-414 (467)
211 4b4t_L 26S protease subunit RP 98.1 2.3E-05 7.9E-10 81.5 12.9 182 48-253 180-386 (437)
212 3hu3_A Transitional endoplasmi 98.1 1.2E-05 4E-10 86.0 10.9 189 49-261 204-415 (489)
213 4gt6_A Cell surface protein; l 98.1 0.00012 4.2E-09 76.6 18.3 86 601-693 282-369 (394)
214 1io0_A Tropomodulin; LRR prote 98.0 2.4E-06 8.3E-11 79.0 3.2 89 420-508 26-128 (185)
215 2w58_A DNAI, primosome compone 98.0 9.6E-06 3.3E-10 76.3 7.1 127 49-195 25-159 (202)
216 4b4t_K 26S protease regulatory 98.0 3.7E-05 1.3E-09 79.9 11.9 181 49-253 172-378 (428)
217 2ce7_A Cell division protein F 98.0 6.8E-05 2.3E-09 79.4 14.1 183 48-254 15-221 (476)
218 4b4t_M 26S protease regulatory 98.0 9.9E-06 3.4E-10 84.2 7.3 183 47-253 179-386 (434)
219 1r6b_X CLPA protein; AAA+, N-t 98.0 5E-05 1.7E-09 87.0 13.9 161 48-228 185-362 (758)
220 4b4t_I 26S protease regulatory 97.9 1.5E-05 5E-10 81.8 8.2 182 48-253 181-387 (437)
221 2r62_A Cell division protease 97.9 2.4E-06 8.2E-11 84.6 2.1 162 47-228 9-196 (268)
222 2c9o_A RUVB-like 1; hexameric 97.9 0.00033 1.1E-08 74.7 18.6 99 157-260 297-409 (456)
223 4gt6_A Cell surface protein; l 97.9 0.00021 7E-09 74.9 16.5 82 601-690 305-387 (394)
224 3e4g_A ATP synthase subunit S, 97.9 4E-06 1.4E-10 75.4 2.2 12 632-643 138-149 (176)
225 3pxi_A Negative regulator of g 97.8 6.9E-05 2.4E-09 85.6 12.5 151 48-228 179-338 (758)
226 1io0_A Tropomodulin; LRR prote 97.8 1.4E-05 4.7E-10 73.9 4.8 113 447-559 30-162 (185)
227 2kjq_A DNAA-related protein; s 97.8 1.6E-05 5.5E-10 70.2 4.7 86 77-194 37-124 (149)
228 3t15_A Ribulose bisphosphate c 97.8 0.00036 1.2E-08 69.5 15.1 26 74-99 34-59 (293)
229 3cf2_A TER ATPase, transitiona 97.8 5.3E-05 1.8E-09 84.9 9.5 183 48-254 203-407 (806)
230 3pxi_A Negative regulator of g 97.7 7.8E-05 2.7E-09 85.2 10.3 159 49-228 491-675 (758)
231 4h09_A Hypothetical leucine ri 97.6 0.004 1.4E-07 64.6 20.4 83 602-689 258-341 (379)
232 1qvr_A CLPB protein; coiled co 97.6 0.00014 4.7E-09 84.2 9.5 135 50-194 559-710 (854)
233 1r6b_X CLPA protein; AAA+, N-t 97.5 0.00012 4.2E-09 83.7 8.2 134 49-194 458-607 (758)
234 1um8_A ATP-dependent CLP prote 97.4 0.0023 7.7E-08 66.4 14.9 50 49-98 21-94 (376)
235 2r44_A Uncharacterized protein 97.4 0.00041 1.4E-08 70.6 8.9 153 49-229 27-199 (331)
236 2dhr_A FTSH; AAA+ protein, hex 97.3 0.0019 6.4E-08 68.8 13.7 182 45-254 27-236 (499)
237 1ypw_A Transitional endoplasmi 97.3 0.00035 1.2E-08 79.7 8.6 163 46-228 201-385 (806)
238 2cvh_A DNA repair and recombin 97.3 0.00098 3.4E-08 63.2 10.5 86 76-167 20-117 (220)
239 2qgz_A Helicase loader, putati 97.3 0.00018 6.1E-09 72.1 5.3 56 54-114 133-189 (308)
240 2x8a_A Nuclear valosin-contain 97.3 0.0016 5.4E-08 64.0 11.8 161 48-228 9-191 (274)
241 1jr3_D DNA polymerase III, del 97.3 0.0057 2E-07 62.4 16.4 158 76-260 18-184 (343)
242 3rw6_A Nuclear RNA export fact 97.3 0.00023 7.7E-09 69.2 5.3 81 425-507 165-257 (267)
243 1ixz_A ATP-dependent metallopr 97.2 0.0014 4.9E-08 63.7 11.0 183 48-254 15-221 (254)
244 3rw6_A Nuclear RNA export fact 97.2 0.00028 9.7E-09 68.5 5.4 79 475-554 168-257 (267)
245 3m6a_A ATP-dependent protease 97.2 0.00033 1.1E-08 76.2 6.5 165 49-228 81-266 (543)
246 1iy2_A ATP-dependent metallopr 97.2 0.0022 7.6E-08 63.3 11.6 186 45-254 36-245 (278)
247 3hr8_A Protein RECA; alpha and 97.2 0.0041 1.4E-07 62.9 13.4 86 75-167 60-151 (356)
248 2vhj_A Ntpase P4, P4; non- hyd 97.1 0.00042 1.4E-08 68.3 5.8 70 76-167 123-194 (331)
249 1xp8_A RECA protein, recombina 97.1 0.009 3.1E-07 60.9 15.7 85 76-167 74-164 (366)
250 3cf2_A TER ATPase, transitiona 97.1 0.0014 4.9E-08 73.5 10.3 163 46-228 474-661 (806)
251 2b8t_A Thymidine kinase; deoxy 97.0 0.00089 3.1E-08 63.0 6.4 112 76-195 12-126 (223)
252 2zr9_A Protein RECA, recombina 97.0 0.0063 2.1E-07 61.8 12.9 85 76-167 61-151 (349)
253 1ye8_A Protein THEP1, hypothet 96.9 0.0089 3.1E-07 54.2 12.2 70 152-223 96-171 (178)
254 2w0m_A SSO2452; RECA, SSPF, un 96.8 0.0042 1.4E-07 59.4 9.4 114 77-195 24-168 (235)
255 1g5t_A COB(I)alamin adenosyltr 96.8 0.003 1E-07 57.5 7.5 119 77-197 29-165 (196)
256 3io5_A Recombination and repai 96.7 0.0049 1.7E-07 60.4 9.4 85 78-167 30-123 (333)
257 1n0w_A DNA repair protein RAD5 96.6 0.0025 8.5E-08 61.4 6.5 90 76-166 24-130 (243)
258 1u94_A RECA protein, recombina 96.6 0.012 4.2E-07 59.7 11.7 85 76-167 63-153 (356)
259 1cr0_A DNA primase/helicase; R 96.4 0.013 4.3E-07 58.4 10.1 36 77-114 36-72 (296)
260 2z43_A DNA repair and recombin 96.3 0.0095 3.2E-07 60.1 8.8 55 76-131 107-165 (324)
261 2px0_A Flagellar biosynthesis 96.3 0.027 9.2E-07 55.7 11.8 87 75-164 104-191 (296)
262 1v5w_A DMC1, meiotic recombina 96.2 0.019 6.4E-07 58.3 10.5 56 75-131 121-180 (343)
263 2dr3_A UPF0273 protein PH0284; 96.2 0.018 6.3E-07 55.3 9.8 39 76-116 23-61 (247)
264 1vma_A Cell division protein F 96.1 0.024 8.2E-07 56.2 10.4 91 74-166 102-197 (306)
265 1rz3_A Hypothetical protein rb 96.1 0.0097 3.3E-07 55.3 7.2 43 53-98 2-44 (201)
266 2i1q_A DNA repair and recombin 96.1 0.013 4.4E-07 59.1 8.3 56 75-131 97-166 (322)
267 3upu_A ATP-dependent DNA helic 96.0 0.016 5.5E-07 61.6 9.0 22 78-99 47-68 (459)
268 1pzn_A RAD51, DNA repair and r 95.9 0.012 4.2E-07 59.8 7.5 92 75-167 130-243 (349)
269 4h09_A Hypothetical leucine ri 95.9 0.068 2.3E-06 55.2 13.0 129 473-616 213-342 (379)
270 1ypw_A Transitional endoplasmi 95.8 0.00084 2.9E-08 76.6 -2.0 163 46-228 474-661 (806)
271 3dm5_A SRP54, signal recogniti 95.8 0.077 2.6E-06 55.1 12.8 39 75-115 99-137 (443)
272 1ny5_A Transcriptional regulat 95.8 0.042 1.5E-06 56.8 10.8 130 50-194 138-281 (387)
273 2orw_A Thymidine kinase; TMTK, 95.8 0.0022 7.6E-08 58.6 0.9 107 77-194 4-112 (184)
274 3c8u_A Fructokinase; YP_612366 95.7 0.0072 2.5E-07 56.6 4.4 40 56-99 6-45 (208)
275 3bh0_A DNAB-like replicative h 95.7 0.081 2.8E-06 52.9 12.3 52 76-131 68-119 (315)
276 4a1f_A DNAB helicase, replicat 95.7 0.039 1.3E-06 55.3 9.9 52 76-131 46-97 (338)
277 3nbx_X ATPase RAVA; AAA+ ATPas 95.7 0.008 2.7E-07 64.0 5.0 42 50-99 23-64 (500)
278 3ice_A Transcription terminati 95.7 0.016 5.3E-07 58.5 6.6 50 61-117 164-215 (422)
279 1pgv_A TMD-1, tropomodulin TMD 95.7 0.012 4.1E-07 53.8 5.4 117 422-558 33-167 (197)
280 3jvv_A Twitching mobility prot 95.6 0.022 7.4E-07 57.9 7.8 111 77-199 124-235 (356)
281 3tqc_A Pantothenate kinase; bi 95.6 0.026 8.9E-07 56.2 8.2 45 52-98 70-114 (321)
282 1qhx_A CPT, protein (chloramph 95.6 0.0052 1.8E-07 55.9 2.9 22 77-98 4-25 (178)
283 3hws_A ATP-dependent CLP prote 95.6 0.0075 2.6E-07 62.1 4.4 50 50-99 16-74 (363)
284 3kl4_A SRP54, signal recogniti 95.6 0.066 2.3E-06 55.6 11.3 90 75-166 96-190 (433)
285 1pgv_A TMD-1, tropomodulin TMD 95.5 0.0065 2.2E-07 55.5 3.0 111 403-513 41-169 (197)
286 1g8p_A Magnesium-chelatase 38 95.5 0.0047 1.6E-07 63.2 2.3 47 47-99 22-68 (350)
287 3e70_C DPA, signal recognition 95.5 0.051 1.7E-06 54.5 9.7 57 74-132 127-184 (328)
288 1ly1_A Polynucleotide kinase; 95.5 0.0074 2.5E-07 54.9 3.3 22 77-98 3-24 (181)
289 1odf_A YGR205W, hypothetical 3 95.4 0.011 3.6E-07 58.4 4.6 26 74-99 29-54 (290)
290 3kb2_A SPBC2 prophage-derived 95.3 0.0072 2.5E-07 54.5 2.8 21 78-98 3-23 (173)
291 3lda_A DNA repair protein RAD5 95.3 0.037 1.3E-06 57.1 8.4 55 76-131 178-236 (400)
292 3sr0_A Adenylate kinase; phosp 95.3 0.04 1.4E-06 51.1 7.7 21 78-98 2-22 (206)
293 1kgd_A CASK, peripheral plasma 95.3 0.0095 3.2E-07 54.3 3.3 23 76-98 5-27 (180)
294 1zp6_A Hypothetical protein AT 95.2 0.01 3.6E-07 54.5 3.6 23 76-98 9-31 (191)
295 1tue_A Replication protein E1; 95.2 0.012 4E-07 53.8 3.7 41 53-98 40-80 (212)
296 3lw7_A Adenylate kinase relate 95.2 0.0098 3.3E-07 53.8 3.2 19 78-96 3-21 (179)
297 3uie_A Adenylyl-sulfate kinase 95.2 0.013 4.3E-07 54.5 3.9 25 75-99 24-48 (200)
298 1ex7_A Guanylate kinase; subst 95.2 0.0082 2.8E-07 54.6 2.5 22 77-98 2-23 (186)
299 3dzd_A Transcriptional regulat 95.1 0.064 2.2E-06 54.9 9.3 163 49-226 129-314 (368)
300 2rhm_A Putative kinase; P-loop 95.1 0.012 4.1E-07 54.2 3.4 24 75-98 4-27 (193)
301 3vaa_A Shikimate kinase, SK; s 95.0 0.011 3.9E-07 54.7 3.2 23 76-98 25-47 (199)
302 1gvn_B Zeta; postsegregational 95.0 0.02 7E-07 56.4 5.1 25 74-98 31-55 (287)
303 3trf_A Shikimate kinase, SK; a 95.0 0.011 3.7E-07 54.1 2.8 23 76-98 5-27 (185)
304 2yvu_A Probable adenylyl-sulfa 95.0 0.028 9.7E-07 51.3 5.7 26 74-99 11-36 (186)
305 3tau_A Guanylate kinase, GMP k 95.0 0.013 4.3E-07 54.9 3.3 24 76-99 8-31 (208)
306 1kag_A SKI, shikimate kinase I 95.0 0.0098 3.4E-07 53.7 2.5 22 77-98 5-26 (173)
307 1sky_E F1-ATPase, F1-ATP synth 95.0 0.041 1.4E-06 57.4 7.3 50 78-128 153-203 (473)
308 1nks_A Adenylate kinase; therm 94.9 0.023 8E-07 52.2 5.0 23 77-99 2-24 (194)
309 1ls1_A Signal recognition part 94.9 0.073 2.5E-06 52.6 8.8 88 75-164 97-189 (295)
310 1knq_A Gluconate kinase; ALFA/ 94.9 0.019 6.5E-07 51.9 4.2 24 75-98 7-30 (175)
311 1zu4_A FTSY; GTPase, signal re 94.8 0.068 2.3E-06 53.4 8.4 40 74-115 103-142 (320)
312 3a00_A Guanylate kinase, GMP k 94.8 0.011 3.8E-07 54.2 2.4 22 77-98 2-23 (186)
313 3t61_A Gluconokinase; PSI-biol 94.8 0.012 4.1E-07 54.7 2.7 24 76-99 18-41 (202)
314 4eun_A Thermoresistant glucoki 94.8 0.015 5E-07 54.0 3.2 23 76-98 29-51 (200)
315 2p5t_B PEZT; postsegregational 94.8 0.024 8.2E-07 54.8 4.8 25 74-98 30-54 (253)
316 3fwy_A Light-independent proto 94.7 0.036 1.2E-06 55.2 6.0 41 74-116 46-86 (314)
317 3cmu_A Protein RECA, recombina 94.7 0.029 1E-06 68.8 6.2 84 75-165 1426-1515(2050)
318 1xjc_A MOBB protein homolog; s 94.7 0.029 9.7E-07 50.0 4.7 25 75-99 3-27 (169)
319 3ney_A 55 kDa erythrocyte memb 94.7 0.016 5.6E-07 53.1 3.2 24 75-98 18-41 (197)
320 2qor_A Guanylate kinase; phosp 94.7 0.013 4.6E-07 54.5 2.7 24 75-98 11-34 (204)
321 1kht_A Adenylate kinase; phosp 94.7 0.014 4.9E-07 53.6 2.8 23 77-99 4-26 (192)
322 1tev_A UMP-CMP kinase; ploop, 94.7 0.017 5.7E-07 53.3 3.3 23 76-98 3-25 (196)
323 3tr0_A Guanylate kinase, GMP k 94.7 0.017 5.7E-07 53.8 3.3 22 77-98 8-29 (205)
324 1y63_A LMAJ004144AAA protein; 94.7 0.018 6E-07 52.6 3.4 23 76-98 10-32 (184)
325 2z0h_A DTMP kinase, thymidylat 94.7 0.047 1.6E-06 50.3 6.4 22 78-99 2-23 (197)
326 4gp7_A Metallophosphoesterase; 94.7 0.017 5.9E-07 52.0 3.2 23 76-98 9-31 (171)
327 1ukz_A Uridylate kinase; trans 94.7 0.022 7.4E-07 53.0 4.0 25 74-98 13-37 (203)
328 2r6a_A DNAB helicase, replicat 94.6 0.13 4.5E-06 54.4 10.6 51 76-129 203-253 (454)
329 3umf_A Adenylate kinase; rossm 94.6 0.019 6.5E-07 53.6 3.5 26 74-99 27-52 (217)
330 3tlx_A Adenylate kinase 2; str 94.6 0.024 8.3E-07 54.4 4.4 24 75-98 28-51 (243)
331 2ze6_A Isopentenyl transferase 94.6 0.018 6.2E-07 55.6 3.5 22 77-98 2-23 (253)
332 2ffh_A Protein (FFH); SRP54, s 94.6 0.12 4.1E-06 53.6 9.8 39 75-115 97-135 (425)
333 3iij_A Coilin-interacting nucl 94.6 0.015 5E-07 53.0 2.6 23 76-98 11-33 (180)
334 2ga8_A Hypothetical 39.9 kDa p 94.6 0.031 1.1E-06 56.0 5.1 46 52-99 2-47 (359)
335 2bdt_A BH3686; alpha-beta prot 94.6 0.02 6.7E-07 52.6 3.5 22 77-98 3-24 (189)
336 3cmu_A Protein RECA, recombina 94.6 0.14 4.8E-06 62.9 11.6 87 75-168 382-474 (2050)
337 1lvg_A Guanylate kinase, GMP k 94.5 0.015 5E-07 53.9 2.5 22 77-98 5-26 (198)
338 3asz_A Uridine kinase; cytidin 94.5 0.021 7.1E-07 53.5 3.5 24 75-98 5-28 (211)
339 1uf9_A TT1252 protein; P-loop, 94.5 0.02 6.8E-07 53.2 3.4 25 74-98 6-30 (203)
340 2j41_A Guanylate kinase; GMP, 94.5 0.019 6.7E-07 53.4 3.3 24 76-99 6-29 (207)
341 3e1s_A Exodeoxyribonuclease V, 94.5 0.04 1.4E-06 60.1 6.2 23 77-99 205-227 (574)
342 2xxa_A Signal recognition part 94.5 0.18 6.1E-06 52.6 10.9 59 57-117 78-140 (433)
343 2qt1_A Nicotinamide riboside k 94.5 0.023 7.8E-07 53.0 3.7 24 75-98 20-43 (207)
344 2c95_A Adenylate kinase 1; tra 94.4 0.018 6.3E-07 53.1 2.9 23 76-98 9-31 (196)
345 3bgw_A DNAB-like replicative h 94.4 0.22 7.5E-06 52.3 11.5 52 76-131 197-248 (444)
346 1j8m_F SRP54, signal recogniti 94.4 0.17 5.8E-06 49.9 10.0 90 76-167 98-192 (297)
347 2pbr_A DTMP kinase, thymidylat 94.4 0.062 2.1E-06 49.3 6.6 22 78-99 2-23 (195)
348 3cm0_A Adenylate kinase; ATP-b 94.4 0.025 8.5E-07 51.7 3.7 23 76-98 4-26 (186)
349 1fx0_B ATP synthase beta chain 94.4 0.086 3E-06 55.0 8.1 63 61-129 155-218 (498)
350 2q6t_A DNAB replication FORK h 94.4 0.12 4.2E-06 54.4 9.5 53 76-131 200-252 (444)
351 2j37_W Signal recognition part 94.4 0.38 1.3E-05 51.1 13.1 41 74-116 99-139 (504)
352 1uj2_A Uridine-cytidine kinase 94.3 0.022 7.6E-07 55.0 3.4 25 74-98 20-44 (252)
353 1zuh_A Shikimate kinase; alpha 94.3 0.021 7.2E-07 51.2 3.0 23 76-98 7-29 (168)
354 2plr_A DTMP kinase, probable t 94.3 0.023 7.7E-07 53.2 3.4 24 76-99 4-27 (213)
355 2cdn_A Adenylate kinase; phosp 94.3 0.023 7.9E-07 52.7 3.4 24 75-98 19-42 (201)
356 2grj_A Dephospho-COA kinase; T 94.3 0.027 9.2E-07 51.6 3.6 25 74-98 10-34 (192)
357 1jjv_A Dephospho-COA kinase; P 94.3 0.026 8.8E-07 52.6 3.6 22 77-98 3-24 (206)
358 1qf9_A UMP/CMP kinase, protein 94.2 0.027 9.4E-07 51.7 3.7 24 75-98 5-28 (194)
359 1nn5_A Similar to deoxythymidy 94.2 0.039 1.3E-06 51.7 4.9 24 76-99 9-32 (215)
360 2ck3_D ATP synthase subunit be 94.2 0.16 5.5E-06 52.8 9.6 63 61-129 143-206 (482)
361 1q57_A DNA primase/helicase; d 94.2 0.18 6.2E-06 54.2 10.6 53 76-131 242-294 (503)
362 1via_A Shikimate kinase; struc 94.2 0.023 7.8E-07 51.4 3.0 21 78-98 6-26 (175)
363 1g41_A Heat shock protein HSLU 94.2 0.026 9E-07 58.7 3.8 50 49-98 15-72 (444)
364 2hf9_A Probable hydrogenase ni 94.2 0.04 1.4E-06 52.1 4.8 40 54-99 22-61 (226)
365 2vli_A Antibiotic resistance p 94.2 0.017 5.8E-07 52.6 2.1 23 76-98 5-27 (183)
366 3a4m_A L-seryl-tRNA(SEC) kinas 94.2 0.027 9.2E-07 54.7 3.6 24 76-99 4-27 (260)
367 1e6c_A Shikimate kinase; phosp 94.1 0.018 6.3E-07 51.8 2.2 21 78-98 4-24 (173)
368 2bwj_A Adenylate kinase 5; pho 94.1 0.021 7.2E-07 52.8 2.7 23 76-98 12-34 (199)
369 2jaq_A Deoxyguanosine kinase; 94.1 0.023 8E-07 52.7 3.0 21 78-98 2-22 (205)
370 2pez_A Bifunctional 3'-phospho 94.1 0.031 1.1E-06 50.7 3.6 25 75-99 4-28 (179)
371 1aky_A Adenylate kinase; ATP:A 94.0 0.024 8.3E-07 53.4 2.9 23 76-98 4-26 (220)
372 1s96_A Guanylate kinase, GMP k 94.0 0.027 9.3E-07 52.9 3.2 23 76-98 16-38 (219)
373 1cke_A CK, MSSA, protein (cyti 94.0 0.027 9.3E-07 53.4 3.2 22 77-98 6-27 (227)
374 2iyv_A Shikimate kinase, SK; t 94.0 0.024 8.3E-07 51.7 2.8 21 78-98 4-24 (184)
375 3vkw_A Replicase large subunit 94.0 0.14 4.9E-06 52.9 8.8 103 74-192 159-267 (446)
376 2pt5_A Shikimate kinase, SK; a 94.0 0.027 9.2E-07 50.4 3.0 21 78-98 2-22 (168)
377 2yhs_A FTSY, cell division pro 94.0 0.28 9.6E-06 51.5 11.0 24 75-98 292-315 (503)
378 2if2_A Dephospho-COA kinase; a 94.0 0.028 9.5E-07 52.3 3.2 21 78-98 3-23 (204)
379 2bbw_A Adenylate kinase 4, AK4 94.0 0.027 9.4E-07 54.1 3.2 23 76-98 27-49 (246)
380 1htw_A HI0065; nucleotide-bind 93.9 0.038 1.3E-06 48.7 3.8 23 76-98 33-55 (158)
381 2f6r_A COA synthase, bifunctio 93.9 0.034 1.1E-06 54.7 3.8 24 74-97 73-96 (281)
382 1rj9_A FTSY, signal recognitio 93.9 0.048 1.6E-06 54.1 4.9 24 75-98 101-124 (304)
383 2ewv_A Twitching motility prot 93.9 0.18 6E-06 51.7 9.3 111 75-197 135-246 (372)
384 2wwf_A Thymidilate kinase, put 93.9 0.026 8.8E-07 52.8 2.8 24 76-99 10-33 (212)
385 1znw_A Guanylate kinase, GMP k 93.9 0.029 1E-06 52.3 3.2 23 76-98 20-42 (207)
386 1z6g_A Guanylate kinase; struc 93.9 0.025 8.4E-07 53.3 2.6 23 76-98 23-45 (218)
387 2jeo_A Uridine-cytidine kinase 93.9 0.035 1.2E-06 53.4 3.7 24 75-98 24-47 (245)
388 3aez_A Pantothenate kinase; tr 93.8 0.036 1.2E-06 55.2 3.7 25 74-98 88-112 (312)
389 3l0o_A Transcription terminati 93.8 0.033 1.1E-06 56.0 3.4 36 59-99 163-198 (427)
390 3cmw_A Protein RECA, recombina 93.8 0.15 5.2E-06 61.8 9.6 87 75-168 382-474 (1706)
391 2ged_A SR-beta, signal recogni 93.7 0.047 1.6E-06 50.0 4.3 26 74-99 46-71 (193)
392 3k1j_A LON protease, ATP-depen 93.7 0.03 1E-06 61.8 3.3 45 46-98 38-82 (604)
393 3fb4_A Adenylate kinase; psych 93.7 0.033 1.1E-06 52.3 3.0 21 78-98 2-22 (216)
394 2wsm_A Hydrogenase expression/ 93.7 0.05 1.7E-06 51.2 4.4 41 53-99 13-53 (221)
395 2v54_A DTMP kinase, thymidylat 93.6 0.033 1.1E-06 51.7 2.9 23 77-99 5-27 (204)
396 1zd8_A GTP:AMP phosphotransfer 93.6 0.033 1.1E-06 52.8 3.0 23 76-98 7-29 (227)
397 2pt7_A CAG-ALFA; ATPase, prote 93.6 0.099 3.4E-06 52.6 6.6 106 77-197 172-277 (330)
398 3dl0_A Adenylate kinase; phosp 93.6 0.034 1.2E-06 52.2 3.0 21 78-98 2-22 (216)
399 4akg_A Glutathione S-transfera 93.6 0.18 6E-06 64.4 10.0 140 77-228 1268-1431(2695)
400 3hjn_A DTMP kinase, thymidylat 93.5 0.1 3.6E-06 47.9 6.2 50 78-129 2-51 (197)
401 2qmh_A HPR kinase/phosphorylas 93.5 0.039 1.3E-06 50.1 3.1 23 77-99 35-57 (205)
402 2fz4_A DNA repair protein RAD2 93.5 0.52 1.8E-05 44.7 11.3 107 54-180 95-217 (237)
403 3end_A Light-independent proto 93.5 0.096 3.3E-06 52.2 6.4 44 74-119 39-82 (307)
404 3b9q_A Chloroplast SRP recepto 93.5 0.071 2.4E-06 52.8 5.2 25 75-99 99-123 (302)
405 1m7g_A Adenylylsulfate kinase; 93.4 0.048 1.7E-06 51.0 3.8 25 75-99 24-48 (211)
406 1vht_A Dephospho-COA kinase; s 93.4 0.047 1.6E-06 51.3 3.7 23 76-98 4-26 (218)
407 3a8t_A Adenylate isopentenyltr 93.4 0.048 1.7E-06 54.2 3.8 25 75-99 39-63 (339)
408 3foz_A TRNA delta(2)-isopenten 93.4 0.047 1.6E-06 53.5 3.6 24 75-98 9-32 (316)
409 3llm_A ATP-dependent RNA helic 93.4 0.12 4.2E-06 49.1 6.6 23 77-99 77-99 (235)
410 2ehv_A Hypothetical protein PH 93.4 0.065 2.2E-06 51.5 4.8 38 76-114 30-67 (251)
411 3exa_A TRNA delta(2)-isopenten 93.3 0.048 1.6E-06 53.5 3.6 23 76-98 3-25 (322)
412 2eyu_A Twitching motility prot 93.3 0.08 2.8E-06 51.2 5.2 112 76-198 25-136 (261)
413 1zak_A Adenylate kinase; ATP:A 93.3 0.032 1.1E-06 52.6 2.4 23 76-98 5-27 (222)
414 3p32_A Probable GTPase RV1496/ 93.3 0.14 4.9E-06 52.1 7.3 26 74-99 77-102 (355)
415 4e22_A Cytidylate kinase; P-lo 93.2 0.044 1.5E-06 52.9 3.2 23 76-98 27-49 (252)
416 4a74_A DNA repair and recombin 93.2 0.049 1.7E-06 51.7 3.4 42 75-116 24-69 (231)
417 3d3q_A TRNA delta(2)-isopenten 93.1 0.05 1.7E-06 54.3 3.5 22 77-98 8-29 (340)
418 1w36_D RECD, exodeoxyribonucle 93.1 0.21 7.2E-06 54.9 8.8 23 77-99 165-187 (608)
419 3crm_A TRNA delta(2)-isopenten 93.1 0.051 1.7E-06 53.9 3.5 23 76-98 5-27 (323)
420 1a7j_A Phosphoribulokinase; tr 93.1 0.024 8.1E-07 56.0 1.1 24 75-98 4-27 (290)
421 2j9r_A Thymidine kinase; TK1, 93.1 0.12 4.2E-06 47.6 5.8 109 76-195 28-138 (214)
422 1np6_A Molybdopterin-guanine d 93.1 0.1 3.5E-06 46.8 5.1 24 76-99 6-29 (174)
423 3lnc_A Guanylate kinase, GMP k 93.1 0.032 1.1E-06 53.0 2.0 23 76-98 27-50 (231)
424 2i3b_A HCR-ntpase, human cance 93.0 0.044 1.5E-06 50.1 2.7 23 78-100 3-25 (189)
425 1gtv_A TMK, thymidylate kinase 93.0 0.026 8.8E-07 52.9 1.2 22 78-99 2-23 (214)
426 4eaq_A DTMP kinase, thymidylat 93.0 0.094 3.2E-06 49.6 5.1 25 75-99 25-49 (229)
427 3zvl_A Bifunctional polynucleo 93.0 0.056 1.9E-06 56.5 3.8 26 74-99 256-281 (416)
428 2f1r_A Molybdopterin-guanine d 93.0 0.031 1E-06 50.1 1.5 23 77-99 3-25 (171)
429 4edh_A DTMP kinase, thymidylat 92.9 0.18 6E-06 47.0 6.8 24 76-99 6-29 (213)
430 1sq5_A Pantothenate kinase; P- 92.9 0.062 2.1E-06 53.6 3.8 24 75-98 79-102 (308)
431 3ake_A Cytidylate kinase; CMP 92.9 0.055 1.9E-06 50.3 3.3 21 78-98 4-24 (208)
432 2og2_A Putative signal recogni 92.9 0.095 3.2E-06 53.1 5.1 25 75-99 156-180 (359)
433 3rfe_A Platelet glycoprotein I 92.8 0.17 5.7E-06 42.9 5.9 52 434-488 12-66 (130)
434 3tif_A Uncharacterized ABC tra 92.8 0.056 1.9E-06 51.4 3.2 22 77-98 32-53 (235)
435 2onk_A Molybdate/tungstate ABC 92.8 0.055 1.9E-06 51.6 3.2 22 77-98 25-46 (240)
436 3r20_A Cytidylate kinase; stru 92.8 0.054 1.9E-06 51.1 3.1 23 76-98 9-31 (233)
437 2r8r_A Sensor protein; KDPD, P 92.8 0.14 4.9E-06 47.6 5.8 104 77-194 7-126 (228)
438 1ltq_A Polynucleotide kinase; 92.8 0.055 1.9E-06 53.8 3.3 22 77-98 3-24 (301)
439 1e4v_A Adenylate kinase; trans 92.7 0.053 1.8E-06 50.8 2.9 21 78-98 2-22 (214)
440 1tf7_A KAIC; homohexamer, hexa 92.7 0.094 3.2E-06 56.7 5.2 113 76-195 281-417 (525)
441 3vr4_A V-type sodium ATPase ca 92.7 0.23 7.9E-06 52.6 7.8 48 61-117 222-269 (600)
442 2zts_A Putative uncharacterize 92.7 0.16 5.5E-06 48.7 6.4 49 76-127 30-78 (251)
443 1cp2_A CP2, nitrogenase iron p 92.6 0.13 4.5E-06 50.1 5.8 40 77-118 2-41 (269)
444 2xb4_A Adenylate kinase; ATP-b 92.6 0.057 2E-06 50.9 3.0 21 78-98 2-22 (223)
445 1u0j_A DNA replication protein 92.6 0.1 3.6E-06 50.0 4.8 23 76-98 104-126 (267)
446 3nwj_A ATSK2; P loop, shikimat 92.6 0.049 1.7E-06 52.2 2.5 22 77-98 49-70 (250)
447 2pcj_A ABC transporter, lipopr 92.6 0.06 2.1E-06 50.8 3.1 22 77-98 31-52 (224)
448 3ld9_A DTMP kinase, thymidylat 92.6 0.16 5.6E-06 47.4 6.0 27 74-100 19-45 (223)
449 1ak2_A Adenylate kinase isoenz 92.6 0.059 2E-06 51.3 3.1 24 76-99 16-39 (233)
450 3b5x_A Lipid A export ATP-bind 92.5 0.53 1.8E-05 51.5 10.9 23 76-98 369-391 (582)
451 3be4_A Adenylate kinase; malar 92.5 0.06 2.1E-06 50.5 2.9 22 77-98 6-27 (217)
452 4gzl_A RAS-related C3 botulinu 92.4 0.074 2.5E-06 49.3 3.4 41 53-99 13-53 (204)
453 3io3_A DEHA2D07832P; chaperone 92.4 0.14 4.7E-06 51.8 5.6 44 74-119 16-61 (348)
454 2cbz_A Multidrug resistance-as 92.3 0.071 2.4E-06 50.8 3.2 52 146-197 136-191 (237)
455 3iqw_A Tail-anchored protein t 92.3 0.14 4.9E-06 51.3 5.6 45 75-121 15-59 (334)
456 3gfo_A Cobalt import ATP-bindi 92.2 0.072 2.5E-06 51.9 3.2 22 77-98 35-56 (275)
457 3b85_A Phosphate starvation-in 92.2 0.057 2E-06 50.2 2.4 22 78-99 24-45 (208)
458 3tqf_A HPR(Ser) kinase; transf 92.2 0.081 2.8E-06 46.7 3.1 22 77-98 17-38 (181)
459 2afh_E Nitrogenase iron protei 92.2 0.16 5.4E-06 50.1 5.7 40 77-118 3-42 (289)
460 3mfy_A V-type ATP synthase alp 92.2 0.19 6.5E-06 53.0 6.4 46 77-126 228-274 (588)
461 2wji_A Ferrous iron transport 92.2 0.098 3.4E-06 46.5 3.9 23 77-99 4-26 (165)
462 1q3t_A Cytidylate kinase; nucl 92.2 0.078 2.7E-06 50.5 3.3 25 74-98 14-38 (236)
463 1b0u_A Histidine permease; ABC 92.2 0.075 2.6E-06 51.4 3.2 22 77-98 33-54 (262)
464 3cmw_A Protein RECA, recombina 92.1 0.19 6.6E-06 61.0 7.2 84 76-166 1431-1520(1706)
465 2v3c_C SRP54, signal recogniti 92.1 0.1 3.5E-06 54.5 4.3 39 75-115 98-136 (432)
466 3lv8_A DTMP kinase, thymidylat 92.1 0.21 7.3E-06 47.2 6.2 24 76-99 27-50 (236)
467 1yrb_A ATP(GTP)binding protein 92.1 0.17 5.8E-06 48.9 5.8 26 74-99 12-37 (262)
468 1mv5_A LMRA, multidrug resista 92.1 0.088 3E-06 50.3 3.5 23 76-98 28-50 (243)
469 4g1u_C Hemin import ATP-bindin 92.0 0.08 2.7E-06 51.3 3.2 22 77-98 38-59 (266)
470 1ji0_A ABC transporter; ATP bi 92.0 0.083 2.8E-06 50.4 3.2 22 77-98 33-54 (240)
471 1g6h_A High-affinity branched- 91.9 0.083 2.8E-06 51.0 3.2 22 77-98 34-55 (257)
472 1sgw_A Putative ABC transporte 91.9 0.071 2.4E-06 49.7 2.6 22 77-98 36-57 (214)
473 2zej_A Dardarin, leucine-rich 91.9 0.082 2.8E-06 48.0 3.1 22 78-99 4-25 (184)
474 2ff7_A Alpha-hemolysin translo 91.9 0.084 2.9E-06 50.6 3.2 22 77-98 36-57 (247)
475 2vp4_A Deoxynucleoside kinase; 91.9 0.09 3.1E-06 49.9 3.4 25 74-98 18-42 (230)
476 2olj_A Amino acid ABC transpor 91.9 0.084 2.9E-06 51.0 3.2 22 77-98 51-72 (263)
477 3eph_A TRNA isopentenyltransfe 91.9 0.089 3E-06 53.6 3.5 23 76-98 2-24 (409)
478 3vr4_D V-type sodium ATPase su 91.9 0.077 2.6E-06 54.8 3.0 50 78-129 153-207 (465)
479 2pze_A Cystic fibrosis transme 91.8 0.087 3E-06 49.8 3.2 53 146-198 139-193 (229)
480 1oix_A RAS-related protein RAB 91.8 0.087 3E-06 48.2 3.2 24 76-99 29-52 (191)
481 3ozx_A RNAse L inhibitor; ATP 91.8 0.7 2.4E-05 49.7 10.6 24 75-98 24-47 (538)
482 2v9p_A Replication protein E1; 91.8 0.084 2.9E-06 52.1 3.1 23 76-98 126-148 (305)
483 3v9p_A DTMP kinase, thymidylat 91.8 0.18 6.1E-06 47.4 5.3 24 76-99 25-48 (227)
484 1svm_A Large T antigen; AAA+ f 91.8 0.087 3E-06 53.8 3.3 24 75-98 168-191 (377)
485 2wjg_A FEOB, ferrous iron tran 91.8 0.14 4.7E-06 46.6 4.4 25 75-99 6-30 (188)
486 2d2e_A SUFC protein; ABC-ATPas 91.8 0.091 3.1E-06 50.5 3.3 22 77-98 30-51 (250)
487 1vpl_A ABC transporter, ATP-bi 91.7 0.09 3.1E-06 50.6 3.2 22 77-98 42-63 (256)
488 3f9v_A Minichromosome maintena 91.7 0.054 1.8E-06 59.3 1.7 51 49-99 295-350 (595)
489 2ghi_A Transport protein; mult 91.7 0.093 3.2E-06 50.7 3.2 22 77-98 47-68 (260)
490 4tmk_A Protein (thymidylate ki 91.6 0.25 8.7E-06 45.9 6.1 52 77-129 4-55 (213)
491 2zu0_C Probable ATP-dependent 91.6 0.094 3.2E-06 50.9 3.2 22 77-98 47-68 (267)
492 3j16_B RLI1P; ribosome recycli 91.6 0.77 2.6E-05 50.1 10.8 124 77-200 379-533 (608)
493 2ixe_A Antigen peptide transpo 91.6 0.096 3.3E-06 51.0 3.2 53 146-198 165-220 (271)
494 3fkq_A NTRC-like two-domain pr 91.6 0.22 7.4E-06 51.1 6.1 41 74-116 141-182 (373)
495 3j16_B RLI1P; ribosome recycli 91.6 1 3.4E-05 49.2 11.6 23 76-98 103-125 (608)
496 2qi9_C Vitamin B12 import ATP- 91.6 0.097 3.3E-06 50.1 3.2 22 77-98 27-48 (249)
497 2dyk_A GTP-binding protein; GT 91.5 0.12 3.9E-06 45.5 3.5 23 77-99 2-24 (161)
498 4dzz_A Plasmid partitioning pr 91.5 0.2 6.7E-06 46.4 5.2 42 77-120 2-44 (206)
499 2f9l_A RAB11B, member RAS onco 91.4 0.11 3.6E-06 48.0 3.3 24 76-99 5-28 (199)
500 1nlf_A Regulatory protein REPA 91.4 0.088 3E-06 51.7 2.8 22 77-98 31-52 (279)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=2.1e-39 Score=357.78 Aligned_cols=315 Identities=17% Similarity=0.264 Sum_probs=237.4
Q ss_pred eecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhc--chhhHhcCCceEEEEecCCC--CHHHHHHHH
Q 036466 52 IGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYN--DQRVEEHFELKIWICVSEDS--GKRQIMTKI 127 (727)
Q Consensus 52 vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~--~~~~~~~f~~~~~~~~~~~~--~~~~~~~~l 127 (727)
|||++++++|.++|.... +...++|+|+|+||+||||||+++++ +.+.+.+|+.++|+++++.. +...++.++
T Consensus 131 ~GR~~~~~~l~~~L~~~~---~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC---DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT---TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc---CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHH
Confidence 499999999999997632 24579999999999999999999997 45788999999999998875 788999999
Q ss_pred HHHhcCCCC-------CCCChHHHHHHHHHHhCCc-eEEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEEecCchHHHH
Q 036466 128 INSVTGGNH-------GNLDPDRLQKVLRDSLNGK-RYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNKVAL 199 (727)
Q Consensus 128 l~~l~~~~~-------~~~~~~~~~~~l~~~l~~~-~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~iliTsr~~~~~~ 199 (727)
+.+++.... ...+...+...+++.+.++ ++||||||+|+.++..|.. .+||+||||||++.++.
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~--------~~gs~ilvTTR~~~v~~ 279 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQ--------ELRLRCLVTTRDVEISN 279 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHH--------HTTCEEEEEESBGGGGG
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhcccc--------cCCCEEEEEcCCHHHHH
Confidence 999975421 1234566789999999996 9999999998754322221 17999999999987765
Q ss_pred HHhhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchHHHHHHHhhhcCCCChhhHHHH--H
Q 036466 200 IMATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVRTVGSLLYGSTDEHDWEYV--R 277 (727)
Q Consensus 200 ~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l~~~~~~~~w~~~--~ 277 (727)
.+.. ....+++++|+.+++++||.+.++.... .+...+++.+|++.|+|+|+|+.++|+.++.+ .|+.+ .
T Consensus 280 ~~~~--~~~~~~l~~L~~~ea~~Lf~~~a~~~~~--~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~----~w~~~~~l 351 (549)
T 2a5y_B 280 AASQ--TCEFIEVTSLEIDECYDFLEAYGMPMPV--GEKEEDVLNKTIELSSGNPATLMMFFKSCEPK----TFEKMAQL 351 (549)
T ss_dssp GCCS--CEEEEECCCCCHHHHHHHHHHTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS----SHHHHHHH
T ss_pred HcCC--CCeEEECCCCCHHHHHHHHHHHhcCCCC--chhHHHHHHHHHHHhCCChHHHHHHHHHhccc----hHHHHHHh
Confidence 3321 2256999999999999999998765432 35677889999999999999999999999654 24433 2
Q ss_pred hccccccccCCCChhHHHHHhhhcCChhHHHHHh-----------HhccCCCCCccChHHHHHHHHhc--ccccCCCCCc
Q 036466 278 DNDIWKLRQAPDDILPALRLSYDQLPPHLKQCFA-----------YCSIFPKDYEFASVHLVQLWMAH--GLLQSPNKNE 344 (727)
Q Consensus 278 ~~~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~~-----------~la~f~~~~~~~~~~l~~~w~~~--~~~~~~~~~~ 344 (727)
....... ....+..++..||+.|+++.+.||. ++|+||+++.++ +..|+++ |++...+...
T Consensus 352 ~~~l~~~--~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~ 425 (549)
T 2a5y_B 352 NNKLESR--GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQ 425 (549)
T ss_dssp HHHHHHH--CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CC
T ss_pred HHHhhcc--cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCC
Confidence 2111111 2344556666666666666666666 999999999988 7899999 8888765455
Q ss_pred hHHHHHHHHHHHHHhCCcceecCCCCCCCceehhhHhhHHHHHHHHHhcCcE
Q 036466 345 ELENIGMRYFKELCSRSFFQDLGDLLPGLEVFNFQIHDLMHDLALLVAKGEC 396 (727)
Q Consensus 345 ~~~~~~~~~l~~L~~~~ll~~~~~~~~~~~~~~~~~h~li~~~~~~~~~~~~ 396 (727)
..+++++ +|++|++++|++..... ...+|+||+++|+|++..+.++.
T Consensus 426 ~~~~~~~-~l~~L~~rsLl~~~~~~----~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 426 LDDEVAD-RLKRLSKRGALLSGKRM----PVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp CTHHHHH-HHHHTTTBSSCSEEECS----SSCEEECCHHHHHHHHTTSCTHH
T ss_pred CHHHHHH-HHHHHHHcCCeeEecCC----CceEEEeChHHHHHHHHHHHHHH
Confidence 5666666 99999999999976432 23479999999999998887653
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=2.3e-32 Score=303.71 Aligned_cols=286 Identities=19% Similarity=0.244 Sum_probs=221.2
Q ss_pred CceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCc-eEEEEecCCCCHHHHHHHH
Q 036466 49 SDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFEL-KIWICVSEDSGKRQIMTKI 127 (727)
Q Consensus 49 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~-~~~~~~~~~~~~~~~~~~l 127 (727)
...|||++++++|.++|... +..++|+|+||||+||||||++++++.+++.+|+. ++|+++++..+...++..+
T Consensus 128 k~~VGRe~eLeeL~elL~~~-----d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~L 202 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLEL-----RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML 202 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHC-----CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhcc-----CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHH
Confidence 34599999999999999763 23689999999999999999999987678889986 8999999988888887777
Q ss_pred HHHhcCC------CCC-----CCChHHHHHHHHHHh---CCceEEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEEecC
Q 036466 128 INSVTGG------NHG-----NLDPDRLQKVLRDSL---NGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTR 193 (727)
Q Consensus 128 l~~l~~~------~~~-----~~~~~~~~~~l~~~l---~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~iliTsr 193 (727)
+..+... ... ..+.+++.+.+++.+ .++++||||||+|+. ..|..+ . +|++||||||
T Consensus 203 l~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~--eqLe~f----~---pGSRILVTTR 273 (1221)
T 1vt4_I 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA--KAWNAF----N---LSCKILLTTR 273 (1221)
T ss_dssp HHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCH--HHHHHH----H---SSCCEEEECS
T ss_pred HHHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChH--HHHHhh----C---CCeEEEEecc
Confidence 7754211 000 012345566677755 679999999999873 344433 2 6999999999
Q ss_pred chHHHHHHhhcCCCCceecC------CCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchHHHHHHHhhhcCC
Q 036466 194 SNKVALIMATMRGTTGYNLQ------ELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVRTVGSLLYGS 267 (727)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~l~------~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l~~~ 267 (727)
++.++..+... ..+.++ +|+.+|+++||.+.+.. . . .+...+ .|+|+|+|+.++|+.|+++
T Consensus 274 d~~Va~~l~g~---~vy~LeL~d~dL~LS~eEA~eLF~~~~g~-~---~---eeL~~e---ICgGLPLALkLaGs~Lr~k 340 (1221)
T 1vt4_I 274 FKQVTDFLSAA---TTTHISLDHHSMTLTPDEVKSLLLKYLDC-R---P---QDLPRE---VLTTNPRRLSIIAESIRDG 340 (1221)
T ss_dssp CSHHHHHHHHH---SSCEEEECSSSSCCCHHHHHHHHHHHHCC-C---T---TTHHHH---HCCCCHHHHHHHHHHHHHS
T ss_pred ChHHHHhcCCC---eEEEecCccccCCcCHHHHHHHHHHHcCC-C---H---HHHHHH---HhCCCHHHHHHHHHHHhCC
Confidence 99887644332 345566 89999999999998421 1 1 122233 4999999999999999876
Q ss_pred C-ChhhHHHHHhccccccccCCCChhHHHHHhhhcCChhH-HHHHhHhccCCCCCccChHHHHHHHHhcccccCCCCCch
Q 036466 268 T-DEHDWEYVRDNDIWKLRQAPDDILPALRLSYDQLPPHL-KQCFAYCSIFPKDYEFASVHLVQLWMAHGLLQSPNKNEE 345 (727)
Q Consensus 268 ~-~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~-~~~~~~la~f~~~~~~~~~~l~~~w~~~~~~~~~~~~~~ 345 (727)
. ....|+.. ....+..++..||+.|+++. |.||+++|+||+++.++...++..|.++|
T Consensus 341 ~~s~eeW~~~----------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG---------- 400 (1221)
T 1vt4_I 341 LATWDNWKHV----------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI---------- 400 (1221)
T ss_dssp CSSHHHHHHC----------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC----------
T ss_pred CCCHHHHhcC----------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC----------
Confidence 4 45667532 23578999999999999999 99999999999999999999999998766
Q ss_pred HHHHHHHHHHHHHhCCcceecCCCCCCCceehhhHhhHHHHHH
Q 036466 346 LENIGMRYFKELCSRSFFQDLGDLLPGLEVFNFQIHDLMHDLA 388 (727)
Q Consensus 346 ~~~~~~~~l~~L~~~~ll~~~~~~~~~~~~~~~~~h~li~~~~ 388 (727)
++.++.+|++|.+++|++.... ...|+||+++++..
T Consensus 401 -eedAe~~L~eLvdRSLLq~d~~------~~rYrMHDLllELr 436 (1221)
T 1vt4_I 401 -KSDVMVVVNKLHKYSLVEKQPK------ESTISIPSIYLELK 436 (1221)
T ss_dssp -SHHHHHHHHHHHTSSSSSBCSS------SSEEBCCCHHHHHH
T ss_pred -HHHHHHHHHHHHhhCCEEEeCC------CCEEEehHHHHHHh
Confidence 1347889999999999997422 23799999998844
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.98 E-value=2.9e-32 Score=334.19 Aligned_cols=317 Identities=22% Similarity=0.289 Sum_probs=242.8
Q ss_pred ccCCCCCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhh-HhcC-CceEEEEecCCCC
Q 036466 42 THSFVRPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRV-EEHF-ELKIWICVSEDSG 119 (727)
Q Consensus 42 ~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~-~~~f-~~~~~~~~~~~~~ 119 (727)
...|.++..||||++++++|.++|.... +..++|+|+|+||+||||||++++++... ..+| +.++|+++++...
T Consensus 117 ~~~p~~~~~~vgR~~~~~~l~~~l~~~~----~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 192 (1249)
T 3sfz_A 117 GGVPQRPVIFVTRKKLVHAIQQKLWKLN----GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDK 192 (1249)
T ss_dssp TTCCCCCSSCCCCHHHHHHHHHHHHTTT----TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCH
T ss_pred CCCCCCCceeccHHHHHHHHHHHHhhcc----CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCc
Confidence 3455667789999999999999997642 46789999999999999999999997544 4445 6778999987543
Q ss_pred --HHHHHHHHHHHhcCCC----CCCCChHHHHHHHHHHhCCc--eEEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEEe
Q 036466 120 --KRQIMTKIINSVTGGN----HGNLDPDRLQKVLRDSLNGK--RYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVT 191 (727)
Q Consensus 120 --~~~~~~~ll~~l~~~~----~~~~~~~~~~~~l~~~l~~~--~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~iliT 191 (727)
....+..++..+.... ....+.+++.+.++..+.++ ++||||||+|+.. . +....+|++||||
T Consensus 193 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~--~-------~~~~~~~~~ilvT 263 (1249)
T 3sfz_A 193 SGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW--V-------LKAFDNQCQILLT 263 (1249)
T ss_dssp HHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH--H-------HTTTCSSCEEEEE
T ss_pred hHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH--H-------HHhhcCCCEEEEE
Confidence 3344667777775432 23456778889999999877 9999999998542 2 2233679999999
Q ss_pred cCchHHHHHHhhcCCCCceecCC-CChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchHHHHHHHhhhcCCCCh
Q 036466 192 TRSNKVALIMATMRGTTGYNLQE-LPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVRTVGSLLYGSTDE 270 (727)
Q Consensus 192 sr~~~~~~~~~~~~~~~~~~l~~-l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l~~~~~~ 270 (727)
||++.++... ......+.+.+ |+++|++++|...+.... +...+.+++|++.|+|+|+|+.++|+.++.+.
T Consensus 264 tR~~~~~~~~--~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-- 335 (1249)
T 3sfz_A 264 TRDKSVTDSV--MGPKHVVPVESGLGREKGLEILSLFVNMKK----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-- 335 (1249)
T ss_dssp ESSTTTTTTC--CSCBCCEECCSSCCHHHHHHHHHHHHTSCS----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--
T ss_pred cCCHHHHHhh--cCCceEEEecCCCCHHHHHHHHHHhhCCCh----hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--
Confidence 9998765321 22346788985 999999999998874322 23345689999999999999999999997654
Q ss_pred hhHHHHHhcccccc----ccC----CCChhHHHHHhhhcCChhHHHHHhHhccCCCCCccChHHHHHHHHhcccccCCCC
Q 036466 271 HDWEYVRDNDIWKL----RQA----PDDILPALRLSYDQLPPHLKQCFAYCSIFPKDYEFASVHLVQLWMAHGLLQSPNK 342 (727)
Q Consensus 271 ~~w~~~~~~~~~~~----~~~----~~~~~~~l~~~~~~L~~~~~~~~~~la~f~~~~~~~~~~l~~~w~~~~~~~~~~~ 342 (727)
..|+.......... ... ...+..++..||+.|++++|.||.++|+||+++.++...++..|.++
T Consensus 336 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-------- 407 (1249)
T 3sfz_A 336 NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE-------- 407 (1249)
T ss_dssp SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC--------
T ss_pred hHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC--------
Confidence 35665544321111 111 13588999999999999999999999999999999999999999543
Q ss_pred CchHHHHHHHHHHHHHhCCcceecCCCCCCCceehhhHhhHHHHHHHHHhcCc
Q 036466 343 NEELENIGMRYFKELCSRSFFQDLGDLLPGLEVFNFQIHDLMHDLALLVAKGE 395 (727)
Q Consensus 343 ~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~~~~~~~~h~li~~~~~~~~~~~ 395 (727)
.+.++.+|++|.+++|++..... ...+|+||+++|+|++....++
T Consensus 408 ----~~~~~~~l~~L~~~sl~~~~~~~----~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 408 ----TEEVEDILQEFVNKSLLFCNRNG----KSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp ----HHHHHHHHHHHHHTTSCEEEESS----SSEEEECCHHHHHHHHHHTGGG
T ss_pred ----HHHHHHHHHHHHhccceEEecCC----CceEEEecHHHHHHHHhhhhHH
Confidence 35678999999999999875432 3456999999999999886654
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.97 E-value=1.4e-30 Score=292.22 Aligned_cols=311 Identities=23% Similarity=0.307 Sum_probs=230.6
Q ss_pred cCCCCCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhh-HhcC-CceEEEEecCCCCH
Q 036466 43 HSFVRPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRV-EEHF-ELKIWICVSEDSGK 120 (727)
Q Consensus 43 ~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~-~~~f-~~~~~~~~~~~~~~ 120 (727)
..|..+..||||++++++|.+++.... +..++|+|+|+||+||||||.+++++... +..| +.++|++++.. +.
T Consensus 118 ~~P~~~~~~vGR~~~l~~L~~~L~~~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~ 192 (591)
T 1z6t_A 118 GVPQRPVVFVTRKKLVNAIQQKLSKLK----GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DK 192 (591)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHTTST----TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CH
T ss_pred CCCCCCCeecccHHHHHHHHHHHhccc----CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-ch
Confidence 345667789999999999999997532 45789999999999999999999997655 7788 57999999765 33
Q ss_pred HHHHHH---HHHHhcCC----CCCCCChHHHHHHHHHHhCC--ceEEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEEe
Q 036466 121 RQIMTK---IINSVTGG----NHGNLDPDRLQKVLRDSLNG--KRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVT 191 (727)
Q Consensus 121 ~~~~~~---ll~~l~~~----~~~~~~~~~~~~~l~~~l~~--~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~iliT 191 (727)
..++.. ++..+... .....+.+.+...+...+.+ +++||||||+|+.. . ... ..++++||||
T Consensus 193 ~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~--~----l~~---l~~~~~ilvT 263 (591)
T 1z6t_A 193 SGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSW--V----LKA---FDSQCQILLT 263 (591)
T ss_dssp HHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHH--H----HHT---TCSSCEEEEE
T ss_pred HHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHH--H----HHH---hcCCCeEEEE
Confidence 333333 34454321 22345567778888887765 78999999997532 1 122 2578999999
Q ss_pred cCchHHHHHHhhcCCCCceec---CCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchHHHHHHHhhhcCCC
Q 036466 192 TRSNKVALIMATMRGTTGYNL---QELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVRTVGSLLYGST 268 (727)
Q Consensus 192 sr~~~~~~~~~~~~~~~~~~l---~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l~~~~ 268 (727)
||+..+..... ...+.+ ++|+.+|++++|...++.. .....+.+.+|++.|+|+|+|+.++|+.++...
T Consensus 264 sR~~~~~~~~~----~~~~~v~~l~~L~~~ea~~L~~~~~~~~----~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~ 335 (591)
T 1z6t_A 264 TRDKSVTDSVM----GPKYVVPVESSLGKEKGLEILSLFVNMK----KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP 335 (591)
T ss_dssp ESCGGGGTTCC----SCEEEEECCSSCCHHHHHHHHHHHHTSC----GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST
T ss_pred CCCcHHHHhcC----CCceEeecCCCCCHHHHHHHHHHHhCCC----cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc
Confidence 99987543221 233444 5899999999999987431 122235689999999999999999999997653
Q ss_pred ChhhHHHHHhcccccc--------ccCCCChhHHHHHhhhcCChhHHHHHhHhccCCCCCccChHHHHHHHHhcccccCC
Q 036466 269 DEHDWEYVRDNDIWKL--------RQAPDDILPALRLSYDQLPPHLKQCFAYCSIFPKDYEFASVHLVQLWMAHGLLQSP 340 (727)
Q Consensus 269 ~~~~w~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~L~~~~~~~~~~la~f~~~~~~~~~~l~~~w~~~~~~~~~ 340 (727)
..|........... ......+..++..+|+.|+++.|.||.++|+||+++.++...+...|.+.
T Consensus 336 --~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~------ 407 (591)
T 1z6t_A 336 --NRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME------ 407 (591)
T ss_dssp --TCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC------
T ss_pred --hhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC------
Confidence 35765543221111 11123688899999999999999999999999999999988888888532
Q ss_pred CCCchHHHHHHHHHHHHHhCCcceecCCCCCCCceehhhHhhHHHHHHHHHhc
Q 036466 341 NKNEELENIGMRYFKELCSRSFFQDLGDLLPGLEVFNFQIHDLMHDLALLVAK 393 (727)
Q Consensus 341 ~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~~~~~~~~h~li~~~~~~~~~ 393 (727)
.+.+...+.+|.+++|+...... ....|+||++++++++....
T Consensus 408 ------~~~~~~~l~~L~~~~Ll~~~~~~----~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 408 ------TEEVEDILQEFVNKSLLFCDRNG----KSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp ------HHHHHHHHHHHHHTTSSEEEEET----TEEEEECCHHHHHHHHHHTG
T ss_pred ------HHHHHHHHHHHHhCcCeEEecCC----CccEEEEcHHHHHHHHhhhh
Confidence 23577899999999999864322 34579999999999998743
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.93 E-value=1.6e-25 Score=258.46 Aligned_cols=286 Identities=20% Similarity=0.232 Sum_probs=146.6
Q ss_pred CCcceEEEecCCCcc-ccccccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcccccCceeE
Q 036466 429 SKSLRVLVLTNSAIE-VLPRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFV 507 (727)
Q Consensus 429 ~~~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 507 (727)
+++|+.|++++|.+. .+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|...+.+|..+..+++|+.|+
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 472 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEE
Confidence 444555555555444 3444444455555555555544444444444555555555554444444444444555555555
Q ss_pred ecccccc-cccccCCCCCCCcEEeccccCCchhhhhhccCCCCcCeeecccCcCCCcCccccccCcccceeecccccccc
Q 036466 508 VTTKQKS-LLESGIGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNACPRLNLLPPAMKYLSSLERLIFDECESLS 586 (727)
Q Consensus 508 l~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~ 586 (727)
+++|.+. .+|..+..+++|++|++++|.....+|..++.+++|+.|++++|...+.+|..+..+++|+.|++++|....
T Consensus 473 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g 552 (768)
T 3rgz_A 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred ecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCC
Confidence 5555444 334444444555555555544444444444445555555555544444444444445555555544442210
Q ss_pred cccc-----------------------------------------------------------ccccccCCCCCCCCCCc
Q 036466 587 LSLN-----------------------------------------------------------MEMKEEGSHHDRKNVGS 607 (727)
Q Consensus 587 ~~~~-----------------------------------------------------------~~~~~~~~~~~~~~~~~ 607 (727)
.... ......|.++..+..++
T Consensus 553 ~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~ 632 (768)
T 3rgz_A 553 TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 632 (768)
T ss_dssp BCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSB
T ss_pred cCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccc
Confidence 0000 00111223344555566
Q ss_pred eeeEEEecCCCCCCCcchhhhcCCCCcccEEEecCCCCccccCccCccccccccccccccccccccCccCCCCCccCeee
Q 036466 608 HLRTLYVARLTPLLELPQWLLQGSSKTLQTLAIGDCPNFMALPGSLKDLEALENLVIGICPKLSSLPEGMHHLTTLKTLA 687 (727)
Q Consensus 608 ~L~~L~L~~~~~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~ 687 (727)
+|+.|+|++|.....+|..+ +.+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|+
T Consensus 633 ~L~~LdLs~N~l~g~ip~~l--~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 710 (768)
T 3rgz_A 633 SMMFLDMSYNMLSGYIPKEI--GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID 710 (768)
T ss_dssp CCCEEECCSSCCBSCCCGGG--GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEE
T ss_pred cccEEECcCCcccccCCHHH--hccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEE
Confidence 77777777777666777666 5667777777777777777777777777777777777777777777777777777776
Q ss_pred ccCCc-----------------------chhh----hcCCCCCCCCCccCCCCcee
Q 036466 688 IEECP-----------------------ALCE----RCKPLTGEDWPKIAHIPQIV 716 (727)
Q Consensus 688 l~~c~-----------------------~l~~----~~~~~~~~~~~~~~~~~~~~ 716 (727)
+++|+ .+|. .|....+++|++++|.+.++
T Consensus 711 ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~~~ 766 (768)
T 3rgz_A 711 LSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHHHH 766 (768)
T ss_dssp CCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC--------------
T ss_pred CcCCcccccCCCchhhccCCHHHhcCCchhcCCCCcCCCCCccCCCCCCCCccccC
Confidence 66553 3332 36677777888888877653
No 6
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.92 E-value=1.8e-25 Score=229.08 Aligned_cols=251 Identities=18% Similarity=0.251 Sum_probs=209.4
Q ss_pred CcceEEEecCCCcc---ccccccCCCCcCcEEeccC-CccccccCccccCCCCCCEeecCCCCCCcccChhhcccccCce
Q 036466 430 KSLRVLVLTNSAIE---VLPRKMGNLKQLRHLDLSG-NRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRM 505 (727)
Q Consensus 430 ~~L~~L~l~~~~~~---~l~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 505 (727)
.+++.|+++++.+. .+|..+..+++|++|++++ |.+.+.+|..+..+++|++|++++|.+.+.+|..+.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 57888899988887 4788888889999999985 7767788888888899999999888777788888888999999
Q ss_pred eEecccccc-cccccCCCCCCCcEEeccccCCchhhhhhccCCC-CcCeeecccCcCCCcCccccccCcccceeeccccc
Q 036466 506 FVVTTKQKS-LLESGIGCLSSLRFLMISNCGNLEYLFEDIDQLS-VLRSLVVNACPRLNLLPPAMKYLSSLERLIFDECE 583 (727)
Q Consensus 506 L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 583 (727)
|++++|.+. .+|..+..+++|++|++++|.....+|..+..++ +|+.|++++|...+.+|..+..++ |+.|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 999998888 6777788889999999988876667888888887 899999998887777788887776 9999988874
Q ss_pred cccccccccccccCCCCCCCCCCceeeEEEecCCCCCCCcchhhhcCCCCcccEEEecCCCCccccCccCcccccccccc
Q 036466 584 SLSLSLNMEMKEEGSHHDRKNVGSHLRTLYVARLTPLLELPQWLLQGSSKTLQTLAIGDCPNFMALPGSLKDLEALENLV 663 (727)
Q Consensus 584 ~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ 663 (727)
... ..+..+..+++|+.|+|++|......+. + ..+++|++|+|++|.+.+.+|..+..+++|+.|+
T Consensus 209 l~~-----------~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~--~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 274 (313)
T 1ogq_A 209 LEG-----------DASVLFGSDKNTQKIHLAKNSLAFDLGK-V--GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLN 274 (313)
T ss_dssp EEE-----------CCGGGCCTTSCCSEEECCSSEECCBGGG-C--CCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEE
T ss_pred ccC-----------cCCHHHhcCCCCCEEECCCCceeeecCc-c--cccCCCCEEECcCCcccCcCChHHhcCcCCCEEE
Confidence 322 2355567788999999999876555554 3 5689999999999998888999999999999999
Q ss_pred ccccccccccCccCCCCCccCeeeccCCcchhh
Q 036466 664 IGICPKLSSLPEGMHHLTTLKTLAIEECPALCE 696 (727)
Q Consensus 664 l~~~~~~~~l~~~l~~l~~L~~L~l~~c~~l~~ 696 (727)
+++|.+.+.+|.. ..+++|+.+++.+||.++.
T Consensus 275 Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 275 VSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp CCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred CcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence 9999988888875 8899999999999998754
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.92 E-value=1.8e-24 Score=249.71 Aligned_cols=299 Identities=13% Similarity=0.117 Sum_probs=243.9
Q ss_pred CCeeEEEeccCCCcchhhhhhhhhcCCC-cceEEEecCCCcc-ccccccCC--CCcCcEEeccCCccccccCccccCCCC
Q 036466 403 GRVRTILFPIDDERTSQSFVTSCISKSK-SLRVLVLTNSAIE-VLPRKMGN--LKQLRHLDLSGNRKIKKLPNSICELQS 478 (727)
Q Consensus 403 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~-~l~~~~~~--l~~L~~L~l~~~~~~~~~~~~~~~l~~ 478 (727)
..++.+.+... . .....+..+..++ +|++|++++|.+. .+|..+.. +++|++|++++|.+.+.+|..+..+++
T Consensus 343 ~~L~~L~Ls~n--~-l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~ 419 (768)
T 3rgz_A 343 RGLKVLDLSFN--E-FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSE 419 (768)
T ss_dssp TTCCEEECCSS--E-EEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTT
T ss_pred CCCCEEeCcCC--c-cCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCC
Confidence 45666665421 1 1113445566666 9999999999987 45666665 789999999999988889999999999
Q ss_pred CCEeecCCCCCCcccChhhcccccCceeEecccccc-cccccCCCCCCCcEEeccccCCchhhhhhccCCCCcCeeeccc
Q 036466 479 LQTLNLGDCLELEELPKDIRYLVSLRMFVVTTKQKS-LLESGIGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNA 557 (727)
Q Consensus 479 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~ 557 (727)
|++|++++|...+.+|..+..+++|+.|++++|.+. .+|..+..+++|++|++++|.....+|..+..+++|+.|++++
T Consensus 420 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~ 499 (768)
T 3rgz_A 420 LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSN 499 (768)
T ss_dssp CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred CCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccC
Confidence 999999999888889999999999999999999998 6777889999999999999987778889999999999999999
Q ss_pred CcCCCcCccccccCcccceeeccccccccccccccccccCCCCCCCCCCceeeEEEecCCCCCCCcchhhhc--------
Q 036466 558 CPRLNLLPPAMKYLSSLERLIFDECESLSLSLNMEMKEEGSHHDRKNVGSHLRTLYVARLTPLLELPQWLLQ-------- 629 (727)
Q Consensus 558 ~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~-------- 629 (727)
|...+.+|.++..+++|++|++++|... +.++..+..+++|+.|+|++|.....+|..+..
T Consensus 500 N~l~~~~p~~~~~l~~L~~L~L~~N~l~-----------~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~ 568 (768)
T 3rgz_A 500 NRLTGEIPKWIGRLENLAILKLSNNSFS-----------GNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAAN 568 (768)
T ss_dssp SCCCSCCCGGGGGCTTCCEEECCSSCCE-----------EECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCS
T ss_pred CccCCcCChHHhcCCCCCEEECCCCccc-----------CcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhh
Confidence 9988889999999999999999998443 334666778889999999998766555543311
Q ss_pred ------------------------------------------------------------CCCCcccEEEecCCCCcccc
Q 036466 630 ------------------------------------------------------------GSSKTLQTLAIGDCPNFMAL 649 (727)
Q Consensus 630 ------------------------------------------------------------~~~~~L~~L~L~~~~~~~~~ 649 (727)
..+++|+.|+|++|.+.+.+
T Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~i 648 (768)
T 3rgz_A 569 FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI 648 (768)
T ss_dssp TTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCC
T ss_pred ccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccC
Confidence 23689999999999999999
Q ss_pred CccCccccccccccccccccccccCccCCCCCccCeeeccCCcchhhhcCCCCCCCCC---ccCCCCceeecccccc
Q 036466 650 PGSLKDLEALENLVIGICPKLSSLPEGMHHLTTLKTLAIEECPALCERCKPLTGEDWP---KIAHIPQIVFDGEMIK 723 (727)
Q Consensus 650 ~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 723 (727)
|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|++++|.. .|.++. .+..+..+++..+++.
T Consensus 649 p~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l--------~g~ip~~l~~l~~L~~L~ls~N~l~ 717 (768)
T 3rgz_A 649 PKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL--------DGRIPQAMSALTMLTEIDLSNNNLS 717 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC--------EECCCGGGGGCCCCSEEECCSSEEE
T ss_pred CHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcc--------cCcCChHHhCCCCCCEEECcCCccc
Confidence 99999999999999999999999999999999999999999763 333443 3344555666666654
No 8
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.91 E-value=1.2e-23 Score=228.47 Aligned_cols=312 Identities=14% Similarity=0.064 Sum_probs=176.0
Q ss_pred CCeeEEEeccCCCcchhhhhhhhhcCCCcceEEEecCCCcc-cc-ccccCCCCcCcEEeccCCccccccCccccCCCCCC
Q 036466 403 GRVRTILFPIDDERTSQSFVTSCISKSKSLRVLVLTNSAIE-VL-PRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQ 480 (727)
Q Consensus 403 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 480 (727)
..++.+.+.... .....+..|.++++|++|++++|.+. .+ +..+..+++|++|++++|.+.+..|..+..+++|+
T Consensus 30 ~~l~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 106 (455)
T 3v47_A 30 AHVNYVDLSLNS---IAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLE 106 (455)
T ss_dssp TTCCEEECCSSC---CCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCC
T ss_pred CccCEEEecCCc---cCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCC
Confidence 345555554221 11233455667777777777777664 33 34566777777777777765555566677777777
Q ss_pred EeecCCCCCCcccChh--hcccccCceeEecccccccc-ccc-CCCCCCCcEEeccccCCchhhhhhccCC--CCcCeee
Q 036466 481 TLNLGDCLELEELPKD--IRYLVSLRMFVVTTKQKSLL-ESG-IGCLSSLRFLMISNCGNLEYLFEDIDQL--SVLRSLV 554 (727)
Q Consensus 481 ~L~l~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~-~~~-~~~l~~L~~L~l~~~~~~~~l~~~l~~l--~~L~~L~ 554 (727)
+|++++|...+..+.. +..+++|++|++++|.+... |.. +..+++|++|++++|......+..+..+ ++|+.|+
T Consensus 107 ~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~ 186 (455)
T 3v47_A 107 VLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLR 186 (455)
T ss_dssp EEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEE
T ss_pred EEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccc
Confidence 7777776655544433 66677777777777777644 322 5667777777777765433333333332 2233333
Q ss_pred cccCcCCCcCccc--------cccCcccceeecccccccc----------------------------------------
Q 036466 555 VNACPRLNLLPPA--------MKYLSSLERLIFDECESLS---------------------------------------- 586 (727)
Q Consensus 555 l~~~~~~~~~~~~--------l~~l~~L~~L~l~~~~~l~---------------------------------------- 586 (727)
+++|......+.. +..+++|++|++++|....
T Consensus 187 l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 266 (455)
T 3v47_A 187 LSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDN 266 (455)
T ss_dssp CTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCT
T ss_pred cccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcc
Confidence 3332221110000 1122344444444442110
Q ss_pred ------------ccccccccccCCCCCCCCCCceeeEEEecCCCCCCCcchhhhcCCCCcccEEEecCCCCccccCccCc
Q 036466 587 ------------LSLNMEMKEEGSHHDRKNVGSHLRTLYVARLTPLLELPQWLLQGSSKTLQTLAIGDCPNFMALPGSLK 654 (727)
Q Consensus 587 ------------~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~ 654 (727)
..........+..+..+..+++|+.|+|++|......+..+ ..+++|++|+|++|.+.+..+..+.
T Consensus 267 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~ 344 (455)
T 3v47_A 267 FTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAF--WGLTHLLKLNLSQNFLGSIDSRMFE 344 (455)
T ss_dssp TTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTT--TTCTTCCEEECCSSCCCEECGGGGT
T ss_pred cccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHh--cCcccCCEEECCCCccCCcChhHhc
Confidence 00000000111124445566777777777776554444444 5677788888887766555566677
Q ss_pred cccccccccccccccccccCccCCCCCccCeeeccCCcchhhhcCCCCCCCCCccCCCCceeeccccccc
Q 036466 655 DLEALENLVIGICPKLSSLPEGMHHLTTLKTLAIEECPALCERCKPLTGEDWPKIAHIPQIVFDGEMIKS 724 (727)
Q Consensus 655 ~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (727)
.+++|++|++++|...+..|..+..+++|+.|++++|.. .......+..+.++..+.+.++.+..
T Consensus 345 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l-----~~~~~~~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 345 NLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQL-----KSVPDGIFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-----SCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CcccCCEEECCCCcccccChhhccccccccEEECCCCcc-----ccCCHhHhccCCcccEEEccCCCccc
Confidence 778888888888776665566777788888888887752 22222233455667777777776653
No 9
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=1.9e-23 Score=228.24 Aligned_cols=272 Identities=18% Similarity=0.168 Sum_probs=181.0
Q ss_pred CCeeEEEeccCCCcchhhhhhhhhcCCCcceEEEecCCCcccc-ccccCCCCcCcEEeccCCccccccC-ccccCCCCCC
Q 036466 403 GRVRTILFPIDDERTSQSFVTSCISKSKSLRVLVLTNSAIEVL-PRKMGNLKQLRHLDLSGNRKIKKLP-NSICELQSLQ 480 (727)
Q Consensus 403 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~ 480 (727)
..++.+.+.... .....+..|.++++|++|++++|.+..+ |..+..+++|++|++++|.+. .+| ..+..+++|+
T Consensus 32 ~~l~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~ 107 (477)
T 2id5_A 32 TETRLLDLGKNR---IKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLT 107 (477)
T ss_dssp TTCSEEECCSSC---CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCTTSSTTCTTCC
T ss_pred CCCcEEECCCCc---cceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC-ccCcccccCCCCCC
Confidence 455666664322 2223355788899999999999998866 667889999999999998844 444 4578889999
Q ss_pred EeecCCCCCCcccChhhcccccCceeEecccccccc-cccCCCCCCCcEEeccccCCchhhhhhccCCCCcCeeecccCc
Q 036466 481 TLNLGDCLELEELPKDIRYLVSLRMFVVTTKQKSLL-ESGIGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNACP 559 (727)
Q Consensus 481 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~ 559 (727)
+|++++|......+..+..+++|++|++++|.+..+ +..+..+++|++|++++|......+..+..+++|+.|++++|.
T Consensus 108 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 187 (477)
T 2id5_A 108 KLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN 187 (477)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCC
T ss_pred EEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCc
Confidence 999999887777788888999999999999988844 4568888999999999875544444567888999999999887
Q ss_pred CCCcCccccccCcccceeeccccccccccccccccccCCCCCCCCCCceeeEEEecCCCCCCCcchhhhcCCCCcccEEE
Q 036466 560 RLNLLPPAMKYLSSLERLIFDECESLSLSLNMEMKEEGSHHDRKNVGSHLRTLYVARLTPLLELPQWLLQGSSKTLQTLA 639 (727)
Q Consensus 560 ~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~~~L~~L~ 639 (727)
.....+..+..+++|+.|++++|..+... +.......+|+.|+|++|... .++...+ ..+++|+.|+
T Consensus 188 i~~~~~~~~~~l~~L~~L~l~~~~~~~~~-----------~~~~~~~~~L~~L~l~~n~l~-~~~~~~~-~~l~~L~~L~ 254 (477)
T 2id5_A 188 INAIRDYSFKRLYRLKVLEISHWPYLDTM-----------TPNCLYGLNLTSLSITHCNLT-AVPYLAV-RHLVYLRFLN 254 (477)
T ss_dssp CCEECTTCSCSCTTCCEEEEECCTTCCEE-----------CTTTTTTCCCSEEEEESSCCC-SCCHHHH-TTCTTCCEEE
T ss_pred CcEeChhhcccCcccceeeCCCCcccccc-----------CcccccCccccEEECcCCccc-ccCHHHh-cCccccCeeE
Confidence 76555667788888999998887554322 222223335555555555322 3332111 3455555555
Q ss_pred ecCCCCccccCccCccccccccccccccccccccCccCCCCCccCeeeccCC
Q 036466 640 IGDCPNFMALPGSLKDLEALENLVIGICPKLSSLPEGMHHLTTLKTLAIEEC 691 (727)
Q Consensus 640 L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~c 691 (727)
|++|.+.+..+..+..+++|+.|+|++|......|..+..+++|+.|++++|
T Consensus 255 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 306 (477)
T 2id5_A 255 LSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN 306 (477)
T ss_dssp CCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS
T ss_pred CCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCC
Confidence 5555444333344455555555555555444433444445555555555554
No 10
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.90 E-value=2.4e-23 Score=238.38 Aligned_cols=159 Identities=18% Similarity=0.243 Sum_probs=126.2
Q ss_pred hhhhhcCCCcceEEEecCCCccc------------------cccccC--CCCcCcEEeccCCccccccCccccCCCCCCE
Q 036466 422 VTSCISKSKSLRVLVLTNSAIEV------------------LPRKMG--NLKQLRHLDLSGNRKIKKLPNSICELQSLQT 481 (727)
Q Consensus 422 ~~~~~~~~~~L~~L~l~~~~~~~------------------l~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 481 (727)
+|..+.++++|++|++++|.+.. +|..+. .+++|++|++++|.+.+.+|..+.++++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 56678888889999999888887 888877 8888999999888888888888888888888
Q ss_pred eecCCCC-CCc-ccChhhcccc-------cCceeEecccccccccc--cCCCCCCCcEEeccccCCchhhhhhccCCCCc
Q 036466 482 LNLGDCL-ELE-ELPKDIRYLV-------SLRMFVVTTKQKSLLES--GIGCLSSLRFLMISNCGNLEYLFEDIDQLSVL 550 (727)
Q Consensus 482 L~l~~~~-~~~-~~~~~l~~l~-------~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L 550 (727)
|++++|. +.+ .+|..+.++. +|++|++++|.+..+|. .+..+++|+.|++++|... .+| .+..+++|
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L 597 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKL 597 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEE
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcc
Confidence 8888887 555 6777776666 88888888888887777 7888888888888887544 666 77777888
Q ss_pred CeeecccCcCCCcCccccccCcc-cceeeccccc
Q 036466 551 RSLVVNACPRLNLLPPAMKYLSS-LERLIFDECE 583 (727)
Q Consensus 551 ~~L~l~~~~~~~~~~~~l~~l~~-L~~L~l~~~~ 583 (727)
+.|++++|... .+|..+..+++ |+.|++++|.
T Consensus 598 ~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~ 630 (876)
T 4ecn_A 598 TDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNK 630 (876)
T ss_dssp SEEECCSSCCS-CCCTTSCEECTTCCEEECCSSC
T ss_pred eEEECcCCccc-cchHHHhhccccCCEEECcCCC
Confidence 88888877665 67777777777 7777777764
No 11
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.90 E-value=3.4e-23 Score=224.88 Aligned_cols=277 Identities=16% Similarity=0.084 Sum_probs=210.6
Q ss_pred CCeeEEEeccCCCcchhhhhhhhhcCCCcceEEEecCCCcccc-ccccCCCCcCcEEeccCCccccccCcc--ccCCCCC
Q 036466 403 GRVRTILFPIDDERTSQSFVTSCISKSKSLRVLVLTNSAIEVL-PRKMGNLKQLRHLDLSGNRKIKKLPNS--ICELQSL 479 (727)
Q Consensus 403 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~l~~L 479 (727)
..++.+.+... .......+..|..+++|++|++++|.+..+ |..+..+++|++|++++|.+.+..|.. +..+++|
T Consensus 54 ~~L~~L~L~~n--~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L 131 (455)
T 3v47_A 54 QDLQFLKVEQQ--TPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSL 131 (455)
T ss_dssp TTCCEEECCCC--STTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTC
T ss_pred ccccEEECcCC--cccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccC
Confidence 56777776532 222233456688899999999999998865 677889999999999999866555544 7888999
Q ss_pred CEeecCCCCCCcccChh-hcccccCceeEecccccccc-cccCC----------------------------------CC
Q 036466 480 QTLNLGDCLELEELPKD-IRYLVSLRMFVVTTKQKSLL-ESGIG----------------------------------CL 523 (727)
Q Consensus 480 ~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~-~~~~~----------------------------------~l 523 (727)
++|++++|......|.. +.++++|+.|++++|.+... +..+. .+
T Consensus 132 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~ 211 (455)
T 3v47_A 132 EMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKN 211 (455)
T ss_dssp CEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTT
T ss_pred CEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhcccccccccccc
Confidence 99999988777666655 78899999999999888733 22222 34
Q ss_pred CCCcEEeccccCCchhhhhhccC---------------------------------------CCCcCeeecccCcCCCcC
Q 036466 524 SSLRFLMISNCGNLEYLFEDIDQ---------------------------------------LSVLRSLVVNACPRLNLL 564 (727)
Q Consensus 524 ~~L~~L~l~~~~~~~~l~~~l~~---------------------------------------l~~L~~L~l~~~~~~~~~ 564 (727)
++|++|++++|......+..+.. +++|+.|++++|...+..
T Consensus 212 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 291 (455)
T 3v47_A 212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALL 291 (455)
T ss_dssp CEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEEC
T ss_pred ceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccc
Confidence 67888899888665544433321 257888888888777777
Q ss_pred ccccccCcccceeeccccccccccccccccccCCCCCCCCCCceeeEEEecCCCCCCCcchhhhcCCCCcccEEEecCCC
Q 036466 565 PPAMKYLSSLERLIFDECESLSLSLNMEMKEEGSHHDRKNVGSHLRTLYVARLTPLLELPQWLLQGSSKTLQTLAIGDCP 644 (727)
Q Consensus 565 ~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~~~L~~L~L~~~~ 644 (727)
|..+..+++|++|++++|..... .+..+..+++|+.|+|++|......+..+ ..+++|++|+|++|.
T Consensus 292 ~~~~~~l~~L~~L~Ls~n~l~~~-----------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~Ls~N~ 358 (455)
T 3v47_A 292 KSVFSHFTDLEQLTLAQNEINKI-----------DDNAFWGLTHLLKLNLSQNFLGSIDSRMF--ENLDKLEVLDLSYNH 358 (455)
T ss_dssp TTTTTTCTTCCEEECTTSCCCEE-----------CTTTTTTCTTCCEEECCSSCCCEECGGGG--TTCTTCCEEECCSSC
T ss_pred hhhcccCCCCCEEECCCCccccc-----------ChhHhcCcccCCEEECCCCccCCcChhHh--cCcccCCEEECCCCc
Confidence 78888899999999988754321 24566778999999999997655556555 678999999999998
Q ss_pred CccccCccCccccccccccccccccccccCccCCCCCccCeeeccCCcch
Q 036466 645 NFMALPGSLKDLEALENLVIGICPKLSSLPEGMHHLTTLKTLAIEECPAL 694 (727)
Q Consensus 645 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~c~~l 694 (727)
+.+..|..+..+++|++|++++|.+..-.+..+..+++|+.|++++||.-
T Consensus 359 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 359 IRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcc
Confidence 87777888999999999999999766544445689999999999988753
No 12
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.90 E-value=1.3e-23 Score=216.45 Aligned_cols=222 Identities=26% Similarity=0.369 Sum_probs=162.2
Q ss_pred CCCcceEEEecCCCccccccccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcccccCceeE
Q 036466 428 KSKSLRVLVLTNSAIEVLPRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFV 507 (727)
Q Consensus 428 ~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 507 (727)
..+.++.|++++|.+..+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+. .+|..+.++++|++|+
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 357899999999999999988888999999999999855 88888899999999999987665 7788888899999999
Q ss_pred ecccccc-cccccCCC---------CCCCcEEeccccCCchhhhhhccCCCCcCeeecccCcCCCcCccccccCccccee
Q 036466 508 VTTKQKS-LLESGIGC---------LSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNACPRLNLLPPAMKYLSSLERL 577 (727)
Q Consensus 508 l~~~~~~-~~~~~~~~---------l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 577 (727)
+++|... .+|..+.. +++|++|++++|.. ..+|..+..+++|+.|++++|... .+|..+..+++
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l-~~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~---- 230 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI-RSLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPK---- 230 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECC-CCCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTT----
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCc-CcchHhhcCCCCCCEEEccCCCCC-cCchhhccCCC----
Confidence 9886554 55544433 55666666665532 245555555666666666655443 34444444444
Q ss_pred eccccccccccccccccccCCCCCCCCCCceeeEEEecCCCCCCCcchhhhcCCCCcccEEEecCCCCccccCccCcccc
Q 036466 578 IFDECESLSLSLNMEMKEEGSHHDRKNVGSHLRTLYVARLTPLLELPQWLLQGSSKTLQTLAIGDCPNFMALPGSLKDLE 657 (727)
Q Consensus 578 ~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~ 657 (727)
|+.|+|++|.....+|..+ ..+++|++|+|++|+..+.+|..+..++
T Consensus 231 -------------------------------L~~L~Ls~n~~~~~~p~~~--~~l~~L~~L~L~~n~~~~~~p~~~~~l~ 277 (328)
T 4fcg_A 231 -------------------------------LEELDLRGCTALRNYPPIF--GGRAPLKRLILKDCSNLLTLPLDIHRLT 277 (328)
T ss_dssp -------------------------------CCEEECTTCTTCCBCCCCT--TCCCCCCEEECTTCTTCCBCCTTGGGCT
T ss_pred -------------------------------CCEEECcCCcchhhhHHHh--cCCCCCCEEECCCCCchhhcchhhhcCC
Confidence 4555555555555555555 5677888888888888888887788888
Q ss_pred ccccccccccccccccCccCCCCCccCeeeccC
Q 036466 658 ALENLVIGICPKLSSLPEGMHHLTTLKTLAIEE 690 (727)
Q Consensus 658 ~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~ 690 (727)
+|++|+|++|+.++.+|..++.+++|+.+++..
T Consensus 278 ~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 278 QLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp TCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred CCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 888888888888888888888888888887764
No 13
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.90 E-value=2.2e-23 Score=234.93 Aligned_cols=266 Identities=14% Similarity=0.130 Sum_probs=206.2
Q ss_pred hhhhhcCCCcceEEEecCCCccc------------------cccccC--CCCcCcEEeccCCccccccCccccCCCCCCE
Q 036466 422 VTSCISKSKSLRVLVLTNSAIEV------------------LPRKMG--NLKQLRHLDLSGNRKIKKLPNSICELQSLQT 481 (727)
Q Consensus 422 ~~~~~~~~~~L~~L~l~~~~~~~------------------l~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 481 (727)
+|..++++++|++|++++|.+.. +|..+. .+++|++|++++|.+.+.+|..+.++++|++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 56678899999999999999987 899888 9999999999999988889999999999999
Q ss_pred eecCCCC-CCc-ccChhhccc------ccCceeEecccccccccc--cCCCCCCCcEEeccccCCchhhhhhccCCCCcC
Q 036466 482 LNLGDCL-ELE-ELPKDIRYL------VSLRMFVVTTKQKSLLES--GIGCLSSLRFLMISNCGNLEYLFEDIDQLSVLR 551 (727)
Q Consensus 482 L~l~~~~-~~~-~~~~~l~~l------~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~ 551 (727)
|++++|. ..+ .+|..++++ ++|++|++++|.++.+|. .++.+++|++|++++|.....+| .+..+++|+
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~ 356 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLA 356 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEES
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCC
Confidence 9999987 666 788888776 899999999999998887 78999999999999987665777 888888899
Q ss_pred eeecccCcCCCcCccccccCcc-cceeecccccccccccc--------------ccccccCCCCCCCC-------CCcee
Q 036466 552 SLVVNACPRLNLLPPAMKYLSS-LERLIFDECESLSLSLN--------------MEMKEEGSHHDRKN-------VGSHL 609 (727)
Q Consensus 552 ~L~l~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~l~~~~~--------------~~~~~~~~~~~~~~-------~~~~L 609 (727)
.|++++|... .+|..+..+++ |++|++++|....+... ..+...+..+..+. .+++|
T Consensus 357 ~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L 435 (636)
T 4eco_A 357 SLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINV 435 (636)
T ss_dssp EEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCE
T ss_pred EEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCC
Confidence 9988888765 77777888888 88888888753211100 00011122233333 56688
Q ss_pred eEEEecCCCCCCCcchhhhcCCCCcccEEEecCCCCccccCccCcc--------ccccccccccccccccccCccCC--C
Q 036466 610 RTLYVARLTPLLELPQWLLQGSSKTLQTLAIGDCPNFMALPGSLKD--------LEALENLVIGICPKLSSLPEGMH--H 679 (727)
Q Consensus 610 ~~L~L~~~~~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~--------l~~L~~L~l~~~~~~~~l~~~l~--~ 679 (727)
+.|+|++|... .+|..+. ..+++|++|+|++|.+. .+|..... +++|+.|++++|.+. .+|..+. .
T Consensus 436 ~~L~Ls~N~l~-~lp~~~~-~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~ 511 (636)
T 4eco_A 436 SSINLSNNQIS-KFPKELF-STGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATT 511 (636)
T ss_dssp EEEECCSSCCC-SCCTHHH-HTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTT
T ss_pred CEEECcCCccC-cCCHHHH-ccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhcc
Confidence 88898888654 5665442 35788999999988765 56554322 238999999998765 7888776 8
Q ss_pred CCccCeeeccCCcc
Q 036466 680 LTTLKTLAIEECPA 693 (727)
Q Consensus 680 l~~L~~L~l~~c~~ 693 (727)
+++|+.|++++|+.
T Consensus 512 l~~L~~L~Ls~N~l 525 (636)
T 4eco_A 512 LPYLVGIDLSYNSF 525 (636)
T ss_dssp CTTCCEEECCSSCC
T ss_pred CCCcCEEECCCCCC
Confidence 99999999999863
No 14
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.89 E-value=1.7e-22 Score=220.67 Aligned_cols=251 Identities=17% Similarity=0.136 Sum_probs=208.5
Q ss_pred CcceEEEecCCCcccc-ccccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcccccCceeEe
Q 036466 430 KSLRVLVLTNSAIEVL-PRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVV 508 (727)
Q Consensus 430 ~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 508 (727)
+++++|++++|.+..+ +..|..+++|++|++++|.+.+..|..+.++++|++|++++|......+..+.++++|++|++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 5899999999999977 457999999999999999866666888999999999999997755544456889999999999
Q ss_pred cccccccc-cccCCCCCCCcEEeccccCCchhhhhhccCCCCcCeeecccCcCCCcCccccccCcccceeeccccccccc
Q 036466 509 TTKQKSLL-ESGIGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNACPRLNLLPPAMKYLSSLERLIFDECESLSL 587 (727)
Q Consensus 509 ~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~ 587 (727)
++|.+... +..+..+++|++|++++|......+..+..+++|+.|++++|......+..+..+++|+.|++++|.....
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~ 191 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI 191 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEE
T ss_pred CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEe
Confidence 99999844 56789999999999999876555567899999999999999987655556788899999999998754322
Q ss_pred cccccccccCCCCCCCCCCceeeEEEecCCCCCCCcchhhhcCCCCcccEEEecCCCCccccCccCcccccccccccccc
Q 036466 588 SLNMEMKEEGSHHDRKNVGSHLRTLYVARLTPLLELPQWLLQGSSKTLQTLAIGDCPNFMALPGSLKDLEALENLVIGIC 667 (727)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~ 667 (727)
. ...+..+++|+.|++++|.....++... ....+|++|+|++|.+.+..+..+..+++|+.|+|++|
T Consensus 192 ~-----------~~~~~~l~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 258 (477)
T 2id5_A 192 R-----------DYSFKRLYRLKVLEISHWPYLDTMTPNC--LYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN 258 (477)
T ss_dssp C-----------TTCSCSCTTCCEEEEECCTTCCEECTTT--TTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSS
T ss_pred C-----------hhhcccCcccceeeCCCCccccccCccc--ccCccccEEECcCCcccccCHHHhcCccccCeeECCCC
Confidence 1 3456678899999999998888887666 34569999999999765433356789999999999999
Q ss_pred ccccccCccCCCCCccCeeeccCCcc
Q 036466 668 PKLSSLPEGMHHLTTLKTLAIEECPA 693 (727)
Q Consensus 668 ~~~~~l~~~l~~l~~L~~L~l~~c~~ 693 (727)
.+....+..+..+++|+.|++++|..
T Consensus 259 ~l~~~~~~~~~~l~~L~~L~L~~n~l 284 (477)
T 2id5_A 259 PISTIEGSMLHELLRLQEIQLVGGQL 284 (477)
T ss_dssp CCCEECTTSCTTCTTCCEEECCSSCC
T ss_pred cCCccChhhccccccCCEEECCCCcc
Confidence 87665566788999999999999853
No 15
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.89 E-value=1.2e-22 Score=228.97 Aligned_cols=258 Identities=18% Similarity=0.105 Sum_probs=182.2
Q ss_pred hhhhhhcCCCcceEEEecCCCccccccccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccCh-hhcc
Q 036466 421 FVTSCISKSKSLRVLVLTNSAIEVLPRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPK-DIRY 499 (727)
Q Consensus 421 ~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~ 499 (727)
..+..|..+++|+.|++++|.+..+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.....+|. .+..
T Consensus 269 ~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 348 (606)
T 3t6q_A 269 ISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLEN 348 (606)
T ss_dssp CCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTT
T ss_pred cCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhc
Confidence 344557788899999999988888888888888999999988886655566788888888888888877656554 4778
Q ss_pred cccCceeEecccccccc---cccCCCCCCCcEEeccccCCchhhhhhccCCCCcCeeecccCcCCCcCcc-ccccCcccc
Q 036466 500 LVSLRMFVVTTKQKSLL---ESGIGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNACPRLNLLPP-AMKYLSSLE 575 (727)
Q Consensus 500 l~~L~~L~l~~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~ 575 (727)
+++|+.|++++|.+... +..+..+++|++|++++|......+..+..+++|+.|++++|......+. .+..+++|+
T Consensus 349 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 428 (606)
T 3t6q_A 349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLK 428 (606)
T ss_dssp CTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCC
T ss_pred cCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCC
Confidence 88888888888888744 45678888888888888766555667777888888888888776554443 367778888
Q ss_pred eeeccccccccccccccccccCCCCCCCCCCceeeEEEecCCCCCCC-cc--hhhhcCCCCcccEEEecCCCCccccCcc
Q 036466 576 RLIFDECESLSLSLNMEMKEEGSHHDRKNVGSHLRTLYVARLTPLLE-LP--QWLLQGSSKTLQTLAIGDCPNFMALPGS 652 (727)
Q Consensus 576 ~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~-l~--~~~~~~~~~~L~~L~L~~~~~~~~~~~~ 652 (727)
+|++++|.... ..+..+..+++|+.|+|++|..... ++ ..+ ..+++|++|++++|.+.+..|..
T Consensus 429 ~L~l~~n~l~~-----------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~ 495 (606)
T 3t6q_A 429 VLNLSHSLLDI-----------SSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSL--QTLGRLEILVLSFCDLSSIDQHA 495 (606)
T ss_dssp EEECTTCCCBT-----------TCTTTTTTCTTCCEEECTTCBCGGGEECSSCGG--GGCTTCCEEECTTSCCCEECTTT
T ss_pred EEECCCCccCC-----------cCHHHHhCCCCCCEEECCCCCCCccccccchhh--ccCCCccEEECCCCccCccChhh
Confidence 88888764321 1234455566777777777654331 11 122 44666777777777665555666
Q ss_pred CccccccccccccccccccccCccCCCCCccCeeeccCCc
Q 036466 653 LKDLEALENLVIGICPKLSSLPEGMHHLTTLKTLAIEECP 692 (727)
Q Consensus 653 l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~c~ 692 (727)
+..+++|++|++++|...+..|..+..+++| .|++++|.
T Consensus 496 ~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~ 534 (606)
T 3t6q_A 496 FTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNH 534 (606)
T ss_dssp TTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSC
T ss_pred hccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCc
Confidence 6667777777777776666566666666666 66666664
No 16
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=1.4e-22 Score=208.72 Aligned_cols=222 Identities=26% Similarity=0.347 Sum_probs=186.3
Q ss_pred CCeeEEEeccCCCcchhhhhhhhhcCCCcceEEEecCCCccccccccCCCCcCcEEeccCCccccccCccccCCCCCCEe
Q 036466 403 GRVRTILFPIDDERTSQSFVTSCISKSKSLRVLVLTNSAIEVLPRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTL 482 (727)
Q Consensus 403 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 482 (727)
..++.+.+..... ..++..+.++++|++|++++|.+..+|..+..+++|++|++++|.+. .+|..+..+++|++|
T Consensus 81 ~~l~~L~L~~n~l----~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 81 PGRVALELRSVPL----PQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp TTCCEEEEESSCC----SSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred cceeEEEccCCCc----hhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 4566777753222 24556677899999999999999999999999999999999999855 889999999999999
Q ss_pred ecCCCCCCcccChhhcc---------cccCceeEecccccccccccCCCCCCCcEEeccccCCchhhhhhccCCCCcCee
Q 036466 483 NLGDCLELEELPKDIRY---------LVSLRMFVVTTKQKSLLESGIGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSL 553 (727)
Q Consensus 483 ~l~~~~~~~~~~~~l~~---------l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L 553 (727)
++++|...+.+|..+.. +++|++|++++|.++.+|..+..+++|++|++++|.. ..+|..+..+++|+.|
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l-~~l~~~l~~l~~L~~L 234 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPL-SALGPAIHHLPKLEEL 234 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCC-CCCCGGGGGCTTCCEE
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCC-CcCchhhccCCCCCEE
Confidence 99999999988887665 9999999999999998888899999999999999754 4677889999999999
Q ss_pred ecccCcCCCcCccccccCcccceeeccccccccccccccccccCCCCCCCCCCceeeEEEecCCCCCCCcchhhhcCCCC
Q 036466 554 VVNACPRLNLLPPAMKYLSSLERLIFDECESLSLSLNMEMKEEGSHHDRKNVGSHLRTLYVARLTPLLELPQWLLQGSSK 633 (727)
Q Consensus 554 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~~ 633 (727)
++++|...+.+|..+..+++|+.|++++| .....+|..+ ..++
T Consensus 235 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n-----------------------------------~~~~~~p~~~--~~l~ 277 (328)
T 4fcg_A 235 DLRGCTALRNYPPIFGGRAPLKRLILKDC-----------------------------------SNLLTLPLDI--HRLT 277 (328)
T ss_dssp ECTTCTTCCBCCCCTTCCCCCCEEECTTC-----------------------------------TTCCBCCTTG--GGCT
T ss_pred ECcCCcchhhhHHHhcCCCCCCEEECCCC-----------------------------------Cchhhcchhh--hcCC
Confidence 99999988888887777777777766654 4444555555 5678
Q ss_pred cccEEEecCCCCccccCccCcccccccccccccc
Q 036466 634 TLQTLAIGDCPNFMALPGSLKDLEALENLVIGIC 667 (727)
Q Consensus 634 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~ 667 (727)
+|++|+|++|++.+.+|..+..+++|+.+++..+
T Consensus 278 ~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 278 QLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp TCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred CCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 8999999998888888888888888888888765
No 17
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.89 E-value=7.7e-23 Score=209.51 Aligned_cols=255 Identities=15% Similarity=0.111 Sum_probs=216.6
Q ss_pred CCeeEEEeccCCCcchhhhhhhhhcCCCcceEEEecC-CCcc-ccccccCCCCcCcEEeccCCccccccCccccCCCCCC
Q 036466 403 GRVRTILFPIDDERTSQSFVTSCISKSKSLRVLVLTN-SAIE-VLPRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQ 480 (727)
Q Consensus 403 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 480 (727)
.+++.+.+...... .....+..+.++++|++|++++ |.+. .+|..+..+++|++|++++|.+.+.+|..+..+++|+
T Consensus 50 ~~l~~L~L~~~~l~-~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLP-KPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCS-SCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCcc-CCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 57888887643222 1114566889999999999994 7777 6788899999999999999997778999999999999
Q ss_pred EeecCCCCCCcccChhhcccccCceeEecccccc-cccccCCCCC-CCcEEeccccCCchhhhhhccCCCCcCeeecccC
Q 036466 481 TLNLGDCLELEELPKDIRYLVSLRMFVVTTKQKS-LLESGIGCLS-SLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNAC 558 (727)
Q Consensus 481 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~l~-~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~ 558 (727)
+|++++|.+.+.+|..+..+++|++|++++|.++ .+|..+..++ +|++|++++|.....+|..+..++ |+.|++++|
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N 207 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN 207 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence 9999998888889999999999999999999998 7888888888 999999999877667888888887 999999999
Q ss_pred cCCCcCccccccCcccceeeccccccccccccccccccCCCCCCCCCCceeeEEEecCCCCCCCcchhhhcCCCCcccEE
Q 036466 559 PRLNLLPPAMKYLSSLERLIFDECESLSLSLNMEMKEEGSHHDRKNVGSHLRTLYVARLTPLLELPQWLLQGSSKTLQTL 638 (727)
Q Consensus 559 ~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~~~L~~L 638 (727)
...+..|..+..+++|+.|++++|..... ...+..+++|+.|+|++|.....+|..+ ..+++|++|
T Consensus 208 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~------------~~~~~~l~~L~~L~Ls~N~l~~~~p~~l--~~l~~L~~L 273 (313)
T 1ogq_A 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFD------------LGKVGLSKNLNGLDLRNNRIYGTLPQGL--TQLKFLHSL 273 (313)
T ss_dssp EEEECCGGGCCTTSCCSEEECCSSEECCB------------GGGCCCCTTCCEEECCSSCCEECCCGGG--GGCTTCCEE
T ss_pred cccCcCCHHHhcCCCCCEEECCCCceeee------------cCcccccCCCCEEECcCCcccCcCChHH--hcCcCCCEE
Confidence 88778888899999999999999754211 2225567899999999998877888877 678999999
Q ss_pred EecCCCCccccCccCccccccccccccccccccccC
Q 036466 639 AIGDCPNFMALPGSLKDLEALENLVIGICPKLSSLP 674 (727)
Q Consensus 639 ~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~ 674 (727)
+|++|.+.+.+|.. ..+++|+.|++.+|+.+...|
T Consensus 274 ~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 274 NVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp ECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred ECcCCcccccCCCC-ccccccChHHhcCCCCccCCC
Confidence 99999988888875 889999999999998765544
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.88 E-value=1.4e-22 Score=228.22 Aligned_cols=269 Identities=13% Similarity=0.073 Sum_probs=163.4
Q ss_pred CcceEEEecCCCcccccc--ccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhccccc-Ccee
Q 036466 430 KSLRVLVLTNSAIEVLPR--KMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVS-LRMF 506 (727)
Q Consensus 430 ~~L~~L~l~~~~~~~l~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~-L~~L 506 (727)
++|++|++++|.+..+|. .+..+++|++|++++|.+.+.+| .+..+++|++|++++|... .+|..+..+++ |++|
T Consensus 305 ~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L 382 (636)
T 4eco_A 305 EKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENL 382 (636)
T ss_dssp GTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEE
T ss_pred CCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEE
Confidence 556666666665555555 55556666666666555444555 4555556666666554433 55555555655 6666
Q ss_pred EecccccccccccCCCCC--CCcEEeccccCCchhhhhhcc-------CCCCcCeeecccCcCCCcCccc-cccCcccce
Q 036466 507 VVTTKQKSLLESGIGCLS--SLRFLMISNCGNLEYLFEDID-------QLSVLRSLVVNACPRLNLLPPA-MKYLSSLER 576 (727)
Q Consensus 507 ~l~~~~~~~~~~~~~~l~--~L~~L~l~~~~~~~~l~~~l~-------~l~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~ 576 (727)
++++|.++.+|..+..++ +|++|++++|......|..+. .+++|+.|++++|... .+|.. +..+++|+.
