Query 036467
Match_columns 369
No_of_seqs 154 out of 1561
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 12:57:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036467.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036467hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01640 F_box_assoc_1 F-box 100.0 7.6E-35 1.6E-39 251.3 26.4 225 93-343 1-230 (230)
2 PF07734 FBA_1: F-box associat 99.7 4.5E-16 9.8E-21 126.5 18.3 152 202-365 1-164 (164)
3 PF08268 FBA_3: F-box associat 99.6 7.4E-15 1.6E-19 114.4 14.4 116 202-330 1-119 (129)
4 PLN03215 ascorbic acid mannose 99.6 2.5E-13 5.5E-18 121.4 22.4 328 1-367 6-373 (373)
5 PHA02713 hypothetical protein; 99.5 2.6E-12 5.6E-17 124.3 22.0 217 92-352 298-544 (557)
6 KOG4441 Proteins containing BT 99.4 9E-12 2E-16 120.2 20.0 216 91-349 326-554 (571)
7 KOG4441 Proteins containing BT 99.4 3.2E-11 6.9E-16 116.4 20.1 200 108-349 300-507 (571)
8 PHA02713 hypothetical protein; 99.4 9.5E-11 2.1E-15 113.5 21.5 197 109-349 272-497 (557)
9 PHA03098 kelch-like protein; P 99.4 1.6E-10 3.4E-15 112.4 22.5 197 109-349 311-519 (534)
10 PHA02790 Kelch-like protein; P 99.3 5.6E-10 1.2E-14 106.5 22.3 183 109-347 287-476 (480)
11 PLN02153 epithiospecifier prot 99.2 3E-09 6.5E-14 97.4 22.2 209 109-350 50-293 (341)
12 TIGR03547 muta_rot_YjhT mutatr 99.2 6.4E-09 1.4E-13 95.4 23.1 229 95-349 15-306 (346)
13 TIGR03548 mutarot_permut cycli 99.1 3.7E-08 8.1E-13 89.5 24.4 157 110-292 40-204 (323)
14 PLN02193 nitrile-specifier pro 99.1 2.6E-08 5.7E-13 94.9 20.6 207 109-350 193-419 (470)
15 PRK14131 N-acetylneuraminic ac 99.1 7.1E-08 1.5E-12 89.4 22.9 186 93-294 34-260 (376)
16 PHA03098 kelch-like protein; P 99.0 2E-08 4.3E-13 97.7 18.9 195 110-349 265-472 (534)
17 PLN02153 epithiospecifier prot 99.0 1.8E-07 3.9E-12 85.7 22.7 187 92-293 80-295 (341)
18 PHA02790 Kelch-like protein; P 99.0 3.8E-08 8.2E-13 94.0 18.6 160 92-288 313-476 (480)
19 PF12937 F-box-like: F-box-lik 98.8 8.7E-10 1.9E-14 69.2 0.4 40 1-40 3-42 (47)
20 PF00646 F-box: F-box domain; 98.8 1.4E-09 3E-14 68.7 0.4 43 1-43 5-47 (48)
21 PRK14131 N-acetylneuraminic ac 98.7 9.5E-06 2.1E-10 75.3 24.3 155 174-347 189-374 (376)
22 TIGR03547 muta_rot_YjhT mutatr 98.7 7.9E-06 1.7E-10 75.0 22.4 116 174-294 168-310 (346)
23 smart00256 FBOX A Receptor for 98.7 2.4E-09 5.2E-14 65.1 -0.6 39 2-40 1-39 (41)
24 PLN02193 nitrile-specifier pro 98.6 1.1E-05 2.3E-10 77.1 20.9 176 93-293 224-421 (470)
25 TIGR03548 mutarot_permut cycli 98.5 4.3E-06 9.3E-11 76.0 16.4 139 185-349 52-202 (323)
26 KOG4693 Uncharacterized conser 98.4 1.4E-05 3.1E-10 67.2 13.8 225 95-352 32-287 (392)
27 KOG1230 Protein containing rep 98.1 0.0001 2.2E-09 65.9 14.6 219 109-353 98-352 (521)
28 KOG4693 Uncharacterized conser 97.9 0.00041 8.9E-09 58.6 12.4 115 172-293 155-287 (392)
29 KOG0379 Kelch repeat-containin 97.6 0.0017 3.6E-08 62.2 14.4 156 175-352 89-260 (482)
30 KOG0379 Kelch repeat-containin 97.4 0.015 3.3E-07 55.7 17.9 168 109-293 139-312 (482)
31 KOG0281 Beta-TrCP (transducin 97.4 0.0064 1.4E-07 53.4 13.3 41 2-42 78-122 (499)
32 KOG2120 SCF ubiquitin ligase, 97.3 5.8E-05 1.2E-09 65.1 -0.2 38 1-38 100-137 (419)
33 PF13964 Kelch_6: Kelch motif 96.8 0.0032 6.8E-08 39.6 4.9 42 200-241 5-47 (50)
34 PF02191 OLF: Olfactomedin-lik 96.6 0.13 2.9E-06 44.5 14.7 133 192-351 64-213 (250)
35 PF01344 Kelch_1: Kelch motif; 96.6 0.0068 1.5E-07 37.4 4.9 41 201-241 6-47 (47)
36 COG3055 Uncharacterized protei 96.2 0.074 1.6E-06 47.3 10.7 119 174-296 113-269 (381)
37 KOG1230 Protein containing rep 96.2 0.11 2.5E-06 47.1 12.0 114 174-291 98-224 (521)
38 smart00284 OLF Olfactomedin-li 96.1 0.37 8.1E-06 41.6 14.5 133 192-351 69-218 (255)
39 KOG2997 F-box protein FBX9 [Ge 95.9 0.0026 5.5E-08 55.3 0.4 43 2-44 110-157 (366)
40 KOG4152 Host cell transcriptio 95.8 0.28 6.1E-06 45.8 12.9 163 109-291 57-247 (830)
41 PF07646 Kelch_2: Kelch motif; 95.4 0.045 9.8E-07 34.1 4.7 41 200-240 5-47 (49)