T Consensus 383 ~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~ 461 (636)
T 4eco_A 383 SFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSS 461 (636)
T ss_dssp ECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSE
T ss_pred EccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCE
Confidence 666666655555444433 566666666555444455454 4556666666665543 34433 234566666
Q ss_pred eeccccccccccccccccccCCCCCCC--------CCCceeeEEEecCCCCCCCcchhhhcCCCCcccEEEecCCCCccc
Q 036466 577 LIFDECESLSLSLNMEMKEEGSHHDRK--------NVGSHLRTLYVARLTPLLELPQWLLQGSSKTLQTLAIGDCPNFMA 648 (727)
Q Consensus 577 L~l~~~~~l~~~~~~~~~~~~~~~~~~--------~~~~~L~~L~L~~~~~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~ 648 (727)
|++++|... .++... ..+++|+.|+|++|... .+|..+....+++|+.|+|++|.+.+
T Consensus 462 L~Ls~N~l~------------~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~- 527 (636)
T 4eco_A 462 INLMGNMLT------------EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK- 527 (636)
T ss_dssp EECCSSCCS------------BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-
T ss_pred EECCCCCCC------------CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-
Confidence 666665322 122222 22338888888888654 67766622377888888888887665
Q ss_pred cCccCcccccccccccc------ccccccccCccCCCCCccCeeeccCCcchhhhcCCCCCCCCCccCCCCceeeccccc
Q 036466 649 LPGSLKDLEALENLVIG------ICPKLSSLPEGMHHLTTLKTLAIEECPALCERCKPLTGEDWPKIAHIPQIVFDGEMI 722 (727)
Q Consensus 649 ~~~~l~~l~~L~~L~l~------~~~~~~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (727)
+|..+..+++|+.|+++ +|...+.+|..+..+++|+.|++++|.. . .+..... ..+..+.+.++.+
T Consensus 528 ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~----~ip~~~~---~~L~~L~Ls~N~l 599 (636)
T 4eco_A 528 FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-R----KVNEKIT---PNISVLDIKDNPN 599 (636)
T ss_dssp CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-C----BCCSCCC---TTCCEEECCSCTT
T ss_pred cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-C----ccCHhHh---CcCCEEECcCCCC
Confidence 78788888888888884 4666677888888888888888888875 1 1111111 4667777777655
Q ss_pred c
Q 036466 723 K 723 (727)
Q Consensus 723 ~ 723 (727)
.
T Consensus 600 ~ 600 (636)
T 4eco_A 600 I 600 (636)
T ss_dssp C
T ss_pred c
Confidence 4
No 19
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.88 E-value=1.7e-21 Score=201.69 Aligned_cols=241 Identities=16% Similarity=0.130 Sum_probs=125.6
Q ss_pred cceEEEecCCCccccccccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcccccCceeEecc
Q 036466 431 SLRVLVLTNSAIEVLPRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTT 510 (727)
Q Consensus 431 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 510 (727)
++++++++++.+..+|..+. +++++|++++|.+.+..+..+..+++|++|++++|......|..+..+++|++|++++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 45566666665555554432 4556666666553333333455566666666665554444455566666666666666
Q ss_pred cccccccccCCCCCCCcEEeccccCCchhhhhhccCCCCcCeeecccCcCCC--cCccccccCcccceeecccccccccc
Q 036466 511 KQKSLLESGIGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNACPRLN--LLPPAMKYLSSLERLIFDECESLSLS 588 (727)
Q Consensus 511 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~l~~~ 588 (727)
|.+..+|..+. ++|++|++++|......+..+..+++|+.|++++|.... ..+..+..+++|+.|++++|....
T Consensus 110 n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-- 185 (330)
T 1xku_A 110 NQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-- 185 (330)
T ss_dssp SCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS--
T ss_pred CcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc--
Confidence 66555444332 456666666554333333445556666666666555421 334445555666666665543211
Q ss_pred ccccccccCCCCCCCCCCceeeEEEecCCCCCCCcchhhhcCCCCcccEEEecCCCCccccCccCccccccccccccccc
Q 036466 589 LNMEMKEEGSHHDRKNVGSHLRTLYVARLTPLLELPQWLLQGSSKTLQTLAIGDCPNFMALPGSLKDLEALENLVIGICP 668 (727)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 668 (727)
++... .++|+.|+|++|......+..+ ..+++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus 186 ----------l~~~~--~~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~ 251 (330)
T 1xku_A 186 ----------IPQGL--PPSLTELHLDGNKITKVDAASL--KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK 251 (330)
T ss_dssp ----------CCSSC--CTTCSEEECTTSCCCEECTGGG--TTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC
T ss_pred ----------CCccc--cccCCEEECCCCcCCccCHHHh--cCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc
Confidence 11111 1455566665554333333333 445556666666555444444445555566666666554
Q ss_pred cccccCccCCCCCccCeeeccCCc
Q 036466 669 KLSSLPEGMHHLTTLKTLAIEECP 692 (727)
Q Consensus 669 ~~~~l~~~l~~l~~L~~L~l~~c~ 692 (727)
+. .+|..+..+++|+.|++++|+
T Consensus 252 l~-~lp~~l~~l~~L~~L~l~~N~ 274 (330)
T 1xku_A 252 LV-KVPGGLADHKYIQVVYLHNNN 274 (330)
T ss_dssp CS-SCCTTTTTCSSCCEEECCSSC
T ss_pred Cc-cCChhhccCCCcCEEECCCCc
Confidence 32 455555555666666665554
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.88 E-value=3.7e-22 Score=228.57 Aligned_cols=266 Identities=17% Similarity=0.113 Sum_probs=165.1
Q ss_pred hhhhhc--CCCcceEEEecCCCcc-ccccccCCCCcCcEEeccCCc-ccc-ccCccccCCC-------CCCEeecCCCCC
Q 036466 422 VTSCIS--KSKSLRVLVLTNSAIE-VLPRKMGNLKQLRHLDLSGNR-KIK-KLPNSICELQ-------SLQTLNLGDCLE 489 (727)
Q Consensus 422 ~~~~~~--~~~~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~-~~~-~~~~~~~~l~-------~L~~L~l~~~~~ 489 (727)
+|..++ ++++|++|++++|.+. .+|..+..+++|+.|++++|. +.+ .+|..+..++ +|++|++++|.+
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L 560 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence 555555 8888888888888755 677778888888888888887 555 5676555444 788888887666
Q ss_pred CcccCh--hhcccccCceeEecccccccccccCCCCCCCcEEeccccCCchhhhhhccCCCC-cCeeecccCcCCCcCcc
Q 036466 490 LEELPK--DIRYLVSLRMFVVTTKQKSLLESGIGCLSSLRFLMISNCGNLEYLFEDIDQLSV-LRSLVVNACPRLNLLPP 566 (727)
Q Consensus 490 ~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~-L~~L~l~~~~~~~~~~~ 566 (727)
. .+|. .+.++++|+.|++++|.+..+| .+..+++|+.|++++|... .+|..+..+++ |+.|++++|... .+|.
T Consensus 561 ~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~ 636 (876)
T 4ecn_A 561 E-EFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPN 636 (876)
T ss_dssp C-BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCS
T ss_pred C-ccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCch
Confidence 5 7777 7778888888888888777666 6777777888888776543 66767777777 777777777653 5555
Q ss_pred ccccCc--ccceeecccccc-----------------------------ccccc------------cccccccCCCCCCC
Q 036466 567 AMKYLS--SLERLIFDECES-----------------------------LSLSL------------NMEMKEEGSHHDRK 603 (727)
Q Consensus 567 ~l~~l~--~L~~L~l~~~~~-----------------------------l~~~~------------~~~~~~~~~~~~~~ 603 (727)
.+..++ +|+.|++++|.. ..+.. ....+....++...
T Consensus 637 ~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~ 716 (876)
T 4ecn_A 637 IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENS 716 (876)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTS
T ss_pred hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHH
Confidence 444332 255555554422 10000 00001111222222
Q ss_pred C--------CCceeeEEEecCCCCCCCcchhhhcCCCCcccEEEecCCCCccccCccCccccccccccccc------ccc
Q 036466 604 N--------VGSHLRTLYVARLTPLLELPQWLLQGSSKTLQTLAIGDCPNFMALPGSLKDLEALENLVIGI------CPK 669 (727)
Q Consensus 604 ~--------~~~~L~~L~L~~~~~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~------~~~ 669 (727)
. .+++|+.|+|++|... .+|..+....+++|+.|+|++|.+.+ +|..+..+++|+.|+|++ |..
T Consensus 717 ~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l 794 (876)
T 4ecn_A 717 LKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRI 794 (876)
T ss_dssp SSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBC
T ss_pred hccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccc
Confidence 1 1226666666666433 55554411256666666666665444 566666666666666654 444
Q ss_pred ccccCccCCCCCccCeeeccCCcc
Q 036466 670 LSSLPEGMHHLTTLKTLAIEECPA 693 (727)
Q Consensus 670 ~~~l~~~l~~l~~L~~L~l~~c~~ 693 (727)
.+.+|..+..+++|+.|++++|+.
T Consensus 795 ~~~ip~~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 795 LRQWPTGITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp CCCCCTTGGGCSSCCEEECCSSCC
T ss_pred cccChHHHhcCCCCCEEECCCCCC
Confidence 555666666666777777766654
No 21
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.88 E-value=2.3e-21 Score=218.59 Aligned_cols=251 Identities=20% Similarity=0.150 Sum_probs=212.0
Q ss_pred cceEEEecCCCccccccc-cCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcccccCceeEec
Q 036466 431 SLRVLVLTNSAIEVLPRK-MGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVT 509 (727)
Q Consensus 431 ~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 509 (727)
+|+.|++++|.+..++.. +..+++|++|++++|. ...+|..+..+++|++|++++|......|..+..+++|++|+++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 333 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATH-LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSC-CSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCc-cCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence 899999999999977654 8899999999999998 55889889999999999999988887778899999999999999
Q ss_pred ccccc-cccc-cCCCCCCCcEEeccccCCchhh--hhhccCCCCcCeeecccCcCCCcCccccccCcccceeeccccccc
Q 036466 510 TKQKS-LLES-GIGCLSSLRFLMISNCGNLEYL--FEDIDQLSVLRSLVVNACPRLNLLPPAMKYLSSLERLIFDECESL 585 (727)
Q Consensus 510 ~~~~~-~~~~-~~~~l~~L~~L~l~~~~~~~~l--~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l 585 (727)
+|.+. .++. .+..+++|++|++++|...... +..+..+++|+.|++++|...+..|..+..+++|++|++++|...
T Consensus 334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 413 (606)
T 3t6q_A 334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK 413 (606)
T ss_dssp SCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEE
T ss_pred CCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCC
Confidence 99887 4443 4889999999999998655433 677899999999999999887777888899999999999987543
Q ss_pred cccccccccccCCCCCCCCCCceeeEEEecCCCCCCCcchhhhcCCCCcccEEEecCCCCccc-c--CccCccccccccc
Q 036466 586 SLSLNMEMKEEGSHHDRKNVGSHLRTLYVARLTPLLELPQWLLQGSSKTLQTLAIGDCPNFMA-L--PGSLKDLEALENL 662 (727)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~-~--~~~l~~l~~L~~L 662 (727)
... ....+..+++|+.|++++|......+..+ ..+++|++|++++|.+.+. + +..+..+++|+.|
T Consensus 414 ~~~----------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L 481 (606)
T 3t6q_A 414 VKD----------AQSPFQNLHLLKVLNLSHSLLDISSEQLF--DGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEIL 481 (606)
T ss_dssp CCT----------TCCTTTTCTTCCEEECTTCCCBTTCTTTT--TTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEE
T ss_pred Ccc----------cchhhhCcccCCEEECCCCccCCcCHHHH--hCCCCCCEEECCCCCCCccccccchhhccCCCccEE
Confidence 211 12336678899999999997766666666 6789999999999987653 2 3568899999999
Q ss_pred cccccccccccCccCCCCCccCeeeccCCcch
Q 036466 663 VIGICPKLSSLPEGMHHLTTLKTLAIEECPAL 694 (727)
Q Consensus 663 ~l~~~~~~~~l~~~l~~l~~L~~L~l~~c~~l 694 (727)
++++|...+..|..+..+++|+.|++++|+.-
T Consensus 482 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 513 (606)
T 3t6q_A 482 VLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLT 513 (606)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred ECCCCccCccChhhhccccCCCEEECCCCccC
Confidence 99999888777888999999999999999643
No 22
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.88 E-value=1.9e-21 Score=226.69 Aligned_cols=284 Identities=16% Similarity=0.103 Sum_probs=172.4
Q ss_pred CCeeEEEeccCCCcchhhhhhhhhcCCCcceEEEecCCCc-ccc-ccccCCCCcCcEEeccCCccccccCccccCCCCCC
Q 036466 403 GRVRTILFPIDDERTSQSFVTSCISKSKSLRVLVLTNSAI-EVL-PRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQ 480 (727)
Q Consensus 403 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 480 (727)
..++.+.+.... .....+..|.++++|++|++++|.. ..+ |..+..+++|++|++++|.+.+..|..+.++++|+
T Consensus 24 ~~l~~LdLs~N~---i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 100 (844)
T 3j0a_A 24 NTTERLLLSFNY---IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLF 100 (844)
T ss_dssp TTCCEEEEESCC---CCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCC
T ss_pred CCcCEEECCCCc---CCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccC
Confidence 456666665321 1223455678888888888888843 344 56788888888888888886666678888888888
Q ss_pred EeecCCCCCCcccChh--hcccccCceeEecccccccc--cccCCCCCCCcEEeccccCCchhhhhhccCC--CCcCeee
Q 036466 481 TLNLGDCLELEELPKD--IRYLVSLRMFVVTTKQKSLL--ESGIGCLSSLRFLMISNCGNLEYLFEDIDQL--SVLRSLV 554 (727)
Q Consensus 481 ~L~l~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l--~~L~~L~ 554 (727)
+|++++|...+..|.. +.++++|++|++++|.+... +..++.+++|++|++++|......+..+..+ ++|+.|+
T Consensus 101 ~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~ 180 (844)
T 3j0a_A 101 ELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS 180 (844)
T ss_dssp CEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCE
T ss_pred EeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEE
Confidence 8888887776656554 78888888888888888744 2457888888888888876555455555555 7788888
Q ss_pred cccCcCCCcCccccccCcc------cceeecccccccccccccccc-------------------------ccCCCCCCC
Q 036466 555 VNACPRLNLLPPAMKYLSS------LERLIFDECESLSLSLNMEMK-------------------------EEGSHHDRK 603 (727)
Q Consensus 555 l~~~~~~~~~~~~l~~l~~------L~~L~l~~~~~l~~~~~~~~~-------------------------~~~~~~~~~ 603 (727)
+++|......|..+..+++ |+.|++++|............ ..+.....+
T Consensus 181 L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f 260 (844)
T 3j0a_A 181 LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTF 260 (844)
T ss_dssp ECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTT
T ss_pred CCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhh
Confidence 8887776666655555544 888888876321000000000 000000011
Q ss_pred CC--CceeeEEEecCCCCCCCcchhhhcCCCCcccEEEecCCCCccccCccCccccccccccccccccccccCccCCCCC
Q 036466 604 NV--GSHLRTLYVARLTPLLELPQWLLQGSSKTLQTLAIGDCPNFMALPGSLKDLEALENLVIGICPKLSSLPEGMHHLT 681 (727)
Q Consensus 604 ~~--~~~L~~L~L~~~~~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~ 681 (727)
.+ +++|+.|+|++|......+..+ ..+++|+.|+|++|.+.+..+..+..+++|++|++++|.+....|..+..++
T Consensus 261 ~~l~~~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 338 (844)
T 3j0a_A 261 AGLARSSVRHLDLSHGFVFSLNSRVF--ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLP 338 (844)
T ss_dssp TTTTTSCCCEEECTTCCCCEECSCCS--SSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCT
T ss_pred hccccCCccEEECCCCcccccChhhh--hcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCC
Confidence 11 2456666665554433333333 3455555555555554444444555555555555555554443344455555
Q ss_pred ccCeeeccCC
Q 036466 682 TLKTLAIEEC 691 (727)
Q Consensus 682 ~L~~L~l~~c 691 (727)
+|+.|++++|
T Consensus 339 ~L~~L~L~~N 348 (844)
T 3j0a_A 339 KVAYIDLQKN 348 (844)
T ss_dssp TCCEEECCSC
T ss_pred CCCEEECCCC
Confidence 5555555555
No 23
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.87 E-value=2.9e-21 Score=201.54 Aligned_cols=264 Identities=19% Similarity=0.223 Sum_probs=172.2
Q ss_pred hcCCCcceEEEecCCCccccccccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcccccCce
Q 036466 426 ISKSKSLRVLVLTNSAIEVLPRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRM 505 (727)
Q Consensus 426 ~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 505 (727)
+..+++|++|++++|.+..++ .+..+++|++|++++|. +..++. +..+++|++|++++|.....++ .+..+++|++
T Consensus 84 ~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~ 159 (347)
T 4fmz_A 84 LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDN-ISDISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNY 159 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSC-CCCCGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCE
T ss_pred hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCc-ccCchh-hccCCceeEEECCCCCCccccc-chhhCCCCcE
Confidence 566666777777666666554 36666667777776666 333333 5666667777776665554443 3666677777
Q ss_pred eEecccccccccccCCCCCCCcEEeccccCCchhhhhhccCCCCcCeeecccCcCCCcCccccccCcccceeeccccccc
Q 036466 506 FVVTTKQKSLLESGIGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNACPRLNLLPPAMKYLSSLERLIFDECESL 585 (727)
Q Consensus 506 L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l 585 (727)
|++++|.+...+. +..+++|++|++++|.. ..++. +..+++|+.|++++|..... +. +..+++|++|++++|...
T Consensus 160 L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l-~~~~~-~~~l~~L~~L~l~~n~l~~~-~~-~~~~~~L~~L~l~~n~l~ 234 (347)
T 4fmz_A 160 LTVTESKVKDVTP-IANLTDLYSLSLNYNQI-EDISP-LASLTSLHYFTAYVNQITDI-TP-VANMTRLNSLKIGNNKIT 234 (347)
T ss_dssp EECCSSCCCCCGG-GGGCTTCSEEECTTSCC-CCCGG-GGGCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCC
T ss_pred EEecCCCcCCchh-hccCCCCCEEEccCCcc-ccccc-ccCCCccceeecccCCCCCC-ch-hhcCCcCCEEEccCCccC
Confidence 7777766664443 56667777777776543 23332 56667777777776655332 22 566777777777776332
Q ss_pred cccccccccccCCCCCCCCCCceeeEEEecCCCCCCCcchhhhcCCCCcccEEEecCCCCccccCccCcccccccccccc
Q 036466 586 SLSLNMEMKEEGSHHDRKNVGSHLRTLYVARLTPLLELPQWLLQGSSKTLQTLAIGDCPNFMALPGSLKDLEALENLVIG 665 (727)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~ 665 (727)
. ++. +..+++|+.|++++|... .++ .+ ..+++|++|++++|.+.+ ++ .+..+++|+.|+++
T Consensus 235 ~------------~~~-~~~l~~L~~L~l~~n~l~-~~~-~~--~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~L~ 295 (347)
T 4fmz_A 235 D------------LSP-LANLSQLTWLEIGTNQIS-DIN-AV--KDLTKLKMLNVGSNQISD-IS-VLNNLSQLNSLFLN 295 (347)
T ss_dssp C------------CGG-GTTCTTCCEEECCSSCCC-CCG-GG--TTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEEECC
T ss_pred C------------Ccc-hhcCCCCCEEECCCCccC-CCh-hH--hcCCCcCEEEccCCccCC-Ch-hhcCCCCCCEEECc
Confidence 2 112 567789999999988543 343 23 578899999999986544 43 47888999999999
Q ss_pred ccccccccCccCCCCCccCeeeccCCcchhhhcCCCCCCCCCccCCCCceeeccccccc
Q 036466 666 ICPKLSSLPEGMHHLTTLKTLAIEECPALCERCKPLTGEDWPKIAHIPQIVFDGEMIKS 724 (727)
Q Consensus 666 ~~~~~~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (727)
+|......+..+..+++|+.|++++|+.- .. . ....+.++..+.+.++.|++
T Consensus 296 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~----~--~~~~l~~L~~L~l~~N~i~~ 347 (347)
T 4fmz_A 296 NNQLGNEDMEVIGGLTNLTTLFLSQNHIT-DI----R--PLASLSKMDSADFANQVIKK 347 (347)
T ss_dssp SSCCCGGGHHHHHTCTTCSEEECCSSSCC-CC----G--GGGGCTTCSEESSSCC----
T ss_pred CCcCCCcChhHhhccccCCEEEccCCccc-cc----c--ChhhhhccceeehhhhcccC
Confidence 99877777777888999999999998732 11 1 13456778888888887763
No 24
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.87 E-value=4.6e-21 Score=207.37 Aligned_cols=245 Identities=18% Similarity=0.128 Sum_probs=176.4
Q ss_pred ceEEEecCCCccccccccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcccccCceeEeccc
Q 036466 432 LRVLVLTNSAIEVLPRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTK 511 (727)
Q Consensus 432 L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 511 (727)
...++.++..+..+|..+. +++++|++++|.+.+..|..+..+++|++|++++|.+....+..+..+++|+.|++++|
T Consensus 56 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp SCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 4567777777777776554 57788888877755555666777788888888777666666677777788888888888
Q ss_pred cccccccc-CCCCCCCcEEeccccCCchhhhhhccCCCCcCeeecccCcCCCcCcc-ccccCcccceeeccccccccccc
Q 036466 512 QKSLLESG-IGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNACPRLNLLPP-AMKYLSSLERLIFDECESLSLSL 589 (727)
Q Consensus 512 ~~~~~~~~-~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~l~~~~ 589 (727)
.+..++.. +..+++|++|++++|......+..+..+++|+.|++++|..++.++. .+..+++|+.|++++|....
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~--- 210 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD--- 210 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS---
T ss_pred cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc---
Confidence 77755543 66777888888877654333334677778888888887666665554 46677788888887763221
Q ss_pred cccccccCCCCCCCCCCceeeEEEecCCCCCCCcchhhhcCCCCcccEEEecCCCCccccCccCcccccccccccccccc
Q 036466 590 NMEMKEEGSHHDRKNVGSHLRTLYVARLTPLLELPQWLLQGSSKTLQTLAIGDCPNFMALPGSLKDLEALENLVIGICPK 669 (727)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 669 (727)
+ ..+..+++|+.|+|++|......+..+ ..+++|+.|+|++|.+.+..+..+..+++|+.|+|++|.+
T Consensus 211 ---------~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 278 (452)
T 3zyi_A 211 ---------M-PNLTPLVGLEELEMSGNHFPEIRPGSF--HGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL 278 (452)
T ss_dssp ---------C-CCCTTCTTCCEEECTTSCCSEECGGGG--TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred ---------c-ccccccccccEEECcCCcCcccCcccc--cCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcC
Confidence 1 234566788888888886665556666 6788899999998887777777788889999999998876
Q ss_pred ccccCccCCCCCccCeeeccCCcc
Q 036466 670 LSSLPEGMHHLTTLKTLAIEECPA 693 (727)
Q Consensus 670 ~~~l~~~l~~l~~L~~L~l~~c~~ 693 (727)
..-.+..+..+++|+.|++++||.
T Consensus 279 ~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 279 SSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp SCCCTTSSTTCTTCCEEECCSSCE
T ss_pred CccChHHhccccCCCEEEccCCCc
Confidence 544445567888999999988875
No 25
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.87 E-value=3.9e-21 Score=199.08 Aligned_cols=244 Identities=17% Similarity=0.136 Sum_probs=158.0
Q ss_pred CcceEEEecCCCccccc-cccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcccccCceeEe
Q 036466 430 KSLRVLVLTNSAIEVLP-RKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVV 508 (727)
Q Consensus 430 ~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 508 (727)
++|++|++++|.+..++ ..+..+++|++|++++|.+.+..|..+..+++|++|++++|... .+|..+. ++|++|++
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l 130 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRI 130 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEEC
Confidence 56777777777777553 35777777777777777655455666777777777777765433 4554443 67777777
Q ss_pred cccccccccc-cCCCCCCCcEEeccccCCc--hhhhhhccCCCCcCeeecccCcCCCcCccccccCcccceeeccccccc
Q 036466 509 TTKQKSLLES-GIGCLSSLRFLMISNCGNL--EYLFEDIDQLSVLRSLVVNACPRLNLLPPAMKYLSSLERLIFDECESL 585 (727)
Q Consensus 509 ~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~--~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l 585 (727)
++|.+..++. .+..+++|++|++++|... ...+..+..+ +|+.|++++|... .+|..+. ++|++|++++|...
T Consensus 131 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~i~ 206 (332)
T 2ft3_A 131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT-GIPKDLP--ETLNELHLDHNKIQ 206 (332)
T ss_dssp CSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS-SCCSSSC--SSCSCCBCCSSCCC
T ss_pred CCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC-ccCcccc--CCCCEEECCCCcCC
Confidence 7777775554 3667777777777776542 2334555555 7777777776643 3554432 56777777766332
Q ss_pred cccccccccccCCCCCCCCCCceeeEEEecCCCCCCCcchhhhcCCCCcccEEEecCCCCccccCccCcccccccccccc
Q 036466 586 SLSLNMEMKEEGSHHDRKNVGSHLRTLYVARLTPLLELPQWLLQGSSKTLQTLAIGDCPNFMALPGSLKDLEALENLVIG 665 (727)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~ 665 (727)
. ..+..+..+++|+.|+|++|......+..+ ..+++|++|++++|.+. .+|..+..+++|+.|+++
T Consensus 207 ~-----------~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~ 272 (332)
T 2ft3_A 207 A-----------IELEDLLRYSKLYRLGLGHNQIRMIENGSL--SFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLH 272 (332)
T ss_dssp C-----------CCTTSSTTCTTCSCCBCCSSCCCCCCTTGG--GGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECC
T ss_pred c-----------cCHHHhcCCCCCCEEECCCCcCCcCChhHh--hCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECC
Confidence 1 113455667788888888876554444444 45778888888887544 677778888888888888
Q ss_pred ccccccccCccCCC------CCccCeeeccCCcch
Q 036466 666 ICPKLSSLPEGMHH------LTTLKTLAIEECPAL 694 (727)
Q Consensus 666 ~~~~~~~l~~~l~~------l~~L~~L~l~~c~~l 694 (727)
+|.+..-.+..+.. .++|+.|++.+||..
T Consensus 273 ~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 273 TNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp SSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred CCCCCccChhHccccccccccccccceEeecCccc
Confidence 87654332333322 467888888888743
No 26
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=1.5e-21 Score=218.80 Aligned_cols=259 Identities=12% Similarity=0.025 Sum_probs=153.5
Q ss_pred hhhhhhcCCCcceEEEecCCCcccccc-ccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcc
Q 036466 421 FVTSCISKSKSLRVLVLTNSAIEVLPR-KMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRY 499 (727)
Q Consensus 421 ~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 499 (727)
..+..|..+++|++|++++|.+..++. .+..+++|++|++++|.+.+..|..++.+++|++|++++|.+....+..+.+
T Consensus 66 lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~ 145 (597)
T 3oja_B 66 LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHN 145 (597)
T ss_dssp ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred cCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhcc
Confidence 445567888999999999999887654 7888999999999999866655666788999999999987665444445688
Q ss_pred cccCceeEeccccccccc-ccCCCCCCCcEEeccccCCchhhhhhccCCCCcCeeecccCcCCCcCccccccCcccceee
Q 036466 500 LVSLRMFVVTTKQKSLLE-SGIGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNACPRLNLLPPAMKYLSSLERLI 578 (727)
Q Consensus 500 l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 578 (727)
+++|++|++++|.+..++ ..+..+++|++|++++|.... + .+..+++|+.|++++|.... +..+++|+.|+
T Consensus 146 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~--~~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ 217 (597)
T 3oja_B 146 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-V--DLSLIPSLFHANVSYNLLST-----LAIPIAVEELD 217 (597)
T ss_dssp CTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-C--CGGGCTTCSEEECCSSCCSE-----EECCTTCSEEE
T ss_pred CCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-c--ChhhhhhhhhhhcccCcccc-----ccCCchhheee
Confidence 999999999999888554 468888999999999875432 2 23445566666655543321 11122333333
Q ss_pred cccccccccccc---------ccccccCCCCCCCCCCceeeEEEecCCCCCCCcchhhhcCCCCcccEEEecCCCCcccc
Q 036466 579 FDECESLSLSLN---------MEMKEEGSHHDRKNVGSHLRTLYVARLTPLLELPQWLLQGSSKTLQTLAIGDCPNFMAL 649 (727)
Q Consensus 579 l~~~~~l~~~~~---------~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~ 649 (727)
+++|..-..... ...+.... +..+..+++|+.|+|++|......+..+ ..+++|+.|+|++|.+. .+
T Consensus 218 ls~n~l~~~~~~~~~~L~~L~L~~n~l~~-~~~l~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~-~l 293 (597)
T 3oja_B 218 ASHNSINVVRGPVNVELTILKLQHNNLTD-TAWLLNYPGLVEVDLSYNELEKIMYHPF--VKMQRLERLYISNNRLV-AL 293 (597)
T ss_dssp CCSSCCCEEECSCCSCCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCEEESGGG--TTCSSCCEEECTTSCCC-EE
T ss_pred ccCCcccccccccCCCCCEEECCCCCCCC-ChhhccCCCCCEEECCCCccCCCCHHHh--cCccCCCEEECCCCCCC-CC
Confidence 333321100000 00000000 1223344555556665554444444444 44555555555555432 24
Q ss_pred CccCccccccccccccccccccccCccCCCCCccCeeeccCCc
Q 036466 650 PGSLKDLEALENLVIGICPKLSSLPEGMHHLTTLKTLAIEECP 692 (727)
Q Consensus 650 ~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~c~ 692 (727)
|..+..+++|+.|+|++|.+. .+|..+..+++|+.|++++|+
T Consensus 294 ~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~ 335 (597)
T 3oja_B 294 NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNS 335 (597)
T ss_dssp ECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSC
T ss_pred CcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCC
Confidence 444445555555555555433 444444455555555555554
No 27
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.87 E-value=4.8e-21 Score=223.38 Aligned_cols=255 Identities=15% Similarity=0.081 Sum_probs=205.3
Q ss_pred CCCcceEEEecCCCcccc-ccccCCCCcCcEEeccCCcccccc-CccccCCCCCCEeecCCCCCCcccChhhcccccCce
Q 036466 428 KSKSLRVLVLTNSAIEVL-PRKMGNLKQLRHLDLSGNRKIKKL-PNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRM 505 (727)
Q Consensus 428 ~~~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 505 (727)
..++|++|++++|.+..+ +..+..+++|++|++++|...+.+ |..+.++++|++|++++|.+....|..+.++++|++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence 457999999999999865 678999999999999999767666 678999999999999998888888999999999999
Q ss_pred eEeccccccc-cccc--CCCCCCCcEEeccccCCchhh-hhhccCCCCcCeeecccCcCCCcCccccccC--cccceeec
Q 036466 506 FVVTTKQKSL-LESG--IGCLSSLRFLMISNCGNLEYL-FEDIDQLSVLRSLVVNACPRLNLLPPAMKYL--SSLERLIF 579 (727)
Q Consensus 506 L~l~~~~~~~-~~~~--~~~l~~L~~L~l~~~~~~~~l-~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l--~~L~~L~l 579 (727)
|++++|.+.. .+.. +..+++|++|++++|...... +..++.+++|+.|++++|...+..+..+..+ ++|+.|++
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L 181 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEE
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEEC
Confidence 9999999984 3443 889999999999998665433 3578999999999999998877777777766 78999999
Q ss_pred cccccccccccccccccCCCCCCCCCCc------eeeEEEecCCCCCCCcchhhh-------------------------
Q 036466 580 DECESLSLSLNMEMKEEGSHHDRKNVGS------HLRTLYVARLTPLLELPQWLL------------------------- 628 (727)
Q Consensus 580 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~------~L~~L~L~~~~~~~~l~~~~~------------------------- 628 (727)
++|.... ..+..+..+. .|+.|+|++|......+..+.
T Consensus 182 ~~n~l~~-----------~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~ 250 (844)
T 3j0a_A 182 AANSLYS-----------RVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFH 250 (844)
T ss_dssp CCSBSCC-----------CCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCS
T ss_pred CCCcccc-----------ccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccccc
Confidence 9874432 1122222222 488888888854333322211
Q ss_pred -----------cCCCCcccEEEecCCCCccccCccCccccccccccccccccccccCccCCCCCccCeeeccCCcc
Q 036466 629 -----------QGSSKTLQTLAIGDCPNFMALPGSLKDLEALENLVIGICPKLSSLPEGMHHLTTLKTLAIEECPA 693 (727)
Q Consensus 629 -----------~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~c~~ 693 (727)
....++|+.|+|++|.+.+..+..+..+++|+.|+|++|......|..+..+++|+.|++++|..
T Consensus 251 ~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l 326 (844)
T 3j0a_A 251 NIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL 326 (844)
T ss_dssp SSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCC
T ss_pred ccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCC
Confidence 01237899999999988777788899999999999999988777778899999999999999863
No 28
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.87 E-value=2.8e-21 Score=197.81 Aligned_cols=245 Identities=17% Similarity=0.091 Sum_probs=138.3
Q ss_pred eEEEecCCCccccccccCCCCcCcEEeccCCccccccCc-cccCCCCCCEeecCCCCCCc--ccChhhcccccCceeEec
Q 036466 433 RVLVLTNSAIEVLPRKMGNLKQLRHLDLSGNRKIKKLPN-SICELQSLQTLNLGDCLELE--ELPKDIRYLVSLRMFVVT 509 (727)
Q Consensus 433 ~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~ 509 (727)
+.++++++.+..+|..+. ++|++|++++|.+ ..+|. .+..+++|++|++++|.... ..+..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l-~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKL-QSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCCEEECCSSCC-CCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcccCCCCCC--CCCCEEECCCCcc-CccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 345555555555555432 4566666666553 33443 24556666666666554332 123444455666666666
Q ss_pred ccccccccccCCCCCCCcEEeccccCCchhhh--hhccCCCCcCeeecccCcCCCcCccccccCcccceeeccccccccc
Q 036466 510 TKQKSLLESGIGCLSSLRFLMISNCGNLEYLF--EDIDQLSVLRSLVVNACPRLNLLPPAMKYLSSLERLIFDECESLSL 587 (727)
Q Consensus 510 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~--~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~ 587 (727)
+|.+..++..+..+++|++|++++|.. ..++ ..+..+++|+.|++++|......+..+..+++|++|++++|....
T Consensus 87 ~n~i~~l~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~- 164 (306)
T 2z66_A 87 FNGVITMSSNFLGLEQLEHLDFQHSNL-KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE- 164 (306)
T ss_dssp SCSEEEEEEEEETCTTCCEEECTTSEE-ESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG-
T ss_pred CCccccChhhcCCCCCCCEEECCCCcc-cccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc-
Confidence 666665555555566666666666432 2222 345556666666666665544445555556666666666553211
Q ss_pred cccccccccCCCCCCCCCCceeeEEEecCCCCCCCcchhhhcCCCCcccEEEecCCCCccccCccCcccccccccccccc
Q 036466 588 SLNMEMKEEGSHHDRKNVGSHLRTLYVARLTPLLELPQWLLQGSSKTLQTLAIGDCPNFMALPGSLKDLEALENLVIGIC 667 (727)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~ 667 (727)
..++..+..+++|+.|+|++|......+..+ ..+++|++|+|++|.+.+..+..+..+++|+.|++++|
T Consensus 165 ---------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 233 (306)
T 2z66_A 165 ---------NFLPDIFTELRNLTFLDLSQCQLEQLSPTAF--NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 233 (306)
T ss_dssp ---------GEECSCCTTCTTCCEEECTTSCCCEECTTTT--TTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTS
T ss_pred ---------ccchhHHhhCcCCCEEECCCCCcCCcCHHHh--cCCCCCCEEECCCCccCccChhhccCcccCCEeECCCC
Confidence 0123445555666666666664443334444 45667777777777655444445666777777777777
Q ss_pred ccccccCccCCCCC-ccCeeeccCCcc
Q 036466 668 PKLSSLPEGMHHLT-TLKTLAIEECPA 693 (727)
Q Consensus 668 ~~~~~l~~~l~~l~-~L~~L~l~~c~~ 693 (727)
...+..+..+..++ +|+.|++++|+.
T Consensus 234 ~l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 234 HIMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp CCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred CCcccCHHHHHhhhccCCEEEccCCCe
Confidence 66666666666663 777777777664
No 29
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.86 E-value=5e-21 Score=206.32 Aligned_cols=246 Identities=16% Similarity=0.108 Sum_probs=164.6
Q ss_pred ceEEEecCCCccccccccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcccccCceeEeccc
Q 036466 432 LRVLVLTNSAIEVLPRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTK 511 (727)
Q Consensus 432 L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 511 (727)
...++.++..+..+|..+. .+++.|++++|.+....+..+..+++|++|++++|.+....+..+.++++|+.|++++|
T Consensus 45 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 4566667777776666554 56777777777654444556677777777777776655555566777777777777777
Q ss_pred ccccccc-cCCCCCCCcEEeccccCCchhhhhhccCCCCcCeeecccCcCCCcCcc-ccccCcccceeeccccccccccc
Q 036466 512 QKSLLES-GIGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNACPRLNLLPP-AMKYLSSLERLIFDECESLSLSL 589 (727)
Q Consensus 512 ~~~~~~~-~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~l~~~~ 589 (727)
.++.++. .+..+++|++|++++|......+..+..+++|+.|++++|..++.++. .+..+++|++|++++|..-.
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~--- 199 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE--- 199 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS---
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc---
Confidence 7775554 466777777777777654333334566777777777777665555443 46667777777777763221
Q ss_pred cccccccCCCCCCCCCCceeeEEEecCCCCCCCcchhhhcCCCCcccEEEecCCCCccccCccCcccccccccccccccc
Q 036466 590 NMEMKEEGSHHDRKNVGSHLRTLYVARLTPLLELPQWLLQGSSKTLQTLAIGDCPNFMALPGSLKDLEALENLVIGICPK 669 (727)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 669 (727)
++ .+..+++|+.|+|++|......+..+ ..+++|++|+|++|.+.+..+..+..+++|+.|+|++|.+
T Consensus 200 ---------~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 267 (440)
T 3zyj_A 200 ---------IP-NLTPLIKLDELDLSGNHLSAIRPGSF--QGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267 (440)
T ss_dssp ---------CC-CCTTCSSCCEEECTTSCCCEECTTTT--TTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCC
T ss_pred ---------cc-ccCCCcccCEEECCCCccCccChhhh--ccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCC
Confidence 11 24556678888888775554445555 5678888888888877666677778888888888888865
Q ss_pred ccccCccCCCCCccCeeeccCCcch
Q 036466 670 LSSLPEGMHHLTTLKTLAIEECPAL 694 (727)
Q Consensus 670 ~~~l~~~l~~l~~L~~L~l~~c~~l 694 (727)
..-.+..+..+++|+.|++++||.-
T Consensus 268 ~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 268 TLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CccChhHhccccCCCEEEcCCCCcc
Confidence 5444455677888888888888753
No 30
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.86 E-value=2.7e-21 Score=205.11 Aligned_cols=273 Identities=13% Similarity=0.057 Sum_probs=154.2
Q ss_pred CCeeEEEeccCCCcchhhhhhhhhcCCCcceEEEecCCCcccccc-ccCCCCcCcEEeccCCccccccCccccCCCCCCE
Q 036466 403 GRVRTILFPIDDERTSQSFVTSCISKSKSLRVLVLTNSAIEVLPR-KMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQT 481 (727)
Q Consensus 403 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 481 (727)
..++.+.+... ......+..|..+++|++|++++|.+..++. .+..+++|++|++++|.+.+..|..+..+++|++
T Consensus 45 ~~l~~l~l~~~---~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 45 NNQKIVTFKNS---TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp CCCSEEEEESC---EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCceEEEecCC---chhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 45555555421 1222344457788889999999888887654 6888889999999888865555666788888999
Q ss_pred eecCCCCCCcccCh-hhcccccCceeEeccccccccc-ccCCCCCCCcEEeccccCCchhhhhhccCCCCcCeeecccCc
Q 036466 482 LNLGDCLELEELPK-DIRYLVSLRMFVVTTKQKSLLE-SGIGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNACP 559 (727)
Q Consensus 482 L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~ 559 (727)
|++++|... .+|. .+.++++|++|++++|.+..++ ..+..+++|++|++++|.... + .+..+++|+.|++++|.
T Consensus 122 L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~--~~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 122 LVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-V--DLSLIPSLFHANVSYNL 197 (390)
T ss_dssp EECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-C--CGGGCTTCSEEECCSSC
T ss_pred EECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc-c--ccccccccceeeccccc
Confidence 999887655 4554 4688889999999988888554 457888889999988875432 2 23445555555555543
Q ss_pred CCCcCccccccCcccceeecccccccccccc---------ccccccCCCCCCCCCCceeeEEEecCCCCCCCcchhhhcC
Q 036466 560 RLNLLPPAMKYLSSLERLIFDECESLSLSLN---------MEMKEEGSHHDRKNVGSHLRTLYVARLTPLLELPQWLLQG 630 (727)
Q Consensus 560 ~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~---------~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~ 630 (727)
... +...++|++|++++|........ ...+.... ...+..+++|+.|+|++|......+..+ .
T Consensus 198 l~~-----~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~Ls~n~l~~~~~~~~--~ 269 (390)
T 3o6n_A 198 LST-----LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD-TAWLLNYPGLVEVDLSYNELEKIMYHPF--V 269 (390)
T ss_dssp CSE-----EECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCEEESGGG--T
T ss_pred ccc-----cCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcc-cHHHcCCCCccEEECCCCcCCCcChhHc--c
Confidence 311 11122333333333321100000 00000000 0123344455555555554433334333 4
Q ss_pred CCCcccEEEecCCCCccccCccCccccccccccccccccccccCccCCCCCccCeeeccCCc
Q 036466 631 SSKTLQTLAIGDCPNFMALPGSLKDLEALENLVIGICPKLSSLPEGMHHLTTLKTLAIEECP 692 (727)
Q Consensus 631 ~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~c~ 692 (727)
.+++|++|+|++|.+ +.++..+..+++|+.|++++|.. ..+|..+..+++|+.|++++|+
T Consensus 270 ~l~~L~~L~L~~n~l-~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 270 KMQRLERLYISNNRL-VALNLYGQPIPTLKVLDLSHNHL-LHVERNQPQFDRLENLYLDHNS 329 (390)
T ss_dssp TCSSCCEEECCSSCC-CEEECSSSCCTTCCEEECCSSCC-CCCGGGHHHHTTCSEEECCSSC
T ss_pred ccccCCEEECCCCcC-cccCcccCCCCCCCEEECCCCcc-eecCccccccCcCCEEECCCCc
Confidence 455555555555543 23344444555555555555532 2444444455555555555554
No 31
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.86 E-value=2.1e-21 Score=218.94 Aligned_cols=254 Identities=15% Similarity=0.072 Sum_probs=205.7
Q ss_pred hhcCCCcceEEEecCCCccccccccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcc--cChhhccccc
Q 036466 425 CISKSKSLRVLVLTNSAIEVLPRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEE--LPKDIRYLVS 502 (727)
Q Consensus 425 ~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~l~~l~~ 502 (727)
.+..+++|+.|++++|.+..+| .+ .+++|+.|++++|...+.+ .+..+++|++|++++|..... .|..+..+++
T Consensus 302 ~l~~~~~L~~L~l~~n~l~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~ 377 (606)
T 3vq2_A 302 DVPKHFKWQSLSIIRCQLKQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNS 377 (606)
T ss_dssp CCCTTCCCSEEEEESCCCSSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSC
T ss_pred hccccccCCEEEcccccCcccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCc
Confidence 4666778888888888877777 44 7788888888877545443 456788899999988765544 4778889999
Q ss_pred CceeEecccccccccccCCCCCCCcEEeccccCCchhhh-hhccCCCCcCeeecccCcCCCcCccccccCcccceeeccc
Q 036466 503 LRMFVVTTKQKSLLESGIGCLSSLRFLMISNCGNLEYLF-EDIDQLSVLRSLVVNACPRLNLLPPAMKYLSSLERLIFDE 581 (727)
Q Consensus 503 L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~-~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 581 (727)
|+.|++++|.+..+|..+..+++|++|++++|......+ ..+..+++|+.|++++|...+..|..+..+++|++|++++
T Consensus 378 L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 457 (606)
T 3vq2_A 378 LRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAG 457 (606)
T ss_dssp CCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTT
T ss_pred ccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCC
Confidence 999999999998888888999999999999986655555 5788899999999999988777888888999999999998
Q ss_pred cccccccccccccccCCCCCCCCCCceeeEEEecCCCCCCCcchhhhcCCCCcccEEEecCCCCccccCccCcccccccc
Q 036466 582 CESLSLSLNMEMKEEGSHHDRKNVGSHLRTLYVARLTPLLELPQWLLQGSSKTLQTLAIGDCPNFMALPGSLKDLEALEN 661 (727)
Q Consensus 582 ~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~ 661 (727)
|.... ..++..+..+++|+.|+|++|......+..+ ..+++|++|+|++|.+.+..|..+..+++|+.
T Consensus 458 n~l~~----------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 525 (606)
T 3vq2_A 458 NSFKD----------NTLSNVFANTTNLTFLDLSKCQLEQISWGVF--DTLHRLQLLNMSHNNLLFLDSSHYNQLYSLST 525 (606)
T ss_dssp CEEGG----------GEECSCCTTCTTCCEEECTTSCCCEECTTTT--TTCTTCCEEECCSSCCSCEEGGGTTTCTTCCE
T ss_pred CcCCC----------cchHHhhccCCCCCEEECCCCcCCccChhhh--cccccCCEEECCCCcCCCcCHHHccCCCcCCE
Confidence 74322 0135667788999999999997766666666 67899999999999888877888999999999
Q ss_pred ccccccccccccCccCCCCC-ccCeeeccCCcchh
Q 036466 662 LVIGICPKLSSLPEGMHHLT-TLKTLAIEECPALC 695 (727)
Q Consensus 662 L~l~~~~~~~~l~~~l~~l~-~L~~L~l~~c~~l~ 695 (727)
|++++|.+ ..+|..+..++ +|+.|++++||..+
T Consensus 526 L~l~~N~l-~~~p~~~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 526 LDCSFNRI-ETSKGILQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp EECTTSCC-CCEESCGGGSCTTCCEEECCSCCCCC
T ss_pred EECCCCcC-cccCHhHhhhcccCcEEEccCCCccc
Confidence 99999975 47888788887 69999999998754
No 32
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.86 E-value=6.5e-21 Score=210.59 Aligned_cols=279 Identities=14% Similarity=0.046 Sum_probs=160.2
Q ss_pred CCeeEEEeccCCCcchhhhhhhhhcCCCcceEEEecCCCcccc-ccccCCCCcCcEEeccCCccccccCccccCCCCCCE
Q 036466 403 GRVRTILFPIDDERTSQSFVTSCISKSKSLRVLVLTNSAIEVL-PRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQT 481 (727)
Q Consensus 403 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 481 (727)
..++.+.+.... .....+..|.++++|++|++++|.+..+ |..+..+++|++|++++|.+ ..+|.. .+++|++
T Consensus 21 ~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~lp~~--~l~~L~~ 94 (520)
T 2z7x_B 21 QKTTILNISQNY---ISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL-VKISCH--PTVNLKH 94 (520)
T ss_dssp TTCSEEECCSSC---CCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCC-CEEECC--CCCCCSE
T ss_pred ccccEEECCCCc---ccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCce-eecCcc--ccCCccE
Confidence 455666654321 1223345677788888888888887765 56777888888888888773 466664 6778888
Q ss_pred eecCCCCCCc-ccChhhcccccCceeEecccccccccccCCCCCCC--cEEeccccCC--chhhhhhc------------
Q 036466 482 LNLGDCLELE-ELPKDIRYLVSLRMFVVTTKQKSLLESGIGCLSSL--RFLMISNCGN--LEYLFEDI------------ 544 (727)
Q Consensus 482 L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L--~~L~l~~~~~--~~~l~~~l------------ 544 (727)
|++++|.+.. .+|..++++++|++|++++|.+.. ..+..+++| ++|++++|.. ....|..+
T Consensus 95 L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l 172 (520)
T 2z7x_B 95 LDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVF 172 (520)
T ss_dssp EECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEEC
T ss_pred EeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccccceEEEEe
Confidence 8888776665 466777888888888888777653 223444555 6666655543 11222211
Q ss_pred --------------------------------------------cCC---------------------------CCcCee
Q 036466 545 --------------------------------------------DQL---------------------------SVLRSL 553 (727)
Q Consensus 545 --------------------------------------------~~l---------------------------~~L~~L 553 (727)
..+ ++|+.|
T Consensus 173 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L 252 (520)
T 2z7x_B 173 PTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYF 252 (520)
T ss_dssp CSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEE
T ss_pred ccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEE
Confidence 111 245555
Q ss_pred ecccCcCCCcCcccc-----ccCcccceeeccccccccccc-----------cccc-cccCCCCCC--CCCCceeeEEEe
Q 036466 554 VVNACPRLNLLPPAM-----KYLSSLERLIFDECESLSLSL-----------NMEM-KEEGSHHDR--KNVGSHLRTLYV 614 (727)
Q Consensus 554 ~l~~~~~~~~~~~~l-----~~l~~L~~L~l~~~~~l~~~~-----------~~~~-~~~~~~~~~--~~~~~~L~~L~L 614 (727)
++++|...+.+|..+ ..+++|+.+++++|.. .... .... -....+... ...+++|+.|++
T Consensus 253 ~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L 331 (520)
T 2z7x_B 253 SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDF 331 (520)
T ss_dssp EEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEEC
T ss_pred EeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEe
Confidence 555555444555555 5555555555555432 1000 0000 000001111 145567777777
Q ss_pred cCCCCCCCcchhhhcCCCCcccEEEecCCCCcc--ccCccCccccccccccccccccccccCcc-CCCCCccCeeeccCC
Q 036466 615 ARLTPLLELPQWLLQGSSKTLQTLAIGDCPNFM--ALPGSLKDLEALENLVIGICPKLSSLPEG-MHHLTTLKTLAIEEC 691 (727)
Q Consensus 615 ~~~~~~~~l~~~~~~~~~~~L~~L~L~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~l~~~-l~~l~~L~~L~l~~c 691 (727)
++|......+..+ ..+++|++|++++|.+.+ .+|..+..+++|++|++++|.....+|.. +..+++|+.|++++|
T Consensus 332 s~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N 409 (520)
T 2z7x_B 332 SNNLLTDTVFENC--GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN 409 (520)
T ss_dssp CSSCCCTTTTTTC--CCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSS
T ss_pred ECCccChhhhhhh--ccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCC
Confidence 7776555455544 556677777777666544 34455666677777777776655545543 455666666666666
Q ss_pred c
Q 036466 692 P 692 (727)
Q Consensus 692 ~ 692 (727)
.
T Consensus 410 ~ 410 (520)
T 2z7x_B 410 I 410 (520)
T ss_dssp C
T ss_pred C
Confidence 4
No 33
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.86 E-value=1.6e-21 Score=219.79 Aligned_cols=272 Identities=17% Similarity=0.085 Sum_probs=225.9
Q ss_pred hcCCCcceEEEecCCCccccccccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcccccCce
Q 036466 426 ISKSKSLRVLVLTNSAIEVLPRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRM 505 (727)
Q Consensus 426 ~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 505 (727)
+..+++|+.|+++++.+..+| .+..+++|+.|++++|.+ +.+|. + .+++|++|++++|...... .+..+++|+.
T Consensus 281 ~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp~-~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~ 354 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFPT-L-DLPFLKSLTLTMNKGSISF--KKVALPSLSY 354 (606)
T ss_dssp CGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCCC-C-CCSSCCEEEEESCSSCEEC--CCCCCTTCCE
T ss_pred cccCCCCCEEEecCccchhhh-hccccccCCEEEcccccC-ccccc-C-CCCccceeeccCCcCccch--hhccCCCCCE
Confidence 888999999999999999888 889999999999999996 88884 5 9999999999998666655 5678999999
Q ss_pred eEecccccccc---cccCCCCCCCcEEeccccCCchhhhhhccCCCCcCeeecccCcCCCcCc-cccccCcccceeeccc
Q 036466 506 FVVTTKQKSLL---ESGIGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNACPRLNLLP-PAMKYLSSLERLIFDE 581 (727)
Q Consensus 506 L~l~~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~ 581 (727)
|++++|.++.. +..+..+++|++|++++|. +..++..+..+++|+.|++++|...+..+ ..+..+++|+.|++++
T Consensus 355 L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 433 (606)
T 3vq2_A 355 LDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISY 433 (606)
T ss_dssp EECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTT
T ss_pred EECcCCccCCCcchhhhhccCCcccEeECCCCc-cccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcC
Confidence 99999999854 6677889999999999975 55677889999999999999998876666 5788899999999999
Q ss_pred cccccccccccccccCCCCCCCCCCceeeEEEecCCCCCCC-cchhhhcCCCCcccEEEecCCCCccccCccCccccccc
Q 036466 582 CESLSLSLNMEMKEEGSHHDRKNVGSHLRTLYVARLTPLLE-LPQWLLQGSSKTLQTLAIGDCPNFMALPGSLKDLEALE 660 (727)
Q Consensus 582 ~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~-l~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~ 660 (727)
|.... ..+..+..+++|+.|++++|..... ++..+ ..+++|++|+|++|.+.+..|..+..+++|+
T Consensus 434 n~l~~-----------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 500 (606)
T 3vq2_A 434 TNTKI-----------DFDGIFLGLTSLNTLKMAGNSFKDNTLSNVF--ANTTNLTFLDLSKCQLEQISWGVFDTLHRLQ 500 (606)
T ss_dssp SCCEE-----------CCTTTTTTCTTCCEEECTTCEEGGGEECSCC--TTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCc-----------cchhhhcCCCCCCEEECCCCcCCCcchHHhh--ccCCCCCEEECCCCcCCccChhhhcccccCC
Confidence 85433 2356677889999999999976653 45555 6789999999999988887888899999999
Q ss_pred cccccccccccccCccCCCCCccCeeeccCCcchhhhcCCCCCCCCCcc-CCCCceeecccccc
Q 036466 661 NLVIGICPKLSSLPEGMHHLTTLKTLAIEECPALCERCKPLTGEDWPKI-AHIPQIVFDGEMIK 723 (727)
Q Consensus 661 ~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 723 (727)
+|++++|...+..|..+..+++|+.|++++|+. . ..... ...+ .++..+.+.++.+.
T Consensus 501 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l-~----~~p~~-~~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 501 LLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI-E----TSKGI-LQHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp EEECCSSCCSCEEGGGTTTCTTCCEEECTTSCC-C----CEESC-GGGSCTTCCEEECCSCCCC
T ss_pred EEECCCCcCCCcCHHHccCCCcCCEEECCCCcC-c----ccCHh-HhhhcccCcEEEccCCCcc
Confidence 999999988887788999999999999999973 2 11221 2233 34677777777664
No 34
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.86 E-value=9.4e-21 Score=197.69 Aligned_cols=259 Identities=16% Similarity=0.209 Sum_probs=206.2
Q ss_pred CCCeeEEEeccCCCcchhhhhhhhhcCCCcceEEEecCCCccccccccCCCCcCcEEeccCCccccccCccccCCCCCCE
Q 036466 402 TGRVRTILFPIDDERTSQSFVTSCISKSKSLRVLVLTNSAIEVLPRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQT 481 (727)
Q Consensus 402 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 481 (727)
...++.+.+....-.. + +.+..+++|++|++++|.+..++. +..+++|+.|++++|.....++. +..+++|++
T Consensus 87 l~~L~~L~L~~n~i~~----~-~~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~ 159 (347)
T 4fmz_A 87 LVKLTNLYIGTNKITD----I-SALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNY 159 (347)
T ss_dssp CTTCCEEECCSSCCCC----C-GGGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCE
T ss_pred CCcCCEEEccCCcccC----c-hHHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcE
Confidence 4567777775332211 1 358899999999999999998876 88999999999999976665554 889999999
Q ss_pred eecCCCCCCcccChhhcccccCceeEecccccccccccCCCCCCCcEEeccccCCchhhhhhccCCCCcCeeecccCcCC
Q 036466 482 LNLGDCLELEELPKDIRYLVSLRMFVVTTKQKSLLESGIGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNACPRL 561 (727)
Q Consensus 482 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~ 561 (727)
|++++|......+ +..+++|+.|++++|.+..++. +..+++|+.|++++|.... ++. +..+++|+.|++++|...
T Consensus 160 L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~~~-~~~~~~L~~L~l~~n~l~ 234 (347)
T 4fmz_A 160 LTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITD-ITP-VANMTRLNSLKIGNNKIT 234 (347)
T ss_dssp EECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECCSSCCC
T ss_pred EEecCCCcCCchh--hccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCC-Cch-hhcCCcCCEEEccCCccC
Confidence 9999876554333 8899999999999999987665 7889999999999975443 333 788999999999998764
Q ss_pred CcCccccccCcccceeeccccccccccccccccccCCCCCCCCCCceeeEEEecCCCCCCCcchhhhcCCCCcccEEEec
Q 036466 562 NLLPPAMKYLSSLERLIFDECESLSLSLNMEMKEEGSHHDRKNVGSHLRTLYVARLTPLLELPQWLLQGSSKTLQTLAIG 641 (727)
Q Consensus 562 ~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~~~L~~L~L~ 641 (727)
. ++. +..+++|++|++++|.... ...+..+++|+.|++++|... .++. + ..+++|+.|+++
T Consensus 235 ~-~~~-~~~l~~L~~L~l~~n~l~~-------------~~~~~~l~~L~~L~l~~n~l~-~~~~-~--~~l~~L~~L~L~ 295 (347)
T 4fmz_A 235 D-LSP-LANLSQLTWLEIGTNQISD-------------INAVKDLTKLKMLNVGSNQIS-DISV-L--NNLSQLNSLFLN 295 (347)
T ss_dssp C-CGG-GTTCTTCCEEECCSSCCCC-------------CGGGTTCTTCCEEECCSSCCC-CCGG-G--GGCTTCSEEECC
T ss_pred C-Ccc-hhcCCCCCEEECCCCccCC-------------ChhHhcCCCcCEEEccCCccC-CChh-h--cCCCCCCEEECc
Confidence 4 444 7889999999999984322 123567789999999999544 4442 3 568999999999
Q ss_pred CCCCccccCccCccccccccccccccccccccCccCCCCCccCeeeccCCcc
Q 036466 642 DCPNFMALPGSLKDLEALENLVIGICPKLSSLPEGMHHLTTLKTLAIEECPA 693 (727)
Q Consensus 642 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~c~~ 693 (727)
+|.+.+..+..+..+++|++|++++|+..+..| +..+++|+.|++++|+.
T Consensus 296 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 296 NNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345 (347)
T ss_dssp SSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC--
T ss_pred CCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhcc
Confidence 998877777888999999999999998665444 78899999999999973
No 35
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.85 E-value=6.7e-21 Score=210.46 Aligned_cols=103 Identities=17% Similarity=0.190 Sum_probs=71.7
Q ss_pred CCeeEEEeccCCCcchhhhhhhhhcCCCcceEEEecCCCccccccccCCCCcCcEEeccCCcccc-ccCccccCCCCCCE
Q 036466 403 GRVRTILFPIDDERTSQSFVTSCISKSKSLRVLVLTNSAIEVLPRKMGNLKQLRHLDLSGNRKIK-KLPNSICELQSLQT 481 (727)
Q Consensus 403 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~ 481 (727)
..++.+.+.... .....+..|.++++|++|++++|.+..+|.. .+++|++|++++|.+.+ .+|..+..+++|++
T Consensus 45 ~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~ 119 (520)
T 2z7x_B 45 SKLRILIISHNR---IQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKF 119 (520)
T ss_dssp TTCCEEECCSSC---CCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCE
T ss_pred ccccEEecCCCc---cCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceE
Confidence 566777665322 2234456788899999999999999888876 78999999999998665 46788888899999
Q ss_pred eecCCCCCCcccChhhcccccC--ceeEeccccc
Q 036466 482 LNLGDCLELEELPKDIRYLVSL--RMFVVTTKQK 513 (727)
Q Consensus 482 L~l~~~~~~~~~~~~l~~l~~L--~~L~l~~~~~ 513 (727)
|++++|.... ..+..+++| +.|++++|.+
T Consensus 120 L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 120 LGLSTTHLEK---SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp EEEEESSCCG---GGGGGGTTSCEEEEEEEECTT
T ss_pred EEecCcccch---hhccccccceeeEEEeecccc
Confidence 9888876543 223333444 4444444443
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.85 E-value=1.1e-20 Score=200.47 Aligned_cols=266 Identities=16% Similarity=0.130 Sum_probs=200.0
Q ss_pred CCeeEEEeccCCCcchhhhhhhhhcCCCcceEEEecCCCcccccc-ccCCCCcCcEEeccCCccccccCcc-ccCCCCCC
Q 036466 403 GRVRTILFPIDDERTSQSFVTSCISKSKSLRVLVLTNSAIEVLPR-KMGNLKQLRHLDLSGNRKIKKLPNS-ICELQSLQ 480 (727)
Q Consensus 403 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~ 480 (727)
..++.+.+.... .....+..|..+++|++|++++|.+..++. .+..+++|++|++++|. +..+|.. +..+++|+
T Consensus 69 ~~L~~L~L~~n~---i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~ 144 (390)
T 3o6n_A 69 RQVELLNLNDLQ---IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLT 144 (390)
T ss_dssp CCCSEEECTTSC---CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCC
T ss_pred ccCcEEECCCCc---ccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCc-cCcCCHHHhcCCCCCc
Confidence 567777775322 223344578899999999999999997754 58999999999999998 4466654 58899999
Q ss_pred EeecCCCCCCcccChhhcccccCceeEecccccccccccCCCCCCCcEEeccccCCc------------------hhhhh
Q 036466 481 TLNLGDCLELEELPKDIRYLVSLRMFVVTTKQKSLLESGIGCLSSLRFLMISNCGNL------------------EYLFE 542 (727)
Q Consensus 481 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~------------------~~l~~ 542 (727)
+|++++|......+..+..+++|+.|++++|.++..+ +..+++|+.|++++|... ..++.
T Consensus 145 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~ 222 (390)
T 3o6n_A 145 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRG 222 (390)
T ss_dssp EEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEEC
T ss_pred EEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeecccccccccCCCCcceEEECCCCeeeeccc
Confidence 9999998877777778999999999999999988553 445566666666554321 11221
Q ss_pred hccCCCCcCeeecccCcCCCcCccccccCcccceeeccccccccccccccccccCCCCCCCCCCceeeEEEecCCCCCCC
Q 036466 543 DIDQLSVLRSLVVNACPRLNLLPPAMKYLSSLERLIFDECESLSLSLNMEMKEEGSHHDRKNVGSHLRTLYVARLTPLLE 622 (727)
Q Consensus 543 ~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~ 622 (727)
...++|+.|++++|.... . ..+..+++|++|++++|..... .+..+..+++|+.|+|++|.. ..
T Consensus 223 --~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~Ls~n~l~~~-----------~~~~~~~l~~L~~L~L~~n~l-~~ 286 (390)
T 3o6n_A 223 --PVNVELTILKLQHNNLTD-T-AWLLNYPGLVEVDLSYNELEKI-----------MYHPFVKMQRLERLYISNNRL-VA 286 (390)
T ss_dssp --CCCSSCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCEE-----------ESGGGTTCSSCCEEECCSSCC-CE
T ss_pred --cccccccEEECCCCCCcc-c-HHHcCCCCccEEECCCCcCCCc-----------ChhHccccccCCEEECCCCcC-cc
Confidence 124578888888876643 2 4577788999999988743221 245566788999999999854 44
Q ss_pred cchhhhcCCCCcccEEEecCCCCccccCccCccccccccccccccccccccCccCCCCCccCeeeccCCcchhh
Q 036466 623 LPQWLLQGSSKTLQTLAIGDCPNFMALPGSLKDLEALENLVIGICPKLSSLPEGMHHLTTLKTLAIEECPALCE 696 (727)
Q Consensus 623 l~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~c~~l~~ 696 (727)
++... ..+++|++|+|++|.+ ..+|..+..+++|+.|++++|.+. .++ +..+++|+.|++++||.-+.
T Consensus 287 ~~~~~--~~l~~L~~L~L~~n~l-~~~~~~~~~l~~L~~L~L~~N~i~-~~~--~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 287 LNLYG--QPIPTLKVLDLSHNHL-LHVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp EECSS--SCCTTCCEEECCSSCC-CCCGGGHHHHTTCSEEECCSSCCC-CCC--CCTTCCCSEEECCSSCEEHH
T ss_pred cCccc--CCCCCCCEEECCCCcc-eecCccccccCcCCEEECCCCccc-eeC--chhhccCCEEEcCCCCccch
Confidence 55444 5789999999999965 467777888999999999999854 444 67899999999999987544
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=7.7e-21 Score=212.95 Aligned_cols=266 Identities=16% Similarity=0.116 Sum_probs=201.8
Q ss_pred CCeeEEEeccCCCcchhhhhhhhhcCCCcceEEEecCCCcccccc-ccCCCCcCcEEeccCCccccccCcc-ccCCCCCC
Q 036466 403 GRVRTILFPIDDERTSQSFVTSCISKSKSLRVLVLTNSAIEVLPR-KMGNLKQLRHLDLSGNRKIKKLPNS-ICELQSLQ 480 (727)
Q Consensus 403 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~ 480 (727)
..++.+.+.... .....+..|..+++|++|++++|.+..++. .+..+++|++|++++|.+. .+|+. +..+++|+
T Consensus 75 ~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~ 150 (597)
T 3oja_B 75 RQVELLNLNDLQ---IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLT 150 (597)
T ss_dssp CCCSEEECTTSC---CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCC
T ss_pred CCCcEEECCCCC---CCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC-CCCHHHhccCCCCC
Confidence 567777775322 223445578999999999999999997765 4789999999999999854 55554 68999999
Q ss_pred EeecCCCCCCcccChhhcccccCceeEecccccccccccCCCCCCCcEEeccccCCc------------------hhhhh
Q 036466 481 TLNLGDCLELEELPKDIRYLVSLRMFVVTTKQKSLLESGIGCLSSLRFLMISNCGNL------------------EYLFE 542 (727)
Q Consensus 481 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~------------------~~l~~ 542 (727)
+|++++|.+....|..+..+++|++|++++|.++.++ +..+++|++|++++|... ..++.
T Consensus 151 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~ 228 (597)
T 3oja_B 151 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRG 228 (597)
T ss_dssp EEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEEC
T ss_pred EEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCccccccCCchhheeeccCCccccccc
Confidence 9999998887777888999999999999999988654 455666666666654321 11111
Q ss_pred hccCCCCcCeeecccCcCCCcCccccccCcccceeeccccccccccccccccccCCCCCCCCCCceeeEEEecCCCCCCC
Q 036466 543 DIDQLSVLRSLVVNACPRLNLLPPAMKYLSSLERLIFDECESLSLSLNMEMKEEGSHHDRKNVGSHLRTLYVARLTPLLE 622 (727)
Q Consensus 543 ~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~ 622 (727)
. ..++|+.|++++|...+ +..+..+++|+.|++++|.... ..+..+..+++|+.|+|++|.. ..
T Consensus 229 ~--~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~-----------~~~~~~~~l~~L~~L~Ls~N~l-~~ 292 (597)
T 3oja_B 229 P--VNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEK-----------IMYHPFVKMQRLERLYISNNRL-VA 292 (597)
T ss_dssp S--CCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCE-----------EESGGGTTCSSCCEEECTTSCC-CE
T ss_pred c--cCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCC-----------CCHHHhcCccCCCEEECCCCCC-CC
Confidence 1 12567888888776643 3567788899999998874322 2245667789999999999854 44
Q ss_pred cchhhhcCCCCcccEEEecCCCCccccCccCccccccccccccccccccccCccCCCCCccCeeeccCCcchhh
Q 036466 623 LPQWLLQGSSKTLQTLAIGDCPNFMALPGSLKDLEALENLVIGICPKLSSLPEGMHHLTTLKTLAIEECPALCE 696 (727)
Q Consensus 623 l~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~c~~l~~ 696 (727)
++... ..+++|+.|+|++|.+. .+|..+..+++|+.|+|++|.+. .++ +..+++|+.|++++||.-+.
T Consensus 293 l~~~~--~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~-~~~--~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 293 LNLYG--QPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp EECSS--SCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCC-CCC--CCTTCCCSEEECCSSCEEHH
T ss_pred CCccc--ccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCC-CcC--hhhcCCCCEEEeeCCCCCCh
Confidence 55544 56899999999999755 67877889999999999999865 344 67899999999999987544
No 38
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.85 E-value=2.1e-20 Score=193.41 Aligned_cols=268 Identities=15% Similarity=0.126 Sum_probs=198.0
Q ss_pred CcceEEEecCCCcccccc-ccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcccccCceeEe
Q 036466 430 KSLRVLVLTNSAIEVLPR-KMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVV 508 (727)
Q Consensus 430 ~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 508 (727)
+.+++|++++|.+..++. .+..+++|++|++++|.+.+..|..+..+++|++|++++|... .+|..+. ++|++|++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l 128 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRV 128 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEEC
Confidence 689999999999997765 6889999999999999866666888999999999999987644 5665553 79999999
Q ss_pred cccccccccc-cCCCCCCCcEEeccccCCch--hhhhhccCCCCcCeeecccCcCCCcCccccccCcccceeeccccccc
Q 036466 509 TTKQKSLLES-GIGCLSSLRFLMISNCGNLE--YLFEDIDQLSVLRSLVVNACPRLNLLPPAMKYLSSLERLIFDECESL 585 (727)
Q Consensus 509 ~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~--~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l 585 (727)
++|.+...+. .+..+++|++|++++|.... ..+..+..+++|+.|++++|... .+|..+. ++|++|++++|...
T Consensus 129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~ 205 (330)
T 1xku_A 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKIT 205 (330)
T ss_dssp CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCC
T ss_pred CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCC
Confidence 9999885554 57889999999999986532 45667888999999999988764 4665443 78999999987532
Q ss_pred cccccccccccCCCCCCCCCCceeeEEEecCCCCCCCcchhhhcCCCCcccEEEecCCCCccccCccCcccccccccccc
Q 036466 586 SLSLNMEMKEEGSHHDRKNVGSHLRTLYVARLTPLLELPQWLLQGSSKTLQTLAIGDCPNFMALPGSLKDLEALENLVIG 665 (727)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~ 665 (727)
.. .+..+..+++|+.|+|++|......+..+ ..+++|++|+|++|.+. .+|..+..+++|++|+++
T Consensus 206 ~~-----------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~ 271 (330)
T 1xku_A 206 KV-----------DAASLKGLNNLAKLGLSFNSISAVDNGSL--ANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLH 271 (330)
T ss_dssp EE-----------CTGGGTTCTTCCEEECCSSCCCEECTTTG--GGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECC
T ss_pred cc-----------CHHHhcCCCCCCEEECCCCcCceeChhhc--cCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECC
Confidence 21 13445677899999999986655444444 56889999999998654 788889999999999999
Q ss_pred ccccccccCccCC------CCCccCeeeccCCcchhhhcCCCCCCCCCccCCCCceeeccc
Q 036466 666 ICPKLSSLPEGMH------HLTTLKTLAIEECPALCERCKPLTGEDWPKIAHIPQIVFDGE 720 (727)
Q Consensus 666 ~~~~~~~l~~~l~------~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (727)
+|.+..--+..+. ..++|+.|++.+||.-... .....+.....+..+++.++
T Consensus 272 ~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~---i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 272 NNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE---IQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp SSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGG---SCGGGGTTCCCGGGEEC---
T ss_pred CCcCCccChhhcCCcccccccccccceEeecCcccccc---cCccccccccceeEEEeccc
Confidence 9875543233332 2478899999999853211 11122334455556655443
No 39
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.85 E-value=3.2e-20 Score=206.74 Aligned_cols=126 Identities=20% Similarity=0.195 Sum_probs=83.2
Q ss_pred CCeeEEEeccCCCcchhhhhhhhhcCCCcceEEEecCCCcccc-ccccCCCCcCcEEeccCCccccccCccccCCCCCCE
Q 036466 403 GRVRTILFPIDDERTSQSFVTSCISKSKSLRVLVLTNSAIEVL-PRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQT 481 (727)
Q Consensus 403 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 481 (727)
..++.+.+.... .....+..|.++++|++|++++|.+..+ |..+..+++|++|++++|. +..+|.. .+++|++
T Consensus 52 ~~L~~L~Ls~N~---i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~--~l~~L~~ 125 (562)
T 3a79_B 52 PRTKALSLSQNS---ISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR-LQNISCC--PMASLRH 125 (562)
T ss_dssp TTCCEEECCSSC---CCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSC-CCEECSC--CCTTCSE
T ss_pred CCcCEEECCCCC---ccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCc-CCccCcc--ccccCCE
Confidence 455666654221 1223345677888888888888888765 5567788888888888887 4466665 7788888
Q ss_pred eecCCCCCCc-ccChhhcccccCceeEecccccccccccCCCCCCC--cEEeccccCC
Q 036466 482 LNLGDCLELE-ELPKDIRYLVSLRMFVVTTKQKSLLESGIGCLSSL--RFLMISNCGN 536 (727)
Q Consensus 482 L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L--~~L~l~~~~~ 536 (727)
|++++|.+.. ..|..++++++|++|++++|.+... .+..+++| ++|++++|..
T Consensus 126 L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 126 LDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp EECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSC
T ss_pred EECCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecccc
Confidence 8888776554 3457788888888888888776631 23334444 6666655533
No 40
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.85 E-value=2e-20 Score=209.35 Aligned_cols=173 Identities=14% Similarity=0.101 Sum_probs=111.7
Q ss_pred cCCCCcCeeecccCcCCCc--CccccccCcccceeecccccccccccc-----------cc-ccccCCCC-CCCCCCcee
Q 036466 545 DQLSVLRSLVVNACPRLNL--LPPAMKYLSSLERLIFDECESLSLSLN-----------ME-MKEEGSHH-DRKNVGSHL 609 (727)
Q Consensus 545 ~~l~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~l~~~~~-----------~~-~~~~~~~~-~~~~~~~~L 609 (727)
..+++|+.|++++|..... .+..+..+++|++|++++|........ .. ....+..+ ..+..+++|
T Consensus 344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 423 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423 (570)
T ss_dssp CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTC
T ss_pred ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCC
Confidence 3456677777766654322 144555666777777766643221100 00 00111112 345677889
Q ss_pred eEEEecCCCCCCCcchhhhcCCCCcccEEEecCCCCc-cccCccCccccccccccccccccccccCccCCCCCccCeeec
Q 036466 610 RTLYVARLTPLLELPQWLLQGSSKTLQTLAIGDCPNF-MALPGSLKDLEALENLVIGICPKLSSLPEGMHHLTTLKTLAI 688 (727)
Q Consensus 610 ~~L~L~~~~~~~~l~~~~~~~~~~~L~~L~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l 688 (727)
+.|++++|......+..+ ..+++|++|++++|.+. +.+|..+..+++|+.|++++|...+..|..+..+++|+.|++
T Consensus 424 ~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 501 (570)
T 2z63_A 424 IYLDISHTHTRVAFNGIF--NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501 (570)
T ss_dssp CEEECTTSCCEECCTTTT--TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEEeCcCCcccccchhhh--hcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeC
Confidence 999998887666666555 66888999999988765 467888888999999999998877766778888899999999
Q ss_pred cCCcchhhhcCCCCCCCCCccCCCCceeeccccccc
Q 036466 689 EECPALCERCKPLTGEDWPKIAHIPQIVFDGEMIKS 724 (727)
Q Consensus 689 ~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (727)
++|.. ..........+.++..+.+.++.+..
T Consensus 502 ~~n~l-----~~~~~~~~~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 502 ASNQL-----KSVPDGIFDRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp CSSCC-----SCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCcC-----CCCCHHHhhcccCCcEEEecCCcccC
Confidence 88852 22222233455666777777776653
No 41
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.85 E-value=7.4e-21 Score=198.76 Aligned_cols=253 Identities=18% Similarity=0.177 Sum_probs=196.3
Q ss_pred CcceEEEecCCCcccccc-ccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcccccCceeEe
Q 036466 430 KSLRVLVLTNSAIEVLPR-KMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVV 508 (727)
Q Consensus 430 ~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 508 (727)
++|++|++++|.+..++. .+..+++|++|++++|.+.+..|..+..+++|++|++++|......+..+.++++|++|++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 589999999999998776 6889999999999999866555677889999999999987665444445889999999999
Q ss_pred cccccccccc--cCCCCCCCcEEeccccCCchhh-hhhccCCCCcCeeecccCcCCCcCccccccCcccceeeccccccc
Q 036466 509 TTKQKSLLES--GIGCLSSLRFLMISNCGNLEYL-FEDIDQLSVLRSLVVNACPRLNLLPPAMKYLSSLERLIFDECESL 585 (727)
Q Consensus 509 ~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~l-~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l 585 (727)
++|.+..++. .+..+++|++|++++|..+..+ +..+..+++|+.|++++|...+..|..+..+++|++|++++|...
T Consensus 132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 211 (353)
T 2z80_A 132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI 211 (353)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST
T ss_pred CCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc
Confidence 9999987776 6788999999999998655555 467888999999999999877777888888999999999887532
Q ss_pred cccccccccccCCCCCCCCCCceeeEEEecCCCCCCCcchhh-hcCCCCcccEEEecCCCCcc----ccCccCccccccc
Q 036466 586 SLSLNMEMKEEGSHHDRKNVGSHLRTLYVARLTPLLELPQWL-LQGSSKTLQTLAIGDCPNFM----ALPGSLKDLEALE 660 (727)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~-~~~~~~~L~~L~L~~~~~~~----~~~~~l~~l~~L~ 660 (727)
... ......+++|+.|+|++|......+..+ .....+.++.++++++.+.+ .+|..+..+++|+
T Consensus 212 ~~~-----------~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~ 280 (353)
T 2z80_A 212 LLL-----------EIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLL 280 (353)
T ss_dssp THH-----------HHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCC
T ss_pred cch-----------hhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCC
Confidence 111 0112236789999999986544322221 11245678888888886654 3677788999999
Q ss_pred cccccccccccccCcc-CCCCCccCeeeccCCcch
Q 036466 661 NLVIGICPKLSSLPEG-MHHLTTLKTLAIEECPAL 694 (727)
Q Consensus 661 ~L~l~~~~~~~~l~~~-l~~l~~L~~L~l~~c~~l 694 (727)
.|++++|.+. .+|.. +..+++|+.|++++||..
T Consensus 281 ~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 281 ELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp EEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred EEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCcc
Confidence 9999999755 77766 488999999999999754
No 42
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.84 E-value=1.6e-19 Score=194.52 Aligned_cols=207 Identities=17% Similarity=0.100 Sum_probs=148.0
Q ss_pred CCCeeEEEeccCCCcchhhhhhhhhcCCCcceEEEecCCCccccccccCCCCcCcEEeccCCccccccCccccCCCCCCE
Q 036466 402 TGRVRTILFPIDDERTSQSFVTSCISKSKSLRVLVLTNSAIEVLPRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQT 481 (727)
Q Consensus 402 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 481 (727)
...++.+.+....-.. .+ .+..+++|++|++++|.+..+| +..+++|++|++++|.+.+ ++ +..+++|++
T Consensus 41 l~~L~~L~Ls~n~l~~----~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~ 110 (457)
T 3bz5_A 41 LATLTSLDCHNSSITD----MT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTY 110 (457)
T ss_dssp HTTCCEEECCSSCCCC----CT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCE
T ss_pred cCCCCEEEccCCCccc----Ch-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCce-ee--cCCCCcCCE
Confidence 3567777775332221 22 5788999999999999998875 8889999999999998544 44 788999999
Q ss_pred eecCCCCCCcccChhhcccccCceeEecccccccccccCCCCCCCcEEeccccCCchhhhhhccCCCCcCeeecccCcCC
Q 036466 482 LNLGDCLELEELPKDIRYLVSLRMFVVTTKQKSLLESGIGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNACPRL 561 (727)
Q Consensus 482 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~ 561 (727)
|++++|.... +| +..+++|++|++++|.++.++ ++.+++|++|++++|..+..+ .+..+++|+.|++++|...
T Consensus 111 L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~ 183 (457)
T 3bz5_A 111 LNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKIT 183 (457)
T ss_dssp EECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCC
T ss_pred EECCCCcCCe-ec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccc
Confidence 9999876554 54 788999999999999998764 788899999999998766655 4777888999999888664
Q ss_pred CcCccccccCcccceeeccccccccccccccccccCCCCCCCCCCceeeEEEecCCCCCCCcchhhhcCCCCcccEEEec
Q 036466 562 NLLPPAMKYLSSLERLIFDECESLSLSLNMEMKEEGSHHDRKNVGSHLRTLYVARLTPLLELPQWLLQGSSKTLQTLAIG 641 (727)
Q Consensus 562 ~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~~~L~~L~L~ 641 (727)
+ +| +..+++|+.|++++|..-.. .+..+++|+.|++++|.... +| + ..+++|+.|+++
T Consensus 184 ~-l~--l~~l~~L~~L~l~~N~l~~~--------------~l~~l~~L~~L~Ls~N~l~~-ip--~--~~l~~L~~L~l~ 241 (457)
T 3bz5_A 184 E-LD--VSQNKLLNRLNCDTNNITKL--------------DLNQNIQLTFLDCSSNKLTE-ID--V--TPLTQLTYFDCS 241 (457)
T ss_dssp C-CC--CTTCTTCCEEECCSSCCSCC--------------CCTTCTTCSEEECCSSCCSC-CC--C--TTCTTCSEEECC
T ss_pred e-ec--cccCCCCCEEECcCCcCCee--------------ccccCCCCCEEECcCCcccc-cC--c--cccCCCCEEEee
Confidence 3 54 66778888888887642211 13445566666666654332 33 2 345556666665
Q ss_pred CCCCcc
Q 036466 642 DCPNFM 647 (727)
Q Consensus 642 ~~~~~~ 647 (727)
+|.+.+
T Consensus 242 ~N~l~~ 247 (457)
T 3bz5_A 242 VNPLTE 247 (457)
T ss_dssp SSCCSC
T ss_pred CCcCCC
Confidence 554433
No 43
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.84 E-value=2.3e-20 Score=207.91 Aligned_cols=103 Identities=17% Similarity=0.160 Sum_probs=73.6
Q ss_pred CCeeEEEeccCCCcchhhhhhhhhcCCCcceEEEecCCCccccccccCCCCcCcEEeccCCcccc-ccCccccCCCCCCE
Q 036466 403 GRVRTILFPIDDERTSQSFVTSCISKSKSLRVLVLTNSAIEVLPRKMGNLKQLRHLDLSGNRKIK-KLPNSICELQSLQT 481 (727)
Q Consensus 403 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~ 481 (727)
..++.+.+.... .....+..|..+++|++|++++|.+..+|.. .+++|++|++++|.+.+ .+|..+.++++|++
T Consensus 76 ~~L~~L~Ls~N~---l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~ 150 (562)
T 3a79_B 76 SELRVLRLSHNR---IRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTF 150 (562)
T ss_dssp TTCCEEECCSCC---CCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCE
T ss_pred CCccEEECCCCC---CCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccE
Confidence 567777775322 2234456788899999999999999988876 79999999999998554 34578889999999
Q ss_pred eecCCCCCCcccChhhcccccC--ceeEeccccc
Q 036466 482 LNLGDCLELEELPKDIRYLVSL--RMFVVTTKQK 513 (727)
Q Consensus 482 L~l~~~~~~~~~~~~l~~l~~L--~~L~l~~~~~ 513 (727)
|++++|..... .+..+.+| +.|++++|.+
T Consensus 151 L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 151 LGLSAAKFRQL---DLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp EEEECSBCCTT---TTGGGTTSCEEEEEEEESSC
T ss_pred EecCCCccccC---chhhhhhceeeEEEeecccc
Confidence 99988765432 23333333 6666666554
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.84 E-value=3.3e-20 Score=192.00 Aligned_cols=266 Identities=16% Similarity=0.122 Sum_probs=204.1
Q ss_pred CCeeEEEeccCCCcchhhhhhhhhcCCCcceEEEecCCCcccc-ccccCCCCcCcEEeccCCccccccCccccCCCCCCE
Q 036466 403 GRVRTILFPIDDERTSQSFVTSCISKSKSLRVLVLTNSAIEVL-PRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQT 481 (727)
Q Consensus 403 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 481 (727)
..++.+.+.... .....+..|.++++|++|++++|.+..+ |..+..+++|++|++++|. +..+|..+. ++|++
T Consensus 54 ~~l~~L~l~~n~---i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~--~~L~~ 127 (332)
T 2ft3_A 54 PDTTLLDLQNND---ISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH-LVEIPPNLP--SSLVE 127 (332)
T ss_dssp TTCCEEECCSSC---CCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC-CCSCCSSCC--TTCCE
T ss_pred CCCeEEECCCCc---CCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc-CCccCcccc--ccCCE
Confidence 456666665322 2233455789999999999999999976 6789999999999999998 457776554 89999
Q ss_pred eecCCCCCCcccChhhcccccCceeEecccccc---cccccCCCCCCCcEEeccccCCchhhhhhccCCCCcCeeecccC
Q 036466 482 LNLGDCLELEELPKDIRYLVSLRMFVVTTKQKS---LLESGIGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNAC 558 (727)
Q Consensus 482 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~---~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~ 558 (727)
|++++|......+..+..+++|+.|++++|.+. ..+..+..+ +|++|++++|. +..+|..+. ++|+.|++++|
T Consensus 128 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~~~~--~~L~~L~l~~n 203 (332)
T 2ft3_A 128 LRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIPKDLP--ETLNELHLDHN 203 (332)
T ss_dssp EECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCSSSC--SSCSCCBCCSS
T ss_pred EECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC-CCccCcccc--CCCCEEECCCC
Confidence 999998776555567899999999999999986 345556666 99999999975 444665543 79999999999
Q ss_pred cCCCcCccccccCcccceeeccccccccccccccccccCCCCCCCCCCceeeEEEecCCCCCCCcchhhhcCCCCcccEE
Q 036466 559 PRLNLLPPAMKYLSSLERLIFDECESLSLSLNMEMKEEGSHHDRKNVGSHLRTLYVARLTPLLELPQWLLQGSSKTLQTL 638 (727)
Q Consensus 559 ~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~~~L~~L 638 (727)
......+..+..+++|+.|++++|..... .+..+..+++|+.|+|++|.. ..+|..+ ..+++|+.|
T Consensus 204 ~i~~~~~~~l~~l~~L~~L~L~~N~l~~~-----------~~~~~~~l~~L~~L~L~~N~l-~~lp~~l--~~l~~L~~L 269 (332)
T 2ft3_A 204 KIQAIELEDLLRYSKLYRLGLGHNQIRMI-----------ENGSLSFLPTLRELHLDNNKL-SRVPAGL--PDLKLLQVV 269 (332)
T ss_dssp CCCCCCTTSSTTCTTCSCCBCCSSCCCCC-----------CTTGGGGCTTCCEEECCSSCC-CBCCTTG--GGCTTCCEE
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCcC-----------ChhHhhCCCCCCEEECCCCcC-eecChhh--hcCccCCEE
Confidence 88766667888999999999998743221 123456778999999999954 4777766 678999999
Q ss_pred EecCCCCccccCccCcc------ccccccccccccccc--cccCccCCCCCccCeeeccCCc
Q 036466 639 AIGDCPNFMALPGSLKD------LEALENLVIGICPKL--SSLPEGMHHLTTLKTLAIEECP 692 (727)
Q Consensus 639 ~L~~~~~~~~~~~~l~~------l~~L~~L~l~~~~~~--~~l~~~l~~l~~L~~L~l~~c~ 692 (727)
++++|.+.+..+..+.. .++|+.|++.+|+.. +..|..+..+++|+.+++++|.
T Consensus 270 ~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 270 YLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp ECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 99999766544444433 478999999999876 3455678889999999999885
No 45
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.84 E-value=7e-20 Score=209.31 Aligned_cols=259 Identities=14% Similarity=0.045 Sum_probs=155.7
Q ss_pred CCeeEEEeccCCCcchhhhhhhhhcCCCcceEEEecCCCcccc-ccccCCCCcCcEEeccCCccccccCc-cccCCCCCC
Q 036466 403 GRVRTILFPIDDERTSQSFVTSCISKSKSLRVLVLTNSAIEVL-PRKMGNLKQLRHLDLSGNRKIKKLPN-SICELQSLQ 480 (727)
Q Consensus 403 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~ 480 (727)
..++.+.+.... .....+..|.++++|++|++++|.+..+ |..+..+++|++|++++|.+ ..+|+ .+.++++|+
T Consensus 25 ~~l~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~~~l~~L~ 100 (680)
T 1ziw_A 25 TNITVLNLTHNQ---LRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL-SQLSDKTFAFCTNLT 100 (680)
T ss_dssp TTCSEEECCSSC---CCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCC-CCCCTTTTTTCTTCS
T ss_pred CCCcEEECCCCC---CCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCcc-CccChhhhccCCCCC
Confidence 456666664322 1123345577888888888888887755 44577788888888888874 44554 577888888
Q ss_pred EeecCCCCCCcccChhhcccccCceeEeccccccc-ccccCCCCCCCcEEeccccCCchhhhhhcc--CCCCcCeeeccc
Q 036466 481 TLNLGDCLELEELPKDIRYLVSLRMFVVTTKQKSL-LESGIGCLSSLRFLMISNCGNLEYLFEDID--QLSVLRSLVVNA 557 (727)
Q Consensus 481 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~--~l~~L~~L~l~~ 557 (727)
+|++++|......|..+.++++|++|++++|.+.. .+..+..+++|++|++++|......+..+. .+++|+.|++++
T Consensus 101 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~ 180 (680)
T 1ziw_A 101 ELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180 (680)
T ss_dssp EEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTT
T ss_pred EEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCC
Confidence 88888876655555678888888888888887774 344567788888888888754433333333 457788888888
Q ss_pred CcCCCcCccccccCcccceeeccccccc----------------cccccccccccCCCCCCCCCCc--eeeEEEecCCCC
Q 036466 558 CPRLNLLPPAMKYLSSLERLIFDECESL----------------SLSLNMEMKEEGSHHDRKNVGS--HLRTLYVARLTP 619 (727)
Q Consensus 558 ~~~~~~~~~~l~~l~~L~~L~l~~~~~l----------------~~~~~~~~~~~~~~~~~~~~~~--~L~~L~L~~~~~ 619 (727)
|...+..|..+..+++|+.|.+.++... +..........+..+..+..+. +|+.|+|++|..
T Consensus 181 n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l 260 (680)
T 1ziw_A 181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL 260 (680)
T ss_dssp CCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCC
T ss_pred CcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCc
Confidence 7765555555665555555555443210 0000000000111122233333 366777766654
Q ss_pred CCCcchhhhcCCCCcccEEEecCCCCccccCccCcccccccccccccc
Q 036466 620 LLELPQWLLQGSSKTLQTLAIGDCPNFMALPGSLKDLEALENLVIGIC 667 (727)
Q Consensus 620 ~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~ 667 (727)
....+..+ ..+++|++|++++|.+.+..|..+..+++|+.|++++|
T Consensus 261 ~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~ 306 (680)
T 1ziw_A 261 NVVGNDSF--AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS 306 (680)
T ss_dssp CEECTTTT--TTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTC
T ss_pred CccCcccc--cCcccccEeeCCCCccCccChhhhcCCCCccEEeccch
Confidence 43333333 45666666666666655555555555555555555544
No 46
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.84 E-value=5.2e-20 Score=186.13 Aligned_cols=249 Identities=19% Similarity=0.185 Sum_probs=140.6
Q ss_pred CCcceEEEecCCCcccccc-ccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCccc-ChhhcccccCcee
Q 036466 429 SKSLRVLVLTNSAIEVLPR-KMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEEL-PKDIRYLVSLRMF 506 (727)
Q Consensus 429 ~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L 506 (727)
.++|+.|++++|.+..++. .+..+++|++|++++|.+.+..|..+..+++|++|++++|..+..+ |..+..+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 3567777777777765553 4666777777777776644444556666777777777766533333 5566667777777
Q ss_pred Eecccccccc-cccCCCCCCCcEEeccccCCchhhhhhccCCCCcCeeecccCcCCCcCccccccCcccceeeccccccc
Q 036466 507 VVTTKQKSLL-ESGIGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNACPRLNLLPPAMKYLSSLERLIFDECESL 585 (727)
Q Consensus 507 ~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l 585 (727)
++++|.+... +..+..+++|++|++++|......+..+..+++|+.|++++|......+..+..+++|++|++++|...
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 190 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccc
Confidence 7777766644 344566677777777765443333334666677777777766554333334566666777776665322
Q ss_pred cccccccccccCCCCCCCCCCceeeEEEecCCCCCCCcchhhhcCCCCcccEEEecCCCCccccCccCcccccccccccc
Q 036466 586 SLSLNMEMKEEGSHHDRKNVGSHLRTLYVARLTPLLELPQWLLQGSSKTLQTLAIGDCPNFMALPGSLKDLEALENLVIG 665 (727)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~ 665 (727)
.. .+..+..+++|+.|+|++|......+..+ ..+++|+.|++++|++....+. ...+..|+.+...
T Consensus 191 ~~-----------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~N~~~c~~~~-~~~~~~l~~~~~~ 256 (285)
T 1ozn_A 191 HV-----------HPHAFRDLGRLMTLYLFANNLSALPTEAL--APLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGS 256 (285)
T ss_dssp EE-----------CTTTTTTCTTCCEEECCSSCCSCCCHHHH--TTCTTCCEEECCSSCEECSGGG-HHHHHHHHHCCSE
T ss_pred cc-----------CHhHccCcccccEeeCCCCcCCcCCHHHc--ccCcccCEEeccCCCccCCCCc-HHHHHHHHhcccc
Confidence 11 13444555666666666664443333333 4566666666666654332211 0112234444455
Q ss_pred ccccccccCccCCC--CCccCeeeccCC
Q 036466 666 ICPKLSSLPEGMHH--LTTLKTLAIEEC 691 (727)
Q Consensus 666 ~~~~~~~l~~~l~~--l~~L~~L~l~~c 691 (727)
.+......|..+.+ +..++..++.+|
T Consensus 257 ~~~~~c~~p~~l~g~~l~~l~~~~l~~C 284 (285)
T 1ozn_A 257 SSEVPCSLPQRLAGRDLKRLAANDLQGC 284 (285)
T ss_dssp ECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred cCccccCCchHhCCcChhhcCHHHhccC
Confidence 55444455544432 345555555555
No 47
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.83 E-value=1.7e-20 Score=208.90 Aligned_cols=178 Identities=20% Similarity=0.203 Sum_probs=112.9
Q ss_pred CCeeEEEeccCCCcchhhhhhhhhcCCCcceEEEecCCCccccc-cccCCCCcCcEEeccCCccccccCccccCCCCCCE
Q 036466 403 GRVRTILFPIDDERTSQSFVTSCISKSKSLRVLVLTNSAIEVLP-RKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQT 481 (727)
Q Consensus 403 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 481 (727)
..++.+.+.... .....+..|.++++|++|++++|.+..++ ..+..+++|++|++++|.+.+..|..+..+++|++
T Consensus 26 ~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 102 (549)
T 2z81_A 26 AAMKSLDLSFNK---ITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKY 102 (549)
T ss_dssp TTCCEEECCSSC---CCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCE
T ss_pred CCccEEECcCCc---cCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcE
Confidence 455666554221 11223445667777777777777776554 45677777777777777654444444777777777
Q ss_pred eecCCCCCCc-ccChhhcccccCceeEecccc-ccccc-ccCCCCCCCcEEeccccCCchhhhhhccCCCCcCeeecccC
Q 036466 482 LNLGDCLELE-ELPKDIRYLVSLRMFVVTTKQ-KSLLE-SGIGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNAC 558 (727)
Q Consensus 482 L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~-~~~~~-~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~ 558 (727)
|++++|.... ..|..+.++++|++|++++|. +..++ ..+..+++|++|++++|......|..+..+++|+.|++++|
T Consensus 103 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 182 (549)
T 2z81_A 103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS 182 (549)
T ss_dssp EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred EECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccC
Confidence 7777765544 345566777777777777776 34443 45677777777777776655556667777777777777766
Q ss_pred cCCCcCccc-cccCcccceeecccccc
Q 036466 559 PRLNLLPPA-MKYLSSLERLIFDECES 584 (727)
Q Consensus 559 ~~~~~~~~~-l~~l~~L~~L~l~~~~~ 584 (727)
... .+|.. +..+++|+.|++++|..