42 KOG0274 Cdc4 and related F-box 95.1 3.7 8E-05 40.0 20.8 41 2-42 111-151 (537)
43 PF13360 PQQ_2: PQQ-like domai 94.7 2.4 5.2E-05 36.2 16.3 140 175-348 4-147 (238)
44 PF13964 Kelch_6: Kelch motif 94.7 0.11 2.3E-06 32.5 5.0 24 107-130 26-49 (50)
45 PF13418 Kelch_4: Galactose ox 94.4 0.063 1.4E-06 33.4 3.4 41 201-241 6-48 (49)
46 TIGR01640 F_box_assoc_1 F-box 93.8 3.3 7E-05 35.4 14.1 119 204-351 3-137 (230)
47 PF07893 DUF1668: Protein of u 93.2 4.3 9.3E-05 37.2 14.5 112 224-349 87-215 (342)
48 smart00612 Kelch Kelch domain. 93.0 0.23 5E-06 30.1 4.3 35 172-207 13-47 (47)
49 PRK11138 outer membrane biogen 93.0 7.9 0.00017 36.2 18.9 107 201-347 251-359 (394)
50 PF13360 PQQ_2: PQQ-like domai 92.8 5.4 0.00012 33.9 18.4 192 96-348 35-237 (238)
51 smart00612 Kelch Kelch domain. 92.4 0.51 1.1E-05 28.5 5.2 35 209-244 2-37 (47)
52 PF07250 Glyoxal_oxid_N: Glyox 91.9 6.3 0.00014 34.0 12.9 156 173-352 45-210 (243)
53 PF07762 DUF1618: Protein of u 91.9 1.5 3.2E-05 33.9 8.5 75 224-298 7-102 (131)
54 PLN02772 guanylate kinase 91.5 1.5 3.2E-05 40.6 9.1 74 201-279 29-107 (398)
55 PF07893 DUF1668: Protein of u 91.5 11 0.00024 34.5 16.5 131 92-245 71-224 (342)
56 PF13415 Kelch_3: Galactose ox 91.3 0.86 1.9E-05 28.2 5.4 39 206-244 1-41 (49)
57 COG4257 Vgb Streptogramin lyas 90.5 5.5 0.00012 34.7 10.9 123 92-244 194-318 (353)
58 PF01344 Kelch_1: Kelch motif; 89.9 0.65 1.4E-05 28.3 3.9 24 170-194 24-47 (47)
59 PF08450 SGL: SMP-30/Gluconola 85.9 22 0.00047 30.6 25.2 204 95-351 9-223 (246)
60 TIGR03300 assembly_YfgL outer 85.8 29 0.00063 32.0 20.3 107 201-347 236-344 (377)
61 COG1520 FOG: WD40-like repeat 85.7 26 0.00057 32.4 13.5 139 174-348 35-178 (370)
62 PF12458 DUF3686: ATPase invol 84.3 15 0.00032 34.1 10.5 140 96-278 237-384 (448)
63 PRK11138 outer membrane biogen 83.7 38 0.00082 31.6 20.4 190 96-347 119-318 (394)
64 PF13859 BNR_3: BNR repeat-lik 83.0 11 0.00024 33.9 9.3 81 203-289 127-212 (310)
65 PF06433 Me-amine-dh_H: Methyl 82.5 23 0.00051 32.1 11.0 115 206-347 195-326 (342)
66 KOG0647 mRNA export protein (c 81.7 12 0.00025 33.1 8.4 32 323-354 84-115 (347)
67 TIGR03075 PQQ_enz_alc_DH PQQ-d 81.6 35 0.00077 33.4 12.9 122 200-348 63-196 (527)
68 TIGR03074 PQQ_membr_DH membran 80.5 51 0.0011 33.9 13.9 32 200-238 188-221 (764)
69 COG2706 3-carboxymuconate cycl 79.8 47 0.001 30.1 15.3 125 208-349 53-183 (346)
70 KOG4341 F-box protein containi 79.7 0.48 1E-05 43.5 -0.5 36 1-36 74-109 (483)
71 KOG3545 Olfactomedin and relat 79.6 39 0.00085 29.1 11.5 140 184-351 56-212 (249)
72 PF07646 Kelch_2: Kelch motif; 79.2 4.7 0.0001 24.8 4.1 23 170-193 26-48 (49)
73 PF13418 Kelch_4: Galactose ox 79.1 2.7 5.9E-05 25.8 3.0 22 172-194 27-48 (49)
74 KOG4152 Host cell transcriptio 79.1 24 0.00052 33.6 10.1 172 171-354 54-251 (830)
75 PF02897 Peptidase_S9_N: Proly 78.1 61 0.0013 30.4 19.6 121 204-349 285-412 (414)
76 PF01011 PQQ: PQQ enzyme repea 78.0 5.3 0.00012 23.1 3.8 26 324-349 1-26 (38)
77 PF13415 Kelch_3: Galactose ox 77.8 3.2 7E-05 25.5 3.0 29 171-200 16-44 (49)
78 smart00564 PQQ beta-propeller 77.6 6.3 0.00014 21.6 4.0 24 324-347 7-30 (33)
79 cd01207 Ena-Vasp Enabled-VASP- 77.1 12 0.00026 27.9 6.2 45 108-160 8-52 (111)
80 KOG0294 WD40 repeat-containing 76.9 55 0.0012 29.2 11.4 75 203-296 49-127 (362)
81 COG4946 Uncharacterized protei 74.4 81 0.0017 30.0 13.0 127 31-189 259-397 (668)
82 PTZ00334 trans-sialidase; Prov 74.2 28 0.00062 35.4 9.9 81 203-289 267-349 (780)
83 TIGR03300 assembly_YfgL outer 74.2 73 0.0016 29.4 21.2 138 174-345 155-301 (377)
84 COG3055 Uncharacterized protei 74.1 20 0.00044 32.5 7.9 46 172-218 316-361 (381)
85 PF13854 Kelch_5: Kelch motif 71.6 11 0.00024 22.2 4.2 39 194-232 2-41 (42)
86 KOG0289 mRNA splicing factor [ 70.3 95 0.0021 29.1 13.9 107 172-296 367-476 (506)
87 PF13570 PQQ_3: PQQ-like domai 70.1 8.3 0.00018 22.4 3.4 25 201-232 16-40 (40)
88 PF05096 Glu_cyclase_2: Glutam 69.4 78 0.0017 27.7 15.5 142 172-348 66-210 (264)
89 COG4257 Vgb Streptogramin lyas 69.3 81 0.0018 27.8 15.8 223 91-351 66-315 (353)
90 KOG0310 Conserved WD40 repeat- 67.5 1.1E+02 0.0025 28.9 13.7 156 173-365 47-207 (487)
91 PF08450 SGL: SMP-30/Gluconola 66.0 85 0.0018 26.8 13.4 69 206-293 11-79 (246)
92 cd01206 Homer Homer type EVH1 65.5 21 0.00045 26.3 5.1 41 108-159 10-51 (111)
93 KOG1274 WD40 repeat protein [G 65.4 1.7E+02 0.0037 30.2 19.9 145 173-344 75-221 (933)
94 KOG0316 Conserved WD40 repeat- 65.0 90 0.002 26.8 15.2 142 96-278 27-173 (307)
95 KOG2437 Muskelin [Signal trans 61.9 17 0.00037 34.5 5.1 147 113-267 233-394 (723)
96 PF13013 F-box-like_2: F-box-l 61.2 2.3 5E-05 31.6 -0.4 27 1-27 24-50 (109)
97 KOG0649 WD40 repeat protein [G 59.7 1.2E+02 0.0025 26.3 10.5 138 210-365 24-167 (325)
98 PF05096 Glu_cyclase_2: Glutam 59.3 1.2E+02 0.0027 26.5 13.6 112 205-350 54-167 (264)
99 KOG2502 Tub family proteins [G 56.5 6.6 0.00014 35.3 1.6 35 1-35 47-89 (355)
100 PLN00181 protein SPA1-RELATED; 55.8 2.6E+02 0.0055 29.0 22.0 149 107-293 553-705 (793)
101 PF10282 Lactonase: Lactonase, 53.4 1.8E+02 0.0039 26.5 18.3 124 206-350 154-286 (345)
102 cd00216 PQQ_DH Dehydrogenases 52.1 2.3E+02 0.005 27.4 16.2 107 175-290 72-193 (488)
103 KOG4499 Ca2+-binding protein R 50.4 1.7E+02 0.0036 25.3 10.5 45 203-260 219-264 (310)
104 KOG2315 Predicted translation 50.0 2.5E+02 0.0055 27.3 13.9 130 109-277 251-389 (566)
105 TIGR03866 PQQ_ABC_repeats PQQ- 49.0 1.8E+02 0.0038 25.2 22.7 109 224-354 180-293 (300)
106 COG3386 Gluconolactonase [Carb 49.0 2E+02 0.0044 25.9 12.0 32 207-244 37-68 (307)
107 PRK11028 6-phosphogluconolacto 46.5 2.2E+02 0.0047 25.5 16.5 145 170-343 8-158 (330)
108 KOG2437 Muskelin [Signal trans 45.0 42 0.0009 32.1 4.8 134 198-349 262-420 (723)
109 KOG0292 Vesicle coat complex C 44.9 1.3E+02 0.0029 31.0 8.5 78 251-348 208-288 (1202)
110 PF03088 Str_synth: Strictosid 43.2 65 0.0014 22.9 4.6 17 333-349 37-53 (89)
111 cd00200 WD40 WD40 domain, foun 43.1 2E+02 0.0043 24.0 20.6 22 324-345 190-211 (289)
112 PF10282 Lactonase: Lactonase, 41.9 2.7E+02 0.0059 25.3 24.1 153 173-349 165-332 (345)
113 TIGR03032 conserved hypothetic 41.1 1.3E+02 0.0028 27.2 7.0 55 200-268 206-261 (335)
114 COG2706 3-carboxymuconate cycl 40.1 2.9E+02 0.0064 25.2 20.4 152 173-350 166-332 (346)
115 PRK05137 tolB translocation pr 40.0 3.3E+02 0.0071 25.7 21.9 191 107-350 224-421 (435)
116 KOG1963 WD40 repeat protein [G 38.9 4.5E+02 0.0098 27.0 18.0 105 223-348 432-546 (792)
117 PF12768 Rax2: Cortical protei 38.2 2.9E+02 0.0063 24.5 10.6 63 172-240 14-81 (281)
118 PRK04043 tolB translocation pr 37.6 3.6E+02 0.0078 25.5 13.7 102 224-351 214-319 (419)
119 KOG2055 WD40 repeat protein [G 36.7 3.8E+02 0.0083 25.5 17.2 116 203-348 265-381 (514)
120 KOG0321 WD40 repeat-containing 36.1 1.8E+02 0.004 28.7 7.7 54 224-280 75-132 (720)
121 KOG1310 WD40 repeat protein [G 36.0 2.7E+02 0.0059 27.2 8.6 111 95-232 59-179 (758)
122 PRK04792 tolB translocation pr 35.1 4.1E+02 0.0088 25.4 20.5 191 107-350 240-434 (448)
123 KOG3926 F-box proteins [Amino 32.8 18 0.0004 31.3 0.6 36 1-36 204-240 (332)
124 PF13088 BNR_2: BNR repeat-lik 32.8 3.3E+02 0.007 23.5 14.6 112 174-296 134-256 (275)
125 KOG2321 WD40 repeat protein [G 32.7 3.3E+02 0.0071 26.8 8.6 33 90-124 180-212 (703)
126 TIGR03866 PQQ_ABC_repeats PQQ- 31.4 3.4E+02 0.0073 23.3 22.7 188 107-347 51-243 (300)
127 PF14583 Pectate_lyase22: Olig 30.6 4.5E+02 0.0098 24.5 11.0 104 222-348 167-279 (386)
128 PF15408 PH_7: Pleckstrin homo 29.9 11 0.00023 26.3 -1.0 24 16-39 76-99 (104)
129 PRK00178 tolB translocation pr 29.8 4.7E+02 0.01 24.5 20.8 189 108-349 222-414 (430)
130 KOG2321 WD40 repeat protein [G 29.4 5.7E+02 0.012 25.3 9.8 118 207-349 146-266 (703)
131 PF14339 DUF4394: Domain of un 29.2 1.9E+02 0.004 24.9 6.0 55 95-157 36-92 (236)
132 PRK04043 tolB translocation pr 29.1 5E+02 0.011 24.6 22.4 188 108-350 212-409 (419)
133 KOG0295 WD40 repeat-containing 28.6 3.8E+02 0.0082 24.7 7.9 66 261-348 305-371 (406)