T Consensus 183 ~~~-~~~~~~~~~l~~L~~L~L~~n~l 208 (549)
T 2z81_A 183 ESA-FLLEIFADILSSVRYLELRDTNL 208 (549)
T ss_dssp BST-THHHHHHHSTTTBSEEEEESCBC
T ss_pred ccc-ccchhhHhhcccccEEEccCCcc
Confidence 542 33333 24577888888887753
No 48
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.83 E-value=5.8e-20 Score=209.98 Aligned_cols=261 Identities=18% Similarity=0.128 Sum_probs=199.5
Q ss_pred CcceEEEecCCCcccccc-ccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcccccCceeEe
Q 036466 430 KSLRVLVLTNSAIEVLPR-KMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVV 508 (727)
Q Consensus 430 ~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 508 (727)
+++++|++++|.+..++. .+..+++|++|++++|.+.+..|..+.++++|++|++++|......+..+.++++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 689999999999997765 5899999999999999877777888899999999999997655444446999999999999
Q ss_pred ccccccccc-ccCCCCCCCcEEeccccCCchhhhhhccCCCCcCeeecccCcCCCcCccccc--cCcccceeeccccccc
Q 036466 509 TTKQKSLLE-SGIGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNACPRLNLLPPAMK--YLSSLERLIFDECESL 585 (727)
Q Consensus 509 ~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~--~l~~L~~L~l~~~~~l 585 (727)
++|.+..++ ..+..+++|++|++++|......+..+..+++|+.|++++|...+..+..+. .+++|++|++++|...
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence 999998665 5689999999999999876666677788999999999999887655554443 4689999999988432
Q ss_pred cccccccccccCCCCCC-----------------CCCCceeeEEEecCCCCCCCcchhhhcCCCCcccEEEecCCCCccc
Q 036466 586 SLSLNMEMKEEGSHHDR-----------------KNVGSHLRTLYVARLTPLLELPQWLLQGSSKTLQTLAIGDCPNFMA 648 (727)
Q Consensus 586 ~~~~~~~~~~~~~~~~~-----------------~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~ 648 (727)
... .........+... ....++|+.|++++|......+..+.....++|++|+|++|.+.+.
T Consensus 185 ~~~-~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~ 263 (680)
T 1ziw_A 185 EFS-PGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 263 (680)
T ss_dssp CBC-TTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEE
T ss_pred ccC-hhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCcc
Confidence 211 1000000000000 0022578888888886665555555222235599999999987777
Q ss_pred cCccCccccccccccccccccccccCccCCCCCccCeeeccCC
Q 036466 649 LPGSLKDLEALENLVIGICPKLSSLPEGMHHLTTLKTLAIEEC 691 (727)
Q Consensus 649 ~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~c 691 (727)
.+..+..+++|++|++++|...+..|..+..+++|+.|++++|
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~ 306 (680)
T 1ziw_A 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS 306 (680)
T ss_dssp CTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTC
T ss_pred CcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccch
Confidence 7788999999999999999887777777888888888888765
No 49
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.83 E-value=1.9e-20 Score=208.44 Aligned_cols=286 Identities=19% Similarity=0.192 Sum_probs=181.6
Q ss_pred CCCeeEEEeccCCCcchhhhhhhhhcCCCcceEEEecCCCccccccc-cCCCCcCcEEeccCCcccc-ccCccccCCCCC
Q 036466 402 TGRVRTILFPIDDERTSQSFVTSCISKSKSLRVLVLTNSAIEVLPRK-MGNLKQLRHLDLSGNRKIK-KLPNSICELQSL 479 (727)
Q Consensus 402 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L 479 (727)
...++.+.+.... .....+..|..+++|++|++++|.+..++.. +..+++|++|++++|.+.+ ..|..+.++++|
T Consensus 49 l~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L 125 (549)
T 2z81_A 49 CANLQVLILKSSR---INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNL 125 (549)
T ss_dssp CTTCCEEECTTSC---CCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTC
T ss_pred CCcccEEECCCCC---cCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCc
Confidence 3667777775322 2233456688889999999999988877654 8889999999999888554 456678888999
Q ss_pred CEeecCCCCCCcccC-hhhcccccCceeEecccccc-cccccCCCCCCCcEEeccccCCchhhhhh-ccCCCCcCeeecc
Q 036466 480 QTLNLGDCLELEELP-KDIRYLVSLRMFVVTTKQKS-LLESGIGCLSSLRFLMISNCGNLEYLFED-IDQLSVLRSLVVN 556 (727)
Q Consensus 480 ~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~l~~~-l~~l~~L~~L~l~ 556 (727)
++|++++|...+.+| ..+..+++|++|++++|.+. ..|..+..+++|++|++..|.. ..++.. +..+++|+.|+++
T Consensus 126 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~-~~~~~~~~~~l~~L~~L~L~ 204 (549)
T 2z81_A 126 QTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES-AFLLEIFADILSSVRYLELR 204 (549)
T ss_dssp CEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS-TTHHHHHHHSTTTBSEEEEE
T ss_pred cEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcc-cccchhhHhhcccccEEEcc
Confidence 999998887666665 57888899999999988888 4667788888999999888654 344443 3568889999998
Q ss_pred cCcCCCcC--cc-ccccCcccceeeccc----------------------------cccccccc----------------
Q 036466 557 ACPRLNLL--PP-AMKYLSSLERLIFDE----------------------------CESLSLSL---------------- 589 (727)
Q Consensus 557 ~~~~~~~~--~~-~l~~l~~L~~L~l~~----------------------------~~~l~~~~---------------- 589 (727)
+|...+.. +. ....+++|+.|.+++ |.......
T Consensus 205 ~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~ 284 (549)
T 2z81_A 205 DTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVE 284 (549)
T ss_dssp SCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCC
T ss_pred CCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccc
Confidence 88764421 11 112233444444433 32100000
Q ss_pred -------------------------------cccccccCCCCCCC-CCCceeeEEEecCCCCCCCcchhh-hcCCCCccc
Q 036466 590 -------------------------------NMEMKEEGSHHDRK-NVGSHLRTLYVARLTPLLELPQWL-LQGSSKTLQ 636 (727)
Q Consensus 590 -------------------------------~~~~~~~~~~~~~~-~~~~~L~~L~L~~~~~~~~l~~~~-~~~~~~~L~ 636 (727)
....+....++..+ ..+++|+.|+|++|.....++... ..+.+++|+
T Consensus 285 ~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~ 364 (549)
T 2z81_A 285 TVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQ 364 (549)
T ss_dssp EEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCC
T ss_pred cccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCc
Confidence 00000000011111 235567777777775544433211 114567777
Q ss_pred EEEecCCCCcccc--CccCccccccccccccccccccccCccCCCCCccCeeeccCCc
Q 036466 637 TLAIGDCPNFMAL--PGSLKDLEALENLVIGICPKLSSLPEGMHHLTTLKTLAIEECP 692 (727)
Q Consensus 637 ~L~L~~~~~~~~~--~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~c~ 692 (727)
.|++++|.+.+.. +..+..+++|++|++++|.+. .+|..+..+++|+.|++++|.
T Consensus 365 ~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~ 421 (549)
T 2z81_A 365 TLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTG 421 (549)
T ss_dssp EEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSC
T ss_pred EEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCC
Confidence 7777777554321 134667778888888887543 677777777888888888776
No 50
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.83 E-value=5.4e-20 Score=188.16 Aligned_cols=229 Identities=20% Similarity=0.107 Sum_probs=190.4
Q ss_pred CcceEEEecCCCccccccc-cCCCCcCcEEeccCCcccc--ccCccccCCCCCCEeecCCCCCCcccChhhcccccCcee
Q 036466 430 KSLRVLVLTNSAIEVLPRK-MGNLKQLRHLDLSGNRKIK--KLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMF 506 (727)
Q Consensus 430 ~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 506 (727)
++|++|++++|.+..+|.. +..+++|++|++++|.+.. ..+..+..+++|++|++++|.. ..+|..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i-~~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSE-EEEEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcc-ccChhhcCCCCCCCEE
Confidence 6899999999999988875 6899999999999998542 2356677899999999998754 4577778999999999
Q ss_pred Eecccccccccc--cCCCCCCCcEEeccccCCchhhhhhccCCCCcCeeecccCcCCC-cCccccccCcccceeeccccc
Q 036466 507 VVTTKQKSLLES--GIGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNACPRLN-LLPPAMKYLSSLERLIFDECE 583 (727)
Q Consensus 507 ~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~ 583 (727)
++++|.+...+. .+..+++|++|++++|......+..+..+++|+.|++++|...+ .+|..+..+++|++|++++|.
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 186 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence 999999996653 68899999999999987766677788999999999999998765 578888999999999999984
Q ss_pred cccccccccccccCCCCCCCCCCceeeEEEecCCCCCCCcchhhhcCCCCcccEEEecCCCCccccCccCcccc-ccccc
Q 036466 584 SLSLSLNMEMKEEGSHHDRKNVGSHLRTLYVARLTPLLELPQWLLQGSSKTLQTLAIGDCPNFMALPGSLKDLE-ALENL 662 (727)
Q Consensus 584 ~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~-~L~~L 662 (727)
.... .+..+..+++|+.|+|++|......+..+ ..+++|+.|+|++|.+.+..+..+..++ +|+.|
T Consensus 187 l~~~-----------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L 253 (306)
T 2z66_A 187 LEQL-----------SPTAFNSLSSLQVLNMSHNNFFSLDTFPY--KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL 253 (306)
T ss_dssp CCEE-----------CTTTTTTCTTCCEEECTTSCCSBCCSGGG--TTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEE
T ss_pred cCCc-----------CHHHhcCCCCCCEEECCCCccCccChhhc--cCcccCCEeECCCCCCcccCHHHHHhhhccCCEE
Confidence 3321 24556778899999999997655444444 6789999999999998888888888885 99999
Q ss_pred cccccccccc
Q 036466 663 VIGICPKLSS 672 (727)
Q Consensus 663 ~l~~~~~~~~ 672 (727)
++++|+....
T Consensus 254 ~L~~N~~~~~ 263 (306)
T 2z66_A 254 NLTQNDFACT 263 (306)
T ss_dssp ECTTCCEECS
T ss_pred EccCCCeecc
Confidence 9999987654
No 51
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.83 E-value=7.3e-21 Score=195.35 Aligned_cols=253 Identities=14% Similarity=0.074 Sum_probs=201.3
Q ss_pred hhhhhhhhcCCCcceEEEecCCCccccc-cccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhh
Q 036466 419 QSFVTSCISKSKSLRVLVLTNSAIEVLP-RKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDI 497 (727)
Q Consensus 419 ~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l 497 (727)
.......+..+++|+.|++++|.+..++ ..+..+++|++|++++|.+.+. ++ +..+++|++|++++|... .++
T Consensus 23 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~Ls~n~l~-~l~--- 96 (317)
T 3o53_A 23 KQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYET-LD-LESLSTLRTLDLNNNYVQ-ELL--- 96 (317)
T ss_dssp HHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEE-EE-ETTCTTCCEEECCSSEEE-EEE---
T ss_pred hhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcc-hh-hhhcCCCCEEECcCCccc-ccc---
Confidence 3344556777889999999999999765 5789999999999999985543 33 889999999999987643 333
Q ss_pred cccccCceeEecccccccccccCCCCCCCcEEeccccCCchhhhhhccCCCCcCeeecccCcCCCcCcccc-ccCcccce
Q 036466 498 RYLVSLRMFVVTTKQKSLLESGIGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNACPRLNLLPPAM-KYLSSLER 576 (727)
Q Consensus 498 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~ 576 (727)
..++|+.|++++|.++..+. ..+++|++|++++|......+..+..+++|+.|++++|......+..+ ..+++|++
T Consensus 97 -~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~ 173 (317)
T 3o53_A 97 -VGPSIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173 (317)
T ss_dssp -ECTTCCEEECCSSCCSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCE
T ss_pred -CCCCcCEEECCCCccCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCE
Confidence 34899999999999996653 347889999999987655556678889999999999998766555555 46899999
Q ss_pred eeccccccccccccccccccCCCCCCCCCCceeeEEEecCCCCCCCcchhhhcCCCCcccEEEecCCCCccccCccCccc
Q 036466 577 LIFDECESLSLSLNMEMKEEGSHHDRKNVGSHLRTLYVARLTPLLELPQWLLQGSSKTLQTLAIGDCPNFMALPGSLKDL 656 (727)
Q Consensus 577 L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l 656 (727)
|++++|..... .....+++|+.|+|++|... .++..+ ..+++|+.|+|++|.+. .+|..+..+
T Consensus 174 L~L~~N~l~~~-------------~~~~~l~~L~~L~Ls~N~l~-~l~~~~--~~l~~L~~L~L~~N~l~-~l~~~~~~l 236 (317)
T 3o53_A 174 LNLQYNFIYDV-------------KGQVVFAKLKTLDLSSNKLA-FMGPEF--QSAAGVTWISLRNNKLV-LIEKALRFS 236 (317)
T ss_dssp EECTTSCCCEE-------------ECCCCCTTCCEEECCSSCCC-EECGGG--GGGTTCSEEECTTSCCC-EECTTCCCC
T ss_pred EECCCCcCccc-------------ccccccccCCEEECCCCcCC-cchhhh--cccCcccEEECcCCccc-chhhHhhcC
Confidence 99999854321 11224789999999999654 455445 56899999999999654 678889999
Q ss_pred cccccccccccccc-cccCccCCCCCccCeeeccCCcchhhh
Q 036466 657 EALENLVIGICPKL-SSLPEGMHHLTTLKTLAIEECPALCER 697 (727)
Q Consensus 657 ~~L~~L~l~~~~~~-~~l~~~l~~l~~L~~L~l~~c~~l~~~ 697 (727)
++|+.|++++|+.. ..++.++..+++|+.|++.+|+.++..
T Consensus 237 ~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 237 QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp TTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred CCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCC
Confidence 99999999999988 667788889999999999988877654
No 52
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.82 E-value=2.8e-20 Score=208.15 Aligned_cols=253 Identities=18% Similarity=0.138 Sum_probs=209.5
Q ss_pred hhhhhcCCCcceEEEecCCCccccccccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcccc
Q 036466 422 VTSCISKSKSLRVLVLTNSAIEVLPRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLV 501 (727)
Q Consensus 422 ~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~ 501 (727)
.+..+..+++|+.|++++|.+..+|..+..+ +|+.|++++|.+ ..+|. ..+++|++|++++|......+. ..++
T Consensus 274 ~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~-~~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~ 347 (570)
T 2z63_A 274 IIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKF-GQFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLP 347 (570)
T ss_dssp STTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBC-SSCCB--CBCSSCCEEEEESCBSCCBCCC--CBCT
T ss_pred chhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcc-cccCc--ccccccCEEeCcCCcccccccc--ccCC
Confidence 4556788999999999999999999988888 999999999984 46665 4789999999999877666554 7889
Q ss_pred cCceeEecccccccc---cccCCCCCCCcEEeccccCCchhhhhhccCCCCcCeeecccCcCCCcCc-cccccCccccee
Q 036466 502 SLRMFVVTTKQKSLL---ESGIGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNACPRLNLLP-PAMKYLSSLERL 577 (727)
Q Consensus 502 ~L~~L~l~~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L 577 (727)
+|+.|++++|.+... +..+..+++|++|++++|.. ..++..+..+++|+.|++++|......+ ..+..+++|++|
T Consensus 348 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 426 (570)
T 2z63_A 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426 (570)
T ss_dssp TCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSE-EEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEE
T ss_pred CCCEEeCcCCccCccccccccccccCccCEEECCCCcc-ccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEE
Confidence 999999999998854 56678899999999999754 4455558899999999999988765544 467889999999
Q ss_pred eccccccccccccccccccCCCCCCCCCCceeeEEEecCCCCC-CCcchhhhcCCCCcccEEEecCCCCccccCccCccc
Q 036466 578 IFDECESLSLSLNMEMKEEGSHHDRKNVGSHLRTLYVARLTPL-LELPQWLLQGSSKTLQTLAIGDCPNFMALPGSLKDL 656 (727)
Q Consensus 578 ~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~-~~l~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l 656 (727)
++++|.... ..+..+..+++|+.|+|++|... ..+|..+ ..+++|++|+|++|.+.+..|..+..+
T Consensus 427 ~l~~n~l~~-----------~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~l 493 (570)
T 2z63_A 427 DISHTHTRV-----------AFNGIFNGLSSLEVLKMAGNSFQENFLPDIF--TELRNLTFLDLSQCQLEQLSPTAFNSL 493 (570)
T ss_dssp ECTTSCCEE-----------CCTTTTTTCTTCCEEECTTCEEGGGEECSCC--TTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred eCcCCcccc-----------cchhhhhcCCcCcEEECcCCcCccccchhhh--hcccCCCEEECCCCccccCChhhhhcc
Confidence 999985432 23556778899999999999765 3566555 678999999999998877778889999
Q ss_pred cccccccccccccccccCccCCCCCccCeeeccCCcch
Q 036466 657 EALENLVIGICPKLSSLPEGMHHLTTLKTLAIEECPAL 694 (727)
Q Consensus 657 ~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~c~~l 694 (727)
++|++|++++|...+..+..+..+++|+.|++++||.-
T Consensus 494 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 494 SSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531 (570)
T ss_dssp TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCccc
Confidence 99999999999876666667889999999999998754
No 53
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.82 E-value=2.4e-19 Score=194.66 Aligned_cols=273 Identities=15% Similarity=0.179 Sum_probs=134.2
Q ss_pred hcCCCcceEEEecCCCccccccccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcccccCce
Q 036466 426 ISKSKSLRVLVLTNSAIEVLPRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRM 505 (727)
Q Consensus 426 ~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 505 (727)
+..+++|++|++++|.+..++. +..+++|++|++++|.+. .+++ +..+++|++|++++|.... ++. +.++++|++
T Consensus 64 ~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~-~~~~-~~~l~~L~~L~L~~n~l~~-~~~-~~~l~~L~~ 138 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIA-DITP-LANLTNLTGLTLFNNQITD-IDP-LKNLTNLNR 138 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCC-CGG-GTTCTTCSE
T ss_pred hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccc-cChh-hcCCCCCCEEECCCCCCCC-ChH-HcCCCCCCE
Confidence 5556666666666666666554 666666666666666533 3333 6666666666666654332 232 566666666
Q ss_pred eEecccccccccc--------------------cCCCCCCCcEEeccccCCchhhhhhccCCCCcCeeecccCcCCCcCc
Q 036466 506 FVVTTKQKSLLES--------------------GIGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNACPRLNLLP 565 (727)
Q Consensus 506 L~l~~~~~~~~~~--------------------~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~ 565 (727)
|++++|.+..++. .+..+++|++|++++|.. ..+ ..+..+++|+.|++++|...+..+
T Consensus 139 L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l-~~~-~~l~~l~~L~~L~l~~n~l~~~~~ 216 (466)
T 1o6v_A 139 LELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKV-SDI-SVLAKLTNLESLIATNNQISDITP 216 (466)
T ss_dssp EEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCC-CCC-GGGGGCTTCSEEECCSSCCCCCGG
T ss_pred EECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcC-CCC-hhhccCCCCCEEEecCCccccccc
Confidence 6666666554331 133444455555554432 222 224445555555555554332222
Q ss_pred cccccCcccceeecccccccccccc----------ccccccCCCCCCCCCCceeeEEEecCCCCCCCcchhhhcCCCCcc
Q 036466 566 PAMKYLSSLERLIFDECESLSLSLN----------MEMKEEGSHHDRKNVGSHLRTLYVARLTPLLELPQWLLQGSSKTL 635 (727)
Q Consensus 566 ~~l~~l~~L~~L~l~~~~~l~~~~~----------~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~~~L 635 (727)
+..+++|++|++++|........ ...+....+.. +..+++|+.|++++|.... ++. + ..+++|
T Consensus 217 --~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~~~-~--~~l~~L 289 (466)
T 1o6v_A 217 --LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISN-ISP-L--AGLTAL 289 (466)
T ss_dssp --GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCC-CGG-G--TTCTTC
T ss_pred --ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCc-ccc-c--cCCCcc
Confidence 33445555555554422111000 00000000111 3344555556655553322 222 2 345666
Q ss_pred cEEEecCCCCccccCccCccccccccccccccccccccCccCCCCCccCeeeccCCcchhhhcCCCCCCCCCccCCCCce
Q 036466 636 QTLAIGDCPNFMALPGSLKDLEALENLVIGICPKLSSLPEGMHHLTTLKTLAIEECPALCERCKPLTGEDWPKIAHIPQI 715 (727)
Q Consensus 636 ~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~ 715 (727)
+.|++++|.+.+ ++. +..+++|+.|++++|...+..| +..+++|+.|++++|+.-. . +....+.++..+
T Consensus 290 ~~L~L~~n~l~~-~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-----~--~~l~~l~~L~~L 358 (466)
T 1o6v_A 290 TNLELNENQLED-ISP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD-----V--SSLANLTNINWL 358 (466)
T ss_dssp SEEECCSSCCSC-CGG-GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC-----C--GGGTTCTTCCEE
T ss_pred CeEEcCCCcccC-chh-hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCC-----c--hhhccCCCCCEE
Confidence 666666664433 222 5566666666666665444332 4566777777777664221 1 122334455555
Q ss_pred eecccccc
Q 036466 716 VFDGEMIK 723 (727)
Q Consensus 716 ~~~~~~~~ 723 (727)
.+.++.+.
T Consensus 359 ~l~~n~l~ 366 (466)
T 1o6v_A 359 SAGHNQIS 366 (466)
T ss_dssp ECCSSCCC
T ss_pred eCCCCccC
Confidence 55555554
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.82 E-value=2.5e-20 Score=194.72 Aligned_cols=254 Identities=19% Similarity=0.196 Sum_probs=191.4
Q ss_pred CCeeEEEeccCCCcchhhhhhhhhcCCCcceEEEecCCCccccc-cccCCCCcCcEEeccCCccccccCcc-ccCCCCCC
Q 036466 403 GRVRTILFPIDDERTSQSFVTSCISKSKSLRVLVLTNSAIEVLP-RKMGNLKQLRHLDLSGNRKIKKLPNS-ICELQSLQ 480 (727)
Q Consensus 403 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~ 480 (727)
..++.+.+....- ....+..|.++++|++|++++|.+..++ ..+..+++|++|++++|.+. .+|.. +..+++|+
T Consensus 52 ~~L~~L~l~~n~i---~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~ 127 (353)
T 2z80_A 52 EAVKSLDLSNNRI---TYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLT 127 (353)
T ss_dssp TTCCEEECTTSCC---CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-SCCHHHHTTCTTCS
T ss_pred ccCcEEECCCCcC---cccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC-cCCHhHhCCCccCC
Confidence 5677777753221 2234446889999999999999999764 56999999999999999854 55544 88999999
Q ss_pred EeecCCCCCCcccCh--hhcccccCceeEeccc-ccccc-cccCCCCCCCcEEeccccCCchhhhhhccCCCCcCeeecc
Q 036466 481 TLNLGDCLELEELPK--DIRYLVSLRMFVVTTK-QKSLL-ESGIGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVN 556 (727)
Q Consensus 481 ~L~l~~~~~~~~~~~--~l~~l~~L~~L~l~~~-~~~~~-~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~ 556 (727)
+|++++|... .+|. .+.++++|++|++++| .+..+ +..+..+++|++|++++|......+..+..+++|+.|+++
T Consensus 128 ~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 206 (353)
T 2z80_A 128 FLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILH 206 (353)
T ss_dssp EEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred EEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCC
Confidence 9999997655 5554 7889999999999998 46644 4578899999999999987666668889999999999999
Q ss_pred cCcCCCcCccc-cccCcccceeeccccccccccccccccccCCCCCCCCCCceeeEEEecCCCCCC----CcchhhhcCC
Q 036466 557 ACPRLNLLPPA-MKYLSSLERLIFDECESLSLSLNMEMKEEGSHHDRKNVGSHLRTLYVARLTPLL----ELPQWLLQGS 631 (727)
Q Consensus 557 ~~~~~~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~----~l~~~~~~~~ 631 (727)
+|.. +.+|.. +..+++|+.|++++|........ . ......+..++.++|.++.... .++..+ ..
T Consensus 207 ~n~l-~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-------~-l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l--~~ 275 (353)
T 2z80_A 207 MKQH-ILLLEIFVDVTSSVECLELRDTDLDTFHFS-------E-LSTGETNSLIKKFTFRNVKITDESLFQVMKLL--NQ 275 (353)
T ss_dssp CSCS-TTHHHHHHHHTTTEEEEEEESCBCTTCCCC--------------CCCCCCEEEEESCBCCHHHHHHHHHHH--HT
T ss_pred CCcc-ccchhhhhhhcccccEEECCCCcccccccc-------c-cccccccchhhccccccccccCcchhhhHHHH--hc
Confidence 9876 445543 44688999999999854322100 0 1112335577888888775433 345555 57
Q ss_pred CCcccEEEecCCCCccccCcc-Ccccccccccccccccccccc
Q 036466 632 SKTLQTLAIGDCPNFMALPGS-LKDLEALENLVIGICPKLSSL 673 (727)
Q Consensus 632 ~~~L~~L~L~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~l 673 (727)
+++|++|+|++|.+. .+|.. +..+++|++|++++|+...+.
T Consensus 276 l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 276 ISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp CTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred ccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 899999999999765 66665 589999999999999866543
No 55
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.82 E-value=1.8e-19 Score=194.10 Aligned_cols=226 Identities=20% Similarity=0.204 Sum_probs=186.8
Q ss_pred CcceEEEecCCCccccc-cccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcccccCceeEe
Q 036466 430 KSLRVLVLTNSAIEVLP-RKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVV 508 (727)
Q Consensus 430 ~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 508 (727)
++++.|++++|.+..++ ..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 68999999999999765 57899999999999999866555677899999999999998666555567899999999999
Q ss_pred cccccccccc-cCCCCCCCcEEeccccCCchhhhh-hccCCCCcCeeecccCcCCCcCccccccCcccceeecccccccc
Q 036466 509 TTKQKSLLES-GIGCLSSLRFLMISNCGNLEYLFE-DIDQLSVLRSLVVNACPRLNLLPPAMKYLSSLERLIFDECESLS 586 (727)
Q Consensus 509 ~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~l~~-~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~ 586 (727)
++|.+..++. .+..+++|++|++++|+.+..++. .+..+++|+.|++++|... .+|. +..+++|++|++++|....
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~-~~~l~~L~~L~Ls~N~l~~ 221 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSA 221 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCC-CTTCSSCCEEECTTSCCCE
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccc-cCCCcccCEEECCCCccCc
Confidence 9999996654 688999999999999887777765 6888999999999998764 5664 7788999999999984432
Q ss_pred ccccccccccCCCCCCCCCCceeeEEEecCCCCCCCcchhhhcCCCCcccEEEecCCCCccccCccCccccccccccccc
Q 036466 587 LSLNMEMKEEGSHHDRKNVGSHLRTLYVARLTPLLELPQWLLQGSSKTLQTLAIGDCPNFMALPGSLKDLEALENLVIGI 666 (727)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~ 666 (727)
. .+..+..+++|+.|+|++|......+..+ ..+++|+.|+|++|.+.+..+..+..+++|+.|+|++
T Consensus 222 ~-----------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 288 (440)
T 3zyj_A 222 I-----------RPGSFQGLMHLQKLWMIQSQIQVIERNAF--DNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHH 288 (440)
T ss_dssp E-----------CTTTTTTCTTCCEEECTTCCCCEECTTSS--TTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCS
T ss_pred c-----------ChhhhccCccCCEEECCCCceeEEChhhh--cCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCC
Confidence 2 24567788999999999997655545555 6789999999999987766666778999999999999
Q ss_pred cccc
Q 036466 667 CPKL 670 (727)
Q Consensus 667 ~~~~ 670 (727)
|+..
T Consensus 289 Np~~ 292 (440)
T 3zyj_A 289 NPWN 292 (440)
T ss_dssp SCEE
T ss_pred CCcc
Confidence 9864
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.82 E-value=1.6e-19 Score=195.30 Aligned_cols=226 Identities=21% Similarity=0.177 Sum_probs=186.8
Q ss_pred CcceEEEecCCCcccc-ccccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcccccCceeEe
Q 036466 430 KSLRVLVLTNSAIEVL-PRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVV 508 (727)
Q Consensus 430 ~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 508 (727)
+++++|++++|.+..+ +..|..+++|++|++++|.+.+..+..+..+++|++|++++|......+..+..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 6899999999999876 567899999999999999866666678899999999999998766555566889999999999
Q ss_pred cccccccccc-cCCCCCCCcEEeccccCCchhhhh-hccCCCCcCeeecccCcCCCcCccccccCcccceeecccccccc
Q 036466 509 TTKQKSLLES-GIGCLSSLRFLMISNCGNLEYLFE-DIDQLSVLRSLVVNACPRLNLLPPAMKYLSSLERLIFDECESLS 586 (727)
Q Consensus 509 ~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~l~~-~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~ 586 (727)
++|.+..++. .+..+++|++|++++|+.+..++. .+..+++|+.|++++|... .+| .+..+++|++|++++|....
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~ 232 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPE 232 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SCC-CCTTCTTCCEEECTTSCCSE
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-ccc-cccccccccEEECcCCcCcc
Confidence 9999996654 688999999999999888877765 5888999999999998764 455 47788999999999985433
Q ss_pred ccccccccccCCCCCCCCCCceeeEEEecCCCCCCCcchhhhcCCCCcccEEEecCCCCccccCccCccccccccccccc
Q 036466 587 LSLNMEMKEEGSHHDRKNVGSHLRTLYVARLTPLLELPQWLLQGSSKTLQTLAIGDCPNFMALPGSLKDLEALENLVIGI 666 (727)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~ 666 (727)
. .+..+..+++|+.|+|++|......+..+ ..+++|+.|+|++|.+.+..+..+..+++|+.|+|++
T Consensus 233 ~-----------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 299 (452)
T 3zyi_A 233 I-----------RPGSFHGLSSLKKLWVMNSQVSLIERNAF--DGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHH 299 (452)
T ss_dssp E-----------CGGGGTTCTTCCEEECTTSCCCEECTTTT--TTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCS
T ss_pred c-----------CcccccCccCCCEEEeCCCcCceECHHHh--cCCCCCCEEECCCCcCCccChHHhccccCCCEEEccC
Confidence 2 14456678899999999997665555555 6789999999999977655566678899999999999
Q ss_pred cccc
Q 036466 667 CPKL 670 (727)
Q Consensus 667 ~~~~ 670 (727)
|+..
T Consensus 300 Np~~ 303 (452)
T 3zyi_A 300 NPWN 303 (452)
T ss_dssp SCEE
T ss_pred CCcC
Confidence 9754
No 57
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.82 E-value=5.6e-19 Score=191.83 Aligned_cols=264 Identities=17% Similarity=0.175 Sum_probs=147.2
Q ss_pred hcCCCcceEEEecCCCccccccccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCc--------------
Q 036466 426 ISKSKSLRVLVLTNSAIEVLPRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELE-------------- 491 (727)
Q Consensus 426 ~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-------------- 491 (727)
+..+++|++|++++|.+..++. +..+++|++|++++|.+ ..++. +..+++|++|++++|....
T Consensus 86 ~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l-~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ 162 (466)
T 1o6v_A 86 LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQI-TDIDP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLS 162 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC-CCCGG-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEE
T ss_pred hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCC-CCChH-HcCCCCCCEEECCCCccCCChhhccCCcccEee
Confidence 4455555555555555544443 44555555555555442 22222 4444444444444332211
Q ss_pred ------ccChhhcccccCceeEecccccccccccCCCCCCCcEEeccccCCchhhh--------------------hhcc
Q 036466 492 ------ELPKDIRYLVSLRMFVVTTKQKSLLESGIGCLSSLRFLMISNCGNLEYLF--------------------EDID 545 (727)
Q Consensus 492 ------~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~--------------------~~l~ 545 (727)
.. ..+.++++|+.|++++|.+..++ .+..+++|++|++++|......+ ..+.
T Consensus 163 l~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~ 240 (466)
T 1o6v_A 163 FGNQVTDL-KPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLA 240 (466)
T ss_dssp EEESCCCC-GGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGG
T ss_pred cCCcccCc-hhhccCCCCCEEECcCCcCCCCh-hhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhh
Confidence 01 12445555666666665555433 24555555555555543322111 2233
Q ss_pred CCCCcCeeecccCcCCCcCccccccCcccceeeccccccccccccccccccCCCCCCCCCCceeeEEEecCCCCCCCcch
Q 036466 546 QLSVLRSLVVNACPRLNLLPPAMKYLSSLERLIFDECESLSLSLNMEMKEEGSHHDRKNVGSHLRTLYVARLTPLLELPQ 625 (727)
Q Consensus 546 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~ 625 (727)
.+++|+.|++++|...+. +. +..+++|++|++++|... .++. +..+++|+.|+|++|.... ++.
T Consensus 241 ~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~------------~~~~-~~~l~~L~~L~L~~n~l~~-~~~ 304 (466)
T 1o6v_A 241 SLTNLTDLDLANNQISNL-AP-LSGLTKLTELKLGANQIS------------NISP-LAGLTALTNLELNENQLED-ISP 304 (466)
T ss_dssp GCTTCSEEECCSSCCCCC-GG-GTTCTTCSEEECCSSCCC------------CCGG-GTTCTTCSEEECCSSCCSC-CGG
T ss_pred cCCCCCEEECCCCccccc-hh-hhcCCCCCEEECCCCccC------------cccc-ccCCCccCeEEcCCCcccC-chh
Confidence 444444444444433222 11 344455555555544221 1122 5578899999999996544 433
Q ss_pred hhhcCCCCcccEEEecCCCCccccCccCccccccccccccccccccccCccCCCCCccCeeeccCCcchhhhcCCCCCCC
Q 036466 626 WLLQGSSKTLQTLAIGDCPNFMALPGSLKDLEALENLVIGICPKLSSLPEGMHHLTTLKTLAIEECPALCERCKPLTGED 705 (727)
Q Consensus 626 ~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 705 (727)
+ ..+++|+.|++++|.+.+..| +..+++|+.|++++|...+ + ..+..+++|+.|++++|+.- .. . .
T Consensus 305 -~--~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~-~~----~--~ 370 (466)
T 1o6v_A 305 -I--SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD-V-SSLANLTNINWLSAGHNQIS-DL----T--P 370 (466)
T ss_dssp -G--GGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCC-BC----G--G
T ss_pred -h--cCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCC-c-hhhccCCCCCEEeCCCCccC-cc----c--h
Confidence 3 568999999999998766554 7899999999999997554 4 46789999999999999742 11 1 1
Q ss_pred CCccCCCCceeeccccccc
Q 036466 706 WPKIAHIPQIVFDGEMIKS 724 (727)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~ 724 (727)
...+.++..+.+.++.+..
T Consensus 371 ~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 371 LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp GTTCTTCCEEECCCEEEEC
T ss_pred hhcCCCCCEEeccCCcccC
Confidence 2344556666666665543
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.81 E-value=3.9e-19 Score=179.73 Aligned_cols=224 Identities=17% Similarity=0.086 Sum_probs=145.7
Q ss_pred ceEEEecCCCccccccccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcccccCceeEeccc
Q 036466 432 LRVLVLTNSAIEVLPRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTK 511 (727)
Q Consensus 432 L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 511 (727)
-++++++++.+..+|..+ .++|+.|++++|.+.+..+..+..+++|++|++++|......|..+..+++|++|++++|
T Consensus 13 ~~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 13 KVTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp SCEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred CeEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 368888998888888654 468999999998855544566888999999999988766666778888899999999988
Q ss_pred c-cccc-cccCCCCCCCcEEeccccCCchhhhhhccCCCCcCeeecccCcCCCcCccccccCcccceeeccccccccccc
Q 036466 512 Q-KSLL-ESGIGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNACPRLNLLPPAMKYLSSLERLIFDECESLSLSL 589 (727)
Q Consensus 512 ~-~~~~-~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~ 589 (727)
. +..+ +..+..+++|++|++++|......+..+..+++|+.|++++|......+..+..+++|++|++++|..-...
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~- 169 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP- 169 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC-
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC-
Confidence 6 6654 566788888888888887655545666778888888888887765444445667777777777765321110
Q ss_pred cccccccCCCCCCCCCCceeeEEEecCCCCCCCcchhhhcCCCCcccEEEecCCCCccccCccCcccccccccccccccc
Q 036466 590 NMEMKEEGSHHDRKNVGSHLRTLYVARLTPLLELPQWLLQGSSKTLQTLAIGDCPNFMALPGSLKDLEALENLVIGICPK 669 (727)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 669 (727)
...+..+++|+.|+|++|......+..+ ..+++|+.|++++|.+.+..+..+..+++|+.|++++|+.
T Consensus 170 ----------~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 170 ----------ERAFRGLHSLDRLLLHQNRVAHVHPHAF--RDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp ----------TTTTTTCTTCCEEECCSSCCCEECTTTT--TTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred ----------HHHhcCccccCEEECCCCcccccCHhHc--cCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCc
Confidence 1123344455555555554333333333 3344555555555443332223344455555555555543
Q ss_pred c
Q 036466 670 L 670 (727)
Q Consensus 670 ~ 670 (727)
.
T Consensus 238 ~ 238 (285)
T 1ozn_A 238 V 238 (285)
T ss_dssp E
T ss_pred c
Confidence 3
No 59
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.80 E-value=7.9e-20 Score=198.65 Aligned_cols=238 Identities=15% Similarity=0.079 Sum_probs=190.9
Q ss_pred cCCCcceEEEecCCCccccc-cccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcccccCce
Q 036466 427 SKSKSLRVLVLTNSAIEVLP-RKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRM 505 (727)
Q Consensus 427 ~~~~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 505 (727)
..+++|+.|++++|.+..++ ..+..+++|++|++++|.+.+..| +..+++|++|++++|.+. .+| ..++|+.
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~----~~~~L~~ 103 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELL----VGPSIET 103 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE-EEE----ECTTCCE
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC-CCC----CCCCcCE
Confidence 34559999999999999765 579999999999999998655443 889999999999997544 333 2389999
Q ss_pred eEecccccccccccCCCCCCCcEEeccccCCchhhhhhccCCCCcCeeecccCcCCCcCccccc-cCcccceeecccccc
Q 036466 506 FVVTTKQKSLLESGIGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNACPRLNLLPPAMK-YLSSLERLIFDECES 584 (727)
Q Consensus 506 L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~ 584 (727)
|++++|.++..+. ..+++|++|++++|......+..++.+++|+.|++++|...+..|..+. .+++|+.|++++|..
T Consensus 104 L~L~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 104 LHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp EECCSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred EECcCCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence 9999999996654 3568999999999877666677889999999999999988776676665 789999999999853
Q ss_pred ccccccccccccCCCCCCCCCCceeeEEEecCCCCCCCcchhhhcCCCCcccEEEecCCCCccccCccCccccccccccc
Q 036466 585 LSLSLNMEMKEEGSHHDRKNVGSHLRTLYVARLTPLLELPQWLLQGSSKTLQTLAIGDCPNFMALPGSLKDLEALENLVI 664 (727)
Q Consensus 585 l~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l 664 (727)
... .....+++|+.|+|++|... .++..+ ..+++|+.|+|++|.+. .+|..+..+++|+.|++
T Consensus 182 ~~~-------------~~~~~l~~L~~L~Ls~N~l~-~~~~~~--~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l 244 (487)
T 3oja_A 182 YDV-------------KGQVVFAKLKTLDLSSNKLA-FMGPEF--QSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDL 244 (487)
T ss_dssp CEE-------------ECCCCCTTCCEEECCSSCCC-EECGGG--GGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEEC
T ss_pred ccc-------------cccccCCCCCEEECCCCCCC-CCCHhH--cCCCCccEEEecCCcCc-ccchhhccCCCCCEEEc
Confidence 221 11224789999999998654 454444 56889999999998755 57888889999999999
Q ss_pred cccccc-cccCccCCCCCccCeeeccC
Q 036466 665 GICPKL-SSLPEGMHHLTTLKTLAIEE 690 (727)
Q Consensus 665 ~~~~~~-~~l~~~l~~l~~L~~L~l~~ 690 (727)
++|+.. ..+|.++..+++|+.+++..
T Consensus 245 ~~N~l~c~~~~~~~~~l~~L~~l~~~~ 271 (487)
T 3oja_A 245 RGNGFHCGTLRDFFSKNQRVQTVAKQT 271 (487)
T ss_dssp TTCCBCHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCCCcCcchHHHHHhCCCCcEEeccc
Confidence 999877 56677788888888888863
No 60
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.80 E-value=2.3e-21 Score=198.62 Aligned_cols=247 Identities=16% Similarity=0.156 Sum_probs=120.5
Q ss_pred CCCcceEEEecCCCccccccccCCCCcCcEEeccCCccc-cccCcccc-------CCCCCCEeecCCCCCCcccChhh--
Q 036466 428 KSKSLRVLVLTNSAIEVLPRKMGNLKQLRHLDLSGNRKI-KKLPNSIC-------ELQSLQTLNLGDCLELEELPKDI-- 497 (727)
Q Consensus 428 ~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~-------~l~~L~~L~l~~~~~~~~~~~~l-- 497 (727)
.+++|+.|++++|.+ .+|..+... |+.|++++|.+. ..+|..+. .+++|++|++++|...+.+|..+
T Consensus 41 ~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred cCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 344455555555555 444433322 455555554431 12333332 34555555555554444444443
Q ss_pred cccccCceeEecccccccccccCCCC-----CCCcEEeccccCCchhhhhhccCCCCcCeeecccCcCCCc--Ccccc--
Q 036466 498 RYLVSLRMFVVTTKQKSLLESGIGCL-----SSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNACPRLNL--LPPAM-- 568 (727)
Q Consensus 498 ~~l~~L~~L~l~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~--~~~~l-- 568 (727)
..+++|++|++++|.++..|..+..+ ++|++|++++|......+..+..+++|+.|++++|...+. ++..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 197 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197 (312)
T ss_dssp CCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred hcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence 45555555555555555434333333 4555555555443333334455555555555555543322 12222
Q ss_pred ccCcccceeeccccccccccccccccccCCCC-CCCCCCceeeEEEecCCCCCCCcchhhhcCCCCcccEEEecCCCCcc
Q 036466 569 KYLSSLERLIFDECESLSLSLNMEMKEEGSHH-DRKNVGSHLRTLYVARLTPLLELPQWLLQGSSKTLQTLAIGDCPNFM 647 (727)
Q Consensus 569 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~~~L~~L~L~~~~~~~ 647 (727)
..+++|++|++++|..-... .++ ..+..+++|+.|+|++|......+.... ..+++|++|+|++|.+.
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~---------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~~l~~L~~L~Ls~N~l~- 266 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPS---------GVCSALAAARVQLQGLDLSHNSLRDAAGAPSC-DWPSQLNSLNLSFTGLK- 266 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHH---------HHHHHHHHTTCCCSEEECTTSCCCSSCCCSCC-CCCTTCCEEECTTSCCS-
T ss_pred ccCCCCCEEECCCCcCcchH---------HHHHHHHhcCCCCCEEECCCCcCCcccchhhh-hhcCCCCEEECCCCccC-
Confidence 44455555555554221000 000 1111234566666666644433321111 33567777777777544
Q ss_pred ccCccCccccccccccccccccccccCccCCCCCccCeeeccCCc
Q 036466 648 ALPGSLKDLEALENLVIGICPKLSSLPEGMHHLTTLKTLAIEECP 692 (727)
Q Consensus 648 ~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~c~ 692 (727)
.+|..+. ++|++|++++|.+. .+|. +..+++|+.|++++|+
T Consensus 267 ~ip~~~~--~~L~~L~Ls~N~l~-~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 267 QVPKGLP--AKLSVLDLSYNRLD-RNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp SCCSSCC--SEEEEEECCSSCCC-SCCC-TTTSCEEEEEECTTCT
T ss_pred hhhhhcc--CCceEEECCCCCCC-CChh-HhhCCCCCEEeccCCC
Confidence 5665554 67777777777543 3354 6677777777777776
No 61
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.80 E-value=1.2e-18 Score=187.47 Aligned_cols=211 Identities=17% Similarity=0.116 Sum_probs=173.4
Q ss_pred hhcCCCcceEEEecCCCccccccccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcccccCc
Q 036466 425 CISKSKSLRVLVLTNSAIEVLPRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLR 504 (727)
Q Consensus 425 ~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 504 (727)
.++++++|++|++++|.+..+| .+..+++|++|++++|.+. .+| ++.+++|++|++++|...+ ++ ++++++|+
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~-~~~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~ 109 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNIT-TLD--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLT 109 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCS-CCC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCC
T ss_pred ChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCC-eEc--cccCCCCCEEECcCCCCce-ee--cCCCCcCC
Confidence 4667899999999999999887 6899999999999999854 454 8899999999999977554 44 88999999
Q ss_pred eeEecccccccccccCCCCCCCcEEeccccCCchhhhhhccCCCCcCeeecccCcCCCcCccccccCcccceeecccccc
Q 036466 505 MFVVTTKQKSLLESGIGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNACPRLNLLPPAMKYLSSLERLIFDECES 584 (727)
Q Consensus 505 ~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 584 (727)
+|++++|.++.++ ++.+++|++|++++|.... + .++.+++|+.|++++|...+.+ .+..+++|+.|++++|.-
T Consensus 110 ~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~-l--~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l 182 (457)
T 3bz5_A 110 YLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTE-I--DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKI 182 (457)
T ss_dssp EEECCSSCCSCCC--CTTCTTCCEEECTTSCCSC-C--CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCC
T ss_pred EEECCCCcCCeec--CCCCCcCCEEECCCCccce-e--ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCcc
Confidence 9999999999875 8899999999999976443 4 3788999999999999776666 477889999999998732
Q ss_pred ccccccccccccCCCCCCCCCCceeeEEEecCCCCCCCcchhhhcCCCCcccEEEecCCCCccccCccCccccccccccc
Q 036466 585 LSLSLNMEMKEEGSHHDRKNVGSHLRTLYVARLTPLLELPQWLLQGSSKTLQTLAIGDCPNFMALPGSLKDLEALENLVI 664 (727)
Q Consensus 585 l~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l 664 (727)
- .++ +..+++|+.|++++|.... ++ + ..+++|+.|++++|.+.+ +| +..+++|+.|++
T Consensus 183 ~------------~l~--l~~l~~L~~L~l~~N~l~~-~~--l--~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l 240 (457)
T 3bz5_A 183 T------------ELD--VSQNKLLNRLNCDTNNITK-LD--L--NQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDC 240 (457)
T ss_dssp C------------CCC--CTTCTTCCEEECCSSCCSC-CC--C--TTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEEC
T ss_pred c------------eec--cccCCCCCEEECcCCcCCe-ec--c--ccCCCCCEEECcCCcccc-cC--ccccCCCCEEEe
Confidence 1 122 5677899999999996544 33 3 678999999999997665 66 778888888888
Q ss_pred ccccccc
Q 036466 665 GICPKLS 671 (727)
Q Consensus 665 ~~~~~~~ 671 (727)
++|.+.+
T Consensus 241 ~~N~l~~ 247 (457)
T 3bz5_A 241 SVNPLTE 247 (457)
T ss_dssp CSSCCSC
T ss_pred eCCcCCC
Confidence 8886544
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.78 E-value=3.4e-19 Score=182.87 Aligned_cols=240 Identities=13% Similarity=0.081 Sum_probs=188.0
Q ss_pred CcceEEEecCCCcccccc-ccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcccccCceeEe
Q 036466 430 KSLRVLVLTNSAIEVLPR-KMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVV 508 (727)
Q Consensus 430 ~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 508 (727)
.+++..+++.+.+...+. .+..+++|++|++++|.+.+..|..+..+++|++|++++|...+..+ +..+++|++|++
T Consensus 10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L 87 (317)
T 3o53_A 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL 87 (317)
T ss_dssp TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence 456777777777764433 34567899999999998666666789999999999999987665544 889999999999
Q ss_pred cccccccccccCCCCCCCcEEeccccCCchhhhhhccCCCCcCeeecccCcCCCcCccccccCcccceeecccccccccc
Q 036466 509 TTKQKSLLESGIGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNACPRLNLLPPAMKYLSSLERLIFDECESLSLS 588 (727)
Q Consensus 509 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~ 588 (727)
++|.++.++. +++|++|++++|.... ++. ..+++|+.|++++|......+..+..+++|+.|++++|......
T Consensus 88 s~n~l~~l~~----~~~L~~L~l~~n~l~~-~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 160 (317)
T 3o53_A 88 NNNYVQELLV----GPSIETLHAANNNISR-VSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160 (317)
T ss_dssp CSSEEEEEEE----CTTCCEEECCSSCCSE-EEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred cCCccccccC----CCCcCEEECCCCccCC-cCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc
Confidence 9999986653 3899999999976543 332 24788999999999887666667888999999999998543321
Q ss_pred ccccccccCCCCCC-CCCCceeeEEEecCCCCCCCcchhhhcCCCCcccEEEecCCCCccccCccCcccccccccccccc
Q 036466 589 LNMEMKEEGSHHDR-KNVGSHLRTLYVARLTPLLELPQWLLQGSSKTLQTLAIGDCPNFMALPGSLKDLEALENLVIGIC 667 (727)
Q Consensus 589 ~~~~~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~ 667 (727)
+.. ...+++|+.|+|++|... .++.. ..+++|++|+|++|.+. .+|..+..+++|+.|++++|
T Consensus 161 -----------~~~~~~~l~~L~~L~L~~N~l~-~~~~~---~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N 224 (317)
T 3o53_A 161 -----------FAELAASSDTLEHLNLQYNFIY-DVKGQ---VVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNN 224 (317)
T ss_dssp -----------GGGGGGGTTTCCEEECTTSCCC-EEECC---CCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTS
T ss_pred -----------HHHHhhccCcCCEEECCCCcCc-ccccc---cccccCCEEECCCCcCC-cchhhhcccCcccEEECcCC
Confidence 111 235679999999999643 34432 24899999999999755 56666899999999999999
Q ss_pred ccccccCccCCCCCccCeeeccCCcchh
Q 036466 668 PKLSSLPEGMHHLTTLKTLAIEECPALC 695 (727)
Q Consensus 668 ~~~~~l~~~l~~l~~L~~L~l~~c~~l~ 695 (727)
.+. .+|..+..+++|+.|++++|+..+
T Consensus 225 ~l~-~l~~~~~~l~~L~~L~l~~N~~~~ 251 (317)
T 3o53_A 225 KLV-LIEKALRFSQNLEHFDLRGNGFHC 251 (317)
T ss_dssp CCC-EECTTCCCCTTCCEEECTTCCCBH
T ss_pred ccc-chhhHhhcCCCCCEEEccCCCccC
Confidence 754 788889999999999999998763
No 63
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.78 E-value=3.8e-18 Score=193.59 Aligned_cols=95 Identities=19% Similarity=0.142 Sum_probs=71.4
Q ss_pred CCCCCCCCceeeEEEecCCCCCCCcchhhhcCCCCcccEEEecCCCCccccCccCccccccccccccccccccccCccCC
Q 036466 599 HHDRKNVGSHLRTLYVARLTPLLELPQWLLQGSSKTLQTLAIGDCPNFMALPGSLKDLEALENLVIGICPKLSSLPEGMH 678 (727)
Q Consensus 599 ~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~ 678 (727)
.+..+..+++|+.|+|++|......+..+ ..+++|++|+|++|.+.+..+..+..+++|+.|+|++|.+....|..+.
T Consensus 486 ~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f--~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~ 563 (635)
T 4g8a_A 486 LPDIFTELRNLTFLDLSQCQLEQLSPTAF--NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 563 (635)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECTTTT--TTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTT
T ss_pred CchhhhhccccCEEECCCCccCCcChHHH--cCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHH
Confidence 34556677788888888886555445555 5678888888888876666666778888888888888887777777777
Q ss_pred CC-CccCeeeccCCcchh
Q 036466 679 HL-TTLKTLAIEECPALC 695 (727)
Q Consensus 679 ~l-~~L~~L~l~~c~~l~ 695 (727)
.+ ++|+.|++++||.-|
T Consensus 564 ~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 564 HFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp CCCTTCCEEECTTCCBCC
T ss_pred hhhCcCCEEEeeCCCCcc
Confidence 77 578888888877654
No 64
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.78 E-value=6.4e-18 Score=191.67 Aligned_cols=130 Identities=19% Similarity=0.132 Sum_probs=100.0
Q ss_pred CCeeEEEeccCCCcchhhhhhhhhcCCCcceEEEecCCCcccccc-ccCCCCcCcEEeccCCccccccCccccCCCCCCE
Q 036466 403 GRVRTILFPIDDERTSQSFVTSCISKSKSLRVLVLTNSAIEVLPR-KMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQT 481 (727)
Q Consensus 403 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 481 (727)
..++.+.+.... .....+..|.++++|++|+|++|.+..+++ .|..+++|++|+|++|.+.+..+..|.++++|++
T Consensus 52 ~~~~~LdLs~N~---i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~ 128 (635)
T 4g8a_A 52 FSTKNLDLSFNP---LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 128 (635)
T ss_dssp TTCCEEECTTSC---CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCE
T ss_pred cCCCEEEeeCCC---CCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCE
Confidence 466777765321 223345678899999999999999987765 5888999999999999844333356788999999
Q ss_pred eecCCCCCCcccChhhcccccCceeEecccccc--cccccCCCCCCCcEEeccccC
Q 036466 482 LNLGDCLELEELPKDIRYLVSLRMFVVTTKQKS--LLESGIGCLSSLRFLMISNCG 535 (727)
Q Consensus 482 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~~~~~l~~L~~L~l~~~~ 535 (727)
|++++|......+..++++++|++|++++|.+. ..|..+..+++|++|++++|.
T Consensus 129 L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 129 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 184 (635)
T ss_dssp EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred EECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc
Confidence 999987665544556889999999999999887 345677888999999988874
No 65
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.77 E-value=7.2e-19 Score=191.11 Aligned_cols=221 Identities=14% Similarity=0.087 Sum_probs=177.9
Q ss_pred CCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcccccCceeEecccccccccccCCCCCCCcEE
Q 036466 450 GNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTKQKSLLESGIGCLSSLRFL 529 (727)
Q Consensus 450 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L 529 (727)
..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..| +..+++|++|++++|.++.++.. ++|++|
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L 104 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVG----PSIETL 104 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEEC----TTCCEE
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCC----CCcCEE
Confidence 345699999999999766667789999999999999987766555 88999999999999999876643 899999
Q ss_pred eccccCCchhhhhhccCCCCcCeeecccCcCCCcCccccccCcccceeeccccccccccccccccccCCCCCCC-CCCce
Q 036466 530 MISNCGNLEYLFEDIDQLSVLRSLVVNACPRLNLLPPAMKYLSSLERLIFDECESLSLSLNMEMKEEGSHHDRK-NVGSH 608 (727)
Q Consensus 530 ~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~ 608 (727)
++++|......+ ..+++|+.|++++|...+..|..+..+++|+.|++++|...... +..+ ..+++
T Consensus 105 ~L~~N~l~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-----------~~~l~~~l~~ 170 (487)
T 3oja_A 105 HAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN-----------FAELAASSDT 170 (487)
T ss_dssp ECCSSCCCCEEE---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEE-----------GGGGGGGTTT
T ss_pred ECcCCcCCCCCc---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcC-----------hHHHhhhCCc
Confidence 999986544332 24689999999999987777778889999999999998543221 2222 25789
Q ss_pred eeEEEecCCCCCCCcchhhhcCCCCcccEEEecCCCCccccCccCccccccccccccccccccccCccCCCCCccCeeec
Q 036466 609 LRTLYVARLTPLLELPQWLLQGSSKTLQTLAIGDCPNFMALPGSLKDLEALENLVIGICPKLSSLPEGMHHLTTLKTLAI 688 (727)
Q Consensus 609 L~~L~L~~~~~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l 688 (727)
|+.|+|++|.... ++.. ..+++|+.|+|++|.+.+ +|..+..+++|+.|++++|.+. .+|..+..+++|+.|++
T Consensus 171 L~~L~Ls~N~l~~-~~~~---~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l 244 (487)
T 3oja_A 171 LEHLNLQYNFIYD-VKGQ---VVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDL 244 (487)
T ss_dssp CCEEECTTSCCCE-EECC---CCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEEC
T ss_pred ccEEecCCCcccc-cccc---ccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEc
Confidence 9999999996543 3332 358999999999997654 6556899999999999998755 58888999999999999
Q ss_pred cCCcchhh
Q 036466 689 EECPALCE 696 (727)
Q Consensus 689 ~~c~~l~~ 696 (727)
++|+..+.
T Consensus 245 ~~N~l~c~ 252 (487)
T 3oja_A 245 RGNGFHCG 252 (487)
T ss_dssp TTCCBCHH
T ss_pred CCCCCcCc
Confidence 99987743
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.75 E-value=1.7e-18 Score=177.32 Aligned_cols=222 Identities=16% Similarity=0.145 Sum_probs=171.4
Q ss_pred ceEEEecCCCcc--ccccccC-------CCCcCcEEeccCCccccccCccc--cCCCCCCEeecCCCCCCcccChhhccc
Q 036466 432 LRVLVLTNSAIE--VLPRKMG-------NLKQLRHLDLSGNRKIKKLPNSI--CELQSLQTLNLGDCLELEELPKDIRYL 500 (727)
Q Consensus 432 L~~L~l~~~~~~--~l~~~~~-------~l~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~l~~l 500 (727)
|+.|++++|.+. .+|..+. .+++|++|++++|.+.+.+|..+ ..+++|++|++++|...+. |..+..+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l 143 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAEL 143 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHH
Confidence 888888888885 3454444 68999999999999777888776 8899999999998776665 7777777
Q ss_pred -----ccCceeEeccccccccc-ccCCCCCCCcEEeccccCCchh--hhhhc--cCCCCcCeeecccCcCCC--cCc-cc
Q 036466 501 -----VSLRMFVVTTKQKSLLE-SGIGCLSSLRFLMISNCGNLEY--LFEDI--DQLSVLRSLVVNACPRLN--LLP-PA 567 (727)
Q Consensus 501 -----~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~--l~~~l--~~l~~L~~L~l~~~~~~~--~~~-~~ 567 (727)
++|++|++++|.+...+ ..+..+++|++|++++|...+. ++..+ ..+++|+.|++++|.... .++ ..
T Consensus 144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 223 (312)
T 1wwl_A 144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL 223 (312)
T ss_dssp HTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHH
T ss_pred HHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHH
Confidence 89999999999998665 6788999999999999876554 34455 789999999999987642 222 23
Q ss_pred cccCcccceeeccccccccccccccccccCCCCCCCCCCceeeEEEecCCCCCCCcchhhhcCCCCcccEEEecCCCCcc
Q 036466 568 MKYLSSLERLIFDECESLSLSLNMEMKEEGSHHDRKNVGSHLRTLYVARLTPLLELPQWLLQGSSKTLQTLAIGDCPNFM 647 (727)
Q Consensus 568 l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~~~L~~L~L~~~~~~~ 647 (727)
+..+++|++|++++|...... -...+..+++|+.|+|++|... .+|..+ . ++|++|+|++|.+.+
T Consensus 224 ~~~l~~L~~L~Ls~N~l~~~~----------~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~--~--~~L~~L~Ls~N~l~~ 288 (312)
T 1wwl_A 224 AAARVQLQGLDLSHNSLRDAA----------GAPSCDWPSQLNSLNLSFTGLK-QVPKGL--P--AKLSVLDLSYNRLDR 288 (312)
T ss_dssp HHTTCCCSEEECTTSCCCSSC----------CCSCCCCCTTCCEEECTTSCCS-SCCSSC--C--SEEEEEECCSSCCCS
T ss_pred HhcCCCCCEEECCCCcCCccc----------chhhhhhcCCCCEEECCCCccC-hhhhhc--c--CCceEEECCCCCCCC
Confidence 356789999999987432211 0123445689999999999654 777655 2 899999999997654
Q ss_pred ccCccCcccccccccccccccccc
Q 036466 648 ALPGSLKDLEALENLVIGICPKLS 671 (727)
Q Consensus 648 ~~~~~l~~l~~L~~L~l~~~~~~~ 671 (727)
+|. +..+++|++|++++|++.+
T Consensus 289 -~p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 289 -NPS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp -CCC-TTTSCEEEEEECTTCTTTC
T ss_pred -Chh-HhhCCCCCEEeccCCCCCC
Confidence 466 8999999999999997653
No 67
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.75 E-value=1.7e-17 Score=166.71 Aligned_cols=131 Identities=23% Similarity=0.134 Sum_probs=69.8
Q ss_pred cceEEEecCCCcccccc-ccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcccccCceeEec
Q 036466 431 SLRVLVLTNSAIEVLPR-KMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVT 509 (727)
Q Consensus 431 ~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 509 (727)
+|++|++++|.+..++. .+..+++|++|++++|.+.+..+..+..+++|++|++++|......+..+..+++|+.|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 45666666666655443 45556666666666655333333345555666666666555444444555555666666666
Q ss_pred ccccccccc-cCCCCCCCcEEeccccCCch-hhhhhccCCCCcCeeecccCcCC
Q 036466 510 TKQKSLLES-GIGCLSSLRFLMISNCGNLE-YLFEDIDQLSVLRSLVVNACPRL 561 (727)
Q Consensus 510 ~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~-~l~~~l~~l~~L~~L~l~~~~~~ 561 (727)
+|.+..++. .+..+++|++|++++|.... .+|..+..+++|+.|++++|...
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~ 162 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCC
Confidence 555553332 35555555555555543322 23445555555555555555443
No 68
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.74 E-value=3.7e-17 Score=163.66 Aligned_cols=212 Identities=18% Similarity=0.137 Sum_probs=132.4
Q ss_pred cCCCcceEEEecCCCccccccccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcccccCcee
Q 036466 427 SKSKSLRVLVLTNSAIEVLPRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMF 506 (727)
Q Consensus 427 ~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 506 (727)
..+++|+.|+++++.+..++ .+..+++|++|++++|.+.+ + +.+..+++|++|++++|......+..+..+++|+.|
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred ccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 34567777777777776554 36667777777777776433 3 346677777777777765554444556677777777
Q ss_pred Eeccccccccccc-CCCCCCCcEEeccccCCchhhhhhccCCCCcCeeecccCcCCCcCccccccCcccceeeccccccc
Q 036466 507 VVTTKQKSLLESG-IGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNACPRLNLLPPAMKYLSSLERLIFDECESL 585 (727)
Q Consensus 507 ~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l 585 (727)
++++|.+..++.. +..+++|++|++++|......+..+..+++|+.|++++|...+..+..+..+++|+
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~---------- 184 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLK---------- 184 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC----------
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCC----------
Confidence 7777776644433 46666666666666543322223345666666666666654433333344444444
Q ss_pred cccccccccccCCCCCCCCCCceeeEEEecCCCCCCCcchhhhcCCCCcccEEEecCCCCccccCccCcccccccccccc
Q 036466 586 SLSLNMEMKEEGSHHDRKNVGSHLRTLYVARLTPLLELPQWLLQGSSKTLQTLAIGDCPNFMALPGSLKDLEALENLVIG 665 (727)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~ 665 (727)
.|+|++|......+..+ ..+++|+.|++++|.+. +.+++|+.|++.
T Consensus 185 -------------------------~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~ 230 (272)
T 3rfs_A 185 -------------------------DLRLYQNQLKSVPDGVF--DRLTSLQYIWLHDNPWD-------CTCPGIRYLSEW 230 (272)
T ss_dssp -------------------------EEECCSSCCSCCCTTTT--TTCTTCCEEECCSSCBC-------CCTTTTHHHHHH
T ss_pred -------------------------EEECCCCcCCccCHHHH--hCCcCCCEEEccCCCcc-------ccCcHHHHHHHH
Confidence 44555554333333333 56788999999888643 345678899999
Q ss_pred ccccccccCccCCCCCccCe
Q 036466 666 ICPKLSSLPEGMHHLTTLKT 685 (727)
Q Consensus 666 ~~~~~~~l~~~l~~l~~L~~ 685 (727)
.|...+.+|.+++.++....
T Consensus 231 ~n~~~g~ip~~~~~~~~~~~ 250 (272)
T 3rfs_A 231 INKHSGVVRNSAGSVAPDSA 250 (272)
T ss_dssp HHHTGGGBBCTTSCBCGGGS
T ss_pred HHhCCCcccCcccccCCCCC
Confidence 98888888888777655433
No 69
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.73 E-value=9.1e-19 Score=181.72 Aligned_cols=226 Identities=16% Similarity=0.099 Sum_probs=116.0
Q ss_pred CcceEEEecCCCccccccccCCCCcCcEEeccCCccccc-cCccccCCCCCCEeecCCCCCCcccChhhcccccCceeEe
Q 036466 430 KSLRVLVLTNSAIEVLPRKMGNLKQLRHLDLSGNRKIKK-LPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVV 508 (727)
Q Consensus 430 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 508 (727)
++++.|++++|.+...+..+..+++|++|++++|.+... +|..+..+++|++|++++|......+..+..+++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 556666666666555444455556666666666553332 4444555566666666655544444444555555555555
Q ss_pred ccc-ccccccccCCCCCCCcEEeccccCCchhhhhhccCCCCcCeeecccC-cCCCc-CccccccCc-ccceeeccccc-
Q 036466 509 TTK-QKSLLESGIGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNAC-PRLNL-LPPAMKYLS-SLERLIFDECE- 583 (727)
Q Consensus 509 ~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~-~~~~~-~~~~l~~l~-~L~~L~l~~~~- 583 (727)
++| .++. ..++..+..+++|+.|++++| ..... ++..+..++ +|++|++++|.
T Consensus 150 ~~~~~l~~----------------------~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~ 207 (336)
T 2ast_B 150 SGCSGFSE----------------------FALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK 207 (336)
T ss_dssp TTCBSCCH----------------------HHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGG
T ss_pred CCCCCCCH----------------------HHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcc
Confidence 554 3331 023333444444555555444 22111 233344444 45555554442
Q ss_pred cccccccccccccCCCCCCCCCCceeeEEEecCCCCCC-CcchhhhcCCCCcccEEEecCCCCcc-ccCccCcccccccc
Q 036466 584 SLSLSLNMEMKEEGSHHDRKNVGSHLRTLYVARLTPLL-ELPQWLLQGSSKTLQTLAIGDCPNFM-ALPGSLKDLEALEN 661 (727)
Q Consensus 584 ~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~-~l~~~~~~~~~~~L~~L~L~~~~~~~-~~~~~l~~l~~L~~ 661 (727)
.++.. .++..+..+++|+.|+|++|..++ ..+..+ ..+++|++|++++|.... .....+..+++|+.
T Consensus 208 ~~~~~---------~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 276 (336)
T 2ast_B 208 NLQKS---------DLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF--FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKT 276 (336)
T ss_dssp GSCHH---------HHHHHHHHCTTCSEEECTTCTTCCGGGGGGG--GGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred cCCHH---------HHHHHHhhCCCCCEEeCCCCCcCCHHHHHHH--hCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCE
Confidence 11100 011122234456666666665322 333344 457899999999985222 22224778999999
Q ss_pred ccccccccccccCccCCCC-CccCeeeccCCc
Q 036466 662 LVIGICPKLSSLPEGMHHL-TTLKTLAIEECP 692 (727)
Q Consensus 662 L~l~~~~~~~~l~~~l~~l-~~L~~L~l~~c~ 692 (727)
|++++| +.. ..+..+ .+|+.|++++|.
T Consensus 277 L~l~~~--i~~--~~~~~l~~~l~~L~l~~n~ 304 (336)
T 2ast_B 277 LQVFGI--VPD--GTLQLLKEALPHLQINCSH 304 (336)
T ss_dssp EECTTS--SCT--TCHHHHHHHSTTSEESCCC
T ss_pred EeccCc--cCH--HHHHHHHhhCcceEEeccc
Confidence 999998 211 122333 346677776543
No 70
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.73 E-value=5.4e-17 Score=163.74 Aligned_cols=201 Identities=20% Similarity=0.116 Sum_probs=152.0
Q ss_pred hcCCCcceEEEecCCCccccccccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcccccCce
Q 036466 426 ISKSKSLRVLVLTNSAIEVLPRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRM 505 (727)
Q Consensus 426 ~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 505 (727)
+.++++++.++++++.+..+|..+. ++++.|++++|.+.+..+..+..+++|++|++++|.+.. ++.. ..+++|+.
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~-~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD-GTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECC-SCCTTCCE
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCC-CCCCcCCE
Confidence 5678899999999999998887765 689999999998666666778899999999999876544 3332 78889999
Q ss_pred eEecccccccccccCCCCCCCcEEeccccCCchhhhhhccCCCCcCeeecccCcCCCcCccccccCcccceeeccccccc
Q 036466 506 FVVTTKQKSLLESGIGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNACPRLNLLPPAMKYLSSLERLIFDECESL 585 (727)
Q Consensus 506 L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l 585 (727)
|++++|.+..+|..+..+++|++|++++|......+..+..+++|+.|++++|......+..+..+++|+.|++++|.-.
T Consensus 82 L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 161 (290)
T 1p9a_G 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161 (290)
T ss_dssp EECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred EECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence 99999999988888888999999999987554433466888899999999988775544455677888888888876322
Q ss_pred cccccccccccCCCC-CCCCCCceeeEEEecCCCCCCCcchhhhcCCCCcccEEEecCCCC
Q 036466 586 SLSLNMEMKEEGSHH-DRKNVGSHLRTLYVARLTPLLELPQWLLQGSSKTLQTLAIGDCPN 645 (727)
Q Consensus 586 ~~~~~~~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~~~L~~L~L~~~~~ 645 (727)
.++ ..+..+++|+.|+|++|.. ..+|..+ ..+++|+.|+|++|+.
T Consensus 162 ------------~l~~~~~~~l~~L~~L~L~~N~l-~~ip~~~--~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 162 ------------ELPAGLLNGLENLDTLLLQENSL-YTIPKGF--FGSHLLPFAFLHGNPW 207 (290)
T ss_dssp ------------CCCTTTTTTCTTCCEEECCSSCC-CCCCTTT--TTTCCCSEEECCSCCB
T ss_pred ------------ccCHHHhcCcCCCCEEECCCCcC-CccChhh--cccccCCeEEeCCCCc
Confidence 122 2344567777777777743 3566555 4456777777777754
No 71
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.73 E-value=7.1e-17 Score=178.90 Aligned_cols=218 Identities=25% Similarity=0.175 Sum_probs=131.3
Q ss_pred CCcceEEEecCCCccccccccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcccccCceeEe
Q 036466 429 SKSLRVLVLTNSAIEVLPRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVV 508 (727)
Q Consensus 429 ~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 508 (727)
+++|++|++++|.+..+|. .+++|++|++++|. +..+|. .+++|++|++++|.+ ..+|.. +++|++|++
T Consensus 80 l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-l~~l~~---~l~~L~~L~L~~N~l-~~lp~~---l~~L~~L~L 148 (622)
T 3g06_A 80 PPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNP-LTHLPA---LPSGLCKLWIFGNQL-TSLPVL---PPGLQELSV 148 (622)
T ss_dssp CTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCC-CCCCCC---CCTTCCEEECCSSCC-SCCCCC---CTTCCEEEC
T ss_pred CCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCc-CCCCCC---CCCCcCEEECCCCCC-CcCCCC---CCCCCEEEC
Confidence 4555555555555555444 34555555555554 233333 334555555555432 223332 255555555
Q ss_pred cccccccccccCCCCCCCcEEeccccCCchhhhhhccCCCCcCeeecccCcCCCcCccccccCcccceeecccccccccc
Q 036466 509 TTKQKSLLESGIGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNACPRLNLLPPAMKYLSSLERLIFDECESLSLS 588 (727)
Q Consensus 509 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~ 588 (727)
++|.++.+|. .+++|+.|++++|. +..+| ..+++|+.|++++|... .+|.. +++|+.|++++|...
T Consensus 149 s~N~l~~l~~---~~~~L~~L~L~~N~-l~~l~---~~~~~L~~L~Ls~N~l~-~l~~~---~~~L~~L~L~~N~l~--- 214 (622)
T 3g06_A 149 SDNQLASLPA---LPSELCKLWAYNNQ-LTSLP---MLPSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLT--- 214 (622)
T ss_dssp CSSCCSCCCC---CCTTCCEEECCSSC-CSCCC---CCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS---
T ss_pred cCCcCCCcCC---ccCCCCEEECCCCC-CCCCc---ccCCCCcEEECCCCCCC-CCCCc---cchhhEEECcCCccc---
Confidence 5555554442 23455555555543 22333 33466667777666543 34432 356666666665321
Q ss_pred ccccccccCCCCCCCCCCceeeEEEecCCCCCCCcchhhhcCCCCcccEEEecCCCCccccCccCccccccccccccccc
Q 036466 589 LNMEMKEEGSHHDRKNVGSHLRTLYVARLTPLLELPQWLLQGSSKTLQTLAIGDCPNFMALPGSLKDLEALENLVIGICP 668 (727)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 668 (727)
.++ ...++|+.|+|++|.. ..+| ..+++|+.|+|++|.+ +.+|. .+++|+.|+|++|.
T Consensus 215 ---------~l~---~~~~~L~~L~Ls~N~L-~~lp-----~~l~~L~~L~Ls~N~L-~~lp~---~~~~L~~L~Ls~N~ 272 (622)
T 3g06_A 215 ---------SLP---ALPSGLKELIVSGNRL-TSLP-----VLPSELKELMVSGNRL-TSLPM---LPSGLLSLSVYRNQ 272 (622)
T ss_dssp ---------SCC---CCCTTCCEEECCSSCC-SCCC-----CCCTTCCEEECCSSCC-SCCCC---CCTTCCEEECCSSC
T ss_pred ---------ccC---CCCCCCCEEEccCCcc-CcCC-----CCCCcCcEEECCCCCC-CcCCc---ccccCcEEeCCCCC
Confidence 112 2347899999999844 4455 3568999999999864 46665 67899999999997
Q ss_pred cccccCccCCCCCccCeeeccCCcch
Q 036466 669 KLSSLPEGMHHLTTLKTLAIEECPAL 694 (727)
Q Consensus 669 ~~~~l~~~l~~l~~L~~L~l~~c~~l 694 (727)
+. .+|..+..+++|+.|++++|+.-
T Consensus 273 L~-~lp~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 273 LT-RLPESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp CC-SCCGGGGGSCTTCEEECCSCCCC
T ss_pred CC-cCCHHHhhccccCEEEecCCCCC
Confidence 55 88988999999999999999864
No 72
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.73 E-value=4.6e-17 Score=164.20 Aligned_cols=203 Identities=20% Similarity=0.160 Sum_probs=141.2
Q ss_pred cCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcccccCceeEecccccccccccCCCCCCCcE
Q 036466 449 MGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTKQKSLLESGIGCLSSLRF 528 (727)
Q Consensus 449 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~ 528 (727)
+.++++++.++++++. +..+|..+. ++++.|++++|.+....+..+..+++|+.|++++|.++.++.. ..+++|++
T Consensus 6 ~~~l~~l~~l~~~~~~-l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRN-LTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSC-CSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCE
T ss_pred ccccCCccEEECCCCC-CCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCE
Confidence 5567889999999887 567776553 6899999999887777778899999999999999999876654 78889999
Q ss_pred EeccccCCchhhhhhccCCCCcCeeecccCcCCCcCccccccCcccceeeccccccccccccccccccCCCCCCCCCCce
Q 036466 529 LMISNCGNLEYLFEDIDQLSVLRSLVVNACPRLNLLPPAMKYLSSLERLIFDECESLSLSLNMEMKEEGSHHDRKNVGSH 608 (727)
Q Consensus 529 L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 608 (727)
|++++| .+..+|..+..+++|+.|++++|......+..+..+++|++|++++|..... .+..+..+++
T Consensus 82 L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~-----------~~~~~~~l~~ 149 (290)
T 1p9a_G 82 LDLSHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL-----------PPGLLTPTPK 149 (290)
T ss_dssp EECCSS-CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCC-----------CTTTTTTCTT
T ss_pred EECCCC-cCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCcc-----------ChhhcccccC
Confidence 999986 4457777788889999999998877655456677888888888887632211 1222344556
Q ss_pred eeEEEecCCCCCCCcchhhhcCCCCcccEEEecCCCCccccCccCccccccccccccccccc
Q 036466 609 LRTLYVARLTPLLELPQWLLQGSSKTLQTLAIGDCPNFMALPGSLKDLEALENLVIGICPKL 670 (727)
Q Consensus 609 L~~L~L~~~~~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 670 (727)
|+.|+|++|... .++...+ ..+++|+.|+|++|.+ ..+|..+..+++|+.|+|++|+..
T Consensus 150 L~~L~L~~N~l~-~l~~~~~-~~l~~L~~L~L~~N~l-~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 150 LEKLSLANNNLT-ELPAGLL-NGLENLDTLLLQENSL-YTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCEEECTTSCCS-CCCTTTT-TTCTTCCEEECCSSCC-CCCCTTTTTTCCCSEEECCSCCBC
T ss_pred CCEEECCCCcCC-ccCHHHh-cCcCCCCEEECCCCcC-CccChhhcccccCCeEEeCCCCcc
Confidence 666666665332 3332221 3455666666665543 345555555556666666665543
No 73
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.73 E-value=1.6e-19 Score=196.38 Aligned_cols=308 Identities=15% Similarity=0.061 Sum_probs=199.8
Q ss_pred CeeEEEeccCCCc-chhhhhhhhhcCCCcceEEEecCCCcccc-----ccc-cCCCCcCcEEeccCCccccc----cCcc
Q 036466 404 RVRTILFPIDDER-TSQSFVTSCISKSKSLRVLVLTNSAIEVL-----PRK-MGNLKQLRHLDLSGNRKIKK----LPNS 472 (727)
Q Consensus 404 ~~~~l~~~~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-----~~~-~~~l~~L~~L~l~~~~~~~~----~~~~ 472 (727)
.++.+.+....-. .....++..+..+++|+.|++++|.+... ... ....++|++|++++|.+... ++..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 4667776543222 22245677788889999999998887632 111 23356799999988875542 3555
Q ss_pred ccCCCCCCEeecCCCCCCcccChhhc-----ccccCceeEeccccccc-----ccccCCCCCCCcEEeccccCCchh---
Q 036466 473 ICELQSLQTLNLGDCLELEELPKDIR-----YLVSLRMFVVTTKQKSL-----LESGIGCLSSLRFLMISNCGNLEY--- 539 (727)
Q Consensus 473 ~~~l~~L~~L~l~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~-----~~~~~~~l~~L~~L~l~~~~~~~~--- 539 (727)
+..+++|++|++++|......+..+. ..++|++|++++|.++. ++..+..+++|++|++++|.....
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 245 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA 245 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence 66778899999988775443333332 25589999999888874 455667788999999998754332
Q ss_pred -hhh-hccCCCCcCeeecccCcCCCc----CccccccCcccceeeccccccccccccccccccCCCCC-CCCCCceeeEE
Q 036466 540 -LFE-DIDQLSVLRSLVVNACPRLNL----LPPAMKYLSSLERLIFDECESLSLSLNMEMKEEGSHHD-RKNVGSHLRTL 612 (727)
Q Consensus 540 -l~~-~l~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~L~~L 612 (727)
+.. ....+++|+.|++++|..... ++..+..+++|++|++++|..-... .. .+.. .....++|+.|
T Consensus 246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~-~~------~l~~~l~~~~~~L~~L 318 (461)
T 1z7x_W 246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG-AR------LLCETLLEPGCQLESL 318 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHH-HH------HHHHHHTSTTCCCCEE
T ss_pred HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHH-HH------HHHHHhccCCccceee
Confidence 222 233578899999998865432 5666777889999999887431110 00 0011 11233589999
Q ss_pred EecCCCCCCC----cchhhhcCCCCcccEEEecCCCCccccCccCc-----ccccccccccccccccc----ccCccCCC
Q 036466 613 YVARLTPLLE----LPQWLLQGSSKTLQTLAIGDCPNFMALPGSLK-----DLEALENLVIGICPKLS----SLPEGMHH 679 (727)
Q Consensus 613 ~L~~~~~~~~----l~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~----~l~~~l~~ 679 (727)
+|++|..... ++..+ ..+++|++|+|++|.+....+..+. ..++|++|++++|.... .++..+..
T Consensus 319 ~L~~n~l~~~~~~~l~~~l--~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~ 396 (461)
T 1z7x_W 319 WVKSCSFTAACCSHFSSVL--AQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLA 396 (461)
T ss_dssp ECTTSCCBGGGHHHHHHHH--HHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHH
T ss_pred EcCCCCCchHHHHHHHHHH--hhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHh
Confidence 9999975543 33333 4568999999999876543332222 26799999999998764 67777788
Q ss_pred CCccCeeeccCCcchhhhcCCCCCCCCCccCCCCceeeccc
Q 036466 680 LTTLKTLAIEECPALCERCKPLTGEDWPKIAHIPQIVFDGE 720 (727)
Q Consensus 680 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (727)
+++|+.|++++|+.-......+..........+..+.+.+.
T Consensus 397 ~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~ 437 (461)
T 1z7x_W 397 NHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDI 437 (461)
T ss_dssp CCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTC
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeeccc
Confidence 99999999999976544333222222223345666666553
No 74
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.73 E-value=2.1e-19 Score=195.31 Aligned_cols=162 Identities=19% Similarity=0.136 Sum_probs=79.8
Q ss_pred hhhhhhcCCCcceEEEecCCCcccc-ccc-cCCCC----cCcEEeccCCcccc----ccCccccCCCCCCEeecCCCCCC
Q 036466 421 FVTSCISKSKSLRVLVLTNSAIEVL-PRK-MGNLK----QLRHLDLSGNRKIK----KLPNSICELQSLQTLNLGDCLEL 490 (727)
Q Consensus 421 ~~~~~~~~~~~L~~L~l~~~~~~~l-~~~-~~~l~----~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~ 490 (727)
.++..+..+++|++|++++|.+... +.. ...+. +|++|++++|.+.. .++..+..+++|++|++++|...
T Consensus 47 ~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 126 (461)
T 1z7x_W 47 DISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG 126 (461)
T ss_dssp HHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred HHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCc
Confidence 3445566666666666666665421 111 11122 46666666665432 34555666666666666665543
Q ss_pred cccChhhc-----ccccCceeEeccccccc-----ccccCCCCCCCcEEeccccCCchhhhhhcc-----CCCCcCeeec
Q 036466 491 EELPKDIR-----YLVSLRMFVVTTKQKSL-----LESGIGCLSSLRFLMISNCGNLEYLFEDID-----QLSVLRSLVV 555 (727)
Q Consensus 491 ~~~~~~l~-----~l~~L~~L~l~~~~~~~-----~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~-----~l~~L~~L~l 555 (727)
...+..+. ..++|++|++++|.++. ++..+..+++|++|++++|......+..+. .+++|+.|++
T Consensus 127 ~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L 206 (461)
T 1z7x_W 127 DAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKL 206 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEEC
T ss_pred hHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEc
Confidence 32222221 13356666666665552 223344455666666666543222222221 2345666666
Q ss_pred ccCcCCCc----CccccccCcccceeecccc
Q 036466 556 NACPRLNL----LPPAMKYLSSLERLIFDEC 582 (727)
Q Consensus 556 ~~~~~~~~----~~~~l~~l~~L~~L~l~~~ 582 (727)
++|..... ++..+..+++|++|++++|
T Consensus 207 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 237 (461)
T 1z7x_W 207 ESCGVTSDNCRDLCGIVASKASLRELALGSN 237 (461)
T ss_dssp TTSCCBTTHHHHHHHHHHHCTTCCEEECCSS
T ss_pred cCCCCcHHHHHHHHHHHHhCCCccEEeccCC
Confidence 65544321 3444445555666666555
No 75
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.72 E-value=1.4e-19 Score=191.63 Aligned_cols=266 Identities=14% Similarity=0.092 Sum_probs=181.4
Q ss_pred hhhhhhhhhcCCCcceEEEecCCCccc-----cccccCCCCcCcEEeccCCcc---ccccCccc-------cCCCCCCEe
Q 036466 418 SQSFVTSCISKSKSLRVLVLTNSAIEV-----LPRKMGNLKQLRHLDLSGNRK---IKKLPNSI-------CELQSLQTL 482 (727)
Q Consensus 418 ~~~~~~~~~~~~~~L~~L~l~~~~~~~-----l~~~~~~l~~L~~L~l~~~~~---~~~~~~~~-------~~l~~L~~L 482 (727)
....+...+..+++|+.|++++|.+.. ++..+..+++|++|++++|.. .+.+|..+ ..+++|++|
T Consensus 20 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L 99 (386)
T 2ca6_A 20 DEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTV 99 (386)
T ss_dssp HHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEE
T ss_pred HHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEE
Confidence 344456678889999999999998873 445578899999999998742 23445444 688999999
Q ss_pred ecCCCCCCc----ccChhhcccccCceeEeccccccc-----ccccCCCC---------CCCcEEeccccCCc-hhhh--
Q 036466 483 NLGDCLELE----ELPKDIRYLVSLRMFVVTTKQKSL-----LESGIGCL---------SSLRFLMISNCGNL-EYLF-- 541 (727)
Q Consensus 483 ~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~-----~~~~~~~l---------~~L~~L~l~~~~~~-~~l~-- 541 (727)
++++|.+.. .+|..+.++++|++|++++|.++. ++..+..+ ++|++|++++|... ..++
T Consensus 100 ~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l 179 (386)
T 2ca6_A 100 RLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW 179 (386)
T ss_dssp ECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHH
T ss_pred ECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHH
Confidence 999987766 477788899999999999998872 22233344 88999999998654 2333
Q ss_pred -hhccCCCCcCeeecccCcCCC-----cCccccccCcccceeeccccccccccccccccccCCCCCCCCCCceeeEEEec
Q 036466 542 -EDIDQLSVLRSLVVNACPRLN-----LLPPAMKYLSSLERLIFDECESLSLSLNMEMKEEGSHHDRKNVGSHLRTLYVA 615 (727)
Q Consensus 542 -~~l~~l~~L~~L~l~~~~~~~-----~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~ 615 (727)
..+..+++|+.|++++|.... ..+..+..+++|+.|++++|..-. . ....++..+..+++|+.|+|+
T Consensus 180 ~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~-~------g~~~l~~~l~~~~~L~~L~L~ 252 (386)
T 2ca6_A 180 AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTH-L------GSSALAIALKSWPNLRELGLN 252 (386)
T ss_dssp HHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHH-H------HHHHHHHHGGGCTTCCEEECT
T ss_pred HHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCc-H------HHHHHHHHHccCCCcCEEECC
Confidence 567788899999999887642 233367778889999988874311 0 011223344566788888888
Q ss_pred CCCCCCC----cchhhhcCCCCcccEEEecCCCCcc----ccCccC-ccccccccccccccccccccC--ccC-CCCCcc
Q 036466 616 RLTPLLE----LPQWLLQGSSKTLQTLAIGDCPNFM----ALPGSL-KDLEALENLVIGICPKLSSLP--EGM-HHLTTL 683 (727)
Q Consensus 616 ~~~~~~~----l~~~~~~~~~~~L~~L~L~~~~~~~----~~~~~l-~~l~~L~~L~l~~~~~~~~l~--~~l-~~l~~L 683 (727)
+|..... ++..+..+.+++|++|+|++|.+.. .+|..+ .++++|+.|++++|+.....+ ..+ ..++++
T Consensus 253 ~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~ 332 (386)
T 2ca6_A 253 DCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTR 332 (386)
T ss_dssp TCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHH
T ss_pred CCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhc
Confidence 8864433 2333322347788888888887665 366656 557888888888887665432 111 124555
Q ss_pred CeeeccC
Q 036466 684 KTLAIEE 690 (727)
Q Consensus 684 ~~L~l~~ 690 (727)
+.+++..
T Consensus 333 ~~~~l~~ 339 (386)
T 2ca6_A 333 GRGELDE 339 (386)
T ss_dssp TCCEECC
T ss_pred Ccchhhh
Confidence 5555543
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.72 E-value=7.2e-17 Score=162.14 Aligned_cols=223 Identities=19% Similarity=0.116 Sum_probs=171.9
Q ss_pred EEEecCCCccccccccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcccccCceeEeccccc
Q 036466 434 VLVLTNSAIEVLPRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTKQK 513 (727)
Q Consensus 434 ~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 513 (727)
.++..+..+..+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|......+..+..+++|++|++++|.+
T Consensus 11 ~~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EEECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred eEEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 45667777777887664 6899999999986555455788999999999999877666667899999999999999999
Q ss_pred cccc-ccCCCCCCCcEEeccccCCchhhhhhccCCCCcCeeecccCcCCC-cCccccccCcccceeeccccccccccccc
Q 036466 514 SLLE-SGIGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNACPRLN-LLPPAMKYLSSLERLIFDECESLSLSLNM 591 (727)
Q Consensus 514 ~~~~-~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~l~~~~~~ 591 (727)
...+ ..+..+++|++|++++|......+..+..+++|+.|++++|.... .+|..+..+++|++|++++|......
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~--- 165 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY--- 165 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC---
T ss_pred CccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCC---
Confidence 8555 568999999999999986554444468899999999999998755 36888999999999999998543221
Q ss_pred cccccCCCCCCCCCCceee----EEEecCCCCCCCcchhhhcCCCCcccEEEecCCCCccccCccCcccccccccccccc
Q 036466 592 EMKEEGSHHDRKNVGSHLR----TLYVARLTPLLELPQWLLQGSSKTLQTLAIGDCPNFMALPGSLKDLEALENLVIGIC 667 (727)
Q Consensus 592 ~~~~~~~~~~~~~~~~~L~----~L~L~~~~~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~ 667 (727)
+..+..+.+|+ +|++++|... .++... ....+|++|++++|.+.+..+..+..+++|+.|++++|
T Consensus 166 --------~~~~~~l~~L~~l~l~L~ls~n~l~-~~~~~~--~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 166 --------CTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGA--FKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp --------GGGGHHHHTCTTCCEEEECCSSCCC-EECTTS--SCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSS
T ss_pred --------HHHhhhhhhccccceeeecCCCccc-ccCccc--cCCCcccEEECCCCceeecCHhHhcccccccEEEccCC
Confidence 11222333444 8999998654 444333 34458999999999866554555789999999999999
Q ss_pred ccccc
Q 036466 668 PKLSS 672 (727)
Q Consensus 668 ~~~~~ 672 (727)
+...+
T Consensus 235 ~~~c~ 239 (276)
T 2z62_A 235 PWDCS 239 (276)
T ss_dssp CBCCC
T ss_pred ccccc
Confidence 76543
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.72 E-value=1.3e-16 Score=159.64 Aligned_cols=150 Identities=18% Similarity=0.125 Sum_probs=104.8
Q ss_pred cceEEEecCCCccccccccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcccccCceeEecc
Q 036466 431 SLRVLVLTNSAIEVLPRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTT 510 (727)
Q Consensus 431 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 510 (727)
..+.++++++.++.+|..+. .+++.|++++|.+.+..+..+..+++|++|++++|......+..+..+++|++|++++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 46789999998888887654 6788999988885444445688888899999988765544444567788888888888
Q ss_pred cccccccc-cCCCCCCCcEEeccccCCchhhhhhccCCCCcCeeecccCcCCCcCccccccCcccceeecccc
Q 036466 511 KQKSLLES-GIGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNACPRLNLLPPAMKYLSSLERLIFDEC 582 (727)
Q Consensus 511 ~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 582 (727)
|.+..++. .+..+++|++|++++|......+..+..+++|+.|++++|......+..+..+++|++|++++|
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 167 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNN 167 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCC
Confidence 88875553 4567778888888776544434455677777777777777654333334555666666666654
No 78
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.72 E-value=2.2e-18 Score=178.80 Aligned_cols=158 Identities=21% Similarity=0.213 Sum_probs=126.5
Q ss_pred hcCCCcceEEEecCCCccc--cccccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCc--ccChhhcccc
Q 036466 426 ISKSKSLRVLVLTNSAIEV--LPRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELE--ELPKDIRYLV 501 (727)
Q Consensus 426 ~~~~~~L~~L~l~~~~~~~--l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~l~~l~ 501 (727)
+.++++|+.|++++|.+.. ++..+..+++|++|++++|.+.+..+..+..+++|++|++++|.... .++..+.+++
T Consensus 89 ~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~ 168 (336)
T 2ast_B 89 HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 168 (336)
T ss_dssp CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCT
T ss_pred hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCC
Confidence 4578999999999999873 77778999999999999998766778888999999999999985444 3677788999
Q ss_pred cCceeEeccc-cccc--ccccCCCCC-CCcEEeccccC-Cc--hhhhhhccCCCCcCeeecccCcC-CCcCccccccCcc
Q 036466 502 SLRMFVVTTK-QKSL--LESGIGCLS-SLRFLMISNCG-NL--EYLFEDIDQLSVLRSLVVNACPR-LNLLPPAMKYLSS 573 (727)
Q Consensus 502 ~L~~L~l~~~-~~~~--~~~~~~~l~-~L~~L~l~~~~-~~--~~l~~~l~~l~~L~~L~l~~~~~-~~~~~~~l~~l~~ 573 (727)
+|++|++++| .++. ++..+..++ +|++|++++|. .+ ..++..+..+++|+.|++++|.. ....+..+..+++
T Consensus 169 ~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~ 248 (336)
T 2ast_B 169 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNY 248 (336)
T ss_dssp TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTT
T ss_pred CCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCC
Confidence 9999999999 7773 556677788 99999999874 22 45667777888999999988873 3345556667777
Q ss_pred cceeeccccc
Q 036466 574 LERLIFDECE 583 (727)
Q Consensus 574 L~~L~l~~~~ 583 (727)
|++|++++|.
T Consensus 249 L~~L~l~~~~ 258 (336)
T 2ast_B 249 LQHLSLSRCY 258 (336)
T ss_dssp CCEEECTTCT
T ss_pred CCEeeCCCCC
Confidence 7777777764
No 79
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.72 E-value=1.4e-16 Score=176.49 Aligned_cols=238 Identities=22% Similarity=0.218 Sum_probs=166.8
Q ss_pred CcceEEEecCCCccccccccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcccccCceeEec
Q 036466 430 KSLRVLVLTNSAIEVLPRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVT 509 (727)
Q Consensus 430 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 509 (727)
++|+.|++++|.+..+|. .+++|++|++++|. ++.+|. .+++|++|++++|.+ ..+|. .+.+|+.|+++
T Consensus 61 ~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~l-~~l~~---~l~~L~~L~L~ 129 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQ-LTSLPV---LPPGLLELSIFSNPL-THLPA---LPSGLCKLWIF 129 (622)
T ss_dssp TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCC-CSCCCC---CCTTCCEEEECSCCC-CCCCC---CCTTCCEEECC
T ss_pred CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCc-CCcCCC---CCCCCCEEECcCCcC-CCCCC---CCCCcCEEECC
Confidence 678888888888887776 46788888888887 445665 567888888887643 34554 56778888888
Q ss_pred ccccccccccCCCCCCCcEEeccccCCchhhhhhccCCCCcCeeecccCcCCCcCccccccCcccceeeccccccccccc
Q 036466 510 TKQKSLLESGIGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNACPRLNLLPPAMKYLSSLERLIFDECESLSLSL 589 (727)
Q Consensus 510 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~ 589 (727)
+|.++.+|.. +++|++|++++|. +..+|. .+++|+.|++++|... .+| ..+++|+.|++++|....
T Consensus 130 ~N~l~~lp~~---l~~L~~L~Ls~N~-l~~l~~---~~~~L~~L~L~~N~l~-~l~---~~~~~L~~L~Ls~N~l~~--- 195 (622)
T 3g06_A 130 GNQLTSLPVL---PPGLQELSVSDNQ-LASLPA---LPSELCKLWAYNNQLT-SLP---MLPSGLQELSVSDNQLAS--- 195 (622)
T ss_dssp SSCCSCCCCC---CTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC---
T ss_pred CCCCCcCCCC---CCCCCEEECcCCc-CCCcCC---ccCCCCEEECCCCCCC-CCc---ccCCCCcEEECCCCCCCC---
Confidence 8888776653 4788888888864 334443 3467888888877653 455 346788889888864221
Q ss_pred cccccccCCCCCCCCCCceeeEEEecCCCCCCCcchhhhcCCCCcccEEEecCCCCccccCccCcccccccccccccccc
Q 036466 590 NMEMKEEGSHHDRKNVGSHLRTLYVARLTPLLELPQWLLQGSSKTLQTLAIGDCPNFMALPGSLKDLEALENLVIGICPK 669 (727)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 669 (727)
++ ...++|+.|++++|.. ..++. .+++|+.|+|++|.+. .+| ..+++|+.|++++|.
T Consensus 196 ---------l~---~~~~~L~~L~L~~N~l-~~l~~-----~~~~L~~L~Ls~N~L~-~lp---~~l~~L~~L~Ls~N~- 252 (622)
T 3g06_A 196 ---------LP---TLPSELYKLWAYNNRL-TSLPA-----LPSGLKELIVSGNRLT-SLP---VLPSELKELMVSGNR- 252 (622)
T ss_dssp ---------CC---CCCTTCCEEECCSSCC-SSCCC-----CCTTCCEEECCSSCCS-CCC---CCCTTCCEEECCSSC-
T ss_pred ---------CC---CccchhhEEECcCCcc-cccCC-----CCCCCCEEEccCCccC-cCC---CCCCcCcEEECCCCC-
Confidence 12 2346899999998854 44542 3588999999998654 466 466899999999986
Q ss_pred ccccCccCCCCCccCeeeccCCcchhhhcCCCCCCCCCccCCCCceeeccccccc
Q 036466 670 LSSLPEGMHHLTTLKTLAIEECPALCERCKPLTGEDWPKIAHIPQIVFDGEMIKS 724 (727)
Q Consensus 670 ~~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (727)
+..+|. .+++|+.|++++|..- .+. .....+.++..+.+.+|.+.+
T Consensus 253 L~~lp~---~~~~L~~L~Ls~N~L~-----~lp-~~l~~l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 253 LTSLPM---LPSGLLSLSVYRNQLT-----RLP-ESLIHLSSETTVNLEGNPLSE 298 (622)
T ss_dssp CSCCCC---CCTTCCEEECCSSCCC-----SCC-GGGGGSCTTCEEECCSCCCCH
T ss_pred CCcCCc---ccccCcEEeCCCCCCC-----cCC-HHHhhccccCEEEecCCCCCC
Confidence 446776 6789999999998532 211 123455667777777777653
No 80
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.72 E-value=1.3e-16 Score=159.67 Aligned_cols=200 Identities=20% Similarity=0.178 Sum_probs=122.1
Q ss_pred CcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcccccCceeEeccccccccccc-CCCCCCCcEEec
Q 036466 453 KQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTKQKSLLESG-IGCLSSLRFLMI 531 (727)
Q Consensus 453 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l 531 (727)
.+++.++++++. +..+|..+. ++|++|++++|......+..+..+++|++|++++|.++.++.. +..+++|++|++
T Consensus 16 ~~~~~l~~~~~~-l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 16 NNKNSVDCSSKK-LTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTTEEECTTSC-CSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCCEEEccCCC-CCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 357788888877 556776543 5789999988776655556788889999999998888866654 477888888888
Q ss_pred cccCCchhhhhhccCCCCcCeeecccCcCCCcCccccccCcccceeeccccccccccccccccccCCCCCCCCCCceeeE
Q 036466 532 SNCGNLEYLFEDIDQLSVLRSLVVNACPRLNLLPPAMKYLSSLERLIFDECESLSLSLNMEMKEEGSHHDRKNVGSHLRT 611 (727)
Q Consensus 532 ~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~ 611 (727)
++|......+..+..+++|+.|++++|......+..+..+++|++|++++|..-.. ....+..+++|+.
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-----------~~~~~~~l~~L~~ 161 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSL-----------PKGVFDKLTSLKE 161 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-----------CTTTTTTCTTCCE
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCcc-----------CHhHccCCcccce
Confidence 88754433334567788888888888776555555566777777777776522111 0112334445555
Q ss_pred EEecCCCCCCCcchhhhcCCCCcccEEEecCCCCccccCccCccccccccccccccc
Q 036466 612 LYVARLTPLLELPQWLLQGSSKTLQTLAIGDCPNFMALPGSLKDLEALENLVIGICP 668 (727)
Q Consensus 612 L~L~~~~~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 668 (727)
|+|++|......+..+ ..+++|++|+|++|.+.+..+..+..+++|+.|++++|+
T Consensus 162 L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 162 LRLYNNQLKRVPEGAF--DKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp EECCSSCCSCCCTTTT--TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred eEecCCcCcEeChhHh--ccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 5555543222222222 334455555555554332222234445555555555544
No 81
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.71 E-value=2.3e-16 Score=164.67 Aligned_cols=299 Identities=13% Similarity=0.095 Sum_probs=182.2
Q ss_pred CCCCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCC------
Q 036466 45 FVRPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDS------ 118 (727)
Q Consensus 45 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~------ 118 (727)
+..+..|+||+++++.|.+++.. . ++++|+|++|+|||||++++++.. ..+|+++....