134 PF14781 BBS2_N: Ciliary BBSom 27.1 1.6E+02 0.0035 22.8 4.8 22 323-344 63-84 (136)
135 KOG1852 Cell cycle-associated 27.1 14 0.00031 28.8 -0.9 30 12-41 144-175 (223)
136 KOG0279 G protein beta subunit 26.1 4.7E+02 0.01 23.2 14.6 140 106-279 124-263 (315)
137 cd00216 PQQ_DH Dehydrogenases 24.7 6.4E+02 0.014 24.3 9.9 54 203-268 403-458 (488)
138 PF00568 WH1: WH1 domain; Int 24.7 2.9E+02 0.0063 20.4 5.9 39 109-159 16-55 (111)
139 PF02393 US22: US22 like; Int 24.0 1.5E+02 0.0032 22.2 4.3 26 324-349 82-107 (125)
140 PRK04792 tolB translocation pr 23.5 6.5E+02 0.014 24.0 18.8 144 174-348 242-389 (448)
141 PRK13684 Ycf48-like protein; P 23.2 5.7E+02 0.012 23.2 13.5 153 178-363 154-311 (334)
142 PF06058 DCP1: Dcp1-like decap 23.2 1.4E+02 0.003 22.7 3.8 28 326-353 22-49 (122)
143 KOG0319 WD40-repeat-containing 22.8 8.2E+02 0.018 24.9 16.0 192 92-344 25-225 (775)
144 PF11900 DUF3420: Domain of un 22.4 57 0.0012 20.3 1.3 10 1-10 10-19 (49)
145 KOG2139 WD40 repeat protein [G 22.3 4E+02 0.0087 24.6 6.9 50 223-279 218-269 (445)
146 cd00837 EVH1 EVH1 (Enabled, Va 22.1 3.2E+02 0.0069 19.9 6.8 42 108-160 8-49 (104)
147 PF03178 CPSF_A: CPSF A subuni 22.0 5.7E+02 0.012 22.8 15.0 83 251-357 91-175 (321)
148 COG3386 Gluconolactonase [Carb 21.5 6E+02 0.013 22.9 12.3 57 203-268 220-277 (307)
149 COG0823 TolB Periplasmic compo 21.4 4E+02 0.0088 25.3 7.4 74 258-351 248-324 (425)
150 COG4946 Uncharacterized protei 21.3 7.5E+02 0.016 23.9 14.9 141 174-349 287-439 (668)
151 cd00200 WD40 WD40 domain, foun 21.3 4.7E+02 0.01 21.6 20.7 22 324-345 231-253 (289)
152 PF02333 Phytase: Phytase; In 21.2 6.8E+02 0.015 23.4 18.7 153 173-341 77-237 (381)
153 COG5559 Uncharacterized conser 20.9 59 0.0013 20.8 1.1 13 1-13 10-22 (65)
154 TIGR02800 propeller_TolB tol-p 20.3 6.9E+02 0.015 23.1 20.8 197 99-348 204-404 (417)
No 1
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=100.00 E-value=7.6e-35 Score=251.26 Aligned_cols=225 Identities=22% Similarity=0.396 Sum_probs=166.6
Q ss_pred EeeecccEEEeeccCCceEEEEcCCccceeeCCCCCCCCCCCcccceEEEEEeeeCCCCCeEEEEEEeeeCCCcccCCCC
Q 036467 93 SGSCNGLLCISDQSCNEDIFLFNPSTKKYKKLPVPEFDVPTIETTCFTSLGFGYHQADDDYKVIRSIYLYDKPFVDIDSY 172 (369)
Q Consensus 93 ~~s~~GLl~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~ 172 (369)
++|||||||+.. ...++||||+||+++.||+++...... ....++||||+.+++||||++... . .+..
T Consensus 1 ~~sCnGLlc~~~---~~~~~V~NP~T~~~~~LP~~~~~~~~~---~~~~~~~G~d~~~~~YKVv~~~~~-----~-~~~~ 68 (230)
T TIGR01640 1 VVPCDGLICFSY---GKRLVVWNPSTGQSRWLPTPKSRRSNK---ESDTYFLGYDPIEKQYKVLCFSDR-----S-GNRN 68 (230)
T ss_pred CcccceEEEEec---CCcEEEECCCCCCEEecCCCCCccccc---ccceEEEeecccCCcEEEEEEEee-----c-CCCC
Confidence 479999999886 378999999999999999876431110 122679999999999999999761 1 1224
Q ss_pred cceEEEEEcCCCceEEccCCCCeeeccCCcEEECceEEEEeecCCCCCceeEEEEEECCCccee-eeCCCCCcCCCCCce
Q 036467 173 ECEARVYSLASDKWKKINGGIPYHISSRAAVCFNECLIWKASRGLGRGMTVLVVAFDMNREEFK-EIHRPEYKDSHDKCQ 251 (369)
Q Consensus 173 ~~~~~vys~~t~~W~~~~~~~p~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~e~~~-~i~~P~~~~~~~~~~ 251 (369)
...++||++++++||.+....+.......+|++||.+||++....+. ....|++||+++|+|+ .+++|..... ....
T Consensus 69 ~~~~~Vys~~~~~Wr~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~-~~~~IvsFDl~~E~f~~~i~~P~~~~~-~~~~ 146 (230)
T TIGR01640 69 QSEHQVYTLGSNSWRTIECSPPHHPLKSRGVCINGVLYYLAYTLKTN-PDYFIVSFDVSSERFKEFIPLPCGNSD-SVDY 146 (230)
T ss_pred CccEEEEEeCCCCccccccCCCCccccCCeEEECCEEEEEEEECCCC-CcEEEEEEEcccceEeeeeecCccccc-cccc
Confidence 57899999999999999322222222334799999999999765321 1137999999999999 5899976521 1234
Q ss_pred eEEEEECCcEEEEEecCC-CeEEEEEeccCCCCCCeeEEEEEcccccccccccccceeeeeEEeeeccCCCCCCeEEEEE
Q 036467 252 IEVGVFRGEFAMFHMWRE-DRVEIWTMKDFGARESWTRMFVIGRRALINFDNYAFVHLKPVCEMMNLSNGNGKNFLLIEK 330 (369)
Q Consensus 252 ~~l~~~~G~L~~~~~~~~-~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 330 (369)
..|++++|+|+++..... ..++||+|++++.. .|+|+++|+......+ .. ...+.++ .++ |+|++..
T Consensus 147 ~~L~~~~G~L~~v~~~~~~~~~~IWvl~d~~~~-~W~k~~~i~~~~~~~~---~~-~~~~~~~----~~~---g~I~~~~ 214 (230)
T TIGR01640 147 LSLINYKGKLAVLKQKKDTNNFDLWVLNDAGKQ-EWSKLFTVPIPPLPDL---VD-DNFLSGF----TDK---GEIVLCC 214 (230)
T ss_pred eEEEEECCEEEEEEecCCCCcEEEEEECCCCCC-ceeEEEEEcCcchhhh---hh-heeEeEE----eeC---CEEEEEe
Confidence 689999999999988643 56999999998764 4999999996544311 11 1457788 776 8999987
Q ss_pred CC--Ce-EEEEECCCC
Q 036467 331 GD--GE-LILYDFENE 343 (369)
Q Consensus 331 ~~--~~-~~~ydl~~~ 343 (369)
.. .. +++||++++
T Consensus 215 ~~~~~~~~~~y~~~~~ 230 (230)
T TIGR01640 215 EDENPFYIFYYNVGEN 230 (230)
T ss_pred CCCCceEEEEEeccCC
Confidence 64 34 999999975
No 2
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.73 E-value=4.5e-16 Score=126.50 Aligned_cols=152 Identities=22% Similarity=0.418 Sum_probs=105.1
Q ss_pred cEEECceEEEEeecCCCCCceeEEEEEECCCcce-eeeCCCCCcCCCCCceeEEEEE-CCcEEEEEecC-CCeEEEEEec
Q 036467 202 AVCFNECLIWKASRGLGRGMTVLVVAFDMNREEF-KEIHRPEYKDSHDKCQIEVGVF-RGEFAMFHMWR-EDRVEIWTMK 278 (369)
Q Consensus 202 ~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~e~~-~~i~~P~~~~~~~~~~~~l~~~-~G~L~~~~~~~-~~~~~iW~l~ 278 (369)
+|++||.+||++....... ...|++||+.+|+| ..+++|.... .......|++. +|+||++.... ...++||+|+
T Consensus 1 gV~vnG~~hW~~~~~~~~~-~~~IlsFDl~~E~F~~~~~lP~~~~-~~~~~~~L~~v~~~~L~~~~~~~~~~~~~IWvm~ 78 (164)
T PF07734_consen 1 GVFVNGALHWLAYDENNDE-KDFILSFDLSTEKFGRSLPLPFCND-DDDDSVSLSVVRGDCLCVLYQCDETSKIEIWVMK 78 (164)
T ss_pred CEEECCEEEeeEEecCCCC-ceEEEEEeccccccCCEECCCCccC-ccCCEEEEEEecCCEEEEEEeccCCccEEEEEEe
Confidence 4899999999998764321 12799999999999 7889998774 23356677655 67999997643 3479999999
Q ss_pred cCC-CCCCeeEEEEEcccccccccccccceeeeeEEeeeccCCCCCCeEEEEEC-C------CeEEEEECCCCeEEEeEE
Q 036467 279 DFG-ARESWTRMFVIGRRALINFDNYAFVHLKPVCEMMNLSNGNGKNFLLIEKG-D------GELILYDFENEIATDFKI 350 (369)
Q Consensus 279 ~~~-~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~------~~~~~ydl~~~~~~~v~~ 350 (369)
+++ ..++|+|.++|+.......... ...+..+ + .++ +++++..+ . ..++.|+ +++..+++.+
T Consensus 79 ~~~~~~~SWtK~~~i~~~~~~~~~~~---~~~~~~~--i-~~~---~~vlv~~~~~~~~~~~~~i~i~g-~~~~~~~~~~ 148 (164)
T PF07734_consen 79 KYGYGKESWTKLFTIDLPPLPSLFFH---FRNPSFF--I-DEE---KKVLVCCDKETQREEKNKIYIVG-EDGKFIEVDI 148 (164)
T ss_pred eeccCcceEEEEEEEecCCCCCcccc---cccceEE--E-eCC---CeEEEEEcCCCCccceeEEEEEc-CCCEEEEccc
Confidence 875 3789999999997665421100 0122222 0 333 56666542 1 2377888 8888999987
Q ss_pred ecC-CCeeEEeeeeec
Q 036467 351 QRA-PRWFSVTTFVES 365 (369)
Q Consensus 351 ~~~-~~~~~~~~y~~S 365 (369)
... ..+..+..|+||
T Consensus 149 ~~~~~~~~~~~~YvpS 164 (164)
T PF07734_consen 149 EDKSSCWPSICNYVPS 164 (164)
T ss_pred ccCCCCCCCEEEECCC
Confidence 433 357778899998
No 3
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.64 E-value=7.4e-15 Score=114.39 Aligned_cols=116 Identities=20% Similarity=0.445 Sum_probs=84.3
Q ss_pred cEEECceEEEEeecCCCCCceeEEEEEECCCcceeeeCCCCCcCCCCCceeEEEEECCcEEEEEecCC---CeEEEEEec
Q 036467 202 AVCFNECLIWKASRGLGRGMTVLVVAFDMNREEFKEIHRPEYKDSHDKCQIEVGVFRGEFAMFHMWRE---DRVEIWTMK 278 (369)
Q Consensus 202 ~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~l~~~~G~L~~~~~~~~---~~~~iW~l~ 278 (369)
++++||++||++.... .....|++||+.+|+|+.|++|.... .......|.+++|+|+++..... ..++||+|+
T Consensus 1 gicinGvly~~a~~~~--~~~~~IvsFDv~~E~f~~i~~P~~~~-~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLe 77 (129)
T PF08268_consen 1 GICINGVLYWLAWSED--SDNNVIVSFDVRSEKFRFIKLPEDPY-SSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLE 77 (129)
T ss_pred CEEECcEEEeEEEECC--CCCcEEEEEEcCCceEEEEEeeeeec-cccCccEEEEeCCeEEEEEecCCCCcceEEEEEee
Confidence 4799999999998721 22459999999999999999992111 23456789999999999987654 359999999
Q ss_pred cCCCCCCeeEEEEEcccccccccccccceeeeeEEeeeccCCCCCCeEEEEE
Q 036467 279 DFGARESWTRMFVIGRRALINFDNYAFVHLKPVCEMMNLSNGNGKNFLLIEK 330 (369)
Q Consensus 279 ~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 330 (369)
|++. ++|++...+-+...... .......+.++ .+. |+|++..