T Consensus 8 ~~~~~~~~gR~~el~~L~~~l~~------~--~~v~i~G~~G~GKT~Ll~~~~~~~-------~~~~~~~~~~~~~~~~~ 72 (350)
T 2qen_A 8 KTRREDIFDREEESRKLEESLEN------Y--PLTLLLGIRRVGKSSLLRAFLNER-------PGILIDCRELYAERGHI 72 (350)
T ss_dssp CCSGGGSCSCHHHHHHHHHHHHH------C--SEEEEECCTTSSHHHHHHHHHHHS-------SEEEEEHHHHHHTTTCB
T ss_pred CCChHhcCChHHHHHHHHHHHhc------C--CeEEEECCCcCCHHHHHHHHHHHc-------CcEEEEeecccccccCC
Confidence 34456799999999999999865 1 589999999999999999998632 16788875432
Q ss_pred CHHHHHHHHHHHhcC----------------CC--CCCCChHHHHHHHHHHhCC-ceEEEEEcCCCCCCh------hhHH
Q 036466 119 GKRQIMTKIINSVTG----------------GN--HGNLDPDRLQKVLRDSLNG-KRYLLVMDDVWNEDP------RAWG 173 (727)
Q Consensus 119 ~~~~~~~~ll~~l~~----------------~~--~~~~~~~~~~~~l~~~l~~-~~~LlvlDd~~~~~~------~~~~ 173 (727)
+...++..+...+.. .. ....+..++.+.+.+..+. ++++|||||+++.+. .++.
T Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~ 152 (350)
T 2qen_A 73 TREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELL 152 (350)
T ss_dssp CHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHH
T ss_pred CHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHH
Confidence 455666666655432 00 0113455566666665543 389999999987542 2333
Q ss_pred HHHHhhcCCCCCCEEEEecCchHHHHHH----hh----c-CCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHH
Q 036466 174 ELKSLLLGGAEGSKILVTTRSNKVALIM----AT----M-RGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGE 244 (727)
Q Consensus 174 ~~~~~l~~~~~~~~iliTsr~~~~~~~~----~~----~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 244 (727)
.....+....++.++|+|++........ .. . .....+.+.+|+.+|+.+++...+...+.. ...+.+.
T Consensus 153 ~~L~~~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~---~~~~~~~ 229 (350)
T 2qen_A 153 ALFAYAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD---VPENEIE 229 (350)
T ss_dssp HHHHHHHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC---CCHHHHH
T ss_pred HHHHHHHHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHH
Confidence 3333332223578899998876542221 10 1 112479999999999999998765322222 1235678
Q ss_pred HHHHHcCCchHHHHHHHhhhcCCCChhhHHHHHhccccccccCCCChhHHHHHhhhcC---ChhHHHHHhHhccCCCCCc
Q 036466 245 KIVEKCRGIPLAVRTVGSLLYGSTDEHDWEYVRDNDIWKLRQAPDDILPALRLSYDQL---PPHLKQCFAYCSIFPKDYE 321 (727)
Q Consensus 245 ~i~~~~~g~Plal~~~a~~l~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~~~~L---~~~~~~~~~~la~f~~~~~ 321 (727)
++++.++|+|+++..++..+........+ ... . .+.....+...+..+ ++..+.++..+|+ . .
T Consensus 230 ~i~~~tgG~P~~l~~~~~~~~~~~~~~~~--~~~-~-------~~~~~~~~~~~l~~l~~~~~~~~~~l~~la~-g-~-- 295 (350)
T 2qen_A 230 EAVELLDGIPGWLVVFGVEYLRNGDFGRA--MKR-T-------LEVAKGLIMGELEELRRRSPRYVDILRAIAL-G-Y-- 295 (350)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCHHHH--HHH-H-------HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHT-T-C--
T ss_pred HHHHHhCCCHHHHHHHHHHHhccccHhHH--HHH-H-------HHHHHHHHHHHHHHHHhCChhHHHHHHHHHh-C-C--
Confidence 99999999999999988764321111111 100 0 001111222223333 7888999999998 2 2
Q ss_pred cChHHHHHHHHhcccccCCCCCchHHHHHHHHHHHHHhCCcceecCCCCCCCceehhhHhhHHHHHHH
Q 036466 322 FASVHLVQLWMAHGLLQSPNKNEELENIGMRYFKELCSRSFFQDLGDLLPGLEVFNFQIHDLMHDLAL 389 (727)
Q Consensus 322 ~~~~~l~~~w~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~~~~~~~~h~li~~~~~ 389 (727)
.....+........ . ......+..+++.|.+.+++.... + .+...|+++++|.+
T Consensus 296 ~~~~~l~~~~~~~~--~-----~~~~~~~~~~l~~L~~~gli~~~~--~-----~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 296 NRWSLIRDYLAVKG--T-----KIPEPRLYALLENLKKMNWIVEED--N-----TYKIADPVVATVLR 349 (350)
T ss_dssp CSHHHHHHHHHHTT--C-----CCCHHHHHHHHHHHHHTTSEEEET--T-----EEEESSHHHHHHHT
T ss_pred CCHHHHHHHHHHHh--C-----CCCHHHHHHHHHHHHhCCCEEecC--C-----EEEEecHHHHHHHc
Confidence 33333333321110 0 011345678899999999998752 1 12345788887764
No 82
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.71 E-value=2.8e-17 Score=176.78 Aligned_cols=253 Identities=19% Similarity=0.166 Sum_probs=161.3
Q ss_pred hhhhhhcCCCcceEEEecCCCcc-ccccccCCCCcC-------------cEEeccCCccccccCccccCCCCCCEeecCC
Q 036466 421 FVTSCISKSKSLRVLVLTNSAIE-VLPRKMGNLKQL-------------RHLDLSGNRKIKKLPNSICELQSLQTLNLGD 486 (727)
Q Consensus 421 ~~~~~~~~~~~L~~L~l~~~~~~-~l~~~~~~l~~L-------------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 486 (727)
.+|..++++++|++|++++|.+. .+|..++.+.+| ++|++++|. ...+|.. .++|++|++++
T Consensus 25 ~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~-l~~lp~~---~~~L~~L~l~~ 100 (454)
T 1jl5_A 25 EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG-LSSLPEL---PPHLESLVASC 100 (454)
T ss_dssp ---------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC-CSCCCSC---CTTCSEEECCS
T ss_pred hCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc-cccCCCC---cCCCCEEEccC
Confidence 45566777777777777777766 566666666654 777777776 3444441 35677777777
Q ss_pred CCCCcccChhhcccccCceeEecccccccccccCCCCCCCcEEeccccCCchhhhhhccCCCCcCeeecccCcCCCcCcc
Q 036466 487 CLELEELPKDIRYLVSLRMFVVTTKQKSLLESGIGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNACPRLNLLPP 566 (727)
Q Consensus 487 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~ 566 (727)
|...+ +|.. +.+|+.|++++|.+..++.. .++|++|++++|.. ..+| .++.+++|++|++++|... .+|.
T Consensus 101 n~l~~-lp~~---~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l-~~lp-~~~~l~~L~~L~l~~N~l~-~lp~ 170 (454)
T 1jl5_A 101 NSLTE-LPEL---PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQL-EKLP-ELQNSSFLKIIDVDNNSLK-KLPD 170 (454)
T ss_dssp SCCSS-CCCC---CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCC-SSCC-CCTTCTTCCEEECCSSCCS-CCCC
T ss_pred CcCCc-cccc---cCCCcEEECCCCccCcccCC---CCCCCEEECcCCCC-CCCc-ccCCCCCCCEEECCCCcCc-ccCC
Confidence 65444 5543 36778888888877755432 26788888888644 3465 5778888888888887654 3554
Q ss_pred ccccCcccceeeccccccccccccccccccCCCCCCCCCCceeeEEEecCCCCCCCcchhhhcCCCCcccEEEecCCCCc
Q 036466 567 AMKYLSSLERLIFDECESLSLSLNMEMKEEGSHHDRKNVGSHLRTLYVARLTPLLELPQWLLQGSSKTLQTLAIGDCPNF 646 (727)
Q Consensus 567 ~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~~~L~~L~L~~~~~~ 646 (727)
.+ ++|++|++++|..- .++ .+..+++|+.|++++|... .++. ..++|++|++++|.+.
T Consensus 171 ~~---~~L~~L~L~~n~l~------------~l~-~~~~l~~L~~L~l~~N~l~-~l~~-----~~~~L~~L~l~~n~l~ 228 (454)
T 1jl5_A 171 LP---PSLEFIAAGNNQLE------------ELP-ELQNLPFLTAIYADNNSLK-KLPD-----LPLSLESIVAGNNILE 228 (454)
T ss_dssp CC---TTCCEEECCSSCCS------------SCC-CCTTCTTCCEEECCSSCCS-SCCC-----CCTTCCEEECCSSCCS
T ss_pred Cc---ccccEEECcCCcCC------------cCc-cccCCCCCCEEECCCCcCC-cCCC-----CcCcccEEECcCCcCC
Confidence 33 47888888876321 123 3667888999999888543 3442 2358999999988654
Q ss_pred cccCccCccccccccccccccccccccCccCCCCCccCeeeccCCcchhhhcCCCCCCCCCccCCCCceeeccccccc
Q 036466 647 MALPGSLKDLEALENLVIGICPKLSSLPEGMHHLTTLKTLAIEECPALCERCKPLTGEDWPKIAHIPQIVFDGEMIKS 724 (727)
Q Consensus 647 ~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (727)
.+|. +..+++|++|++++|... .+|. .+++|+.|++++|..- .. .....++..+.+.++.+.+
T Consensus 229 -~lp~-~~~l~~L~~L~l~~N~l~-~l~~---~~~~L~~L~l~~N~l~-----~l----~~~~~~L~~L~ls~N~l~~ 291 (454)
T 1jl5_A 229 -ELPE-LQNLPFLTTIYADNNLLK-TLPD---LPPSLEALNVRDNYLT-----DL----PELPQSLTFLDVSENIFSG 291 (454)
T ss_dssp -SCCC-CTTCTTCCEEECCSSCCS-SCCS---CCTTCCEEECCSSCCS-----CC----CCCCTTCCEEECCSSCCSE
T ss_pred -cccc-cCCCCCCCEEECCCCcCC-cccc---cccccCEEECCCCccc-----cc----CcccCcCCEEECcCCccCc
Confidence 6774 888999999999988654 4554 3578999999888632 11 1112456666666665543
No 83
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.70 E-value=2.8e-18 Score=181.50 Aligned_cols=249 Identities=15% Similarity=0.122 Sum_probs=142.8
Q ss_pred ecCCCccccccccCCCCcCcEEeccCCccccc----cCccccCCCCCCEeecCCCCC---CcccChhh-------ccccc
Q 036466 437 LTNSAIEVLPRKMGNLKQLRHLDLSGNRKIKK----LPNSICELQSLQTLNLGDCLE---LEELPKDI-------RYLVS 502 (727)
Q Consensus 437 l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~---~~~~~~~l-------~~l~~ 502 (727)
++...+..++..+..+++|++|++++|.+... ++..+..+++|++|++++|.. .+.+|..+ ..+++
T Consensus 16 l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~ 95 (386)
T 2ca6_A 16 ITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPK 95 (386)
T ss_dssp CCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTT
T ss_pred CCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCc
Confidence 33333444555566677777777777764443 233355677777777776422 22333333 56677
Q ss_pred CceeEeccccccc-----ccccCCCCCCCcEEeccccCCchh----hhhhccCC---------CCcCeeecccCcCC-Cc
Q 036466 503 LRMFVVTTKQKSL-----LESGIGCLSSLRFLMISNCGNLEY----LFEDIDQL---------SVLRSLVVNACPRL-NL 563 (727)
Q Consensus 503 L~~L~l~~~~~~~-----~~~~~~~l~~L~~L~l~~~~~~~~----l~~~l~~l---------~~L~~L~l~~~~~~-~~ 563 (727)
|++|++++|.++. ++..+..+++|++|++++|..... ++..+..+ ++|+.|++++|... ..
T Consensus 96 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~ 175 (386)
T 2ca6_A 96 LHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGS 175 (386)
T ss_dssp CCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGG
T ss_pred ccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHH
Confidence 7777777777663 445566677777777777654322 23333334 67777777777654 23
Q ss_pred Cc---cccccCcccceeeccccccccccccccccccCCCCCCCCCCceeeEEEecCCCCC----CCcchhhhcCCCCccc
Q 036466 564 LP---PAMKYLSSLERLIFDECESLSLSLNMEMKEEGSHHDRKNVGSHLRTLYVARLTPL----LELPQWLLQGSSKTLQ 636 (727)
Q Consensus 564 ~~---~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~----~~l~~~~~~~~~~~L~ 636 (727)
++ ..+..+++|++|++++|..-.... ....+..+..+++|+.|+|++|... ..++..+ ..+++|+
T Consensus 176 ~~~l~~~l~~~~~L~~L~L~~n~l~~~g~------~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l--~~~~~L~ 247 (386)
T 2ca6_A 176 MKEWAKTFQSHRLLHTVKMVQNGIRPEGI------EHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL--KSWPNLR 247 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCCHHHH------HHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHG--GGCTTCC
T ss_pred HHHHHHHHHhCCCcCEEECcCCCCCHhHH------HHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHH--ccCCCcC
Confidence 33 345566677777777763211000 0001123445667777777777543 3344444 4567777
Q ss_pred EEEecCCCCccc----cCccC--cccccccccccccccccc----ccCccC-CCCCccCeeeccCCcc
Q 036466 637 TLAIGDCPNFMA----LPGSL--KDLEALENLVIGICPKLS----SLPEGM-HHLTTLKTLAIEECPA 693 (727)
Q Consensus 637 ~L~L~~~~~~~~----~~~~l--~~l~~L~~L~l~~~~~~~----~l~~~l-~~l~~L~~L~l~~c~~ 693 (727)
+|+|++|.+... ++..+ ..+++|++|+|++|.+.. .+|..+ .++++|+.|++++|+.
T Consensus 248 ~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 248 ELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315 (386)
T ss_dssp EEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred EEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcC
Confidence 777777765443 34444 236777777777776555 366555 4567777777777653
No 84
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.69 E-value=1.6e-15 Score=163.10 Aligned_cols=225 Identities=25% Similarity=0.241 Sum_probs=131.0
Q ss_pred CcceEEEecCCCccccccccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcccccCceeEec
Q 036466 430 KSLRVLVLTNSAIEVLPRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVT 509 (727)
Q Consensus 430 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 509 (727)
++|++|++++|.+..+| .+..+++|++|++++|.+. .+|..+ .+|++|++++|...+ +| .++.+++|+.|+++
T Consensus 131 ~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~-~lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~ 203 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLK-KLPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYAD 203 (454)
T ss_dssp TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCS-CCCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECC
T ss_pred CCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCc-ccCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECC
Confidence 46777777777766666 4666777777777776633 355432 467777777654433 55 46677777777777
Q ss_pred ccccccccccCCCCCCCcEEeccccCCchhhhhhccCCCCcCeeecccCcCCCcCccccccCcccceeeccccccccccc
Q 036466 510 TKQKSLLESGIGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNACPRLNLLPPAMKYLSSLERLIFDECESLSLSL 589 (727)
Q Consensus 510 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~ 589 (727)
+|.+..+|... ++|++|++++|.. ..+| .+..+++|+.|++++|... .+|.. +++|+.|++++|....
T Consensus 204 ~N~l~~l~~~~---~~L~~L~l~~n~l-~~lp-~~~~l~~L~~L~l~~N~l~-~l~~~---~~~L~~L~l~~N~l~~--- 271 (454)
T 1jl5_A 204 NNSLKKLPDLP---LSLESIVAGNNIL-EELP-ELQNLPFLTTIYADNNLLK-TLPDL---PPSLEALNVRDNYLTD--- 271 (454)
T ss_dssp SSCCSSCCCCC---TTCCEEECCSSCC-SSCC-CCTTCTTCCEEECCSSCCS-SCCSC---CTTCCEEECCSSCCSC---
T ss_pred CCcCCcCCCCc---CcccEEECcCCcC-Cccc-ccCCCCCCCEEECCCCcCC-ccccc---ccccCEEECCCCcccc---
Confidence 77766554322 4677777777643 3555 3667777777777776553 34432 3567777777663221
Q ss_pred cccccccCCCCCCCCCCceeeEEEecCCCCCC--Ccchhhh-----------cCCC-CcccEEEecCCCCccccCccCcc
Q 036466 590 NMEMKEEGSHHDRKNVGSHLRTLYVARLTPLL--ELPQWLL-----------QGSS-KTLQTLAIGDCPNFMALPGSLKD 655 (727)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~--~l~~~~~-----------~~~~-~~L~~L~L~~~~~~~~~~~~l~~ 655 (727)
++. ..++|+.|++++|.... .++..+. ...+ ++|++|++++|.+.+ +|..
T Consensus 272 ---------l~~---~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~--- 335 (454)
T 1jl5_A 272 ---------LPE---LPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL--- 335 (454)
T ss_dssp ---------CCC---CCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---
T ss_pred ---------cCc---ccCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---
Confidence 111 12456666666654322 1110000 0112 366677776665433 4442
Q ss_pred ccccccccccccccccccCccCCCCCccCeeeccCCcc
Q 036466 656 LEALENLVIGICPKLSSLPEGMHHLTTLKTLAIEECPA 693 (727)
Q Consensus 656 l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~c~~ 693 (727)
+++|+.|++++|... .+|. .+++|+.|++++|+.
T Consensus 336 ~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l 369 (454)
T 1jl5_A 336 PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPL 369 (454)
T ss_dssp CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCC
T ss_pred CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCC
Confidence 467777888777543 5665 467888888887764
No 85
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.69 E-value=6.7e-16 Score=164.94 Aligned_cols=312 Identities=13% Similarity=0.024 Sum_probs=184.3
Q ss_pred CCCCCceeecchhHHHHHHHH-hcCCCCCCCCeEEEEE--EcCCCCcHHHHHHHHhcchhhHh---cCC-ceEEEEecCC
Q 036466 45 FVRPSDIIGRYEDGEKIIELL-TQTSDGESETVSVIPI--VGIGGLGKTALAKLLYNDQRVEE---HFE-LKIWICVSED 117 (727)
Q Consensus 45 ~~~~~~~vGr~~~~~~l~~~l-~~~~~~~~~~~~~v~i--~G~~GiGKTtLa~~~~~~~~~~~---~f~-~~~~~~~~~~ 117 (727)
...|..|+||+++++.|.+++ .....+.....+.++| +|++|+||||||+++++...... .++ .++|+++...
T Consensus 18 ~~~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (412)
T 1w5s_A 18 NYIPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNA 97 (412)
T ss_dssp TCCCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGC
T ss_pred ccCCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCC
Confidence 344578999999999999998 5321110023457777 99999999999999998432211 122 3568888777
Q ss_pred CCHHHHHHHHHHHhcCCCC-CCCChHHHHHHHHHHhC--CceEEEEEcCCCCCC------hhhHHHHHHhhcCC---C--
Q 036466 118 SGKRQIMTKIINSVTGGNH-GNLDPDRLQKVLRDSLN--GKRYLLVMDDVWNED------PRAWGELKSLLLGG---A-- 183 (727)
Q Consensus 118 ~~~~~~~~~ll~~l~~~~~-~~~~~~~~~~~l~~~l~--~~~~LlvlDd~~~~~------~~~~~~~~~~l~~~---~-- 183 (727)
.+...++..++.+++.... ...+...+...+.+.+. +++++|||||+|+.. ...+..+...+... .
T Consensus 98 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~ 177 (412)
T 1w5s_A 98 PNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGV 177 (412)
T ss_dssp CSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSC
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCC
Confidence 7888999999999864422 23345566667766664 679999999997642 22333333333221 2
Q ss_pred CCCEEEEecCchHHHHHHh------hcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcC------
Q 036466 184 EGSKILVTTRSNKVALIMA------TMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCR------ 251 (727)
Q Consensus 184 ~~~~iliTsr~~~~~~~~~------~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~------ 251 (727)
....+|+||+...+..... .......+.+++++.+++.++|...+...... .....+.+..+++.++
T Consensus 178 ~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~ 256 (412)
T 1w5s_A 178 NRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRD-TVWEPRHLELISDVYGEDKGGD 256 (412)
T ss_dssp CBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCT-TSCCHHHHHHHHHHHCGGGTSC
T ss_pred ceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCC-CCCChHHHHHHHHHHHHhccCC
Confidence 3455887887655432221 01112339999999999999997654321111 1123466788999999
Q ss_pred CchHHHHHHHhhhc-----CCC---ChhhHHHHHhccccccccCCCChhHHHHHhhhcCChhHHHHHhHhccCC--CCCc
Q 036466 252 GIPLAVRTVGSLLY-----GST---DEHDWEYVRDNDIWKLRQAPDDILPALRLSYDQLPPHLKQCFAYCSIFP--KDYE 321 (727)
Q Consensus 252 g~Plal~~~a~~l~-----~~~---~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~~~la~f~--~~~~ 321 (727)
|+|..+..++.... ... ....+........ . ...+...+..|++..+.++..++.+. ....
T Consensus 257 G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~----~-----~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~ 327 (412)
T 1w5s_A 257 GSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENE----A-----ASIQTHELEALSIHELIILRLIAEATLGGMEW 327 (412)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC---------------CCSSSSSCHHHHHHHHHHHHHHHTTCSS
T ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh----c-----cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCC
Confidence 99976665543321 111 1111111111000 0 22334456789999999999888753 2334
Q ss_pred cChHHHHHHHHhcccccCCCCCchHHHHHHHHHHHHHhCCcceecC
Q 036466 322 FASVHLVQLWMAHGLLQSPNKNEELENIGMRYFKELCSRSFFQDLG 367 (727)
Q Consensus 322 ~~~~~l~~~w~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~ 367 (727)
+....+...+..... ...+...........+++.|.+.++|....
T Consensus 328 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~L~~~gli~~~~ 372 (412)
T 1w5s_A 328 INAGLLRQRYEDASL-TMYNVKPRGYTQYHIYLKHLTSLGLVDAKP 372 (412)
T ss_dssp BCHHHHHHHHHHHHH-HHSCCCCCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred ccHHHHHHHHHHHHH-hhcCCCCCCHHHHHHHHHHHHhCCCEEeec
Confidence 544444433321100 000001111344667899999999998754
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.68 E-value=1.6e-16 Score=155.93 Aligned_cols=197 Identities=14% Similarity=0.166 Sum_probs=102.5
Q ss_pred cCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccC-hhhcccccCceeEecc-ccccccc-ccCCCCCCCcEEe
Q 036466 454 QLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELP-KDIRYLVSLRMFVVTT-KQKSLLE-SGIGCLSSLRFLM 530 (727)
Q Consensus 454 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~-~~~~~~~-~~~~~l~~L~~L~ 530 (727)
+|++|++++|.+.+..+..+..+++|++|++++|..+..++ ..+..+++|++|++++ |.+..++ ..+..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 56666666655332222345556666666666554233332 3455555566666555 5555333 2344555555555
Q ss_pred ccccCCchhhhhhccCCCCcC---eeecccCcCCCcCc-cccccCcccceeeccccccccccccccccccCCCCCCCCCC
Q 036466 531 ISNCGNLEYLFEDIDQLSVLR---SLVVNACPRLNLLP-PAMKYLSSLERLIFDECESLSLSLNMEMKEEGSHHDRKNVG 606 (727)
Q Consensus 531 l~~~~~~~~l~~~l~~l~~L~---~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~ 606 (727)
+++|.. ..+|. +..+++|+ .|++++|..++.++ ..+..+
T Consensus 112 l~~n~l-~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l----------------------------------- 154 (239)
T 2xwt_C 112 IFNTGL-KMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGL----------------------------------- 154 (239)
T ss_dssp EEEECC-CSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTT-----------------------------------
T ss_pred CCCCCC-ccccc-cccccccccccEEECCCCcchhhcCcccccch-----------------------------------
Confidence 555432 22333 44444444 55555542222222 223334
Q ss_pred ceee-EEEecCCCCCCCcchhhhcCCCCcccEEEecCCC-CccccCccCccc-cccccccccccccccccCccCCCCCcc
Q 036466 607 SHLR-TLYVARLTPLLELPQWLLQGSSKTLQTLAIGDCP-NFMALPGSLKDL-EALENLVIGICPKLSSLPEGMHHLTTL 683 (727)
Q Consensus 607 ~~L~-~L~L~~~~~~~~l~~~~~~~~~~~L~~L~L~~~~-~~~~~~~~l~~l-~~L~~L~l~~~~~~~~l~~~l~~l~~L 683 (727)
++|+ .|++++|.. ..++... ...++|++|++++|. +.+..+..+..+ ++|+.|++++|.+ ..+|.. .+++|
T Consensus 155 ~~L~~~L~l~~n~l-~~i~~~~--~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l-~~l~~~--~~~~L 228 (239)
T 2xwt_C 155 CNETLTLKLYNNGF-TSVQGYA--FNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV-TALPSK--GLEHL 228 (239)
T ss_dssp BSSEEEEECCSCCC-CEECTTT--TTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCC-CCCCCT--TCTTC
T ss_pred hcceeEEEcCCCCC-cccCHhh--cCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcc-ccCChh--HhccC
Confidence 4444 445544432 2444333 122678888887774 433334556777 8888888888764 355543 67888
Q ss_pred CeeeccCCcc
Q 036466 684 KTLAIEECPA 693 (727)
Q Consensus 684 ~~L~l~~c~~ 693 (727)
+.|++.+|..
T Consensus 229 ~~L~l~~~~~ 238 (239)
T 2xwt_C 229 KELIARNTWT 238 (239)
T ss_dssp SEEECTTC--
T ss_pred ceeeccCccC
Confidence 8888887764
No 87
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.68 E-value=3.3e-16 Score=159.59 Aligned_cols=146 Identities=21% Similarity=0.250 Sum_probs=106.9
Q ss_pred cCCCcceEEEecCCCccccccccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcccccCcee
Q 036466 427 SKSKSLRVLVLTNSAIEVLPRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMF 506 (727)
Q Consensus 427 ~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 506 (727)
..+++|+.|+++++.+..++ .+..+++|++|++++|. +..++. +..+++|++|++++|... .++ .+..+++|++|
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~-i~~~~~-~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L 112 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQ-ITDLAP-LKNLTKITELELSGNPLK-NVS-AIAGLQSIKTL 112 (308)
T ss_dssp HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCCSCCEEECCSCCCS-CCG-GGTTCTTCCEE
T ss_pred HHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCc-CCCChh-HccCCCCCEEEccCCcCC-Cch-hhcCCCCCCEE
Confidence 35678889999998888776 57888899999998887 444555 788888999999887643 344 57788888888
Q ss_pred EecccccccccccCCCCCCCcEEeccccCCchhhhhhccCCCCcCeeecccCcCCCcCccccccCcccceeecccc
Q 036466 507 VVTTKQKSLLESGIGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNACPRLNLLPPAMKYLSSLERLIFDEC 582 (727)
Q Consensus 507 ~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 582 (727)
++++|.+..++. +..+++|++|++++|.. ..++. +..+++|+.|++++|... .++. +..+++|+.|++++|
T Consensus 113 ~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l-~~~~~-l~~l~~L~~L~l~~n~l~-~~~~-l~~l~~L~~L~l~~n 183 (308)
T 1h6u_A 113 DLTSTQITDVTP-LAGLSNLQVLYLDLNQI-TNISP-LAGLTNLQYLSIGNAQVS-DLTP-LANLSKLTTLKADDN 183 (308)
T ss_dssp ECTTSCCCCCGG-GTTCTTCCEEECCSSCC-CCCGG-GGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSS
T ss_pred ECCCCCCCCchh-hcCCCCCCEEECCCCcc-CcCcc-ccCCCCccEEEccCCcCC-CChh-hcCCCCCCEEECCCC
Confidence 888888876654 77788888888888643 33333 677788888888877653 3333 566667777776665
No 88
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.67 E-value=2.2e-16 Score=158.00 Aligned_cols=206 Identities=17% Similarity=0.096 Sum_probs=159.3
Q ss_pred CCeeEEEeccCCCcchhhhhhhhhcCCCcceEEEecCCCccccccccCCCCcCcEEeccCCccccccCccccCCCCCCEe
Q 036466 403 GRVRTILFPIDDERTSQSFVTSCISKSKSLRVLVLTNSAIEVLPRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTL 482 (727)
Q Consensus 403 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 482 (727)
..++.+.+...... . ...+..+++|++|++++|.+..++ .+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus 41 ~~L~~L~l~~~~i~----~-~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 41 NSIDQIIANNSDIK----S-VQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp TTCCEEECTTSCCC----C-CTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred cceeeeeeCCCCcc----c-ccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 45666666432211 1 124778999999999999998764 68899999999999998665555567899999999
Q ss_pred ecCCCCCCcccChhhcccccCceeEeccccccccccc-CCCCCCCcEEeccccCCchhhhhhccCCCCcCeeecccCcCC
Q 036466 483 NLGDCLELEELPKDIRYLVSLRMFVVTTKQKSLLESG-IGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNACPRL 561 (727)
Q Consensus 483 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~ 561 (727)
++++|......+..+..+++|++|++++|.++.++.. +..+++|++|++++|......+..+..+++|+.|++++|...
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence 9999887766666789999999999999999966654 688999999999998655444455789999999999999876
Q ss_pred CcCccccccCcccceeeccccccccccccccccccCCCCCCCCCCceeeEEEecCCCCCCCcchhhhcCCCCcccEEEec
Q 036466 562 NLLPPAMKYLSSLERLIFDECESLSLSLNMEMKEEGSHHDRKNVGSHLRTLYVARLTPLLELPQWLLQGSSKTLQTLAIG 641 (727)
Q Consensus 562 ~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~~~L~~L~L~ 641 (727)
+..+..+..+++|+.|++++|+. . +.+++|+.|+++
T Consensus 195 ~~~~~~~~~l~~L~~L~l~~N~~-----------------------------------~---------~~~~~l~~l~~~ 230 (272)
T 3rfs_A 195 SVPDGVFDRLTSLQYIWLHDNPW-----------------------------------D---------CTCPGIRYLSEW 230 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCB-----------------------------------C---------CCTTTTHHHHHH
T ss_pred ccCHHHHhCCcCCCEEEccCCCc-----------------------------------c---------ccCcHHHHHHHH
Confidence 65555567777777777766421 1 346778888888
Q ss_pred CCCCccccCccCccccc
Q 036466 642 DCPNFMALPGSLKDLEA 658 (727)
Q Consensus 642 ~~~~~~~~~~~l~~l~~ 658 (727)
.|.+.+.+|..++.++.
T Consensus 231 ~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 231 INKHSGVVRNSAGSVAP 247 (272)
T ss_dssp HHHTGGGBBCTTSCBCG
T ss_pred HHhCCCcccCcccccCC
Confidence 88888888877766654
No 89
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.67 E-value=2.4e-15 Score=157.29 Aligned_cols=292 Identities=11% Similarity=0.106 Sum_probs=174.1
Q ss_pred CCCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCC-----CCH
Q 036466 46 VRPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSED-----SGK 120 (727)
Q Consensus 46 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~-----~~~ 120 (727)
..+..|+||+++++.|.+ +.. ++++|+|++|+|||+|+++++.. ... ..+|+++... .+.
T Consensus 10 ~~~~~~~gR~~el~~L~~-l~~---------~~v~i~G~~G~GKT~L~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~ 74 (357)
T 2fna_A 10 DNRKDFFDREKEIEKLKG-LRA---------PITLVLGLRRTGKSSIIKIGINE--LNL---PYIYLDLRKFEERNYISY 74 (357)
T ss_dssp CSGGGSCCCHHHHHHHHH-TCS---------SEEEEEESTTSSHHHHHHHHHHH--HTC---CEEEEEGGGGTTCSCCCH
T ss_pred CCHHHhcChHHHHHHHHH-hcC---------CcEEEECCCCCCHHHHHHHHHHh--cCC---CEEEEEchhhccccCCCH
Confidence 345679999999999999 632 48999999999999999999873 222 2578887643 344
Q ss_pred HHHHHHHHHHhc-------------CC-------C----C-----CCCChHHHHHHHHHHhCCceEEEEEcCCCCCCh--
Q 036466 121 RQIMTKIINSVT-------------GG-------N----H-----GNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDP-- 169 (727)
Q Consensus 121 ~~~~~~ll~~l~-------------~~-------~----~-----~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~-- 169 (727)
......+...+. .. . . .......+.+.+.+..+ ++++|||||+++.+.
T Consensus 75 ~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~ 153 (357)
T 2fna_A 75 KDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLR 153 (357)
T ss_dssp HHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCT
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccC
Confidence 444444443331 00 0 0 12234455555544322 499999999987532
Q ss_pred -hhHHHHHHhhcCCCCCCEEEEecCchHHHHHH----h----hcCC-CCceecCCCChhhHHHHHHHhhccCCCCCChhH
Q 036466 170 -RAWGELKSLLLGGAEGSKILVTTRSNKVALIM----A----TMRG-TTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNL 239 (727)
Q Consensus 170 -~~~~~~~~~l~~~~~~~~iliTsr~~~~~~~~----~----~~~~-~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~ 239 (727)
.++..+...+....++.++|+|++........ . ..+. ...+.+.+|+.+|+.+++...+...+.....
T Consensus 154 ~~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~-- 231 (357)
T 2fna_A 154 GVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD-- 231 (357)
T ss_dssp TCCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC--
T ss_pred chhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc--
Confidence 23333333333223467899999976532221 1 1111 2578999999999999998755322222211
Q ss_pred HHHHHHHHHHcCCchHHHHHHHhhhcCCCChhhHHHHHhccccccccCCCChhHHHHHhhh-------cCChhHHHHHhH
Q 036466 240 VKIGEKIVEKCRGIPLAVRTVGSLLYGSTDEHDWEYVRDNDIWKLRQAPDDILPALRLSYD-------QLPPHLKQCFAY 312 (727)
Q Consensus 240 ~~~~~~i~~~~~g~Plal~~~a~~l~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~L~~~~~~~~~~ 312 (727)
..++++.++|+|+++..++..+........|- .+ . .+.....+...+. .+++..+.++..
T Consensus 232 ---~~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~--~~-~-------~~~~~~~~~~~l~~~~~~~~~l~~~~~~~l~~ 298 (357)
T 2fna_A 232 ---YEVVYEKIGGIPGWLTYFGFIYLDNKNLDFAI--NQ-T-------LEYAKKLILKEFENFLHGREIARKRYLNIMRT 298 (357)
T ss_dssp ---HHHHHHHHCSCHHHHHHHHHHHHHHCCHHHHH--HH-H-------HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred ---HHHHHHHhCCCHHHHHHHHHHHccccchHHHH--HH-H-------HHHHHHHHHHHHHHHhhccccccHHHHHHHHH
Confidence 27899999999999999987764322222221 10 0 0011111211122 678889999999
Q ss_pred hccCCCCCccChHHHHHHHH-hcccccCCCCCchHHHHHHHHHHHHHhCCcceecCCCCCCCceehhh-HhhHHHHHH
Q 036466 313 CSIFPKDYEFASVHLVQLWM-AHGLLQSPNKNEELENIGMRYFKELCSRSFFQDLGDLLPGLEVFNFQ-IHDLMHDLA 388 (727)
Q Consensus 313 la~f~~~~~~~~~~l~~~w~-~~~~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~~~~~~~-~h~li~~~~ 388 (727)
+|+ .. ....+..... ..|. .........+++.|.+.++|.... + .|+ .|++++++.
T Consensus 299 la~-g~----~~~~l~~~~~~~~g~-------~~~~~~~~~~L~~L~~~gli~~~~--~------~y~f~~~~~~~~l 356 (357)
T 2fna_A 299 LSK-CG----KWSDVKRALELEEGI-------EISDSEIYNYLTQLTKHSWIIKEG--E------KYCPSEPLISLAF 356 (357)
T ss_dssp HTT-CB----CHHHHHHHHHHHHCS-------CCCHHHHHHHHHHHHHTTSEEESS--S------CEEESSHHHHHHT
T ss_pred HHc-CC----CHHHHHHHHHHhcCC-------CCCHHHHHHHHHHHHhCCCEEecC--C------EEEecCHHHHHhh
Confidence 998 21 3333322110 0110 011345678899999999998742 1 244 578888764
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.66 E-value=4.1e-16 Score=159.41 Aligned_cols=221 Identities=13% Similarity=0.111 Sum_probs=129.6
Q ss_pred cceEEEecCCCccc--ccc--ccCCCCcCcEEeccCCccccccCccc--cCCCCCCEeecCCCCCCcccC----hhhccc
Q 036466 431 SLRVLVLTNSAIEV--LPR--KMGNLKQLRHLDLSGNRKIKKLPNSI--CELQSLQTLNLGDCLELEELP----KDIRYL 500 (727)
Q Consensus 431 ~L~~L~l~~~~~~~--l~~--~~~~l~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~----~~l~~l 500 (727)
.++.+.+.++.+.. +.. .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+....+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 45666676666541 111 12234557777777777666666665 677778888887776665433 334467
Q ss_pred ccCceeEeccccccccc-ccCCCCCCCcEEeccccCCchh--hhhh--ccCCCCcCeeecccCcCCCcCcc----ccccC
Q 036466 501 VSLRMFVVTTKQKSLLE-SGIGCLSSLRFLMISNCGNLEY--LFED--IDQLSVLRSLVVNACPRLNLLPP----AMKYL 571 (727)
Q Consensus 501 ~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~--l~~~--l~~l~~L~~L~l~~~~~~~~~~~----~l~~l 571 (727)
++|++|++++|.+...+ ..+..+++|++|++++|..... ++.. +..+++|++|++++|... .++. .+..+
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l 223 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAG 223 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHT
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcC
Confidence 78888888888777444 4667778888888888764432 3222 356788888888887653 3332 23556
Q ss_pred cccceeeccccccccccccccccccCCCCCCCCCCceeeEEEecCCCCCCCcchhhhc-CCCCcccEEEecCCCCccccC
Q 036466 572 SSLERLIFDECESLSLSLNMEMKEEGSHHDRKNVGSHLRTLYVARLTPLLELPQWLLQ-GSSKTLQTLAIGDCPNFMALP 650 (727)
Q Consensus 572 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~-~~~~~L~~L~L~~~~~~~~~~ 650 (727)
++|++|++++|.... ..|..+.. ..+++|++|+|++|.+. .+|
T Consensus 224 ~~L~~L~Ls~N~l~~-----------------------------------~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp 267 (310)
T 4glp_A 224 VQPHSLDLSHNSLRA-----------------------------------TVNPSAPRCMWSSALNSLNLSFAGLE-QVP 267 (310)
T ss_dssp CCCSSEECTTSCCCC-----------------------------------CCCSCCSSCCCCTTCCCEECCSSCCC-SCC
T ss_pred CCCCEEECCCCCCCc-----------------------------------cchhhHHhccCcCcCCEEECCCCCCC-chh
Confidence 777777776653211 11111100 11256666666666543 455
Q ss_pred ccCccccccccccccccccccccCccCCCCCccCeeeccCCc
Q 036466 651 GSLKDLEALENLVIGICPKLSSLPEGMHHLTTLKTLAIEECP 692 (727)
Q Consensus 651 ~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~c~ 692 (727)
..+. ++|+.|++++|.+. .+|. +..+++|+.|++++|+
T Consensus 268 ~~~~--~~L~~L~Ls~N~l~-~~~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 268 KGLP--AKLRVLDLSSNRLN-RAPQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp SCCC--SCCSCEECCSCCCC-SCCC-TTSCCCCSCEECSSTT
T ss_pred hhhc--CCCCEEECCCCcCC-CCch-hhhCCCccEEECcCCC
Confidence 4442 56666666666543 3332 4556677777776665
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.66 E-value=3.8e-16 Score=159.63 Aligned_cols=140 Identities=14% Similarity=0.031 Sum_probs=74.3
Q ss_pred CCcceEEEecCCCcc-cccccc--CCCCcCcEEeccCCccccccC----ccccCCCCCCEeecCCCCCCcccChhhcccc
Q 036466 429 SKSLRVLVLTNSAIE-VLPRKM--GNLKQLRHLDLSGNRKIKKLP----NSICELQSLQTLNLGDCLELEELPKDIRYLV 501 (727)
Q Consensus 429 ~~~L~~L~l~~~~~~-~l~~~~--~~l~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~ 501 (727)
+++|+.|++++|.+. ..|..+ ..+++|++|++++|.+.+..+ ..+..+++|++|++++|......+..+..++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 345666666666655 333444 556666666666665443322 2233456666666666555544555566666
Q ss_pred cCceeEeccccccc---cc--ccCCCCCCCcEEeccccCCchhhhh----hccCCCCcCeeecccCcCCCcCccccc
Q 036466 502 SLRMFVVTTKQKSL---LE--SGIGCLSSLRFLMISNCGNLEYLFE----DIDQLSVLRSLVVNACPRLNLLPPAMK 569 (727)
Q Consensus 502 ~L~~L~l~~~~~~~---~~--~~~~~l~~L~~L~l~~~~~~~~l~~----~l~~l~~L~~L~l~~~~~~~~~~~~l~ 569 (727)
+|++|++++|.+.. .+ ..+..+++|++|++++|.. +.++. .+..+++|+.|++++|......|..+.
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~ 245 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM-ETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAP 245 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC-CCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCS
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC-CchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHH
Confidence 66666666665431 21 1224556666666666533 22221 134556666666666655444444443
No 92
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.65 E-value=9.9e-16 Score=156.08 Aligned_cols=195 Identities=16% Similarity=0.141 Sum_probs=152.6
Q ss_pred cCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcccccCceeEecccccccccccCCCCCCCcE
Q 036466 449 MGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTKQKSLLESGIGCLSSLRF 528 (727)
Q Consensus 449 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~ 528 (727)
...+++|+.|++++|. +..+| .+..+++|++|++++|.... ++. +..+++|++|++++|.+..++ .+..+++|++
T Consensus 37 ~~~l~~L~~L~l~~~~-i~~l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~ 111 (308)
T 1h6u_A 37 QADLDGITTLSAFGTG-VTTIE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKT 111 (308)
T ss_dssp HHHHHTCCEEECTTSC-CCCCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCE
T ss_pred HHHcCCcCEEEeeCCC-ccCch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCE
Confidence 4568899999999997 45566 58899999999999876544 444 899999999999999998765 6888999999
Q ss_pred EeccccCCchhhhhhccCCCCcCeeecccCcCCCcCccccccCcccceeeccccccccccccccccccCCCCCCCCCCce
Q 036466 529 LMISNCGNLEYLFEDIDQLSVLRSLVVNACPRLNLLPPAMKYLSSLERLIFDECESLSLSLNMEMKEEGSHHDRKNVGSH 608 (727)
Q Consensus 529 L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 608 (727)
|++++|.. ..++ .+..+++|+.|++++|... .++. +..+++|+.|++++|..-. ++. +..+++
T Consensus 112 L~l~~n~l-~~~~-~l~~l~~L~~L~l~~n~l~-~~~~-l~~l~~L~~L~l~~n~l~~------------~~~-l~~l~~ 174 (308)
T 1h6u_A 112 LDLTSTQI-TDVT-PLAGLSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVSD------------LTP-LANLSK 174 (308)
T ss_dssp EECTTSCC-CCCG-GGTTCTTCCEEECCSSCCC-CCGG-GGGCTTCCEEECCSSCCCC------------CGG-GTTCTT
T ss_pred EECCCCCC-CCch-hhcCCCCCCEEECCCCccC-cCcc-ccCCCCccEEEccCCcCCC------------Chh-hcCCCC
Confidence 99999764 4444 3889999999999998764 3443 7788999999999874321 122 567789
Q ss_pred eeEEEecCCCCCCCcchhhhcCCCCcccEEEecCCCCccccCccCcccccccccccccccccc
Q 036466 609 LRTLYVARLTPLLELPQWLLQGSSKTLQTLAIGDCPNFMALPGSLKDLEALENLVIGICPKLS 671 (727)
Q Consensus 609 L~~L~L~~~~~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 671 (727)
|+.|+|++|... .++. + ..+++|++|+|++|.+.+ ++. +..+++|+.|++++|+...
T Consensus 175 L~~L~l~~n~l~-~~~~-l--~~l~~L~~L~L~~N~l~~-~~~-l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 175 LTTLKADDNKIS-DISP-L--ASLPNLIEVHLKNNQISD-VSP-LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCEEECCSSCCC-CCGG-G--GGCTTCCEEECTTSCCCB-CGG-GTTCTTCCEEEEEEEEEEC
T ss_pred CCEEECCCCccC-cChh-h--cCCCCCCEEEccCCccCc-ccc-ccCCCCCCEEEccCCeeec
Confidence 999999998554 4443 3 568899999999987654 443 7889999999999987643
No 93
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.64 E-value=8.8e-17 Score=168.20 Aligned_cols=245 Identities=15% Similarity=0.044 Sum_probs=157.3
Q ss_pred hhhhhhcCCCcceEEEecCCCccccc-----cccCCCC-cCcEEeccCCccccccCccccCC-----CCCCEeecCCCCC
Q 036466 421 FVTSCISKSKSLRVLVLTNSAIEVLP-----RKMGNLK-QLRHLDLSGNRKIKKLPNSICEL-----QSLQTLNLGDCLE 489 (727)
Q Consensus 421 ~~~~~~~~~~~L~~L~l~~~~~~~l~-----~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~ 489 (727)
..+..+...++|+.|++++|.+...+ ..+..++ +|++|++++|.+.+..+..+..+ ++|++|++++|..
T Consensus 13 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 92 (362)
T 3goz_A 13 PVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFL 92 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG
T ss_pred HHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcC
Confidence 45556666777999999999988665 4567787 89999999998665555555553 8999999999876
Q ss_pred CcccChhh----ccc-ccCceeEecccccccccc-----cCCC-CCCCcEEeccccCCc----hhhhhhccCCC-CcCee
Q 036466 490 LEELPKDI----RYL-VSLRMFVVTTKQKSLLES-----GIGC-LSSLRFLMISNCGNL----EYLFEDIDQLS-VLRSL 553 (727)
Q Consensus 490 ~~~~~~~l----~~l-~~L~~L~l~~~~~~~~~~-----~~~~-l~~L~~L~l~~~~~~----~~l~~~l~~l~-~L~~L 553 (727)
....+..+ ..+ ++|+.|++++|.++..+. .+.. .++|++|++++|... ..++..+..++ +|+.|
T Consensus 93 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L 172 (362)
T 3goz_A 93 SYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSL 172 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEE
T ss_pred ChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEe
Confidence 65555544 334 799999999999884332 2344 368999999987543 24556666665 89999
Q ss_pred ecccCcCCCcCcc----ccccC-cccceeeccccccccccccccccccCCCCCCCCC-CceeeEEEecCCCCCCCcchhh
Q 036466 554 VVNACPRLNLLPP----AMKYL-SSLERLIFDECESLSLSLNMEMKEEGSHHDRKNV-GSHLRTLYVARLTPLLELPQWL 627 (727)
Q Consensus 554 ~l~~~~~~~~~~~----~l~~l-~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~L~~L~L~~~~~~~~l~~~~ 627 (727)
++++|......+. .+..+ ++|++|++++|..-... ...++..+.. +++|+.|+|++|.....-...+
T Consensus 173 ~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~-------~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l 245 (362)
T 3goz_A 173 NLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKS-------YAELAYIFSSIPNHVVSLNLCLNCLHGPSLENL 245 (362)
T ss_dssp ECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC-------HHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHH
T ss_pred eecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhH-------HHHHHHHHhcCCCCceEEECcCCCCCcHHHHHH
Confidence 9999876544443 33344 48888888887422100 0001111112 3467777777775433322111
Q ss_pred --hcCCCCcccEEEecCCCCc-------cccCccCccccccccccccccccccc
Q 036466 628 --LQGSSKTLQTLAIGDCPNF-------MALPGSLKDLEALENLVIGICPKLSS 672 (727)
Q Consensus 628 --~~~~~~~L~~L~L~~~~~~-------~~~~~~l~~l~~L~~L~l~~~~~~~~ 672 (727)
....+++|+.|+|++|.+. ..++..+..+++|+.|++++|.....
T Consensus 246 ~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 246 KLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 1145667777777777521 12344556677777777777765444
No 94
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.64 E-value=4.1e-15 Score=154.67 Aligned_cols=238 Identities=18% Similarity=0.202 Sum_probs=141.3
Q ss_pred eEEEecCCCccccccccCCCCcCcEEeccCCccccccCc-cccCCCCCCEeecCCCCCCcccCh-hhcccccCce-eEec
Q 036466 433 RVLVLTNSAIEVLPRKMGNLKQLRHLDLSGNRKIKKLPN-SICELQSLQTLNLGDCLELEELPK-DIRYLVSLRM-FVVT 509 (727)
Q Consensus 433 ~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~-L~l~ 509 (727)
++++.+++.++.+|..+. +++++|++++|. ++.+|+ .|.++++|++|+|++|.+.+.+|. .|.++++|.. +.+.
T Consensus 12 ~~v~C~~~~Lt~iP~~l~--~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLP--RNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCSCCTTCC--TTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCccCcCcC--CCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 456667777776666552 567777777766 444543 466777777777777666555543 4566666554 4445
Q ss_pred ccccccc-cccCCCCCCCcEEeccccCCchhhhhhccCCCCcCeeecccCcCCCcCcc-ccccCc-ccceeecccccccc
Q 036466 510 TKQKSLL-ESGIGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNACPRLNLLPP-AMKYLS-SLERLIFDECESLS 586 (727)
Q Consensus 510 ~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~-~l~~l~-~L~~L~l~~~~~l~ 586 (727)
+|.+..+ +..+..+++|++|++++|......+..+....++..|++.++..+..++. .+..+. .++.|++++|..-
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~- 167 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ- 167 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-
Confidence 5666644 34566677777777777643322222333445566666665554444442 333333 4666777665321
Q ss_pred ccccccccccCCCCCCCCCCceeeEEEecCCCCCCCcchhhhcCCCCcccEEEecCCCCccccCccCccccccccccccc
Q 036466 587 LSLNMEMKEEGSHHDRKNVGSHLRTLYVARLTPLLELPQWLLQGSSKTLQTLAIGDCPNFMALPGSLKDLEALENLVIGI 666 (727)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~ 666 (727)
.++.......+|+.|++.++..+..++...+ ..+++|+.|+|++|. ++.+|. ..+.+|+.|.+.+
T Consensus 168 -----------~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f-~~l~~L~~LdLs~N~-l~~lp~--~~~~~L~~L~~l~ 232 (350)
T 4ay9_X 168 -----------EIHNSAFNGTQLDELNLSDNNNLEELPNDVF-HGASGPVILDISRTR-IHSLPS--YGLENLKKLRARS 232 (350)
T ss_dssp -----------EECTTSSTTEEEEEEECTTCTTCCCCCTTTT-TTEECCSEEECTTSC-CCCCCS--SSCTTCCEEECTT
T ss_pred -----------CCChhhccccchhHHhhccCCcccCCCHHHh-ccCcccchhhcCCCC-cCccCh--hhhccchHhhhcc
Confidence 2234444556778888877767777765432 457788888888775 344543 2344555555555
Q ss_pred cccccccCccCCCCCccCeeeccC
Q 036466 667 CPKLSSLPEGMHHLTTLKTLAIEE 690 (727)
Q Consensus 667 ~~~~~~l~~~l~~l~~L~~L~l~~ 690 (727)
|..++.+|. +..+++|+.+++.+
T Consensus 233 ~~~l~~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 233 TYNLKKLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp CTTCCCCCC-TTTCCSCCEEECSC
T ss_pred CCCcCcCCC-chhCcChhhCcCCC
Confidence 566677764 66778888887754
No 95
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.63 E-value=1.1e-16 Score=179.73 Aligned_cols=269 Identities=12% Similarity=-0.010 Sum_probs=144.2
Q ss_pred hhhhhhcCCCcceEEEecCCCccccccccCCCCcCcEEeccCCccc---cccCccccCCCCCCEeecCCCCCCcccChhh
Q 036466 421 FVTSCISKSKSLRVLVLTNSAIEVLPRKMGNLKQLRHLDLSGNRKI---KKLPNSICELQSLQTLNLGDCLELEELPKDI 497 (727)
Q Consensus 421 ~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~---~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l 497 (727)
.++..+.++++|+.|++++|.+..++..+..+++|+.|+++.+... ...+..+..+++|+.|+++++ ....+|..+
T Consensus 211 ~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~ 289 (592)
T 3ogk_B 211 DLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILF 289 (592)
T ss_dssp HHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGG
T ss_pred HHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHH
Confidence 3444555667777777777666665555555666666666532211 112233444555555555542 233455556
Q ss_pred cccccCceeEecccccc--cccccCCCCCCCcEEeccccCCchhhhhhccCCCCcCeeeccc----------CcCCCc--
Q 036466 498 RYLVSLRMFVVTTKQKS--LLESGIGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNA----------CPRLNL-- 563 (727)
Q Consensus 498 ~~l~~L~~L~l~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~----------~~~~~~-- 563 (727)
..+++|++|++++|.++ .++..+..+++|++|++.++-....++.....+++|+.|++++ |..++.
T Consensus 290 ~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~ 369 (592)
T 3ogk_B 290 PFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRG 369 (592)
T ss_dssp GGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHH
T ss_pred hhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHH
Confidence 66666777777666654 2222345566666666653322222333334556666666663 332221
Q ss_pred CccccccCcccceeecccccccccccccc------------------ccccC------CCCCCCCCCceeeEEEecCCCC
Q 036466 564 LPPAMKYLSSLERLIFDECESLSLSLNME------------------MKEEG------SHHDRKNVGSHLRTLYVARLTP 619 (727)
Q Consensus 564 ~~~~l~~l~~L~~L~l~~~~~l~~~~~~~------------------~~~~~------~~~~~~~~~~~L~~L~L~~~~~ 619 (727)
++.....+++|++|+++ |..++...... .+... ++...+..+++|+.|+|+.|..
T Consensus 370 ~~~l~~~~~~L~~L~l~-~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~ 448 (592)
T 3ogk_B 370 LIALAQGCQELEYMAVY-VSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQG 448 (592)
T ss_dssp HHHHHHHCTTCSEEEEE-ESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGG
T ss_pred HHHHHhhCccCeEEEee-cCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCC
Confidence 11222334555555552 21111100000 00000 0111234577888888876542
Q ss_pred -CC-CcchhhhcCCCCcccEEEecCCCCcc-ccCccCccccccccccccccccccc-cCccCCCCCccCeeeccCCc
Q 036466 620 -LL-ELPQWLLQGSSKTLQTLAIGDCPNFM-ALPGSLKDLEALENLVIGICPKLSS-LPEGMHHLTTLKTLAIEECP 692 (727)
Q Consensus 620 -~~-~l~~~~~~~~~~~L~~L~L~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~-l~~~l~~l~~L~~L~l~~c~ 692 (727)
.+ .....+ ...+++|+.|+|++|.+.+ .++..+..+++|++|++++|.+... ++.....+++|+.|++++|+
T Consensus 449 ~l~~~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 449 GLTDLGLSYI-GQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp GCCHHHHHHH-HHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred CccHHHHHHH-HHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence 22 222222 2457889999999887654 3455557889999999999985433 44445578999999999998
No 96
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.63 E-value=2.5e-15 Score=147.29 Aligned_cols=198 Identities=15% Similarity=0.163 Sum_probs=144.4
Q ss_pred CcceEEEecCCCcccccc-ccCCCCcCcEEeccCCccccccC-ccccCCCCCCEeecCC-CCCCcccChhhcccccCcee
Q 036466 430 KSLRVLVLTNSAIEVLPR-KMGNLKQLRHLDLSGNRKIKKLP-NSICELQSLQTLNLGD-CLELEELPKDIRYLVSLRMF 506 (727)
Q Consensus 430 ~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L 506 (727)
++|+.|++++|.+..++. .+..+++|++|++++|..++.++ ..+..+++|++|++++ |......+..+..+++|+.|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 489999999999998876 68899999999999997455555 4788999999999998 55544445678999999999
Q ss_pred EecccccccccccCCCCCCCc---EEeccccCCchhhhh-hccCCCCcC-eeecccCcCCCcCccccccCcccceeeccc
Q 036466 507 VVTTKQKSLLESGIGCLSSLR---FLMISNCGNLEYLFE-DIDQLSVLR-SLVVNACPRLNLLPPAMKYLSSLERLIFDE 581 (727)
Q Consensus 507 ~l~~~~~~~~~~~~~~l~~L~---~L~l~~~~~~~~l~~-~l~~l~~L~-~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 581 (727)
++++|.++.+|. +..+++|+ +|++++|..+..++. .+..+++|+ .|++++|... .+|......++|+
T Consensus 111 ~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~------ 182 (239)
T 2xwt_C 111 GIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLD------ 182 (239)
T ss_dssp EEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEE------
T ss_pred eCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCC------
Confidence 999999998876 88888888 999999845565654 588999999 9999988654 4443322224444
Q ss_pred cccccccccccccccCCCCCCCCCCceeeEEEecCCCCCCCcchhhhcCCC-CcccEEEecCCCCccccCccCccccccc
Q 036466 582 CESLSLSLNMEMKEEGSHHDRKNVGSHLRTLYVARLTPLLELPQWLLQGSS-KTLQTLAIGDCPNFMALPGSLKDLEALE 660 (727)
Q Consensus 582 ~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~-~~L~~L~L~~~~~~~~~~~~l~~l~~L~ 660 (727)
.|+|++|..+..++.... ..+ ++|+.|++++|.+. .+|.. .+++|+
T Consensus 183 -----------------------------~L~L~~n~~l~~i~~~~~-~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~ 229 (239)
T 2xwt_C 183 -----------------------------AVYLNKNKYLTVIDKDAF-GGVYSGPSLLDVSQTSVT-ALPSK--GLEHLK 229 (239)
T ss_dssp -----------------------------EEECTTCTTCCEECTTTT-TTCSBCCSEEECTTCCCC-CCCCT--TCTTCS
T ss_pred -----------------------------EEEcCCCCCcccCCHHHh-hccccCCcEEECCCCccc-cCChh--HhccCc
Confidence 455555432333332221 345 77788888776543 45542 667777
Q ss_pred cccccccc
Q 036466 661 NLVIGICP 668 (727)
Q Consensus 661 ~L~l~~~~ 668 (727)
.|++++|.
T Consensus 230 ~L~l~~~~ 237 (239)
T 2xwt_C 230 ELIARNTW 237 (239)
T ss_dssp EEECTTC-
T ss_pred eeeccCcc
Confidence 77777664
No 97
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.60 E-value=1e-14 Score=144.05 Aligned_cols=177 Identities=15% Similarity=0.087 Sum_probs=98.8
Q ss_pred CCCEeecCCCCCCcccChhhcccccCceeEeccccccccc-ccCCCCCCCcEEeccccCCchhhhhhccCCCCcCeeecc
Q 036466 478 SLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTKQKSLLE-SGIGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVN 556 (727)
Q Consensus 478 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~ 556 (727)
..++++++++ .+..+|..+. .+|+.|++++|.+..++ ..+..+++|++|++++|......+..+..+++|+.|+++
T Consensus 15 ~~~~l~~~~~-~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGK-SLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTC-CCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCC-CccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 4567777763 3445665543 57788888888777444 356777788888887765544444556777778888777
Q ss_pred cCcCCCcCccccccCcccceeeccccccccccccccccccCCCCCCCCCCceeeEEEecCCCCCCCcchhhhcCCCCccc
Q 036466 557 ACPRLNLLPPAMKYLSSLERLIFDECESLSLSLNMEMKEEGSHHDRKNVGSHLRTLYVARLTPLLELPQWLLQGSSKTLQ 636 (727)
Q Consensus 557 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~~~L~ 636 (727)
+|......+..+..+++|++|++++|..-.. .+..+..+++|+.|+|++|......+..+ ..+++|+
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-----------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~ 158 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSL-----------PSGVFDRLTKLKELRLNTNQLQSIPAGAF--DKLTNLQ 158 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-----------CTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCc-----------ChhHhccCCcccEEECcCCcCCccCHHHc--CcCcCCC
Confidence 7766544445556667777777766522111 01223344555555555553322212122 3445555
Q ss_pred EEEecCCCCccccCccCccccccccccccccccc
Q 036466 637 TLAIGDCPNFMALPGSLKDLEALENLVIGICPKL 670 (727)
Q Consensus 637 ~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 670 (727)
+|+|++|.+.+..+..+..+++|+.|++++|+..
T Consensus 159 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 159 TLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred EEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 5555555444333334455555555555555443
No 98
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.60 E-value=6.1e-17 Score=181.90 Aligned_cols=264 Identities=15% Similarity=0.038 Sum_probs=139.9
Q ss_pred hcCCCcceEEEecCCCcc-----ccccccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCC---cccChhh
Q 036466 426 ISKSKSLRVLVLTNSAIE-----VLPRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLEL---EELPKDI 497 (727)
Q Consensus 426 ~~~~~~L~~L~l~~~~~~-----~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~---~~~~~~l 497 (727)
+..+++|+.|++++|.+. .++..+..+++|+.|++++|. ...+|..+..+++|+.|+++.+... ...+..+
T Consensus 188 ~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 266 (592)
T 3ogk_B 188 AQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNL 266 (592)
T ss_dssp HHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCC
T ss_pred HhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHHHh
Confidence 344455555555544443 122223344555555555544 2224444444555555555432111 1223344
Q ss_pred cccccCceeEecccccccccccCCCCCCCcEEeccccCCch-hhhhhccCCCCcCeeecccCcCCCcCccccccCcccce
Q 036466 498 RYLVSLRMFVVTTKQKSLLESGIGCLSSLRFLMISNCGNLE-YLFEDIDQLSVLRSLVVNACPRLNLLPPAMKYLSSLER 576 (727)
Q Consensus 498 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 576 (727)
..+++|+.|.+..+....++..+..+++|++|++++|.... .+...+..+++|+.|+++++.....++.....+++|++
T Consensus 267 ~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~ 346 (592)
T 3ogk_B 267 VFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKR 346 (592)
T ss_dssp CCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCE
T ss_pred hccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCE
Confidence 55556666665555444555556667788888888876322 23344677788888888743322234444456778888
Q ss_pred eeccc----------ccccccccccc----cccc-------CCCC-----CCCCCCceeeEEEecC---CCCCCCcc---
Q 036466 577 LIFDE----------CESLSLSLNME----MKEE-------GSHH-----DRKNVGSHLRTLYVAR---LTPLLELP--- 624 (727)
Q Consensus 577 L~l~~----------~~~l~~~~~~~----~~~~-------~~~~-----~~~~~~~~L~~L~L~~---~~~~~~l~--- 624 (727)
|++++ |..++...... .... ..+. .....+++|++|+|++ |..++..|
T Consensus 347 L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~ 426 (592)
T 3ogk_B 347 LRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN 426 (592)
T ss_dssp EEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH
T ss_pred EEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHH
Confidence 88884 54443221100 0000 0000 0011255677777763 33444321
Q ss_pred ---hhhhcCCCCcccEEEecCCC--CccccCccC-cccccccccccccccccc-ccCccCCCCCccCeeeccCCc
Q 036466 625 ---QWLLQGSSKTLQTLAIGDCP--NFMALPGSL-KDLEALENLVIGICPKLS-SLPEGMHHLTTLKTLAIEECP 692 (727)
Q Consensus 625 ---~~~~~~~~~~L~~L~L~~~~--~~~~~~~~l-~~l~~L~~L~l~~~~~~~-~l~~~l~~l~~L~~L~l~~c~ 692 (727)
..+ ..+++|++|+|+.|. +....+..+ ..+++|++|++++|...+ .++..+..+++|+.|+|++|+
T Consensus 427 ~~~~~~--~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 427 GVRSLL--IGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC 499 (592)
T ss_dssp HHHHHH--HHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC
T ss_pred HHHHHH--HhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC
Confidence 112 346778888886543 222222222 347889999999887654 345556788999999999998
No 99
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.60 E-value=1.5e-14 Score=142.78 Aligned_cols=151 Identities=17% Similarity=0.126 Sum_probs=113.1
Q ss_pred CcceEEEecCCCccccccccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcccccCceeEec
Q 036466 430 KSLRVLVLTNSAIEVLPRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVT 509 (727)
Q Consensus 430 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 509 (727)
...+.++++++.+..+|..+. .+++.|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|++|+++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 457889999999998887765 689999999998666666678889999999999887777666778888999999999
Q ss_pred cccccccc-ccCCCCCCCcEEeccccCCchhhhhhccCCCCcCeeecccCcCCCcCccccccCcccceeecccc
Q 036466 510 TKQKSLLE-SGIGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNACPRLNLLPPAMKYLSSLERLIFDEC 582 (727)
Q Consensus 510 ~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 582 (727)
+|.++.++ ..+..+++|++|++++|......+..+..+++|+.|++++|......+..+..+++|++|++++|
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 165 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN 165 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCC
Confidence 98888555 34677888888888886443323334677888888888887654433335666666666666654
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.58 E-value=1.5e-14 Score=138.33 Aligned_cols=124 Identities=22% Similarity=0.147 Sum_probs=65.6
Q ss_pred eEEEecCCCccccccccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcccccCceeEecccc
Q 036466 433 RVLVLTNSAIEVLPRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTKQ 512 (727)
Q Consensus 433 ~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 512 (727)
+.++++++.+..+|..+ .++|++|++++|.+.+..+..+..+++|++|++++|......+..+..+++|++|++++|.
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 45666666666666544 3467777777776443333345666777777777655443333445566666666666666
Q ss_pred ccccccc-CCCCCCCcEEeccccCCchhhhhhccCCCCcCeeecccC
Q 036466 513 KSLLESG-IGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNAC 558 (727)
Q Consensus 513 ~~~~~~~-~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~ 558 (727)
++.++.. +..+++|++|++++|......+..+..+++|+.|++++|
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 134 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN 134 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCC
Confidence 5544332 344555555555544322211222344444444444444
No 101
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.57 E-value=6.4e-14 Score=148.31 Aligned_cols=308 Identities=14% Similarity=0.067 Sum_probs=188.9
Q ss_pred CCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhc-CCceEEEEecCCCCHHHHHH
Q 036466 47 RPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEH-FELKIWICVSEDSGKRQIMT 125 (727)
Q Consensus 47 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~ 125 (727)
.|..++||+++++.+..++.....+.....+.++|+|++|+||||+++.++.. .... -..++|+++....+...++.
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~~~~~~~~~~~~~ 92 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYINGFIYRNFTAIIG 92 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEETTTCCSHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEeCccCCCHHHHHH
Confidence 34679999999999999987632221223348999999999999999999873 3332 13466888888778889999
Q ss_pred HHHHHhcCCCC-CCCChHHHHHHHHHHhC--CceEEEEEcCCCCCChhhHHHHHHhhcCCC----CCCEEEEecCchHHH
Q 036466 126 KIINSVTGGNH-GNLDPDRLQKVLRDSLN--GKRYLLVMDDVWNEDPRAWGELKSLLLGGA----EGSKILVTTRSNKVA 198 (727)
Q Consensus 126 ~ll~~l~~~~~-~~~~~~~~~~~l~~~l~--~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~----~~~~iliTsr~~~~~ 198 (727)
.++..++.... ...+..++.+.+...+. +++.+||||+++..+......+...+.... .+..+|++|+.....
T Consensus 93 ~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~ 172 (389)
T 1fnn_A 93 EIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVL 172 (389)
T ss_dssp HHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred HHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHH
Confidence 99988854322 23355666666666554 568999999998887666666666654321 466788887765432
Q ss_pred HHH-----hhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHc---------CCchHHHHHHHhhh
Q 036466 199 LIM-----ATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKC---------RGIPLAVRTVGSLL 264 (727)
Q Consensus 199 ~~~-----~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~---------~g~Plal~~~a~~l 264 (727)
... ... ....+.+++++.++..+++...+...... .....+.+..+++.+ +|.|..+..++...
T Consensus 173 ~~l~~~~~~r~-~~~~i~~~pl~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a 250 (389)
T 1fnn_A 173 NNLDPSTRGIM-GKYVIRFSPYTKDQIFDILLDRAKAGLAE-GSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRS 250 (389)
T ss_dssp HTSCHHHHHHH-TTCEEECCCCBHHHHHHHHHHHHHHHBCT-TSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHH
T ss_pred HHhCHHhhhcC-CCceEEeCCCCHHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHH
Confidence 211 111 11369999999999999998876431111 122346678899999 79886655544332
Q ss_pred cC-----CCChhhHHHHHhccccccccCCCChhHHHHHhhhcCChhHHHHHhHhccCC---CCCccChHHHHHHHHhccc
Q 036466 265 YG-----STDEHDWEYVRDNDIWKLRQAPDDILPALRLSYDQLPPHLKQCFAYCSIFP---KDYEFASVHLVQLWMAHGL 336 (727)
Q Consensus 265 ~~-----~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~~~la~f~---~~~~~~~~~l~~~w~~~~~ 336 (727)
.. ......++.+..... .. . ...+...+..|+++.+.++..++.+. .+..+....+...+...
T Consensus 251 ~~~a~~~~~~~i~~~~v~~~~~-~~---~---~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~-- 321 (389)
T 1fnn_A 251 AYAAQQNGRKHIAPEDVRKSSK-EV---L---FGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIV-- 321 (389)
T ss_dssp HHHHHHTTCSSCCHHHHHHHHH-HH---S---CCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHH--
T ss_pred HHHHHHhCCCCcCHHHHHHHHH-HH---h---hhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHH--
Confidence 11 111111111111000 00 0 11223446778899999888888654 22144444444433221
Q ss_pred ccCCCCCchHHHHHHHHHHHHHhCCcceecC
Q 036466 337 LQSPNKNEELENIGMRYFKELCSRSFFQDLG 367 (727)
Q Consensus 337 ~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~ 367 (727)
....+...-.......++.+|.+.++|....
T Consensus 322 ~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~ 352 (389)
T 1fnn_A 322 CEEYGERPRVHSQLWSYLNDLREKGIVETRQ 352 (389)
T ss_dssp HHHTTCCCCCHHHHHHHHHHHHHTTSSEEEE
T ss_pred HHHcCCCCCCHHHHHHHHHHHHhCCCeEEee
Confidence 0000001112345678899999999998754
No 102
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.56 E-value=1.4e-14 Score=150.50 Aligned_cols=221 Identities=16% Similarity=0.141 Sum_probs=172.2
Q ss_pred CcceEEEecCCCcccccc-ccCCCCcCcEEeccCCccccccCc-cccCCCCCCEee-cCCCCCCcccChhhcccccCcee
Q 036466 430 KSLRVLVLTNSAIEVLPR-KMGNLKQLRHLDLSGNRKIKKLPN-SICELQSLQTLN-LGDCLELEELPKDIRYLVSLRMF 506 (727)
Q Consensus 430 ~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~-l~~~~~~~~~~~~l~~l~~L~~L 506 (727)
++++.|+|++|.+..+|. .|..+++|++|++++|.+.+.+|. .+.++++|.++. +++|......|..+..+++|++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 589999999999999986 589999999999999997776764 577888887654 44444444456788999999999
Q ss_pred Eecccccccccc-cCCCCCCCcEEeccccCCchhhhh-hccCC-CCcCeeecccCcCCCcCccccccCcccceeeccccc
Q 036466 507 VVTTKQKSLLES-GIGCLSSLRFLMISNCGNLEYLFE-DIDQL-SVLRSLVVNACPRLNLLPPAMKYLSSLERLIFDECE 583 (727)
Q Consensus 507 ~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~l~~-~l~~l-~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 583 (727)
++++|.+..++. .+....++..+++.++..+..++. .+..+ ..++.|++++|.. +.++.......+|++|.+.++.
T Consensus 110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i-~~i~~~~f~~~~L~~l~l~~~n 188 (350)
T 4ay9_X 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI-QEIHNSAFNGTQLDELNLSDNN 188 (350)
T ss_dssp EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC-CEECTTSSTTEEEEEEECTTCT
T ss_pred cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc-cCCChhhccccchhHHhhccCC
Confidence 999999986654 345566788899988777776654 45555 4688999999876 4566666667889999998765
Q ss_pred cccccccccccccCCCC-CCCCCCceeeEEEecCCCCCCCcchhhhcCCCCcccEEEecCCCCccccCccCccccccccc
Q 036466 584 SLSLSLNMEMKEEGSHH-DRKNVGSHLRTLYVARLTPLLELPQWLLQGSSKTLQTLAIGDCPNFMALPGSLKDLEALENL 662 (727)
Q Consensus 584 ~l~~~~~~~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L 662 (727)
.++. ++ ..+..+++|+.|+|++|. +..+|.. .+.+|++|.+.+++..+.+|. +..+++|+.+
T Consensus 189 ~l~~-----------i~~~~f~~l~~L~~LdLs~N~-l~~lp~~----~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l 251 (350)
T 4ay9_X 189 NLEE-----------LPNDVFHGASGPVILDISRTR-IHSLPSY----GLENLKKLRARSTYNLKKLPT-LEKLVALMEA 251 (350)
T ss_dssp TCCC-----------CCTTTTTTEECCSEEECTTSC-CCCCCSS----SCTTCCEEECTTCTTCCCCCC-TTTCCSCCEE
T ss_pred cccC-----------CCHHHhccCcccchhhcCCCC-cCccChh----hhccchHhhhccCCCcCcCCC-chhCcChhhC
Confidence 5542 34 346788999999999984 5666653 367899999988888888985 8899999999
Q ss_pred cccccc
Q 036466 663 VIGICP 668 (727)
Q Consensus 663 ~l~~~~ 668 (727)
++.++.
T Consensus 252 ~l~~~~ 257 (350)
T 4ay9_X 252 SLTYPS 257 (350)
T ss_dssp ECSCHH
T ss_pred cCCCCc
Confidence 997643
No 103
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.55 E-value=1.9e-14 Score=157.44 Aligned_cols=189 Identities=22% Similarity=0.171 Sum_probs=142.0
Q ss_pred CCcceEEEecCCCccccccccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcccccCceeEe
Q 036466 429 SKSLRVLVLTNSAIEVLPRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVV 508 (727)
Q Consensus 429 ~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 508 (727)
+.+|+.|++++|.+..+|..+. ++|++|++++|.+ +.+| ..+++|++|++++|.+.+ +|. +.. +|++|++
T Consensus 58 ~~~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l-~~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 58 INQFSELQLNRLNLSSLPDNLP--PQITVLEITQNAL-ISLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp HTTCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCC-SCCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred cCCccEEEeCCCCCCccCHhHc--CCCCEEECcCCCC-cccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 3589999999999999888663 8999999999984 4777 457899999999976655 776 554 9999999
Q ss_pred cccccccccccCCCCCCCcEEeccccCCchhhhhhccCCCCcCeeecccCcCCCcCccccccCcccceeecccccccccc
Q 036466 509 TTKQKSLLESGIGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNACPRLNLLPPAMKYLSSLERLIFDECESLSLS 588 (727)
Q Consensus 509 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~ 588 (727)
++|.++.+|. .+++|++|++++|.. ..+|. .+++|+.|++++|...+ +|. +. ++|+.|++++|..-
T Consensus 128 s~N~l~~lp~---~l~~L~~L~Ls~N~l-~~lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~--- 193 (571)
T 3cvr_A 128 DNNQLTMLPE---LPALLEYINADNNQL-TMLPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE--- 193 (571)
T ss_dssp CSSCCSCCCC---CCTTCCEEECCSSCC-SCCCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS---
T ss_pred CCCcCCCCCC---cCccccEEeCCCCcc-CcCCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC---
Confidence 9999998776 688999999999754 44665 57899999999987644 776 54 78999999887332
Q ss_pred ccccccccCCCCCCCCCCcee-------eEEEecCCCCCCCcchhhhcCCCCcccEEEecCCCCccccCccCccc
Q 036466 589 LNMEMKEEGSHHDRKNVGSHL-------RTLYVARLTPLLELPQWLLQGSSKTLQTLAIGDCPNFMALPGSLKDL 656 (727)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~L-------~~L~L~~~~~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l 656 (727)
.++. +.. +| +.|+|++|.. ..+|..+ ..+++|+.|+|++|.+.+.+|..+..+
T Consensus 194 ---------~lp~-~~~--~L~~~~~~L~~L~Ls~N~l-~~lp~~l--~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 194 ---------SLPA-VPV--RNHHSEETEIFFRCRENRI-THIPENI--LSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp ---------SCCC-CC----------CCEEEECCSSCC-CCCCGGG--GGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred ---------chhh-HHH--hhhcccccceEEecCCCcc-eecCHHH--hcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 1222 111 55 8888888744 4577666 347788888888887777666655544
No 104
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.54 E-value=2.2e-16 Score=165.15 Aligned_cols=253 Identities=10% Similarity=-0.031 Sum_probs=177.4
Q ss_pred EEEecCCCcccc-ccccCCCCcCcEEeccCCccccccC----ccccCCC-CCCEeecCCCCCCcccChhhccc-----cc
Q 036466 434 VLVLTNSAIEVL-PRKMGNLKQLRHLDLSGNRKIKKLP----NSICELQ-SLQTLNLGDCLELEELPKDIRYL-----VS 502 (727)
Q Consensus 434 ~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~~~~l~~l-----~~ 502 (727)
++.++++.+... |..+....+|++|++++|.+.+..+ ..+..++ +|++|++++|.+....+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 467888888844 4444555669999999999555444 5677888 89999999987776666666665 99
Q ss_pred CceeEecccccccccc-----cCCCC-CCCcEEeccccCCchh----hhhhccC-CCCcCeeecccCcCCC----cCccc
Q 036466 503 LRMFVVTTKQKSLLES-----GIGCL-SSLRFLMISNCGNLEY----LFEDIDQ-LSVLRSLVVNACPRLN----LLPPA 567 (727)
Q Consensus 503 L~~L~l~~~~~~~~~~-----~~~~l-~~L~~L~l~~~~~~~~----l~~~l~~-l~~L~~L~l~~~~~~~----~~~~~ 567 (727)
|+.|++++|.++..+. .+..+ ++|++|++++|..... +...+.. .++|+.|++++|.... .++..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 9999999999984332 24455 8999999999864332 2233445 3699999999998753 33444
Q ss_pred cccCc-ccceeeccccccccccccccccccCCCCCCCCCC-ceeeEEEecCCCCCCC----cchhhhcCCCCcccEEEec
Q 036466 568 MKYLS-SLERLIFDECESLSLSLNMEMKEEGSHHDRKNVG-SHLRTLYVARLTPLLE----LPQWLLQGSSKTLQTLAIG 641 (727)
Q Consensus 568 l~~l~-~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~L~~~~~~~~----l~~~~~~~~~~~L~~L~L~ 641 (727)
+..++ +|++|++++|..-... ...+...+..+ ++|++|+|++|..... ++..+. ...++|++|+|+
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~-------~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~-~~~~~L~~L~Ls 233 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKN-------CAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFS-SIPNHVVSLNLC 233 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSC-------HHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH-HSCTTCCEEECC
T ss_pred HhcCCccccEeeecCCCCchhh-------HHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHh-cCCCCceEEECc
Confidence 55555 8999999998432211 00111122234 5999999999964442 343331 224689999999
Q ss_pred CCCCcccc----CccCcccccccccccccccc-------ccccCccCCCCCccCeeeccCCcch
Q 036466 642 DCPNFMAL----PGSLKDLEALENLVIGICPK-------LSSLPEGMHHLTTLKTLAIEECPAL 694 (727)
Q Consensus 642 ~~~~~~~~----~~~l~~l~~L~~L~l~~~~~-------~~~l~~~l~~l~~L~~L~l~~c~~l 694 (727)
+|.+...- ...+..+++|+.|++++|.. ...++..+..+++|+.|++++|+.-
T Consensus 234 ~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~ 297 (362)
T 3goz_A 234 LNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297 (362)
T ss_dssp SSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred CCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence 99765532 34457889999999999972 2234556778999999999999853
No 105
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.54 E-value=2e-13 Score=144.07 Aligned_cols=299 Identities=13% Similarity=0.017 Sum_probs=181.3
Q ss_pred CCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhc------CCceEEEEecCCC-C
Q 036466 47 RPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEH------FELKIWICVSEDS-G 119 (727)
Q Consensus 47 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~------f~~~~~~~~~~~~-~ 119 (727)
.|..|+||+++++++.+++.....+ ...+.+.|+|++|+|||++|+.+++....... ....+|+++.... +
T Consensus 18 ~p~~l~gr~~~~~~l~~~l~~~~~~--~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 95 (384)
T 2qby_B 18 VFKEIPFREDILRDAAIAIRYFVKN--EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGT 95 (384)
T ss_dssp HCSSCTTCHHHHHHHHHHHHHHHTT--CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSC
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcC--CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCC
Confidence 3478999999999999888653222 34568999999999999999999984322211 3346688877766 7
Q ss_pred HHHHHHHHHHHhcCCCC--CCCChHHHHHHHHHHhCCceEEEEEcCCCCCChhhHHHH-HHhhcCCCCCCEEEEecCchH
Q 036466 120 KRQIMTKIINSVTGGNH--GNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDPRAWGEL-KSLLLGGAEGSKILVTTRSNK 196 (727)
Q Consensus 120 ~~~~~~~ll~~l~~~~~--~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~~-~~~l~~~~~~~~iliTsr~~~ 196 (727)
...++..++.++.+... ...........+.+.+..++.+||||+++.......... ...+.....+..+|+||+...
T Consensus 96 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~ 175 (384)
T 2qby_B 96 PQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDIN 175 (384)
T ss_dssp HHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTT
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCc
Confidence 88888999888843322 233456667778888877666999999976432211122 333332226788888888652
Q ss_pred H----HHHHhhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcC---CchH-HHHHHHhhh--c-
Q 036466 197 V----ALIMATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCR---GIPL-AVRTVGSLL--Y- 265 (727)
Q Consensus 197 ~----~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~---g~Pl-al~~~a~~l--~- 265 (727)
. ...... .....+.+++++.++..+++...+...... .....+.+..+++.++ |.|. ++..+-.+. .
T Consensus 176 ~~~~l~~~l~s-r~~~~i~l~~l~~~~~~~il~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~ 253 (384)
T 2qby_B 176 VRDYMEPRVLS-SLGPSVIFKPYDAEQLKFILSKYAEYGLIK-GTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS 253 (384)
T ss_dssp TTTTSCHHHHH-TCCCEEEECCCCHHHHHHHHHHHHHHTSCT-TSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred hHhhhCHHHHh-cCCCeEEECCCCHHHHHHHHHHHHHhhccc-CCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc
Confidence 1 111111 112489999999999999999875321110 1112345677888887 8887 333332222 1
Q ss_pred C--CCChhhHHHHHhccccccccCCCChhHHHHHhhhcCChhHHHHHhHhccCCCC-CccChHHHHHHHHhcccccCCCC
Q 036466 266 G--STDEHDWEYVRDNDIWKLRQAPDDILPALRLSYDQLPPHLKQCFAYCSIFPKD-YEFASVHLVQLWMAHGLLQSPNK 342 (727)
Q Consensus 266 ~--~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~~~la~f~~~-~~~~~~~l~~~w~~~~~~~~~~~ 342 (727)
+ .-....+....... ....+..++..|++.++.++..++. ... .++. .......-..| ..
T Consensus 254 ~~~~i~~~~v~~~~~~~----------~~~~~~~~~~~l~~~~~~~l~al~~-~~~~~~~~-~~~~~~~~~~g-~~---- 316 (384)
T 2qby_B 254 GGGIIRKEHVDKAIVDY----------EQERLIEAVKALPFHYKLALRSLIE-SEDVMSAH-KMYTDLCNKFK-QK---- 316 (384)
T ss_dssp SSSCCCHHHHHHHHHHH----------HHHHHHHHHHSSCHHHHHHHHHHHT-CCBHHHHH-HHHHHHHHHTT-CC----
T ss_pred CCCccCHHHHHHHHHHH----------hcchHHHHHHcCCHHHHHHHHHHHH-hcccChHH-HHHHHHHHHcC-CC----
Confidence 1 12233333222211 1134566778999999999888887 211 1110 11111111122 11
Q ss_pred CchHHHHHHHHHHHHHhCCcceecC
Q 036466 343 NEELENIGMRYFKELCSRSFFQDLG 367 (727)
Q Consensus 343 ~~~~~~~~~~~l~~L~~~~ll~~~~ 367 (727)
.........++..|...+++....
T Consensus 317 -~~~~~~~~~~l~~L~~~gli~~~~ 340 (384)
T 2qby_B 317 -PLSYRRFSDIISELDMFGIVKIRI 340 (384)
T ss_dssp -CCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred -CCCHHHHHHHHHHHHhCCCEEEEe
Confidence 112355778899999999998743
No 106
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.53 E-value=4.7e-14 Score=142.30 Aligned_cols=124 Identities=20% Similarity=0.274 Sum_probs=68.9
Q ss_pred CCCcceEEEecCCCccccccccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcccccCceeE
Q 036466 428 KSKSLRVLVLTNSAIEVLPRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFV 507 (727)
Q Consensus 428 ~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 507 (727)
.+++|+.|++++|.+..++ .+..+++|++|++++|.+ ..+++ +..+++|++|++++|.... ++ .+..+++|++|+
T Consensus 44 ~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l-~~~~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~ 118 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKL-TDIKP-LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLS 118 (291)
T ss_dssp HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCC-CCCGG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEE
T ss_pred hcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCcc-CCCcc-cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEE
Confidence 4566777777777766654 366667777777777663 33333 6666677777776654332 32 355566666666
Q ss_pred ecccccccccccCCCCCCCcEEeccccCCchhhhhhccCCCCcCeeecccCc
Q 036466 508 VTTKQKSLLESGIGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNACP 559 (727)
Q Consensus 508 l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~ 559 (727)
+++|.+..++ .+..+++|++|++++|... .+ ..+..+++|+.|++++|.
T Consensus 119 L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~-~~-~~l~~l~~L~~L~L~~N~ 167 (291)
T 1h6t_A 119 LEHNGISDIN-GLVHLPQLESLYLGNNKIT-DI-TVLSRLTKLDTLSLEDNQ 167 (291)
T ss_dssp CTTSCCCCCG-GGGGCTTCCEEECCSSCCC-CC-GGGGGCTTCSEEECCSSC
T ss_pred CCCCcCCCCh-hhcCCCCCCEEEccCCcCC-cc-hhhccCCCCCEEEccCCc
Confidence 6666555432 3444555555555554322 12 334444555555555443
No 107
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.52 E-value=5.3e-13 Score=141.12 Aligned_cols=302 Identities=13% Similarity=0.042 Sum_probs=180.4
Q ss_pred CCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHh---c-CCceEEEEecCCCCHHH
Q 036466 47 RPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEE---H-FELKIWICVSEDSGKRQ 122 (727)
Q Consensus 47 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~---~-f~~~~~~~~~~~~~~~~ 122 (727)
.|..|+||+++++.+..++.....+ ...+.+.|+|++|+||||+|+.++....... . -...+|+++....+...
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~~--~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 94 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALRG--EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYR 94 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTSS--CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHcC--CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHH
Confidence 4478999999999999998654211 3456899999999999999999998432211 1 22356888888888889
Q ss_pred HHHHHHHHhcCCCC-CCCChHHHHHHHHHHhC--CceEEEEEcCCCCCChh--hHHHHHHhhc---CC--CCCCEEEEec
Q 036466 123 IMTKIINSVTGGNH-GNLDPDRLQKVLRDSLN--GKRYLLVMDDVWNEDPR--AWGELKSLLL---GG--AEGSKILVTT 192 (727)
Q Consensus 123 ~~~~ll~~l~~~~~-~~~~~~~~~~~l~~~l~--~~~~LlvlDd~~~~~~~--~~~~~~~~l~---~~--~~~~~iliTs 192 (727)
++..++.+++.... ......+....+.+.+. +++.+||||+++..... ....+...+. .. ..+..+|.||
T Consensus 95 ~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t 174 (387)
T 2v1u_A 95 VASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGIT 174 (387)
T ss_dssp HHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEEC
T ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEE
Confidence 99999999864322 23345666677777764 46899999999765322 2222332222 11 3466778777
Q ss_pred CchHH----HHHHhhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcC---CchHHHHHHHhhhc
Q 036466 193 RSNKV----ALIMATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCR---GIPLAVRTVGSLLY 265 (727)
Q Consensus 193 r~~~~----~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~---g~Plal~~~a~~l~ 265 (727)
+.... .......-....+.+++++.++..+++...+...... .....+++..+++.++ |.|..+..+.....
T Consensus 175 ~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~ 253 (387)
T 2v1u_A 175 NSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNP-GVLDPDVVPLCAALAAREHGDARRALDLLRVAG 253 (387)
T ss_dssp SCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCT-TTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred CCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccC-CCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 76421 1111111111479999999999999998875321100 1112345677888887 99944333322221
Q ss_pred ------CC--CChhhHHHHHhccccccccCCCChhHHHHHhhhcCChhHHHHHhHhcc-CCCCCccChHHHHHHH----H
Q 036466 266 ------GS--TDEHDWEYVRDNDIWKLRQAPDDILPALRLSYDQLPPHLKQCFAYCSI-FPKDYEFASVHLVQLW----M 332 (727)
Q Consensus 266 ------~~--~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~~~la~-f~~~~~~~~~~l~~~w----~ 332 (727)
+. -....+....... ....+..++..+++..+..+..++. +.....+....+.... -
T Consensus 254 ~~a~~~~~~~i~~~~v~~a~~~~----------~~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (387)
T 2v1u_A 254 EIAERRREERVRREHVYSARAEI----------ERDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTS 323 (387)
T ss_dssp HHHHHTTCSCBCHHHHHHHHHHH----------HHHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCcCHHHHHHHHHHH----------hhchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 11 1222222222110 1224556778999999998887774 3322233333332222 1
Q ss_pred hcccccCCCCCchHHHHHHHHHHHHHhCCcceecC
Q 036466 333 AHGLLQSPNKNEELENIGMRYFKELCSRSFFQDLG 367 (727)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~ 367 (727)
..| .. ......+..+++.|...+++....
T Consensus 324 ~~~-~~-----~~~~~~~~~~l~~L~~~gli~~~~ 352 (387)
T 2v1u_A 324 TLG-LE-----HVTLRRVSGIISELDMLGIVKSRV 352 (387)
T ss_dssp HTT-CC-----CCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred hcC-CC-----CCCHHHHHHHHHHHHhCCCeEEEe
Confidence 122 11 112456778899999999998743
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.51 E-value=5.7e-14 Score=155.49 Aligned_cols=123 Identities=20% Similarity=0.281 Sum_probs=51.4
Q ss_pred CCcceEEEecCCCccccccccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcccccCceeEe
Q 036466 429 SKSLRVLVLTNSAIEVLPRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVV 508 (727)
Q Consensus 429 ~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 508 (727)
+++|+.|++++|.+..++ .+..+++|+.|+|++|.+. .+++ +..+++|+.|+|++|.+. .+| .+..+++|+.|++
T Consensus 42 L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~-~~~~-l~~l~~L~~L~Ls~N~l~-~l~-~l~~l~~L~~L~L 116 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLT-DIKP-LTNLKNLGWLFLDENKIK-DLS-SLKDLKKLKSLSL 116 (605)
T ss_dssp HTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCC-CCGG-GGGCTTCCEEECCSSCCC-CCT-TSTTCTTCCEEEC
T ss_pred CCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCC-CChh-hccCCCCCEEECcCCCCC-CCh-hhccCCCCCEEEe
Confidence 344444555555444443 2444445555555444422 2222 444444444544443322 222 3444444444444
Q ss_pred cccccccccccCCCCCCCcEEeccccCCchhhhhhccCCCCcCeeecccCc
Q 036466 509 TTKQKSLLESGIGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNACP 559 (727)
Q Consensus 509 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~ 559 (727)
++|.+..++ .+..+++|+.|+|++|.... + ..+..+++|+.|+|++|.
T Consensus 117 s~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~ 164 (605)
T 1m9s_A 117 EHNGISDIN-GLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQ 164 (605)
T ss_dssp TTSCCCCCG-GGGGCTTCSEEECCSSCCCC-C-GGGGSCTTCSEEECCSSC
T ss_pred cCCCCCCCc-cccCCCccCEEECCCCccCC-c-hhhcccCCCCEEECcCCc
Confidence 444444322 23344444444444432211 1 233344444444444443
No 109
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.51 E-value=3.2e-14 Score=134.61 Aligned_cols=150 Identities=16% Similarity=0.187 Sum_probs=104.8
Q ss_pred cCCCcceEEEecCCCccccccccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcccccCcee
Q 036466 427 SKSKSLRVLVLTNSAIEVLPRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMF 506 (727)
Q Consensus 427 ~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 506 (727)
..+++|+.|++++|.+..+| .+..+++|++|++++|. ...+ +.+..+++|++|++++|......+..+..+++|++|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~-~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIH-ATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCC-CSCC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCC-CCcc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 45678888888888888777 67788888888888884 3333 357778888888888877666566677777777777
Q ss_pred Eeccccccc-ccccCCCCCCCcEEeccccCCchhhhhhccCCCCcCeeecccCcCCCcCccccccCcccceeecccc
Q 036466 507 VVTTKQKSL-LESGIGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNACPRLNLLPPAMKYLSSLERLIFDEC 582 (727)
Q Consensus 507 ~l~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 582 (727)
++++|.++. .+..+..+++|++|++++|..+..++ .+..+++|+.|++++|... .++ .+..+++|+.|++++|
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~-~~~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVH-DYR-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCC-CCT-TGGGCSSCCEEEECBC
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCc-ChH-HhccCCCCCEEEeeCc
Confidence 777777763 44556677777777777765455554 5666777777777776543 233 4556666666666654
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.50 E-value=1.2e-13 Score=152.80 Aligned_cols=188 Identities=16% Similarity=0.187 Sum_probs=122.0
Q ss_pred cceEEEecCCCccccccccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcccccCceeEecc
Q 036466 431 SLRVLVLTNSAIEVLPRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTT 510 (727)
Q Consensus 431 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 510 (727)
.+..+.+..+.+..+.. +..+.+|+.|++++|. +..++ .+..+++|+.|+|++|.+....+ +..+++|+.|++++
T Consensus 22 ~l~~l~l~~~~i~~~~~-~~~L~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSD-IKSVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHHTTCSCTTSEEC-HHHHTTCCCCBCTTCC-CCCCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred HHHHHhccCCCcccccc-hhcCCCCCEEECcCCC-CCCCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence 34444555555554432 4568889999999887 45555 48889999999999876554433 88899999999999
Q ss_pred cccccccccCCCCCCCcEEeccccCCchhhhhhccCCCCcCeeecccCcCCCcCccccccCcccceeecccccccccccc
Q 036466 511 KQKSLLESGIGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNACPRLNLLPPAMKYLSSLERLIFDECESLSLSLN 590 (727)
Q Consensus 511 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~ 590 (727)
|.+..++ .+..+++|+.|+|++|.... + +.+..+++|+.|+|++|.... + ..+..+++|+.|+|++|.....
T Consensus 97 N~l~~l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~~--- 168 (605)
T 1m9s_A 97 NKIKDLS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISDI--- 168 (605)
T ss_dssp SCCCCCT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCC-C-GGGGSCTTCSEEECCSSCCCCC---
T ss_pred CCCCCCh-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCC-c-hhhcccCCCCEEECcCCcCCCc---
Confidence 9888765 67888889999998875433 3 457788888888888876543 3 4566677777777776532111
Q ss_pred ccccccCCCCCCCCCCceeeEEEecCCCCCCCcchhhhcCCCCcccEEEecCCCC
Q 036466 591 MEMKEEGSHHDRKNVGSHLRTLYVARLTPLLELPQWLLQGSSKTLQTLAIGDCPN 645 (727)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~~~L~~L~L~~~~~ 645 (727)
.. +..+++|+.|+|++|.. ..++. + ..+++|+.|+|++|.+
T Consensus 169 ---------~~-l~~l~~L~~L~Ls~N~i-~~l~~-l--~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 169 ---------VP-LAGLTKLQNLYLSKNHI-SDLRA-L--AGLKNLDVLELFSQEC 209 (605)
T ss_dssp ---------GG-GTTCTTCCEEECCSSCC-CBCGG-G--TTCTTCSEEECCSEEE
T ss_pred ---------hh-hccCCCCCEEECcCCCC-CCChH-H--ccCCCCCEEEccCCcC
Confidence 11 33445555555555532 22221 2 3445555555555543
No 111
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.50 E-value=8e-16 Score=172.86 Aligned_cols=105 Identities=16% Similarity=0.187 Sum_probs=59.2
Q ss_pred CCeeEEEeccCCCcchhhhhhhhhcCCCcceEEEecCCCccc-----cccccCCCCcCcEEeccCCc--cc-cccCcccc
Q 036466 403 GRVRTILFPIDDERTSQSFVTSCISKSKSLRVLVLTNSAIEV-----LPRKMGNLKQLRHLDLSGNR--KI-KKLPNSIC 474 (727)
Q Consensus 403 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-----l~~~~~~l~~L~~L~l~~~~--~~-~~~~~~~~ 474 (727)
..++.+.+.... ......++..+.+|++|++|++++|.+.. ++.....+++|+.|++++|. .. ..++..+.
T Consensus 130 ~~L~~L~L~~~~-~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~ 208 (594)
T 2p1m_B 130 KNFKVLVLSSCE-GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVT 208 (594)
T ss_dssp TTCCEEEEESCE-EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHH
T ss_pred CCCcEEeCCCcC-CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHH
Confidence 356666664221 22222344555678888888888887553 23333467788888888775 11 11222234
Q ss_pred CCCCCCEeecCCCCCCcccChhhcccccCceeEe
Q 036466 475 ELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVV 508 (727)
Q Consensus 475 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 508 (727)
.+++|++|++++|.....++..+.++++|+.|++
T Consensus 209 ~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l 242 (594)
T 2p1m_B 209 RCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGT 242 (594)
T ss_dssp HCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEEC
T ss_pred hCCCCcEEecCCCCcHHHHHHHHhcCCcceEccc
Confidence 4677888888776444444444555555555543
No 112
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.49 E-value=1.1e-15 Score=171.63 Aligned_cols=93 Identities=15% Similarity=0.164 Sum_probs=61.7
Q ss_pred CCCCceeeEEEecCCCCCCCcchhhhcCCCCcccEEEecCCCCccccCccC-ccccccccccccccccccccC-ccCCCC
Q 036466 603 KNVGSHLRTLYVARLTPLLELPQWLLQGSSKTLQTLAIGDCPNFMALPGSL-KDLEALENLVIGICPKLSSLP-EGMHHL 680 (727)
Q Consensus 603 ~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~l~-~~l~~l 680 (727)
+..+++|+.|+|++ .........+ ...+++|+.|+|++|.+....+..+ ..+++|+.|++++|....... .....+
T Consensus 428 ~~~~~~L~~L~L~~-~l~~~~~~~l-~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l 505 (594)
T 2p1m_B 428 VEHCKDLRRLSLSG-LLTDKVFEYI-GTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKL 505 (594)
T ss_dssp HHHCTTCCEEECCS-SCCHHHHHHH-HHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGG
T ss_pred HhhCCCccEEeecC-cccHHHHHHH-HHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhC
Confidence 34566888888866 2222222222 1237889999999987644333333 668999999999998744322 244568
Q ss_pred CccCeeeccCCcchhhh
Q 036466 681 TTLKTLAIEECPALCER 697 (727)
Q Consensus 681 ~~L~~L~l~~c~~l~~~ 697 (727)
++|+.|++++|+...+.
T Consensus 506 ~~L~~L~l~~~~~~~~~ 522 (594)
T 2p1m_B 506 ETMRSLWMSSCSVSFGA 522 (594)
T ss_dssp GGSSEEEEESSCCBHHH
T ss_pred CCCCEEeeeCCCCCHHH
Confidence 99999999999874443
No 113
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.49 E-value=1.8e-13 Score=137.96 Aligned_cols=137 Identities=17% Similarity=0.224 Sum_probs=87.4
Q ss_pred EecCCCccccccccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcccccCceeEeccccccc
Q 036466 436 VLTNSAIEVLPRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTKQKSL 515 (727)
Q Consensus 436 ~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 515 (727)
.+..+.+..+. .+..+++|+.|++++|. +..++. +..+++|++|++++|.... ++. +..+++|+.|++++|.+..