T Consensus 78 D~~k-~~Wsk~~~~lp~~~~~~--~~~~~~~~~g~----~~~---Geiv~~~ 119 (129)
T PF08268_consen 78 DYEK-QEWSKKHIVLPPSWQHF--VHDCDFSFVGV----TDT---GEIVFAS 119 (129)
T ss_pred cccc-ceEEEEEEECChHHhcc--cCCcEEEEEEE----cCC---CEEEEEE
Confidence 9864 78998866443332111 11235677777 776 8888873
No 4
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=99.61 E-value=2.5e-13 Score=121.43 Aligned_cols=328 Identities=14% Similarity=0.136 Sum_probs=166.7
Q ss_pred CCcHHHHHHHhccCC-ccccceeeecccchhcccCChhhHHHHHhhccCCCCCEEEeecc---ceeeecccccccccccc
Q 036467 1 NLPTDIITDIFTRLP-VKSLIRFKCVSKSMYALVHNKIFIKKHVNRAIHQSDPKLILKNE---FKLFGVEIINDKKLIRA 76 (369)
Q Consensus 1 ~LP~Dll~eIL~rLp-~~~l~r~r~VcK~W~~li~~~~F~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~ 76 (369)
+||+||+..|..||| ..+++|+|+|||+||+.+.... + ..+... .|++++..- ..+.+ + .....+
T Consensus 6 ~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~---~--~~~~~~-~~~~~~~~~~~~~~~~~-~---~~~~~~- 74 (373)
T PLN03215 6 TLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGVG---K--KNPFRT-RPLILFNPINPSETLTD-D---RSYISR- 74 (373)
T ss_pred hCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccccc---c--cCCccc-ccccccCcccCCCCccc-c---cccccc-
Confidence 599999999999997 6699999999999999877421 0 000010 133332210 00000 0 000000
Q ss_pred ccccccccCC-CCce-EEEeeecccEEEeec-cCCceEEEEcCCccceeeCCCCCCCCCCCc-ccceEEEEE-eeeCC--
Q 036467 77 RKLQVPFALS-LEKV-EISGSCNGLLCISDQ-SCNEDIFLFNPSTKKYKKLPVPEFDVPTIE-TTCFTSLGF-GYHQA-- 149 (369)
Q Consensus 77 ~~~~~p~~~~-~~~~-~~~~s~~GLl~~~~~-~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~-~~~~~~~~~-g~d~~-- 149 (369)
....+... -.+. ...++..|+|..... ...+++.+.||+++....+|+-..+..... ......+.+ +.+..
T Consensus 75 --~~~~ls~~~~~r~~~~~~~~~~WLik~~~~~~~~~~~Ll~PLsr~~~~~~~~~lnll~f~v~ei~~~y~l~~~~~~~~ 152 (373)
T PLN03215 75 --PGAFLSRAAFFRVTLSSSPSKGWLIKSDMDVNSGRFHLLNPLSRLPLRHSSESVDLLEFTVSEIREAYQVLDWAKRRE 152 (373)
T ss_pred --ccceeeeeEEEEeecCCCCCCCcEEEEeccccCCccEecCccccCccCCCCccceeeeeEEEEccceEEEEecccccc
Confidence 00000000 0001 011457899987664 255889999999999888875332211100 000011111 11100
Q ss_pred -CCCeEEEEEEeeeCCCcccCCCCcceEEEEE------cCCCceEEccCCCCeeeccCCcEEECceEEEEeecCCCCCce
Q 036467 150 -DDDYKVIRSIYLYDKPFVDIDSYECEARVYS------LASDKWKKINGGIPYHISSRAAVCFNECLIWKASRGLGRGMT 222 (369)
Q Consensus 150 -~~~ykvv~~~~~~~~~~~~~~~~~~~~~vys------~~t~~W~~~~~~~p~~~~~~~~v~~~G~lyw~~~~~~~~~~~ 222 (369)
...|+-+.+... ..+++.....+-|+. ...++|..+ .... .....-++.+|.+|.+...+
T Consensus 153 ~~~~~~~~~~~~~----~~~~~~~~~vl~i~~~g~l~~w~~~~Wt~l-~~~~--~~~~DIi~~kGkfYAvD~~G------ 219 (373)
T PLN03215 153 TRPGYQRSALVKV----KEGDNHRDGVLGIGRDGKINYWDGNVLKAL-KQMG--YHFSDIIVHKGQTYALDSIG------ 219 (373)
T ss_pred cccceeEEEEEEe----ecCCCcceEEEEEeecCcEeeecCCeeeEc-cCCC--ceeeEEEEECCEEEEEcCCC------
Confidence 011321111110 000010111222221 124788888 4322 22344599999999996554
Q ss_pred eEEEEEECCCcceeeeCCCCC--cC-CCCCceeEEEEECCcEEEEEecC----------------CCeEEEEEeccCCCC
Q 036467 223 VLVVAFDMNREEFKEIHRPEY--KD-SHDKCQIEVGVFRGEFAMFHMWR----------------EDRVEIWTMKDFGAR 283 (369)
Q Consensus 223 ~~il~fD~~~e~~~~i~~P~~--~~-~~~~~~~~l~~~~G~L~~~~~~~----------------~~~~~iW~l~~~~~~ 283 (369)
.+.++|.+- +.+.+..+.. .. ........|+|+.|+|++|.... ...++|+.++. ..
T Consensus 220 -~l~~i~~~l-~i~~v~~~i~~~~~~g~~~~~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~--~~ 295 (373)
T PLN03215 220 -IVYWINSDL-EFSRFGTSLDENITDGCWTGDRRFVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDD--EL 295 (373)
T ss_pred -eEEEEecCC-ceeeecceecccccCCcccCceeEEEECCEEEEEEEEccCcccccccccccccceeEEEEEEEcC--CC
Confidence 667777432 2222211111 00 01123568999999999998731 13688898885 34
Q ss_pred CCeeEEEEEcccccccccccccceeeeeEEeeeccCCCCCCeEEEEECCCeEEEEECCCCeEEEeEEecC---CCeeEEe
Q 036467 284 ESWTRMFVIGRRALINFDNYAFVHLKPVCEMMNLSNGNGKNFLLIEKGDGELILYDFENEIATDFKIQRA---PRWFSVT 360 (369)
Q Consensus 284 ~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ydl~~~~~~~v~~~~~---~~~~~~~ 360 (369)
.+|+++.+++...++ ... ....++.+....+-+++.|||..+. ...+||++.++...+...-. ...+ -
T Consensus 296 ~~WveV~sLgd~aLF----lG~--~~s~sv~a~e~pG~k~NcIYFtdd~-~~~v~~~~dg~~~~~~~~~~~~~~~~~--~ 366 (373)
T PLN03215 296 AKWMEVKTLGDNAFV----MAT--DTCFSVLAHEFYGCLPNSIYFTEDT-MPKVFKLDNGNGSSIETTISESSQSSF--E 366 (373)
T ss_pred CcEEEecccCCeEEE----EEC--CccEEEecCCCCCccCCEEEEECCC-cceEEECCCCCccceEeecCccccchh--e
Confidence 679999999876654 110 1122221100101135789887654 48899999999877754321 2233 4
Q ss_pred eeeeccc
Q 036467 361 TFVESLV 367 (369)
Q Consensus 361 ~y~~Slv 367 (369)
.|++|++
T Consensus 367 ~~~~~~~ 373 (373)
T PLN03215 367 MFVPSFL 373 (373)
T ss_pred eeccccC
Confidence 5566654
No 5
>PHA02713 hypothetical protein; Provisional
Probab=99.51 E-value=2.6e-12 Score=124.29 Aligned_cols=217 Identities=12% Similarity=0.109 Sum_probs=142.9
Q ss_pred EEeeecccEEEeecc-----CCceEEEEcCCccceeeCCCCCCCCCCCcccceEEEEEeeeCCCCCeEEEEEEeeeCCCc
Q 036467 92 ISGSCNGLLCISDQS-----CNEDIFLFNPSTKKYKKLPVPEFDVPTIETTCFTSLGFGYHQADDDYKVIRSIYLYDKPF 166 (369)
Q Consensus 92 ~~~s~~GLl~~~~~~-----~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~ 166 (369)
.++..+|.|.+..+. ....++.+||.+++|..+|+++..+.. .....+ + =||..++. +
T Consensus 298 ~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~-----~~~~~~--~-----g~IYviGG-----~ 360 (557)
T PHA02713 298 ASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCR-----FSLAVI--D-----DTIYAIGG-----Q 360 (557)
T ss_pred EEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhc-----eeEEEE--C-----CEEEEECC-----c
Confidence 345556666444321 125688999999999999998865432 111112 1 14555544 1
Q ss_pred ccCCCCcceEEEEEcCCCceEEccCCCCeeeccCCcEEECceEEEEeecCCCC-----------------CceeEEEEEE
Q 036467 167 VDIDSYECEARVYSLASDKWKKINGGIPYHISSRAAVCFNECLIWKASRGLGR-----------------GMTVLVVAFD 229 (369)
Q Consensus 167 ~~~~~~~~~~~vys~~t~~W~~~~~~~p~~~~~~~~v~~~G~lyw~~~~~~~~-----------------~~~~~il~fD 229 (369)
++......+++|++.+++|..+ +.+|........+.++|.||.+++..... .....+.+||
T Consensus 361 -~~~~~~~sve~Ydp~~~~W~~~-~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YD 438 (557)
T PHA02713 361 -NGTNVERTIECYTMGDDKWKML-PDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYD 438 (557)
T ss_pred -CCCCCCceEEEEECCCCeEEEC-CCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEEC
Confidence 1122345799999999999999 88888776666789999999998754210 0124799999
Q ss_pred CCCcceeee-CCCCCcCCCCCceeEEEEECCcEEEEEecCCCe--E-EEEEeccCCCC-CCeeEEEEEcccccccccccc
Q 036467 230 MNREEFKEI-HRPEYKDSHDKCQIEVGVFRGEFAMFHMWREDR--V-EIWTMKDFGAR-ESWTRMFVIGRRALINFDNYA 304 (369)
Q Consensus 230 ~~~e~~~~i-~~P~~~~~~~~~~~~l~~~~G~L~~~~~~~~~~--~-~iW~l~~~~~~-~~W~~~~~i~~~~~~~~~~~~ 304 (369)
+.+++|+.+ ++|... ....+++.+|+||++++..... . .+-..+- .. .+|+.+..++.....
T Consensus 439 P~td~W~~v~~m~~~r-----~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp--~~~~~W~~~~~m~~~r~~------ 505 (557)
T PHA02713 439 TVNNIWETLPNFWTGT-----IRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNT--NTYNGWELITTTESRLSA------ 505 (557)
T ss_pred CCCCeEeecCCCCccc-----ccCcEEEECCEEEEEeCCCCCCccceeEEEecC--CCCCCeeEccccCccccc------
Confidence 999999988 555543 3456789999999998764211 1 1233332 33 479998877653321
Q ss_pred cceeeeeEEeeeccCCCCCCeEEEEECCC---eEEEEECCCCeEEEeEEec
Q 036467 305 FVHLKPVCEMMNLSNGNGKNFLLIEKGDG---ELILYDFENEIATDFKIQR 352 (369)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~ydl~~~~~~~v~~~~ 352 (369)
.....+ + |+|++..+.. .+-.||++|++|..+.-+.
T Consensus 506 ---~~~~~~------~---~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~~ 544 (557)
T PHA02713 506 ---LHTILH------D---NTIMMLHCYESYMLQDTFNVYTYEWNHICHQH 544 (557)
T ss_pred ---ceeEEE------C---CEEEEEeeecceeehhhcCcccccccchhhhc
Confidence 222222 3 7898876522 3899999999999986544
No 6
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.45 E-value=9e-12 Score=120.18 Aligned_cols=216 Identities=14% Similarity=0.152 Sum_probs=146.7
Q ss_pred EEEeeecccEEEeecc-----CCceEEEEcCCccceeeCCCCCCCCCCCcccceEEEEEeeeCCCCCeEEEEEEeeeCCC
Q 036467 91 EISGSCNGLLCISDQS-----CNEDIFLFNPSTKKYKKLPVPEFDVPTIETTCFTSLGFGYHQADDDYKVIRSIYLYDKP 165 (369)
Q Consensus 91 ~~~~s~~GLl~~~~~~-----~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~ 165 (369)
..++..+|.|....+. ..+.+..+||.+++|..+|++...+.. ++.+. -..++.+++.
T Consensus 326 ~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~--------~~v~~----l~g~iYavGG----- 388 (571)
T KOG4441|consen 326 VGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSD--------FGVAV----LDGKLYAVGG----- 388 (571)
T ss_pred ccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCcccc--------ceeEE----ECCEEEEEec-----
Confidence 3555666666554431 335789999999999999999875432 12211 1235555544
Q ss_pred cccCCCCcceEEEEEcCCCceEEccCCCCeeeccCCcEEECceEEEEeecCCCCCceeEEEEEECCCcceeee-CCCCCc
Q 036467 166 FVDIDSYECEARVYSLASDKWKKINGGIPYHISSRAAVCFNECLIWKASRGLGRGMTVLVVAFDMNREEFKEI-HRPEYK 244 (369)
Q Consensus 166 ~~~~~~~~~~~~vys~~t~~W~~~~~~~p~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~e~~~~i-~~P~~~ 244 (369)
+ ++......+|.|++.++.|..+ +.|+........+.++|.||.+++..........+.+||+.+++|+.+ +++...