T Consensus 30 ~l~~~~~~~~~-~~~~l~~L~~L~l~~~~-i~~~~~-~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~ 104 (291)
T 1h6t_A 30 NLKKKSVTDAV-TQNELNSIDQIIANNSD-IKSVQG-IQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENKVKD 104 (291)
T ss_dssp HTTCSCTTSEE-CHHHHHTCCEEECTTSC-CCCCTT-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC
T ss_pred HhcCCCccccc-chhhcCcccEEEccCCC-cccChh-HhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCcCCC
Confidence 34444443322 23457778888888876 444443 7778888888888765544 333 7778888888888887776
Q ss_pred ccccCCCCCCCcEEeccccCCchhhhhhccCCCCcCeeecccCcCCCcCccccccCcccceeecccc
Q 036466 516 LESGIGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNACPRLNLLPPAMKYLSSLERLIFDEC 582 (727)
Q Consensus 516 ~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 582 (727)
++. +..+++|++|++++|.. ..+ ..+..+++|+.|++++|.... + ..+..+++|+.|++++|
T Consensus 105 ~~~-l~~l~~L~~L~L~~n~i-~~~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~N 166 (291)
T 1h6t_A 105 LSS-LKDLKKLKSLSLEHNGI-SDI-NGLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDN 166 (291)
T ss_dssp GGG-GTTCTTCCEEECTTSCC-CCC-GGGGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSS
T ss_pred Chh-hccCCCCCEEECCCCcC-CCC-hhhcCCCCCCEEEccCCcCCc-c-hhhccCCCCCEEEccCC
Confidence 543 67777777777777643 223 456667777777777765532 2 34555566666666554
No 114
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.48 E-value=4.4e-13 Score=128.10 Aligned_cols=181 Identities=17% Similarity=0.110 Sum_probs=114.8
Q ss_pred CcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcccccCceeEeccccccccccc-CCCCCCCcEEeccc
Q 036466 455 LRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTKQKSLLESG-IGCLSSLRFLMISN 533 (727)
Q Consensus 455 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~ 533 (727)
-+.++.+++. ...+|..+ .++|++|++++|......+..+..+++|++|++++|.+..++.. +..+++|++|++++
T Consensus 9 ~~~v~c~~~~-l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 9 GTTVECYSQG-RTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TTEEECCSSC-CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCC-ccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 3566666655 44555433 45788888888766554445577888888888888887755543 46777788888777
Q ss_pred cCCchhhhhhccCCCCcCeeecccCcCCCcCccccccCcccceeeccccccccccccccccccCCCCCCCCCCceeeEEE
Q 036466 534 CGNLEYLFEDIDQLSVLRSLVVNACPRLNLLPPAMKYLSSLERLIFDECESLSLSLNMEMKEEGSHHDRKNVGSHLRTLY 613 (727)
Q Consensus 534 ~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 613 (727)
|......+..+..+++|+.|++++|......+..+..+++|++|++++
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~-------------------------------- 133 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQ-------------------------------- 133 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS--------------------------------
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCC--------------------------------
Confidence 644332233456777777777777655433333345555555555554
Q ss_pred ecCCCCCCCcchhhhcCCCCcccEEEecCCCCccccCccCccccccccccccccccccccCccCCCCCc
Q 036466 614 VARLTPLLELPQWLLQGSSKTLQTLAIGDCPNFMALPGSLKDLEALENLVIGICPKLSSLPEGMHHLTT 682 (727)
Q Consensus 614 L~~~~~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~ 682 (727)
|... .++.... ..+++|++|++++|.+. ..+++|+.|++..|...+.+|..++.++.
T Consensus 134 ---N~l~-~~~~~~~-~~l~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 134 ---NQLK-SVPDGVF-DRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp ---SCCS-CCCTTTT-TTCTTCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ---Cccc-eeCHHHh-ccCCCccEEEecCCCee-------cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 4222 2222211 45678888888887543 34567888888888888888877766654
No 115
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.48 E-value=3.1e-13 Score=130.09 Aligned_cols=149 Identities=14% Similarity=0.179 Sum_probs=121.2
Q ss_pred eEEEecCCCccccccccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcccccCceeEecccc
Q 036466 433 RVLVLTNSAIEVLPRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTKQ 512 (727)
Q Consensus 433 ~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 512 (727)
+.++++++.+..+|..+. .+++.|++++|.+.+..+..+..+++|++|++++|.+....|..+..+++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 678899999988887665 789999999998554444578889999999999988777778889999999999999999
Q ss_pred ccccccc-CCCCCCCcEEeccccCCchhhhhhccCCCCcCeeecccCcCCCcCccccccCcccceeeccccc
Q 036466 513 KSLLESG-IGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNACPRLNLLPPAMKYLSSLERLIFDECE 583 (727)
Q Consensus 513 ~~~~~~~-~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 583 (727)
++.++.. +..+++|++|++++|......+..+..+++|+.|++++|...+..+..+..+++|+.|++++|+
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 9977654 5788999999999976655556778889999999999888765555567778888888888764
No 116
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.48 E-value=2.9e-13 Score=148.04 Aligned_cols=188 Identities=19% Similarity=0.199 Sum_probs=142.5
Q ss_pred CcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcccccCceeEecccccccccccCCCCCCCcEEecc
Q 036466 453 KQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTKQKSLLESGIGCLSSLRFLMIS 532 (727)
Q Consensus 453 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~ 532 (727)
.+|+.|++++|.+ +.+|..+ +++|++|++++|.+. .+| ..+++|+.|++++|.++.+|. +.. +|++|+++
T Consensus 59 ~~L~~L~Ls~n~L-~~lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 59 NQFSELQLNRLNL-SSLPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TTCSEEECCSSCC-SCCCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECC
T ss_pred CCccEEEeCCCCC-CccCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECC
Confidence 3899999999984 4588765 378999999987655 677 557899999999999998777 544 99999999
Q ss_pred ccCCchhhhhhccCCCCcCeeecccCcCCCcCccccccCcccceeeccccccccccccccccccCCCCCCCCCCceeeEE
Q 036466 533 NCGNLEYLFEDIDQLSVLRSLVVNACPRLNLLPPAMKYLSSLERLIFDECESLSLSLNMEMKEEGSHHDRKNVGSHLRTL 612 (727)
Q Consensus 533 ~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L 612 (727)
+|.. ..+|. .+++|+.|++++|... .+|. .+++|+.|++++|..- .++. +. ++|+.|
T Consensus 129 ~N~l-~~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~L~------------~lp~-l~--~~L~~L 185 (571)
T 3cvr_A 129 NNQL-TMLPE---LPALLEYINADNNQLT-MLPE---LPTSLEVLSVRNNQLT------------FLPE-LP--ESLEAL 185 (571)
T ss_dssp SSCC-SCCCC---CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS------------CCCC-CC--TTCCEE
T ss_pred CCcC-CCCCC---cCccccEEeCCCCccC-cCCC---cCCCcCEEECCCCCCC------------Ccch-hh--CCCCEE
Confidence 9754 44666 6889999999998764 4665 5788999999987422 1233 22 789999
Q ss_pred EecCCCCCCCcchhhhcCCCCcc-------cEEEecCCCCccccCccCccccccccccccccccccccCccCCCC
Q 036466 613 YVARLTPLLELPQWLLQGSSKTL-------QTLAIGDCPNFMALPGSLKDLEALENLVIGICPKLSSLPEGMHHL 680 (727)
Q Consensus 613 ~L~~~~~~~~l~~~~~~~~~~~L-------~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l 680 (727)
+|++|.. +.+|. + . .+| +.|+|++|.+ +.+|..+..+++|+.|+|++|++.+.+|..+..+
T Consensus 186 ~Ls~N~L-~~lp~-~--~--~~L~~~~~~L~~L~Ls~N~l-~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 186 DVSTNLL-ESLPA-V--P--VRNHHSEETEIFFRCRENRI-THIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp ECCSSCC-SSCCC-C--C----------CCEEEECCSSCC-CCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred ECcCCCC-Cchhh-H--H--HhhhcccccceEEecCCCcc-eecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 9999854 46665 3 1 156 9999998864 4678878889999999999998887777655443
No 117
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.46 E-value=3.5e-13 Score=127.41 Aligned_cols=128 Identities=17% Similarity=0.217 Sum_probs=78.3
Q ss_pred CCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcccccCceeEeccccccc-ccccCCCCCCCcE
Q 036466 450 GNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTKQKSL-LESGIGCLSSLRF 528 (727)
Q Consensus 450 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~l~~L~~ 528 (727)
..+++|+.|++++|. +..+| .+..+++|++|++++|. ...+ ..+..+++|++|++++|.++. .+..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~l~~n~-~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANIN-VTDLT-GIEYAHNIKDLTINNIH-ATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSC-CSCCT-TGGGCTTCSEEEEESCC-CSCC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCC-ccChH-HHhcCCCCCEEEccCCC-CCcc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 446677777777776 33555 46777777777777762 2233 356667777777777777663 4555666667777
Q ss_pred EeccccCCchhhhhhccCCCCcCeeecccCcCCCcCccccccCcccceeecccc
Q 036466 529 LMISNCGNLEYLFEDIDQLSVLRSLVVNACPRLNLLPPAMKYLSSLERLIFDEC 582 (727)
Q Consensus 529 L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 582 (727)
|++++|......+..+..+++|+.|++++|..++.++ .+..+++|+.|++++|
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n 169 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD 169 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC
Confidence 7777665555555666666666666666665344443 3444444555444443
No 118
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.44 E-value=7.1e-13 Score=127.57 Aligned_cols=149 Identities=16% Similarity=0.116 Sum_probs=117.1
Q ss_pred eEEEecCCCccccccccCCCCcCcEEeccCCccccccC-ccccCCCCCCEeecCCCCCCcccChhhcccccCceeEeccc
Q 036466 433 RVLVLTNSAIEVLPRKMGNLKQLRHLDLSGNRKIKKLP-NSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTK 511 (727)
Q Consensus 433 ~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 511 (727)
+.++++++.+..+|..+. ..+++|++++|.+.+..+ ..+..+++|++|++++|.+....+..+..+++|+.|++++|
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 588999999988887664 456899999988554433 34778899999999987766666668888999999999999
Q ss_pred ccccccc-cCCCCCCCcEEeccccCCchhhhhhccCCCCcCeeecccCcCCCcCccccccCcccceeeccccc
Q 036466 512 QKSLLES-GIGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNACPRLNLLPPAMKYLSSLERLIFDECE 583 (727)
Q Consensus 512 ~~~~~~~-~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 583 (727)
.++.++. .+..+++|++|++++|......+..+..+++|+.|++++|...+..|..+..+++|+.|++++|+
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 8885554 47888899999998876655556778888889999998887766667777778888888877763
No 119
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.44 E-value=1.9e-12 Score=127.37 Aligned_cols=190 Identities=15% Similarity=0.134 Sum_probs=123.2
Q ss_pred CCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCC-------------------c
Q 036466 48 PSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFE-------------------L 108 (727)
Q Consensus 48 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~-------------------~ 108 (727)
...++||+++++.|..++... ...+.++|+|++|+||||+|+.++........+. .
T Consensus 22 ~~~~~g~~~~~~~l~~~l~~~-----~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (250)
T 1njg_A 22 FADVVGQEHVLTALANGLSLG-----RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVD 96 (250)
T ss_dssp GGGCCSCHHHHHHHHHHHHHT-----CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSS
T ss_pred HHHHhCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcc
Confidence 356999999999999999763 2345899999999999999999987422111110 1
Q ss_pred eEEEEecCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCChhhHHHHHHhhcCCCCCCEE
Q 036466 109 KIWICVSEDSGKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKI 188 (727)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~i 188 (727)
.+.+.... ....+...+++..+... ...+++.+|||||++..+...+..+...+.....+..+
T Consensus 97 ~~~~~~~~-~~~~~~~~~~~~~~~~~----------------~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~ 159 (250)
T 1njg_A 97 LIEIDAAS-RTKVEDTRDLLDNVQYA----------------PARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKF 159 (250)
T ss_dssp EEEEETTC-GGGHHHHHHHHHSCCCS----------------CSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEE
T ss_pred eEEecCcc-cccHHHHHHHHHHhhhc----------------hhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEE
Confidence 11111110 01111112222221000 01246799999999888777777787777665567888
Q ss_pred EEecCchHHH-HHHhhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchHHHHHHHhhh
Q 036466 189 LVTTRSNKVA-LIMATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVRTVGSLL 264 (727)
Q Consensus 189 liTsr~~~~~-~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l 264 (727)
|+||+..... .... .....+.+++++.++..+++...+...+.. ...+.+..+++.++|+|..+..++..+
T Consensus 160 i~~t~~~~~~~~~l~--~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~---~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 160 LLATTDPQKLPVTIL--SRCLQFHLKALDVEQIRHQLEHILNEEHIA---HEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp EEEESCGGGSCHHHH--TTSEEEECCCCCHHHHHHHHHHHHHHTTCC---BCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred EEEeCChHhCCHHHH--HHhhhccCCCCCHHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 8888764321 1111 123689999999999999999877543322 224567899999999999988776544
No 120
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.43 E-value=9.5e-13 Score=127.61 Aligned_cols=150 Identities=21% Similarity=0.149 Sum_probs=112.7
Q ss_pred cceEEEecCCCccccccccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcccccCceeEecc
Q 036466 431 SLRVLVLTNSAIEVLPRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTT 510 (727)
Q Consensus 431 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 510 (727)
+.+.++++++.+..+|..+. ++|++|++++|.+.+..|..+..+++|++|++++|.+....+..+..+++|+.|++++
T Consensus 20 s~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred eCCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 34678888888888887654 7889999998886666677788888899999988766444445678888889999888
Q ss_pred ccccccccc-CCCCCCCcEEeccccCCchhhhhhccCCCCcCeeecccCcCCCcCccccccCcccceeeccccc
Q 036466 511 KQKSLLESG-IGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNACPRLNLLPPAMKYLSSLERLIFDECE 583 (727)
Q Consensus 511 ~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 583 (727)
|.++.++.. +..+++|++|++++|. +..+|..+..+++|+.|++++|......+..+..+++|+.|++++|+
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CcCCccChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 888866544 5778888888888864 44677778888888888888876654333456667777777777653
No 121
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.43 E-value=9e-16 Score=168.92 Aligned_cols=203 Identities=13% Similarity=0.024 Sum_probs=118.1
Q ss_pred CCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCC-------------CCcccChhhcccccCceeE-eccccccc
Q 036466 450 GNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCL-------------ELEELPKDIRYLVSLRMFV-VTTKQKSL 515 (727)
Q Consensus 450 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-------------~~~~~~~~l~~l~~L~~L~-l~~~~~~~ 515 (727)
..+++|+.|++++|. ++.+|+.++++++|+.|++++|. ..+..|..++++++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~-L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEK-STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHH-HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhh-HHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 456777778887776 45777777777778877776543 3344556667777777776 4544332
Q ss_pred ccccCCCCCCCcEEeccccCCchhhhhhccCCCCcCeeecccCcCCCcCccccccCcccceeeccccccccccccccccc
Q 036466 516 LESGIGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNACPRLNLLPPAMKYLSSLERLIFDECESLSLSLNMEMKE 595 (727)
Q Consensus 516 ~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~ 595 (727)
.|+.+.+.+| .+..++. ..|+.|++++|... .+|. +..+++|+.|++++|..-
T Consensus 424 ---------~L~~l~l~~n-~i~~l~~-----~~L~~L~Ls~n~l~-~lp~-~~~l~~L~~L~Ls~N~l~---------- 476 (567)
T 1dce_A 424 ---------DLRSKFLLEN-SVLKMEY-----ADVRVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLR---------- 476 (567)
T ss_dssp ---------HHHHHHHHHH-HHHHHHH-----TTCSEEECTTSCCS-SCCC-GGGGTTCCEEECCSSCCC----------
T ss_pred ---------hhhhhhhhcc-cccccCc-----cCceEEEecCCCCC-CCcC-ccccccCcEeecCccccc----------
Confidence 1222222221 1122221 13555666655442 3444 555555666655554211
Q ss_pred cCCCCCCCCCCceeeEEEecCCCCCCCcchhhhcCCCCcccEEEecCCCCcccc-CccCccccccccccccccccccccC
Q 036466 596 EGSHHDRKNVGSHLRTLYVARLTPLLELPQWLLQGSSKTLQTLAIGDCPNFMAL-PGSLKDLEALENLVIGICPKLSSLP 674 (727)
Q Consensus 596 ~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~l~ 674 (727)
.+|..+..+++|+.|+|++|... .+| .+ +.+++|+.|+|++|.+.+.. |..+..+++|+.|+|++|++.+..|
T Consensus 477 --~lp~~~~~l~~L~~L~Ls~N~l~-~lp-~l--~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 477 --ALPPALAALRCLEVLQASDNALE-NVD-GV--ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp --CCCGGGGGCTTCCEEECCSSCCC-CCG-GG--TTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred --ccchhhhcCCCCCEEECCCCCCC-CCc-cc--CCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 22333444555566666665433 355 34 56788888888888766554 7778888888888888887554432
Q ss_pred ccC----CCCCccCeeec
Q 036466 675 EGM----HHLTTLKTLAI 688 (727)
Q Consensus 675 ~~l----~~l~~L~~L~l 688 (727)
.. ..+|+|+.|++
T Consensus 551 -~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 551 -IQERLAEMLPSVSSILT 567 (567)
T ss_dssp -CTTHHHHHCTTCSEEEC
T ss_pred -HHHHHHHHCcccCccCC
Confidence 22 23677777753
No 122
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.41 E-value=1.8e-12 Score=136.87 Aligned_cols=302 Identities=13% Similarity=0.073 Sum_probs=177.3
Q ss_pred CCCCCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcC---CceEEEEecCCCCH
Q 036466 44 SFVRPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHF---ELKIWICVSEDSGK 120 (727)
Q Consensus 44 ~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f---~~~~~~~~~~~~~~ 120 (727)
+...|..|+||+++++.+.+++.....+ ...+.++|+|++|+||||||+.++.. ....+ ..++|+++....+.
T Consensus 15 ~~~~p~~~~gr~~e~~~l~~~l~~~~~~--~~~~~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~~~~~~~~ 90 (386)
T 2qby_A 15 PDYIPDELPHREDQIRKIASILAPLYRE--EKPNNIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYINTRQIDTP 90 (386)
T ss_dssp SSCCCSCCTTCHHHHHHHHHSSGGGGGT--CCCCCEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEEHHHHCSH
T ss_pred CccCCCCCCChHHHHHHHHHHHHHHHcC--CCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEECCCCCCH
Confidence 3345578999999999999988753111 34568999999999999999999983 33332 34568887766677
Q ss_pred HHHHHHHHHHhcCCCC-CCCChHHHHHHHHHHhC--CceEEEEEcCCCCCC----hhhHHHHHHhhcC-CCCCCEEEEec
Q 036466 121 RQIMTKIINSVTGGNH-GNLDPDRLQKVLRDSLN--GKRYLLVMDDVWNED----PRAWGELKSLLLG-GAEGSKILVTT 192 (727)
Q Consensus 121 ~~~~~~ll~~l~~~~~-~~~~~~~~~~~l~~~l~--~~~~LlvlDd~~~~~----~~~~~~~~~~l~~-~~~~~~iliTs 192 (727)
..++..++.+++.... ...+..+....+.+.+. +++.+||||+++... ...+..+...+.. ...+..+|+||
T Consensus 91 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~ 170 (386)
T 2qby_A 91 YRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGIT 170 (386)
T ss_dssp HHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEE
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEE
Confidence 7778888777743321 22345565666666664 348999999996532 2234444444422 23356677777
Q ss_pred CchHHH----HHHhhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcC---CchHHHHHHHhhhc
Q 036466 193 RSNKVA----LIMATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCR---GIPLAVRTVGSLLY 265 (727)
Q Consensus 193 r~~~~~----~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~---g~Plal~~~a~~l~ 265 (727)
+..... ......-....+.+++++.++..+++...+...... .....++...+++.++ |+|..+..++....
T Consensus 171 ~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~ 249 (386)
T 2qby_A 171 NDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKP-GVLPDNVIKLCAALAAREHGDARRALDLLRVSG 249 (386)
T ss_dssp SCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCS-SCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccC-CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 754321 111111112479999999999999998865321111 1223455677788777 99985444333221
Q ss_pred ------C--CCChhhHHHHHhccccccccCCCChhHHHHHhhhcCChhHHHHHhHhccCCC-C-CccChHHHHHHH----
Q 036466 266 ------G--STDEHDWEYVRDNDIWKLRQAPDDILPALRLSYDQLPPHLKQCFAYCSIFPK-D-YEFASVHLVQLW---- 331 (727)
Q Consensus 266 ------~--~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~~~la~f~~-~-~~~~~~~l~~~w---- 331 (727)
+ .-....+....... ....+...+.++++..+.++..++.+.+ + ..+....+...+
T Consensus 250 ~~a~~~~~~~i~~~~v~~a~~~~----------~~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~ 319 (386)
T 2qby_A 250 EIAERMKDTKVKEEYVYMAKEEI----------ERDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNIC 319 (386)
T ss_dssp HHHHHTTCSSCCHHHHHHHHHHH----------HHHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHH
T ss_pred HHHHhcCCCccCHHHHHHHHHHH----------hhchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHH
Confidence 1 11122222211110 1234566778899999998888875322 1 122232222211
Q ss_pred HhcccccCCCCCchHHHHHHHHHHHHHhCCcceec
Q 036466 332 MAHGLLQSPNKNEELENIGMRYFKELCSRSFFQDL 366 (727)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 366 (727)
-..| ... ........+++.|...+++...
T Consensus 320 ~~~g-~~~-----~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 320 KKLG-VEA-----VTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp HHHT-CCC-----CCHHHHHHHHHHHHHHTSEEEE
T ss_pred HhcC-CCC-----CCHHHHHHHHHHHHhCCCEEEE
Confidence 1111 111 1124466789999999999764
No 123
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.39 E-value=2.2e-12 Score=124.14 Aligned_cols=151 Identities=17% Similarity=0.147 Sum_probs=78.5
Q ss_pred CEeecCCCCCCcccChhhcccccCceeEecccccccccc-cCCCCCCCcEEeccccCCchhhhhhccCCCCcCeeecccC
Q 036466 480 QTLNLGDCLELEELPKDIRYLVSLRMFVVTTKQKSLLES-GIGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNAC 558 (727)
Q Consensus 480 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~ 558 (727)
+.++.+++ .+..+|..+. .+|+.|++++|.+..++. .+..+++|++|++++|......+..+..+++|+.|++++|
T Consensus 14 ~~v~c~~~-~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGK-GLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTS-CCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCC-CcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 34555542 3344454332 456666666666664443 4555566666666665433333455555555555555555
Q ss_pred cCCCcCccccccCcccceeeccccccccccccccccccCCCCCCCCCCceeeEEEecCCCCCCCcchhhhcCCCCcccEE
Q 036466 559 PRLNLLPPAMKYLSSLERLIFDECESLSLSLNMEMKEEGSHHDRKNVGSHLRTLYVARLTPLLELPQWLLQGSSKTLQTL 638 (727)
Q Consensus 559 ~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~~~L~~L 638 (727)
......+..+..+++|+. |+|++|......+..+ ..+++|+.|
T Consensus 91 ~l~~l~~~~f~~l~~L~~-----------------------------------L~L~~N~l~~~~~~~~--~~l~~L~~L 133 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQL-----------------------------------LLLNANKINCLRVDAF--QDLHNLNLL 133 (220)
T ss_dssp CCCCCCTTTTTTCTTCCE-----------------------------------EECCSSCCCCCCTTTT--TTCTTCCEE
T ss_pred cCCccCHhHccCCCCCCE-----------------------------------EECCCCCCCEeCHHHc--CCCCCCCEE
Confidence 443211122233333333 3333333322223333 456677777
Q ss_pred EecCCCCccccCccCccccccccccccccccc
Q 036466 639 AIGDCPNFMALPGSLKDLEALENLVIGICPKL 670 (727)
Q Consensus 639 ~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 670 (727)
+|++|.+.+..+..+..+++|+.|++++|+..
T Consensus 134 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 134 SLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 77777655544555666777777777777654
No 124
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.38 E-value=3.1e-13 Score=134.01 Aligned_cols=144 Identities=17% Similarity=0.156 Sum_probs=94.0
Q ss_pred CCCcceEEEecCCCccccccccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcccccCceeE
Q 036466 428 KSKSLRVLVLTNSAIEVLPRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFV 507 (727)
Q Consensus 428 ~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 507 (727)
.+..+..++++++.+..++ .+..+++|++|++++|. +..++ .+..+++|++|++++|.... ++. +..+++|+.|+
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~ 91 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSN-IQSLA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSC-CCCCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEE
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCC-cccch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEE
Confidence 3455666677777777665 46677888888888776 44555 57777888888887765443 333 77778888888
Q ss_pred ecccccccccccCCCCCCCcEEeccccCCchhhhhhccCCCCcCeeecccCcCCCcCccccccCcccceeecccc
Q 036466 508 VTTKQKSLLESGIGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNACPRLNLLPPAMKYLSSLERLIFDEC 582 (727)
Q Consensus 508 l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 582 (727)
+++|.++.++.... ++|++|++++|.. ..+ +.+..+++|+.|++++|... .++ .+..+++|+.|++++|
T Consensus 92 L~~N~l~~l~~~~~--~~L~~L~L~~N~l-~~~-~~l~~l~~L~~L~Ls~N~i~-~~~-~l~~l~~L~~L~L~~N 160 (263)
T 1xeu_A 92 VNRNRLKNLNGIPS--ACLSRLFLDNNEL-RDT-DSLIHLKNLEILSIRNNKLK-SIV-MLGFLSKLEVLDLHGN 160 (263)
T ss_dssp CCSSCCSCCTTCCC--SSCCEEECCSSCC-SBS-GGGTTCTTCCEEECTTSCCC-BCG-GGGGCTTCCEEECTTS
T ss_pred CCCCccCCcCcccc--CcccEEEccCCcc-CCC-hhhcCcccccEEECCCCcCC-CCh-HHccCCCCCEEECCCC
Confidence 88887776554333 7777777777643 333 34667777777777776543 333 4555566666666554
No 125
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.38 E-value=1e-11 Score=120.08 Aligned_cols=190 Identities=13% Similarity=0.064 Sum_probs=121.5
Q ss_pred CCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHH
Q 036466 48 PSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKI 127 (727)
Q Consensus 48 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 127 (727)
...++||++.++.+.+++... ..+.+.|+|++|+|||++|+.++........-...+.++.....+...+. ..
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 88 (226)
T 2chg_A 16 LDEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVR-HK 88 (226)
T ss_dssp GGGCCSCHHHHHHHHHHHHTT------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHH-HH
T ss_pred HHHHcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHH-HH
Confidence 356899999999999999763 22349999999999999999998742111111223344444333332222 22
Q ss_pred HHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEEecCchHHH-HHHhhcCC
Q 036466 128 INSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNKVA-LIMATMRG 206 (727)
Q Consensus 128 l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~iliTsr~~~~~-~~~~~~~~ 206 (727)
+..+..... ...+++.+|||||++.........+...+.....+.++|+||+..... .... ..
T Consensus 89 ~~~~~~~~~--------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~--~r 152 (226)
T 2chg_A 89 IKEFARTAP--------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQ--SR 152 (226)
T ss_dssp HHHHHTSCC--------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH--TT
T ss_pred HHHHhcccC--------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHH--Hh
Confidence 222211000 012468899999998887666666776665555677888888764311 1111 12
Q ss_pred CCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchHHHHHHHhh
Q 036466 207 TTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVRTVGSL 263 (727)
Q Consensus 207 ~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~ 263 (727)
...+.+.+++.++..+++.+.+...+.. ...+.+..+++.++|+|..+..+...
T Consensus 153 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~l~~~~~g~~r~l~~~l~~ 206 (226)
T 2chg_A 153 CAVFRFKPVPKEAMKKRLLEICEKEGVK---ITEDGLEALIYISGGDFRKAINALQG 206 (226)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHHTCC---BCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CceeecCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3589999999999999999876443322 22456788999999999966554433
No 126
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.38 E-value=2.1e-12 Score=134.74 Aligned_cols=128 Identities=16% Similarity=0.123 Sum_probs=98.9
Q ss_pred ceEEEecCCCccccccccCCCCcCcEEeccCCccccccCcccc-CCCCCCEeecCCCCCCcccChhhcccccCceeEecc
Q 036466 432 LRVLVLTNSAIEVLPRKMGNLKQLRHLDLSGNRKIKKLPNSIC-ELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTT 510 (727)
Q Consensus 432 L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 510 (727)
-++++++++.+..+|..+. ..++.|++++|.+.+..+..+. .+++|++|++++|.+....+..+..+++|++|++++
T Consensus 20 ~~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TTEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 3688999999988887664 4688999999985544445565 889999999998776666667788889999999999
Q ss_pred cccccccc-cCCCCCCCcEEeccccCCchhhhhhccCCCCcCeeecccCcCC
Q 036466 511 KQKSLLES-GIGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNACPRL 561 (727)
Q Consensus 511 ~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~ 561 (727)
|.+..++. .+..+++|++|++++|......+..+..+++|+.|++++|...
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~ 149 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS 149 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC
Confidence 98886554 5778888888888887655444667778888888888877653
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.35 E-value=2e-12 Score=118.76 Aligned_cols=131 Identities=19% Similarity=0.173 Sum_probs=105.9
Q ss_pred cCCCcceEEEecCCCcc--ccccccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcccccCc
Q 036466 427 SKSKSLRVLVLTNSAIE--VLPRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLR 504 (727)
Q Consensus 427 ~~~~~L~~L~l~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 504 (727)
...++|+.|++++|.+. .+|..+..+++|++|++++|.+. .+ ..+..+++|++|++++|.....+|..+.++++|+
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~-~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCC-CC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCC-Ch-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 34578999999999998 88888889999999999999844 44 6688899999999999887776888888899999
Q ss_pred eeEeccccccccc--ccCCCCCCCcEEeccccCCchhhhh----hccCCCCcCeeecccCcC
Q 036466 505 MFVVTTKQKSLLE--SGIGCLSSLRFLMISNCGNLEYLFE----DIDQLSVLRSLVVNACPR 560 (727)
Q Consensus 505 ~L~l~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~l~~----~l~~l~~L~~L~l~~~~~ 560 (727)
+|++++|.++.++ ..+..+++|++|++++|.. ..++. .+..+++|+.|++++|..
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l-~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEV-TNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGG-GTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcC-cchHHHHHHHHHhCccCcEecCCCCCh
Confidence 9999999988655 5677888888888888643 33333 677788888888887754
No 128
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.35 E-value=3.7e-12 Score=126.18 Aligned_cols=148 Identities=19% Similarity=0.170 Sum_probs=121.6
Q ss_pred hcCCCcceEEEecCCCccccccccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcccccCce
Q 036466 426 ISKSKSLRVLVLTNSAIEVLPRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRM 505 (727)
Q Consensus 426 ~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 505 (727)
+..+++|++|++++|.+..++ .+..+++|++|++++|. +..+++ +..+++|++|++++|.... +|... . .+|+.
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~~L~L~~N~l~~-l~~~~-~-~~L~~ 110 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLEELSVNRNRLKN-LNGIP-S-ACLSR 110 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEECCSSCCSC-CTTCC-C-SSCCE
T ss_pred hhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCc-cCCChh-hccCCCCCEEECCCCccCC-cCccc-c-CcccE
Confidence 567899999999999999887 68889999999999998 455555 8899999999999876544 44333 3 89999
Q ss_pred eEecccccccccccCCCCCCCcEEeccccCCchhhhhhccCCCCcCeeecccCcCCCcCccccccCcccceeecccccc
Q 036466 506 FVVTTKQKSLLESGIGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNACPRLNLLPPAMKYLSSLERLIFDECES 584 (727)
Q Consensus 506 L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 584 (727)
|++++|.++.++ .+..+++|++|++++|.. ..++ .+..+++|+.|++++|..... ..+..+++|+.|++++|+.
T Consensus 111 L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i-~~~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 111 LFLDNNELRDTD-SLIHLKNLEILSIRNNKL-KSIV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp EECCSSCCSBSG-GGTTCTTCCEEECTTSCC-CBCG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEE
T ss_pred EEccCCccCCCh-hhcCcccccEEECCCCcC-CCCh-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcc
Confidence 999999999765 588999999999999754 4454 688899999999999877544 5677888899999888743
No 129
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.33 E-value=5.3e-12 Score=122.32 Aligned_cols=132 Identities=23% Similarity=0.261 Sum_probs=112.6
Q ss_pred CCcceEEEecCCCcccc-ccccCCCCcCcEEeccCCccccccC-ccccCCCCCCEeecCCCCCCcccChhhcccccCcee
Q 036466 429 SKSLRVLVLTNSAIEVL-PRKMGNLKQLRHLDLSGNRKIKKLP-NSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMF 506 (727)
Q Consensus 429 ~~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 506 (727)
.++|++|++++|.+..+ |..+..+++|++|++++|.+ +.+| ..+..+++|++|++++|.+....+..+..+++|+.|
T Consensus 39 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L 117 (229)
T 3e6j_A 39 PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKEL 117 (229)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeE
Confidence 37899999999999976 56788999999999999985 5555 557899999999999987665556668899999999
Q ss_pred EecccccccccccCCCCCCCcEEeccccCCchhhhhhccCCCCcCeeecccCcCC
Q 036466 507 VVTTKQKSLLESGIGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNACPRL 561 (727)
Q Consensus 507 ~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~ 561 (727)
++++|.+..+|..+..+++|++|++++|......+..+..+++|+.|++++|...
T Consensus 118 ~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 118 FMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp ECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred eccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 9999999999989999999999999997544333356888999999999998764
No 130
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.33 E-value=1.8e-14 Score=158.56 Aligned_cols=189 Identities=14% Similarity=0.055 Sum_probs=134.9
Q ss_pred cCCCCCCEeecCCCCCCcccChhhcccccCceeEecccccc-cccccCCCCCCCcEEeccccCCchhhhhhccCCCCcCe
Q 036466 474 CELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTKQKS-LLESGIGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRS 552 (727)
Q Consensus 474 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~ 552 (727)
..+++|+.|++++|. +..+|..++++.+|+.|++.+|... ..+. .+..++.....|..++.+++|+.
T Consensus 346 ~~~~~L~~L~Ls~n~-L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~-----------ll~~~~~~~~~~~~l~~l~~L~~ 413 (567)
T 1dce_A 346 ATDEQLFRCELSVEK-STVLQSELESCKELQELEPENKWCLLTIIL-----------LMRALDPLLYEKETLQYFSTLKA 413 (567)
T ss_dssp STTTTSSSCCCCHHH-HHHHHHHHHHHHHHHHHCTTCHHHHHHHHH-----------HHHHHCTGGGHHHHHHHHHHHHH
T ss_pred ccCccceeccCChhh-HHhhHHHHHHHHHHHHhccccchhhhhHHH-----------HHHhcccccCCHHHHHHHHhccc
Confidence 567899999999854 5689999999999999999766421 1110 01122333455666666677777
Q ss_pred ee-cccCcCCCcCcc------cccc--CcccceeeccccccccccccccccccCCCCCCCCCCceeeEEEecCCCCCCCc
Q 036466 553 LV-VNACPRLNLLPP------AMKY--LSSLERLIFDECESLSLSLNMEMKEEGSHHDRKNVGSHLRTLYVARLTPLLEL 623 (727)
Q Consensus 553 L~-l~~~~~~~~~~~------~l~~--l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l 623 (727)
|+ ++.|.. ..++. .+.. ...|+.|++++|.-- .++. +..+++|+.|+|++|... .+
T Consensus 414 L~~l~~n~~-~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~------------~lp~-~~~l~~L~~L~Ls~N~l~-~l 478 (567)
T 1dce_A 414 VDPMRAAYL-DDLRSKFLLENSVLKMEYADVRVLHLAHKDLT------------VLCH-LEQLLLVTHLDLSHNRLR-AL 478 (567)
T ss_dssp HCGGGHHHH-HHHHHHHHHHHHHHHHHHTTCSEEECTTSCCS------------SCCC-GGGGTTCCEEECCSSCCC-CC
T ss_pred Ccchhhccc-chhhhhhhhcccccccCccCceEEEecCCCCC------------CCcC-ccccccCcEeecCccccc-cc
Confidence 66 333211 11110 0111 125889999987321 2344 677889999999999654 78
Q ss_pred chhhhcCCCCcccEEEecCCCCccccCccCcccccccccccccccccccc-CccCCCCCccCeeeccCCcc
Q 036466 624 PQWLLQGSSKTLQTLAIGDCPNFMALPGSLKDLEALENLVIGICPKLSSL-PEGMHHLTTLKTLAIEECPA 693 (727)
Q Consensus 624 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l-~~~l~~l~~L~~L~l~~c~~ 693 (727)
|..+ +.+++|+.|+|++|.+.+ +| .+..+++|+.|+|++|.+.+.. |..++.+++|+.|++++|+.
T Consensus 479 p~~~--~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l 545 (567)
T 1dce_A 479 PPAL--AALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545 (567)
T ss_dssp CGGG--GGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred chhh--hcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcC
Confidence 8777 678999999999997654 77 7999999999999999866554 88899999999999999973
No 131
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.32 E-value=2.4e-12 Score=115.60 Aligned_cols=126 Identities=20% Similarity=0.159 Sum_probs=91.3
Q ss_pred CCCcceEEEecCCCcc--ccccccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcccccCce
Q 036466 428 KSKSLRVLVLTNSAIE--VLPRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRM 505 (727)
Q Consensus 428 ~~~~L~~L~l~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 505 (727)
..++|+.|++++|.+. .+|..+..+++|++|++++|.+.+ + ..+..+++|++|++++|...+.+|..+..+++|++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS-I-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCC-C-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCC-c-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 3478899999999887 778778888999999998887443 3 56778888899999887776667777777888888
Q ss_pred eEeccccccccc--ccCCCCCCCcEEeccccCCchhhh----hhccCCCCcCeeecc
Q 036466 506 FVVTTKQKSLLE--SGIGCLSSLRFLMISNCGNLEYLF----EDIDQLSVLRSLVVN 556 (727)
Q Consensus 506 L~l~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~l~----~~l~~l~~L~~L~l~ 556 (727)
|++++|.++..+ ..+..+++|++|++++|.. ..++ ..+..+++|+.|+++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV-TNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGG-GGSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcc-cchHHHHHHHHHHCCCcccccCC
Confidence 888888777543 5566666777777766532 2232 245556666666554
No 132
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.31 E-value=9.5e-12 Score=119.64 Aligned_cols=132 Identities=20% Similarity=0.173 Sum_probs=113.4
Q ss_pred CcceEEEecCCCcccccc--ccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcccccCceeE
Q 036466 430 KSLRVLVLTNSAIEVLPR--KMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFV 507 (727)
Q Consensus 430 ~~L~~L~l~~~~~~~l~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 507 (727)
+.++.|++++|.+..++. .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|+.|+
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 111 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM 111 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEE
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEE
Confidence 467899999999997743 478999999999999986555555799999999999999887776677799999999999
Q ss_pred ecccccccc-cccCCCCCCCcEEeccccCCchhhhhhccCCCCcCeeecccCcCC
Q 036466 508 VTTKQKSLL-ESGIGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNACPRL 561 (727)
Q Consensus 508 l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~ 561 (727)
+++|.+..+ +..+..+++|++|++++|......|..+..+++|+.|++++|.+.
T Consensus 112 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 112 LRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 999999955 567899999999999998665555788999999999999998764
No 133
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.29 E-value=8.3e-13 Score=150.10 Aligned_cols=118 Identities=21% Similarity=0.232 Sum_probs=58.5
Q ss_pred ccccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcccccCceeEecccccccccccCCCCCC
Q 036466 446 PRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTKQKSLLESGIGCLSS 525 (727)
Q Consensus 446 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~ 525 (727)
+..+..+.+|+.|+|++|. +..+|..+..+++|++|+|++|.+. .+|..+.++++|+.|+|++|.++.+|..++.+++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~ 294 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQ-IFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQ 294 (727)
T ss_dssp -----CCCCCCEEECTTSC-CSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTT
T ss_pred hhhhccCCCCcEEECCCCC-CCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCC
Confidence 3344555555555555555 2244444445555555555554433 4555555555555555555555555555555555
Q ss_pred CcEEeccccCCchhhhhhccCCCCcCeeecccCcCCCcCcc
Q 036466 526 LRFLMISNCGNLEYLFEDIDQLSVLRSLVVNACPRLNLLPP 566 (727)
Q Consensus 526 L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~ 566 (727)
|++|+|++|. +..+|..++.+++|+.|+|++|.+.+.+|.
T Consensus 295 L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~ 334 (727)
T 4b8c_D 295 LKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLEKQFLK 334 (727)
T ss_dssp CSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCCSHHHH
T ss_pred CCEEECCCCC-CCccChhhhcCCCccEEeCCCCccCCCChH
Confidence 5555555542 234454555555555555555554444443
No 134
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.29 E-value=1e-11 Score=129.51 Aligned_cols=154 Identities=16% Similarity=0.109 Sum_probs=122.0
Q ss_pred CcceEEEecCCCccccccc-cC-CCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcccccCceeE
Q 036466 430 KSLRVLVLTNSAIEVLPRK-MG-NLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFV 507 (727)
Q Consensus 430 ~~L~~L~l~~~~~~~l~~~-~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 507 (727)
+.++.|+|++|.+..++.. +. .+++|++|++++|.+....+..+..+++|++|+|++|.+....+..+..+.+|+.|+
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 118 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL 118 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence 4689999999999987665 55 899999999999986555556789999999999999877666666789999999999
Q ss_pred ecccccccc-cccCCCCCCCcEEeccccCCchhhhhh-c---cCCCCcCeeecccCcCCCcCccccccCcc--cceeecc
Q 036466 508 VTTKQKSLL-ESGIGCLSSLRFLMISNCGNLEYLFED-I---DQLSVLRSLVVNACPRLNLLPPAMKYLSS--LERLIFD 580 (727)
Q Consensus 508 l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~l~~~-l---~~l~~L~~L~l~~~~~~~~~~~~l~~l~~--L~~L~l~ 580 (727)
+++|.+..+ +..+..+++|++|++++|.. ..+|.. + ..+++|+.|++++|......+..+..++. ++.|+++
T Consensus 119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l-~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~ 197 (361)
T 2xot_A 119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQI-SRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLH 197 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCC-CSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECC
T ss_pred CCCCcccEECHHHhCCcccCCEEECCCCcC-CeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEec
Confidence 999999955 56789999999999999754 445544 3 57899999999998775433345666665 4788888
Q ss_pred cccc
Q 036466 581 ECES 584 (727)
Q Consensus 581 ~~~~ 584 (727)
+|+.
T Consensus 198 ~N~~ 201 (361)
T 2xot_A 198 NNPL 201 (361)
T ss_dssp SSCE
T ss_pred CCCc
Confidence 8654
No 135
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.25 E-value=3.5e-11 Score=112.99 Aligned_cols=128 Identities=15% Similarity=0.089 Sum_probs=103.8
Q ss_pred eEEEecCCCccccccccCCCCcCcEEeccCCccccccCc-cccCCCCCCEeecCCCCCCcccChhhcccccCceeEeccc
Q 036466 433 RVLVLTNSAIEVLPRKMGNLKQLRHLDLSGNRKIKKLPN-SICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTK 511 (727)
Q Consensus 433 ~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 511 (727)
++++++++.+..+|..+.. ++++|++++|.+.+..+. .+..+++|++|++++|.+.+..|..+..+++|+.|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 7889999999988886654 899999999984433332 3788999999999998877777888999999999999999
Q ss_pred ccccccc-cCCCCCCCcEEeccccCCchhhhhhccCCCCcCeeecccCcCCC
Q 036466 512 QKSLLES-GIGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNACPRLN 562 (727)
Q Consensus 512 ~~~~~~~-~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~ 562 (727)
.++.++. .+..+++|++|++++|......|..+..+++|+.|++++|.+..
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 9985554 47888999999999887666667788888899999998887643
No 136
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.24 E-value=1.1e-11 Score=111.36 Aligned_cols=128 Identities=22% Similarity=0.156 Sum_probs=102.1
Q ss_pred CCCcCcEEeccCCccc-cccCccccCCCCCCEeecCCCCCCcccChhhcccccCceeEeccccccc-ccccCCCCCCCcE
Q 036466 451 NLKQLRHLDLSGNRKI-KKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTKQKSL-LESGIGCLSSLRF 528 (727)
Q Consensus 451 ~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~l~~L~~ 528 (727)
..++|+.|++++|.+. +.+|..+..+++|++|++++|..... ..+..+++|+.|++++|.++. +|..+..+++|++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 3478999999999865 57888888999999999998765544 678889999999999999986 6666677899999
Q ss_pred EeccccCCch-hhhhhccCCCCcCeeecccCcCCCcCc---cccccCcccceeecc
Q 036466 529 LMISNCGNLE-YLFEDIDQLSVLRSLVVNACPRLNLLP---PAMKYLSSLERLIFD 580 (727)
Q Consensus 529 L~l~~~~~~~-~l~~~l~~l~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~ 580 (727)
|++++|.... ..+..+..+++|+.|++++|...+..+ ..+..+++|+.|+++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 9999976443 234778899999999999987654333 367778888888775
No 137
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.22 E-value=1.6e-11 Score=112.69 Aligned_cols=131 Identities=21% Similarity=0.195 Sum_probs=97.8
Q ss_pred CCCcCcEEeccCCccc-cccCccccCCCCCCEeecCCCCCCcccChhhcccccCceeEeccccccc-ccccCCCCCCCcE
Q 036466 451 NLKQLRHLDLSGNRKI-KKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTKQKSL-LESGIGCLSSLRF 528 (727)
Q Consensus 451 ~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~l~~L~~ 528 (727)
..++|+.|++++|.+. +.+|..+..+++|++|++++|.... + ..+..+++|+.|++++|.+.. +|..+..+++|++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS-V-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCC-C-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCC-h-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 3477889999888855 4778777888889999998876443 3 677788888888888888886 5555566888888
Q ss_pred EeccccCCchhhh--hhccCCCCcCeeecccCcCCCcCc---cccccCcccceeecccccc
Q 036466 529 LMISNCGNLEYLF--EDIDQLSVLRSLVVNACPRLNLLP---PAMKYLSSLERLIFDECES 584 (727)
Q Consensus 529 L~l~~~~~~~~l~--~~l~~l~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~~~~~ 584 (727)
|++++|.. ..++ ..+..+++|+.|++++|......+ ..+..+++|+.|++++|..
T Consensus 100 L~Ls~N~l-~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 100 LNLSGNKL-KDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp EECBSSSC-CSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred EeccCCcc-CcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 88888743 4433 677888888888888887644333 2677788888888887744
No 138
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.22 E-value=6.7e-12 Score=142.64 Aligned_cols=123 Identities=21% Similarity=0.249 Sum_probs=105.9
Q ss_pred hhhhhhcCCCcceEEEecCCCccccccccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhccc
Q 036466 421 FVTSCISKSKSLRVLVLTNSAIEVLPRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYL 500 (727)
Q Consensus 421 ~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l 500 (727)
..+..+..++.|+.|+|++|.+..+|..+..+++|++|+|++|.+. .+|..++.+++|++|+|++|.+. .+|..+.++
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 292 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC 292 (727)
T ss_dssp -------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence 4567788999999999999999999988889999999999999854 89999999999999999998766 889999999
Q ss_pred ccCceeEecccccccccccCCCCCCCcEEeccccCCchhhhhhcc
Q 036466 501 VSLRMFVVTTKQKSLLESGIGCLSSLRFLMISNCGNLEYLFEDID 545 (727)
Q Consensus 501 ~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~ 545 (727)
.+|++|++++|.++.+|..++.+++|++|+|++|.....+|..+.
T Consensus 293 ~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 337 (727)
T 4b8c_D 293 FQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILT 337 (727)
T ss_dssp TTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHH
T ss_pred CCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHh
Confidence 999999999999999998999999999999999877666665543
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.21 E-value=2.6e-11 Score=112.19 Aligned_cols=132 Identities=21% Similarity=0.146 Sum_probs=94.3
Q ss_pred hhcCCCcceEEEecCCCccccccccCCCC-cCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcccccC
Q 036466 425 CISKSKSLRVLVLTNSAIEVLPRKMGNLK-QLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSL 503 (727)
Q Consensus 425 ~~~~~~~L~~L~l~~~~~~~l~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 503 (727)
.+..+++|+.|++++|.+..++. +..+. +|++|++++|.+. .+ +.+..+++|++|++++|.+....+..+..+++|
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~-~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCC-EE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred hcCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCC-cc-cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 35678899999999999887754 44444 8999999988744 34 567888889999998876554433445788888
Q ss_pred ceeEecccccccccc--cCCCCCCCcEEeccccCCchhhhh----hccCCCCcCeeecccCcC
Q 036466 504 RMFVVTTKQKSLLES--GIGCLSSLRFLMISNCGNLEYLFE----DIDQLSVLRSLVVNACPR 560 (727)
Q Consensus 504 ~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~l~~----~l~~l~~L~~L~l~~~~~ 560 (727)
+.|++++|.++.++. .+..+++|++|++++|.. ..++. .+..+++|+.|++++|..
T Consensus 91 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i-~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 91 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPV-TNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGG-GGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCC-CCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 888888888876665 566777777777777643 33443 266667777777766543
No 140
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.20 E-value=6.3e-11 Score=121.82 Aligned_cols=239 Identities=13% Similarity=0.068 Sum_probs=118.0
Q ss_pred CCcceEEEecCCCccccccccCCCCcCcEEeccCCccccccC-ccccC--------CCCCCEeecCCCCCCcccChhhcc
Q 036466 429 SKSLRVLVLTNSAIEVLPRKMGNLKQLRHLDLSGNRKIKKLP-NSICE--------LQSLQTLNLGDCLELEELPKDIRY 499 (727)
Q Consensus 429 ~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~--------l~~L~~L~l~~~~~~~~~~~~l~~ 499 (727)
+++|++|+|++|.+......-..++.++.+.+..+. +| ..|.. |++|+.|++.. ....--+..|.+
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~----I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~ 122 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANF----VPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKG 122 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTE----ECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTT
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccc----cCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhc
Confidence 789999999999987211111122223344443332 22 23445 77788887765 333333356777
Q ss_pred cccCceeEeccccccccc-ccCCCCCCCcEEeccccCC---chhh-hhhccCCCCcC-----------------------
Q 036466 500 LVSLRMFVVTTKQKSLLE-SGIGCLSSLRFLMISNCGN---LEYL-FEDIDQLSVLR----------------------- 551 (727)
Q Consensus 500 l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~---~~~l-~~~l~~l~~L~----------------------- 551 (727)
|.+|+.|++..|.+..++ ..+..+.++..+....... ...+ ..++..+..|+
T Consensus 123 ~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~ 202 (329)
T 3sb4_A 123 CDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPR 202 (329)
T ss_dssp CTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGG
T ss_pred CcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCcc
Confidence 778888888777765333 3455555555554433100 0000 11222333333
Q ss_pred ---eeecccCcCCCcCccccccCcccceeeccccccccccccccccccCCCCCCCCCCceeeEEEecCCCCCCCcchhhh
Q 036466 552 ---SLVVNACPRLNLLPPAMKYLSSLERLIFDECESLSLSLNMEMKEEGSHHDRKNVGSHLRTLYVARLTPLLELPQWLL 628 (727)
Q Consensus 552 ---~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~ 628 (727)
.+.+.++-....+......+++|+++++++|...++. ...+.+|.+|++|+|..+ +..++...+
T Consensus 203 ~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~-----------~~aF~~~~~L~~l~l~~n--i~~I~~~aF 269 (329)
T 3sb4_A 203 DINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIP-----------DFTFAQKKYLLKIKLPHN--LKTIGQRVF 269 (329)
T ss_dssp GCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEEC-----------TTTTTTCTTCCEEECCTT--CCEECTTTT
T ss_pred ccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceec-----------HhhhhCCCCCCEEECCcc--cceehHHHh
Confidence 3333221100000000112556666666654322221 234556666777776664 344433321
Q ss_pred cCCCCccc-EEEecCCCCccccCccCccccccccccccccccccccCccCCCCCccCeee
Q 036466 629 QGSSKTLQ-TLAIGDCPNFMALPGSLKDLEALENLVIGICPKLSSLPEGMHHLTTLKTLA 687 (727)
Q Consensus 629 ~~~~~~L~-~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~ 687 (727)
..|++|+ .+++.+ .....-+..|.++++|+.|++.+|....--+..+.++++|+.++
T Consensus 270 -~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 270 -SNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp -TTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred -hCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 4566676 777765 22222345566777777777665543322234566666666654
No 141
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.19 E-value=8.7e-11 Score=110.21 Aligned_cols=125 Identities=19% Similarity=0.297 Sum_probs=90.2
Q ss_pred eEEEecCCCccccccccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcccccCceeEecccc
Q 036466 433 RVLVLTNSAIEVLPRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTKQ 512 (727)
Q Consensus 433 ~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 512 (727)
++++++++.+..+|..+. .+|+.|++++|. +..+|..+..+++|++|++++|.+....+..+..+++|+.|++++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~-i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQ-FTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSC-CCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCc-CchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 578888888888887654 578888888887 45777778888888888888877666556677888888888888888
Q ss_pred cccccc-cCCCCCCCcEEeccccCCchhhhhhccCCCCcCeeecccCcC
Q 036466 513 KSLLES-GIGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNACPR 560 (727)
Q Consensus 513 ~~~~~~-~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~ 560 (727)
++.++. .+..+++|++|++++|......+..+..+++|+.|++++|.+
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 875543 467777777777777643322223466677777777776654
No 142
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.18 E-value=1.3e-10 Score=119.24 Aligned_cols=189 Identities=15% Similarity=0.147 Sum_probs=119.2
Q ss_pred CCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHH
Q 036466 47 RPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTK 126 (727)
Q Consensus 47 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 126 (727)
....++|++..++.|.+++... ..+.+.|+|++|+|||++|+.++....-.......++++.....+. +..++
T Consensus 19 ~~~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~-~~i~~ 91 (323)
T 1sxj_B 19 VLSDIVGNKETIDRLQQIAKDG------NMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGI-DVVRN 91 (323)
T ss_dssp SGGGCCSCTHHHHHHHHHHHSC------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSH-HHHHT
T ss_pred CHHHHHCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccCh-HHHHH
Confidence 3456999999999999998762 2223899999999999999999974211111112334443332222 22222
Q ss_pred HHHHhcCCCCCCCChHHHHHHHHHHh-CCceEEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEEecCchHH-HHHHhhc
Q 036466 127 IINSVTGGNHGNLDPDRLQKVLRDSL-NGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNKV-ALIMATM 204 (727)
Q Consensus 127 ll~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~iliTsr~~~~-~~~~~~~ 204 (727)
++..+.... ..+ .+++.++|+||++.........+...+....+++.+|++|+.... .... .
T Consensus 92 ~~~~~~~~~--------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l--~ 155 (323)
T 1sxj_B 92 QIKHFAQKK--------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPL--Q 155 (323)
T ss_dssp HHHHHHHBC--------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHH--H
T ss_pred HHHHHHhcc--------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHH--H
Confidence 332221000 001 345889999999887766666666666555567788888766421 1111 1
Q ss_pred CCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchHH-HHHHH
Q 036466 205 RGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLA-VRTVG 261 (727)
Q Consensus 205 ~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla-l~~~a 261 (727)
.....+.+.+++.++..+++...+...+.. ...+.+..+++.++|.|.. +..+.
T Consensus 156 sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 156 SQCAILRYSKLSDEDVLKRLLQIIKLEDVK---YTNDGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHHHHHTCC---BCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhceEEeecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 223689999999999999998876433322 2245678899999999954 44443
No 143
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.15 E-value=2.6e-10 Score=116.97 Aligned_cols=186 Identities=16% Similarity=0.108 Sum_probs=115.6
Q ss_pred CCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHH
Q 036466 47 RPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTK 126 (727)
Q Consensus 47 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 126 (727)
....|+|++..++.+..++...... +...+.+.|+|++|+|||++|+.+++. ... ..+++++.......++.
T Consensus 10 ~~~~~ig~~~~~~~l~~~l~~~~~~-~~~~~~vll~G~~GtGKT~la~~i~~~--~~~---~~~~~~~~~~~~~~~l~-- 81 (324)
T 1hqc_A 10 TLDEYIGQERLKQKLRVYLEAAKAR-KEPLEHLLLFGPPGLGKTTLAHVIAHE--LGV---NLRVTSGPAIEKPGDLA-- 81 (324)
T ss_dssp STTTCCSCHHHHHHHHHHHHHHHHH-CSCCCCCEEECCTTCCCHHHHHHHHHH--HTC---CEEEECTTTCCSHHHHH--
T ss_pred cHHHhhCHHHHHHHHHHHHHHHHcc-CCCCCcEEEECCCCCCHHHHHHHHHHH--hCC---CEEEEeccccCChHHHH--
Confidence 4467999999999998888642100 123457999999999999999999873 221 22344443322221111
Q ss_pred HHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCChhhHHHHHHhhcCCC------------------CCCEE
Q 036466 127 IINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLGGA------------------EGSKI 188 (727)
Q Consensus 127 ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~------------------~~~~i 188 (727)
..+...+ .++.+|+||+++.........+...+.... ++..+
T Consensus 82 -------------------~~l~~~~-~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~ 141 (324)
T 1hqc_A 82 -------------------AILANSL-EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTL 141 (324)
T ss_dssp -------------------HHHTTTC-CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEE
T ss_pred -------------------HHHHHhc-cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEE
Confidence 1111101 356799999999887655555655554221 24556
Q ss_pred EEecCchHHH-HHHhhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchHHHHHHHhhh
Q 036466 189 LVTTRSNKVA-LIMATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVRTVGSLL 264 (727)
Q Consensus 189 liTsr~~~~~-~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l 264 (727)
|.+|...... ..+ .......+.+.+++.+|..+++.+.+...+.. ...+.+..+++.++|+|..+..+...+
T Consensus 142 i~~t~~~~~~~~~l-~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~---~~~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 142 IGATTRPGLITAPL-LSRFGIVEHLEYYTPEELAQGVMRDARLLGVR---ITEEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp EEEESCCSSCSCST-TTTCSCEEECCCCCHHHHHHHHHHHHHTTTCC---CCHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred EEeCCCcccCCHHH-HhcccEEEecCCCCHHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 6666543211 000 11112578999999999999998876443322 234667889999999999887776555
No 144
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.11 E-value=2.6e-10 Score=106.95 Aligned_cols=125 Identities=18% Similarity=0.101 Sum_probs=97.4
Q ss_pred CcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccCh-hhcccccCceeEecccccccc-cccCCCCCCCcEEecc
Q 036466 455 LRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPK-DIRYLVSLRMFVVTTKQKSLL-ESGIGCLSSLRFLMIS 532 (727)
Q Consensus 455 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~ 532 (727)
.+.++++++. ++.+|..+.. +|++|++++|.+....+. .+..+++|++|++++|.++.+ |..+..+++|++|+++
T Consensus 10 ~~~l~~s~~~-l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 10 GTTVDCTGRG-LKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TTEEECTTSC-CSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCEEEcCCCC-cCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 4788998887 5677775533 899999998765544443 488899999999999999855 5678888999999999
Q ss_pred ccCCchhhhhhccCCCCcCeeecccCcCCCcCccccccCcccceeecccc
Q 036466 533 NCGNLEYLFEDIDQLSVLRSLVVNACPRLNLLPPAMKYLSSLERLIFDEC 582 (727)
Q Consensus 533 ~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 582 (727)
+|......+..+..+++|+.|++++|...+..|..+..+++|+.|++++|
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 87655545556888899999999988877666777777888888877775
No 145
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.11 E-value=1.3e-09 Score=108.81 Aligned_cols=177 Identities=11% Similarity=0.032 Sum_probs=108.9
Q ss_pred ceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhc---C--CceEEEEecCCCCHHHHH
Q 036466 50 DIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEH---F--ELKIWICVSEDSGKRQIM 124 (727)
Q Consensus 50 ~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~---f--~~~~~~~~~~~~~~~~~~ 124 (727)
.+.||++|++++...|.....+ ..+..+.|+|++|+|||++++.++........ . -..+++++....+...++
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~--~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~ 98 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMS--SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALY 98 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT--TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcC--CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHH
Confidence 3789999999999888765322 45678999999999999999999985322111 1 134678888888888999
Q ss_pred HHHHHHhcCCCCCCCChHHHHHHHHHHh---CCceEEEEEcCCCCCChhhHHHHHHhhc---CCCCCCEEEEecCch---
Q 036466 125 TKIINSVTGGNHGNLDPDRLQKVLRDSL---NGKRYLLVMDDVWNEDPRAWGELKSLLL---GGAEGSKILVTTRSN--- 195 (727)
Q Consensus 125 ~~ll~~l~~~~~~~~~~~~~~~~l~~~l---~~~~~LlvlDd~~~~~~~~~~~~~~~l~---~~~~~~~iliTsr~~--- 195 (727)
..+++++.+..............+.+.+ .+++++++||+++... .-+.+...+. .......||.++...
T Consensus 99 ~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~ 176 (318)
T 3te6_A 99 EKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNVTI 176 (318)
T ss_dssp HHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSCCC
T ss_pred HHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCcccc
Confidence 9999999654322222223333333332 4568999999998764 1122222221 111122333334332
Q ss_pred H--HHHHHhhcCCCCceecCCCChhhHHHHHHHhhcc
Q 036466 196 K--VALIMATMRGTTGYNLQELPYKDCLSLFMKCAFK 230 (727)
Q Consensus 196 ~--~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~ 230 (727)
. +.......-....+..++++.+|..+++.+++..
T Consensus 177 ~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 177 REQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp HHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred hhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHh
Confidence 1 1111111111257999999999999999887743
No 146
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.09 E-value=5.2e-10 Score=103.50 Aligned_cols=129 Identities=16% Similarity=0.156 Sum_probs=94.5
Q ss_pred cceEEEecCCCccccccccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcccccCceeEecc
Q 036466 431 SLRVLVLTNSAIEVLPRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTT 510 (727)
Q Consensus 431 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 510 (727)
..+.++++++.+..+|..+. ++|+.|++++|.+.+..+..+..+++|++|++++|......+..+..+++|+.|++++
T Consensus 8 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp ETTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 35678888888887776543 6888899988885543344567888889999888766544445578888888888888
Q ss_pred ccccccccc-CCCCCCCcEEeccccCCchhhhh-hccCCCCcCeeecccCcCCC
Q 036466 511 KQKSLLESG-IGCLSSLRFLMISNCGNLEYLFE-DIDQLSVLRSLVVNACPRLN 562 (727)
Q Consensus 511 ~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~l~~-~l~~l~~L~~L~l~~~~~~~ 562 (727)
|.++.++.. +..+++|++|++++|.. ..++. .+..+++|+.|++++|....
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcc-eEeCHHHhcCCcccCEEEecCCCeec
Confidence 888866543 57788888888888644 34444 45778888888888886643
No 147
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.08 E-value=1.5e-10 Score=106.96 Aligned_cols=131 Identities=18% Similarity=0.222 Sum_probs=102.1
Q ss_pred ccCCCCcCcEEeccCCccccccCccccCCC-CCCEeecCCCCCCcccChhhcccccCceeEecccccccccccC-CCCCC
Q 036466 448 KMGNLKQLRHLDLSGNRKIKKLPNSICELQ-SLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTKQKSLLESGI-GCLSS 525 (727)
Q Consensus 448 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~l~~ 525 (727)
.+..+.+|+.|++++|.+ ..+|. +..+. +|++|++++|.+.+ + ..+..+++|+.|++++|.++.++..+ ..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l-~~i~~-~~~~~~~L~~L~Ls~N~l~~-~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKI-PVIEN-LGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCC-CSCCC-GGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCC-chhHH-hhhcCCCCCEEECCCCCCCc-c-cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 356688999999999984 45655 44444 99999999876554 3 57888999999999999999777554 78899
Q ss_pred CcEEeccccCCchhhhh--hccCCCCcCeeecccCcCCCcCccc----cccCcccceeecccccc
Q 036466 526 LRFLMISNCGNLEYLFE--DIDQLSVLRSLVVNACPRLNLLPPA----MKYLSSLERLIFDECES 584 (727)
Q Consensus 526 L~~L~l~~~~~~~~l~~--~l~~l~~L~~L~l~~~~~~~~~~~~----l~~l~~L~~L~l~~~~~ 584 (727)
|++|++++|.. ..++. .+..+++|+.|++++|... .+|.. +..+++|+.|+++.|+.
T Consensus 90 L~~L~L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 90 LTELILTNNSL-VELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CCEEECCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCEEECCCCcC-CcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 99999999754 55665 7888999999999998764 45553 77788888888887643
No 148
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.06 E-value=5.2e-10 Score=114.96 Aligned_cols=193 Identities=12% Similarity=0.064 Sum_probs=120.0
Q ss_pred CCCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHH
Q 036466 46 VRPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMT 125 (727)
Q Consensus 46 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 125 (727)
.....++|+++.++.+..++... ..+.+.++|++|+|||++|+.++........-...+.++.....+. +...
T Consensus 22 ~~~~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~-~~~~ 94 (327)
T 1iqp_A 22 QRLDDIVGQEHIVKRLKHYVKTG------SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGI-NVIR 94 (327)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHT------CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHH-HTTH
T ss_pred CCHHHhhCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCch-HHHH
Confidence 33456999999999999998762 2334999999999999999999974211110011233333221111 1111
Q ss_pred HHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEEecCchHH-HHHHhhc
Q 036466 126 KIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNKV-ALIMATM 204 (727)
Q Consensus 126 ~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~iliTsr~~~~-~~~~~~~ 204 (727)
..+..+.... ....+++.++|+|+++.........+...+.....++++|+|+..... ......
T Consensus 95 ~~~~~~~~~~--------------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~s- 159 (327)
T 1iqp_A 95 EKVKEFARTK--------------PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQS- 159 (327)
T ss_dssp HHHHHHHHSC--------------CGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHH-
T ss_pred HHHHHHHhhC--------------CcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHh-
Confidence 1111110000 011256789999999888766777777777655567888888865421 111111
Q ss_pred CCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchHHHHHHHhhh
Q 036466 205 RGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVRTVGSLL 264 (727)
Q Consensus 205 ~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l 264 (727)
....+.+.+++.++..+++...+...+. ....+.+..+++.++|.|..+..+...+
T Consensus 160 -r~~~~~~~~l~~~~~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 160 -RCAIFRFRPLRDEDIAKRLRYIAENEGL---ELTEEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp -TEEEEECCCCCHHHHHHHHHHHHHTTTC---EECHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -hCcEEEecCCCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 1257899999999999999887644332 2334667889999999998765544443
No 149
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.04 E-value=7.2e-10 Score=103.90 Aligned_cols=107 Identities=25% Similarity=0.290 Sum_probs=95.5
Q ss_pred CcceEEEecCCCccccccccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcccccCceeEec
Q 036466 430 KSLRVLVLTNSAIEVLPRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVT 509 (727)
Q Consensus 430 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 509 (727)
++|+.|++++|.+..+|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|+.|+++
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 58999999999999999999999999999999999665556679999999999999988777777789999999999999
Q ss_pred ccccccccc-cCCCCCCCcEEeccccCC
Q 036466 510 TKQKSLLES-GIGCLSSLRFLMISNCGN 536 (727)
Q Consensus 510 ~~~~~~~~~-~~~~l~~L~~L~l~~~~~ 536 (727)
+|.++.++. .+..+++|+.|++.+|..
T Consensus 111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 111 GNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 999997776 478899999999999753
No 150
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.03 E-value=2.7e-09 Score=111.80 Aligned_cols=198 Identities=13% Similarity=0.123 Sum_probs=119.1
Q ss_pred CCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHH
Q 036466 48 PSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKI 127 (727)
Q Consensus 48 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 127 (727)
...++||+..++.|..++... ...+.+.|+|++|+||||+|+.++........+.. ..+.. ......+
T Consensus 15 ~~~~vg~~~~~~~L~~~l~~~-----~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~---~~~~~----~~~~~~~ 82 (373)
T 1jr3_A 15 FADVVGQEHVLTALANGLSLG-----RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA---TPCGV----CDNCREI 82 (373)
T ss_dssp TTTSCSCHHHHHHHHHHHHHT-----CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCS---SCCSS----SHHHHHH
T ss_pred hhhccCcHHHHHHHHHHHHhC-----CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC---CCCcc----cHHHHHH
Confidence 346999999999999999763 23457899999999999999999874221111100 00000 0001111
Q ss_pred HHHhcC-----CCCCCCChHHHHHHHHHHh----CCceEEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEEecCchH-H
Q 036466 128 INSVTG-----GNHGNLDPDRLQKVLRDSL----NGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNK-V 197 (727)
Q Consensus 128 l~~l~~-----~~~~~~~~~~~~~~l~~~l----~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~iliTsr~~~-~ 197 (727)
...-.. ........+...+.+.... .+++.++|+|+++..+......+...+.....+..+|++|.... +
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l 162 (373)
T 1jr3_A 83 EQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 162 (373)
T ss_dssp HTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGS
T ss_pred hccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 100000 0000011111112222211 24578999999998877777778777766555677777776432 1
Q ss_pred HHHHhhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchHHHHHHHh
Q 036466 198 ALIMATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVRTVGS 262 (727)
Q Consensus 198 ~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~ 262 (727)
..... .....+.+.+++.++..+++.+.+...+.. ...+.+..+++.++|+|..+..+..
T Consensus 163 ~~~l~--sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~---~~~~a~~~l~~~~~G~~r~~~~~l~ 222 (373)
T 1jr3_A 163 PVTIL--SRCLQFHLKALDVEQIRHQLEHILNEEHIA---HEPRALQLLARAAEGSLRDALSLTD 222 (373)
T ss_dssp CHHHH--TTSEEEECCCCCHHHHHHHHHHHHHHHTCC---BCHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred cHHHH--hheeEeeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 11111 223789999999999999998776443322 2345678899999999998776553
No 151
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.99 E-value=1.3e-11 Score=116.79 Aligned_cols=106 Identities=25% Similarity=0.328 Sum_probs=51.3
Q ss_pred hhcCCCcceEEEecCCCccccccccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcccccCc
Q 036466 425 CISKSKSLRVLVLTNSAIEVLPRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLR 504 (727)
Q Consensus 425 ~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 504 (727)
.+..+++|++|++++|.+..+| .+..+++|++|++++|. +..+|..+..+++|++|++++|.... +| .+..+++|+
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~ 118 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLR 118 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSS
T ss_pred HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCC
Confidence 4455555555555555555544 44555555555555554 22444444444555555555443222 33 344455555
Q ss_pred eeEecccccccccc--cCCCCCCCcEEecccc
Q 036466 505 MFVVTTKQKSLLES--GIGCLSSLRFLMISNC 534 (727)
Q Consensus 505 ~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~ 534 (727)
+|++++|.+..++. .+..+++|++|++++|
T Consensus 119 ~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp EEEESEEECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred EEECCCCcCCchhHHHHHhcCCCCCEEEecCC
Confidence 55555555443222 3444444555554444
No 152
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.98 E-value=1.4e-11 Score=116.49 Aligned_cols=142 Identities=26% Similarity=0.307 Sum_probs=111.7
Q ss_pred ceEEEecCC--CccccccccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcccccCceeEec
Q 036466 432 LRVLVLTNS--AIEVLPRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVT 509 (727)
Q Consensus 432 L~~L~l~~~--~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 509 (727)
++...+.+. .+..+|..+..+++|++|++++|.+ ..+| .+..+++|++|++++|... .+|..+..+++|+.|+++
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l-~~l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~ 101 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNI-EKIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWIS 101 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEE-SCCC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEE
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCC-cccc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECc
Confidence 344444433 3344555788899999999999984 4577 7889999999999987654 788888889999999999
Q ss_pred ccccccccccCCCCCCCcEEeccccCCchhhh--hhccCCCCcCeeecccCcCCCcCcc----------ccccCccccee
Q 036466 510 TKQKSLLESGIGCLSSLRFLMISNCGNLEYLF--EDIDQLSVLRSLVVNACPRLNLLPP----------AMKYLSSLERL 577 (727)
Q Consensus 510 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~--~~l~~l~~L~~L~l~~~~~~~~~~~----------~l~~l~~L~~L 577 (727)
+|.++.++ .+..+++|++|++++|... .++ ..+..+++|+.|++++|......|. .+..+++|+.|
T Consensus 102 ~N~l~~l~-~~~~l~~L~~L~l~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~L 179 (198)
T 1ds9_A 102 YNQIASLS-GIEKLVNLRVLYMSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179 (198)
T ss_dssp EEECCCHH-HHHHHHHSSEEEESEEECC-CHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEE
T ss_pred CCcCCcCC-ccccCCCCCEEECCCCcCC-chhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEE
Confidence 99999876 5788899999999997543 333 4788999999999999976544333 26778999998
Q ss_pred e
Q 036466 578 I 578 (727)
Q Consensus 578 ~ 578 (727)
+
T Consensus 180 d 180 (198)
T 1ds9_A 180 D 180 (198)
T ss_dssp C
T ss_pred C
Confidence 7
No 153
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.98 E-value=2.8e-09 Score=98.51 Aligned_cols=126 Identities=16% Similarity=0.159 Sum_probs=88.0
Q ss_pred cCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcccccCceeEeccccccccccc-CCCCCCCcEEecc
Q 036466 454 QLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTKQKSLLESG-IGCLSSLRFLMIS 532 (727)
Q Consensus 454 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~ 532 (727)
..+.++++++. +..+|..+ .++|++|++++|......+..+..+++|+.|++++|.++.++.. +..+++|++|+++
T Consensus 8 ~~~~l~~~~~~-l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 8 SGTEIRCNSKG-LTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp ETTEEECCSSC-CSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEecCCC-CccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 35778888776 55566433 36889999998776655555678888999999998888866543 5778888888888
Q ss_pred ccCCchhhhhhccCCCCcCeeecccCcCCCcCccccccCcccceeecccc
Q 036466 533 NCGNLEYLFEDIDQLSVLRSLVVNACPRLNLLPPAMKYLSSLERLIFDEC 582 (727)
Q Consensus 533 ~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 582 (727)
+|......+..+..+++|+.|++++|......+..+..+++|++|++++|
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCC
Confidence 86544333345677888888888887664333333456667777766665
No 154
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.92 E-value=5.2e-09 Score=107.03 Aligned_cols=186 Identities=13% Similarity=0.108 Sum_probs=115.8
Q ss_pred CCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcC-CceEEEEecCCCCHHHHHH
Q 036466 47 RPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHF-ELKIWICVSEDSGKRQIMT 125 (727)
Q Consensus 47 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~ 125 (727)
....++|++..++.+.+++... ..+.+.++|++|+|||++|+.++.... ...+ ...+.+++....+..
T Consensus 15 ~~~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~---- 83 (319)
T 2chq_A 15 TLDEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGID---- 83 (319)
T ss_dssp SGGGSCSCHHHHHHHHTTTTTT------CCCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTCTT----
T ss_pred CHHHHhCCHHHHHHHHHHHhCC------CCCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccChH----
Confidence 3456899999999999888652 222389999999999999999987421 1111 112334433211110
Q ss_pred HHHHHhcCCCCCCCChHHHHHHHHHH--h-CCceEEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEEecCchH-HHHHH
Q 036466 126 KIINSVTGGNHGNLDPDRLQKVLRDS--L-NGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNK-VALIM 201 (727)
Q Consensus 126 ~ll~~l~~~~~~~~~~~~~~~~l~~~--l-~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~iliTsr~~~-~~~~~ 201 (727)
........+... + .+++.++|+|+++.........+...+....+++.+|+|+.... +....
T Consensus 84 --------------~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l 149 (319)
T 2chq_A 84 --------------VVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPI 149 (319)
T ss_dssp --------------TSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHH
T ss_pred --------------HHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHH
Confidence 111111111111 1 24678999999988776555566666655556777887776543 11111
Q ss_pred hhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchHHHHHHHh
Q 036466 202 ATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVRTVGS 262 (727)
Q Consensus 202 ~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~ 262 (727)
. .....+.+.+++.++..+++...+...+.. ...+.+..+++.++|++..+.....
T Consensus 150 ~--sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~---i~~~~l~~l~~~~~G~~r~~~~~l~ 205 (319)
T 2chq_A 150 Q--SRCAVFRFKPVPKEAMKKRLLEICEKEGVK---ITEDGLEALIYISGGDFRKAINALQ 205 (319)
T ss_dssp H--TTCEEEECCCCCHHHHHHHHHHHHHTTCCC---BCHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred H--hhCeEEEecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 1 223689999999999999998877543332 2346678899999999986554443
No 155
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.92 E-value=4.2e-08 Score=102.92 Aligned_cols=211 Identities=11% Similarity=0.123 Sum_probs=90.3
Q ss_pred cCcEEeccCCccccccC-ccccCCCCCCEeecCCCCCCcccChhhcccccCceeEecccccccccccCCCCCCCcEEecc
Q 036466 454 QLRHLDLSGNRKIKKLP-NSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTKQKSLLESGIGCLSSLRFLMIS 532 (727)
Q Consensus 454 ~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~ 532 (727)
+|+.+.+..+ +..++ .+|.+ .+|+.+.+.. ....--+..|.+|.+|+.+++..|.+..++.....+++|+.+.+.
T Consensus 136 ~L~~i~l~~~--i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp 211 (401)
T 4fdw_A 136 QIAKVVLNEG--LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLP 211 (401)
T ss_dssp CCSEEECCTT--CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECC
T ss_pred CccEEEeCCC--ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeC
Confidence 4555555433 22222 23333 2455555543 211122244555555555555555555444433334555555554
Q ss_pred ccCCchhh-hhhccCCCCcCeeecccCcCCCcCc-cccccCcccceeeccccccccccccccccccCCCCCCCCCCceee
Q 036466 533 NCGNLEYL-FEDIDQLSVLRSLVVNACPRLNLLP-PAMKYLSSLERLIFDECESLSLSLNMEMKEEGSHHDRKNVGSHLR 610 (727)
Q Consensus 533 ~~~~~~~l-~~~l~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~ 610 (727)
.+ +..+ ..++..|++|+.+.+..+ +..++ .++.+ .+|+.+.+... ++.. -...+..|++|+
T Consensus 212 ~~--l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~~--i~~I----------~~~aF~~c~~L~ 274 (401)
T 4fdw_A 212 VT--LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLPNG--VTNI----------ASRAFYYCPELA 274 (401)
T ss_dssp TT--CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEETT--CCEE----------CTTTTTTCTTCC
T ss_pred Cc--hheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeCCC--ccEE----------ChhHhhCCCCCC
Confidence 31 2222 234555555555555432 12222 22222 44555554321 1000 023344555555
Q ss_pred EEEecCCCCC----CCcchhhhcCCCCcccEEEecCCCCcccc-CccCccccccccccccccccccccC-ccCCCCCccC
Q 036466 611 TLYVARLTPL----LELPQWLLQGSSKTLQTLAIGDCPNFMAL-PGSLKDLEALENLVIGICPKLSSLP-EGMHHLTTLK 684 (727)
Q Consensus 611 ~L~L~~~~~~----~~l~~~~~~~~~~~L~~L~L~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~l~-~~l~~l~~L~ 684 (727)
.+++.++... ..++.... ..|++|+.+.|.++ +..+ ...|.++++|+.|.|..+ +..+. .++.++ +|+
T Consensus 275 ~l~l~~~~~~~~~~~~I~~~aF-~~c~~L~~l~l~~~--i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~-~L~ 348 (401)
T 4fdw_A 275 EVTTYGSTFNDDPEAMIHPYCL-EGCPKLARFEIPES--IRILGQGLLGGNRKVTQLTIPAN--VTQINFSAFNNT-GIK 348 (401)
T ss_dssp EEEEESSCCCCCTTCEECTTTT-TTCTTCCEECCCTT--CCEECTTTTTTCCSCCEEEECTT--CCEECTTSSSSS-CCC
T ss_pred EEEeCCccccCCcccEECHHHh-hCCccCCeEEeCCc--eEEEhhhhhcCCCCccEEEECcc--ccEEcHHhCCCC-CCC
Confidence 5555544221 01221111 34555555555522 2222 234455555555555433 22222 344555 555
Q ss_pred eeeccCC
Q 036466 685 TLAIEEC 691 (727)
Q Consensus 685 ~L~l~~c 691 (727)
.+++.+|
T Consensus 349 ~l~l~~n 355 (401)
T 4fdw_A 349 EVKVEGT 355 (401)
T ss_dssp EEEECCS
T ss_pred EEEEcCC
Confidence 5555554
No 156
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.90 E-value=5.7e-09 Score=95.86 Aligned_cols=100 Identities=18% Similarity=0.168 Sum_probs=69.2
Q ss_pred eEEEecCCCccccccccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcccccCceeEecccc
Q 036466 433 RVLVLTNSAIEVLPRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTKQ 512 (727)
Q Consensus 433 ~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 512 (727)
+.++++++.+..+|..+. .+|++|++++|.+.+..|..+..+++|++|++++|.+....+..+..+++|+.|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 678888888887777654 778888888887555556667777888888887765444333445677777777777777
Q ss_pred ccccccc-CCCCCCCcEEecccc
Q 036466 513 KSLLESG-IGCLSSLRFLMISNC 534 (727)
Q Consensus 513 ~~~~~~~-~~~l~~L~~L~l~~~ 534 (727)
+..++.. +..+++|++|++++|
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSS
T ss_pred cceeCHHHhccccCCCEEEeCCC
Confidence 7755543 566666666666665
No 157
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.90 E-value=9.9e-08 Score=100.07 Aligned_cols=247 Identities=11% Similarity=0.111 Sum_probs=167.9
Q ss_pred hhhhcCCCcceEEEecCCCcccccc-ccCCCCcCcEEeccCCcccccc-CccccCCCCCCEeecCCCCCCcccChhhccc
Q 036466 423 TSCISKSKSLRVLVLTNSAIEVLPR-KMGNLKQLRHLDLSGNRKIKKL-PNSICELQSLQTLNLGDCLELEELPKDIRYL 500 (727)
Q Consensus 423 ~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l 500 (727)
..+|.++ +|+.+.+..+ +..++. .|.. .+|+.+.+.. . +..+ +.+|.+|++|+.+++..|. +..++...-.+
T Consensus 129 ~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~-l~~I~~~aF~~c~~L~~l~l~~n~-l~~I~~~aF~~ 202 (401)
T 4fdw_A 129 KDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-T-LEQLKEDIFYYCYNLKKADLSKTK-ITKLPASTFVY 202 (401)
T ss_dssp TTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-T-CCEECSSTTTTCTTCCEEECTTSC-CSEECTTTTTT
T ss_pred HhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-C-ccEehHHHhhCcccCCeeecCCCc-ceEechhhEee
Confidence 4567676 6999999876 666654 4555 4799999985 3 3444 4678899999999998754 44455433336
Q ss_pred ccCceeEecccccccccccCCCCCCCcEEeccccCCchhhh-hhccCCCCcCeeecccCcCCCcC-ccccccCcccceee
Q 036466 501 VSLRMFVVTTKQKSLLESGIGCLSSLRFLMISNCGNLEYLF-EDIDQLSVLRSLVVNACPRLNLL-PPAMKYLSSLERLI 578 (727)
Q Consensus 501 ~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~-~~l~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~ 578 (727)
.+|+.+.+..+-.......+..+++|+.+.+..+ +..+. .++.. .+|+.+.+..+ . ..+ ..++.+|++|+.+.
T Consensus 203 ~~L~~l~lp~~l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~~-i-~~I~~~aF~~c~~L~~l~ 277 (401)
T 4fdw_A 203 AGIEEVLLPVTLKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLPNG-V-TNIASRAFYYCPELAEVT 277 (401)
T ss_dssp CCCSEEECCTTCCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEETT-C-CEECTTTTTTCTTCCEEE
T ss_pred cccCEEEeCCchheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeCCC-c-cEEChhHhhCCCCCCEEE
Confidence 8999999986633344456889999999999863 44443 34555 78999999542 2 333 45788899999999
Q ss_pred ccccccccccccccccccCCCCCCCCCCceeeEEEecCCCCCCCcchhhhcCCCCcccEEEecCCCCccccCccCccccc
Q 036466 579 FDECESLSLSLNMEMKEEGSHHDRKNVGSHLRTLYVARLTPLLELPQWLLQGSSKTLQTLAIGDCPNFMALPGSLKDLEA 658 (727)
Q Consensus 579 l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~ 658 (727)
+.++...... ...--...+.+|++|+.+.|.. .+..++...+ ..|++|+.+.|..+ ....-...|.++ +
T Consensus 278 l~~~~~~~~~------~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF-~~c~~L~~l~lp~~-l~~I~~~aF~~~-~ 346 (401)
T 4fdw_A 278 TYGSTFNDDP------EAMIHPYCLEGCPKLARFEIPE--SIRILGQGLL-GGNRKVTQLTIPAN-VTQINFSAFNNT-G 346 (401)
T ss_dssp EESSCCCCCT------TCEECTTTTTTCTTCCEECCCT--TCCEECTTTT-TTCCSCCEEEECTT-CCEECTTSSSSS-C
T ss_pred eCCccccCCc------ccEECHHHhhCCccCCeEEeCC--ceEEEhhhhh-cCCCCccEEEECcc-ccEEcHHhCCCC-C
Confidence 8775321000 0001145677899999999984 3555544332 56899999999654 333335568888 9
Q ss_pred cccccccccccccccCccCCCCC-ccCeeeccCC
Q 036466 659 LENLVIGICPKLSSLPEGMHHLT-TLKTLAIEEC 691 (727)
Q Consensus 659 L~~L~l~~~~~~~~l~~~l~~l~-~L~~L~l~~c 691 (727)
|+.|.+.+|....-....+.+++ +++.|.+-.+
T Consensus 347 L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 347 IKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp CCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred CCEEEEcCCCCcccccccccCCCCCccEEEeCHH
Confidence 99999999865443334556664 7888888764
No 158
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.89 E-value=5.9e-09 Score=95.39 Aligned_cols=103 Identities=17% Similarity=0.138 Sum_probs=74.0
Q ss_pred cceEEEecCCCccccccccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcccccCceeEecc
Q 036466 431 SLRVLVLTNSAIEVLPRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTT 510 (727)
Q Consensus 431 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 510 (727)
..+.++++++.+..+|..+. .+|++|++++|.+.+..|..+..+++|++|++++|.+....+..+..+++|++|++++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 45778888888888877653 7788888888875555566677888888888887765544445567777888888888
Q ss_pred cccccccc-cCCCCCCCcEEeccccC
Q 036466 511 KQKSLLES-GIGCLSSLRFLMISNCG 535 (727)
Q Consensus 511 ~~~~~~~~-~~~~l~~L~~L~l~~~~ 535 (727)
|.+..++. .+..+++|++|++++|.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 77775554 36667777777777653
No 159
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.87 E-value=1.2e-08 Score=104.81 Aligned_cols=220 Identities=11% Similarity=-0.013 Sum_probs=126.2
Q ss_pred CCcceEEEecCCCcccccc-ccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCC---Cc-ccChhhcccccC
Q 036466 429 SKSLRVLVLTNSAIEVLPR-KMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLE---LE-ELPKDIRYLVSL 503 (727)
Q Consensus 429 ~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~---~~-~~~~~l~~l~~L 503 (727)
|++|+.|++.+ .+..+++ .|..|.+|+.+++..|......+.+|..+.++..+.+..... .. .-...+.++.+|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 77777777777 6665544 466777777777776664433344555555555555543110 00 011223344444
Q ss_pred c-eeEecccccc--cccccCCCCCCCcEEeccccCCchhhhhhccCCCCcCeeecccCcCCCcCccccccCcccceeecc
Q 036466 504 R-MFVVTTKQKS--LLESGIGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNACPRLNLLPPAMKYLSSLERLIFD 580 (727)
Q Consensus 504 ~-~L~l~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 580 (727)
+ .+.+.....- ..........++..+.+.++-...........+++|+.|++++|.....-+..+.++++|+++.+.
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~ 258 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP 258 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence 4 3322221110 001111233455566665532222222222247899999999876543334567888999999988
Q ss_pred ccccccccccccccccCCCCCCCCCCceee-EEEecCCCCCCCcchhhhcCCCCcccEEEecCCCCccccCccCcccccc
Q 036466 581 ECESLSLSLNMEMKEEGSHHDRKNVGSHLR-TLYVARLTPLLELPQWLLQGSSKTLQTLAIGDCPNFMALPGSLKDLEAL 659 (727)
Q Consensus 581 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~-~L~L~~~~~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L 659 (727)
.+ ++.. -...+.+|.+|+ .+++.. .+..++...+ ..|++|++|+++++.+...-+..|.++++|
T Consensus 259 ~n--i~~I----------~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF-~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L 323 (329)
T 3sb4_A 259 HN--LKTI----------GQRVFSNCGRLAGTLELPA--SVTAIEFGAF-MGCDNLRYVLATGDKITTLGDELFGNGVPS 323 (329)
T ss_dssp TT--CCEE----------CTTTTTTCTTCCEEEEECT--TCCEECTTTT-TTCTTEEEEEECSSCCCEECTTTTCTTCCC
T ss_pred cc--ccee----------hHHHhhCChhccEEEEEcc--cceEEchhhh-hCCccCCEEEeCCCccCccchhhhcCCcch
Confidence 75 2211 135577888998 999987 4445543322 678999999998876555555678899999
Q ss_pred ccccc
Q 036466 660 ENLVI 664 (727)
Q Consensus 660 ~~L~l 664 (727)
+.|..
T Consensus 324 ~~ly~ 328 (329)
T 3sb4_A 324 KLIYK 328 (329)
T ss_dssp CEEEC
T ss_pred hhhcc
Confidence 88763
No 160
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.86 E-value=1.1e-08 Score=99.79 Aligned_cols=178 Identities=15% Similarity=0.075 Sum_probs=106.1
Q ss_pred CCCceeec---chhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHH
Q 036466 47 RPSDIIGR---YEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQI 123 (727)
Q Consensus 47 ~~~~~vGr---~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 123 (727)
....|+|+ +..++.+..+... ...+.+.|+|++|+|||++|+.++.. .......+.|+++......
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~~~~~------~~~~~~ll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~~--- 94 (242)
T 3bos_A 26 TFTSYYPAAGNDELIGALKSAASG------DGVQAIYLWGPVKSGRTHLIHAACAR--ANELERRSFYIPLGIHASI--- 94 (242)
T ss_dssp STTTSCC--CCHHHHHHHHHHHHT------CSCSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEGGGGGGS---
T ss_pred ChhhccCCCCCHHHHHHHHHHHhC------CCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEHHHHHHH---
Confidence 34567764 3666667766654 23468999999999999999999884 3333344567766432110
Q ss_pred HHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCChhh--HHHHHHhhcCC-CCC-CEEEEecCch----
Q 036466 124 MTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDPRA--WGELKSLLLGG-AEG-SKILVTTRSN---- 195 (727)
Q Consensus 124 ~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~--~~~~~~~l~~~-~~~-~~iliTsr~~---- 195 (727)
+ .+ .+ +.+ .++.+|||||++...... ...+...+... ..+ .++|+|++..
T Consensus 95 ---~-~~----------------~~-~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~ 152 (242)
T 3bos_A 95 ---S-TA----------------LL-EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEA 152 (242)
T ss_dssp ---C-GG----------------GG-TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTT
T ss_pred ---H-HH----------------HH-Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHH
Confidence 0 00 00 001 346799999997654322 33333333221 112 2477777632
Q ss_pred -----HHHHHHhhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchHHHHHHHhh
Q 036466 196 -----KVALIMATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVRTVGSL 263 (727)
Q Consensus 196 -----~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~ 263 (727)
.+...+.. ...+.+.+++.++..+++...+...+.. ...+.+..+++.++|++..+..+...
T Consensus 153 ~~~~~~l~~r~~~---~~~i~l~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~l~~~~~g~~r~l~~~l~~ 219 (242)
T 3bos_A 153 GFVLPDLVSRMHW---GLTYQLQPMMDDEKLAALQRRAAMRGLQ---LPEDVGRFLLNRMARDLRTLFDVLDR 219 (242)
T ss_dssp TCCCHHHHHHHHH---SEEEECCCCCGGGHHHHHHHHHHHTTCC---CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHhhhhhhhHhhc---CceEEeCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHccCCHHHHHHHHHH
Confidence 11111111 2679999999999999999877433322 23466788999999998777655443
No 161
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.85 E-value=3.5e-08 Score=102.42 Aligned_cols=202 Identities=9% Similarity=0.040 Sum_probs=120.1
Q ss_pred CCCCCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCC-ceEEEEecCCCCHHH
Q 036466 44 SFVRPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFE-LKIWICVSEDSGKRQ 122 (727)
Q Consensus 44 ~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~-~~~~~~~~~~~~~~~ 122 (727)
.|.....++|+++.++.+..++... ....+.|+|++|+||||+|+.++........+. .++.++.........
T Consensus 32 ~p~~~~~i~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 105 (353)
T 1sxj_D 32 RPKNLDEVTAQDHAVTVLKKTLKSA------NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISI 105 (353)
T ss_dssp CCSSTTTCCSCCTTHHHHHHHTTCT------TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHH
T ss_pred CCCCHHHhhCCHHHHHHHHHHHhcC------CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHH
Confidence 3344567999999999999998652 222389999999999999999998532221121 233444333223322
Q ss_pred HHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEEecCchH-HHHHH
Q 036466 123 IMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNK-VALIM 201 (727)
Q Consensus 123 ~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~iliTsr~~~-~~~~~ 201 (727)
+.+.+..+.......... . .....-.+++-++++|+++.........+...+.......++|+++.... +....
T Consensus 106 -~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l 180 (353)
T 1sxj_D 106 -VREKVKNFARLTVSKPSK-H---DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPL 180 (353)
T ss_dssp -HTTHHHHHHHSCCCCCCT-T---HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHH
T ss_pred -HHHHHHHHhhhcccccch-h---hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchh
Confidence 222222221100000000 0 00111123567999999988776666667766655445667777665432 11111
Q ss_pred hhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchHHHHHHH
Q 036466 202 ATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVRTVG 261 (727)
Q Consensus 202 ~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a 261 (727)
.. ....+.+.+++.++..+++...+...+.. ...+.+..|++.++|.|..+..+.
T Consensus 181 ~s--R~~~i~~~~~~~~~~~~~l~~~~~~~~~~---i~~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 181 AS--QCSKFRFKALDASNAIDRLRFISEQENVK---CDDGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp HH--HSEEEECCCCCHHHHHHHHHHHHHTTTCC---CCHHHHHHHHHHTSSCHHHHHHHH
T ss_pred hc--cCceEEeCCCCHHHHHHHHHHHHHHhCCC---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 11 12578999999999999998876443322 234677899999999998655443
No 162
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.79 E-value=1.4e-08 Score=95.19 Aligned_cols=155 Identities=20% Similarity=0.197 Sum_probs=84.3
Q ss_pred CCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHh-----cCCceEEEEecCCCCHHH
Q 036466 48 PSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEE-----HFELKIWICVSEDSGKRQ 122 (727)
Q Consensus 48 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~-----~f~~~~~~~~~~~~~~~~ 122 (727)
...++||+++++++.+++.. ...+.+.|+|++|+|||++|+.++....... ....++++++..
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 88 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQR------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------ 88 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTS------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHH------
T ss_pred ccccccchHHHHHHHHHHhc------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHH------
Confidence 45699999999999999866 2345789999999999999999988421110 112234444321
Q ss_pred HHHHHHHHhcCCCCCCCChHH-HHHHHHHHh-CCceEEEEEcCCCCCC--------hhhHHHHHHhhcCCCCCCEEEEec
Q 036466 123 IMTKIINSVTGGNHGNLDPDR-LQKVLRDSL-NGKRYLLVMDDVWNED--------PRAWGELKSLLLGGAEGSKILVTT 192 (727)
Q Consensus 123 ~~~~ll~~l~~~~~~~~~~~~-~~~~l~~~l-~~~~~LlvlDd~~~~~--------~~~~~~~~~~l~~~~~~~~iliTs 192 (727)
.. .... ....... +...+.... .+++.+|+|||++... ......+...+.. .+..+|+||
T Consensus 89 ~~-------~~~~-~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~--~~~~~i~~~ 158 (195)
T 1jbk_A 89 LV-------AGAK-YRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCVGAT 158 (195)
T ss_dssp HH-------TTTC-SHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHT--TSCCEEEEE
T ss_pred Hh-------ccCC-ccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc--CCeEEEEeC
Confidence 00 0000 0000011 111111111 3467899999997652 1112233333322 345577776
Q ss_pred CchHHHHHH----hhcCCCCceecCCCChhhHHHHH
Q 036466 193 RSNKVALIM----ATMRGTTGYNLQELPYKDCLSLF 224 (727)
Q Consensus 193 r~~~~~~~~----~~~~~~~~~~l~~l~~~~~~~l~ 224 (727)
......... ........+.+.+++.++..+++
T Consensus 159 ~~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 159 TLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp CHHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred CHHHHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 655432111 11112346888888888876554
No 163
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.78 E-value=5.1e-08 Score=100.40 Aligned_cols=184 Identities=15% Similarity=0.155 Sum_probs=113.8
Q ss_pred CCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHH
Q 036466 47 RPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTK 126 (727)
Q Consensus 47 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 126 (727)
....|+|++..++.+..++..... .+...+.+.|+|++|+|||++|+.++.. .... .+.+++......
T Consensus 27 ~~~~iiG~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~ia~~--~~~~---~~~~~~~~~~~~------ 94 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVFIAAAKK-RNECLDHILFSGPAGLGKTTLANIISYE--MSAN---IKTTAAPMIEKS------ 94 (338)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHH-TTSCCCCEEEECSTTSSHHHHHHHHHHH--TTCC---EEEEEGGGCCSH------
T ss_pred CHHHhCChHHHHHHHHHHHHHHHh-cCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCC---eEEecchhccch------
Confidence 446799999999999998865310 0133456899999999999999999763 2222 223333222111
Q ss_pred HHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCChhhHHHHHHhhcCCC------------------CCCEE
Q 036466 127 IINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLGGA------------------EGSKI 188 (727)
Q Consensus 127 ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~------------------~~~~i 188 (727)
......+.. ..++.+|+||+++.........+...+.... ++..+
T Consensus 95 ---------------~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (338)
T 3pfi_A 95 ---------------GDLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTL 157 (338)
T ss_dssp ---------------HHHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEE
T ss_pred ---------------hHHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEE
Confidence 111111111 1356799999998887666666666654321 12456
Q ss_pred EEecCchH-HHHHHhhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchHHHHHHHhh
Q 036466 189 LVTTRSNK-VALIMATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVRTVGSL 263 (727)
Q Consensus 189 liTsr~~~-~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~ 263 (727)
|.+|.... +...+.. .....+.+.+++.++..+++.+.+...+. ....+.+..+++.+.|+|..+..+...
T Consensus 158 i~atn~~~~l~~~L~~-R~~~~i~l~~~~~~e~~~il~~~~~~~~~---~~~~~~~~~l~~~~~G~~r~l~~~l~~ 229 (338)
T 3pfi_A 158 IGATTRAGMLSNPLRD-RFGMQFRLEFYKDSELALILQKAALKLNK---TCEEKAALEIAKRSRSTPRIALRLLKR 229 (338)
T ss_dssp EEEESCGGGSCHHHHT-TCSEEEECCCCCHHHHHHHHHHHHHHTTC---EECHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred EEeCCCccccCHHHHh-hcCEEeeCCCcCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 66555432 1111111 22367999999999999999887644332 233466788899999999666654433
No 164
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.73 E-value=5.9e-08 Score=105.53 Aligned_cols=203 Identities=14% Similarity=0.149 Sum_probs=112.0
Q ss_pred CCCCCceeecchhHHHHHHHHhcCC-----------CCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEE
Q 036466 45 FVRPSDIIGRYEDGEKIIELLTQTS-----------DGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWIC 113 (727)
Q Consensus 45 ~~~~~~~vGr~~~~~~l~~~l~~~~-----------~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~ 113 (727)
|....+++|+++.++.|.+++.... .......+.+.|+|++|+|||++|+.++... . + .++.++
T Consensus 35 P~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l--~--~-~~i~in 109 (516)
T 1sxj_A 35 PTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL--G--Y-DILEQN 109 (516)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT--T--C-EEEEEC
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc--C--C-CEEEEe
Confidence 3344679999999999999986521 0001235789999999999999999998732 1 1 233444
Q ss_pred ecCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCCh---hhHHHHHHhhcCCCCCCEEEE
Q 036466 114 VSEDSGKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDP---RAWGELKSLLLGGAEGSKILV 190 (727)
Q Consensus 114 ~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~---~~~~~~~~~l~~~~~~~~ili 190 (727)
++..... .+....+...........-...... .....+++.+||||+++.... ..+..+...+.. .+..||+
T Consensus 110 ~s~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIl 184 (516)
T 1sxj_A 110 ASDVRSK-TLLNAGVKNALDNMSVVGYFKHNEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLIL 184 (516)
T ss_dssp TTSCCCH-HHHHHTGGGGTTBCCSTTTTTC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEE
T ss_pred CCCcchH-HHHHHHHHHHhccccHHHHHhhhhh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEE
Confidence 4443332 2333333322111000000000000 001124678999999976532 223444444433 2334555
Q ss_pred ecCchHHHHHHhhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchH-HHHHH
Q 036466 191 TTRSNKVALIMATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPL-AVRTV 260 (727)
Q Consensus 191 Tsr~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~ 260 (727)
++.................+.+++++.++..+++.+.+...+.... .+++..|++.++|.+. ++..+
T Consensus 185 i~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~---~~~l~~la~~s~GdiR~~i~~L 252 (516)
T 1sxj_A 185 ICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLD---PNVIDRLIQTTRGDIRQVINLL 252 (516)
T ss_dssp EESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCC---TTHHHHHHHHTTTCHHHHHHHH
T ss_pred EEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHHH
Confidence 5443221110111223357899999999999999876654333222 2456789999999554 44443
No 165
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.72 E-value=3.6e-08 Score=90.09 Aligned_cols=105 Identities=21% Similarity=0.190 Sum_probs=81.4
Q ss_pred cCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcccccCceeEeccccccccccc-CCCCCCCcEEecc
Q 036466 454 QLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTKQKSLLESG-IGCLSSLRFLMIS 532 (727)
Q Consensus 454 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~ 532 (727)
..+.++++++. +..+|..+ .++|++|++++|.+.+..|..+..+++|+.|++++|.++.++.. +..+++|++|+++
T Consensus 10 ~~~~l~~s~n~-l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKS-LASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSC-CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCC-cCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 46788999887 55677655 37899999998877776678888999999999999999866654 5788889999998
Q ss_pred ccCCchhhhhhccCCCCcCeeecccCcCC
Q 036466 533 NCGNLEYLFEDIDQLSVLRSLVVNACPRL 561 (727)
Q Consensus 533 ~~~~~~~l~~~l~~l~~L~~L~l~~~~~~ 561 (727)
+|......+..+..+++|+.|++++|.+.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 87543333345788888888888888653
No 166
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.72 E-value=1.2e-07 Score=100.23 Aligned_cols=186 Identities=15% Similarity=0.104 Sum_probs=109.2
Q ss_pred CCCCCceeecchhH---HHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHH
Q 036466 45 FVRPSDIIGRYEDG---EKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKR 121 (727)
Q Consensus 45 ~~~~~~~vGr~~~~---~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 121 (727)
|..-..++|.+..+ ..|...+.. ...+.+.|+|++|+||||+|+.++.. .... |+.++......
T Consensus 22 P~~l~~ivGq~~~~~~~~~L~~~i~~------~~~~~vLL~GppGtGKTtlAr~ia~~--~~~~-----f~~l~a~~~~~ 88 (447)
T 3pvs_A 22 PENLAQYIGQQHLLAAGKPLPRAIEA------GHLHSMILWGPPGTGKTTLAEVIARY--ANAD-----VERISAVTSGV 88 (447)
T ss_dssp CCSTTTCCSCHHHHSTTSHHHHHHHH------TCCCEEEEECSTTSSHHHHHHHHHHH--TTCE-----EEEEETTTCCH
T ss_pred CCCHHHhCCcHHHHhchHHHHHHHHc------CCCcEEEEECCCCCcHHHHHHHHHHH--hCCC-----eEEEEeccCCH
Confidence 34456799999988 788888876 33468999999999999999999873 2222 23332221112
Q ss_pred HHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEE-ecCchHHHHH
Q 036466 122 QIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILV-TTRSNKVALI 200 (727)
Q Consensus 122 ~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~ili-Tsr~~~~~~~ 200 (727)
...++++... ......+++.+|+||+++.........+...+.. ....+|. ||.+....-.
T Consensus 89 ~~ir~~~~~a----------------~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~ 150 (447)
T 3pvs_A 89 KEIREAIERA----------------RQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELN 150 (447)
T ss_dssp HHHHHHHHHH----------------HHHHHTTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSC
T ss_pred HHHHHHHHHH----------------HHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccC
Confidence 2222222221 0011135678999999988765555556655554 2334444 4444321100
Q ss_pred HhhcCCCCceecCCCChhhHHHHHHHhhccCCC----CCChhHHHHHHHHHHHcCCchHHHHHHH
Q 036466 201 MATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQ----EKHPNLVKIGEKIVEKCRGIPLAVRTVG 261 (727)
Q Consensus 201 ~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~----~~~~~~~~~~~~i~~~~~g~Plal~~~a 261 (727)
-........+.+.+++.++..+++.+.+..... .......+..+.+++.++|.+..+.-+.
T Consensus 151 ~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~L 215 (447)
T 3pvs_A 151 SALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTL 215 (447)
T ss_dssp HHHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHH
T ss_pred HHHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 011122368899999999999999887643111 1122345677889999999887665443
No 167
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.72 E-value=3.9e-08 Score=90.24 Aligned_cols=103 Identities=17% Similarity=0.191 Sum_probs=81.4
Q ss_pred CcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcccccCceeEeccccccccccc-CCCCCCCcEEeccc
Q 036466 455 LRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTKQKSLLESG-IGCLSSLRFLMISN 533 (727)
Q Consensus 455 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~ 533 (727)
-+.++++++. ++.+|..+. ++|++|++++|.+.+..|..+..+++|+.|++++|.++.+|.. +..+++|++|++++
T Consensus 14 ~~~l~~~~n~-l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIR-LASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSC-CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCC-CCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 4788888887 567787553 7899999998877766678888999999999999999877765 57888999999988
Q ss_pred cCCchhhhh-hccCCCCcCeeecccCcCC
Q 036466 534 CGNLEYLFE-DIDQLSVLRSLVVNACPRL 561 (727)
Q Consensus 534 ~~~~~~l~~-~l~~l~~L~~L~l~~~~~~ 561 (727)
|.. ..++. .+..+++|+.|++++|.+.
T Consensus 91 N~l-~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 NHL-KSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SCC-CCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred Ccc-ceeCHHHhccccCCCEEEeCCCCcc
Confidence 654 44544 4788888889888887653
No 168
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.70 E-value=4.5e-08 Score=101.58 Aligned_cols=198 Identities=10% Similarity=0.060 Sum_probs=114.1
Q ss_pred CCceeecchhHHHHHHHH-hcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceE----------------
Q 036466 48 PSDIIGRYEDGEKIIELL-TQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKI---------------- 110 (727)
Q Consensus 48 ~~~~vGr~~~~~~l~~~l-~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~---------------- 110 (727)
-..++|++..++.+.+++ ... ..+. +.|+|++|+||||+++.++... .....+.+
T Consensus 13 ~~~~vg~~~~~~~l~~~~~~~~-----~~~~-~ll~Gp~G~GKTtl~~~la~~l--~~~~~g~i~~~~~~~~~~~~~~~~ 84 (354)
T 1sxj_E 13 LNALSHNEELTNFLKSLSDQPR-----DLPH-LLLYGPNGTGKKTRCMALLESI--FGPGVYRLKIDVRQFVTASNRKLE 84 (354)
T ss_dssp GGGCCSCHHHHHHHHTTTTCTT-----CCCC-EEEECSTTSSHHHHHHTHHHHH--SCTTCCC-----------------
T ss_pred HHHhcCCHHHHHHHHHHHhhCC-----CCCe-EEEECCCCCCHHHHHHHHHHHH--cCCCCCeEEecceeecccccccce
Confidence 356899999999888887 331 2234 8999999999999999887631 11000000
Q ss_pred --------EEEecCCC-C--HHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCChhhHHHHHHhh
Q 036466 111 --------WICVSEDS-G--KRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLL 179 (727)
Q Consensus 111 --------~~~~~~~~-~--~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~~~~~l 179 (727)
++...... . .....++++..+...... .... .+ ..+.+++-++|+|+++..+......+...+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~-~l-s~l~~~~~vlilDE~~~L~~~~~~~L~~~l 158 (354)
T 1sxj_E 85 LNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQV----DFQD-SK-DGLAHRYKCVIINEANSLTKDAQAALRRTM 158 (354)
T ss_dssp -CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHHHHH
T ss_pred eeeecccceEEecHhhcCCcchHHHHHHHHHHHHhccc----cccc-cc-cccCCCCeEEEEeCccccCHHHHHHHHHHH
Confidence 11111100 0 001223333332111000 0000 00 002336679999999988876777777777
Q ss_pred cCCCCCCEEEEecCchH-HHHHHhhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhH-HHHHHHHHHHcCCchHHH
Q 036466 180 LGGAEGSKILVTTRSNK-VALIMATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNL-VKIGEKIVEKCRGIPLAV 257 (727)
Q Consensus 180 ~~~~~~~~iliTsr~~~-~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~i~~~~~g~Plal 257 (727)
....++..+|++|.... +..... .....+.+.+++.++..+++...+...+.. .. .+.+..|++.++|.+..+
T Consensus 159 e~~~~~~~~Il~t~~~~~l~~~l~--sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~l~~i~~~~~G~~r~a 233 (354)
T 1sxj_E 159 EKYSKNIRLIMVCDSMSPIIAPIK--SQCLLIRCPAPSDSEISTILSDVVTNERIQ---LETKDILKRIAQASNGNLRVS 233 (354)
T ss_dssp HHSTTTEEEEEEESCSCSSCHHHH--TTSEEEECCCCCHHHHHHHHHHHHHHHTCE---ECCSHHHHHHHHHHTTCHHHH
T ss_pred HhhcCCCEEEEEeCCHHHHHHHHH--hhceEEecCCcCHHHHHHHHHHHHHHcCCC---CCcHHHHHHHHHHcCCCHHHH
Confidence 65445677777776532 211111 223789999999999999998876443322 12 356788999999998766
Q ss_pred HHHHhhh
Q 036466 258 RTVGSLL 264 (727)
Q Consensus 258 ~~~a~~l 264 (727)
..+...+
T Consensus 234 ~~~l~~~ 240 (354)
T 1sxj_E 234 LLMLESM 240 (354)
T ss_dssp HHHHTHH
T ss_pred HHHHHHH
Confidence 6554433
No 169
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.66 E-value=3.8e-07 Score=90.08 Aligned_cols=194 Identities=13% Similarity=0.132 Sum_probs=104.2
Q ss_pred CCCceeecchhHHHHHHHHhc---CCC---CCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCH
Q 036466 47 RPSDIIGRYEDGEKIIELLTQ---TSD---GESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGK 120 (727)
Q Consensus 47 ~~~~~vGr~~~~~~l~~~l~~---~~~---~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~ 120 (727)
.-.+++|.++..+.+.+++.. +.. ......+.+.|+|++|+|||++|+.++.. .... .+++++....+
T Consensus 4 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~--~~~~---~~~~~~~~~~~- 77 (262)
T 2qz4_A 4 SFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE--AQVP---FLAMAGAEFVE- 77 (262)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHH--HTCC---EEEEETTTTSS-
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHH--hCCC---EEEechHHHHh-
Confidence 345689999888888766532 110 00123467899999999999999999873 2222 23444432111
Q ss_pred HHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCC---------------hhhHHHHHHhhcC--CC
Q 036466 121 RQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNED---------------PRAWGELKSLLLG--GA 183 (727)
Q Consensus 121 ~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~---------------~~~~~~~~~~l~~--~~ 183 (727)
.........+...+.......+.+|+||+++... ......+...+.. ..
T Consensus 78 --------------~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 143 (262)
T 2qz4_A 78 --------------VIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTT 143 (262)
T ss_dssp --------------SSTTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTT
T ss_pred --------------hccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCC
Confidence 0011111122233333334567999999997641 1122233333332 22
Q ss_pred CCCEEEEecCchHHH-HHHhh-cCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchH-HHHHH
Q 036466 184 EGSKILVTTRSNKVA-LIMAT-MRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPL-AVRTV 260 (727)
Q Consensus 184 ~~~~iliTsr~~~~~-~~~~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~ 260 (727)
.+..+|.||...... ..... ......+.++..+.++..+++...+...+.. .........+++.+.|.+- .+..+
T Consensus 144 ~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~--~~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 144 DHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLT--QSSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp CCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCC--BTHHHHHHHHHHTCTTCCHHHHHHH
T ss_pred CCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCC--cchhhHHHHHHHHCCCCCHHHHHHH
Confidence 355666666554321 11111 1223568899999999999998876443322 1222234778888887654 55444
Q ss_pred Hh
Q 036466 261 GS 262 (727)
Q Consensus 261 a~ 262 (727)
..
T Consensus 222 ~~ 223 (262)
T 2qz4_A 222 CN 223 (262)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 170
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.66 E-value=1.3e-07 Score=94.82 Aligned_cols=191 Identities=17% Similarity=0.121 Sum_probs=105.0
Q ss_pred CCCceeecchhHHHHHHHHhcCCCC-------CCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCC
Q 036466 47 RPSDIIGRYEDGEKIIELLTQTSDG-------ESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSG 119 (727)
Q Consensus 47 ~~~~~vGr~~~~~~l~~~l~~~~~~-------~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~ 119 (727)
...+++|.++.+++|.+++..+... .-...+.+.|+|++|+|||++|+.++.. .... .+.+.+....
T Consensus 15 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~--~~~~---~~~v~~~~~~- 88 (285)
T 3h4m_A 15 RYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE--TNAT---FIRVVGSELV- 88 (285)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH--TTCE---EEEEEGGGGC-
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCC---EEEEehHHHH-
Confidence 3456899999999999887442000 0023457999999999999999999873 2222 2233322110
Q ss_pred HHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCC-----------Ch---hhHHHHHHhhc--CCC
Q 036466 120 KRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNE-----------DP---RAWGELKSLLL--GGA 183 (727)
Q Consensus 120 ~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~-----------~~---~~~~~~~~~l~--~~~ 183 (727)
..............+.......+.+|+||+++.. +. ..+..+...+. ...
T Consensus 89 --------------~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 154 (285)
T 3h4m_A 89 --------------KKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDAR 154 (285)
T ss_dssp --------------CCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSS
T ss_pred --------------HhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCC
Confidence 0001111112222333333456789999999542 11 11222222222 223
Q ss_pred CCCEEEEecCchHHHH-HHh-hcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCC-chHHHHHH
Q 036466 184 EGSKILVTTRSNKVAL-IMA-TMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRG-IPLAVRTV 260 (727)
Q Consensus 184 ~~~~iliTsr~~~~~~-~~~-~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal~~~ 260 (727)
.+..||.||....... ... .......+.++..+.++..+++............ .....++..+.| .|-.+..+
T Consensus 155 ~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~----~~~~~l~~~~~g~~~~~i~~l 230 (285)
T 3h4m_A 155 GDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAED----VNLEEIAKMTEGCVGAELKAI 230 (285)
T ss_dssp SSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTT----CCHHHHHHHCTTCCHHHHHHH
T ss_pred CCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCc----CCHHHHHHHcCCCCHHHHHHH
Confidence 4567777876542211 111 1122257899999999999999887643322211 124667777776 45455544
Q ss_pred H
Q 036466 261 G 261 (727)
Q Consensus 261 a 261 (727)
+
T Consensus 231 ~ 231 (285)
T 3h4m_A 231 C 231 (285)
T ss_dssp H
T ss_pred H
Confidence 3
No 171
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.66 E-value=4.5e-07 Score=94.56 Aligned_cols=202 Identities=13% Similarity=0.087 Sum_probs=113.4
Q ss_pred CCceeecchhHHHHH---HHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEe----cCCCCH
Q 036466 48 PSDIIGRYEDGEKII---ELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICV----SEDSGK 120 (727)
Q Consensus 48 ~~~~vGr~~~~~~l~---~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~----~~~~~~ 120 (727)
...|+|++...+.+. +.+.... ...+.+.|+|++|+|||++|+.++.. ...... .+.+.+ ......
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~----~~~~~vLl~GppGtGKT~la~~la~~--l~~~~~-~~~~~~~~~~~~~~~~ 115 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGK----IAGRAVLIAGQPGTGKTAIAMGMAQA--LGPDTP-FTAIAGSEIFSLEMSK 115 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTC----CTTCEEEEEESTTSSHHHHHHHHHHH--HCSSCC-EEEEEGGGGSCSSSCH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCC----CCCCEEEEECCCCCCHHHHHHHHHHH--hcccCC-cccccchhhhhcccch
Confidence 457999999977754 4444321 22468999999999999999999984 222111 122222 122234
Q ss_pred HHHHHHHHHHhcCC------------------------------CCCCCChHHHHHHHHHHhC-----Cc----eEEEEE
Q 036466 121 RQIMTKIINSVTGG------------------------------NHGNLDPDRLQKVLRDSLN-----GK----RYLLVM 161 (727)
Q Consensus 121 ~~~~~~ll~~l~~~------------------------------~~~~~~~~~~~~~l~~~l~-----~~----~~Llvl 161 (727)
.+...+.++..... .....-...+...+.+... ++ +.+|+|
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~I 195 (368)
T 3uk6_A 116 TEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFI 195 (368)
T ss_dssp HHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEE
T ss_pred hHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEE
Confidence 44444444432110 0000012222233322211 22 469999
Q ss_pred cCCCCCChhhHHHHHHhhcCCCCCCEEEEecC-------------chHHHHHHhhcCCCCceecCCCChhhHHHHHHHhh
Q 036466 162 DDVWNEDPRAWGELKSLLLGGAEGSKILVTTR-------------SNKVALIMATMRGTTGYNLQELPYKDCLSLFMKCA 228 (727)
Q Consensus 162 Dd~~~~~~~~~~~~~~~l~~~~~~~~iliTsr-------------~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~ 228 (727)
|+++.........+...+....... +++++. ...+...+ ......+.+.+++.++..+++...+
T Consensus 196 DEi~~l~~~~~~~L~~~le~~~~~~-~ii~t~~~~~~i~~t~~~~~~~l~~~l--~sR~~~i~~~~~~~~e~~~il~~~~ 272 (368)
T 3uk6_A 196 DEVHMLDIESFSFLNRALESDMAPV-LIMATNRGITRIRGTSYQSPHGIPIDL--LDRLLIVSTTPYSEKDTKQILRIRC 272 (368)
T ss_dssp ESGGGSBHHHHHHHHHHTTCTTCCE-EEEEESCSEEECBTSSCEEETTCCHHH--HTTEEEEEECCCCHHHHHHHHHHHH
T ss_pred hhccccChHHHHHHHHHhhCcCCCe-eeeecccceeeeeccCCCCcccCCHHH--HhhccEEEecCCCHHHHHHHHHHHH
Confidence 9999887766666776665433333 443332 11111111 1123568999999999999999876
Q ss_pred ccCCCCCChhHHHHHHHHHHHcC-CchHHHHHHHh
Q 036466 229 FKVGQEKHPNLVKIGEKIVEKCR-GIPLAVRTVGS 262 (727)
Q Consensus 229 ~~~~~~~~~~~~~~~~~i~~~~~-g~Plal~~~a~ 262 (727)
...+.. ...+.+..+++.+. |.|..+..+..
T Consensus 273 ~~~~~~---~~~~~l~~l~~~~~~G~~r~~~~ll~ 304 (368)
T 3uk6_A 273 EEEDVE---MSEDAYTVLTRIGLETSLRYAIQLIT 304 (368)
T ss_dssp HHTTCC---BCHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHcCCC---CCHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 543322 33466788889887 88876655443
No 172
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.62 E-value=7.4e-09 Score=107.58 Aligned_cols=130 Identities=15% Similarity=0.070 Sum_probs=56.4
Q ss_pred CcceEEEecCCCccc--cccccCCCCcCcEEeccCCccccccCccc-----cCCCCCCEeecCCCCCCc----ccChhhc
Q 036466 430 KSLRVLVLTNSAIEV--LPRKMGNLKQLRHLDLSGNRKIKKLPNSI-----CELQSLQTLNLGDCLELE----ELPKDIR 498 (727)
Q Consensus 430 ~~L~~L~l~~~~~~~--l~~~~~~l~~L~~L~l~~~~~~~~~~~~~-----~~l~~L~~L~l~~~~~~~----~~~~~l~ 498 (727)
++|+.|++++|.+.. .......+++|+.|++++|.+.......+ ...++|++|++++|.+.. .++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 466666666665542 11111223455566666555332211111 123455556665554322 1233334
Q ss_pred ccccCceeEeccccccc-----ccccCCCCCCCcEEeccccCCch----hhhhhccCCCCcCeeecccCc
Q 036466 499 YLVSLRMFVVTTKQKSL-----LESGIGCLSSLRFLMISNCGNLE----YLFEDIDQLSVLRSLVVNACP 559 (727)
Q Consensus 499 ~l~~L~~L~l~~~~~~~-----~~~~~~~l~~L~~L~l~~~~~~~----~l~~~l~~l~~L~~L~l~~~~ 559 (727)
.+++|++|++++|.++. ++..+..+++|++|++++|.... .+...+..+++|+.|++++|.
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 45555555555555441 12233334445555555443221 122333334444445444443
No 173
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.62 E-value=3.1e-09 Score=110.48 Aligned_cols=154 Identities=19% Similarity=0.124 Sum_probs=88.4
Q ss_pred CCcceEEEecCCCcccc-----ccccC-CCCcCcEEeccCCccccccCccc-cCCCCCCEeecCCCCCCcccChhh----
Q 036466 429 SKSLRVLVLTNSAIEVL-----PRKMG-NLKQLRHLDLSGNRKIKKLPNSI-CELQSLQTLNLGDCLELEELPKDI---- 497 (727)
Q Consensus 429 ~~~L~~L~l~~~~~~~l-----~~~~~-~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~l---- 497 (727)
+++|+.|++++|.+... ...+. ...+|+.|++++|.+.......+ ..+++|++|++++|.+.......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 46788889998887632 22222 23678888888887543222222 235677888888776544322222
Q ss_pred -cccccCceeEeccccccc-----ccccCCCCCCCcEEeccccCCch----hhhhhccCCCCcCeeecccCcCCC----c
Q 036466 498 -RYLVSLRMFVVTTKQKSL-----LESGIGCLSSLRFLMISNCGNLE----YLFEDIDQLSVLRSLVVNACPRLN----L 563 (727)
Q Consensus 498 -~~l~~L~~L~l~~~~~~~-----~~~~~~~l~~L~~L~l~~~~~~~----~l~~~l~~l~~L~~L~l~~~~~~~----~ 563 (727)
...++|+.|++++|.++. ++..+..+++|++|++++|.... .+...+..+++|+.|++++|.... .
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 234667777777777652 33334556667777777765332 234555666677777777665432 1
Q ss_pred CccccccCcccceeecccc
Q 036466 564 LPPAMKYLSSLERLIFDEC 582 (727)
Q Consensus 564 ~~~~l~~l~~L~~L~l~~~ 582 (727)
++..+...++|++|++++|
T Consensus 231 l~~~L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFN 249 (372)
T ss_dssp HHHHHHHCSSCCEEECTTS
T ss_pred HHHHHHhCCCCCEEeccCC
Confidence 2233334455555555554
No 174
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.60 E-value=1.2e-06 Score=88.78 Aligned_cols=194 Identities=14% Similarity=0.058 Sum_probs=109.0
Q ss_pred CCceeecchhHHHHHHHHhcC------CCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHH
Q 036466 48 PSDIIGRYEDGEKIIELLTQT------SDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKR 121 (727)
Q Consensus 48 ~~~~vGr~~~~~~l~~~l~~~------~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 121 (727)
-.+++|.++..+.|.+.+..+ -.+.....+.+.|+|++|+|||++|+.++.. ... ...+.++.....
T Consensus 11 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~--~~~--~~~~~i~~~~l~--- 83 (322)
T 1xwi_A 11 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE--ANN--STFFSISSSDLV--- 83 (322)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHH--TTS--CEEEEEECCSSC---
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHH--cCC--CcEEEEEhHHHH---
Confidence 356899999999988876321 0111234578999999999999999999973 211 112233332211
Q ss_pred HHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCC-------hh----hHHHHHHhhcC---CCCCCE
Q 036466 122 QIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNED-------PR----AWGELKSLLLG---GAEGSK 187 (727)
Q Consensus 122 ~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~-------~~----~~~~~~~~l~~---~~~~~~ 187 (727)
..........+...+......++.+|+||+++... .. ....+...+.. ...+..
T Consensus 84 ------------~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~ 151 (322)
T 1xwi_A 84 ------------SKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGIL 151 (322)
T ss_dssp ------------CSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEE
T ss_pred ------------hhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEE
Confidence 11112222223333333334578999999997541 01 11223333322 233455
Q ss_pred EEEecCch-HHHHHHhhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCc-hHHHHHHHhhh
Q 036466 188 ILVTTRSN-KVALIMATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGI-PLAVRTVGSLL 264 (727)
Q Consensus 188 iliTsr~~-~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~a~~l 264 (727)
||.||... .+...... +....+.++..+.++..+++.......... ........|++.+.|. +-.+..++...
T Consensus 152 vI~atn~~~~ld~al~r-Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~---l~~~~l~~la~~t~G~sgadl~~l~~~A 226 (322)
T 1xwi_A 152 VLGATNIPWVLDSAIRR-RFEKRIYIPLPEPHARAAMFKLHLGTTQNS---LTEADFRELGRKTDGYSGADISIIVRDA 226 (322)
T ss_dssp EEEEESCTTTSCHHHHH-TCCEEEECCCCCHHHHHHHHHHHHTTCCBC---CCHHHHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred EEEecCCcccCCHHHHh-hcCeEEEeCCcCHHHHHHHHHHHHhcCCCC---CCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 55556443 12122211 233678899999999999998876332211 1234568899999886 55566665443
No 175
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.58 E-value=1.7e-07 Score=83.01 Aligned_cols=115 Identities=17% Similarity=0.093 Sum_probs=73.0
Q ss_pred ceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHH
Q 036466 50 DIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIIN 129 (727)
Q Consensus 50 ~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~ 129 (727)
.++|+...+.++.+.+..... ....|.|+|++|+|||++|+.++..... ..... + +++......
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~----~~~~vll~G~~GtGKt~lA~~i~~~~~~-~~~~~-v-~~~~~~~~~--------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE----TDIAVWLYGAPGTGRMTGARYLHQFGRN-AQGEF-V-YRELTPDNA--------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT----CCSCEEEESSTTSSHHHHHHHHHHSSTT-TTSCC-E-EEECCTTTS---------
T ss_pred CceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCCHHHHHHHHHHhCCc-cCCCE-E-EECCCCCcc---------
Confidence 589999999999998865431 2335899999999999999999873211 11122 2 666543222
Q ss_pred HhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEEecCch
Q 036466 130 SVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSN 195 (727)
Q Consensus 130 ~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~iliTsr~~ 195 (727)
.. ....+... +.-+|+||+++.........+...+.......++|.||...
T Consensus 66 ---------~~---~~~~~~~a---~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 66 ---------PQ---LNDFIALA---QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTS 116 (145)
T ss_dssp ---------SC---HHHHHHHH---TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESSC
T ss_pred ---------hh---hhcHHHHc---CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCcC
Confidence 01 11112221 23578999999888766677777775555567788777653
No 176
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.57 E-value=1.3e-06 Score=89.25 Aligned_cols=174 Identities=14% Similarity=0.054 Sum_probs=107.5
Q ss_pred cchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhc-------------------CCceEEEEe
Q 036466 54 RYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEH-------------------FELKIWICV 114 (727)
Q Consensus 54 r~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~-------------------f~~~~~~~~ 114 (727)
.++..+.+...+... .-++.+.++|++|+|||++|+.++....-... .....++..
T Consensus 7 ~~~~~~~l~~~i~~~-----~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~ 81 (334)
T 1a5t_A 7 LRPDFEKLVASYQAG-----RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAP 81 (334)
T ss_dssp GHHHHHHHHHHHHTT-----CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECC
T ss_pred hHHHHHHHHHHHHcC-----CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEec
Confidence 355667777777652 34568999999999999999999874211110 011122221
Q ss_pred cCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHh----CCceEEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEE
Q 036466 115 SEDSGKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSL----NGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILV 190 (727)
Q Consensus 115 ~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l----~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~ili 190 (727)
.. .......+++.+.+.... .+++-++|+|+++.......+.+...+-...+++.+|+
T Consensus 82 ~~------------------~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il 143 (334)
T 1a5t_A 82 EK------------------GKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFL 143 (334)
T ss_dssp CT------------------TCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEE
T ss_pred cc------------------cCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEE
Confidence 10 001122222222222111 24567899999998887777778888766556677777
Q ss_pred ecCchH-HHHHHhhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchHHHHHH
Q 036466 191 TTRSNK-VALIMATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVRTV 260 (727)
Q Consensus 191 Tsr~~~-~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 260 (727)
+|.... +..... .....+.+.+++.++..+++.... ....+.+..+++.++|.|..+..+
T Consensus 144 ~t~~~~~l~~ti~--SRc~~~~~~~~~~~~~~~~L~~~~--------~~~~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 144 ATREPERLLATLR--SRCRLHYLAPPPEQYAVTWLSREV--------TMSQDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp EESCGGGSCHHHH--TTSEEEECCCCCHHHHHHHHHHHC--------CCCHHHHHHHHHHTTTCHHHHHHT
T ss_pred EeCChHhCcHHHh--hcceeeeCCCCCHHHHHHHHHHhc--------CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 666542 222221 233689999999999999998864 112355688999999999766544
No 177
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.57 E-value=1.2e-06 Score=92.86 Aligned_cols=166 Identities=17% Similarity=0.112 Sum_probs=98.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcchhhHhcC--CceEEEEecCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhC
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYNDQRVEEHF--ELKIWICVSEDSGKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLN 153 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~ 153 (727)
...+.|+|++|+||||||+.+++ .....+ ..++|+++. .+..++...+... .. ..+...++
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~--~l~~~~~~~~v~~v~~~------~~~~~~~~~~~~~-----~~----~~~~~~~~ 192 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITSE------KFLNDLVDSMKEG-----KL----NEFREKYR 192 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHH--HHHHHCCSSCEEEEEHH------HHHHHHHHHHHTT-----CH----HHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEeeHH------HHHHHHHHHHHcc-----cH----HHHHHHhc
Confidence 56799999999999999999998 343333 234565543 3344444444221 11 22333444
Q ss_pred CceEEEEEcCCCCCCh--hhHHHHHHhhcC-CCCCCEEEEecCchHH-----HH-HHhhcCCCCceecCCCChhhHHHHH
Q 036466 154 GKRYLLVMDDVWNEDP--RAWGELKSLLLG-GAEGSKILVTTRSNKV-----AL-IMATMRGTTGYNLQELPYKDCLSLF 224 (727)
Q Consensus 154 ~~~~LlvlDd~~~~~~--~~~~~~~~~l~~-~~~~~~iliTsr~~~~-----~~-~~~~~~~~~~~~l~~l~~~~~~~l~ 224 (727)
.++-+|+|||++.... .....+...+.. ...+..||+||..... .. ..........+.+.+++.++..+++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL 272 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIA 272 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHH
Confidence 3677999999976432 223333333321 1246778888875211 11 1111112257899999999999999
Q ss_pred HHhhccCCCCCChhHHHHHHHHHHHcCCchHHHHHHH
Q 036466 225 MKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVRTVG 261 (727)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a 261 (727)
.+.+...+.... .+++..|++.++|++--+.-+.
T Consensus 273 ~~~~~~~~~~i~---~e~l~~la~~~~gn~R~l~~~L 306 (440)
T 2z4s_A 273 RKMLEIEHGELP---EEVLNFVAENVDDNLRRLRGAI 306 (440)
T ss_dssp HHHHHHHTCCCC---TTHHHHHHHHCCSCHHHHHHHH
T ss_pred HHHHHHcCCCCC---HHHHHHHHHhcCCCHHHHHHHH
Confidence 887643332211 2456788899999887665443
No 178
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.57 E-value=9.8e-07 Score=89.45 Aligned_cols=163 Identities=11% Similarity=0.101 Sum_probs=95.4
Q ss_pred ceeecchhHHHHHHHHhcCC---------CCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCC--ceEEEEecCCC
Q 036466 50 DIIGRYEDGEKIIELLTQTS---------DGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFE--LKIWICVSEDS 118 (727)
Q Consensus 50 ~~vGr~~~~~~l~~~l~~~~---------~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~--~~~~~~~~~~~ 118 (727)
.++|.++..+.+.+++.... -........+.|+|++|+|||++|+.++.......... ..++++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD--- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence 58999999999887764210 00013455799999999999999998887432222211 22333321
Q ss_pred CHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCC---------ChhhHHHHHHhhcCCCCCCEEE
Q 036466 119 GKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNE---------DPRAWGELKSLLLGGAEGSKIL 189 (727)
Q Consensus 119 ~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~---------~~~~~~~~~~~l~~~~~~~~il 189 (727)
.+. ..............+... ++.+|+||+++.. .......+...+.....+..+|
T Consensus 109 -----------~l~-~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i 173 (309)
T 3syl_A 109 -----------DLV-GQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVI 173 (309)
T ss_dssp -----------GTC-CSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEE
T ss_pred -----------Hhh-hhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEE
Confidence 111 111111122222233222 3469999999743 4445556666665555567788
Q ss_pred EecCchHHHHHHh-----hcCCCCceecCCCChhhHHHHHHHhhcc
Q 036466 190 VTTRSNKVALIMA-----TMRGTTGYNLQELPYKDCLSLFMKCAFK 230 (727)
Q Consensus 190 iTsr~~~~~~~~~-----~~~~~~~~~l~~l~~~~~~~l~~~~~~~ 230 (727)
.|+.......... .......+.+++++.++..+++...+..
T Consensus 174 ~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~ 219 (309)
T 3syl_A 174 LAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDD 219 (309)
T ss_dssp EEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred EeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHH
Confidence 8876543221110 0011267999999999999999887754
No 179
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.56 E-value=8.7e-07 Score=91.26 Aligned_cols=192 Identities=14% Similarity=0.076 Sum_probs=107.0
Q ss_pred CCCceeecchhHHHHHHHHhcC----C--CCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCH
Q 036466 47 RPSDIIGRYEDGEKIIELLTQT----S--DGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGK 120 (727)
Q Consensus 47 ~~~~~vGr~~~~~~l~~~l~~~----~--~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~ 120 (727)
.-.+++|.+...+.|.+++..+ . .......+.+.|+|++|+|||++|+.++.. .... .+.+++.
T Consensus 49 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~--~~~~---~~~v~~~----- 118 (355)
T 2qp9_X 49 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANST---FFSVSSS----- 118 (355)
T ss_dssp CGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH--HTCE---EEEEEHH-----
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCC---EEEeeHH-----
Confidence 3456899999999999887321 0 011123457999999999999999999983 3222 1233221
Q ss_pred HHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCChh-----------hHHHHHHhhc---CCCCCC
Q 036466 121 RQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDPR-----------AWGELKSLLL---GGAEGS 186 (727)
Q Consensus 121 ~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~-----------~~~~~~~~l~---~~~~~~ 186 (727)
++ ... ........+...+......++.+|+||+++..... ....+...+. ....+.
T Consensus 119 -~l----~~~-----~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v 188 (355)
T 2qp9_X 119 -DL----VSK-----WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGV 188 (355)
T ss_dssp -HH----HSC-----C---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCE
T ss_pred -HH----hhh-----hcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCe
Confidence 11 111 11112222223333333457899999999754311 1222333332 123455
Q ss_pred EEEEecCchH-HHHHHhhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCC-chHHHHHHHh
Q 036466 187 KILVTTRSNK-VALIMATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRG-IPLAVRTVGS 262 (727)
Q Consensus 187 ~iliTsr~~~-~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal~~~a~ 262 (727)
.||.||.... +...+.. +....+.+...+.++..+++.......... ........|++.+.| .+-.|..++.
T Consensus 189 ~vI~atn~~~~ld~al~r-Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~---~~~~~l~~la~~t~G~sg~dl~~l~~ 262 (355)
T 2qp9_X 189 LVLGATNIPWQLDSAIRR-RFERRIYIPLPDLAARTTMFEINVGDTPSV---LTKEDYRTLGAMTEGYSGSDIAVVVK 262 (355)
T ss_dssp EEEEEESCGGGSCHHHHH-TCCEEEECCCCCHHHHHHHHHHHHTTSCBC---CCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEEeecCCcccCCHHHHc-ccCEEEEeCCcCHHHHHHHHHHHHhhCCCC---CCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 5665665432 2222211 233678899999999999998876432211 123456788899987 5656665554
No 180
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.56 E-value=4.4e-07 Score=92.37 Aligned_cols=193 Identities=15% Similarity=0.058 Sum_probs=109.2
Q ss_pred CCceeecchhHHHHHHHHhcC------CCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHH
Q 036466 48 PSDIIGRYEDGEKIIELLTQT------SDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKR 121 (727)
Q Consensus 48 ~~~~vGr~~~~~~l~~~l~~~------~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 121 (727)
-.+++|.+...+.|.+++..+ -.......+.+.|+|++|+|||++|+.++.. .... .+.+++.
T Consensus 17 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~---~~~v~~~------ 85 (322)
T 3eie_A 17 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANST---FFSVSSS------ 85 (322)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHH--HTCE---EEEEEHH------
T ss_pred HHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--HCCC---EEEEchH------
Confidence 356899999999999887311 0111234568999999999999999999873 3222 2233321
Q ss_pred HHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCCh-----------hhHHHHHHhhc---CCCCCCE
Q 036466 122 QIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDP-----------RAWGELKSLLL---GGAEGSK 187 (727)
Q Consensus 122 ~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~-----------~~~~~~~~~l~---~~~~~~~ 187 (727)
++ .... .......+...+......++.+|+||+++.... .....+...+. ....+..
T Consensus 86 ~l----~~~~-----~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~ 156 (322)
T 3eie_A 86 DL----VSKW-----MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVL 156 (322)
T ss_dssp HH----HTTT-----GGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEE
T ss_pred HH----hhcc-----cchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceE
Confidence 11 1000 111111122222333345678999999975321 11233333332 2334566
Q ss_pred EEEecCchH-HHHHHhhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCC-chHHHHHHHhhh
Q 036466 188 ILVTTRSNK-VALIMATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRG-IPLAVRTVGSLL 264 (727)
Q Consensus 188 iliTsr~~~-~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal~~~a~~l 264 (727)
||.||.... +...+.. .....+.++..+.++..+++...+...... ........+++.+.| .+-.+..++...
T Consensus 157 vi~atn~~~~ld~al~~-Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~---~~~~~l~~la~~t~g~sg~di~~l~~~a 231 (322)
T 3eie_A 157 VLGATNIPWQLDSAIRR-RFERRIYIPLPDLAARTTMFEINVGDTPCV---LTKEDYRTLGAMTEGYSGSDIAVVVKDA 231 (322)
T ss_dssp EEEEESCGGGSCHHHHH-HCCEEEECCCCCHHHHHHHHHHHHTTCCCC---CCHHHHHHHHHTTTTCCHHHHHHHHHHH
T ss_pred EEEecCChhhCCHHHHc-ccCeEEEeCCCCHHHHHHHHHHHhccCCCC---CCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 666666532 2111111 223678899999999999999876432211 123456788888887 565666655433
No 181
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.55 E-value=1.8e-07 Score=96.80 Aligned_cols=101 Identities=16% Similarity=0.068 Sum_probs=73.1
Q ss_pred EEEecCC-CccccccccCCCCcCcEEeccC-CccccccCccccCCCCCCEeecCCCCCCcccChhhcccccCceeEeccc
Q 036466 434 VLVLTNS-AIEVLPRKMGNLKQLRHLDLSG-NRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTK 511 (727)
Q Consensus 434 ~L~l~~~-~~~~l~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 511 (727)
.++++++ .+..+|. +..+.+|+.|+|++ |.+.+..+..|..+++|+.|+|++|.+.+..|..|.++++|+.|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 4577777 7777887 88888888888875 6644333456778888888888887766666667788888888888888
Q ss_pred ccccccccCCCCCCCcEEeccccC
Q 036466 512 QKSLLESGIGCLSSLRFLMISNCG 535 (727)
Q Consensus 512 ~~~~~~~~~~~l~~L~~L~l~~~~ 535 (727)
.++.+|..+.....|+.|++.+|.
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSC
T ss_pred ccceeCHHHcccCCceEEEeeCCC
Confidence 888666544333348888887764
No 182
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.54 E-value=9.8e-07 Score=90.10 Aligned_cols=185 Identities=15% Similarity=0.118 Sum_probs=109.4
Q ss_pred CCCCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHH
Q 036466 45 FVRPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIM 124 (727)
Q Consensus 45 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 124 (727)
|..-..++|+++.++.+.+++... ..+.++.++|++|+|||++|+.+++. .. ..+++++.+.. . .+..
T Consensus 22 P~~~~~ivg~~~~~~~l~~~l~~~-----~~~~~~L~~G~~G~GKT~la~~la~~--l~---~~~~~i~~~~~-~-~~~i 89 (324)
T 3u61_B 22 PSTIDECILPAFDKETFKSITSKG-----KIPHIILHSPSPGTGKTTVAKALCHD--VN---ADMMFVNGSDC-K-IDFV 89 (324)
T ss_dssp CCSTTTSCCCHHHHHHHHHHHHTT-----CCCSEEEECSSTTSSHHHHHHHHHHH--TT---EEEEEEETTTC-C-HHHH
T ss_pred CCCHHHHhCcHHHHHHHHHHHHcC-----CCCeEEEeeCcCCCCHHHHHHHHHHH--hC---CCEEEEccccc-C-HHHH
Confidence 344567999999999999999852 34567888899999999999999873 21 12334443332 2 2222
Q ss_pred HHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCC-hhhHHHHHHhhcCCCCCCEEEEecCchHH-HHHHh
Q 036466 125 TKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNED-PRAWGELKSLLLGGAEGSKILVTTRSNKV-ALIMA 202 (727)
Q Consensus 125 ~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~-~~~~~~~~~~l~~~~~~~~iliTsr~~~~-~~~~~ 202 (727)
+..+....... ...+++.++++|+++... ......+...+.....+.++|+||..... ...+.
T Consensus 90 ~~~~~~~~~~~---------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~ 154 (324)
T 3u61_B 90 RGPLTNFASAA---------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQ 154 (324)
T ss_dssp HTHHHHHHHBC---------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHH
T ss_pred HHHHHHHHhhc---------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHH
Confidence 32222221000 012367899999998876 55556666655543456778888765421 11111
Q ss_pred hcCCCCceecCCCChhhHHHHH-------HHhhccCCCCCChhHHHHHHHHHHHcCCchHHHHHH
Q 036466 203 TMRGTTGYNLQELPYKDCLSLF-------MKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVRTV 260 (727)
Q Consensus 203 ~~~~~~~~~l~~l~~~~~~~l~-------~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 260 (727)
. ....+.+++++.++..+++ ...+...+.... ..+.+..+++.++|.+..+...
T Consensus 155 s--R~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~--~~~~~~~l~~~~~gd~R~a~~~ 215 (324)
T 3u61_B 155 S--RCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIA--DMKVVAALVKKNFPDFRKTIGE 215 (324)
T ss_dssp H--HSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBS--CHHHHHHHHHHTCSCTTHHHHH
T ss_pred h--hCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCC--cHHHHHHHHHhCCCCHHHHHHH
Confidence 1 1257999999988844332 222222222111 1256778889998887654433
No 183
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.54 E-value=1.7e-06 Score=88.16 Aligned_cols=184 Identities=15% Similarity=0.103 Sum_probs=100.1
Q ss_pred CCcee-ecc--hhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHH
Q 036466 48 PSDII-GRY--EDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIM 124 (727)
Q Consensus 48 ~~~~v-Gr~--~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 124 (727)
...|+ |.. .....+..+...+. .....+.|+|++|+||||||+.++.. ....-..++|+++. ++.
T Consensus 10 f~~fv~g~~~~~a~~~~~~~~~~~~----~~~~~lll~G~~GtGKT~la~~i~~~--~~~~~~~~~~i~~~------~~~ 77 (324)
T 1l8q_A 10 LENFIVGEGNRLAYEVVKEALENLG----SLYNPIFIYGSVGTGKTHLLQAAGNE--AKKRGYRVIYSSAD------DFA 77 (324)
T ss_dssp SSSCCCCTTTHHHHHHHHHHHHTTT----TSCSSEEEECSSSSSHHHHHHHHHHH--HHHTTCCEEEEEHH------HHH
T ss_pred cccCCCCCcHHHHHHHHHHHHhCcC----CCCCeEEEECCCCCcHHHHHHHHHHH--HHHCCCEEEEEEHH------HHH
Confidence 34565 533 33444555554421 23457999999999999999999984 32222234566543 233
Q ss_pred HHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCCh--hhHHHHHHhhcC-CCCCCEEEEecCchHH----
Q 036466 125 TKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDP--RAWGELKSLLLG-GAEGSKILVTTRSNKV---- 197 (727)
Q Consensus 125 ~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~--~~~~~~~~~l~~-~~~~~~iliTsr~~~~---- 197 (727)
..+...+.. .... .+...+. ++.+|+||+++.... .....+...+.. ...+..+|+|+.....
T Consensus 78 ~~~~~~~~~-----~~~~----~~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~ 147 (324)
T 1l8q_A 78 QAMVEHLKK-----GTIN----EFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDG 147 (324)
T ss_dssp HHHHHHHHH-----TCHH----HHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTT
T ss_pred HHHHHHHHc-----CcHH----HHHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHH
Confidence 333333311 0111 1222222 367999999976542 222333333321 1235567777753211
Q ss_pred -HHHH-hhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchHHHH
Q 036466 198 -ALIM-ATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVR 258 (727)
Q Consensus 198 -~~~~-~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 258 (727)
...+ ........+.+++ +.++..+++...+...+.. ...+....+++.+ |+.-.+.
T Consensus 148 l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~---l~~~~l~~l~~~~-g~~r~l~ 205 (324)
T 1l8q_A 148 VSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLE---LRKEVIDYLLENT-KNVREIE 205 (324)
T ss_dssp SCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHC-SSHHHHH
T ss_pred hhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCC---CCHHHHHHHHHhC-CCHHHHH
Confidence 1111 1111125689999 9999999998877543322 2245677888888 7765443
No 184
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.53 E-value=3.1e-08 Score=101.89 Aligned_cols=86 Identities=10% Similarity=0.065 Sum_probs=51.4
Q ss_pred CCceeeEEEecCCCCCCCcchhhh-cCCCCcccEEEecCCCCccc----cCccCccccccccccccccccccccCccCCC
Q 036466 605 VGSHLRTLYVARLTPLLELPQWLL-QGSSKTLQTLAIGDCPNFMA----LPGSLKDLEALENLVIGICPKLSSLPEGMHH 679 (727)
Q Consensus 605 ~~~~L~~L~L~~~~~~~~l~~~~~-~~~~~~L~~L~L~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~ 679 (727)
.+++|++|+|.+|.........+. ...+|+|++|+|+.|.+... ++..+.++++|+.|+|++|.+....-..+..
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence 356788888877755433322222 23578899999988765442 4445567888999999888654332221211
Q ss_pred -CCccCeeeccCCc
Q 036466 680 -LTTLKTLAIEECP 692 (727)
Q Consensus 680 -l~~L~~L~l~~c~ 692 (727)
+ ...+++++++
T Consensus 330 al--g~~~~~~~~~ 341 (362)
T 2ra8_A 330 SL--PMKIDVSDSQ 341 (362)
T ss_dssp HC--CSEEECCSBC
T ss_pred Hc--CCEEEecCCc
Confidence 1 2456676654
No 185
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.50 E-value=1.2e-06 Score=86.81 Aligned_cols=174 Identities=18% Similarity=0.167 Sum_probs=93.7
Q ss_pred CceeecchhHHHHHHH-------HhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHH
Q 036466 49 SDIIGRYEDGEKIIEL-------LTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKR 121 (727)
Q Consensus 49 ~~~vGr~~~~~~l~~~-------l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 121 (727)
..++|....++++... +... .....+.+.|+|++|+|||++|+.++.. .... .+.+.+..
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~---~~~~~~~vLl~G~~GtGKT~la~~ia~~--~~~~---~~~i~~~~----- 99 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNS---DRTPLVSVLLEGPPHSGKTALAAKIAEE--SNFP---FIKICSPD----- 99 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHC---SSCSEEEEEEECSTTSSHHHHHHHHHHH--HTCS---EEEEECGG-----
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhcc---CCCCCeEEEEECCCCCcHHHHHHHHHHH--hCCC---EEEEeCHH-----
Confidence 4588988887776663 3221 1245789999999999999999999873 2211 12233221
Q ss_pred HHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCC----------ChhhHHHHHHhhcC---CCCCCEE
Q 036466 122 QIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNE----------DPRAWGELKSLLLG---GAEGSKI 188 (727)
Q Consensus 122 ~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~----------~~~~~~~~~~~l~~---~~~~~~i 188 (727)
.+.+. ............+......++.+|+||+++.. .......+...+.. ......|
T Consensus 100 --------~~~g~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~i 170 (272)
T 1d2n_A 100 --------KMIGF-SETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLI 170 (272)
T ss_dssp --------GCTTC-CHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEE
T ss_pred --------HhcCC-chHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEE
Confidence 11000 00000111222333334457899999998542 11112223333332 1223446
Q ss_pred EEecCchHHHHHHhh-cCCCCceecCCCCh-hhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCC
Q 036466 189 LVTTRSNKVALIMAT-MRGTTGYNLQELPY-KDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRG 252 (727)
Q Consensus 189 liTsr~~~~~~~~~~-~~~~~~~~l~~l~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g 252 (727)
|.||........... ......+.+++++. ++..+++.+.. . ...+.+..+++.+.|
T Consensus 171 i~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~----~----~~~~~~~~l~~~~~g 228 (272)
T 1d2n_A 171 IGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG----N----FKDKERTTIAQQVKG 228 (272)
T ss_dssp EEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT----C----SCHHHHHHHHHHHTT
T ss_pred EEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC----C----CCHHHHHHHHHHhcC
Confidence 667776654333111 12236689999988 66666665531 1 123456778888877
No 186
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.49 E-value=1.1e-06 Score=90.78 Aligned_cols=194 Identities=14% Similarity=0.038 Sum_probs=107.7
Q ss_pred CCCceeecchhHHHHHHHHhcC---CC---CCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCH
Q 036466 47 RPSDIIGRYEDGEKIIELLTQT---SD---GESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGK 120 (727)
Q Consensus 47 ~~~~~vGr~~~~~~l~~~l~~~---~~---~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~ 120 (727)
.-.+++|.+..++.|.+++..+ .+ ......+.+.|+|++|+|||++|+.++.. ... ..+++++.....
T Consensus 82 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~---~~~~i~~~~l~~- 155 (357)
T 3d8b_A 82 NWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ--SGA---TFFSISASSLTS- 155 (357)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH--TTC---EEEEEEGGGGCC-
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH--cCC---eEEEEehHHhhc-
Confidence 3456899999999999887431 00 00134568999999999999999999873 221 123444432110
Q ss_pred HHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCC-----------hhhHHHHHHhhcCC----CCC
Q 036466 121 RQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNED-----------PRAWGELKSLLLGG----AEG 185 (727)
Q Consensus 121 ~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~-----------~~~~~~~~~~l~~~----~~~ 185 (727)
.............+......++.+|+||+++... ......+...+... ..+
T Consensus 156 --------------~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~ 221 (357)
T 3d8b_A 156 --------------KWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDR 221 (357)
T ss_dssp --------------SSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCC
T ss_pred --------------cccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCC
Confidence 0000011111122222223567899999995421 01122333333321 234
Q ss_pred CEEEEecCch-HHHHHHhhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCC-chHHHHHHHhh
Q 036466 186 SKILVTTRSN-KVALIMATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRG-IPLAVRTVGSL 263 (727)
Q Consensus 186 ~~iliTsr~~-~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal~~~a~~ 263 (727)
..||.||... .+...... +....+.+...+.++..+++...+...+.. ...+....+++.+.| .+-.+..++..
T Consensus 222 v~vI~atn~~~~l~~~l~~-Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~---l~~~~l~~la~~t~G~s~~dl~~l~~~ 297 (357)
T 3d8b_A 222 ILVVGATNRPQEIDEAARR-RLVKRLYIPLPEASARKQIVINLMSKEQCC---LSEEEIEQIVQQSDAFSGADMTQLCRE 297 (357)
T ss_dssp EEEEEEESCGGGBCHHHHT-TCCEEEECCCCCHHHHHHHHHHHHHTSCBC---CCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred EEEEEecCChhhCCHHHHh-hCceEEEeCCcCHHHHHHHHHHHHhhcCCC---ccHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 4555566543 22222211 223568899999999999988766432221 123567888888888 66677766654
Q ss_pred h
Q 036466 264 L 264 (727)
Q Consensus 264 l 264 (727)
.
T Consensus 298 a 298 (357)
T 3d8b_A 298 A 298 (357)
T ss_dssp H
T ss_pred H
Confidence 3
No 187
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.49 E-value=1.3e-06 Score=89.68 Aligned_cols=185 Identities=13% Similarity=0.167 Sum_probs=110.4
Q ss_pred CCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhc-CC-ceEEEEecCCCCHHHHH
Q 036466 47 RPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEH-FE-LKIWICVSEDSGKRQIM 124 (727)
Q Consensus 47 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~-f~-~~~~~~~~~~~~~~~~~ 124 (727)
.-..++|.+..++.|..++... ....++++|++|+||||+|+.++.. .... +. .+..++.....+.. ..
T Consensus 23 ~~~~~~g~~~~~~~L~~~i~~g------~~~~~ll~Gp~G~GKTtla~~la~~--l~~~~~~~~~~~~~~~~~~~~~-~i 93 (340)
T 1sxj_C 23 TLDEVYGQNEVITTVRKFVDEG------KLPHLLFYGPPGTGKTSTIVALARE--IYGKNYSNMVLELNASDDRGID-VV 93 (340)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTT------CCCCEEEECSSSSSHHHHHHHHHHH--HHTTSHHHHEEEECTTSCCSHH-HH
T ss_pred cHHHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHH--HcCCCccceEEEEcCcccccHH-HH
Confidence 3356789999999999988762 2223899999999999999999874 2211 11 11222222211221 11
Q ss_pred HHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEEecCchH-HHHHHhh
Q 036466 125 TKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNK-VALIMAT 203 (727)
Q Consensus 125 ~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~iliTsr~~~-~~~~~~~ 203 (727)
++.+..+.... ..+.+.+-++|+|+++.......+.+...+......+++++++.... +.....
T Consensus 94 r~~i~~~~~~~--------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~- 158 (340)
T 1sxj_C 94 RNQIKDFASTR--------------QIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALL- 158 (340)
T ss_dssp HTHHHHHHHBC--------------CSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH-
T ss_pred HHHHHHHHhhc--------------ccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHH-
Confidence 12222111000 00113467899999988776666667666655445667777665432 111111
Q ss_pred cCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchHHHHH
Q 036466 204 MRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVRT 259 (727)
Q Consensus 204 ~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 259 (727)
.....+.+.+++.++..+.+...+...+.. ...+.++.+++.++|.+--+.-
T Consensus 159 -sR~~~~~~~~l~~~~~~~~l~~~~~~~~~~---i~~~~~~~i~~~s~G~~r~~~~ 210 (340)
T 1sxj_C 159 -SQCTRFRFQPLPQEAIERRIANVLVHEKLK---LSPNAEKALIELSNGDMRRVLN 210 (340)
T ss_dssp -TTSEEEECCCCCHHHHHHHHHHHHHTTTCC---BCHHHHHHHHHHHTTCHHHHHH
T ss_pred -hhceeEeccCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHH
Confidence 123578999999999999988766332222 2235678899999998875443
No 188
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.48 E-value=2e-07 Score=86.71 Aligned_cols=47 Identities=28% Similarity=0.388 Sum_probs=39.6
Q ss_pred CCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcc
Q 036466 47 RPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 47 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
....++||+++++.+.+++.. ...+.+.|+|++|+|||++|+.++..
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~------~~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILSR------RTKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHTS------SSSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred ccchhhcchHHHHHHHHHHhC------CCCCceEEECCCCCCHHHHHHHHHHH
Confidence 345699999999999999866 23456899999999999999999874
No 189
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.45 E-value=3.6e-06 Score=84.70 Aligned_cols=192 Identities=14% Similarity=0.087 Sum_probs=104.3
Q ss_pred CCCceeecchhHHHHHHHHhcCC------CCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCH
Q 036466 47 RPSDIIGRYEDGEKIIELLTQTS------DGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGK 120 (727)
Q Consensus 47 ~~~~~vGr~~~~~~l~~~l~~~~------~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~ 120 (727)
.-..++|.+..++.|.+++..+. .+-....+.+.|+|++|+|||++|+.++.. .... .+.+++....
T Consensus 19 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~--~~~~---~~~i~~~~l~-- 91 (297)
T 3b9p_A 19 EWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATE--CSAT---FLNISAASLT-- 91 (297)
T ss_dssp CGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHH--TTCE---EEEEESTTTS--
T ss_pred CHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCC---eEEeeHHHHh--
Confidence 33568999999999998874310 000123568999999999999999999873 2211 2234432211
Q ss_pred HHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCCh-----------hhHHHHHHhhcC---C--CC
Q 036466 121 RQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDP-----------RAWGELKSLLLG---G--AE 184 (727)
Q Consensus 121 ~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~-----------~~~~~~~~~l~~---~--~~ 184 (727)
. .............+......++.+|+||+++.... .....+...+.. . ..
T Consensus 92 ------------~-~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 158 (297)
T 3b9p_A 92 ------------S-KYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGD 158 (297)
T ss_dssp ------------S-SSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------
T ss_pred ------------h-cccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCC
Confidence 0 00111111122222223335678999999965411 111122222221 1 13
Q ss_pred CCEEEEecCchH-HHHHHhhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchH-HHHHHHh
Q 036466 185 GSKILVTTRSNK-VALIMATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPL-AVRTVGS 262 (727)
Q Consensus 185 ~~~iliTsr~~~-~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~a~ 262 (727)
+..||.||.... +...... .....+.++..+.++..+++...+...+.. ...+....+++.+.|.+- .+..++.
T Consensus 159 ~v~vi~~tn~~~~l~~~l~~-R~~~~i~~~~p~~~~r~~il~~~~~~~~~~---~~~~~~~~la~~~~g~~~~~l~~l~~ 234 (297)
T 3b9p_A 159 RIVVLAATNRPQELDEAALR-RFTKRVYVSLPDEQTRELLLNRLLQKQGSP---LDTEALRRLAKITDGYSGSDLTALAK 234 (297)
T ss_dssp CEEEEEEESCGGGBCHHHHH-HCCEEEECCCCCHHHHHHHHHHHHGGGSCC---SCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred cEEEEeecCChhhCCHHHHh-hCCeEEEeCCcCHHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 455666666532 1111111 122567888888888888887766433221 123556788899988775 6655544
No 190
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.44 E-value=2.3e-06 Score=89.61 Aligned_cols=194 Identities=14% Similarity=0.070 Sum_probs=104.9
Q ss_pred CCCCceeecchhHHHHHHHHhcCC------CCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCC
Q 036466 46 VRPSDIIGRYEDGEKIIELLTQTS------DGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSG 119 (727)
Q Consensus 46 ~~~~~~vGr~~~~~~l~~~l~~~~------~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~ 119 (727)
..-..++|.+..++.|.+++..+. ..-....+.++|+|++|+|||++|+.++.. .... .+.+++.....
T Consensus 112 ~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~--~~~~---~~~v~~~~l~~ 186 (389)
T 3vfd_A 112 VKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE--SNAT---FFNISAASLTS 186 (389)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH--TTCE---EEEECSCCC--
T ss_pred CChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh--hcCc---EEEeeHHHhhc
Confidence 334578999999999998873210 000123468999999999999999999763 2221 23333322111
Q ss_pred HHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCC-----------hhhHHHHHHhhc---CC-CC
Q 036466 120 KRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNED-----------PRAWGELKSLLL---GG-AE 184 (727)
Q Consensus 120 ~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~-----------~~~~~~~~~~l~---~~-~~ 184 (727)
. ........+...+.......+.+|+||+++... ......+...+. .. ..
T Consensus 187 --~-------------~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 251 (389)
T 3vfd_A 187 --K-------------YVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDD 251 (389)
T ss_dssp --------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----
T ss_pred --c-------------ccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCC
Confidence 0 001111122222233333466899999996531 111112222222 11 23
Q ss_pred CCEEEEecCchH-HHHHHhhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchH-HHHHHHh
Q 036466 185 GSKILVTTRSNK-VALIMATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPL-AVRTVGS 262 (727)
Q Consensus 185 ~~~iliTsr~~~-~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~a~ 262 (727)
...||.||.... +...... +....+.+...+.++..+++...+...+.. ...+.+..+++.+.|..- .+..++.
T Consensus 252 ~v~vI~atn~~~~l~~~l~~-R~~~~i~i~~p~~~~r~~il~~~~~~~~~~---l~~~~~~~la~~~~g~~~~~l~~L~~ 327 (389)
T 3vfd_A 252 RVLVMGATNRPQELDEAVLR-RFIKRVYVSLPNEETRLLLLKNLLCKQGSP---LTQKELAQLARMTDGYSGSDLTALAK 327 (389)
T ss_dssp CEEEEEEESCGGGCCHHHHT-TCCEEEECCCCCHHHHHHHHHHHHTTSCCC---SCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CEEEEEecCCchhcCHHHHc-CcceEEEcCCcCHHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 455555665432 2111111 222468899999999999998876443222 223456788888887544 6666554
Q ss_pred h
Q 036466 263 L 263 (727)
Q Consensus 263 ~ 263 (727)
.
T Consensus 328 ~ 328 (389)
T 3vfd_A 328 D 328 (389)
T ss_dssp H
T ss_pred H
Confidence 3
No 191
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.44 E-value=2.7e-06 Score=90.31 Aligned_cols=195 Identities=14% Similarity=0.103 Sum_probs=106.3
Q ss_pred CCCCceeecchhHHHHHHHHhcC----C--CCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCC
Q 036466 46 VRPSDIIGRYEDGEKIIELLTQT----S--DGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSG 119 (727)
Q Consensus 46 ~~~~~~vGr~~~~~~l~~~l~~~----~--~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~ 119 (727)
..-.+++|.+...+.|.+++..+ . .+.....+.+.|+|++|+|||++|+.++.. . ....|+.+...
T Consensus 131 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~--~----~~~~~~~v~~~-- 202 (444)
T 2zan_A 131 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE--A----NNSTFFSISSS-- 202 (444)
T ss_dssp CCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHH--C----CSSEEEEECCC--
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH--c----CCCCEEEEeHH--
Confidence 33466899999999999877321 0 011124578999999999999999999973 2 11123333221
Q ss_pred HHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCC-------hhhHHHH----HHhhcC---CCCC
Q 036466 120 KRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNED-------PRAWGEL----KSLLLG---GAEG 185 (727)
Q Consensus 120 ~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~-------~~~~~~~----~~~l~~---~~~~ 185 (727)
++. ....+. ...... ..+......++.+|+||+++... ......+ ...+.. ...+
T Consensus 203 --~l~----~~~~g~--~~~~~~---~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~ 271 (444)
T 2zan_A 203 --DLV----SKWLGE--SEKLVK---NLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDG 271 (444)
T ss_dssp -----------------CCCTHH---HHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSS
T ss_pred --HHH----hhhcch--HHHHHH---HHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCC
Confidence 111 111011 111222 22222233578999999997641 1111222 222222 1345
Q ss_pred CEEEEecCchH-HHHHHhhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCC-chHHHHHHHhh
Q 036466 186 SKILVTTRSNK-VALIMATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRG-IPLAVRTVGSL 263 (727)
Q Consensus 186 ~~iliTsr~~~-~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal~~~a~~ 263 (727)
..||.||.... +...+.. +....+.+...+.++..+++.......... ........|++.+.| .+-.+..++..
T Consensus 272 v~vI~atn~~~~ld~al~r-Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~---l~~~~l~~la~~t~G~sgadl~~l~~~ 347 (444)
T 2zan_A 272 ILVLGATNIPWVLDSAIRR-RFEKRIYIPLPEAHARAAMFRLHLGSTQNS---LTEADFQELGRKTDGYSGADISIIVRD 347 (444)
T ss_dssp CEEEEEESCGGGSCHHHHT-TCCEEEECCCCCHHHHHHHHHHHHTTSCEE---CCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred EEEEecCCCccccCHHHHh-hcceEEEeCCcCHHHHHHHHHHHHhcCCCC---CCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 66666665532 1111111 223578888888888999998876332211 123456788899988 55566655543
No 192
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.39 E-value=2.4e-07 Score=95.22 Aligned_cols=82 Identities=17% Similarity=0.183 Sum_probs=37.2
Q ss_pred hhcCCCcceEEEecCCCcc----------ccccccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccC
Q 036466 425 CISKSKSLRVLVLTNSAIE----------VLPRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELP 494 (727)
Q Consensus 425 ~~~~~~~L~~L~l~~~~~~----------~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 494 (727)
+..++++|+.|.+...... .+...+..+++|+.|++++|... .++. + .+++|+.|++..|.......
T Consensus 134 s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l 210 (362)
T 2ra8_A 134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVV 210 (362)
T ss_dssp THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHH
T ss_pred hhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHH
Confidence 3455667777776543221 11122334555666666554211 2222 2 24556666665444332222
Q ss_pred hhhc--ccccCceeEec
Q 036466 495 KDIR--YLVSLRMFVVT 509 (727)
Q Consensus 495 ~~l~--~l~~L~~L~l~ 509 (727)
..+. .+++|++|+|+
T Consensus 211 ~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 211 EDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHHHHSBCTTCCEEEEE
T ss_pred HHHHHccCCCCcEEEEe
Confidence 2222 45555555553
No 193
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.35 E-value=6.7e-06 Score=86.37 Aligned_cols=59 Identities=17% Similarity=0.251 Sum_probs=27.0
Q ss_pred hhcCCCcceEEEecCCCccccccccCCCCcCcEEeccCCcccccc-CccccCCCCCCEeecC
Q 036466 425 CISKSKSLRVLVLTNSAIEVLPRKMGNLKQLRHLDLSGNRKIKKL-PNSICELQSLQTLNLG 485 (727)
Q Consensus 425 ~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~ 485 (727)
+|..|++|+.+.+.++...--...|..+.+|+.+.+..+ +..+ ...+.++..|+.+.+.
T Consensus 157 aF~~c~~L~~i~l~~~~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~ 216 (394)
T 4fs7_A 157 AFATCESLEYVSLPDSMETLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFP 216 (394)
T ss_dssp TTTTCTTCCEEECCTTCCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCC
T ss_pred hhcccCCCcEEecCCccceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecC
Confidence 455566666666554332211223455555555555433 1222 2334445555555543
No 194
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.32 E-value=3.4e-06 Score=85.53 Aligned_cols=136 Identities=18% Similarity=0.294 Sum_probs=77.6
Q ss_pred ceeecchhHHHHHHHHhcCC---CCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHH
Q 036466 50 DIIGRYEDGEKIIELLTQTS---DGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTK 126 (727)
Q Consensus 50 ~~vGr~~~~~~l~~~l~~~~---~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 126 (727)
.++|.+..++.+...+.... .....+...++++|++|+|||++|+.++.. ....-...+++++....... ....
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~--~~~~~~~~~~~~~~~~~~~~-~~~~ 94 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEKH-AVSR 94 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHH--HHSCGGGEEEEEGGGCCSTT-HHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHH--HcCCCcceEEeecccccccc-cHHH
Confidence 47899999999988886531 111123458999999999999999999873 32222234566665433221 1111
Q ss_pred HHHHhcCC-CCCCCC-hHHHHHHHHHHhCCceEEEEEcCCCCCChhhHHHHHHhhcCCC-----------CCCEEEEecC
Q 036466 127 IINSVTGG-NHGNLD-PDRLQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLGGA-----------EGSKILVTTR 193 (727)
Q Consensus 127 ll~~l~~~-~~~~~~-~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~-----------~~~~iliTsr 193 (727)
+ ++.. ...... ...+...+.. ....+++||+++.........+...+.... .++.+|.||.
T Consensus 95 l---~g~~~~~~~~~~~~~~~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn 168 (311)
T 4fcw_A 95 L---IGAPPGYVGYEEGGQLTEAVRR---RPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSN 168 (311)
T ss_dssp H---HCCCTTSTTTTTCCHHHHHHHH---CSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEES
T ss_pred h---cCCCCccccccccchHHHHHHh---CCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecc
Confidence 1 1111 011111 1122222222 234799999998887766666666664321 2344777776
Q ss_pred c
Q 036466 194 S 194 (727)
Q Consensus 194 ~ 194 (727)
.
T Consensus 169 ~ 169 (311)
T 4fcw_A 169 L 169 (311)
T ss_dssp T
T ss_pred c
Confidence 5
No 195
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.29 E-value=1.4e-05 Score=84.04 Aligned_cols=82 Identities=12% Similarity=0.127 Sum_probs=47.6
Q ss_pred CCCCCceeeEEEecCCCCCCCcchhhhcCCCCcccEEEecCCCCcccc-CccCccccccccccccccccccccC-ccCCC
Q 036466 602 RKNVGSHLRTLYVARLTPLLELPQWLLQGSSKTLQTLAIGDCPNFMAL-PGSLKDLEALENLVIGICPKLSSLP-EGMHH 679 (727)
Q Consensus 602 ~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~l~-~~l~~ 679 (727)
.+..|.+|+.+.+..+ +..++.... ..|.+|++++|..+ ...+ ...|.++.+|+.+.+..+ +..+. .++.+
T Consensus 292 ~F~~~~~L~~i~l~~~--i~~I~~~aF-~~c~~L~~i~lp~~--v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~ 364 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS--VKFIGEEAF-ESCTSLVSIDLPYL--VEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQG 364 (394)
T ss_dssp TTTTCTTCCEEEECTT--CCEECTTTT-TTCTTCCEECCCTT--CCEECTTTTTTCTTCCEECCCTT--CCEECTTTBTT
T ss_pred cccccccccccccccc--cceechhhh-cCCCCCCEEEeCCc--ccEEhHHhccCCCCCCEEEECcc--ccEehHHHhhC
Confidence 3445667777776543 333332221 45677777777543 3333 345677777777777654 33332 45677
Q ss_pred CCccCeeeccC
Q 036466 680 LTTLKTLAIEE 690 (727)
Q Consensus 680 l~~L~~L~l~~ 690 (727)
|++|+.+++..
T Consensus 365 C~~L~~i~lp~ 375 (394)
T 4fs7_A 365 CINLKKVELPK 375 (394)
T ss_dssp CTTCCEEEEEG
T ss_pred CCCCCEEEECC
Confidence 77777777753
No 196
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.28 E-value=6.3e-06 Score=82.86 Aligned_cols=183 Identities=16% Similarity=0.150 Sum_probs=101.6
Q ss_pred CceeecchhHHHHHHHHhcCCC-------CCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHH
Q 036466 49 SDIIGRYEDGEKIIELLTQTSD-------GESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKR 121 (727)
Q Consensus 49 ~~~vGr~~~~~~l~~~l~~~~~-------~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 121 (727)
.+++|.++.++.|.+++..+.. ..-...+.+.|+|++|+|||++|+.++.. .... ++.+. ..
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~--~~~~-----~i~v~----~~ 83 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQAN-----FISIK----GP 83 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH--TTCE-----EEEEC----HH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH--hCCC-----EEEEE----hH
Confidence 4689999999999888753200 00023567999999999999999999973 2221 22221 22
Q ss_pred HHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCC--------------hhhHHHHHHhhcC--CCCC
Q 036466 122 QIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNED--------------PRAWGELKSLLLG--GAEG 185 (727)
Q Consensus 122 ~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~--------------~~~~~~~~~~l~~--~~~~ 185 (727)
++.. ...+. ....+...+.......+.+|+||+++... ......+...+.. ...+
T Consensus 84 ~l~~----~~~g~-----~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 154 (301)
T 3cf0_A 84 ELLT----MWFGE-----SEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKN 154 (301)
T ss_dssp HHHH----HHHTT-----CTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSS
T ss_pred HHHh----hhcCc-----hHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCC
Confidence 2222 22111 11223334444444578999999996421 1112344444432 2335
Q ss_pred CEEEEecCchHHH-HHHhh-cCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchH
Q 036466 186 SKILVTTRSNKVA-LIMAT-MRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPL 255 (727)
Q Consensus 186 ~~iliTsr~~~~~-~~~~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 255 (727)
..||.||...... ..... ......+.++..+.++..+++.............. ...++..+.|.|-
T Consensus 155 v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~----~~~la~~~~g~sg 222 (301)
T 3cf0_A 155 VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVD----LEFLAKMTNGFSG 222 (301)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHTCSSCCH
T ss_pred EEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccch----HHHHHHHcCCCCH
Confidence 6677777654221 11111 12235789999999999999887664332211111 2445566666554
No 197
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.26 E-value=1.7e-06 Score=89.38 Aligned_cols=91 Identities=20% Similarity=0.199 Sum_probs=76.3
Q ss_pred hhhhhcCCCcceEEEecC-CCccccc-cccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcc
Q 036466 422 VTSCISKSKSLRVLVLTN-SAIEVLP-RKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRY 499 (727)
Q Consensus 422 ~~~~~~~~~~L~~L~l~~-~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 499 (727)
+|. +..+++|+.|+|++ |.+..++ ..|..+++|++|+|++|.+.+..|..|..+++|+.|+|++|.+....+..+..
T Consensus 24 ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 102 (347)
T 2ifg_A 24 LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQG 102 (347)
T ss_dssp TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCS
T ss_pred cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHccc
Confidence 556 88999999999996 9999877 46899999999999999976666778899999999999997766444445555
Q ss_pred cccCceeEecccccc
Q 036466 500 LVSLRMFVVTTKQKS 514 (727)
Q Consensus 500 l~~L~~L~l~~~~~~ 514 (727)
+. |+.|++.+|.+.
T Consensus 103 ~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 103 LS-LQELVLSGNPLH 116 (347)
T ss_dssp CC-CCEEECCSSCCC
T ss_pred CC-ceEEEeeCCCcc
Confidence 54 999999999876
No 198
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.24 E-value=8.6e-06 Score=83.26 Aligned_cols=181 Identities=17% Similarity=0.127 Sum_probs=100.8
Q ss_pred CceeecchhHHHHHHHHhcCCC-------CCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHH
Q 036466 49 SDIIGRYEDGEKIIELLTQTSD-------GESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKR 121 (727)
Q Consensus 49 ~~~vGr~~~~~~l~~~l~~~~~-------~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 121 (727)
.++.|-++..++|.+.+.-+.. ..-..++-+.++|+||+|||.||++++. .....| +.+..+.
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~--e~~~~f---~~v~~s~----- 217 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAH--HTDCKF---IRVSGAE----- 217 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHH--HHTCEE---EEEEGGG-----
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHH--hhCCCc---eEEEhHH-----
Confidence 5578899999998877643200 0113467899999999999999999998 333332 2333221
Q ss_pred HHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCCh--------------hhHHHHHHhhcC--CCCC
Q 036466 122 QIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDP--------------RAWGELKSLLLG--GAEG 185 (727)
Q Consensus 122 ~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~--------------~~~~~~~~~l~~--~~~~ 185 (727)
+ ...+.+.....+.+.+..+-...+++|+||++|..-. .....+...+.. ...+
T Consensus 218 ---------l-~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ 287 (405)
T 4b4t_J 218 ---------L-VQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKN 287 (405)
T ss_dssp ---------G-SCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCC
T ss_pred ---------h-hccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCC
Confidence 1 0111111222222233333345789999999976310 012233333332 2334
Q ss_pred CEEEEecCch-HHHHHHh-hcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCc
Q 036466 186 SKILVTTRSN-KVALIMA-TMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGI 253 (727)
Q Consensus 186 ~~iliTsr~~-~~~~~~~-~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 253 (727)
..||.||... .+...+. .-+.+..+.++.-+.++..++|+............+ ...+++.+.|.
T Consensus 288 V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvd----l~~lA~~t~G~ 353 (405)
T 4b4t_J 288 IKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGIN----LRKVAEKMNGC 353 (405)
T ss_dssp EEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCC----HHHHHHHCCSC
T ss_pred eEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHCCCC
Confidence 5556666543 3333222 223457899999899999999987653322221111 46677777663
No 199
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.24 E-value=6.6e-07 Score=78.90 Aligned_cols=110 Identities=9% Similarity=0.044 Sum_probs=66.3
Q ss_pred ceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHH
Q 036466 50 DIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIIN 129 (727)
Q Consensus 50 ~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~ 129 (727)
.++|++..++++.+.+.... .....|.|+|++|+|||++|+.++.... ..+++++... ..+..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~----~~~~~vll~G~~GtGKt~lA~~i~~~~~------~~~~~~~~~~--~~~~~----- 67 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA----KRTSPVFLTGEAGSPFETVARYFHKNGT------PWVSPARVEY--LIDMP----- 67 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH----TCSSCEEEEEETTCCHHHHHGGGCCTTS------CEECCSSTTH--HHHCH-----
T ss_pred CceeCCHHHHHHHHHHHHHh----CCCCcEEEECCCCccHHHHHHHHHHhCC------CeEEechhhC--ChHhh-----
Confidence 57899999999998876532 1223588999999999999998887422 2223333211 11111
Q ss_pred HhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCChhhHHHHHHhhcCC-CCCCEEEEecCc
Q 036466 130 SVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLGG-AEGSKILVTTRS 194 (727)
Q Consensus 130 ~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~-~~~~~iliTsr~ 194 (727)
..+.+. .+.-+++||+++.........+...+... ..+.++|.||..
T Consensus 68 ----------------~~~~~~--a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 68 ----------------MELLQK--AEGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp ----------------HHHHHH--TTTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred ----------------hhHHHh--CCCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 111111 12347889999988766666666655432 345778887753
No 200
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.22 E-value=7.8e-06 Score=81.71 Aligned_cols=149 Identities=13% Similarity=0.010 Sum_probs=94.6
Q ss_pred ecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchh-hHhcCCceEEEEecC-CCCHHHHHHHHHHH
Q 036466 53 GRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQR-VEEHFELKIWICVSE-DSGKRQIMTKIINS 130 (727)
Q Consensus 53 Gr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~-~~~~f~~~~~~~~~~-~~~~~~~~~~ll~~ 130 (727)
|-++.++.|.+.+... . .+...++|++|+||||+|+.++.... .........+++... ..++ +..+++...
T Consensus 1 g~~~~~~~L~~~i~~~-----~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~i-d~ir~li~~ 73 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS-----E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGI-DDIRTIKDF 73 (305)
T ss_dssp ---CHHHHHHHHHHTC-----S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCH-HHHHHHHHH
T ss_pred ChHHHHHHHHHHHHCC-----C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCH-HHHHHHHHH
Confidence 4567788888888762 2 67899999999999999999986311 011122333443322 2222 223344444
Q ss_pred hcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEEecCch-HHHHHHhhcCCCCc
Q 036466 131 VTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSN-KVALIMATMRGTTG 209 (727)
Q Consensus 131 l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~iliTsr~~-~~~~~~~~~~~~~~ 209 (727)
+...+. .+++-++|+|+++.......+.+...+-...+.+.+|++|..+ .+...+.. . .
T Consensus 74 ~~~~p~----------------~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~S--R--~ 133 (305)
T 2gno_A 74 LNYSPE----------------LYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKS--R--V 133 (305)
T ss_dssp HTSCCS----------------SSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHT--T--S
T ss_pred Hhhccc----------------cCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHc--e--e
Confidence 421111 1346688999999988778888888887666677777766543 22222222 2 8
Q ss_pred eecCCCChhhHHHHHHHhh
Q 036466 210 YNLQELPYKDCLSLFMKCA 228 (727)
Q Consensus 210 ~~l~~l~~~~~~~l~~~~~ 228 (727)
+.++++++++..+++.+..
T Consensus 134 ~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 134 FRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp EEEECCCCHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHHh
Confidence 9999999999999998865
No 201
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=98.22 E-value=6.5e-06 Score=82.64 Aligned_cols=162 Identities=13% Similarity=0.175 Sum_probs=89.9
Q ss_pred CceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHH
Q 036466 49 SDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKII 128 (727)
Q Consensus 49 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll 128 (727)
..++|+...+.++.+.+.... .....|.|+|++|+|||++|+.++.... +.. ...+.+++... ...++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a----~~~~~vLi~Ge~GtGKt~lAr~i~~~~~-~~~-~~~v~v~~~~~--~~~l~~~-- 71 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVA----PSDATVLIHGDSGTGKELVARALHACSA-RSD-RPLVTLNCAAL--NESLLES-- 71 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHC----STTSCEEEESCTTSCHHHHHHHHHHHSS-CSS-SCCCEEECSSC--CHHHHHH--
T ss_pred CCcEECCHHHHHHHHHHHHHh----CCCCcEEEECCCCchHHHHHHHHHHhCc-ccC-CCeEEEeCCCC--ChHHHHH--
Confidence 358999999999998887643 2234688999999999999999987321 111 12235566543 2222222
Q ss_pred HHhcCCCCCCCC--hHHHHHHHHHHhCCceEEEEEcCCCCCChhhHHHHHHhhcCC-----------CCCCEEEEecCch
Q 036466 129 NSVTGGNHGNLD--PDRLQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLGG-----------AEGSKILVTTRSN 195 (727)
Q Consensus 129 ~~l~~~~~~~~~--~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~-----------~~~~~iliTsr~~ 195 (727)
.+.+....... .......+... ..-+|+||+++.........+...+... ....+||.||...
T Consensus 72 -~lfg~~~g~~tg~~~~~~g~~~~a---~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~ 147 (304)
T 1ojl_A 72 -ELFGHEKGAFTGADKRREGRFVEA---DGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRD 147 (304)
T ss_dssp -HHTCCCSSCCC---CCCCCHHHHH---TTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSC
T ss_pred -HhcCccccccCchhhhhcCHHHhc---CCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCcc
Confidence 23222110000 00000112221 2347899999988766666666666542 1346788777653
Q ss_pred HHHHHHh----------hcCCCCceecCCCC--hhhHHHHHHH
Q 036466 196 KVALIMA----------TMRGTTGYNLQELP--YKDCLSLFMK 226 (727)
Q Consensus 196 ~~~~~~~----------~~~~~~~~~l~~l~--~~~~~~l~~~ 226 (727)
.. .... .. ....+.++++. .+|...++..
T Consensus 148 l~-~~v~~g~fr~~L~~Rl-~~~~i~lPpL~eR~edi~~l~~~ 188 (304)
T 1ojl_A 148 LA-EEVSAGRFRQDLYYRL-NVVAIEMPSLRQRREDIPLLADH 188 (304)
T ss_dssp HH-HHHHHTSSCHHHHHHH-SSEEEECCCSGGGGGGHHHHHHH
T ss_pred HH-HHHHhCCcHHHHHhhc-CeeEEeccCHHHhHhhHHHHHHH
Confidence 11 1110 00 02457899998 5666655543
No 202
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.21 E-value=7.2e-06 Score=94.87 Aligned_cols=160 Identities=18% Similarity=0.207 Sum_probs=85.1
Q ss_pred CCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHh-----cCCceEEEEecCCCCHH
Q 036466 47 RPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEE-----HFELKIWICVSEDSGKR 121 (727)
Q Consensus 47 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~-----~f~~~~~~~~~~~~~~~ 121 (727)
.-..++||++++..+.+.+... ....++|+|++|+|||++|+.++....... .-..+++++++....
T Consensus 168 ~ld~viGr~~~i~~l~~~l~~~------~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~-- 239 (854)
T 1qvr_A 168 KLDPVIGRDEEIRRVIQILLRR------TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA-- 239 (854)
T ss_dssp CSCCCCSCHHHHHHHHHHHHCS------SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-------
T ss_pred CCcccCCcHHHHHHHHHHHhcC------CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc--
Confidence 3456899999999999998662 234578999999999999999998421110 011233444322100
Q ss_pred HHHHHHHHHhcCCCCCCCChHH-HHHHHHHHhC-CceEEEEEcCCCCCC--------hhhHHHHHHhhcCCCCCCEEEEe
Q 036466 122 QIMTKIINSVTGGNHGNLDPDR-LQKVLRDSLN-GKRYLLVMDDVWNED--------PRAWGELKSLLLGGAEGSKILVT 191 (727)
Q Consensus 122 ~~~~~ll~~l~~~~~~~~~~~~-~~~~l~~~l~-~~~~LlvlDd~~~~~--------~~~~~~~~~~l~~~~~~~~iliT 191 (727)
+..... .... +...+..... +++.+|+||+++... ......+...+.. .+..+|.+
T Consensus 240 -----------g~~~~g-~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~--~~i~~I~a 305 (854)
T 1qvr_A 240 -----------GAKYRG-EFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR--GELRLIGA 305 (854)
T ss_dssp ------------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHT--TCCCEEEE
T ss_pred -----------cCccch-HHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC--CCeEEEEe
Confidence 000111 1222 2223333323 367999999997643 1111123333322 23446655
Q ss_pred cCchHHHHH---HhhcCCCCceecCCCChhhHHHHHHHhh
Q 036466 192 TRSNKVALI---MATMRGTTGYNLQELPYKDCLSLFMKCA 228 (727)
Q Consensus 192 sr~~~~~~~---~~~~~~~~~~~l~~l~~~~~~~l~~~~~ 228 (727)
|........ .........+.+++.+.++..++++...
T Consensus 306 t~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~ 345 (854)
T 1qvr_A 306 TTLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGLK 345 (854)
T ss_dssp ECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHH
T ss_pred cCchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhh
Confidence 554433221 1122234569999999999999997543
No 203
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.17 E-value=7.5e-06 Score=82.92 Aligned_cols=157 Identities=16% Similarity=0.182 Sum_probs=85.7
Q ss_pred CceeecchhHHHHHHHHhcCC--CC------CCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCC-
Q 036466 49 SDIIGRYEDGEKIIELLTQTS--DG------ESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSG- 119 (727)
Q Consensus 49 ~~~vGr~~~~~~l~~~l~~~~--~~------~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~- 119 (727)
..++|+++.++.+..++.... .+ .+.....+.++|++|+|||++|+.++.. ... ..+.+++.....
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--l~~---~~~~i~~~~~~~~ 89 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL--ANA---PFIKVEATKFTEV 89 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHH--HTC---CEEEEEGGGGSSC
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHH--hCC---CEEEEcchhcccC
Confidence 458999999999988875410 00 0012457899999999999999999873 221 233455443211
Q ss_pred ------HHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCChhh------------HHHHHHhhcC
Q 036466 120 ------KRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDPRA------------WGELKSLLLG 181 (727)
Q Consensus 120 ------~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~------------~~~~~~~l~~ 181 (727)
....+.++.....+ .+... +.+.+|+||+++...... ...+...+..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~-------------~~~~~--~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~ 154 (310)
T 1ofh_A 90 GYVGKEVDSIIRDLTDSAGG-------------AIDAV--EQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEG 154 (310)
T ss_dssp CSGGGSTTHHHHHHHHTTTT-------------CHHHH--HHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHC
T ss_pred CccCccHHHHHHHHHHHhhH-------------HHhhc--cCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcC
Confidence 11222222221100 01110 236799999997654222 3344444433
Q ss_pred C----------CCCCEEEEec----Cch-HHHHHHhhcCCCCceecCCCChhhHHHHHHH
Q 036466 182 G----------AEGSKILVTT----RSN-KVALIMATMRGTTGYNLQELPYKDCLSLFMK 226 (727)
Q Consensus 182 ~----------~~~~~iliTs----r~~-~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~ 226 (727)
. ..+..+|.|+ ... .+...+.. +....+.+++++.++..+++.+
T Consensus 155 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~-R~~~~i~~~~~~~~~~~~il~~ 213 (310)
T 1ofh_A 155 STVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQG-RLPIRVELTALSAADFERILTE 213 (310)
T ss_dssp CEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHH-TCCEEEECCCCCHHHHHHHHHS
T ss_pred CeEecccccccCCcEEEEEcCCcccCCcccCCHHHHh-hCCceEEcCCcCHHHHHHHHHh
Confidence 1 1245566553 121 11111111 1224699999999999999874
No 204
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.16 E-value=2.3e-05 Score=76.80 Aligned_cols=191 Identities=15% Similarity=0.126 Sum_probs=99.3
Q ss_pred CCCceeecchhHHHHHHHHhc---CCC---CCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCH
Q 036466 47 RPSDIIGRYEDGEKIIELLTQ---TSD---GESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGK 120 (727)
Q Consensus 47 ~~~~~vGr~~~~~~l~~~l~~---~~~---~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~ 120 (727)
.-.+++|.+...+++.+.+.. +.. ......+-++|+|++|+||||+|+.++.. .... .++++.....
T Consensus 10 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--~~~~---~~~i~~~~~~-- 82 (257)
T 1lv7_A 10 TFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVP---FFTISGSDFV-- 82 (257)
T ss_dssp CGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH--HTCC---EEEECSCSST--
T ss_pred CHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCC---EEEEeHHHHH--
Confidence 345689999888877765432 100 00122456899999999999999999873 2222 2333322110
Q ss_pred HHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCCh--------------hhHHHHHHhhcC--CCC
Q 036466 121 RQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDP--------------RAWGELKSLLLG--GAE 184 (727)
Q Consensus 121 ~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~--------------~~~~~~~~~l~~--~~~ 184 (727)
..........+...+.......+.++++|+++.... .....+...+.. ...
T Consensus 83 -------------~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 149 (257)
T 1lv7_A 83 -------------EMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNE 149 (257)
T ss_dssp -------------TSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSS
T ss_pred -------------HHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCC
Confidence 001122233333444444455678999999843110 112223333322 123
Q ss_pred CCEEEEecCchH-HHHHHhh-cCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCC-chHHHHHHH
Q 036466 185 GSKILVTTRSNK-VALIMAT-MRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRG-IPLAVRTVG 261 (727)
Q Consensus 185 ~~~iliTsr~~~-~~~~~~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal~~~a 261 (727)
+..||.||.... +...... ......+.+...+.++..+++............ .....++..+.| ++--+..++
T Consensus 150 ~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~----~~~~~la~~~~G~~~~dl~~l~ 225 (257)
T 1lv7_A 150 GIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPD----IDAAIIARGTPGFSGADLANLV 225 (257)
T ss_dssp CEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTT----CCHHHHHHTCTTCCHHHHHHHH
T ss_pred CEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCcc----ccHHHHHHHcCCCCHHHHHHHH
Confidence 455666665542 1111111 112356778888888888888776532211111 113456677777 665555443
No 205
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.14 E-value=7.5e-06 Score=87.57 Aligned_cols=149 Identities=19% Similarity=0.226 Sum_probs=81.2
Q ss_pred CCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcC------C-ceEEEEecCCCCH
Q 036466 48 PSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHF------E-LKIWICVSEDSGK 120 (727)
Q Consensus 48 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f------~-~~~~~~~~~~~~~ 120 (727)
-..++||+++++.+...+... ....++|+|++|+|||++|+.++.. ....+ + .++.++++
T Consensus 179 ld~iiGr~~~i~~l~~~l~r~------~~~~~LL~G~pG~GKT~la~~la~~--l~~~~~p~~l~~~~~~~l~~~----- 245 (468)
T 3pxg_A 179 LDPVIGRSKEIQRVIEVLSRR------TKNNPVLIGEPGVGKTAIAEGLAQQ--IINNEVPEILRDKRVMTLDMG----- 245 (468)
T ss_dssp SCCCCCCHHHHHHHHHHHHCS------SSCEEEEESCTTTTTHHHHHHHHHH--HHSSCSCTTTSSCCEECC--------
T ss_pred CCCccCcHHHHHHHHHHHhcc------CCCCeEEECCCCCCHHHHHHHHHHH--HHhCCCChhhcCCeEEEeeCC-----
Confidence 356999999999999999762 2335789999999999999999884 22111 1 12223332
Q ss_pred HHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEEecCchHHHHH
Q 036466 121 RQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNKVALI 200 (727)
Q Consensus 121 ~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~iliTsr~~~~~~~ 200 (727)
....+. .... +...+...-..++.++++|.- .+ ....+...+. ....++|.+|........
T Consensus 246 --------~~~~g~--~e~~---~~~~~~~~~~~~~~iLfiD~~--~~--a~~~L~~~L~--~g~v~vI~at~~~e~~~~ 306 (468)
T 3pxg_A 246 --------TKYRGE--FEDR---LKKVMDEIRQAGNIILFIDAA--ID--ASNILKPSLA--RGELQCIGATTLDEYRKY 306 (468)
T ss_dssp -----------------CTT---HHHHHHHHHTCCCCEEEECC------------CCCTT--SSSCEEEEECCTTTTHHH
T ss_pred --------ccccch--HHHH---HHHHHHHHHhcCCeEEEEeCc--hh--HHHHHHHhhc--CCCEEEEecCCHHHHHHH
Confidence 000000 1111 222333333456789999921 11 1111211111 224566666654432111
Q ss_pred Hh----hcCCCCceecCCCChhhHHHHHHHhh
Q 036466 201 MA----TMRGTTGYNLQELPYKDCLSLFMKCA 228 (727)
Q Consensus 201 ~~----~~~~~~~~~l~~l~~~~~~~l~~~~~ 228 (727)
.. .......+.+...+.++..+++....
T Consensus 307 ~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 307 IEKDAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp HTTCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred hhcCHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 10 11123679999999999999998765
No 206
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.14 E-value=8.9e-07 Score=79.60 Aligned_cols=90 Identities=12% Similarity=0.192 Sum_probs=62.0
Q ss_pred CCceeeEEEecCCCCCCCcchhhhcCCCCcccEEEecCCCCcccc-CccCcc----ccccccccccccccccc-cCccCC
Q 036466 605 VGSHLRTLYVARLTPLLELPQWLLQGSSKTLQTLAIGDCPNFMAL-PGSLKD----LEALENLVIGICPKLSS-LPEGMH 678 (727)
Q Consensus 605 ~~~~L~~L~L~~~~~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~-~~~l~~----l~~L~~L~l~~~~~~~~-l~~~l~ 678 (727)
...+|++|||++|. .++.....+ ..+++|++|+|++|..+++- ...+.. .++|++|+|++|..+++ --..+.
T Consensus 59 ~~~~L~~LDLs~~~-Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~ 136 (176)
T 3e4g_A 59 DKYKIQAIDATDSC-IMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH 136 (176)
T ss_dssp TCCCEEEEEEESCC-CCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG
T ss_pred CCceEeEEeCcCCC-ccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh
Confidence 34578888888886 333322222 57899999999999765532 122333 35799999999986654 123466
Q ss_pred CCCccCeeeccCCcchhh
Q 036466 679 HLTTLKTLAIEECPALCE 696 (727)
Q Consensus 679 ~l~~L~~L~l~~c~~l~~ 696 (727)
.+++|+.|+|++||.++.
T Consensus 137 ~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 137 HFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp GCTTCCEEEEESCTTCCC
T ss_pred cCCCCCEEECCCCCCCCc
Confidence 789999999999998754
No 207
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.13 E-value=4.3e-05 Score=77.90 Aligned_cols=183 Identities=18% Similarity=0.194 Sum_probs=101.2
Q ss_pred CCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHH
Q 036466 47 RPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTK 126 (727)
Q Consensus 47 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 126 (727)
.-..++|.+..++.+...+..... ++..+..++|+|++|+||||||+.++.. ....| ....+....
T Consensus 23 ~l~~~~g~~~~~~~l~~~i~~~~~-~~~~~~~~ll~Gp~G~GKTTLa~~ia~~--l~~~~----~~~sg~~~~------- 88 (334)
T 1in4_A 23 SLDEFIGQENVKKKLSLALEAAKM-RGEVLDHVLLAGPPGLGKTTLAHIIASE--LQTNI----HVTSGPVLV------- 88 (334)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHH-HTCCCCCEEEESSTTSSHHHHHHHHHHH--HTCCE----EEEETTTCC-------
T ss_pred cHHHccCcHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCE----EEEechHhc-------
Confidence 345688999888888877754200 0123457999999999999999999873 22111 111111100
Q ss_pred HHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCChhhHHHHHHhhcCCC------------------CCCEE
Q 036466 127 IINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLGGA------------------EGSKI 188 (727)
Q Consensus 127 ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~------------------~~~~i 188 (727)
....+...+ ..+ .++.++++|+++.......+.+...+.... +...+
T Consensus 89 -------------~~~~l~~~~-~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~l 153 (334)
T 1in4_A 89 -------------KQGDMAAIL-TSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTL 153 (334)
T ss_dssp -------------SHHHHHHHH-HHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEE
T ss_pred -------------CHHHHHHHH-HHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEE
Confidence 011111111 112 234577889887665433333333222110 11222
Q ss_pred E-EecCchHHHHHHhhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchHHHHHHHh
Q 036466 189 L-VTTRSNKVALIMATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVRTVGS 262 (727)
Q Consensus 189 l-iTsr~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~ 262 (727)
+ .|++...+...... .......+++.+.++..+++.+.+...+. ....+.+..|++.++|.|-.+.-+..
T Consensus 154 i~at~~~~~Ls~~l~s-R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~---~~~~~~~~~ia~~~~G~~R~a~~ll~ 224 (334)
T 1in4_A 154 VGATTRSGLLSSPLRS-RFGIILELDFYTVKELKEIIKRAASLMDV---EIEDAAAEMIAKRSRGTPRIAIRLTK 224 (334)
T ss_dssp EEEESCGGGSCHHHHT-TCSEEEECCCCCHHHHHHHHHHHHHHTTC---CBCHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred EEecCCcccCCHHHHH-hcCceeeCCCCCHHHHHHHHHHHHHHcCC---CcCHHHHHHHHHhcCCChHHHHHHHH
Confidence 2 34444333222221 12235789999999999999887643322 23346788999999999976654443
No 208
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.13 E-value=4.9e-06 Score=82.08 Aligned_cols=132 Identities=14% Similarity=0.169 Sum_probs=71.3
Q ss_pred CceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHH
Q 036466 49 SDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKII 128 (727)
Q Consensus 49 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll 128 (727)
..++|++..+..+.+.+..... ....+.|+|++|+|||++|+.++... ...-...++++++... .+.+..
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~----~~~~vll~G~~GtGKt~la~~i~~~~--~~~~~~~~~v~~~~~~--~~~~~~-- 75 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAP----LDKPVLIIGERGTGKELIASRLHYLS--SRWQGPFISLNCAALN--ENLLDS-- 75 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTT----SCSCEEEECCTTSCHHHHHHHHHHTS--TTTTSCEEEEEGGGSC--HHHHHH--
T ss_pred ccceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHhc--CccCCCeEEEecCCCC--hhHHHH--
Confidence 4589999999998877765331 23468899999999999999998732 1111224566666532 222222
Q ss_pred HHhcCCCCCCCC--hHHHHHHHHHHhCCceEEEEEcCCCCCChhhHHHHHHhhcCC-----------CCCCEEEEecCc
Q 036466 129 NSVTGGNHGNLD--PDRLQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLGG-----------AEGSKILVTTRS 194 (727)
Q Consensus 129 ~~l~~~~~~~~~--~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~-----------~~~~~iliTsr~ 194 (727)
.+.+....... .......+.. ...-+|+||+++.........+...+... ....++|.||..
T Consensus 76 -~l~g~~~~~~~g~~~~~~~~l~~---a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~ 150 (265)
T 2bjv_A 76 -ELFGHEAGAFTGAQKRHPGRFER---ADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNA 150 (265)
T ss_dssp -HHHCCC---------CCCCHHHH---TTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESS
T ss_pred -HhcCCcccccccccccccchhhh---cCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCc
Confidence 22111100000 0000001111 13458999999888765555565555421 135678888765
No 209
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.13 E-value=1.4e-05 Score=73.59 Aligned_cols=121 Identities=15% Similarity=0.146 Sum_probs=65.2
Q ss_pred cchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhcC
Q 036466 54 RYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVTG 133 (727)
Q Consensus 54 r~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~ 133 (727)
.+..++.+.+++..... ...+.++|+|++|+|||||++.++........+ .++|++ ..++...+......
T Consensus 19 ~~~~~~~~~~~~~~~~~---~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~-~~~~~~------~~~~~~~~~~~~~~ 88 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNP---EEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI-RGYFFD------TKDLIFRLKHLMDE 88 (180)
T ss_dssp HHHHHHHHHHHHHSCCG---GGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC-CCCEEE------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccc---cCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC-eEEEEE------HHHHHHHHHHHhcC
Confidence 45566666666654321 234689999999999999999999843212222 234543 33444444433321
Q ss_pred CCCCCCChHHHHHHHHHHhCCceEEEEEcCCCC--CChhhHHHHHHhhcCC-CCCCEEEEecCc
Q 036466 134 GNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWN--EDPRAWGELKSLLLGG-AEGSKILVTTRS 194 (727)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~--~~~~~~~~~~~~l~~~-~~~~~iliTsr~ 194 (727)
.... ...+.+ .++-+|||||++. .+......+...+... ..+..+|+||..
T Consensus 89 ~~~~-----~~~~~~-----~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 89 GKDT-----KFLKTV-----LNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp TCCS-----HHHHHH-----HTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred chHH-----HHHHHh-----cCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 1111 222222 1456899999974 3322222333333221 246778888864
No 210
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.13 E-value=1.5e-05 Score=82.56 Aligned_cols=182 Identities=19% Similarity=0.151 Sum_probs=100.3
Q ss_pred CCceeecchhHHHHHHHHhcCC-------CCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCH
Q 036466 48 PSDIIGRYEDGEKIIELLTQTS-------DGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGK 120 (727)
Q Consensus 48 ~~~~vGr~~~~~~l~~~l~~~~-------~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~ 120 (727)
-.++.|-++..++|.+.+.-+. ..+-..++-|.++|++|+|||.+|++++. +....| +.+..+.
T Consensus 208 ~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~--e~~~~f---i~vs~s~---- 278 (467)
T 4b4t_H 208 YSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVAN--RTDATF---IRVIGSE---- 278 (467)
T ss_dssp CSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHH--HHTCEE---EEEEGGG----
T ss_pred HHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCCCe---EEEEhHH----
Confidence 3568899999999887653210 00114578899999999999999999998 333332 2233221
Q ss_pred HHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCCh--------------hhHHHHHHhhcC--CCC
Q 036466 121 RQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDP--------------RAWGELKSLLLG--GAE 184 (727)
Q Consensus 121 ~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~--------------~~~~~~~~~l~~--~~~ 184 (727)
+ ...+.+.....+...+..+-...+++|+||+++..-. .....+...+.. ...
T Consensus 279 ----------L-~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 347 (467)
T 4b4t_H 279 ----------L-VQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRG 347 (467)
T ss_dssp ----------G-CCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTT
T ss_pred ----------h-hcccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCC
Confidence 1 1111111222222333333345799999999975310 012223333332 233
Q ss_pred CCEEEEecCch-HHHHHHh-hcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCc
Q 036466 185 GSKILVTTRSN-KVALIMA-TMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGI 253 (727)
Q Consensus 185 ~~~iliTsr~~-~~~~~~~-~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 253 (727)
+..||.||... .+...+. .-+.+..+.+..-+.++..++|+............. ...|++.+.|.
T Consensus 348 ~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvd----l~~LA~~T~Gf 414 (467)
T 4b4t_H 348 NIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIR----WELISRLCPNS 414 (467)
T ss_dssp TEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHHCCSC
T ss_pred cEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCC----HHHHHHHCCCC
Confidence 45556666433 2222222 123346789988899999999987663322221111 35677777664
No 211
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.08 E-value=2.3e-05 Score=81.52 Aligned_cols=182 Identities=18% Similarity=0.131 Sum_probs=99.7
Q ss_pred CCceeecchhHHHHHHHHhcCCC-------CCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCH
Q 036466 48 PSDIIGRYEDGEKIIELLTQTSD-------GESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGK 120 (727)
Q Consensus 48 ~~~~vGr~~~~~~l~~~l~~~~~-------~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~ 120 (727)
-.++.|-++..++|.+.+.-+.. .+-..++-|.++|++|+|||.+|++++.. ....| +.++.+..
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e--~~~~~---~~v~~s~l--- 251 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT--IGANF---IFSPASGI--- 251 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGT---
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEehhhh---
Confidence 35678899999888877643210 01135688999999999999999999983 33222 23333211
Q ss_pred HHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCC----------h----hhHHHHHHhhcC--CCC
Q 036466 121 RQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNED----------P----RAWGELKSLLLG--GAE 184 (727)
Q Consensus 121 ~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~----------~----~~~~~~~~~l~~--~~~ 184 (727)
...+.+.....+...+..+-...+++|+||+++..- . .....+...+.. ...
T Consensus 252 ------------~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 319 (437)
T 4b4t_L 252 ------------VDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLG 319 (437)
T ss_dssp ------------CCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTT
T ss_pred ------------ccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCC
Confidence 011111111222222333334579999999997521 0 112233444432 234
Q ss_pred CCEEEEecCchH-HHHHHhh-cCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCc
Q 036466 185 GSKILVTTRSNK-VALIMAT-MRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGI 253 (727)
Q Consensus 185 ~~~iliTsr~~~-~~~~~~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 253 (727)
+..||.||.... +...+.. -..+..+.++.-+.++..++|+............+ ...+++.+.|.
T Consensus 320 ~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~d----l~~lA~~t~G~ 386 (437)
T 4b4t_L 320 QTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFD----FEAAVKMSDGF 386 (437)
T ss_dssp SSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCC----HHHHHHTCCSC
T ss_pred CeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhCCCC
Confidence 566777775432 2211111 11235688888888888888877653322221111 35677777664
No 212
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.08 E-value=1.2e-05 Score=86.01 Aligned_cols=189 Identities=15% Similarity=0.133 Sum_probs=104.9
Q ss_pred CceeecchhHHHHHHHHhcCCC-------CCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHH
Q 036466 49 SDIIGRYEDGEKIIELLTQTSD-------GESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKR 121 (727)
Q Consensus 49 ~~~vGr~~~~~~l~~~l~~~~~-------~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 121 (727)
..++|.+..+++|.+++..+.. ......+.+.|+|++|+|||++|+.++.. .... .+++++..
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~--~~~~---fv~vn~~~----- 273 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAF---FFLINGPE----- 273 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH--CSSE---EEEEEHHH-----
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH--hCCC---EEEEEchH-----
Confidence 4689999999999988754200 00033567999999999999999999863 2222 23344311
Q ss_pred HHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCC-----------hhhHHHHHHhhcC--CCCCCEE
Q 036466 122 QIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNED-----------PRAWGELKSLLLG--GAEGSKI 188 (727)
Q Consensus 122 ~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~-----------~~~~~~~~~~l~~--~~~~~~i 188 (727)
+.. .............+.....+++.+|+||+++... ......+...+.. ...+..|
T Consensus 274 -----l~~-----~~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~v 343 (489)
T 3hu3_A 274 -----IMS-----KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (489)
T ss_dssp -----HHT-----SCTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEE
T ss_pred -----hhh-----hhcchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEE
Confidence 111 1111112223344444455678999999994321 1122334444432 2334566
Q ss_pred EEecCchH-HHHHHhh-cCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCc-hHHHHHHH
Q 036466 189 LVTTRSNK-VALIMAT-MRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGI-PLAVRTVG 261 (727)
Q Consensus 189 liTsr~~~-~~~~~~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~a 261 (727)
|.||.... +...... ......+.+...+.++..++++............ ...++++.+.|. +-.+..++
T Consensus 344 IaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~----~l~~la~~t~g~s~~dL~~L~ 415 (489)
T 3hu3_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDV----DLEQVANETHGHVGADLAALC 415 (489)
T ss_dssp EEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTC----CHHHHHHTCTTCCHHHHHHHH
T ss_pred EEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchh----hHHHHHHHccCCcHHHHHHHH
Confidence 66665542 1111111 1223468999999999999998876432222111 235566667664 55555444
No 213
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.06 E-value=0.00012 Score=76.64 Aligned_cols=86 Identities=15% Similarity=0.278 Sum_probs=57.7
Q ss_pred CCCCCCceeeEEEecCCCCCCCcchhhhcCCCCcccEEEecCCCCcccc-CccCccccccccccccccccccccC-ccCC
Q 036466 601 DRKNVGSHLRTLYVARLTPLLELPQWLLQGSSKTLQTLAIGDCPNFMAL-PGSLKDLEALENLVIGICPKLSSLP-EGMH 678 (727)
Q Consensus 601 ~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~l~-~~l~ 678 (727)
..+..|++|+.+.+.. .+..++.... ..|.+|+++.|..+ +..+ ...|.++.+|+.+.|..+ ++.+. .++.
T Consensus 282 ~aF~~c~~L~~i~l~~--~i~~I~~~aF-~~c~~L~~i~lp~~--v~~I~~~aF~~C~~L~~i~ip~s--v~~I~~~aF~ 354 (394)
T 4gt6_A 282 GAFMNCPALQDIEFSS--RITELPESVF-AGCISLKSIDIPEG--ITQILDDAFAGCEQLERIAIPSS--VTKIPESAFS 354 (394)
T ss_dssp TTTTTCTTCCEEECCT--TCCEECTTTT-TTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEECTT--CCBCCGGGGT
T ss_pred cccccccccccccCCC--cccccCceee-cCCCCcCEEEeCCc--ccEehHhHhhCCCCCCEEEECcc--cCEEhHhHhh
Confidence 3455677788877753 3444444332 46788999988654 3333 456788889999988654 44443 4678
Q ss_pred CCCccCeeeccCCcc
Q 036466 679 HLTTLKTLAIEECPA 693 (727)
Q Consensus 679 ~l~~L~~L~l~~c~~ 693 (727)
+|++|+.+++.++..
T Consensus 355 ~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 355 NCTALNNIEYSGSRS 369 (394)
T ss_dssp TCTTCCEEEESSCHH
T ss_pred CCCCCCEEEECCcee
Confidence 899999999988654
No 214
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.99 E-value=2.4e-06 Score=79.00 Aligned_cols=89 Identities=16% Similarity=0.183 Sum_probs=50.4
Q ss_pred hhhhhhhcCCCcceEEEecCC-Cccc-----cccccCCCCcCcEEeccCCccccc----cCccccCCCCCCEeecCCCCC
Q 036466 420 SFVTSCISKSKSLRVLVLTNS-AIEV-----LPRKMGNLKQLRHLDLSGNRKIKK----LPNSICELQSLQTLNLGDCLE 489 (727)
Q Consensus 420 ~~~~~~~~~~~~L~~L~l~~~-~~~~-----l~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~ 489 (727)
..+...+..+++|+.|++++| .+.. +...+...++|++|++++|.+... +...+...+.|++|+|++|.+
T Consensus 26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i 105 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI 105 (185)
T ss_dssp HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC
Confidence 345566777888888888888 7652 334455566777777777764321 223334445666666666554
Q ss_pred Ccc----cChhhcccccCceeEe
Q 036466 490 LEE----LPKDIRYLVSLRMFVV 508 (727)
Q Consensus 490 ~~~----~~~~l~~l~~L~~L~l 508 (727)
... +...+....+|++|++
T Consensus 106 ~~~g~~~l~~~L~~n~~L~~L~L 128 (185)
T 1io0_A 106 SGSGILALVEALQSNTSLIELRI 128 (185)
T ss_dssp CHHHHHHHHHGGGGCSSCCEEEC
T ss_pred CHHHHHHHHHHHHhCCCceEEEe
Confidence 432 2333334444444444
No 215
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.98 E-value=9.6e-06 Score=76.29 Aligned_cols=127 Identities=16% Similarity=0.212 Sum_probs=65.7
Q ss_pred Cceeecc----hhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHH
Q 036466 49 SDIIGRY----EDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIM 124 (727)
Q Consensus 49 ~~~vGr~----~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 124 (727)
..|++.. ..++.+.+++...... ...+.+.|+|++|+|||+||+.++.. .......++|+++. ++.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~G~~GtGKT~la~~i~~~--~~~~~~~~~~~~~~------~~~ 94 (202)
T 2w58_A 25 SDVDLNDDGRIKAIRFAERFVAEYEPG--KKMKGLYLHGSFGVGKTYLLAAIANE--LAKRNVSSLIVYVP------ELF 94 (202)
T ss_dssp TSSCCSSHHHHHHHHHHHHHHHHCCSS--CCCCEEEEECSTTSSHHHHHHHHHHH--HHTTTCCEEEEEHH------HHH
T ss_pred hhccCCChhHHHHHHHHHHHHHHhhhc--cCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEhH------HHH
Confidence 3466543 3555666666553211 12268999999999999999999983 33333445666543 333
Q ss_pred HHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCChhhH--HHHHH-hhcCC-CCCCEEEEecCch
Q 036466 125 TKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDPRAW--GELKS-LLLGG-AEGSKILVTTRSN 195 (727)
Q Consensus 125 ~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~--~~~~~-~l~~~-~~~~~iliTsr~~ 195 (727)
..+..... ..........+.+ .-+|||||++......| ..+.. .+... ..+.++|+||...
T Consensus 95 ~~~~~~~~-----~~~~~~~~~~~~~-----~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~ 159 (202)
T 2w58_A 95 RELKHSLQ-----DQTMNEKLDYIKK-----VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFD 159 (202)
T ss_dssp HHHHHC--------CCCHHHHHHHHH-----SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSC
T ss_pred HHHHHHhc-----cchHHHHHHHhcC-----CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 33333221 1122333333322 23899999965432121 11221 12111 2345688888753
No 216
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.97 E-value=3.7e-05 Score=79.90 Aligned_cols=181 Identities=18% Similarity=0.166 Sum_probs=93.9
Q ss_pred CceeecchhHHHHHHHHhcCCC-------CCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHH
Q 036466 49 SDIIGRYEDGEKIIELLTQTSD-------GESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKR 121 (727)
Q Consensus 49 ~~~vGr~~~~~~l~~~l~~~~~-------~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 121 (727)
.++.|-++..+.|.+.+..+.. .+-..++-+.++|++|+|||++|++++.. ...+| +.++.+..
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~--~~~~~---~~v~~~~l---- 242 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANS--TKAAF---IRVNGSEF---- 242 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHH--HTCEE---EEEEGGGT----
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHH--hCCCe---EEEecchh----
Confidence 5678999999988887642210 01135678999999999999999999983 33222 23332211
Q ss_pred HHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCC-----------Ch---hhHHHHHHhhcC--CCCC
Q 036466 122 QIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNE-----------DP---RAWGELKSLLLG--GAEG 185 (727)
Q Consensus 122 ~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~-----------~~---~~~~~~~~~l~~--~~~~ 185 (727)
...+.+.....+.+.+..+-...++++++|+++.. +. .....+...+.. ...+
T Consensus 243 -----------~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~ 311 (428)
T 4b4t_K 243 -----------VHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTN 311 (428)
T ss_dssp -----------CCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCS
T ss_pred -----------hccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCC
Confidence 01111112222223333333457899999999431 10 112233333332 2345
Q ss_pred CEEEEecCch-HHHHHHhhc-CCCCceecCCCCh-hhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCc
Q 036466 186 SKILVTTRSN-KVALIMATM-RGTTGYNLQELPY-KDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGI 253 (727)
Q Consensus 186 ~~iliTsr~~-~~~~~~~~~-~~~~~~~l~~l~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 253 (727)
..||.||... .+...+... +.+..+.++++++ ++..++|+............+ ...+++.+.|.
T Consensus 312 v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~d----l~~lA~~t~G~ 378 (428)
T 4b4t_K 312 VKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEAD----LDSLIIRNDSL 378 (428)
T ss_dssp EEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCC----HHHHHHHTTTC
T ss_pred EEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHHCCCC
Confidence 5666666543 222222221 2235678876655 445556655443222111111 35666777663
No 217
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.97 E-value=6.8e-05 Score=79.36 Aligned_cols=183 Identities=15% Similarity=0.107 Sum_probs=99.6
Q ss_pred CCceeecchhHHHHHHHHhcCCC------CCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHH
Q 036466 48 PSDIIGRYEDGEKIIELLTQTSD------GESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKR 121 (727)
Q Consensus 48 ~~~~vGr~~~~~~l~~~l~~~~~------~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 121 (727)
-.+++|.++.++++.+.+..... -....++-++|+|++|+|||+||+.++.. .... .++++++.....
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~--~~~~---f~~is~~~~~~~- 88 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE--ANVP---FFHISGSDFVEL- 88 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHH--HTCC---EEEEEGGGTTTC-
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--cCCC---eeeCCHHHHHHH-
Confidence 35689999888877766532110 00122456899999999999999999873 2222 223333221100
Q ss_pred HHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCCh--------------hhHHHHHHhhcC--CCCC
Q 036466 122 QIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDP--------------RAWGELKSLLLG--GAEG 185 (727)
Q Consensus 122 ~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~--------------~~~~~~~~~l~~--~~~~ 185 (727)
............+.......+.+|+||+++.... .....+...+.. ...+
T Consensus 89 --------------~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~ 154 (476)
T 2ce7_A 89 --------------FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEG 154 (476)
T ss_dssp --------------CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGT
T ss_pred --------------HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCC
Confidence 0111112233344445556789999999965321 112233333321 1235
Q ss_pred CEEEEecCchHHHH-HH-hhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCch
Q 036466 186 SKILVTTRSNKVAL-IM-ATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIP 254 (727)
Q Consensus 186 ~~iliTsr~~~~~~-~~-~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 254 (727)
..||.||....... .. ........+.+...+.++..+++............. ....+++.+.|+.
T Consensus 155 viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v----~l~~la~~t~G~s 221 (476)
T 2ce7_A 155 IIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDV----NLEIIAKRTPGFV 221 (476)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC----CHHHHHHTCTTCC
T ss_pred EEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchh----hHHHHHHhcCCCc
Confidence 66777776553221 11 111223478888888888888887665332211111 1355778888876
No 218
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.96 E-value=9.9e-06 Score=84.23 Aligned_cols=183 Identities=15% Similarity=0.104 Sum_probs=97.3
Q ss_pred CCCceeecchhHHHHHHHHhcCC-------CCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCC
Q 036466 47 RPSDIIGRYEDGEKIIELLTQTS-------DGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSG 119 (727)
Q Consensus 47 ~~~~~vGr~~~~~~l~~~l~~~~-------~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~ 119 (727)
.-.++.|-++..++|.+.+..+. ..+-..++-|.+||+||+|||.+|++++.. ....| +.++.+.
T Consensus 179 t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e--~~~~f---~~v~~s~--- 250 (434)
T 4b4t_M 179 TYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQ--TNATF---LKLAAPQ--- 250 (434)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCEE---EEEEGGG---
T ss_pred ChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHH--hCCCE---EEEehhh---
Confidence 34668899999999887643210 011134678999999999999999999983 33222 2232211
Q ss_pred HHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCC-----Ch---------hhHHHHHHhhcCC--C
Q 036466 120 KRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNE-----DP---------RAWGELKSLLLGG--A 183 (727)
Q Consensus 120 ~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~-----~~---------~~~~~~~~~l~~~--~ 183 (727)
+ ...+.+.....+...+..+-...+++|+||+++.. +. .....+...+... .
T Consensus 251 -----------l-~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~ 318 (434)
T 4b4t_M 251 -----------L-VQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSD 318 (434)
T ss_dssp -----------G-CSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSS
T ss_pred -----------h-hhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCC
Confidence 1 01111111111112222222346899999998531 00 0122233334332 3
Q ss_pred CCCEEEEecCchH-HHHHHh-hcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCc
Q 036466 184 EGSKILVTTRSNK-VALIMA-TMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGI 253 (727)
Q Consensus 184 ~~~~iliTsr~~~-~~~~~~-~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 253 (727)
.+..||.||.... +...+. .-+.+..+.++.-+.++..++|+............. ...+++.+.|.
T Consensus 319 ~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvd----l~~lA~~t~G~ 386 (434)
T 4b4t_M 319 DRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDIN----WQELARSTDEF 386 (434)
T ss_dssp CSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCC----HHHHHHHCSSC
T ss_pred CCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCC
Confidence 3555666665432 221111 112235788888888888888876653322221111 35677777663
No 219
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.96 E-value=5e-05 Score=86.97 Aligned_cols=161 Identities=17% Similarity=0.206 Sum_probs=89.0
Q ss_pred CCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHh----cCCceEE-EEecCCCCHHH
Q 036466 48 PSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEE----HFELKIW-ICVSEDSGKRQ 122 (727)
Q Consensus 48 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~----~f~~~~~-~~~~~~~~~~~ 122 (727)
...++||+.+++.+.+.+... ....++|+|++|+|||++|+.++....... .....+| ++....
T Consensus 185 ~d~~iGr~~~i~~l~~~l~~~------~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l----- 253 (758)
T 1r6b_X 185 IDPLIGREKELERAIQVLCRR------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL----- 253 (758)
T ss_dssp SCCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC-------
T ss_pred CCCccCCHHHHHHHHHHHhcc------CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH-----
Confidence 356899999999999998763 344678999999999999999997421111 0122222 111110
Q ss_pred HHHHHHHHhcCCCCCCCChHHHHHHHHHHh-CCceEEEEEcCCCCCCh-----hhHHHHHHhhcC--CCCCCEEEEecCc
Q 036466 123 IMTKIINSVTGGNHGNLDPDRLQKVLRDSL-NGKRYLLVMDDVWNEDP-----RAWGELKSLLLG--GAEGSKILVTTRS 194 (727)
Q Consensus 123 ~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDd~~~~~~-----~~~~~~~~~l~~--~~~~~~iliTsr~ 194 (727)
..+... ....+.....+.+.+ ..++.+|+||+++.... ..-......+.. ...+..+|.+|..
T Consensus 254 --------~~~~~~-~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~~~~~I~at~~ 324 (758)
T 1r6b_X 254 --------LAGTKY-RGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTY 324 (758)
T ss_dssp ---------CCCCC-SSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEEEECH
T ss_pred --------hccccc-cchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhCCCeEEEEEeCc
Confidence 001111 112232223333333 34678999999976510 001122223322 1235566666654
Q ss_pred hHHHHHHh----hcCCCCceecCCCChhhHHHHHHHhh
Q 036466 195 NKVALIMA----TMRGTTGYNLQELPYKDCLSLFMKCA 228 (727)
Q Consensus 195 ~~~~~~~~----~~~~~~~~~l~~l~~~~~~~l~~~~~ 228 (727)
........ .......+.+...+.++..+++....
T Consensus 325 ~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 325 QEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred hHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 43321110 11123468899999999999887654
No 220
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.95 E-value=1.5e-05 Score=81.83 Aligned_cols=182 Identities=18% Similarity=0.131 Sum_probs=96.8
Q ss_pred CCceeecchhHHHHHHHHhcCC---C----CCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCH
Q 036466 48 PSDIIGRYEDGEKIIELLTQTS---D----GESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGK 120 (727)
Q Consensus 48 ~~~~vGr~~~~~~l~~~l~~~~---~----~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~ 120 (727)
-.++.|-++..++|.+.+.-+. + ..-..++-|.++|++|+|||.+|++++.. ....| +.++.+.
T Consensus 181 ~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e--~~~~f---i~v~~s~---- 251 (437)
T 4b4t_I 181 YSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ--TSATF---LRIVGSE---- 251 (437)
T ss_dssp GGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHH--HTCEE---EEEESGG----
T ss_pred ceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHH--hCCCE---EEEEHHH----
Confidence 3567789999888887764221 0 11134678999999999999999999983 33322 1222211
Q ss_pred HHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCC----------h----hhHHHHHHhhcC--CCC
Q 036466 121 RQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNED----------P----RAWGELKSLLLG--GAE 184 (727)
Q Consensus 121 ~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~----------~----~~~~~~~~~l~~--~~~ 184 (727)
+ ...+.+.....+...+..+-...+++|+||+++..- . .....+...+.. ...
T Consensus 252 ----------l-~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~ 320 (437)
T 4b4t_I 252 ----------L-IQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRG 320 (437)
T ss_dssp ----------G-CCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSS
T ss_pred ----------h-hhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCC
Confidence 1 011111111222222233334578999999996521 0 112223333322 233
Q ss_pred CCEEEEecCchH-HHHHHhh-cCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCc
Q 036466 185 GSKILVTTRSNK-VALIMAT-MRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGI 253 (727)
Q Consensus 185 ~~~iliTsr~~~-~~~~~~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 253 (727)
+..||.||.... +...+.. -+.+..+.+..-+.++..++|+............+ ...+++.+.|.
T Consensus 321 ~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvd----l~~LA~~T~Gf 387 (437)
T 4b4t_I 321 DVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVN----LETLVTTKDDL 387 (437)
T ss_dssp SEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCC----HHHHHHHCCSC
T ss_pred CEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCC
Confidence 555666665432 2222111 11235678888888888888887663322221111 35666777653
No 221
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.93 E-value=2.4e-06 Score=84.55 Aligned_cols=162 Identities=15% Similarity=0.131 Sum_probs=84.6
Q ss_pred CCCceeecchhHHHHHHHHhcCCC------CCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCH
Q 036466 47 RPSDIIGRYEDGEKIIELLTQTSD------GESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGK 120 (727)
Q Consensus 47 ~~~~~vGr~~~~~~l~~~l~~~~~------~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~ 120 (727)
....++|.++..+.+.+.+..... ......+.+.|+|++|+|||++|+.++.. ....|- .+.+....
T Consensus 9 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--~~~~~~---~v~~~~~~-- 81 (268)
T 2r62_A 9 RFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE--AHVPFF---SMGGSSFI-- 81 (268)
T ss_dssp CSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH--HTCCCC---CCCSCTTT--
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCEE---EechHHHH--
Confidence 345699999999888877642100 00012334889999999999999999873 322221 12221110
Q ss_pred HHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCChh---------------hHHHHHHhhcCC---
Q 036466 121 RQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDPR---------------AWGELKSLLLGG--- 182 (727)
Q Consensus 121 ~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~---------------~~~~~~~~l~~~--- 182 (727)
....+. ....... .+.......+.+|+||+++..... ....+...+...
T Consensus 82 --------~~~~~~--~~~~~~~---~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 148 (268)
T 2r62_A 82 --------EMFVGL--GASRVRD---LFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSE 148 (268)
T ss_dssp --------TSCSSS--CSSSSST---THHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCS
T ss_pred --------Hhhcch--HHHHHHH---HHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccC
Confidence 001000 0111111 222222346789999999654211 111222222211
Q ss_pred CCCCEEEEecCchHHHH-HHhh-cCCCCceecCCCChhhHHHHHHHhh
Q 036466 183 AEGSKILVTTRSNKVAL-IMAT-MRGTTGYNLQELPYKDCLSLFMKCA 228 (727)
Q Consensus 183 ~~~~~iliTsr~~~~~~-~~~~-~~~~~~~~l~~l~~~~~~~l~~~~~ 228 (727)
.....||.||....... .... ......+.++..+.++..+++....
T Consensus 149 ~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 149 NAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHI 196 (268)
T ss_dssp CSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHT
T ss_pred CCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHH
Confidence 12355677776543211 1111 1223568888899999999988765
No 222
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.92 E-value=0.00033 Score=74.72 Aligned_cols=99 Identities=12% Similarity=-0.005 Sum_probs=62.3
Q ss_pred EEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEEe---------cC----chHHHHHHhhcCCCCceecCCCChhhHHHH
Q 036466 157 YLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVT---------TR----SNKVALIMATMRGTTGYNLQELPYKDCLSL 223 (727)
Q Consensus 157 ~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~iliT---------sr----~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l 223 (727)
-++++|+++..+....+.+...+-......-|+.| +. ...+... .......+.+.+++.++..++
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~~~il~tn~~~~~i~~~~~~~~~~~l~~~--i~sR~~~~~~~~~~~~e~~~i 374 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAPIVIFASNRGNCVIRGTEDITSPHGIPLD--LLDRVMIIRTMLYTPQEMKQI 374 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCCEEEEEECCSEEECBTTSSCEEETTCCHH--HHTTEEEEECCCCCHHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCCEEEEecCCccccccccccccccccCChh--HHhhcceeeCCCCCHHHHHHH
Confidence 48999999998887788887777654434322244 32 1111111 112225689999999999999
Q ss_pred HHHhhccCCCCCChhHHHHHHHHHHHc-CCchHHHHHH
Q 036466 224 FMKCAFKVGQEKHPNLVKIGEKIVEKC-RGIPLAVRTV 260 (727)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~i~~~~-~g~Plal~~~ 260 (727)
+...+...+.. ...+.+..+++.+ +|.|.....+
T Consensus 375 L~~~~~~~~~~---~~~~~~~~i~~~a~~g~~r~a~~l 409 (456)
T 2c9o_A 375 IKIRAQTEGIN---ISEEALNHLGEIGTKTTLRYSVQL 409 (456)
T ss_dssp HHHHHHHHTCC---BCHHHHHHHHHHHHHSCHHHHHHT
T ss_pred HHHHHHHhCCC---CCHHHHHHHHHHccCCCHHHHHHH
Confidence 98876432222 2345667888888 7887655443
No 223
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.91 E-value=0.00021 Score=74.95 Aligned_cols=82 Identities=11% Similarity=0.129 Sum_probs=52.9
Q ss_pred CCCCCCceeeEEEecCCCCCCCcchhhhcCCCCcccEEEecCCCCcccc-CccCccccccccccccccccccccCccCCC
Q 036466 601 DRKNVGSHLRTLYVARLTPLLELPQWLLQGSSKTLQTLAIGDCPNFMAL-PGSLKDLEALENLVIGICPKLSSLPEGMHH 679 (727)
Q Consensus 601 ~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~ 679 (727)
..+.+|.+|+++.|..+ +..+..... ..|.+|+++.|..+ ...+ ...|.++++|+.+++.++...- ..+..
T Consensus 305 ~aF~~c~~L~~i~lp~~--v~~I~~~aF-~~C~~L~~i~ip~s--v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~ 376 (394)
T 4gt6_A 305 SVFAGCISLKSIDIPEG--ITQILDDAF-AGCEQLERIAIPSS--VTKIPESAFSNCTALNNIEYSGSRSQW---NAIST 376 (394)
T ss_dssp TTTTTCTTCCEEECCTT--CCEECTTTT-TTCTTCCEEEECTT--CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBC
T ss_pred eeecCCCCcCEEEeCCc--ccEehHhHh-hCCCCCCEEEECcc--cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhc
Confidence 45678899999999753 444543321 56899999999654 3444 4568899999999998864322 34567
Q ss_pred CCccCeeeccC
Q 036466 680 LTTLKTLAIEE 690 (727)
Q Consensus 680 l~~L~~L~l~~ 690 (727)
+.+|+.+.+..
T Consensus 377 ~~~L~~i~i~~ 387 (394)
T 4gt6_A 377 DSGLQNLPVAP 387 (394)
T ss_dssp CCCC-------
T ss_pred cCCCCEEEeCC
Confidence 78888887754
No 224
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.87 E-value=4e-06 Score=75.36 Aligned_cols=12 Identities=25% Similarity=0.337 Sum_probs=5.1
Q ss_pred CCcccEEEecCC
Q 036466 632 SKTLQTLAIGDC 643 (727)
Q Consensus 632 ~~~L~~L~L~~~ 643 (727)
+++|++|+|++|
T Consensus 138 ~~~L~~L~L~~c 149 (176)
T 3e4g_A 138 FRNLKYLFLSDL 149 (176)
T ss_dssp CTTCCEEEEESC
T ss_pred CCCCCEEECCCC
Confidence 344444444444
No 225
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.85 E-value=6.9e-05 Score=85.65 Aligned_cols=151 Identities=21% Similarity=0.240 Sum_probs=82.0
Q ss_pred CCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHh-c---CCce-EEEEecCCCCHHH
Q 036466 48 PSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEE-H---FELK-IWICVSEDSGKRQ 122 (727)
Q Consensus 48 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~-~---f~~~-~~~~~~~~~~~~~ 122 (727)
-..++||+++++.+...+... ....+.++|++|+|||++|+.++....... . .+.. +.+++
T Consensus 179 ld~iiG~~~~i~~l~~~l~~~------~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~-------- 244 (758)
T 3pxi_A 179 LDPVIGRSKEIQRVIEVLSRR------TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM-------- 244 (758)
T ss_dssp SCCCCCCHHHHHHHHHHHHCS------SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------
T ss_pred CCCccCchHHHHHHHHHHhCC------CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc--------
Confidence 356999999999999999762 234588999999999999999987421100 0 0111 11222
Q ss_pred HHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEEecCchHHHHHHh
Q 036466 123 IMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNKVALIMA 202 (727)
Q Consensus 123 ~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~iliTsr~~~~~~~~~ 202 (727)
+....+.-...+...+......++.+|++|.- .+ ....+...+. ....++|.+|..........
T Consensus 245 ----------g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD~~--~~--~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~ 308 (758)
T 3pxi_A 245 ----------GTKYRGEFEDRLKKVMDEIRQAGNIILFIDAA--ID--ASNILKPSLA--RGELQCIGATTLDEYRKYIE 308 (758)
T ss_dssp ------------------CTTHHHHHHHHHTCCCCEEEECC------------CCCTT--SSSCEEEEECCTTTTHHHHT
T ss_pred ----------cccccchHHHHHHHHHHHHHhcCCEEEEEcCc--hh--HHHHHHHHHh--cCCEEEEeCCChHHHHHHhh
Confidence 00001111112223333344467889999921 11 1111111111 23456666665544211110
Q ss_pred ----hcCCCCceecCCCChhhHHHHHHHhh
Q 036466 203 ----TMRGTTGYNLQELPYKDCLSLFMKCA 228 (727)
Q Consensus 203 ----~~~~~~~~~l~~l~~~~~~~l~~~~~ 228 (727)
.......+.++..+.++..+++....
T Consensus 309 ~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 309 KDAALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp TCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred ccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 11123679999999999999998654
No 226
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.81 E-value=1.4e-05 Score=73.87 Aligned_cols=113 Identities=12% Similarity=0.039 Sum_probs=67.5
Q ss_pred cccCCCCcCcEEeccCC-cccc----ccCccccCCCCCCEeecCCCCCCcc----cChhhcccccCceeEeccccccc--
Q 036466 447 RKMGNLKQLRHLDLSGN-RKIK----KLPNSICELQSLQTLNLGDCLELEE----LPKDIRYLVSLRMFVVTTKQKSL-- 515 (727)
Q Consensus 447 ~~~~~l~~L~~L~l~~~-~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~-- 515 (727)
..+...++|+.|++++| .+.. .+...+...++|++|+|++|.+... +...+...++|++|++++|.++.
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 34566778888888887 5432 2344455667788888887765432 34445555677777777777762
Q ss_pred ---ccccCCCCCCCcEEec--cccCCchh----hhhhccCCCCcCeeecccCc
Q 036466 516 ---LESGIGCLSSLRFLMI--SNCGNLEY----LFEDIDQLSVLRSLVVNACP 559 (727)
Q Consensus 516 ---~~~~~~~l~~L~~L~l--~~~~~~~~----l~~~l~~l~~L~~L~l~~~~ 559 (727)
+...+...++|++|++ ++|..... +...+...++|+.|++++|.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 3344555566666666 44433221 33444455666666666554
No 227
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.79 E-value=1.6e-05 Score=70.23 Aligned_cols=86 Identities=17% Similarity=0.073 Sum_probs=51.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCce
Q 036466 77 SVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKR 156 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 156 (727)
..++|+|++|+|||||++.++.... ..-..++|++....... .+..++
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~--~~g~~~~~~~~~~~~~~------------------------------~~~~~~ 84 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQAL--EAGKNAAYIDAASMPLT------------------------------DAAFEA 84 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHH--TTTCCEEEEETTTSCCC------------------------------GGGGGC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH--hcCCcEEEEcHHHhhHH------------------------------HHHhCC
Confidence 4799999999999999999998432 22112566655432111 112345
Q ss_pred EEEEEcCCCCCChhhHHHHHHhhcCC-CCCC-EEEEecCc
Q 036466 157 YLLVMDDVWNEDPRAWGELKSLLLGG-AEGS-KILVTTRS 194 (727)
Q Consensus 157 ~LlvlDd~~~~~~~~~~~~~~~l~~~-~~~~-~iliTsr~ 194 (727)
-++|+||++..+......+...+... ..|. .+|+||+.
T Consensus 85 ~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 85 EYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp SEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred CEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 68899999776543333333333221 1233 48888874
No 228
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.78 E-value=0.00036 Score=69.50 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=22.9
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHhcc
Q 036466 74 ETVSVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 74 ~~~~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
..++.+.++|++|+|||+||+.++..
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999983
No 229
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.77 E-value=5.3e-05 Score=84.94 Aligned_cols=183 Identities=14% Similarity=0.129 Sum_probs=100.9
Q ss_pred CCceeecchhHHHHHHHHhcC-------CCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCH
Q 036466 48 PSDIIGRYEDGEKIIELLTQT-------SDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGK 120 (727)
Q Consensus 48 ~~~~vGr~~~~~~l~~~l~~~-------~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~ 120 (727)
-.++.|-++.+++|.+.+.-+ ....-..++-|.++|++|+|||+||+.++.. ...+ .+++++.
T Consensus 203 ~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e--lg~~---~~~v~~~----- 272 (806)
T 3cf2_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAF---FFLINGP----- 272 (806)
T ss_dssp GGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT--TTCE---EEEEEHH-----
T ss_pred hhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCe---EEEEEhH-----
Confidence 356789999999988876321 1112245788999999999999999999983 3222 2233321
Q ss_pred HHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCCh-------hh----HHHHHHhhcC--CCCCCE
Q 036466 121 RQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDP-------RA----WGELKSLLLG--GAEGSK 187 (727)
Q Consensus 121 ~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~-------~~----~~~~~~~l~~--~~~~~~ 187 (727)
++. ..........+...+..+....+++|+||+++..-. .. ...+...+.. ...+..
T Consensus 273 ---------~l~-sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~ 342 (806)
T 3cf2_A 273 ---------EIM-SKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (806)
T ss_dssp ---------HHH-SSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEE
T ss_pred ---------Hhh-cccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEE
Confidence 110 111222222333444444556799999999965310 11 1122222221 122444
Q ss_pred EEEecCch-HHHHHHhh-cCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCch
Q 036466 188 ILVTTRSN-KVALIMAT-MRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIP 254 (727)
Q Consensus 188 iliTsr~~-~~~~~~~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 254 (727)
||.||... .+...+.. ......+++..-+.++-.++|+............ ....+++.+.|.-
T Consensus 343 VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dv----dl~~lA~~T~Gfs 407 (806)
T 3cf2_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDV----DLEQVANETHGHV 407 (806)
T ss_dssp EEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTC----CHHHHHHHCCSCC
T ss_pred EEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCccc----CHHHHHHhcCCCC
Confidence 55555443 22222221 1234578999889999999988765322111111 2456777777653
No 230
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.72 E-value=7.8e-05 Score=85.18 Aligned_cols=159 Identities=20% Similarity=0.233 Sum_probs=93.3
Q ss_pred CceeecchhHHHHHHHHhcCCCCC---CCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHH
Q 036466 49 SDIIGRYEDGEKIIELLTQTSDGE---SETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMT 125 (727)
Q Consensus 49 ~~~vGr~~~~~~l~~~l~~~~~~~---~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 125 (727)
..++|.+..++.+...+.....+. ..+...+.++|++|+|||++|+.++.. ..+.-...+.++++........
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~--l~~~~~~~i~i~~s~~~~~~~~-- 566 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES--IFGDEESMIRIDMSEYMEKHST-- 566 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHH--HHSCTTCEEEEEGGGGCSSCCC--
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCcceEEEechhccccccc--
Confidence 468999999999998886542211 122347999999999999999999973 3222234456666543211000
Q ss_pred HHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCChhhHHHHHHhhcCC-----------CCCCEEEEecCc
Q 036466 126 KIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLGG-----------AEGSKILVTTRS 194 (727)
Q Consensus 126 ~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~-----------~~~~~iliTsr~ 194 (727)
....+...+++ ....+|+||+++.........+...+... ....+||.||..
T Consensus 567 --------------~~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~ 629 (758)
T 3pxi_A 567 --------------SGGQLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNV 629 (758)
T ss_dssp --------------C---CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESS
T ss_pred --------------ccchhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCC
Confidence 01111122221 23458999999888876677776666431 235678888873
Q ss_pred h-----HHH----HHHh---hcCCCCceecCCCChhhHHHHHHHhh
Q 036466 195 N-----KVA----LIMA---TMRGTTGYNLQELPYKDCLSLFMKCA 228 (727)
Q Consensus 195 ~-----~~~----~~~~---~~~~~~~~~l~~l~~~~~~~l~~~~~ 228 (727)
. ... .... ..+-...+.+.+++.++..+++....
T Consensus 630 ~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 630 GASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp STTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 1 111 0010 11122578899999988888876643
No 231
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.59 E-value=0.004 Score=64.60 Aligned_cols=83 Identities=14% Similarity=0.176 Sum_probs=51.4
Q ss_pred CCCCCceeeEEEecCCCCCCCcchhhhcCCCCcccEEEecCCCCccccCccCccccccccccccccccccccC-ccCCCC
Q 036466 602 RKNVGSHLRTLYVARLTPLLELPQWLLQGSSKTLQTLAIGDCPNFMALPGSLKDLEALENLVIGICPKLSSLP-EGMHHL 680 (727)
Q Consensus 602 ~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~-~~l~~l 680 (727)
.+..|.+|+.+.+... +..++.... ..|++|+++.+.++.....-...|.++.+|+.+.|..+ ++.+. .++.+|
T Consensus 258 aF~~~~~l~~i~l~~~--i~~i~~~aF-~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C 332 (379)
T 4h09_A 258 LLQNCTALKTLNFYAK--VKTVPYLLC-SGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA--LKTIQVYAFKNC 332 (379)
T ss_dssp TTTTCTTCCEEEECCC--CSEECTTTT-TTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTC
T ss_pred ccceeehhcccccccc--ceecccccc-ccccccccccccccccceehhhhhcCCCCCCEEEcCcc--ccEEHHHHhhCC
Confidence 4456667777777543 333333221 46778888888765433333456778888888888643 34443 457778
Q ss_pred CccCeeecc
Q 036466 681 TTLKTLAIE 689 (727)
Q Consensus 681 ~~L~~L~l~ 689 (727)
++|+.+.+.
T Consensus 333 ~~L~~i~ip 341 (379)
T 4h09_A 333 KALSTISYP 341 (379)
T ss_dssp TTCCCCCCC
T ss_pred CCCCEEEEC
Confidence 888888774
No 232
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.57 E-value=0.00014 Score=84.17 Aligned_cols=135 Identities=19% Similarity=0.311 Sum_probs=76.2
Q ss_pred ceeecchhHHHHHHHHhcCCC---CCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHH
Q 036466 50 DIIGRYEDGEKIIELLTQTSD---GESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTK 126 (727)
Q Consensus 50 ~~vGr~~~~~~l~~~l~~~~~---~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 126 (727)
.++|.+..++.+...+..... ....+...+.|+|++|+|||++|+.++.. ....-...+.++++......
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~--~~~~~~~~i~i~~~~~~~~~----- 631 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEKH----- 631 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHH--HHSSGGGEEEECTTTCCSSG-----
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhccchh-----
Confidence 579999999999888765321 11123468999999999999999999873 22111233455555433211
Q ss_pred HHHHhcCCCC--CCCCh-HHHHHHHHHHhCCceEEEEEcCCCCCChhhHHHHHHhhcCCC-----------CCCEEEEec
Q 036466 127 IINSVTGGNH--GNLDP-DRLQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLGGA-----------EGSKILVTT 192 (727)
Q Consensus 127 ll~~l~~~~~--~~~~~-~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~-----------~~~~iliTs 192 (727)
....+.+... .+... ..+...+.. ....+|+||+++..+......+...+.... .++.||+||
T Consensus 632 ~~s~l~g~~~~~~G~~~~g~l~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~ts 708 (854)
T 1qvr_A 632 AVSRLIGAPPGYVGYEEGGQLTEAVRR---RPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTS 708 (854)
T ss_dssp GGGGC--------------CHHHHHHH---CSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEEC
T ss_pred HHHHHcCCCCCCcCccccchHHHHHHh---CCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEec
Confidence 0111111100 01110 112222222 234699999998888777777777776431 244477777
Q ss_pred Cc
Q 036466 193 RS 194 (727)
Q Consensus 193 r~ 194 (727)
..
T Consensus 709 n~ 710 (854)
T 1qvr_A 709 NL 710 (854)
T ss_dssp CT
T ss_pred Cc
Confidence 64
No 233
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.52 E-value=0.00012 Score=83.67 Aligned_cols=134 Identities=18% Similarity=0.251 Sum_probs=75.4
Q ss_pred CceeecchhHHHHHHHHhcCCCC---CCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHH
Q 036466 49 SDIIGRYEDGEKIIELLTQTSDG---ESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMT 125 (727)
Q Consensus 49 ~~~vGr~~~~~~l~~~l~~~~~~---~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 125 (727)
..++|.+..++.+...+.....+ ...+...+.++|++|+|||++|+.++.. .. ...+.++++......
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~--l~---~~~~~i~~s~~~~~~---- 528 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA--LG---IELLRFDMSEYMERH---- 528 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHH--HT---CEEEEEEGGGCSSSS----
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHH--hc---CCEEEEechhhcchh----
Confidence 46889999999888877543211 1123457999999999999999999873 21 233455554432210
Q ss_pred HHHHHhcCCCCCCCChH-HHHHHHHHHhC-CceEEEEEcCCCCCChhhHHHHHHhhcCC-----------CCCCEEEEec
Q 036466 126 KIINSVTGGNHGNLDPD-RLQKVLRDSLN-GKRYLLVMDDVWNEDPRAWGELKSLLLGG-----------AEGSKILVTT 192 (727)
Q Consensus 126 ~ll~~l~~~~~~~~~~~-~~~~~l~~~l~-~~~~LlvlDd~~~~~~~~~~~~~~~l~~~-----------~~~~~iliTs 192 (727)
....+.+... . ... +....+...++ ....+|+||+++.........+...+... -.+..||.||
T Consensus 529 -~~~~l~g~~~-g-~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~ts 605 (758)
T 1r6b_X 529 -TVSRLIGAPP-G-YVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTT 605 (758)
T ss_dssp -CCSSSCCCCS-C-SHHHHHTTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEE
T ss_pred -hHhhhcCCCC-C-CcCccccchHHHHHHhCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEec
Confidence 0011111111 1 111 00111222222 34679999999888776666666666432 0235577777
Q ss_pred Cc
Q 036466 193 RS 194 (727)
Q Consensus 193 r~ 194 (727)
..
T Consensus 606 N~ 607 (758)
T 1r6b_X 606 NA 607 (758)
T ss_dssp CS
T ss_pred Cc
Confidence 54
No 234
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.38 E-value=0.0023 Score=66.40 Aligned_cols=50 Identities=24% Similarity=0.269 Sum_probs=35.7
Q ss_pred CceeecchhHHHHHHHHh----cCC--------------------CCCCCCeEEEEEEcCCCCcHHHHHHHHhc
Q 036466 49 SDIIGRYEDGEKIIELLT----QTS--------------------DGESETVSVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 49 ~~~vGr~~~~~~l~~~l~----~~~--------------------~~~~~~~~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
..++|.++..+.|..++. ... .+.......+.++|++|+|||++|+.++.
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHH
Confidence 357899999988887772 000 00001234689999999999999999987
No 235
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.36 E-value=0.00041 Score=70.63 Aligned_cols=153 Identities=13% Similarity=0.105 Sum_probs=88.0
Q ss_pred CceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHH
Q 036466 49 SDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKII 128 (727)
Q Consensus 49 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll 128 (727)
..++|+++.++.+...+... ..+.++|++|+|||++|+.++.. .... ...+.+.......++.....
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--------~~vll~G~pGtGKT~la~~la~~--~~~~---~~~i~~~~~~~~~~l~g~~~ 93 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--------GHILLEGVPGLAKTLSVNTLAKT--MDLD---FHRIQFTPDLLPSDLIGTMI 93 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--------CCEEEESCCCHHHHHHHHHHHHH--TTCC---EEEEECCTTCCHHHHHEEEE
T ss_pred cceeCcHHHHHHHHHHHHcC--------CeEEEECCCCCcHHHHHHHHHHH--hCCC---eEEEecCCCCChhhcCCcee
Confidence 35889999999998888652 25999999999999999998873 2222 22344433333333221110
Q ss_pred HHhcCCCCCCCChHHHHHHHHHHhCC---ceEEEEEcCCCCCChhhHHHHHHhhcCC-----------CCCCEEEEecCc
Q 036466 129 NSVTGGNHGNLDPDRLQKVLRDSLNG---KRYLLVMDDVWNEDPRAWGELKSLLLGG-----------AEGSKILVTTRS 194 (727)
Q Consensus 129 ~~l~~~~~~~~~~~~~~~~l~~~l~~---~~~LlvlDd~~~~~~~~~~~~~~~l~~~-----------~~~~~iliTsr~ 194 (727)
.... .. .. .... ...++++|+++.........+...+... .....++.|+..
T Consensus 94 ---~~~~-~~-~~---------~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np 159 (331)
T 2r44_A 94 ---YNQH-KG-NF---------EVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNP 159 (331)
T ss_dssp ---EETT-TT-EE---------EEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECT
T ss_pred ---ecCC-CC-ce---------EeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCC
Confidence 0000 00 00 0000 1258999999887766655555555321 224555556552
Q ss_pred hH------HHHHHhhcCCCCceecCCCChhhHHHHHHHhhc
Q 036466 195 NK------VALIMATMRGTTGYNLQELPYKDCLSLFMKCAF 229 (727)
Q Consensus 195 ~~------~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~ 229 (727)
.. +...+.. +....+.+...+.++..+++.+...
T Consensus 160 ~~~~~~~~l~~~l~~-Rf~~~i~i~~p~~~~~~~il~~~~~ 199 (331)
T 2r44_A 160 VEQEGTYPLPEAQVD-RFMMKIHLTYLDKESELEVMRRVSN 199 (331)
T ss_dssp TCCSCCCCCCHHHHT-TSSEEEECCCCCHHHHHHHHHHHHC
T ss_pred CcccCcccCCHHHHh-heeEEEEcCCCCHHHHHHHHHhccc
Confidence 21 1111111 1123589999999999999988763
No 236
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.33 E-value=0.0019 Score=68.77 Aligned_cols=182 Identities=14% Similarity=0.069 Sum_probs=95.0
Q ss_pred CCCCCceeecchhHHHHHHHHhcCC------CCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCC
Q 036466 45 FVRPSDIIGRYEDGEKIIELLTQTS------DGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDS 118 (727)
Q Consensus 45 ~~~~~~~vGr~~~~~~l~~~l~~~~------~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~ 118 (727)
.....+++|.++...++.+...... .-....++-++|+|++|+|||+||+.++.. .. ...++++.....
T Consensus 27 ~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~--~~---~~~i~i~g~~~~ 101 (499)
T 2dhr_A 27 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE--AR---VPFITASGSDFV 101 (499)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH--TT---CCEEEEEGGGGT
T ss_pred CCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH--hC---CCEEEEehhHHH
Confidence 3445679999988777776543210 000112345999999999999999999873 22 223344432210
Q ss_pred CHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhC----CceEEEEEcCCCCCC----------hhh----HHHHHHhhc
Q 036466 119 GKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLN----GKRYLLVMDDVWNED----------PRA----WGELKSLLL 180 (727)
Q Consensus 119 ~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~----~~~~LlvlDd~~~~~----------~~~----~~~~~~~l~ 180 (727)
. .........+...+. ..+.++++|+++... ..+ ...+...+.
T Consensus 102 ~-------------------~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ld 162 (499)
T 2dhr_A 102 E-------------------MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMD 162 (499)
T ss_dssp S-------------------SCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGG
T ss_pred H-------------------hhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhc
Confidence 0 001111122333232 246899999996431 111 223333333
Q ss_pred CC--CCCCEEEEecCchHHHH-HH-hhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCch
Q 036466 181 GG--AEGSKILVTTRSNKVAL-IM-ATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIP 254 (727)
Q Consensus 181 ~~--~~~~~iliTsr~~~~~~-~~-~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 254 (727)
.. .....++.+|..+.... .. .....+..+.+...+.++-.+++............ .....+++.+.|+.
T Consensus 163 g~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~d----v~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 163 GFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAED----VDLALLAKRTPGFV 236 (499)
T ss_dssp GCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCS----STTHHHHTTSCSCC
T ss_pred ccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChH----HHHHHHHHhcCCCC
Confidence 22 23445555666553311 11 11123357888888988888888765422111111 11355677777765
No 237
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.32 E-value=0.00035 Score=79.73 Aligned_cols=163 Identities=16% Similarity=0.164 Sum_probs=88.2
Q ss_pred CCCCceeecchhHHHHHHHHhcCC-------CCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCC
Q 036466 46 VRPSDIIGRYEDGEKIIELLTQTS-------DGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDS 118 (727)
Q Consensus 46 ~~~~~~vGr~~~~~~l~~~l~~~~-------~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~ 118 (727)
..-.+++|.++.+++|.+++..+. .-.-...+.|+|+|++|+||||||+.++.. ....| +.++..
T Consensus 201 v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~--l~~~~---i~v~~~--- 272 (806)
T 1ypw_A 201 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGP--- 272 (806)
T ss_dssp CCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT--TTCEE---EEEEHH---
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCcE---EEEEch---
Confidence 334568999999999998875310 001133567999999999999999999863 22222 333321
Q ss_pred CHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCCh-----------hhHHHHHHhhcCC--CCC
Q 036466 119 GKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDP-----------RAWGELKSLLLGG--AEG 185 (727)
Q Consensus 119 ~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~-----------~~~~~~~~~l~~~--~~~ 185 (727)
.+.. .........+...+.......+.++++|+++.... .....+...+... ..+
T Consensus 273 -----------~l~~-~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~ 340 (806)
T 1ypw_A 273 -----------EIMS-KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH 340 (806)
T ss_dssp -----------HHSS-SSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSC
T ss_pred -----------Hhhh-hhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhccccc
Confidence 1110 01111112222333333344678999999954211 1112233333322 234
Q ss_pred CEEEEecCchH-HHHHHhh-cCCCCceecCCCChhhHHHHHHHhh
Q 036466 186 SKILVTTRSNK-VALIMAT-MRGTTGYNLQELPYKDCLSLFMKCA 228 (727)
Q Consensus 186 ~~iliTsr~~~-~~~~~~~-~~~~~~~~l~~l~~~~~~~l~~~~~ 228 (727)
..++.||.... +...+.. ......+.+...+.++..+++....
T Consensus 341 v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp CEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred EEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 55666665532 1111111 1122457788888888888888765
No 238
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.32 E-value=0.00098 Score=63.21 Aligned_cols=86 Identities=13% Similarity=0.085 Sum_probs=51.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhc-----------CCCCCC-CChHH
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVT-----------GGNHGN-LDPDR 143 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~-----------~~~~~~-~~~~~ 143 (727)
-.+++|.|++|+||||++..++. ..-..++|++.....+...+. +++...+ ...... .+...
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPERLV-QMAETRGLNPEEALSRFILFTPSDFKEQRR 93 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHHHHH-HHHHTTTCCHHHHHHHEEEECCTTTSHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHHHHH-HHHHhcCCChHHHhhcEEEEecCCHHHHHH
Confidence 35899999999999999999987 223467788876544444333 2333221 111111 11223
Q ss_pred HHHHHHHHhCCceEEEEEcCCCCC
Q 036466 144 LQKVLRDSLNGKRYLLVMDDVWNE 167 (727)
Q Consensus 144 ~~~~l~~~l~~~~~LlvlDd~~~~ 167 (727)
..+.++.....++-++|+|.+...
T Consensus 94 ~~~~~~~l~~~~~~lliiD~~~~~ 117 (220)
T 2cvh_A 94 VIGSLKKTVDSNFALVVVDSITAH 117 (220)
T ss_dssp HHHHHHHHCCTTEEEEEEECCCCC
T ss_pred HHHHHHHHhhcCCCEEEEcCcHHH
Confidence 444445555445789999998654
No 239
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.31 E-value=0.00018 Score=72.13 Aligned_cols=56 Identities=16% Similarity=0.195 Sum_probs=36.2
Q ss_pred cchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhH-hcCCceEEEEe
Q 036466 54 RYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVE-EHFELKIWICV 114 (727)
Q Consensus 54 r~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~-~~f~~~~~~~~ 114 (727)
+...++.+.+++..... ...+.+.|+|++|+|||+||..++.. .. .....+.|+.+
T Consensus 133 ~~~~~~~~~~~i~~~~~---~~~~~lll~G~~GtGKT~La~aia~~--~~~~~g~~v~~~~~ 189 (308)
T 2qgz_A 133 RMEAFSAILDFVEQYPS---AEQKGLYLYGDMGIGKSYLLAAMAHE--LSEKKGVSTTLLHF 189 (308)
T ss_dssp HHHHHHHHHHHHHHCSC---SSCCEEEEECSTTSSHHHHHHHHHHH--HHHHSCCCEEEEEH
T ss_pred HHHHHHHHHHHHHhccc---cCCceEEEECCCCCCHHHHHHHHHHH--HHHhcCCcEEEEEH
Confidence 34455556666665321 12467999999999999999999984 33 33334556554
No 240
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.28 E-value=0.0016 Score=63.97 Aligned_cols=161 Identities=18% Similarity=0.085 Sum_probs=80.4
Q ss_pred CCceeecchhHHHHHHHHhcCCC-------CCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCH
Q 036466 48 PSDIIGRYEDGEKIIELLTQTSD-------GESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGK 120 (727)
Q Consensus 48 ~~~~vGr~~~~~~l~~~l~~~~~-------~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~ 120 (727)
-.++.|-++..+.|.+.+..+.. -.-...+-++|+|++|+||||||+.++.. ... ..+++......+.
T Consensus 9 ~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~--~~~---~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 9 WADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANE--SGL---NFISVKGPELLNM 83 (274)
T ss_dssp ---CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHH--TTC---EEEEEETTTTCSS
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHH--cCC---CEEEEEcHHHHhh
Confidence 34678888888888765421100 00011223999999999999999999873 221 2233332211100
Q ss_pred HHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCCh-----------hhHHHHHHhhcCC--CCCCE
Q 036466 121 RQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDP-----------RAWGELKSLLLGG--AEGSK 187 (727)
Q Consensus 121 ~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~-----------~~~~~~~~~l~~~--~~~~~ 187 (727)
........+...+.......+.++++|+++.... .....+...+... ....-
T Consensus 84 ---------------~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i 148 (274)
T 2x8a_A 84 ---------------YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVF 148 (274)
T ss_dssp ---------------TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEE
T ss_pred ---------------hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEE
Confidence 0000000111112222234678999999975310 1122233333322 12333
Q ss_pred EEEecCchHH-HHHHhh-cCCCCceecCCCChhhHHHHHHHhh
Q 036466 188 ILVTTRSNKV-ALIMAT-MRGTTGYNLQELPYKDCLSLFMKCA 228 (727)
Q Consensus 188 iliTsr~~~~-~~~~~~-~~~~~~~~l~~l~~~~~~~l~~~~~ 228 (727)
++.+|..+.. ...... ......+.+...+.++..++++...
T Consensus 149 ~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 149 IMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp EEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred EEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 4445544432 222221 1234678888889999999988765
No 241
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.28 E-value=0.0057 Score=62.42 Aligned_cols=158 Identities=12% Similarity=-0.017 Sum_probs=101.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHH-HhCC
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVTGGNHGNLDPDRLQKVLRD-SLNG 154 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~-~l~~ 154 (727)
.++..++|+.|.||++.++.+..... ...|+....+...+..++.+ +.+.... -+-+
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~---------------------l~~~~~~~plf~ 75 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAA-AQGFEEHHTFSIDPNTDWNA---------------------IFSLCQAMSLFA 75 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHH-HHTCCEEEEEECCTTCCHHH---------------------HHHHHHHHHHCC
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHH-hCCCCeeEEEEecCCCCHHH---------------------HHHHhcCcCCcc
Confidence 46899999999999999999987422 22332211122222222222 2222221 1224
Q ss_pred ceEEEEEcCCCC-CChhhHHHHHHhhcCCCCCCEEEEecCc-------hHHHHHHhhcCCCCceecCCCChhhHHHHHHH
Q 036466 155 KRYLLVMDDVWN-EDPRAWGELKSLLLGGAEGSKILVTTRS-------NKVALIMATMRGTTGYNLQELPYKDCLSLFMK 226 (727)
Q Consensus 155 ~~~LlvlDd~~~-~~~~~~~~~~~~l~~~~~~~~iliTsr~-------~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~ 226 (727)
.+-++|+|+++. .....++.+..++....+++.+|+++.. ..+...+. .....++..+++.++...++.+
T Consensus 76 ~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~--sr~~~~~~~~l~~~~l~~~l~~ 153 (343)
T 1jr3_D 76 SRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALA--NRSVQVTCQTPEQAQLPRWVAA 153 (343)
T ss_dssp SCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHT--TTCEEEEECCCCTTHHHHHHHH
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHH--hCceEEEeeCCCHHHHHHHHHH
Confidence 566788899987 6666778888888766667777766543 12333322 2336899999999999999988
Q ss_pred hhccCCCCCChhHHHHHHHHHHHcCCchHHHHHH
Q 036466 227 CAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVRTV 260 (727)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 260 (727)
.+...+.. ...+++..+++.++|....+...
T Consensus 154 ~~~~~g~~---i~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 154 RAKQLNLE---LDDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp HHHHTTCE---ECHHHHHHHHHSSTTCHHHHHHH
T ss_pred HHHHcCCC---CCHHHHHHHHHHhchHHHHHHHH
Confidence 77544322 33467889999999988877643
No 242
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.27 E-value=0.00023 Score=69.15 Aligned_cols=81 Identities=19% Similarity=0.127 Sum_probs=57.2
Q ss_pred hhcCCCcceEEEecCCCccccc---cccCCCCcCcEEeccCCccccccCccccCCC--CCCEeecCCCCCCcccC-----
Q 036466 425 CISKSKSLRVLVLTNSAIEVLP---RKMGNLKQLRHLDLSGNRKIKKLPNSICELQ--SLQTLNLGDCLELEELP----- 494 (727)
Q Consensus 425 ~~~~~~~L~~L~l~~~~~~~l~---~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~--~L~~L~l~~~~~~~~~~----- 494 (727)
...++++|++|+|++|.+..++ ..+..+++|+.|+|++|.+.+ + ..+..+. +|++|++++|.....+|
T Consensus 165 ~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~-~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y 242 (267)
T 3rw6_A 165 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS-E-RELDKIKGLKLEELWLDGNSLCDTFRDQSTY 242 (267)
T ss_dssp HHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS-G-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHH
T ss_pred HHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC-c-hhhhhcccCCcceEEccCCcCccccCcchhH
Confidence 3356889999999999988654 445678999999999888543 2 2234444 88899998887665554
Q ss_pred --hhhcccccCceeE
Q 036466 495 --KDIRYLVSLRMFV 507 (727)
Q Consensus 495 --~~l~~l~~L~~L~ 507 (727)
..+..+++|+.||
T Consensus 243 ~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 243 ISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHHCTTCCEES
T ss_pred HHHHHHHCcccCeEC
Confidence 2356677777764
No 243
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.25 E-value=0.0014 Score=63.67 Aligned_cols=183 Identities=13% Similarity=0.108 Sum_probs=88.1
Q ss_pred CCceeecchhHHHHHHHHhcCCC------CCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHH
Q 036466 48 PSDIIGRYEDGEKIIELLTQTSD------GESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKR 121 (727)
Q Consensus 48 ~~~~vGr~~~~~~l~~~l~~~~~------~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 121 (727)
..+++|.++...++.+....... -.-...+-++|+|++|+|||||++.++.. .. ...++++..
T Consensus 15 ~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~--~~---~~~i~~~~~------ 83 (254)
T 1ixz_A 15 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE--AR---VPFITASGS------ 83 (254)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHH--TT---CCEEEEEHH------
T ss_pred HHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHH--hC---CCEEEeeHH------
Confidence 35688988777666654422100 00011233999999999999999999873 22 222333221
Q ss_pred HHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCC----------hhh----HHHHHHhhcCC-CC-C
Q 036466 122 QIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNED----------PRA----WGELKSLLLGG-AE-G 185 (727)
Q Consensus 122 ~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~----------~~~----~~~~~~~l~~~-~~-~ 185 (727)
++ .... .......+...+...-...+.++++|+++... ... ...+...+... .. .
T Consensus 84 ~~----~~~~-----~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~ 154 (254)
T 1ixz_A 84 DF----VEMF-----VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTA 154 (254)
T ss_dssp HH----HHSC-----TTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCC
T ss_pred HH----HHHH-----hhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCC
Confidence 11 1100 00001112222222223457899999994310 011 12233333322 12 2
Q ss_pred CEEEEecCchHHHH-HHh-hcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCch
Q 036466 186 SKILVTTRSNKVAL-IMA-TMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIP 254 (727)
Q Consensus 186 ~~iliTsr~~~~~~-~~~-~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 254 (727)
..++.+|..+.... ... .......+.++..+.++-.++++........... .....+++.+.|.-
T Consensus 155 ~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~----~~~~~la~~~~G~~ 221 (254)
T 1ixz_A 155 IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAED----VDLALLAKRTPGFV 221 (254)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTT----CCHHHHHHTCTTCC
T ss_pred EEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcc----cCHHHHHHHcCCCC
Confidence 33444555443321 111 1123456888888888888888765522111111 11345666676643
No 244
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.22 E-value=0.00028 Score=68.46 Aligned_cols=79 Identities=11% Similarity=0.130 Sum_probs=43.5
Q ss_pred CCCCCCEeecCCCCCCc--ccChhhcccccCceeEecccccccccccCCCCC--CCcEEeccccCCchhh-------hhh
Q 036466 475 ELQSLQTLNLGDCLELE--ELPKDIRYLVSLRMFVVTTKQKSLLESGIGCLS--SLRFLMISNCGNLEYL-------FED 543 (727)
Q Consensus 475 ~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~--~L~~L~l~~~~~~~~l-------~~~ 543 (727)
++++|++|+|++|.+.+ .+|..+..+++|+.|+|++|.+.... .+..+. +|++|.+.+|.....+ ...
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 45667777777665544 44555566677777777777666431 122222 5666666665543322 123
Q ss_pred ccCCCCcCeee
Q 036466 544 IDQLSVLRSLV 554 (727)
Q Consensus 544 l~~l~~L~~L~ 554 (727)
+..+|+|+.|+
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 45556666654
No 245
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.22 E-value=0.00033 Score=76.23 Aligned_cols=165 Identities=15% Similarity=0.153 Sum_probs=78.6
Q ss_pred CceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHH
Q 036466 49 SDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKII 128 (727)
Q Consensus 49 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll 128 (727)
.+++|-+...+.+.+.+.-..-........++++|++|+||||||+.++.. ....| ..+.+........+.....
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~--l~~~~---~~i~~~~~~~~~~~~g~~~ 155 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKS--LGRKF---VRISLGGVRDESEIRGHRR 155 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHH--HTCEE---EEECCCC------------
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHh--cCCCe---EEEEecccchhhhhhhHHH
Confidence 347888887777765542110000113458999999999999999999873 33222 1223332222111111100
Q ss_pred HHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCChhh----HHHHHHhhcCC---------------CCCCEEE
Q 036466 129 NSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDPRA----WGELKSLLLGG---------------AEGSKIL 189 (727)
Q Consensus 129 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~----~~~~~~~l~~~---------------~~~~~il 189 (727)
.. ...........+.......+ +++||+++...... ...+...+... .....+|
T Consensus 156 ~~------ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI 228 (543)
T 3m6a_A 156 TY------VGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFI 228 (543)
T ss_dssp --------------CHHHHHHTTCSSSE-EEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEE
T ss_pred HH------hccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEE
Confidence 00 11111112222222222344 88899998765321 12233333211 0345666
Q ss_pred EecCchH-HHH-HHhhcCCCCceecCCCChhhHHHHHHHhh
Q 036466 190 VTTRSNK-VAL-IMATMRGTTGYNLQELPYKDCLSLFMKCA 228 (727)
Q Consensus 190 iTsr~~~-~~~-~~~~~~~~~~~~l~~l~~~~~~~l~~~~~ 228 (727)
.||.... +.. ..... ..+.+.+++.++-.+++.+..
T Consensus 229 ~ttN~~~~l~~aL~~R~---~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 229 ATANNLATIPGPLRDRM---EIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp EECSSTTTSCHHHHHHE---EEEECCCCCHHHHHHHHHHTH
T ss_pred eccCccccCCHHHHhhc---ceeeeCCCCHHHHHHHHHHHH
Confidence 6665432 111 11122 568999999998888887654
No 246
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.17 E-value=0.0022 Score=63.29 Aligned_cols=186 Identities=13% Similarity=0.103 Sum_probs=90.8
Q ss_pred CCCCCceeecchhHHHHHHHHhcCCC------CCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCC
Q 036466 45 FVRPSDIIGRYEDGEKIIELLTQTSD------GESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDS 118 (727)
Q Consensus 45 ~~~~~~~vGr~~~~~~l~~~l~~~~~------~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~ 118 (727)
.....+++|.++..+++.+....... -.-...+-++|+|++|+|||||++.++.. .. ...++++..
T Consensus 36 ~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~--~~---~~~i~~~~~--- 107 (278)
T 1iy2_A 36 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE--AR---VPFITASGS--- 107 (278)
T ss_dssp CCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHH--TT---CCEEEEEHH---
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHH--cC---CCEEEecHH---
Confidence 34446789988877777655432100 00011223899999999999999999873 22 222333321
Q ss_pred CHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCC----------ChhhH----HHHHHhhcCC-C
Q 036466 119 GKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNE----------DPRAW----GELKSLLLGG-A 183 (727)
Q Consensus 119 ~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~----------~~~~~----~~~~~~l~~~-~ 183 (727)
++. ... .......+...+.......+.++++|+++.. ..... ..+...+... .
T Consensus 108 ---~~~----~~~-----~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~ 175 (278)
T 1iy2_A 108 ---DFV----EMF-----VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 175 (278)
T ss_dssp ---HHH----HST-----TTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCT
T ss_pred ---HHH----HHH-----hhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCC
Confidence 111 100 0000111222222322345789999999421 00111 2222223222 1
Q ss_pred CC-CEEEEecCchHH-HHHHh-hcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCch
Q 036466 184 EG-SKILVTTRSNKV-ALIMA-TMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIP 254 (727)
Q Consensus 184 ~~-~~iliTsr~~~~-~~~~~-~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 254 (727)
.. ..++.++..+.. ..... .......+.++..+.++-.+++............ .....+++.+.|+.
T Consensus 176 ~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~----~~~~~la~~~~G~~ 245 (278)
T 1iy2_A 176 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAED----VDLALLAKRTPGFV 245 (278)
T ss_dssp TCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTT----CCHHHHHHTCTTCC
T ss_pred CCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcc----cCHHHHHHHcCCCC
Confidence 22 234444444322 22221 1223467899999999888888766532111111 11345666776654
No 247
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.16 E-value=0.0041 Score=62.92 Aligned_cols=86 Identities=15% Similarity=0.125 Sum_probs=55.9
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhcCCC-----CCCCChHHHHHHHH
Q 036466 75 TVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVTGGN-----HGNLDPDRLQKVLR 149 (727)
Q Consensus 75 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-----~~~~~~~~~~~~l~ 149 (727)
.-+++.|+|++|+|||||+.+++.. ....-..++|++........ .++.++... ....+.++....+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~--~~~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAE--AQKMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 3479999999999999999999974 33333457788876655543 344443221 12345566666666
Q ss_pred HHhC-CceEEEEEcCCCCC
Q 036466 150 DSLN-GKRYLLVMDDVWNE 167 (727)
Q Consensus 150 ~~l~-~~~~LlvlDd~~~~ 167 (727)
...+ .+.-++|+|.+...
T Consensus 133 ~l~~~~~~dlvVIDSi~~l 151 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVAAL 151 (356)
T ss_dssp HHHHTSCCSEEEEECTTTC
T ss_pred HHhhhcCCCeEEehHhhhh
Confidence 6554 35668999998543
No 248
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.15 E-value=0.00042 Score=68.31 Aligned_cols=70 Identities=21% Similarity=0.219 Sum_probs=46.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEe--cCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhC
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICV--SEDSGKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLN 153 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~--~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~ 153 (727)
.+++.|+|++|+|||+||.+++.. . ...++|++. .+..+. ...+.+...+.+.+.+.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~---~--G~~VlyIs~~~eE~v~~----------------~~~~le~~l~~i~~~l~ 181 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA---L--GGKDKYATVRFGEPLSG----------------YNTDFNVFVDDIARAML 181 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH---H--HTTSCCEEEEBSCSSTT----------------CBCCHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh---C--CCCEEEEEecchhhhhh----------------hhcCHHHHHHHHHHHHh
Confidence 357899999999999999999873 2 223557777 222000 01345566666666665
Q ss_pred CceEEEEEcCCCCC
Q 036466 154 GKRYLLVMDDVWNE 167 (727)
Q Consensus 154 ~~~~LlvlDd~~~~ 167 (727)
+.+ ++|+|++...
T Consensus 182 ~~~-LLVIDsI~aL 194 (331)
T 2vhj_A 182 QHR-VIVIDSLKNV 194 (331)
T ss_dssp HCS-EEEEECCTTT
T ss_pred hCC-EEEEeccccc
Confidence 556 9999999654
No 249
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.12 E-value=0.009 Score=60.93 Aligned_cols=85 Identities=13% Similarity=0.053 Sum_probs=56.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhcCCC-----CCCCChHHHHHHHHH
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVTGGN-----HGNLDPDRLQKVLRD 150 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-----~~~~~~~~~~~~l~~ 150 (727)
-+++.|+|++|+||||||.+++... ...-..++|++........ .+..++... ....+.+++.+.+.+
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~--~~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~ 146 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQA--QKAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMEL 146 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHH--HHCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHH
Confidence 4589999999999999999998743 3233468899887655443 233443210 122355666677766
Q ss_pred HhCC-ceEEEEEcCCCCC
Q 036466 151 SLNG-KRYLLVMDDVWNE 167 (727)
Q Consensus 151 ~l~~-~~~LlvlDd~~~~ 167 (727)
..+. ..-+||+|.+...
T Consensus 147 l~~~~~~~lVVIDsl~~l 164 (366)
T 1xp8_A 147 LVRSGAIDVVVVDSVAAL 164 (366)
T ss_dssp HHTTTCCSEEEEECTTTC
T ss_pred HHhcCCCCEEEEeChHHh
Confidence 6654 4569999998553
No 250
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.11 E-value=0.0014 Score=73.47 Aligned_cols=163 Identities=15% Similarity=0.130 Sum_probs=86.8
Q ss_pred CCCCceeecchhHHHHHHHHhcCCC-------CCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCC
Q 036466 46 VRPSDIIGRYEDGEKIIELLTQTSD-------GESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDS 118 (727)
Q Consensus 46 ~~~~~~vGr~~~~~~l~~~l~~~~~-------~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~ 118 (727)
..-.++.|.++..++|.+.+.-+.. ..-..++-+.++|++|.|||.+|++++.. .... |+.+..
T Consensus 474 v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e--~~~~-----f~~v~~-- 544 (806)
T 3cf2_A 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQAN-----FISIKG-- 544 (806)
T ss_dssp CCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHT--TTCE-----EEECCH--
T ss_pred CCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHH--hCCc-----eEEecc--
Confidence 4445677888888888877643311 11234567899999999999999999983 2222 333321
Q ss_pred CHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCCh--------------hhHHHHHHhhcCC--
Q 036466 119 GKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDP--------------RAWGELKSLLLGG-- 182 (727)
Q Consensus 119 ~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~--------------~~~~~~~~~l~~~-- 182 (727)
. +++ ..+.+.....+.+.+..+-+..+++|+||+++..-. .....+...+...
T Consensus 545 --~----~l~-----s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~ 613 (806)
T 3cf2_A 545 --P----ELL-----TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST 613 (806)
T ss_dssp --H----HHH-----TTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCS
T ss_pred --c----hhh-----ccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCC
Confidence 1 111 122334444454555555556899999999965310 0122334444332
Q ss_pred CCCCEEEEecC-chHHHHHHhh-cCCCCceecCCCChhhHHHHHHHhh
Q 036466 183 AEGSKILVTTR-SNKVALIMAT-MRGTTGYNLQELPYKDCLSLFMKCA 228 (727)
Q Consensus 183 ~~~~~iliTsr-~~~~~~~~~~-~~~~~~~~l~~l~~~~~~~l~~~~~ 228 (727)
..+.-||-||. ...+...+.. -+....+.+..-+.++-.++|+...
T Consensus 614 ~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l 661 (806)
T 3cf2_A 614 KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp SSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTS
T ss_pred CCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHh
Confidence 22333333443 3322222221 1234678887777777777776654
No 251
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.00 E-value=0.00089 Score=62.99 Aligned_cols=112 Identities=14% Similarity=0.015 Sum_probs=62.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhcCCCC--CCCChHHHHHHHHHHhC
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVTGGNH--GNLDPDRLQKVLRDSLN 153 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~--~~~~~~~~~~~l~~~l~ 153 (727)
-.+++++|++|+||||++..++.+ ...+-..++++...... . ...+++..++.... .-....++.+.+.+...
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r--~~~~g~kVli~~~~~d~--r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~ 86 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHR--LEYADVKYLVFKPKIDT--R-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNSF 86 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHH--HHHTTCCEEEEEECCCG--G-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTS
T ss_pred cEEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEEeccCc--h-HHHHHHHhcCCCccccccCCHHHHHHHHHHHhh
Confidence 468999999999999999998884 33333345555433221 1 11223333321111 11223344455554444
Q ss_pred Cc-eEEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEEecCch
Q 036466 154 GK-RYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSN 195 (727)
Q Consensus 154 ~~-~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~iliTsr~~ 195 (727)
+. .-+||+|+++..+....+.+ ..+.+ .+..||+|-+..
T Consensus 87 ~~~~dvViIDEaQ~l~~~~ve~l-~~L~~--~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 87 NDETKVIGIDEVQFFDDRICEVA-NILAE--NGFVVIISGLDK 126 (223)
T ss_dssp CTTCCEEEECSGGGSCTHHHHHH-HHHHH--TTCEEEEECCSB
T ss_pred CCCCCEEEEecCccCcHHHHHHH-HHHHh--CCCeEEEEeccc
Confidence 33 45999999976654333333 33333 277899988743
No 252
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.98 E-value=0.0063 Score=61.84 Aligned_cols=85 Identities=14% Similarity=0.077 Sum_probs=54.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhcCCC-----CCCCChHHHHHHHHH
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVTGGN-----HGNLDPDRLQKVLRD 150 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-----~~~~~~~~~~~~l~~ 150 (727)
-+++.|+|++|+|||||+.+++.. ....-..++|++........ .++.++... ....+.++..+.+..
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~--~~~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~~ 133 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVAN--AQAAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIADM 133 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 458999999999999999999874 33333467899887655442 234443211 112345555555555
Q ss_pred HhCC-ceEEEEEcCCCCC
Q 036466 151 SLNG-KRYLLVMDDVWNE 167 (727)
Q Consensus 151 ~l~~-~~~LlvlDd~~~~ 167 (727)
.... +.-+||+|.+...
T Consensus 134 l~~~~~~~lIVIDsl~~l 151 (349)
T 2zr9_A 134 LVRSGALDIIVIDSVAAL 151 (349)
T ss_dssp HHTTTCCSEEEEECGGGC
T ss_pred HHhcCCCCEEEEcChHhh
Confidence 5543 5679999998543
No 253
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.93 E-value=0.0089 Score=54.19 Aligned_cols=70 Identities=9% Similarity=0.137 Sum_probs=39.3
Q ss_pred hCCceEEEEEcCCCCC---ChhhHHHHHHhhcCCCCCCEEEEec---CchHHHHHHhhcCCCCceecCCCChhhHHHH
Q 036466 152 LNGKRYLLVMDDVWNE---DPRAWGELKSLLLGGAEGSKILVTT---RSNKVALIMATMRGTTGYNLQELPYKDCLSL 223 (727)
Q Consensus 152 l~~~~~LlvlDd~~~~---~~~~~~~~~~~l~~~~~~~~iliTs---r~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l 223 (727)
+..++-++++|++... +......+...+.. .+..+|++| .+...............+++...+.++..+-
T Consensus 96 l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~--~~~~~i~~~H~~h~~~~~~~i~~r~~~~i~~~~~~~r~~~~~~ 171 (178)
T 1ye8_A 96 KKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD--PNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPENRDVILED 171 (178)
T ss_dssp HHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC--TTSEEEEECCSSCCSHHHHHHHTCTTCEEEECCTTTTTTHHHH
T ss_pred cccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc--CCCeEEEEEccCCCchHHHHHHhcCCcEEEEecCcCHHHHHHH
Confidence 5667789999995322 33334445555554 355466666 3555555444333346777777666555443
No 254
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.79 E-value=0.0042 Score=59.39 Aligned_cols=114 Identities=18% Similarity=0.181 Sum_probs=61.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhcCCCC--------------------
Q 036466 77 SVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVTGGNH-------------------- 136 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-------------------- 136 (727)
.+++|.|++|+|||||++.++... ...-..++|+.... ...++...+ ..++....
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~--~~~~~~v~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKG--LRDGDPCIYVTTEE--SRDSIIRQA-KQFNWDFEEYIEKKLIIIDALMKEKEDQ 98 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH--HHHTCCEEEEESSS--CHHHHHHHH-HHTTCCCGGGBTTTEEEEECCC----CT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH--HHCCCeEEEEEccc--CHHHHHHHH-HHhcchHHHHhhCCEEEEeccccccCce
Confidence 589999999999999999999632 22223566766533 334433332 23321100
Q ss_pred ---CCCChHHHHHHHHHHhCC-ce--EEEEEcCCCCC---ChhhHHHHHHhhcC--CCCCCEEEEecCch
Q 036466 137 ---GNLDPDRLQKVLRDSLNG-KR--YLLVMDDVWNE---DPRAWGELKSLLLG--GAEGSKILVTTRSN 195 (727)
Q Consensus 137 ---~~~~~~~~~~~l~~~l~~-~~--~LlvlDd~~~~---~~~~~~~~~~~l~~--~~~~~~iliTsr~~ 195 (727)
...+..++...+.+.+.. ++ .++|+|..... +......+...+.. ...+..||+++...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 99 WSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 112445555555554432 33 49999998532 22233333333322 12467788888765
No 255
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.76 E-value=0.003 Score=57.50 Aligned_cols=119 Identities=16% Similarity=0.070 Sum_probs=66.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCC---CCHHHHHHHHHHHhc--CCC--CCCCC-------hH
Q 036466 77 SVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSED---SGKRQIMTKIINSVT--GGN--HGNLD-------PD 142 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~---~~~~~~~~~ll~~l~--~~~--~~~~~-------~~ 142 (727)
..|.|++..|.||||.|-..+. +..++--.+.++..... .+...++..+--++. +.. +...+ ..
T Consensus 29 g~i~v~tG~GkGKTTaA~Glal--RA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~ 106 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAA--RAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACM 106 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHH--HHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHH
Confidence 4678888888999999987777 55555455666655443 122333333310000 010 11111 11
Q ss_pred HHHHHHHHHhCC-ceEEEEEcCCCCC---ChhhHHHHHHhhcCCCCCCEEEEecCchHH
Q 036466 143 RLQKVLRDSLNG-KRYLLVMDDVWNE---DPRAWGELKSLLLGGAEGSKILVTTRSNKV 197 (727)
Q Consensus 143 ~~~~~l~~~l~~-~~~LlvlDd~~~~---~~~~~~~~~~~l~~~~~~~~iliTsr~~~~ 197 (727)
.......+.+.+ +-=|||||++... .....+.+...+........||+|+|...-
T Consensus 107 ~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~ 165 (196)
T 1g5t_A 107 AVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHR 165 (196)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCH
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcH
Confidence 222333444444 3459999998221 223445667777766678889999998643
No 256
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.74 E-value=0.0049 Score=60.43 Aligned_cols=85 Identities=8% Similarity=0.062 Sum_probs=54.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhcCCCC-----CCCChHHH-HHHHHHH
Q 036466 78 VIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVTGGNH-----GNLDPDRL-QKVLRDS 151 (727)
Q Consensus 78 ~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-----~~~~~~~~-~~~l~~~ 151 (727)
++.|+|++|+|||||+.+++.....+..-..++|++..+..... .++.++.... ...+.++. .+.+...
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 78999999999999999998743322113457899887766543 3566643211 12344554 3433333
Q ss_pred --hC-CceEEEEEcCCCCC
Q 036466 152 --LN-GKRYLLVMDDVWNE 167 (727)
Q Consensus 152 --l~-~~~~LlvlDd~~~~ 167 (727)
++ .++-++|+|.+...
T Consensus 105 ~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp HTCCTTCCEEEEEECSTTC
T ss_pred HHhhccCceEEEEeccccc
Confidence 33 46789999999554
No 257
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.62 E-value=0.0025 Score=61.44 Aligned_cols=90 Identities=12% Similarity=0.067 Sum_probs=52.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcchhhHh----cCCceEEEEecCCCCHHHHHHHHHHHhcCCC---------CCCCChH
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYNDQRVEE----HFELKIWICVSEDSGKRQIMTKIINSVTGGN---------HGNLDPD 142 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~----~f~~~~~~~~~~~~~~~~~~~~ll~~l~~~~---------~~~~~~~ 142 (727)
-.+++|.|++|+|||||++.++....... .-..++|++.........+ .+++..++... ....+..
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL-LAVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH-HHHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 35899999999999999999887321211 2356788877654344333 33444442211 0112233
Q ss_pred HH---HHHHHHHhC-CceEEEEEcCCCC
Q 036466 143 RL---QKVLRDSLN-GKRYLLVMDDVWN 166 (727)
Q Consensus 143 ~~---~~~l~~~l~-~~~~LlvlDd~~~ 166 (727)
+. .+.+.+.+. .++-++|+|++..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 103 HQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 32 233444443 4678999999854
No 258
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.61 E-value=0.012 Score=59.72 Aligned_cols=85 Identities=13% Similarity=0.056 Sum_probs=52.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhcCCC-----CCCCChHHHHHHHHH
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVTGGN-----HGNLDPDRLQKVLRD 150 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-----~~~~~~~~~~~~l~~ 150 (727)
-+++.|+|++|+||||||.+++.. ....-..++|++.....+.. .+..++... ....+.+++.+.++.
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~--~~~~g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~~~ 135 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDA 135 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHHHH
Confidence 458999999999999999999874 33333467899887655533 134443210 011234455555544
Q ss_pred HhC-CceEEEEEcCCCCC
Q 036466 151 SLN-GKRYLLVMDDVWNE 167 (727)
Q Consensus 151 ~l~-~~~~LlvlDd~~~~ 167 (727)
..+ .+.-+||+|.+...
T Consensus 136 l~~~~~~~lVVIDsl~~l 153 (356)
T 1u94_A 136 LARSGAVDVIVVDSVAAL 153 (356)
T ss_dssp HHHHTCCSEEEEECGGGC
T ss_pred HHhccCCCEEEEcCHHHh
Confidence 432 34568999998543
No 259
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.38 E-value=0.013 Score=58.41 Aligned_cols=36 Identities=14% Similarity=0.102 Sum_probs=26.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcchhhHhcCC-ceEEEEe
Q 036466 77 SVIPIVGIGGLGKTALAKLLYNDQRVEEHFE-LKIWICV 114 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~-~~~~~~~ 114 (727)
.+++|.|++|+|||||++.++.. ...... .++|+..
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~--~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQ--WGTAMGKKVGLAML 72 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH--HHHTSCCCEEEEES
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH--HHHHcCCeEEEEeC
Confidence 48999999999999999999874 332222 4666654
No 260
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.33 E-value=0.0095 Score=60.09 Aligned_cols=55 Identities=16% Similarity=0.167 Sum_probs=37.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcchhhHhc----CCceEEEEecCCCCHHHHHHHHHHHh
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYNDQRVEEH----FELKIWICVSEDSGKRQIMTKIINSV 131 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~----f~~~~~~~~~~~~~~~~~~~~ll~~l 131 (727)
-.++.|+|++|+|||+++.+++........ -..++|++.....+...+. +++..+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~ 165 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKAL 165 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHT
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHh
Confidence 458999999999999999999874221111 2467899887765555444 334444
No 261
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.31 E-value=0.027 Score=55.70 Aligned_cols=87 Identities=13% Similarity=0.069 Sum_probs=48.2
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCC-CHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhC
Q 036466 75 TVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDS-GKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLN 153 (727)
Q Consensus 75 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~-~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~ 153 (727)
..+++++.|++|+||||++..++..... ..-..+.+++..... ...+.+.......+.+.....+...+...+...
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~-~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~-- 180 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISML-EKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELF-- 180 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHH-TTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHG--
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH-hcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHh--
Confidence 3569999999999999999999974221 122245666654322 222333333333322221223344444444432
Q ss_pred CceEEEEEcCC
Q 036466 154 GKRYLLVMDDV 164 (727)
Q Consensus 154 ~~~~LlvlDd~ 164 (727)
.+.=++|+|-.
T Consensus 181 ~~~dlvIiDT~ 191 (296)
T 2px0_A 181 SEYDHVFVDTA 191 (296)
T ss_dssp GGSSEEEEECC
T ss_pred cCCCEEEEeCC
Confidence 44568889954
No 262
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.23 E-value=0.019 Score=58.33 Aligned_cols=56 Identities=16% Similarity=0.141 Sum_probs=38.0
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcchhhHh----cCCceEEEEecCCCCHHHHHHHHHHHh
Q 036466 75 TVSVIPIVGIGGLGKTALAKLLYNDQRVEE----HFELKIWICVSEDSGKRQIMTKIINSV 131 (727)
Q Consensus 75 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~----~f~~~~~~~~~~~~~~~~~~~~ll~~l 131 (727)
.-.++.|+|++|+||||++.+++....... .-..++|++....++...+. +++..+
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~ 180 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRF 180 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHc
Confidence 457999999999999999999887422211 23467899887765555443 334444
No 263
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.18 E-value=0.018 Score=55.34 Aligned_cols=39 Identities=23% Similarity=0.274 Sum_probs=29.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecC
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSE 116 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~ 116 (727)
-.+++|.|++|+||||++.+++.. ....-..++|++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~--~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWN--GLKMGEPGIYVALEE 61 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHH--HHHTTCCEEEEESSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEccC
Confidence 358999999999999999988874 223334677877544
No 264
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.13 E-value=0.024 Score=56.19 Aligned_cols=91 Identities=16% Similarity=0.161 Sum_probs=51.6
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCC-HHHHHHHHHHHhcCC---CCCCCChHH-HHHHH
Q 036466 74 ETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSG-KRQIMTKIINSVTGG---NHGNLDPDR-LQKVL 148 (727)
Q Consensus 74 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~-~~~~~~~ll~~l~~~---~~~~~~~~~-~~~~l 148 (727)
...++++|+|++|+||||++..++.. ....-..+.+++...... ..+-+..++...+.+ .....+... ..+.+
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~--l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al 179 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKM--FVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAV 179 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHH--HHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHH--HHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 45689999999999999999999974 333323455666543221 112223344444321 111223322 23445
Q ss_pred HHHhCCceEEEEEcCCCC
Q 036466 149 RDSLNGKRYLLVMDDVWN 166 (727)
Q Consensus 149 ~~~l~~~~~LlvlDd~~~ 166 (727)
...+..++=++|+|..-.
T Consensus 180 ~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 180 AHALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHHHTTCSEEEEEECCC
T ss_pred HHHHhcCCCEEEEECCCc
Confidence 555555666888898744
No 265
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.12 E-value=0.0097 Score=55.31 Aligned_cols=43 Identities=21% Similarity=0.195 Sum_probs=34.2
Q ss_pred ecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhc
Q 036466 53 GRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 53 Gr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
.|++.++.|.+.+.... .....+++|.|++|+||||+++.+..
T Consensus 2 ~~~~~~~~l~~~~~~~~---~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIK---TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp CHHHHHHHHHHHHHTSC---CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhc---cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 46677888888876532 23467999999999999999998886
No 266
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.06 E-value=0.013 Score=59.10 Aligned_cols=56 Identities=20% Similarity=0.211 Sum_probs=37.7
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcchhhHh---------cC-----CceEEEEecCCCCHHHHHHHHHHHh
Q 036466 75 TVSVIPIVGIGGLGKTALAKLLYNDQRVEE---------HF-----ELKIWICVSEDSGKRQIMTKIINSV 131 (727)
Q Consensus 75 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~---------~f-----~~~~~~~~~~~~~~~~~~~~ll~~l 131 (727)
.-.++.|+|++|+|||++|.+++....... .. ..++|++....++...+.+ ++..+
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~ 166 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHA 166 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHc
Confidence 346999999999999999999986422211 11 3577988877655555443 34444
No 267
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.99 E-value=0.016 Score=61.61 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 036466 78 VIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 78 ~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
.++|.|.+|+|||+++..++..
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~ 68 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEA 68 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 8999999999999999998874
No 268
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.94 E-value=0.012 Score=59.75 Aligned_cols=92 Identities=20% Similarity=0.197 Sum_probs=51.1
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcchhhHhcC----CceEEEEecCCCCHHHHHHHHHHHhcCCC---------CCCCC-
Q 036466 75 TVSVIPIVGIGGLGKTALAKLLYNDQRVEEHF----ELKIWICVSEDSGKRQIMTKIINSVTGGN---------HGNLD- 140 (727)
Q Consensus 75 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f----~~~~~~~~~~~~~~~~~~~~ll~~l~~~~---------~~~~~- 140 (727)
.-+++.|+|++|+|||||++.++......... ..++|++......... +..++....... ....+
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~-i~~i~q~~~~~~~~v~~ni~~~~~~~~ 208 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRGLDPDEVLKHIYVARAFNS 208 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHH-HHHHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHH-HHHHHHHcCCCHHHHhhCEEEEecCCh
Confidence 45799999999999999999998742111111 2347888755432222 223333321100 00111
Q ss_pred --hHHHHHHHHHHhC------CceEEEEEcCCCCC
Q 036466 141 --PDRLQKVLRDSLN------GKRYLLVMDDVWNE 167 (727)
Q Consensus 141 --~~~~~~~l~~~l~------~~~~LlvlDd~~~~ 167 (727)
..++...+...+. .++=+||+|.+...
T Consensus 209 ~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ 243 (349)
T 1pzn_A 209 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH 243 (349)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTT
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHh
Confidence 1223344444443 46789999998543
No 269
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.87 E-value=0.068 Score=55.19 Aligned_cols=129 Identities=11% Similarity=-0.003 Sum_probs=61.4
Q ss_pred ccCCCCCCEeecCCCCCCcccChhhcccccCceeEecccccccccccCCCCCCCcEEeccccCCchhhh-hhccCCCCcC
Q 036466 473 ICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTKQKSLLESGIGCLSSLRFLMISNCGNLEYLF-EDIDQLSVLR 551 (727)
Q Consensus 473 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~-~~l~~l~~L~ 551 (727)
+..+.+|+.+.+.. .....-...+.++.+|+.+.+..+-.......+..+.+|+.+.+.. .+..++ .++..|.+|+
T Consensus 213 f~~~~~l~~i~~~~-~~~~i~~~~f~~~~~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~aF~~c~~L~ 289 (379)
T 4h09_A 213 FSYGKNLKKITITS-GVTTLGDGAFYGMKALDEIAIPKNVTSIGSFLLQNCTALKTLNFYA--KVKTVPYLLCSGCSNLT 289 (379)
T ss_dssp TTTCSSCSEEECCT-TCCEECTTTTTTCSSCCEEEECTTCCEECTTTTTTCTTCCEEEECC--CCSEECTTTTTTCTTCC
T ss_pred cccccccceeeecc-ceeEEccccccCCccceEEEcCCCccEeCccccceeehhccccccc--cceeccccccccccccc
Confidence 44455566665543 1111222344555666666665442222223445556666666543 222222 3455666666
Q ss_pred eeecccCcCCCcCccccccCcccceeeccccccccccccccccccCCCCCCCCCCceeeEEEecC
Q 036466 552 SLVVNACPRLNLLPPAMKYLSSLERLIFDECESLSLSLNMEMKEEGSHHDRKNVGSHLRTLYVAR 616 (727)
Q Consensus 552 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~ 616 (727)
.+.+.++.....-..++.+|.+|+++.+... ++.. + ...+.+|.+|+++.+..
T Consensus 290 ~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~--l~~I--------~--~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 290 KVVMDNSAIETLEPRVFMDCVKLSSVTLPTA--LKTI--------Q--VYAFKNCKALSTISYPK 342 (379)
T ss_dssp EEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEE--------C--TTTTTTCTTCCCCCCCT
T ss_pred cccccccccceehhhhhcCCCCCCEEEcCcc--ccEE--------H--HHHhhCCCCCCEEEECC
Confidence 6666543322112244556666666666432 1111 0 23455666666666643
No 270
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.82 E-value=0.00084 Score=76.61 Aligned_cols=163 Identities=16% Similarity=0.078 Sum_probs=83.0
Q ss_pred CCCCceeecchhHHHHHHHHhcCCC-------CCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCC
Q 036466 46 VRPSDIIGRYEDGEKIIELLTQTSD-------GESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDS 118 (727)
Q Consensus 46 ~~~~~~vGr~~~~~~l~~~l~~~~~-------~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~ 118 (727)
..-.+++|.++..+.|.+++..+.. ..-...+.++++|++|+|||+||+.++.. ....|- .++.....
T Consensus 474 v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~--~~~~~i---~v~~~~l~ 548 (806)
T 1ypw_A 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQANFI---SIKGPELL 548 (806)
T ss_dssp CSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHH--HTCCCC---CCCCSSST
T ss_pred ccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHH--hCCCEE---EEechHhh
Confidence 3445678999988888877653211 00123457899999999999999999973 333221 11111100
Q ss_pred CHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCC----------hhhHHHHHHhhcC------C
Q 036466 119 GKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNED----------PRAWGELKSLLLG------G 182 (727)
Q Consensus 119 ~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~----------~~~~~~~~~~l~~------~ 182 (727)
..+.......+...+...-...+.+++||+++... ......+...+.. .
T Consensus 549 ---------------~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~ 613 (806)
T 1ypw_A 549 ---------------TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST 613 (806)
T ss_dssp ---------------TCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC----
T ss_pred ---------------hhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccc
Confidence 11111222222233333323356799999985410 0111222222221 1
Q ss_pred CCCCEEEEecCchH-HHHHHhh-cCCCCceecCCCChhhHHHHHHHhh
Q 036466 183 AEGSKILVTTRSNK-VALIMAT-MRGTTGYNLQELPYKDCLSLFMKCA 228 (727)
Q Consensus 183 ~~~~~iliTsr~~~-~~~~~~~-~~~~~~~~l~~l~~~~~~~l~~~~~ 228 (727)
..+..||.||.... +...... .+....+.++..+.++..++++...
T Consensus 614 ~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l 661 (806)
T 1ypw_A 614 KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp --CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTT
T ss_pred cCCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHh
Confidence 22344555554332 1111111 0122567788888888888887655
No 271
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.81 E-value=0.077 Score=55.11 Aligned_cols=39 Identities=23% Similarity=0.265 Sum_probs=28.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEec
Q 036466 75 TVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVS 115 (727)
Q Consensus 75 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~ 115 (727)
++++|+++|.+|+||||++.+++.. ....-..++.+++.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~--l~~~G~kVllv~~D 137 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARY--FQKRGYKVGVVCSD 137 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEEECC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHH--HHHCCCeEEEEeCC
Confidence 4789999999999999999999874 33332344555543
No 272
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=95.77 E-value=0.042 Score=56.77 Aligned_cols=130 Identities=18% Similarity=0.187 Sum_probs=71.7
Q ss_pred ceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHH
Q 036466 50 DIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIIN 129 (727)
Q Consensus 50 ~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~ 129 (727)
.++|....++++.+.+...... ...|.|+|.+|+|||++|+.+..... ......+-++|... ..+++..
T Consensus 138 ~~ig~s~~m~~l~~~i~~~a~~----~~~vli~Ge~GtGK~~lAr~ih~~s~--r~~~~fv~v~~~~~--~~~~~~~--- 206 (387)
T 1ny5_A 138 EYVFESPKMKEILEKIKKISCA----ECPVLITGESGVGKEVVARLIHKLSD--RSKEPFVALNVASI--PRDIFEA--- 206 (387)
T ss_dssp CCCCCSHHHHHHHHHHHHHTTC----CSCEEEECSTTSSHHHHHHHHHHHST--TTTSCEEEEETTTS--CHHHHHH---
T ss_pred hhhhccHHhhHHHHHHHHhcCC----CCCeEEecCCCcCHHHHHHHHHHhcC--CCCCCeEEEecCCC--CHHHHHH---
Confidence 5788888888888777654321 22469999999999999998876311 11112234455442 2233322
Q ss_pred HhcCCCC---CCCChHHHHHHHHHHhCCceEEEEEcCCCCCChhhHHHHHHhhcCC------C-----CCCEEEEecCc
Q 036466 130 SVTGGNH---GNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLGG------A-----EGSKILVTTRS 194 (727)
Q Consensus 130 ~l~~~~~---~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~------~-----~~~~iliTsr~ 194 (727)
.+.+... .+... .....+.. ...-.|+||+++.........+...+... + ...+||.+|..
T Consensus 207 elfg~~~g~~tga~~-~~~g~~~~---a~~gtlfldei~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~ 281 (387)
T 1ny5_A 207 ELFGYEKGAFTGAVS-SKEGFFEL---ADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNR 281 (387)
T ss_dssp HHHCBCTTSSTTCCS-CBCCHHHH---TTTSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESS
T ss_pred HhcCCCCCCCCCccc-ccCCceee---CCCcEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCC
Confidence 2222110 00000 00011111 12347789999988877777777766431 1 24678877764
No 273
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.75 E-value=0.0022 Score=58.63 Aligned_cols=107 Identities=20% Similarity=0.143 Sum_probs=51.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhcCC--CCCCCChHHHHHHHHHHhCC
Q 036466 77 SVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVTGG--NHGNLDPDRLQKVLRDSLNG 154 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~~--~~~~~~~~~~~~~l~~~l~~ 154 (727)
.+++++|+.|+||||++.+++.+...++ ..++++...... ..-...+...++.. .....+.. .+.+.+.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g--~~v~~~~~~~d~--r~~~~~i~s~~g~~~~~~~~~~~~----~~~~~~~~ 75 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGK--KKVAVFKPKIDS--RYHSTMIVSHSGNGVEAHVIERPE----EMRKYIEE 75 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTT--CEEEEEEEC-------CCCEECC----CEECEEESSGG----GGGGGCCT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEeecccc--ccCcccEEecCCCceeeEEECCHH----HHHHHhcC
Confidence 4788999999999999977776432222 223333322110 00000000001000 00001111 12222234
Q ss_pred ceEEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEEecCc
Q 036466 155 KRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRS 194 (727)
Q Consensus 155 ~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~iliTsr~ 194 (727)
+.-+|++|+++..+. +|......+.+. +..|++|.+.
T Consensus 76 ~~dvviIDE~Q~~~~-~~~~~l~~l~~~--~~~Vi~~Gl~ 112 (184)
T 2orw_A 76 DTRGVFIDEVQFFNP-SLFEVVKDLLDR--GIDVFCAGLD 112 (184)
T ss_dssp TEEEEEECCGGGSCT-THHHHHHHHHHT--TCEEEEEEES
T ss_pred CCCEEEEECcccCCH-HHHHHHHHHHHC--CCCEEEEeec
Confidence 566999999977643 344444434332 7778888764
No 274
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.74 E-value=0.0072 Score=56.56 Aligned_cols=40 Identities=20% Similarity=0.291 Sum_probs=29.5
Q ss_pred hhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcc
Q 036466 56 EDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 56 ~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
+.+++|.+.+... ..+..+++|.|++|+|||||++.+...
T Consensus 6 ~~~~~~~~~~~~~----~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 6 ALCQGVLERLDPR----QPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp HHHHHHHHHSCTT----CCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc----CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3455565555432 245679999999999999999998873
No 275
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.72 E-value=0.081 Score=52.89 Aligned_cols=52 Identities=17% Similarity=0.245 Sum_probs=38.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHh
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSV 131 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l 131 (727)
-.++.|.|.+|+||||++.+++.+...++ ..++|++.. .+..++...++...
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~~ 119 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVTA 119 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHHH
Confidence 35899999999999999999987533222 567787765 35677777776553
No 276
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.71 E-value=0.039 Score=55.33 Aligned_cols=52 Identities=13% Similarity=0.059 Sum_probs=37.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHh
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSV 131 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l 131 (727)
-.++.|.|.+|+||||+|..++..... .-..++|++.. -+..++...++...
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSlE--ms~~ql~~Rlls~~ 97 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSLE--MSAEQLALRALSDL 97 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEESS--SCHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeCC--CCHHHHHHHHHHHh
Confidence 358999999999999999999985322 22456677653 35677777776554
No 277
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.70 E-value=0.008 Score=64.03 Aligned_cols=42 Identities=14% Similarity=0.125 Sum_probs=36.1
Q ss_pred ceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcc
Q 036466 50 DIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 50 ~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
.++|+++.++.+...+... ..|.|+|++|+|||+||+.++..
T Consensus 23 ~ivGq~~~i~~l~~al~~~--------~~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT--------CEEEEECCSSSSHHHHHHHGGGG
T ss_pred hhHHHHHHHHHHHHHHhcC--------CeeEeecCchHHHHHHHHHHHHH
Confidence 4889999999988887652 36899999999999999999974
No 278
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.67 E-value=0.016 Score=58.47 Aligned_cols=50 Identities=16% Similarity=0.170 Sum_probs=32.1
Q ss_pred HHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcC-Cc-eEEEEecCC
Q 036466 61 IIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHF-EL-KIWICVSED 117 (727)
Q Consensus 61 l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f-~~-~~~~~~~~~ 117 (727)
.++.+.... .-..++|+|++|+|||||++.+++. ..... +. .+|+-+++.
T Consensus 164 aID~~~pi~-----rGQr~~IvG~sG~GKTtLl~~Iar~--i~~~~~~v~~I~~lIGER 215 (422)
T 3ice_A 164 VLDLASPIG-----RGQRGLIVAPPKAGKTMLLQNIAQS--IAYNHPDCVLMVLLIDER 215 (422)
T ss_dssp HHHHHSCCB-----TTCEEEEECCSSSSHHHHHHHHHHH--HHHHCTTSEEEEEEESSC
T ss_pred eeeeeeeec-----CCcEEEEecCCCCChhHHHHHHHHH--HhhcCCCeeEEEEEecCC
Confidence 445555542 2347999999999999999998873 32222 22 346666644
No 279
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.66 E-value=0.012 Score=53.77 Aligned_cols=117 Identities=15% Similarity=0.101 Sum_probs=54.3
Q ss_pred hhhhhcCCCcceEEEecCC-Cccc-----cccccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccCh
Q 036466 422 VTSCISKSKSLRVLVLTNS-AIEV-----LPRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPK 495 (727)
Q Consensus 422 ~~~~~~~~~~L~~L~l~~~-~~~~-----l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 495 (727)
+...+.+-+.|+.|+|+++ .+.. +...+....+|+.|+|++|.+...... .+..
T Consensus 33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~--------------------alA~ 92 (197)
T 1pgv_A 33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEAR--------------------GLIE 92 (197)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHT--------------------THHH
T ss_pred HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHH--------------------HHHH
Confidence 3444555666777777664 4431 223344445555555555543221111 1222
Q ss_pred hhcccccCceeEecccccc-----cccccCCCCCCCcEEeccccC--Cch-----hhhhhccCCCCcCeeecccC
Q 036466 496 DIRYLVSLRMFVVTTKQKS-----LLESGIGCLSSLRFLMISNCG--NLE-----YLFEDIDQLSVLRSLVVNAC 558 (727)
Q Consensus 496 ~l~~l~~L~~L~l~~~~~~-----~~~~~~~~l~~L~~L~l~~~~--~~~-----~l~~~l~~l~~L~~L~l~~~ 558 (727)
.+..-..|++|+|+.|.++ .+...+..-+.|++|+|++|. .+. .+...+..-+.|+.|+++.|
T Consensus 93 aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 93 LIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 3333344555555555444 122233444456666665432 122 23444555566777766544
No 280
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.65 E-value=0.022 Score=57.89 Aligned_cols=111 Identities=14% Similarity=0.123 Sum_probs=60.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceE-EEEecCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCc
Q 036466 77 SVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKI-WICVSEDSGKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGK 155 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~-~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~ 155 (727)
..++|.|+.|+||||+.+.+... ........+ .+...-...... ....+.+. ....+.....+.+...+...
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~--~~~~~~~~i~t~ed~~e~~~~~-~~~~v~q~----~~~~~~~~~~~~La~aL~~~ 196 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDY--LNNTKYHHILTIEDPIEFVHES-KKCLVNQR----EVHRDTLGFSEALRSALRED 196 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH--HHHHCCCEEEEEESSCCSCCCC-SSSEEEEE----EBTTTBSCHHHHHHHHTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHHhc--ccCCCCcEEEEccCcHHhhhhc-cccceeee----eeccccCCHHHHHHHHhhhC
Confidence 48999999999999999988873 332222222 222111000000 00000000 01111223455888889999
Q ss_pred eEEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEEecCchHHHH
Q 036466 156 RYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNKVAL 199 (727)
Q Consensus 156 ~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~iliTsr~~~~~~ 199 (727)
+=+|++|+.- +...+..+..... .|..|++|+...+...
T Consensus 197 PdvillDEp~--d~e~~~~~~~~~~---~G~~vl~t~H~~~~~~ 235 (356)
T 3jvv_A 197 PDIILVGEMR--DLETIRLALTAAE---TGHLVFGTLHTTSAAK 235 (356)
T ss_dssp CSEEEESCCC--SHHHHHHHHHHHH---TTCEEEEEESCSSHHH
T ss_pred cCEEecCCCC--CHHHHHHHHHHHh---cCCEEEEEEccChHHH
Confidence 9999999995 3333333333322 3666888888765543
No 281
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.64 E-value=0.026 Score=56.21 Aligned_cols=45 Identities=16% Similarity=0.204 Sum_probs=31.1
Q ss_pred eecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhc
Q 036466 52 IGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 52 vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
+|-...+..+...+.... ....+.+++|.|++|+||||+++.+..
T Consensus 70 ~~~~~~l~~~~~~~l~~~--~~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKP--EPKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHHHHHHHTCC--CCCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhccC--CCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 444445555554444422 124577999999999999999998876
No 282
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.64 E-value=0.0052 Score=55.86 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 036466 77 SVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
.+|+|.|++|+||||+++.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999886
No 283
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.62 E-value=0.0075 Score=62.06 Aligned_cols=50 Identities=26% Similarity=0.276 Sum_probs=36.6
Q ss_pred ceeecchhHHHHHHHHhcC-------C--CCCCCCeEEEEEEcCCCCcHHHHHHHHhcc
Q 036466 50 DIIGRYEDGEKIIELLTQT-------S--DGESETVSVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 50 ~~vGr~~~~~~l~~~l~~~-------~--~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
.++|.+..++.+..++... . .......+.+.++|++|+|||++|+.++..
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999988887310 0 001123467999999999999999999873
No 284
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.58 E-value=0.066 Score=55.58 Aligned_cols=90 Identities=17% Similarity=0.090 Sum_probs=48.8
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCC-HHHHHHHHHHHhcCCC---CCCCChHHHH-HHHH
Q 036466 75 TVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSG-KRQIMTKIINSVTGGN---HGNLDPDRLQ-KVLR 149 (727)
Q Consensus 75 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~-~~~~~~~ll~~l~~~~---~~~~~~~~~~-~~l~ 149 (727)
++++++++|++|+||||++..++.. .+..-..+..+++..... ..+.+.......+.+. ....++.... ..+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~--l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~ 173 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF--YKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVD 173 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH--HHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHH
Confidence 4789999999999999999999974 333333455666543321 1222333333333211 1122333332 3333
Q ss_pred HHhCCceEEEEEcCCCC
Q 036466 150 DSLNGKRYLLVMDDVWN 166 (727)
Q Consensus 150 ~~l~~~~~LlvlDd~~~ 166 (727)
.......=++|+|-...
T Consensus 174 ~a~~~~~DvvIIDTaGr 190 (433)
T 3kl4_A 174 IFVKNKMDIIIVDTAGR 190 (433)
T ss_dssp HTTTTTCSEEEEEECCC
T ss_pred HHHhcCCCEEEEECCCC
Confidence 33333445667887753
No 285
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.51 E-value=0.0065 Score=55.55 Aligned_cols=111 Identities=17% Similarity=0.103 Sum_probs=71.4
Q ss_pred CCeeEEEeccC-CCc-chhhhhhhhhcCCCcceEEEecCCCccc-----cccccCCCCcCcEEeccCCccccc----cCc
Q 036466 403 GRVRTILFPID-DER-TSQSFVTSCISKSKSLRVLVLTNSAIEV-----LPRKMGNLKQLRHLDLSGNRKIKK----LPN 471 (727)
Q Consensus 403 ~~~~~l~~~~~-~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~-----l~~~~~~l~~L~~L~l~~~~~~~~----~~~ 471 (727)
..++.+.+... .-+ .+...+...++.-+.|+.|+|++|.+.. +...+.....|+.|+|++|.+... +..
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~ 120 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 120 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence 45677777532 222 3445567788888999999999999873 333455678899999999985432 333
Q ss_pred cccCCCCCCEeecCCCCC--Cc-----ccChhhcccccCceeEeccccc
Q 036466 472 SICELQSLQTLNLGDCLE--LE-----ELPKDIRYLVSLRMFVVTTKQK 513 (727)
Q Consensus 472 ~~~~l~~L~~L~l~~~~~--~~-----~~~~~l~~l~~L~~L~l~~~~~ 513 (727)
.+..-+.|++|+|++|.. ++ .+...+..-+.|+.|++..+.+
T Consensus 121 aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 121 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 454556689999976422 22 1334455555666666655443
No 286
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.48 E-value=0.0047 Score=63.25 Aligned_cols=47 Identities=17% Similarity=0.189 Sum_probs=34.1
Q ss_pred CCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcc
Q 036466 47 RPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 47 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
.-..++|.+...+.+....... ....+.|+|++|+|||++|+.++..
T Consensus 22 ~f~~i~G~~~~~~~l~~~~~~~------~~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 22 PFSAIVGQEDMKLALLLTAVDP------GIGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp CGGGSCSCHHHHHHHHHHHHCG------GGCCEEEECCGGGCTTHHHHHHHHH
T ss_pred CchhccChHHHHHHHHHHhhCC------CCceEEEECCCCccHHHHHHHHHHh
Confidence 3356899998766655544331 1224999999999999999999873
No 287
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.48 E-value=0.051 Score=54.46 Aligned_cols=57 Identities=23% Similarity=0.187 Sum_probs=34.9
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCC-CCHHHHHHHHHHHhc
Q 036466 74 ETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSED-SGKRQIMTKIINSVT 132 (727)
Q Consensus 74 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~-~~~~~~~~~ll~~l~ 132 (727)
.+..+++|.|+.|+||||+++.++.. .+..-..+.+....-. ....+-+..+.+.++
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~--l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~g 184 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANW--LKNHGFSVVIAASDTFRAGAIEQLEEHAKRIG 184 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHH--HHHTTCCEEEEEECCSSTTHHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCEEEEEeecccccchHHHHHHHHHHcC
Confidence 35689999999999999999999973 3333233445443322 123333444444443
No 288
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.45 E-value=0.0074 Score=54.94 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 036466 77 SVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
.+|+|.|++|+||||+|+++..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999886
No 289
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.45 E-value=0.011 Score=58.37 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=23.2
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHhcc
Q 036466 74 ETVSVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 74 ~~~~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
....+|+|.|++|+|||||++.+...
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999988874
No 290
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.34 E-value=0.0072 Score=54.51 Aligned_cols=21 Identities=24% Similarity=0.151 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 036466 78 VIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 78 ~v~i~G~~GiGKTtLa~~~~~ 98 (727)
+|+|.|++|+||||+++.++.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998886
No 291
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.34 E-value=0.037 Score=57.07 Aligned_cols=55 Identities=15% Similarity=0.072 Sum_probs=34.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcchhhHh----cCCceEEEEecCCCCHHHHHHHHHHHh
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYNDQRVEE----HFELKIWICVSEDSGKRQIMTKIINSV 131 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~----~f~~~~~~~~~~~~~~~~~~~~ll~~l 131 (727)
-.++.|.|++|+|||||++.++....... .-..++|++......... +.++++.+
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~r-l~~~a~~~ 236 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVR-LVSIAQRF 236 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHH-HHHHHHHT
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHH-HHHHHHHc
Confidence 35899999999999999997764211111 234578887765444433 33345544
No 292
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.30 E-value=0.04 Score=51.11 Aligned_cols=21 Identities=33% Similarity=0.452 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 036466 78 VIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 78 ~v~i~G~~GiGKTtLa~~~~~ 98 (727)
+++|.|+||+||+|.|+.++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478899999999999998886
No 293
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.26 E-value=0.0095 Score=54.26 Aligned_cols=23 Identities=17% Similarity=0.443 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
.++++|.|++|+|||||++.+..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999999886
No 294
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.24 E-value=0.01 Score=54.53 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
..+++|.|++|+||||+++.++.
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999987
No 295
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.22 E-value=0.012 Score=53.81 Aligned_cols=41 Identities=12% Similarity=0.072 Sum_probs=30.4
Q ss_pred ecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhc
Q 036466 53 GRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 53 Gr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
....-+..+..++... ++...++|+|++|+|||++|..+++
T Consensus 40 ~~~~f~~~l~~~~~~i-----Pkkn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 40 EFITFLGALKSFLKGT-----PKKNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp CHHHHHHHHHHHHHTC-----TTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-----CcccEEEEECCCCCCHHHHHHHHHH
Confidence 3444566677777542 2345799999999999999988887
No 296
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.19 E-value=0.0098 Score=53.81 Aligned_cols=19 Identities=58% Similarity=0.842 Sum_probs=18.1
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q 036466 78 VIPIVGIGGLGKTALAKLL 96 (727)
Q Consensus 78 ~v~i~G~~GiGKTtLa~~~ 96 (727)
+|+|.|++|+||||+|+.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999988
No 297
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.17 E-value=0.013 Score=54.50 Aligned_cols=25 Identities=36% Similarity=0.418 Sum_probs=22.4
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcc
Q 036466 75 TVSVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 75 ~~~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
+..+++|.|++|+||||+++.++..
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999874
No 298
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.15 E-value=0.0082 Score=54.62 Aligned_cols=22 Identities=41% Similarity=0.569 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 036466 77 SVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
|.|+|.|++|+|||||++++..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999998876
No 299
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=95.09 E-value=0.064 Score=54.95 Aligned_cols=163 Identities=18% Similarity=0.157 Sum_probs=84.6
Q ss_pred CceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHH
Q 036466 49 SDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKII 128 (727)
Q Consensus 49 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll 128 (727)
..++|....+.++.+.+..... ....|.|+|.+|+||+++|+.+.... ..-...+-++|.... .+++..-+
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~----~~~~vli~GesGtGKe~lAr~ih~~s---~r~~~fv~vnc~~~~--~~~~~~~l 199 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAK----SKAPVLITGESGTGKEIVARLIHRYS---GRKGAFVDLNCASIP--QELAESEL 199 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHT----SCSCEEEECCTTSSHHHHHHHHHHHH---CCCSCEEEEESSSSC--TTTHHHHH
T ss_pred ccccccchHHHHHHhhhhhhhc----cchhheEEeCCCchHHHHHHHHHHhc---cccCCcEEEEcccCC--hHHHHHHh
Confidence 4688988888777776644321 12348899999999999999887632 221223344555432 22222222
Q ss_pred H-HhcCCCCCC-CChHHHHHHHHHHhCCceEEEEEcCCCCCChhhHHHHHHhhcCC------C-----CCCEEEEecCch
Q 036466 129 N-SVTGGNHGN-LDPDRLQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLGG------A-----EGSKILVTTRSN 195 (727)
Q Consensus 129 ~-~l~~~~~~~-~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~------~-----~~~~iliTsr~~ 195 (727)
- .-.+..... ..-. ..+... ..-.|+||++++........+...+... + -..++|.+|...
T Consensus 200 fg~~~g~~tga~~~~~---g~~~~a---~~gtlfldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~ 273 (368)
T 3dzd_A 200 FGHEKGAFTGALTRKK---GKLELA---DQGTLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKN 273 (368)
T ss_dssp HEECSCSSSSCCCCEE---CHHHHT---TTSEEEEETGGGSCHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSC
T ss_pred cCccccccCCcccccC---ChHhhc---CCCeEEecChhhCCHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCC
Confidence 1 111111000 0111 112111 2236899999998877777777777532 1 145677766543
Q ss_pred HHHHHHh--------hcCCCCceecCCCCh--hhHHHHHHH
Q 036466 196 KVALIMA--------TMRGTTGYNLQELPY--KDCLSLFMK 226 (727)
Q Consensus 196 ~~~~~~~--------~~~~~~~~~l~~l~~--~~~~~l~~~ 226 (727)
....... ..-....+.+++|.+ +|...++..
T Consensus 274 l~~~v~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~ 314 (368)
T 3dzd_A 274 LEEEIKKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEY 314 (368)
T ss_dssp HHHHHHTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHH
T ss_pred HHHHHHcCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHH
Confidence 2211100 000113577888877 565554433
No 300
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.07 E-value=0.012 Score=54.18 Aligned_cols=24 Identities=33% Similarity=0.427 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhc
Q 036466 75 TVSVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 75 ~~~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
....|+|.|++|+||||+++.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999886
No 301
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.04 E-value=0.011 Score=54.74 Aligned_cols=23 Identities=35% Similarity=0.420 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
.+.|+|.|++|+||||+++.++.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 35899999999999999999986
No 302
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.02 E-value=0.02 Score=56.38 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=22.3
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHhc
Q 036466 74 ETVSVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 74 ~~~~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
..+.+++|.|++|+||||+|+.+..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999999876
No 303
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.99 E-value=0.011 Score=54.12 Aligned_cols=23 Identities=30% Similarity=0.522 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
.+.|+|.|++|+||||+++.++.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999986
No 304
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.98 E-value=0.028 Score=51.33 Aligned_cols=26 Identities=35% Similarity=0.401 Sum_probs=22.7
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHhcc
Q 036466 74 ETVSVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 74 ~~~~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
.....++|.|++|+||||+++.++..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999874
No 305
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.97 E-value=0.013 Score=54.88 Aligned_cols=24 Identities=25% Similarity=0.502 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcc
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
.++++|.|++|+|||||++.++..
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 468999999999999999998863
No 306
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.97 E-value=0.0098 Score=53.68 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 036466 77 SVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
.+|+|.|++|+||||+++.++.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998876
No 307
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.96 E-value=0.041 Score=57.37 Aligned_cols=50 Identities=24% Similarity=0.360 Sum_probs=31.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCC-CHHHHHHHHH
Q 036466 78 VIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDS-GKRQIMTKII 128 (727)
Q Consensus 78 ~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~-~~~~~~~~ll 128 (727)
.++|+|.+|+|||||+..++.....+ ..+..+++.+++.. ...++..++.
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~~~-~~~i~V~~~iGerttev~el~~~l~ 203 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIAQE-HGGISVFAGVGERTREGNDLYHEMK 203 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHHH-TCCCEEEEEESSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhhhhc-cCcEEEEeeeccCchHHHHHHHHhh
Confidence 58999999999999999998742222 22344566665543 2234444443
No 308
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.93 E-value=0.023 Score=52.16 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 036466 77 SVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
..|+|.|++|+||||+++.++..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999873
No 309
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.92 E-value=0.073 Score=52.55 Aligned_cols=88 Identities=16% Similarity=0.152 Sum_probs=48.1
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHH-HHHHHHHHHhcCCCC---CCCChHHHH-HHHH
Q 036466 75 TVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKR-QIMTKIINSVTGGNH---GNLDPDRLQ-KVLR 149 (727)
Q Consensus 75 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~-~~~~~ll~~l~~~~~---~~~~~~~~~-~~l~ 149 (727)
..++++++|.+|+||||++..++.. ....-..+.+++........ ..+..+....+.... ...++.++. ..+.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~--~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~ 174 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALY--YKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEE 174 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHH--HHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHH
Confidence 4678999999999999999999973 33333345566554322211 112233343332111 123444443 3344
Q ss_pred HHhCCceEEEEEcCC
Q 036466 150 DSLNGKRYLLVMDDV 164 (727)
Q Consensus 150 ~~l~~~~~LlvlDd~ 164 (727)
.....+.=++|+|.-
T Consensus 175 ~~~~~~~D~viiDtp 189 (295)
T 1ls1_A 175 KARLEARDLILVDTA 189 (295)
T ss_dssp HHHHHTCCEEEEECC
T ss_pred HHHhCCCCEEEEeCC
Confidence 433234457888976
No 310
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.89 E-value=0.019 Score=51.90 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhc
Q 036466 75 TVSVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 75 ~~~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
...+++|.|++|+||||+++.++.
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 346899999999999999998876
No 311
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.85 E-value=0.068 Score=53.39 Aligned_cols=40 Identities=20% Similarity=0.215 Sum_probs=29.9
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEec
Q 036466 74 ETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVS 115 (727)
Q Consensus 74 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~ 115 (727)
.+.++++|+|++|+||||++..++.. ....-..+.+++..
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~--l~~~g~kVllid~D 142 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANY--YAELGYKVLIAAAD 142 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHH--HHHTTCCEEEEECC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEeCC
Confidence 45789999999999999999999973 33333445666554
No 312
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.84 E-value=0.011 Score=54.16 Aligned_cols=22 Identities=41% Similarity=0.569 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 036466 77 SVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
++++|.|++|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999999886
No 313
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.82 E-value=0.012 Score=54.74 Aligned_cols=24 Identities=21% Similarity=0.487 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcc
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
..+|+|.|++|+||||+|+.++..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999988863
No 314
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.78 E-value=0.015 Score=54.03 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
..+++|.|++|+||||+++.++.
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998886
No 315
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.76 E-value=0.024 Score=54.82 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=22.5
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHhc
Q 036466 74 ETVSVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 74 ~~~~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
..+..++|.|++|+||||+|+.+..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999999876
No 316
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=94.72 E-value=0.036 Score=55.20 Aligned_cols=41 Identities=20% Similarity=0.214 Sum_probs=31.2
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecC
Q 036466 74 ETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSE 116 (727)
Q Consensus 74 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~ 116 (727)
++.|+|+|+|-|||||||.+..++. .....-..+.-+++..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~--aLA~~GkkVllID~Dp 86 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSA--AFSILGKRVLQIGCDP 86 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEEESS
T ss_pred CCceEEEEECCCccCHHHHHHHHHH--HHHHCCCeEEEEecCC
Confidence 4578999999999999999988887 3343334577778764
No 317
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.72 E-value=0.029 Score=68.79 Aligned_cols=84 Identities=13% Similarity=0.062 Sum_probs=54.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhcCCC-----CCCCChHHHHHHHH
Q 036466 75 TVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVTGGN-----HGNLDPDRLQKVLR 149 (727)
Q Consensus 75 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-----~~~~~~~~~~~~l~ 149 (727)
..+.+.|+|++|+|||+||.+++. ....+-..++|+++.+..+... ++.++..- ....+.++..+.++
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~--ea~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHH--HHHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 456899999999999999999987 3444434577888776655554 34443110 01223345555555
Q ss_pred HHhC-CceEEEEEcCCC
Q 036466 150 DSLN-GKRYLLVMDDVW 165 (727)
Q Consensus 150 ~~l~-~~~~LlvlDd~~ 165 (727)
+..+ .+.-+||+|.+.
T Consensus 1499 ~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHhcCCCCEEEEcChh
Confidence 5443 467899999994
No 318
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.72 E-value=0.029 Score=49.97 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcc
Q 036466 75 TVSVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 75 ~~~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
..++++|.|.+|+|||||+.+++..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3568999999999999999999873
No 319
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.70 E-value=0.016 Score=53.05 Aligned_cols=24 Identities=17% Similarity=0.493 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhc
Q 036466 75 TVSVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 75 ~~~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
..++++|.|++|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 456899999999999999999886
No 320
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.70 E-value=0.013 Score=54.48 Aligned_cols=24 Identities=25% Similarity=0.483 Sum_probs=21.4
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhc
Q 036466 75 TVSVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 75 ~~~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
..++++|.|++|+||||+++.+..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999886
No 321
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.68 E-value=0.014 Score=53.56 Aligned_cols=23 Identities=26% Similarity=0.605 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 036466 77 SVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
..|+|.|++|+||||+++.++..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999873
No 322
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.67 E-value=0.017 Score=53.31 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
+..|+|.|++|+||||+|+.++.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998876
No 323
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.67 E-value=0.017 Score=53.82 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 036466 77 SVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
.+++|.|++|+|||||++.++.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHh
Confidence 5899999999999999998876
No 324
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.66 E-value=0.018 Score=52.64 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
...|+|+|++|+||||+++.++.
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998876
No 325
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.65 E-value=0.047 Score=50.26 Aligned_cols=22 Identities=36% Similarity=0.504 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 036466 78 VIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 78 ~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
.|+|.|++|+||||+++.+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998873
No 326
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.65 E-value=0.017 Score=51.99 Aligned_cols=23 Identities=30% Similarity=0.639 Sum_probs=19.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
..+++|.|++|+|||||++.++.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 46899999999999999997553
No 327
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.65 E-value=0.022 Score=52.97 Aligned_cols=25 Identities=36% Similarity=0.450 Sum_probs=22.0
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHhc
Q 036466 74 ETVSVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 74 ~~~~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
.....|+|.|++|+||||+++.++.
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999998876
No 328
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.65 E-value=0.13 Score=54.39 Aligned_cols=51 Identities=16% Similarity=0.194 Sum_probs=35.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHH
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIIN 129 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~ 129 (727)
-.++.|.|.+|+||||++..++...... .-..++|++... +..++...++.
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~E~--s~~~l~~r~~~ 253 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSLEM--SAQQLVMRMLC 253 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEESSS--CHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECCC--CHHHHHHHHHH
Confidence 3589999999999999999999853222 223577776543 45566665543
No 329
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.63 E-value=0.019 Score=53.65 Aligned_cols=26 Identities=27% Similarity=0.325 Sum_probs=23.1
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHhcc
Q 036466 74 ETVSVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 74 ~~~~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
.++++|.|.|+||+||||.|+.++..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 56789999999999999999988863
No 330
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.62 E-value=0.024 Score=54.37 Aligned_cols=24 Identities=21% Similarity=0.144 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhc
Q 036466 75 TVSVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 75 ~~~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
.+..|+|.|++|+||||+|+.+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999998876
No 331
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.61 E-value=0.018 Score=55.62 Aligned_cols=22 Identities=27% Similarity=0.179 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 036466 77 SVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
++++|.|++|+||||+|+.++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 4789999999999999999986
No 332
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.60 E-value=0.12 Score=53.56 Aligned_cols=39 Identities=21% Similarity=0.175 Sum_probs=28.7
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEec
Q 036466 75 TVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVS 115 (727)
Q Consensus 75 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~ 115 (727)
+.+++++.|++|+||||++..++.. ....-..+..+++.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~--l~~~g~~Vllvd~D 135 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALY--YKGKGRRPLLVAAD 135 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEeecc
Confidence 4678999999999999999999974 33333345556553
No 333
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.59 E-value=0.015 Score=52.96 Aligned_cols=23 Identities=39% Similarity=0.548 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
.+.|+|+|++|+||||+++.++.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45799999999999999998886
No 334
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.59 E-value=0.031 Score=55.96 Aligned_cols=46 Identities=20% Similarity=0.331 Sum_probs=31.9
Q ss_pred eecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcc
Q 036466 52 IGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 52 vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
++-++.++.+.+.+..... ......++|.|++|+||||+++.++..
T Consensus 2 ~~~~~L~~~il~~l~~~i~--~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIE--DNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTT--TCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhc--cCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 4445556666666643221 134567999999999999999998873
No 335
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.58 E-value=0.02 Score=52.57 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 036466 77 SVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
.+++|.|++|+||||+++.++.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999874
No 336
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.57 E-value=0.14 Score=62.94 Aligned_cols=87 Identities=13% Similarity=0.055 Sum_probs=57.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhcCCCC-----CCCChHHHHHHHH
Q 036466 75 TVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVTGGNH-----GNLDPDRLQKVLR 149 (727)
Q Consensus 75 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-----~~~~~~~~~~~l~ 149 (727)
..+++.|+|++|+||||||.+++.. ....-..++|++.....+.. .++.++.... +..+.+++.+.++
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~--~a~~G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~I~~~~~~e~il~~~~ 454 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICD 454 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEECTTSCCCHH-----HHHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEEcCCCHHHH-----HHHHcCCCHHHeEEeCCCCHHHHHHHHH
Confidence 3469999999999999999999984 33333467888877655543 1445542211 2345666666666
Q ss_pred HHhC-CceEEEEEcCCCCCC
Q 036466 150 DSLN-GKRYLLVMDDVWNED 168 (727)
Q Consensus 150 ~~l~-~~~~LlvlDd~~~~~ 168 (727)
+..+ .+.-+||+|.+....
T Consensus 455 ~lv~~~~~~lIVIDSL~al~ 474 (2050)
T 3cmu_A 455 ALARSGAVDVIVVDSVAALT 474 (2050)
T ss_dssp HHHHHTCCSEEEESCGGGCC
T ss_pred HHHHhcCCcEEEECCHHHhh
Confidence 5443 456799999986543
No 337
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.52 E-value=0.015 Score=53.90 Aligned_cols=22 Identities=32% Similarity=0.554 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 036466 77 SVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
+.++|.|++|+|||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5799999999999999998876
No 338
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.51 E-value=0.021 Score=53.50 Aligned_cols=24 Identities=42% Similarity=0.369 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhc
Q 036466 75 TVSVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 75 ~~~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
+..+++|.|+.|+|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998886
No 339
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.51 E-value=0.02 Score=53.17 Aligned_cols=25 Identities=36% Similarity=0.446 Sum_probs=22.2
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHhc
Q 036466 74 ETVSVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 74 ~~~~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
....+|+|.|++|+||||+++.++.
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999998876
No 340
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.50 E-value=0.019 Score=53.43 Aligned_cols=24 Identities=29% Similarity=0.531 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcc
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
..+++|.|++|+||||+++.+...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 358999999999999999988763
No 341
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=94.49 E-value=0.04 Score=60.06 Aligned_cols=23 Identities=22% Similarity=0.328 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 036466 77 SVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
++++|+|++|+||||++..+...
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~ 227 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADL 227 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 48999999999999999998873
No 342
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.48 E-value=0.18 Score=52.61 Aligned_cols=59 Identities=14% Similarity=0.180 Sum_probs=37.7
Q ss_pred hHHHHHHHHhcCC---CCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhc-CCceEEEEecCC
Q 036466 57 DGEKIIELLTQTS---DGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEH-FELKIWICVSED 117 (727)
Q Consensus 57 ~~~~l~~~l~~~~---~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~-f~~~~~~~~~~~ 117 (727)
..+.|.+.+.... .....++++|+++|.+|+||||++..++.. .... -..+..+++...
T Consensus 78 ~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~--l~~~~G~kVllvd~D~~ 140 (433)
T 2xxa_A 78 VRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKF--LREKHKKKVLVVSADVY 140 (433)
T ss_dssp HHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHH--HHHTSCCCEEEEECCCS
T ss_pred HHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHH--HHHhcCCeEEEEecCCC
Confidence 3445555554321 111245789999999999999999999984 3333 335666666543
No 343
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.48 E-value=0.023 Score=53.04 Aligned_cols=24 Identities=42% Similarity=0.491 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhc
Q 036466 75 TVSVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 75 ~~~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
...+++|.|++|+||||+++.+..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998876
No 344
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.42 E-value=0.018 Score=53.06 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
...|+|.|++|+||||+++.++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998886
No 345
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.41 E-value=0.22 Score=52.26 Aligned_cols=52 Identities=17% Similarity=0.195 Sum_probs=36.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHh
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSV 131 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l 131 (727)
-.++.|.|.+|+||||+|.+++.+...+ -..++|++... +..++...++...
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEm--s~~ql~~R~~~~~ 248 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEM--GKKENIKRLIVTA 248 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSS--CTTHHHHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCC--CHHHHHHHHHHHH
Confidence 3589999999999999999999853332 23566776543 4556666665543
No 346
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.41 E-value=0.17 Score=49.89 Aligned_cols=90 Identities=17% Similarity=0.070 Sum_probs=50.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCH-HHHHHHHHHHhcCC---CCCCCChHHHHHHHHHH
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGK-RQIMTKIINSVTGG---NHGNLDPDRLQKVLRDS 151 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~-~~~~~~ll~~l~~~---~~~~~~~~~~~~~l~~~ 151 (727)
.+++++.|.+|+||||++..++.. ....-..+.+++....... .+.+..+....+.+ .....++.++.....+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~--~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~ 175 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYF--YKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 175 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHH--HHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHH
Confidence 679999999999999999999874 3333345667766543332 22333444444321 11223444443333333
Q ss_pred hC-CceEEEEEcCCCCC
Q 036466 152 LN-GKRYLLVMDDVWNE 167 (727)
Q Consensus 152 l~-~~~~LlvlDd~~~~ 167 (727)
++ ...=++|+|-.-..
T Consensus 176 ~~~~~~D~ViIDTpg~~ 192 (297)
T 1j8m_F 176 FLSEKMEIIIVDTAGRH 192 (297)
T ss_dssp HHHTTCSEEEEECCCSC
T ss_pred HHhCCCCEEEEeCCCCc
Confidence 33 33347888886433
No 347
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.40 E-value=0.062 Score=49.28 Aligned_cols=22 Identities=50% Similarity=0.684 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 036466 78 VIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 78 ~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
.|+|.|.+|+||||+++.+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 348
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.40 E-value=0.025 Score=51.66 Aligned_cols=23 Identities=26% Similarity=0.271 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
...|+|.|++|+||||+++.++.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999886
No 349
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=94.39 E-value=0.086 Score=55.03 Aligned_cols=63 Identities=24% Similarity=0.367 Sum_probs=41.3
Q ss_pred HHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCC-HHHHHHHHHH
Q 036466 61 IIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSG-KRQIMTKIIN 129 (727)
Q Consensus 61 l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~-~~~~~~~ll~ 129 (727)
.++.|.....+ ..++|+|.+|+|||+|+.+++++. .+.+-+..+|+-+++... ..++.+++..
T Consensus 155 vID~l~pigkG-----qr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~ 218 (498)
T 1fx0_B 155 VVNLLAPYRRG-----GKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKE 218 (498)
T ss_dssp THHHHSCCCTT-----CCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHH
T ss_pred EeeeecccccC-----CeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhc
Confidence 34555554322 358999999999999999998742 223346777887776543 3455555544
No 350
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.38 E-value=0.12 Score=54.43 Aligned_cols=53 Identities=17% Similarity=0.057 Sum_probs=37.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHh
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSV 131 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l 131 (727)
-.++.|.|.+|+||||++..++.+.... .-..++|++.. .+..++...++...
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~slE--~~~~~l~~R~~~~~ 252 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSLE--MPAAQLTLRMMCSE 252 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESS--SCHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEECC--CCHHHHHHHHHHHH
Confidence 3589999999999999999999853221 22357777664 34667777766544
No 351
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.35 E-value=0.38 Score=51.05 Aligned_cols=41 Identities=27% Similarity=0.265 Sum_probs=28.3
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecC
Q 036466 74 ETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSE 116 (727)
Q Consensus 74 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~ 116 (727)
..+++|+|+|.+|+||||++.+++... ...-..+..+++..
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l--~~~G~kVllVd~D~ 139 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYY--QRKGWKTCLICADT 139 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEEECC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH--HhCCCeEEEEeccc
Confidence 457899999999999999999999743 32223455666543
No 352
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.33 E-value=0.022 Score=55.03 Aligned_cols=25 Identities=16% Similarity=0.199 Sum_probs=21.8
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHhc
Q 036466 74 ETVSVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 74 ~~~~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
....+|+|.|++|+||||+|+.+..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999998876
No 353
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.33 E-value=0.021 Score=51.19 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
...|+|.|++|+||||+++.++.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998886
No 354
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.33 E-value=0.023 Score=53.23 Aligned_cols=24 Identities=38% Similarity=0.450 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcc
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
...|+|.|++|+||||+++.++..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 358999999999999999999874
No 355
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.32 E-value=0.023 Score=52.70 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhc
Q 036466 75 TVSVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 75 ~~~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
....|+|.|++|+||||+|+.+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 445899999999999999998886
No 356
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.28 E-value=0.027 Score=51.64 Aligned_cols=25 Identities=32% Similarity=0.465 Sum_probs=22.2
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHhc
Q 036466 74 ETVSVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 74 ~~~~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
....+|+|+|+.|+||||+++.+..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999998876
No 357
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.27 E-value=0.026 Score=52.61 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 036466 77 SVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
.+++|.|++|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998875
No 358
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.25 E-value=0.027 Score=51.69 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=21.4
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhc
Q 036466 75 TVSVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 75 ~~~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
....|+|.|++|+||||+++.++.
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999998876
No 359
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.25 E-value=0.039 Score=51.67 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcc
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
...|+|.|++|+||||+++.++..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999873
No 360
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=94.23 E-value=0.16 Score=52.78 Aligned_cols=63 Identities=24% Similarity=0.382 Sum_probs=40.3
Q ss_pred HHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCC-CHHHHHHHHHH
Q 036466 61 IIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDS-GKRQIMTKIIN 129 (727)
Q Consensus 61 l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~-~~~~~~~~ll~ 129 (727)
.++.+..... -..++|+|.+|+|||+|+.+++++. .+.+-+..+|+-+++.. ...++.+++..
T Consensus 143 ~ID~l~pigk-----GQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~ 206 (482)
T 2ck3_D 143 VVDLLAPYAK-----GGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIE 206 (482)
T ss_dssp HHHHHSCEET-----TCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHH
T ss_pred EEeccccccc-----CCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhh
Confidence 4455555422 2369999999999999999998742 12233556777777654 33455555554
No 361
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.22 E-value=0.18 Score=54.19 Aligned_cols=53 Identities=9% Similarity=-0.033 Sum_probs=37.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHh
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSV 131 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l 131 (727)
-.++.|.|.+|+||||++.+++.+...+ .-..++|++... +..++...++...
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E~--s~~~l~~r~~~~~ 294 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLEE--SVEETAEDLIGLH 294 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESSS--CHHHHHHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEeccC--CHHHHHHHHHHHH
Confidence 4589999999999999999999743222 123577877644 4667777776554
No 362
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.21 E-value=0.023 Score=51.36 Aligned_cols=21 Identities=38% Similarity=0.558 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 036466 78 VIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 78 ~v~i~G~~GiGKTtLa~~~~~ 98 (727)
.|+|.|++|+||||+|+.++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 363
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=94.20 E-value=0.026 Score=58.69 Aligned_cols=50 Identities=26% Similarity=0.358 Sum_probs=36.4
Q ss_pred CceeecchhHHHHHHHHhcC-------CC-CCCCCeEEEEEEcCCCCcHHHHHHHHhc
Q 036466 49 SDIIGRYEDGEKIIELLTQT-------SD-GESETVSVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 49 ~~~vGr~~~~~~l~~~l~~~-------~~-~~~~~~~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
.+++|-++..+.|..++... .. .....++-+.++|++|+|||++|+.++.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 46889998888887776321 00 0011345799999999999999999987
No 364
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.20 E-value=0.04 Score=52.12 Aligned_cols=40 Identities=28% Similarity=0.323 Sum_probs=29.6
Q ss_pred cchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcc
Q 036466 54 RYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 54 r~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
.++..+.+...+.. .....|+|.|.+|+|||||+..++..
T Consensus 22 ~~~~a~~~r~~~~~------~~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 22 NKRLADKNRKLLNK------HGVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp HHHHHHHHHHHHHH------TTCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHh------CCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 34445555555543 34678899999999999999999874
No 365
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.18 E-value=0.017 Score=52.65 Aligned_cols=23 Identities=39% Similarity=0.365 Sum_probs=16.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
...|+|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998875
No 366
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.17 E-value=0.027 Score=54.70 Aligned_cols=24 Identities=29% Similarity=0.527 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcc
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
...|+|.|++|+||||+|+.+...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999999999873
No 367
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.14 E-value=0.018 Score=51.80 Aligned_cols=21 Identities=33% Similarity=0.426 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 036466 78 VIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 78 ~v~i~G~~GiGKTtLa~~~~~ 98 (727)
.|+|.|++|+||||+++.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998886
No 368
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.14 E-value=0.021 Score=52.80 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
...|+|.|++|+||||+++.++.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999887
No 369
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.14 E-value=0.023 Score=52.73 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 036466 78 VIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 78 ~v~i~G~~GiGKTtLa~~~~~ 98 (727)
.|+|.|++|+||||+++.++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999999887
No 370
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.07 E-value=0.031 Score=50.69 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcc
Q 036466 75 TVSVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 75 ~~~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
....++|.|++|+||||+++.+...
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999998873
No 371
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.05 E-value=0.024 Score=53.45 Aligned_cols=23 Identities=26% Similarity=0.281 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
...|+|.|++|+||||+++.++.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999886
No 372
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.03 E-value=0.027 Score=52.90 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
-.+++|.|++|+|||||++.+..
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999998876
No 373
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.02 E-value=0.027 Score=53.36 Aligned_cols=22 Identities=41% Similarity=0.548 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 036466 77 SVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
.+|+|.|++|+||||+++.++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998876
No 374
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.02 E-value=0.024 Score=51.66 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 036466 78 VIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 78 ~v~i~G~~GiGKTtLa~~~~~ 98 (727)
+|+|.|++|+||||+|+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999886
No 375
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=94.01 E-value=0.14 Score=52.89 Aligned_cols=103 Identities=17% Similarity=0.087 Sum_probs=55.2
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhcCC---CCCCCChHHHHHHHHH
Q 036466 74 ETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVTGG---NHGNLDPDRLQKVLRD 150 (727)
Q Consensus 74 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~~---~~~~~~~~~~~~~l~~ 150 (727)
...++.+|.|.||.||||++.+.+.. ...+.+ ... .+...++-+.+... ..........-..+.+
T Consensus 159 ~~~~v~~I~G~aGsGKTt~I~~~~~~-------~~~lVl--TpT---~~aa~~l~~kl~~~~~~~~~~~~V~T~dsfL~~ 226 (446)
T 3vkw_A 159 SSAKVVLVDGVPGCGKTKEILSRVNF-------EEDLIL--VPG---RQAAEMIRRRANASGIIVATKDNVRTVDSFLMN 226 (446)
T ss_dssp CCSEEEEEEECTTSCHHHHHHHHCCT-------TTCEEE--ESC---HHHHHHHHHHHTTTSCCCCCTTTEEEHHHHHHT
T ss_pred ccccEEEEEcCCCCCHHHHHHHHhcc-------CCeEEE--eCC---HHHHHHHHHHhhhcCccccccceEEEeHHhhcC
Confidence 46789999999999999999988862 122222 222 22233333344211 1122233333334433
Q ss_pred HhCCc---eEEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEEec
Q 036466 151 SLNGK---RYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTT 192 (727)
Q Consensus 151 ~l~~~---~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~iliTs 192 (727)
..... -=++|+|++...+...+..+..... ..++|+.=
T Consensus 227 ~~~~~~~~~d~liiDE~sm~~~~~l~~l~~~~~----~~~vilvG 267 (446)
T 3vkw_A 227 YGKGARCQFKRLFIDEGLMLHTGCVNFLVEMSL----CDIAYVYG 267 (446)
T ss_dssp TTSSCCCCCSEEEEETGGGSCHHHHHHHHHHTT----CSEEEEEE
T ss_pred CCCCCCCcCCEEEEeCcccCCHHHHHHHHHhCC----CCEEEEec
Confidence 22211 2489999997666555555544332 25555544
No 376
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.00 E-value=0.027 Score=50.43 Aligned_cols=21 Identities=29% Similarity=0.406 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 036466 78 VIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 78 ~v~i~G~~GiGKTtLa~~~~~ 98 (727)
.|+|.|++|+||||+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998886
No 377
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.98 E-value=0.28 Score=51.50 Aligned_cols=24 Identities=38% Similarity=0.490 Sum_probs=22.1
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhc
Q 036466 75 TVSVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 75 ~~~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
...+++|.|++|+|||||++.++.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHH
Confidence 467999999999999999999987
No 378
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.97 E-value=0.028 Score=52.27 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 036466 78 VIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 78 ~v~i~G~~GiGKTtLa~~~~~ 98 (727)
.|+|.|++|+||||+++.++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999998875
No 379
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.95 E-value=0.027 Score=54.14 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
+..++|.|++|+||||+++.++.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999985
No 380
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.93 E-value=0.038 Score=48.75 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
-.+++|.|+.|+|||||++.++.
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999887
No 381
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.93 E-value=0.034 Score=54.67 Aligned_cols=24 Identities=33% Similarity=0.552 Sum_probs=21.5
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHh
Q 036466 74 ETVSVIPIVGIGGLGKTALAKLLY 97 (727)
Q Consensus 74 ~~~~~v~i~G~~GiGKTtLa~~~~ 97 (727)
..+.+|+|+|++|+||||+|+.+.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 346789999999999999999887
No 382
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.92 E-value=0.048 Score=54.07 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=21.9
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhc
Q 036466 75 TVSVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 75 ~~~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
+..+++|.|++|+||||+++.++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 456999999999999999999987
No 383
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.92 E-value=0.18 Score=51.66 Aligned_cols=111 Identities=14% Similarity=0.164 Sum_probs=57.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCc-eEEEEecCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhC
Q 036466 75 TVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFEL-KIWICVSEDSGKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLN 153 (727)
Q Consensus 75 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~-~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~ 153 (727)
+..+++|+|++|+||||+++.+... ......+ ++++... ... ....-. ..........+.......+...+.
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~--~~~~~~g~I~~~e~~--~e~--~~~~~~-~~v~Q~~~g~~~~~~~~~l~~~L~ 207 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDY--INQTKSYHIITIEDP--IEY--VFKHKK-SIVNQREVGEDTKSFADALRAALR 207 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHH--HHHHSCCEEEEEESS--CCS--CCCCSS-SEEEEEEBTTTBSCSHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh--cCcCCCcEEEEeccc--Hhh--hhccCc-eEEEeeecCCCHHHHHHHHHHHhh
Confidence 3468999999999999999998873 3322223 3333321 000 000000 000000000011223456777777
Q ss_pred CceEEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEEecCchHH
Q 036466 154 GKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNKV 197 (727)
Q Consensus 154 ~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~iliTsr~~~~ 197 (727)
..+=+|++|+.. +........... ..|..|+.|+.....
T Consensus 208 ~~pd~illdE~~--d~e~~~~~l~~~---~~g~~vi~t~H~~~~ 246 (372)
T 2ewv_A 208 EDPDVIFVGEMR--DLETVETALRAA---ETGHLVFGTLHTNTA 246 (372)
T ss_dssp SCCSEEEESCCC--SHHHHHHHHHHH---TTTCEEEECCCCCSH
T ss_pred hCcCEEEECCCC--CHHHHHHHHHHH---hcCCEEEEEECcchH
Confidence 778899999995 332333323322 235668888776543
No 384
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.92 E-value=0.026 Score=52.85 Aligned_cols=24 Identities=29% Similarity=0.338 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcc
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
...|+|.|++|+||||+++.+...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999873
No 385
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.91 E-value=0.029 Score=52.27 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
-.+++|.|++|+|||||++.+..
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999998876
No 386
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.89 E-value=0.025 Score=53.28 Aligned_cols=23 Identities=39% Similarity=0.560 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
..+++|.|++|+|||||++.++.
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999998886
No 387
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.86 E-value=0.035 Score=53.36 Aligned_cols=24 Identities=17% Similarity=0.248 Sum_probs=21.4
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhc
Q 036466 75 TVSVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 75 ~~~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
+..+++|.|+.|+|||||++.++.
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998876
No 388
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.80 E-value=0.036 Score=55.24 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=22.4
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHhc
Q 036466 74 ETVSVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 74 ~~~~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
.+..+++|.|++|+|||||++.+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 4567999999999999999998886
No 389
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=93.80 E-value=0.033 Score=55.98 Aligned_cols=36 Identities=25% Similarity=0.257 Sum_probs=27.1
Q ss_pred HHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcc
Q 036466 59 EKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 59 ~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
-..++.+.+... -..++|+|.+|+|||+|+.++++.
T Consensus 163 iraID~l~Pigr-----GQR~lIfg~~g~GKT~Ll~~Ia~~ 198 (427)
T 3l0o_A 163 TRLIDLFAPIGK-----GQRGMIVAPPKAGKTTILKEIANG 198 (427)
T ss_dssp HHHHHHHSCCBT-----TCEEEEEECTTCCHHHHHHHHHHH
T ss_pred chhhhhcccccC-----CceEEEecCCCCChhHHHHHHHHH
Confidence 345666766432 236899999999999999998884
No 390
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.77 E-value=0.15 Score=61.79 Aligned_cols=87 Identities=13% Similarity=0.053 Sum_probs=57.2
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhcCCC-----CCCCChHHHHHHHH
Q 036466 75 TVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVTGGN-----HGNLDPDRLQKVLR 149 (727)
Q Consensus 75 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-----~~~~~~~~~~~~l~ 149 (727)
.-+++.|+|++|+||||||.+++.. ....-..++|++........ .+..++... ....+.+++.+.++
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~--~~~~G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~i~~~~~~e~~l~~l~ 454 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICD 454 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH--HHHhCCCeEEEEccCchHHH-----HHHHcCCCHHHeEEcCCCCHHHHHHHHH
Confidence 3469999999999999999999984 33333567898887665543 144443211 12234556666665
Q ss_pred HHhC-CceEEEEEcCCCCCC
Q 036466 150 DSLN-GKRYLLVMDDVWNED 168 (727)
Q Consensus 150 ~~l~-~~~~LlvlDd~~~~~ 168 (727)
+..+ .+.-+||+|.+....
T Consensus 455 ~lv~~~~~~lVVIDSL~al~ 474 (1706)
T 3cmw_A 455 ALARSGAVDVIVVDSVAALT 474 (1706)
T ss_dssp HHHHHTCCSEEEESCSTTCC
T ss_pred HHHHhcCCCEEEECCHHHhh
Confidence 5443 356799999996653
No 391
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.74 E-value=0.047 Score=50.02 Aligned_cols=26 Identities=38% Similarity=0.394 Sum_probs=22.1
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHhcc
Q 036466 74 ETVSVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 74 ~~~~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
.....|+|.|.+|+|||||+..+...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34558999999999999999988864
No 392
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=93.72 E-value=0.03 Score=61.80 Aligned_cols=45 Identities=22% Similarity=0.282 Sum_probs=37.9
Q ss_pred CCCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhc
Q 036466 46 VRPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 46 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
..-..++|.+..++.+...+... ..++|+|++|+||||||+.++.
T Consensus 38 ~~l~~i~G~~~~l~~l~~~i~~g--------~~vll~Gp~GtGKTtlar~ia~ 82 (604)
T 3k1j_A 38 KLIDQVIGQEHAVEVIKTAANQK--------RHVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp SHHHHCCSCHHHHHHHHHHHHTT--------CCEEEECCTTSSHHHHHHHHHH
T ss_pred cccceEECchhhHhhccccccCC--------CEEEEEeCCCCCHHHHHHHHhc
Confidence 33456899999999988888652 3799999999999999999987
No 393
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.66 E-value=0.033 Score=52.34 Aligned_cols=21 Identities=29% Similarity=0.482 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 036466 78 VIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 78 ~v~i~G~~GiGKTtLa~~~~~ 98 (727)
.|+|.|++|+||||+|+.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998876
No 394
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.65 E-value=0.05 Score=51.18 Aligned_cols=41 Identities=27% Similarity=0.225 Sum_probs=30.7
Q ss_pred ecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcc
Q 036466 53 GRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 53 Gr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
+..+..+.+...+.. ...+.++|.|.+|+|||||+..+...
T Consensus 13 ~~~~~~~~~~~~~~~------~~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 13 ENKRLAEKNREALRE------SGTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHHHH------HTCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred hcHHHHHHHHHhhcc------cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 444555556655543 34679999999999999999998874
No 395
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.61 E-value=0.033 Score=51.73 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 036466 77 SVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
..|+|.|++|+||||+++.++..
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999999988873
No 396
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.59 E-value=0.033 Score=52.81 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
...|+|.|++|+||||+++.++.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998886
No 397
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.59 E-value=0.099 Score=52.55 Aligned_cols=106 Identities=16% Similarity=0.121 Sum_probs=55.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCce
Q 036466 77 SVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKR 156 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 156 (727)
..++|.|+.|+|||||++.+..- . ....+.+.+.-......... . ..... ..+ ........+...+..++
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~--~-~~~~g~i~i~~~~e~~~~~~-~---~~i~~--~~g-gg~~~r~~la~aL~~~p 241 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEF--I-PKEERIISIEDTEEIVFKHH-K---NYTQL--FFG-GNITSADCLKSCLRMRP 241 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGG--S-CTTSCEEEEESSCCCCCSSC-S---SEEEE--ECB-TTBCHHHHHHHHTTSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC--C-cCCCcEEEECCeeccccccc-h---hEEEE--EeC-CChhHHHHHHHHhhhCC
Confidence 37999999999999999988863 2 12244555442211100000 0 00000 000 12234556777788888
Q ss_pred EEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEEecCchHH
Q 036466 157 YLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNKV 197 (727)
Q Consensus 157 ~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~iliTsr~~~~ 197 (727)
=++++|+.... ..+. ....+.. + +.-+++|+.....
T Consensus 242 ~ilildE~~~~--e~~~-~l~~~~~-g-~~tvi~t~H~~~~ 277 (330)
T 2pt7_A 242 DRIILGELRSS--EAYD-FYNVLCS-G-HKGTLTTLHAGSS 277 (330)
T ss_dssp SEEEECCCCST--HHHH-HHHHHHT-T-CCCEEEEEECSSH
T ss_pred CEEEEcCCChH--HHHH-HHHHHhc-C-CCEEEEEEcccHH
Confidence 89999998542 2222 3333332 1 2225666655433
No 398
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.57 E-value=0.034 Score=52.18 Aligned_cols=21 Identities=19% Similarity=0.417 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 036466 78 VIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 78 ~v~i~G~~GiGKTtLa~~~~~ 98 (727)
.|+|.|++|+||||+|+.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999998875
No 399
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=93.57 E-value=0.18 Score=64.37 Aligned_cols=140 Identities=15% Similarity=0.058 Sum_probs=76.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCce
Q 036466 77 SVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKR 156 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 156 (727)
+-|.++|++|+|||++|+.+.... ..+ ..+.+.++...+...++..+-..+.......... ....-.+++
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~---~~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~------~~P~~~gk~ 1337 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNS---SLY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGLT------LLPKSDIKN 1337 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC---SSC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEE------EEEBSSSSC
T ss_pred CeEEEECCCCCCHHHHHHHHHhcC---CCC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCcc------ccCCCCCce
Confidence 478999999999999997776531 112 2346677776666655554444332110000000 000003578
Q ss_pred EEEEEcCCCCCCh------hhHHHHHHhhcCC-----CC-------CCEEEEecCchH------HHHHHhhcCCCCceec
Q 036466 157 YLLVMDDVWNEDP------RAWGELKSLLLGG-----AE-------GSKILVTTRSNK------VALIMATMRGTTGYNL 212 (727)
Q Consensus 157 ~LlvlDd~~~~~~------~~~~~~~~~l~~~-----~~-------~~~iliTsr~~~------~~~~~~~~~~~~~~~l 212 (727)
+++++||++-... ...+.++..+-.+ .. +..+|.++-... +... ..+....+.+
T Consensus 1338 ~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~r--llRrf~vi~i 1415 (2695)
T 4akg_A 1338 LVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSER--FTRHAAILYL 1415 (2695)
T ss_dssp EEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHH--HHTTEEEEEC
T ss_pred EEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChh--hhheeeEEEe
Confidence 9999999765432 2344455444321 11 233444543321 1111 1223477899
Q ss_pred CCCChhhHHHHHHHhh
Q 036466 213 QELPYKDCLSLFMKCA 228 (727)
Q Consensus 213 ~~l~~~~~~~l~~~~~ 228 (727)
...+.++-..+|....
T Consensus 1416 ~~P~~~~l~~I~~~il 1431 (2695)
T 4akg_A 1416 GYPSGKSLSQIYEIYY 1431 (2695)
T ss_dssp CCCTTTHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999888887654
No 400
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=93.54 E-value=0.1 Score=47.93 Aligned_cols=50 Identities=24% Similarity=0.256 Sum_probs=31.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHH
Q 036466 78 VIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIIN 129 (727)
Q Consensus 78 ~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~ 129 (727)
.|+|-|.-|+||||.++.++.. .+.....+++..-.......+..+.++.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~--L~~~g~~v~~treP~~t~~~~~ir~~l~ 51 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQY--LEKRGKKVILKREPGGTETGEKIRKILL 51 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH--HHHCCCcEEEEECCCCCcHHHHHHHHhh
Confidence 3788999999999999999884 4433333444433333334445555543
No 401
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.53 E-value=0.039 Score=50.13 Aligned_cols=23 Identities=30% Similarity=0.317 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 036466 77 SVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
+.|+|.|++|+||||||.+++..
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999874
No 402
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=93.53 E-value=0.52 Score=44.71 Aligned_cols=107 Identities=15% Similarity=0.114 Sum_probs=56.3
Q ss_pred cchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhcC
Q 036466 54 RYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVTG 133 (727)
Q Consensus 54 r~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~ 133 (727)
|+.+.+.+..++.. . -+.|+|+.|.|||.+|..++... -..++++. . ...+..++.+.+..
T Consensus 95 ~~~Q~~ai~~~~~~------~---~~ll~~~tG~GKT~~a~~~~~~~-----~~~~liv~-P----~~~L~~q~~~~~~~ 155 (237)
T 2fz4_A 95 RDYQEKALERWLVD------K---RGCIVLPTGSGKTHVAMAAINEL-----STPTLIVV-P----TLALAEQWKERLGI 155 (237)
T ss_dssp CHHHHHHHHHHTTT------S---EEEEEESSSTTHHHHHHHHHHHS-----CSCEEEEE-S----SHHHHHHHHHHHGG
T ss_pred CHHHHHHHHHHHhC------C---CEEEEeCCCCCHHHHHHHHHHHc-----CCCEEEEe-C----CHHHHHHHHHHHHh
Confidence 45555555554432 1 28889999999999998777531 12233432 1 22344444443321
Q ss_pred --CC---------CCCC-----ChHHHHHHHHHHhCCceEEEEEcCCCCCChhhHHHHHHhhc
Q 036466 134 --GN---------HGNL-----DPDRLQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLL 180 (727)
Q Consensus 134 --~~---------~~~~-----~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~~~~~l~ 180 (727)
.. .... ..+.+.... +.+..+--+||+|+++......+..+...+.
T Consensus 156 ~~~~~v~~~~g~~~~~~~i~v~T~~~l~~~~-~~~~~~~~llIiDEaH~l~~~~~~~i~~~~~ 217 (237)
T 2fz4_A 156 FGEEYVGEFSGRIKELKPLTVSTYDSAYVNA-EKLGNRFMLLIFDEVHHLPAESYVQIAQMSI 217 (237)
T ss_dssp GCGGGEEEESSSCBCCCSEEEEEHHHHHHTH-HHHTTTCSEEEEECSSCCCTTTHHHHHHTCC
T ss_pred CCCCeEEEEeCCCCCcCCEEEEeHHHHHhhH-HHhcccCCEEEEECCccCCChHHHHHHHhcc
Confidence 00 0000 112222222 2333445699999998876666666655543
No 403
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=93.53 E-value=0.096 Score=52.22 Aligned_cols=44 Identities=18% Similarity=0.205 Sum_probs=32.2
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCC
Q 036466 74 ETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSG 119 (727)
Q Consensus 74 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~ 119 (727)
...++|+|+|.||+||||+|..++.. ....-..++.+++....+
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~--La~~G~~VlliD~D~~~~ 82 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAA--FSILGKRVLQIGCDPKHD 82 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEESSSCC
T ss_pred CCceEEEEECCCCccHHHHHHHHHHH--HHHCCCeEEEEeCCCCCC
Confidence 45678888899999999999999884 333334677888765443
No 404
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.46 E-value=0.071 Score=52.80 Aligned_cols=25 Identities=40% Similarity=0.444 Sum_probs=22.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcc
Q 036466 75 TVSVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 75 ~~~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
+..+++|.|+.|+||||+++.++..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4679999999999999999999973
No 405
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.44 E-value=0.048 Score=50.95 Aligned_cols=25 Identities=28% Similarity=0.290 Sum_probs=22.1
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcc
Q 036466 75 TVSVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 75 ~~~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
...+++|.|++|+||||+++.+...
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999874
No 406
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.44 E-value=0.047 Score=51.34 Aligned_cols=23 Identities=22% Similarity=0.366 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
..+|+|.|++|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998864
No 407
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.40 E-value=0.048 Score=54.24 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=22.1
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcc
Q 036466 75 TVSVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 75 ~~~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
..++|+|.|+.|+|||||+.+++..
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999873
No 408
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.37 E-value=0.047 Score=53.48 Aligned_cols=24 Identities=38% Similarity=0.310 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhc
Q 036466 75 TVSVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 75 ~~~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
.+++++|.|++|+||||||.+++.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHH
Confidence 467899999999999999999886
No 409
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=93.37 E-value=0.12 Score=49.07 Aligned_cols=23 Identities=39% Similarity=0.437 Sum_probs=19.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 036466 77 SVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
+.++|.|+.|+||||++..+..+
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~~ 99 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFILD 99 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHHhc
Confidence 47999999999999887666543
No 410
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=93.37 E-value=0.065 Score=51.50 Aligned_cols=38 Identities=21% Similarity=0.246 Sum_probs=26.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEe
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICV 114 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~ 114 (727)
-.+++|.|++|+|||||++.++..... ..-...+|+..
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~~~~~-~~~~~~~~~~~ 67 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAE-EYGEPGVFVTL 67 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHH-HHCCCEEEEES
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH-hCCCeEEEEEc
Confidence 358999999999999999998853121 22344556544
No 411
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.33 E-value=0.048 Score=53.53 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
.++++|.|++|+||||||..++.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 35899999999999999999886
No 412
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.31 E-value=0.08 Score=51.18 Aligned_cols=112 Identities=13% Similarity=0.177 Sum_probs=57.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCc
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGK 155 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~ 155 (727)
-.+++|.|+.|+||||+++.+.. .....+.+.+++.-... ..+.+.. ..+........+.......+.+.+..+
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g--~~~~~~~G~I~~~g~~i---~~~~~~~-~~~v~q~~~gl~~~~l~~~la~aL~~~ 98 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMID--YINQTKSYHIITIEDPI---EYVFKHK-KSIVNQREVGEDTKSFADALRAALRED 98 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHH--HHHHHCCCEEEEEESSC---CSCCCCS-SSEEEEEEBTTTBSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCCccHHHHHHHHHH--hCCCCCCCEEEEcCCcc---eeecCCc-ceeeeHHHhCCCHHHHHHHHHHHHhhC
Confidence 46899999999999999999887 33332233333321110 0000000 000000000001122345666666667
Q ss_pred eEEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEEecCchHHH
Q 036466 156 RYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNKVA 198 (727)
Q Consensus 156 ~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~iliTsr~~~~~ 198 (727)
+=++++|+.. +........... ..|.-|++|+......
T Consensus 99 p~illlDEp~--D~~~~~~~l~~~---~~g~~vl~t~H~~~~~ 136 (261)
T 2eyu_A 99 PDVIFVGEMR--DLETVETALRAA---ETGHLVFGTLHTNTAI 136 (261)
T ss_dssp CSEEEESCCC--SHHHHHHHHHHH---HTTCEEEEEECCSSHH
T ss_pred CCEEEeCCCC--CHHHHHHHHHHH---ccCCEEEEEeCcchHH
Confidence 7789999985 333333333322 1366688888765543
No 413
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.30 E-value=0.032 Score=52.65 Aligned_cols=23 Identities=22% Similarity=0.223 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
...|+|.|++|+||||+++.++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999886
No 414
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.30 E-value=0.14 Score=52.10 Aligned_cols=26 Identities=23% Similarity=0.357 Sum_probs=22.8
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHhcc
Q 036466 74 ETVSVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 74 ~~~~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
....+|+|+|.+|+||||++..++..
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999999999998873
No 415
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.25 E-value=0.044 Score=52.87 Aligned_cols=23 Identities=39% Similarity=0.530 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
..+|+|.|++|+||||+++.++.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999998885
No 416
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=93.17 E-value=0.049 Score=51.66 Aligned_cols=42 Identities=31% Similarity=0.319 Sum_probs=29.0
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcchhh---Hh-cCCceEEEEecC
Q 036466 75 TVSVIPIVGIGGLGKTALAKLLYNDQRV---EE-HFELKIWICVSE 116 (727)
Q Consensus 75 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~---~~-~f~~~~~~~~~~ 116 (727)
.-.+++|.|++|+|||||++.++..... .. ....++|++...
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 3469999999999999999999752111 11 124467776544
No 417
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.13 E-value=0.05 Score=54.32 Aligned_cols=22 Identities=36% Similarity=0.347 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 036466 77 SVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
++|+|.|++|+||||||..++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999998887
No 418
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=93.13 E-value=0.21 Score=54.90 Aligned_cols=23 Identities=30% Similarity=0.302 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 036466 77 SVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
+.++|+|.+|+||||++..+...
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~ 187 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAA 187 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHH
Confidence 58999999999999999888763
No 419
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.11 E-value=0.051 Score=53.91 Aligned_cols=23 Identities=35% Similarity=0.368 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
.++++|.|++|+||||||+.++.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998886
No 420
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.09 E-value=0.024 Score=55.97 Aligned_cols=24 Identities=17% Similarity=0.405 Sum_probs=18.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhc
Q 036466 75 TVSVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 75 ~~~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
+..+|+|.|++|+||||+|+.+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999886
No 421
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=93.07 E-value=0.12 Score=47.56 Aligned_cols=109 Identities=13% Similarity=0.038 Sum_probs=53.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhcCCCC--CCCChHHHHHHHHHHhC
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVTGGNH--GNLDPDRLQKVLRDSLN 153 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~--~~~~~~~~~~~l~~~l~ 153 (727)
-.+.+++|+.|.||||.+...+.+...++ ..++.+..... ...-...++..++.... ...+.. .+.+...
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g--~kVli~k~~~d--~R~ge~~i~s~~g~~~~a~~~~~~~----~~~~~~~ 99 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAK--QHAIVFKPCID--NRYSEEDVVSHNGLKVKAVPVSASK----DIFKHIT 99 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTT--CCEEEEECC-------------------CCEEECSSGG----GGGGGCC
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCC--CEEEEEEeccC--CcchHHHHHhhcCCeeEEeecCCHH----HHHHHHh
Confidence 46888999999999999988888543333 23333332211 11112233333321100 001111 1222222
Q ss_pred CceEEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEEecCch
Q 036466 154 GKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSN 195 (727)
Q Consensus 154 ~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~iliTsr~~ 195 (727)
++--+|++|+++-.+.... .+...+.+ .+..||+|-++.
T Consensus 100 ~~~dvViIDEaQF~~~~~V-~~l~~l~~--~~~~Vi~~Gl~~ 138 (214)
T 2j9r_A 100 EEMDVIAIDEVQFFDGDIV-EVVQVLAN--RGYRVIVAGLDQ 138 (214)
T ss_dssp SSCCEEEECCGGGSCTTHH-HHHHHHHH--TTCEEEEEECSB
T ss_pred cCCCEEEEECcccCCHHHH-HHHHHHhh--CCCEEEEEeccc
Confidence 2334999999977654444 33344333 377899998853
No 422
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.06 E-value=0.1 Score=46.80 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcc
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
.++++|.|.+|+|||||+..+...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 568999999999999999999874
No 423
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.05 E-value=0.032 Score=53.02 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=16.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHh-c
Q 036466 76 VSVIPIVGIGGLGKTALAKLLY-N 98 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~-~ 98 (727)
..+++|.|++|+|||||++.++ .
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 3589999999999999999988 5
No 424
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.01 E-value=0.044 Score=50.07 Aligned_cols=23 Identities=26% Similarity=0.274 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcch
Q 036466 78 VIPIVGIGGLGKTALAKLLYNDQ 100 (727)
Q Consensus 78 ~v~i~G~~GiGKTtLa~~~~~~~ 100 (727)
+++|.|+.|+|||||++.++...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 68999999999999999998743
No 425
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.00 E-value=0.026 Score=52.92 Aligned_cols=22 Identities=36% Similarity=0.591 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 036466 78 VIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 78 ~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
+|+|.|++|+||||+++.+...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999998873
No 426
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=92.99 E-value=0.094 Score=49.61 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=22.2
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcc
Q 036466 75 TVSVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 75 ~~~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
....|+|.|++|+||||+++.++..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999874
No 427
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=92.99 E-value=0.056 Score=56.45 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=22.7
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHhcc
Q 036466 74 ETVSVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 74 ~~~~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
..+.+|+|+|++|+||||+|++++..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 34679999999999999999998873
No 428
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.95 E-value=0.031 Score=50.13 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 036466 77 SVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
++++|+|++|+|||||++.+..-
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998873
No 429
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=92.94 E-value=0.18 Score=47.01 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcc
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
...|+|.|+.|+||||+++.+...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999874
No 430
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.88 E-value=0.062 Score=53.60 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhc
Q 036466 75 TVSVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 75 ~~~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
...+++|.|+.|+|||||++.+..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999998886
No 431
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.88 E-value=0.055 Score=50.31 Aligned_cols=21 Identities=24% Similarity=0.423 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 036466 78 VIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 78 ~v~i~G~~GiGKTtLa~~~~~ 98 (727)
+|+|.|++|+||||+++.++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998876
No 432
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=92.87 E-value=0.095 Score=53.07 Aligned_cols=25 Identities=40% Similarity=0.444 Sum_probs=22.7
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcc
Q 036466 75 TVSVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 75 ~~~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
+..+++|.|+.|+||||+++.++..
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhh
Confidence 5679999999999999999999973
No 433
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.83 E-value=0.17 Score=42.88 Aligned_cols=52 Identities=25% Similarity=0.372 Sum_probs=27.8
Q ss_pred EEEecCCCcc--ccccccCCCCcCcEEeccCCccccccC-ccccCCCCCCEeecCCCC
Q 036466 434 VLVLTNSAIE--VLPRKMGNLKQLRHLDLSGNRKIKKLP-NSICELQSLQTLNLGDCL 488 (727)
Q Consensus 434 ~L~l~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~ 488 (727)
+++.+++.++ .+|..+. .+|++|+|++|. +..+| ..|..+++|++|+|++|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCc-CCccChhhhhhccccCEEEecCCC
Confidence 5666666665 5554432 346666666665 33333 334455556666665543
No 434
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.81 E-value=0.056 Score=51.37 Aligned_cols=22 Identities=23% Similarity=0.492 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 036466 77 SVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
.+++|.|+.|+|||||++.++-
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 4899999999999999998875
No 435
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.81 E-value=0.055 Score=51.56 Aligned_cols=22 Identities=23% Similarity=0.422 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 036466 77 SVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
.+++|.|+.|+|||||.+.++-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 6899999999999999998885
No 436
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.80 E-value=0.054 Score=51.10 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
+.+++|.|++|+||||+++.++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998886
No 437
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=92.77 E-value=0.14 Score=47.57 Aligned_cols=104 Identities=15% Similarity=0.208 Sum_probs=55.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhcCCC-----C-----CCCChHHHHH
Q 036466 77 SVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVTGGN-----H-----GNLDPDRLQK 146 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-----~-----~~~~~~~~~~ 146 (727)
-.|++.|.||+||||++..++.. ....-..+.++++....+.. ...++..+.... . ...+.. .
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~--l~~~G~~V~v~d~D~q~~~~--~~al~~gl~~~~~~~~~~~~~~~~e~~l~---~ 79 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHA--QLRQGVRVMAGVVETHGRAE--TEALLNGLPQQPLLRTEYRGMTLEEMDLD---A 79 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHH--HHHTTCCEEEEECCCTTCHH--HHHHHTTSCBCCCEEEEETTEEEEECCHH---H
T ss_pred EEEEEECCCCCcHHHHHHHHHHH--HHHCCCCEEEEEeCCCCChh--HHHHhcCccccCcceeecCCcccccccHH---H
Confidence 34888999999999999888874 33222244555554432322 122233331110 0 011222 2
Q ss_pred HHHHHhCCceEEEEEcCCCCC------ChhhHHHHHHhhcCCCCCCEEEEecCc
Q 036466 147 VLRDSLNGKRYLLVMDDVWNE------DPRAWGELKSLLLGGAEGSKILVTTRS 194 (727)
Q Consensus 147 ~l~~~l~~~~~LlvlDd~~~~------~~~~~~~~~~~l~~~~~~~~iliTsr~ 194 (727)
.+. .++=++|+|++-.. ...-|..+...+. .|..++.|+.-
T Consensus 80 ~L~----~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~---sgidVitT~Nl 126 (228)
T 2r8r_A 80 LLK----AAPSLVLVDELAHTNAPGSRHTKRWQDIQELLA---AGIDVYTTVNV 126 (228)
T ss_dssp HHH----HCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHH---TTCEEEEEEEG
T ss_pred HHh----cCCCEEEEeCCCCCCcccchhHHHHHHHHHHHc---CCCCEEEEccc
Confidence 222 24669999987431 1224555555444 35568888763
No 438
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=92.75 E-value=0.055 Score=53.81 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 036466 77 SVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
.+|+|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998876
No 439
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=92.73 E-value=0.053 Score=50.78 Aligned_cols=21 Identities=24% Similarity=0.332 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 036466 78 VIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 78 ~v~i~G~~GiGKTtLa~~~~~ 98 (727)
.|+|.|++|+||||+|+.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999998886
No 440
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=92.71 E-value=0.094 Score=56.71 Aligned_cols=113 Identities=17% Similarity=0.068 Sum_probs=58.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhcC---------------CCCCCCC
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVTG---------------GNHGNLD 140 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~---------------~~~~~~~ 140 (727)
-.+++|.|++|+|||||++.++... ...-..++|+.... ...++...+ ..++. ..+...+
T Consensus 281 G~i~~i~G~~GsGKSTLl~~l~g~~--~~~G~~vi~~~~ee--~~~~l~~~~-~~~g~~~~~~~~~g~~~~~~~~p~~LS 355 (525)
T 1tf7_A 281 DSIILATGATGTGKTLLVSRFVENA--CANKERAILFAYEE--SRAQLLRNA-YSWGMDFEEMERQNLLKIVCAYPESAG 355 (525)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH--HTTTCCEEEEESSS--CHHHHHHHH-HTTSCCHHHHHHTTSEEECCCCGGGSC
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHH--HhCCCCEEEEEEeC--CHHHHHHHH-HHcCCCHHHHHhCCCEEEEEeccccCC
Confidence 3589999999999999999998732 22212345655432 233333222 11110 0111123
Q ss_pred hHHHH-HHHHHHhCCceEEEEEcCCCCCChh--------hHHHHHHhhcCCCCCCEEEEecCch
Q 036466 141 PDRLQ-KVLRDSLNGKRYLLVMDDVWNEDPR--------AWGELKSLLLGGAEGSKILVTTRSN 195 (727)
Q Consensus 141 ~~~~~-~~l~~~l~~~~~LlvlDd~~~~~~~--------~~~~~~~~l~~~~~~~~iliTsr~~ 195 (727)
..+.. ..+...+..++=++|+|-+...+.. ....+...+.. .|..||+||.+.
T Consensus 356 ~g~~q~~~~a~~l~~~p~llilDp~~~Ld~~~~~~~~~~~i~~ll~~l~~--~g~tvilvsh~~ 417 (525)
T 1tf7_A 356 LEDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQ--EEITGLFTNTSD 417 (525)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHH--TTCEEEEEEECS
T ss_pred HHHHHHHHHHHHHhhCCCEEEEcChHHHHhhCChHHHHHHHHHHHHHHHh--CCCEEEEEECcc
Confidence 44433 3444455667889999965222211 22223333332 366788877653
No 441
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=92.68 E-value=0.23 Score=52.61 Aligned_cols=48 Identities=17% Similarity=0.274 Sum_probs=33.9
Q ss_pred HHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCC
Q 036466 61 IIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSED 117 (727)
Q Consensus 61 l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~ 117 (727)
.++.|..... -..++|.|.+|+|||+|+.++++. .+-+.++|+-+++.
T Consensus 222 vID~l~Pigr-----Gqr~~Ifgg~g~GKT~L~~~ia~~----~~~~v~V~~~iGER 269 (600)
T 3vr4_A 222 VIDTFFPVTK-----GGAAAVPGPFGAGKTVVQHQIAKW----SDVDLVVYVGCGER 269 (600)
T ss_dssp HHHHHSCCBT-----TCEEEEECCTTSCHHHHHHHHHHH----SSCSEEEEEEEEEC
T ss_pred hhhccCCccC-----CCEEeeecCCCccHHHHHHHHHhc----cCCCEEEEEEeccc
Confidence 4455655432 236899999999999999988763 23356778877765
No 442
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=92.65 E-value=0.16 Score=48.66 Aligned_cols=49 Identities=22% Similarity=0.314 Sum_probs=32.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHH
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKI 127 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 127 (727)
-.++.|.|.+|+|||++|.+++.+.. ...-..++|++... +..++...+
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~-~~~~~~v~~~s~E~--~~~~~~~~~ 78 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGA-EEYGEPGVFVTLEE--RARDLRREM 78 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHH-HHHCCCEEEEESSS--CHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHH-HhcCCCceeecccC--CHHHHHHHH
Confidence 45899999999999999999886422 22233466766543 344444443
No 443
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=92.65 E-value=0.13 Score=50.05 Aligned_cols=40 Identities=18% Similarity=0.285 Sum_probs=29.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCC
Q 036466 77 SVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDS 118 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~ 118 (727)
++|+|.|.||+||||+|..++.. ....-..++.+++....
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~--la~~G~~VlliD~D~q~ 41 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSG--LHAMGKTIMVVGCDPKA 41 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH--HHTTTCCEEEEEECTTS
T ss_pred cEEEEecCCCCcHHHHHHHHHHH--HHHCCCcEEEEcCCCCC
Confidence 46777899999999999999973 33333467788876443
No 444
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=92.63 E-value=0.057 Score=50.95 Aligned_cols=21 Identities=33% Similarity=0.436 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 036466 78 VIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 78 ~v~i~G~~GiGKTtLa~~~~~ 98 (727)
.|+|.|++|+||||+++.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999998886
No 445
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=92.63 E-value=0.1 Score=49.96 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
...+.++|++|+|||.+|..+++
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHh
Confidence 45799999999999999998886
No 446
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.62 E-value=0.049 Score=52.23 Aligned_cols=22 Identities=32% Similarity=0.555 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 036466 77 SVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
..|+|.|++|+||||+++.++.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999886
No 447
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.62 E-value=0.06 Score=50.75 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 036466 77 SVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
.+++|.|+.|+|||||.+.++-
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999998875
No 448
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.60 E-value=0.16 Score=47.44 Aligned_cols=27 Identities=33% Similarity=0.369 Sum_probs=23.3
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHhcch
Q 036466 74 ETVSVIPIVGIGGLGKTALAKLLYNDQ 100 (727)
Q Consensus 74 ~~~~~v~i~G~~GiGKTtLa~~~~~~~ 100 (727)
.....|+|.|..|+||||+++.+....
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l 45 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYL 45 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 346789999999999999999999843
No 449
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=92.58 E-value=0.059 Score=51.26 Aligned_cols=24 Identities=25% Similarity=0.220 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcc
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
...|+|.|++|+||||+|+.++..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999998873
No 450
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=92.50 E-value=0.53 Score=51.51 Aligned_cols=23 Identities=30% Similarity=0.549 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
-..++|.|+.|+|||||++.+..
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999998875
No 451
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.46 E-value=0.06 Score=50.54 Aligned_cols=22 Identities=18% Similarity=0.385 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 036466 77 SVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
..|+|.|++|+||||+|+.++.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999998886
No 452
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=92.39 E-value=0.074 Score=49.31 Aligned_cols=41 Identities=27% Similarity=0.314 Sum_probs=20.7
Q ss_pred ecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcc
Q 036466 53 GRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 53 Gr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
++....+.+.+.... .+.-.|+|.|.+|+|||||+..+...
T Consensus 13 ~~~~~~~~m~~~~~~------~~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 13 GLVPRGSHMENLYFQ------GQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp -----------------------CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcccchhHHHhHhhc------CCeEEEEEECcCCCCHHHHHHHHHhC
Confidence 444444444444333 23456889999999999999888864
No 453
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=92.38 E-value=0.14 Score=51.76 Aligned_cols=44 Identities=20% Similarity=0.275 Sum_probs=32.1
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHhcchhhH--hcCCceEEEEecCCCC
Q 036466 74 ETVSVIPIVGIGGLGKTALAKLLYNDQRVE--EHFELKIWICVSEDSG 119 (727)
Q Consensus 74 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~--~~f~~~~~~~~~~~~~ 119 (727)
...+++++.|.||+||||+|..++.. .. ..-..++.+++....+
T Consensus 16 ~~~~i~~~~gkGGvGKTt~a~~lA~~--la~~~~g~~vllid~D~~~~ 61 (348)
T 3io3_A 16 DSLKWIFVGGKGGVGKTTTSSSVAVQ--LALAQPNEQFLLISTDPAHN 61 (348)
T ss_dssp TTCSEEEEECSTTSSHHHHHHHHHHH--HHHHCTTSCEEEEECCSSCH
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHH--HHHhcCCCeEEEEECCCCCC
Confidence 34579999999999999999998873 33 3334567777764433
No 454
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=92.35 E-value=0.071 Score=50.77 Aligned_cols=52 Identities=13% Similarity=0.156 Sum_probs=31.9
Q ss_pred HHHHHHhCCceEEEEEcCCCCC-ChhhHHHHHHhhc---CCCCCCEEEEecCchHH
Q 036466 146 KVLRDSLNGKRYLLVMDDVWNE-DPRAWGELKSLLL---GGAEGSKILVTTRSNKV 197 (727)
Q Consensus 146 ~~l~~~l~~~~~LlvlDd~~~~-~~~~~~~~~~~l~---~~~~~~~iliTsr~~~~ 197 (727)
-.+.+.+..++=++++|+--.. |......+...+. ....+..||++|.+...
T Consensus 136 v~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~ 191 (237)
T 2cbz_A 136 VSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSY 191 (237)
T ss_dssp HHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTT
T ss_pred HHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHH
Confidence 3445555567779999997443 4444555666663 22346678888877543
No 455
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=92.32 E-value=0.14 Score=51.31 Aligned_cols=45 Identities=18% Similarity=0.189 Sum_probs=32.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHH
Q 036466 75 TVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKR 121 (727)
Q Consensus 75 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 121 (727)
..+++++.|.||+||||+|..++. .....-..++.+++....+..
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~--~la~~g~~vllid~D~~~~l~ 59 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAI--QLAKVRRSVLLLSTDPAHNLS 59 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH--HHTTSSSCEEEEECCSSCHHH
T ss_pred CeEEEEEeCCCCccHHHHHHHHHH--HHHhCCCcEEEEECCCCCChh
Confidence 457889999999999999998887 333333457777776544433
No 456
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.24 E-value=0.072 Score=51.86 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 036466 77 SVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
.+++|.|+.|+|||||++.++-
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 4899999999999999998875
No 457
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.24 E-value=0.057 Score=50.15 Aligned_cols=22 Identities=32% Similarity=0.259 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 036466 78 VIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 78 ~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
+++|.|+.|+|||||++.++--
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7999999999999999988863
No 458
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=92.20 E-value=0.081 Score=46.67 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 036466 77 SVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
+.|+|.|.+|+||||+|.++..
T Consensus 17 ~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999998886
No 459
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=92.20 E-value=0.16 Score=50.11 Aligned_cols=40 Identities=20% Similarity=0.273 Sum_probs=29.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCC
Q 036466 77 SVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDS 118 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~ 118 (727)
++|+|.|.||+||||+|..++.. ....-..++.+++....
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~--La~~G~rVlliD~D~q~ 42 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAA--LAEMGKKVMIVGCDPKA 42 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH--HHHTTCCEEEEEECSSS
T ss_pred eEEEEeCCCcCcHHHHHHHHHHH--HHHCCCeEEEEecCCCC
Confidence 57888999999999999999984 33333356778876443
No 460
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=92.20 E-value=0.19 Score=53.00 Aligned_cols=46 Identities=22% Similarity=0.295 Sum_probs=33.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHH-HHHHH
Q 036466 77 SVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKR-QIMTK 126 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~-~~~~~ 126 (727)
..++|.|.+|+|||+|+.++++. .+-+..+|+-+++....- ++..+
T Consensus 228 qr~~I~g~~g~GKT~L~~~ia~~----~~~~~~V~~~iGER~~Ev~e~~~~ 274 (588)
T 3mfy_A 228 GTAAIPGPAGSGKTVTQHQLAKW----SDAQVVIYIGCGERGNEMTDVLEE 274 (588)
T ss_dssp CEEEECSCCSHHHHHHHHHHHHH----SSCSEEEEEECCSSSSHHHHHHHH
T ss_pred CeEEeecCCCCCHHHHHHHHHhc----cCCCEEEEEEecccHHHHHHHHHH
Confidence 36899999999999999988652 233567788887665443 44444
No 461
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=92.19 E-value=0.098 Score=46.48 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 036466 77 SVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
..|+|.|.+|+|||||+..+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999864
No 462
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=92.16 E-value=0.078 Score=50.53 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=21.8
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHhc
Q 036466 74 ETVSVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 74 ~~~~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
....+|+|.|++|+||||+++.++.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999998876
No 463
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.16 E-value=0.075 Score=51.45 Aligned_cols=22 Identities=32% Similarity=0.566 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 036466 77 SVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
.+++|.|+.|+|||||++.++-
T Consensus 33 e~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999998875
No 464
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.14 E-value=0.19 Score=60.96 Aligned_cols=84 Identities=12% Similarity=0.041 Sum_probs=59.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhcCCCC-----CCCChHHHHHHHHH
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVTGGNH-----GNLDPDRLQKVLRD 150 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-----~~~~~~~~~~~l~~ 150 (727)
-++|-|+|+.|+||||||.++.. ..+..-...+|++..+..+... ++.++..-. ++...++....+.+
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a--~~~~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~~ 1503 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA 1503 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH--HHHhcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHHH
Confidence 47999999999999999999998 4555556678998877666654 666643211 22334556666666
Q ss_pred HhCC-ceEEEEEcCCCC
Q 036466 151 SLNG-KRYLLVMDDVWN 166 (727)
Q Consensus 151 ~l~~-~~~LlvlDd~~~ 166 (727)
.+++ ..-+||+|.|..
T Consensus 1504 ~~~s~~~~~vvvDsv~a 1520 (1706)
T 3cmw_A 1504 LARSGAVDVIVVDSVAA 1520 (1706)
T ss_dssp HHHHTCCSEEEESCSTT
T ss_pred HHHcCCCCEEEEccHHh
Confidence 6654 567999999844
No 465
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=92.12 E-value=0.1 Score=54.48 Aligned_cols=39 Identities=31% Similarity=0.232 Sum_probs=28.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEec
Q 036466 75 TVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVS 115 (727)
Q Consensus 75 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~ 115 (727)
++++|+|+|.+|+||||++..++.....+ -..++++++.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~--G~kVllv~~D 136 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKR--GLKPALIAAD 136 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHH--HCCEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEecc
Confidence 45799999999999999999999843322 2345566554
No 466
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.12 E-value=0.21 Score=47.18 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcc
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
...|+|.|++|+||||+++.++..
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~ 50 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVET 50 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999874
No 467
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=92.11 E-value=0.17 Score=48.94 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=22.8
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHhcc
Q 036466 74 ETVSVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 74 ~~~~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
....++++.|.+|+||||++..++..
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~ 37 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRY 37 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999874
No 468
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.05 E-value=0.088 Score=50.33 Aligned_cols=23 Identities=35% Similarity=0.482 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
-.+++|.|+.|+|||||++.++-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999998875
No 469
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.01 E-value=0.08 Score=51.32 Aligned_cols=22 Identities=36% Similarity=0.697 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 036466 77 SVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
.+++|.|+.|+|||||++.++-
T Consensus 38 e~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 4899999999999999998885
No 470
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.97 E-value=0.083 Score=50.40 Aligned_cols=22 Identities=23% Similarity=0.520 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 036466 77 SVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
.+++|.|+.|+|||||.+.++-
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999998876
No 471
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=91.95 E-value=0.083 Score=51.02 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 036466 77 SVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
.+++|.|+.|+|||||.+.++-
T Consensus 34 e~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999998875
No 472
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.94 E-value=0.071 Score=49.75 Aligned_cols=22 Identities=36% Similarity=0.581 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 036466 77 SVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
.+++|.|+.|+|||||.+.++-
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3799999999999999998876
No 473
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=91.94 E-value=0.082 Score=48.03 Aligned_cols=22 Identities=41% Similarity=0.508 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 036466 78 VIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 78 ~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
.|+|.|.+|+|||||++.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999999873
No 474
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=91.93 E-value=0.084 Score=50.58 Aligned_cols=22 Identities=50% Similarity=0.721 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 036466 77 SVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
.+++|.|+.|+|||||++.++.
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999998876
No 475
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=91.91 E-value=0.09 Score=49.86 Aligned_cols=25 Identities=24% Similarity=0.171 Sum_probs=22.0
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHhc
Q 036466 74 ETVSVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 74 ~~~~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
.....++|.|+.|+||||+++.+..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 3457999999999999999998876
No 476
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=91.90 E-value=0.084 Score=51.03 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 036466 77 SVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
.+++|.|+.|+|||||++.++-
T Consensus 51 ei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEEcCCCCcHHHHHHHHHc
Confidence 4899999999999999998885
No 477
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=91.87 E-value=0.089 Score=53.65 Aligned_cols=23 Identities=39% Similarity=0.528 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
.++|+|.|++|+||||||.+++.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHH
Confidence 35899999999999999999887
No 478
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=91.85 E-value=0.077 Score=54.83 Aligned_cols=50 Identities=14% Similarity=0.162 Sum_probs=32.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcchhhHhcCC----ceEEEEecCCC-CHHHHHHHHHH
Q 036466 78 VIPIVGIGGLGKTALAKLLYNDQRVEEHFE----LKIWICVSEDS-GKRQIMTKIIN 129 (727)
Q Consensus 78 ~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~----~~~~~~~~~~~-~~~~~~~~ll~ 129 (727)
.++|.|.+|+|||+|+.++++.... +.+ ..+|+-+++.. ...++.+++..
T Consensus 153 r~~Ifgg~G~GKt~L~~~Ia~~~~~--~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~ 207 (465)
T 3vr4_D 153 KLPVFSGSGLPHKELAAQIARQATV--LDSSDDFAVVFAAIGITFEEAEFFMEDFRQ 207 (465)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHCBC--SSCSSCEEEEEEEEEECHHHHHHHHHHHHH
T ss_pred EEEEeCCCCcChHHHHHHHHHHHHh--ccCCCceEEEEEEecCCcHHHHHHHHHHhh
Confidence 4789999999999999988874222 122 45677776543 34455555443
No 479
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=91.85 E-value=0.087 Score=49.83 Aligned_cols=53 Identities=11% Similarity=0.001 Sum_probs=33.3
Q ss_pred HHHHHHhCCceEEEEEcCCCCC-ChhhHHHHHHhh-cCCCCCCEEEEecCchHHH
Q 036466 146 KVLRDSLNGKRYLLVMDDVWNE-DPRAWGELKSLL-LGGAEGSKILVTTRSNKVA 198 (727)
Q Consensus 146 ~~l~~~l~~~~~LlvlDd~~~~-~~~~~~~~~~~l-~~~~~~~~iliTsr~~~~~ 198 (727)
-.+.+.+..++=++++|+--.. |......+...+ .....+..||++|.+....
T Consensus 139 v~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~ 193 (229)
T 2pze_A 139 ISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHL 193 (229)
T ss_dssp HHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHH
T ss_pred HHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHH
Confidence 3455666677889999997443 444445555543 3333466788888876554
No 480
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=91.84 E-value=0.087 Score=48.22 Aligned_cols=24 Identities=21% Similarity=0.423 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcc
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
.-.++|.|.+|+|||||++.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999998864
No 481
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=91.82 E-value=0.7 Score=49.68 Aligned_cols=24 Identities=29% Similarity=0.612 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhc
Q 036466 75 TVSVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 75 ~~~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
+-.+++|.|+.|+|||||.+.++-
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~G 47 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAG 47 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 346999999999999999998875
No 482
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=91.81 E-value=0.084 Score=52.06 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
-.+++|+|++|+|||||++.+..
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhh
Confidence 45899999999999999998886
No 483
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=91.80 E-value=0.18 Score=47.39 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=18.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcc
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
...|+|.|+.|+||||+++.++..
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~ 48 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDR 48 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999884
No 484
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=91.79 E-value=0.087 Score=53.79 Aligned_cols=24 Identities=29% Similarity=0.174 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhc
Q 036466 75 TVSVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 75 ~~~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
..+.++|+|++|+|||||++.++.
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 456899999999999999998886
No 485
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=91.77 E-value=0.14 Score=46.57 Aligned_cols=25 Identities=20% Similarity=0.363 Sum_probs=21.9
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcc
Q 036466 75 TVSVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 75 ~~~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
....|+|.|.+|+|||||+..+...
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467999999999999999999873
No 486
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.75 E-value=0.091 Score=50.48 Aligned_cols=22 Identities=36% Similarity=0.614 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 036466 77 SVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
.+++|.|+.|+|||||++.++-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999998886
No 487
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.74 E-value=0.09 Score=50.60 Aligned_cols=22 Identities=23% Similarity=0.542 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 036466 77 SVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
.+++|.|+.|+|||||.+.++-
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999998876
No 488
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=91.67 E-value=0.054 Score=59.34 Aligned_cols=51 Identities=20% Similarity=0.180 Sum_probs=32.3
Q ss_pred CceeecchhHHHHHHHHhcCCC---C--CCCCeEEEEEEcCCCCcHHHHHHHHhcc
Q 036466 49 SDIIGRYEDGEKIIELLTQTSD---G--ESETVSVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 49 ~~~vGr~~~~~~l~~~l~~~~~---~--~~~~~~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
+.++|.+...+.+.-++..... . .-.....|.++|++|+|||+||+.++..
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~ 350 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRV 350 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTT
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHh
Confidence 4678888866655444432100 0 0000115899999999999999988873
No 489
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=91.66 E-value=0.093 Score=50.71 Aligned_cols=22 Identities=45% Similarity=0.774 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 036466 77 SVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
.+++|.|+.|+|||||++.++.
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999998876
No 490
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=91.65 E-value=0.25 Score=45.89 Aligned_cols=52 Identities=13% Similarity=0.169 Sum_probs=31.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHH
Q 036466 77 SVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIIN 129 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~ 129 (727)
..|++.|+.|+||||+++.+....... .+..+.+..-.......+..++++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~-~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQL-GIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc-CCCcceeeeCCCCCHHHHHHHHHHh
Confidence 479999999999999999998743222 2323333322222223344555544
No 491
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=91.62 E-value=0.094 Score=50.90 Aligned_cols=22 Identities=36% Similarity=0.511 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 036466 77 SVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
.+++|.|+.|+|||||++.++-
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999998886
No 492
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=91.62 E-value=0.77 Score=50.08 Aligned_cols=124 Identities=15% Similarity=0.096 Sum_probs=65.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcchhh-Hhc-C--CceEEEEecC----CCCHH--------------HHHHHHHHHhcCC
Q 036466 77 SVIPIVGIGGLGKTALAKLLYNDQRV-EEH-F--ELKIWICVSE----DSGKR--------------QIMTKIINSVTGG 134 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~~~~~-~~~-f--~~~~~~~~~~----~~~~~--------------~~~~~ll~~l~~~ 134 (727)
.+++|.|+.|+|||||++.++--... .+. . ..+.|+.-.. ..++. ....+++..++..
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~ 458 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRID 458 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTST
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCCh
Confidence 47999999999999999998863111 111 0 0122332110 00111 2233344444322
Q ss_pred C-----CCCCChHH-HHHHHHHHhCCceEEEEEcCCCCC-ChhhHHHHHHhhcCC--CCCCEEEEecCchHHHHH
Q 036466 135 N-----HGNLDPDR-LQKVLRDSLNGKRYLLVMDDVWNE-DPRAWGELKSLLLGG--AEGSKILVTTRSNKVALI 200 (727)
Q Consensus 135 ~-----~~~~~~~~-~~~~l~~~l~~~~~LlvlDd~~~~-~~~~~~~~~~~l~~~--~~~~~iliTsr~~~~~~~ 200 (727)
. ....+..+ ..-.+.+++..++=++++|+--.. |...-..+...+... ..|..||++|.+......
T Consensus 459 ~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~ 533 (608)
T 3j16_B 459 DIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATY 533 (608)
T ss_dssp TTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHH
T ss_pred hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 1 12233333 345566778888999999996332 433333333333321 135568888887665543
No 493
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=91.58 E-value=0.096 Score=50.97 Aligned_cols=53 Identities=23% Similarity=0.252 Sum_probs=31.7
Q ss_pred HHHHHHhCCceEEEEEcCCCCC-ChhhHHHHHHhhcCC--CCCCEEEEecCchHHH
Q 036466 146 KVLRDSLNGKRYLLVMDDVWNE-DPRAWGELKSLLLGG--AEGSKILVTTRSNKVA 198 (727)
Q Consensus 146 ~~l~~~l~~~~~LlvlDd~~~~-~~~~~~~~~~~l~~~--~~~~~iliTsr~~~~~ 198 (727)
-.+.+.+-.++=++++|+--.. |...-..+...+... ..+..||++|.+....
T Consensus 165 v~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~ 220 (271)
T 2ixe_A 165 VALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLA 220 (271)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHH
T ss_pred HHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHH
Confidence 3455666677889999996443 444444455555432 2366788888776543
No 494
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=91.58 E-value=0.22 Score=51.13 Aligned_cols=41 Identities=15% Similarity=0.235 Sum_probs=30.9
Q ss_pred CCeEEEEEEc-CCCCcHHHHHHHHhcchhhHhcCCceEEEEecC
Q 036466 74 ETVSVIPIVG-IGGLGKTALAKLLYNDQRVEEHFELKIWICVSE 116 (727)
Q Consensus 74 ~~~~~v~i~G-~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~ 116 (727)
.+.++|+|+| .||+||||+|..++.. ....-..++.+++..
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~--La~~g~rVlliD~D~ 182 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIA--HANMGKKVFYLNIEQ 182 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHH--HHHHTCCEEEEECCT
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHH--HHhCCCCEEEEECCC
Confidence 4578888885 9999999999999874 333334677888763
No 495
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=91.58 E-value=1 Score=49.18 Aligned_cols=23 Identities=35% Similarity=0.598 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
-.+++|.|+.|+|||||.+.++-
T Consensus 103 Gei~~LvGpNGaGKSTLLkiL~G 125 (608)
T 3j16_B 103 GQVLGLVGTNGIGKSTALKILAG 125 (608)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCChHHHHHHHHhc
Confidence 34899999999999999998875
No 496
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=91.56 E-value=0.097 Score=50.14 Aligned_cols=22 Identities=27% Similarity=0.517 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 036466 77 SVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
.+++|.|+.|+|||||.+.++-
T Consensus 27 e~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4899999999999999998875
No 497
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=91.48 E-value=0.12 Score=45.55 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 036466 77 SVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
+.|++.|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999998864
No 498
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=91.46 E-value=0.2 Score=46.37 Aligned_cols=42 Identities=17% Similarity=0.075 Sum_probs=29.9
Q ss_pred EEEEEE-cCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCH
Q 036466 77 SVIPIV-GIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGK 120 (727)
Q Consensus 77 ~~v~i~-G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~ 120 (727)
++|+|+ +.||+||||++..++.. ....-..++.+++....+.
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~--la~~g~~vlliD~D~~~~~ 44 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATA--LSRSGYNIAVVDTDPQMSL 44 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHH--HHHTTCCEEEEECCTTCHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHH--HHHCCCeEEEEECCCCCCH
Confidence 467777 68999999999999984 3333346778887654443
No 499
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=91.43 E-value=0.11 Score=47.98 Aligned_cols=24 Identities=21% Similarity=0.423 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcc
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
.-.++|.|.+|+|||||++.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999998864
No 500
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=91.42 E-value=0.088 Score=51.66 Aligned_cols=22 Identities=41% Similarity=0.478 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 036466 77 SVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
.+++|.|++|+|||||+..++.
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
Done!