T Consensus 389 ~-dg~~~l~svE~YDp~~~~W~~v-a~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R 466 (571)
T KOG4441|consen 389 F-DGEKSLNSVECYDPVTNKWTPV-APMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRR 466 (571)
T ss_pred c-ccccccccEEEecCCCCccccc-CCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccccc
Confidence 1 1334556899999999999999 778776555666999999999998765443456999999999999998 677665
Q ss_pred CCCCCceeEEEEECCcEEEEEecCCCeEEEEEeccCC-CCCCeeEEEEEcccccccccccccceeeeeEEeeeccCCCCC
Q 036467 245 DSHDKCQIEVGVFRGEFAMFHMWREDRVEIWTMKDFG-ARESWTRMFVIGRRALINFDNYAFVHLKPVCEMMNLSNGNGK 323 (369)
Q Consensus 245 ~~~~~~~~~l~~~~G~L~~~~~~~~~~~~iW~l~~~~-~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (369)
....+++.+|+||++++++. .-.+-..+-|+ ....|..+..+..... ..+++ .-+
T Consensus 467 -----~~~g~a~~~~~iYvvGG~~~-~~~~~~VE~ydp~~~~W~~v~~m~~~rs------------~~g~~---~~~--- 522 (571)
T KOG4441|consen 467 -----SGFGVAVLNGKIYVVGGFDG-TSALSSVERYDPETNQWTMVAPMTSPRS------------AVGVV---VLG--- 522 (571)
T ss_pred -----ccceEEEECCEEEEECCccC-CCccceEEEEcCCCCceeEcccCccccc------------cccEE---EEC---
Confidence 45668999999999998764 11111122222 4467999855554332 12220 113
Q ss_pred CeEEEEECC------CeEEEEECCCCeEEEeE
Q 036467 324 NFLLIEKGD------GELILYDFENEIATDFK 349 (369)
Q Consensus 324 ~~i~~~~~~------~~~~~ydl~~~~~~~v~ 349 (369)
+++|++.+. ..+-.||+++++|+.+.
T Consensus 523 ~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~ 554 (571)
T KOG4441|consen 523 GKLYAVGGFDGNNNLNTVECYDPETDTWTEVT 554 (571)
T ss_pred CEEEEEecccCccccceeEEcCCCCCceeeCC
Confidence 678887642 23899999999999874
No 7
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.40 E-value=3.2e-11 Score=116.42 Aligned_cols=200 Identities=11% Similarity=0.062 Sum_probs=143.1
Q ss_pred CceEEEEcCCccceeeCCCCCCCCCCCcccceEEEEEeeeCCCCCeEEEEEEeeeCCCcccCCCCcceEEEEEcCCCceE
Q 036467 108 NEDIFLFNPSTKKYKKLPVPEFDVPTIETTCFTSLGFGYHQADDDYKVIRSIYLYDKPFVDIDSYECEARVYSLASDKWK 187 (369)
Q Consensus 108 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~vys~~t~~W~ 187 (369)
...+..+||.+++|..+.+++..+.. .....++ + +|..++. +..+......+++|++.++.|.
T Consensus 300 ~~~ve~yd~~~~~w~~~a~m~~~r~~-----~~~~~~~------~-~lYv~GG-----~~~~~~~l~~ve~YD~~~~~W~ 362 (571)
T KOG4441|consen 300 LRSVECYDPKTNEWSSLAPMPSPRCR-----VGVAVLN------G-KLYVVGG-----YDSGSDRLSSVERYDPRTNQWT 362 (571)
T ss_pred cceeEEecCCcCcEeecCCCCccccc-----ccEEEEC------C-EEEEEcc-----ccCCCcccceEEEecCCCCcee
Confidence 35678999999999999999865432 1111111 1 5555544 1112345678999999999999
Q ss_pred EccCCCCeeeccCCcEEECceEEEEeecCCCCCceeEEEEEECCCcceeee-CCCCCcCCCCCceeEEEEECCcEEEEEe
Q 036467 188 KINGGIPYHISSRAAVCFNECLIWKASRGLGRGMTVLVVAFDMNREEFKEI-HRPEYKDSHDKCQIEVGVFRGEFAMFHM 266 (369)
Q Consensus 188 ~~~~~~p~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~e~~~~i-~~P~~~~~~~~~~~~l~~~~G~L~~~~~ 266 (369)
.+ +.|+........+.++|.+|.+++.+. ......+..||+.+++|+.+ +++... .....++.+|+||++.+
T Consensus 363 ~~-a~M~~~R~~~~v~~l~g~iYavGG~dg-~~~l~svE~YDp~~~~W~~va~m~~~r-----~~~gv~~~~g~iYi~GG 435 (571)
T KOG4441|consen 363 PV-APMNTKRSDFGVAVLDGKLYAVGGFDG-EKSLNSVECYDPVTNKWTPVAPMLTRR-----SGHGVAVLGGKLYIIGG 435 (571)
T ss_pred cc-CCccCccccceeEEECCEEEEEecccc-ccccccEEEecCCCCcccccCCCCcce-----eeeEEEEECCEEEEEcC
Confidence 98 888877666667999999999998873 33345899999999999998 577644 56788999999999998
Q ss_pred cCCCeEEEEEeccCC-CCCCeeEEEEEcccccccccccccceeeeeEEeeeccCCCCCCeEEEEECCC------eEEEEE
Q 036467 267 WREDRVEIWTMKDFG-ARESWTRMFVIGRRALINFDNYAFVHLKPVCEMMNLSNGNGKNFLLIEKGDG------ELILYD 339 (369)
Q Consensus 267 ~~~~~~~iW~l~~~~-~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~yd 339 (369)
.....-.+=..+-|+ ...+|+.+..|..... ...+++ . + +.||.+.+.. .+-.||
T Consensus 436 ~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~----------~~g~a~----~-~---~~iYvvGG~~~~~~~~~VE~yd 497 (571)
T KOG4441|consen 436 GDGSSNCLNSVECYDPETNTWTLIAPMNTRRS----------GFGVAV----L-N---GKIYVVGGFDGTSALSSVERYD 497 (571)
T ss_pred cCCCccccceEEEEcCCCCceeecCCcccccc----------cceEEE----E-C---CEEEEECCccCCCccceEEEEc
Confidence 754332333444443 4578999988876543 122333 3 3 7888876532 389999
Q ss_pred CCCCeEEEeE
Q 036467 340 FENEIATDFK 349 (369)
Q Consensus 340 l~~~~~~~v~ 349 (369)
+++++|..+.
T Consensus 498 p~~~~W~~v~ 507 (571)
T KOG4441|consen 498 PETNQWTMVA 507 (571)
T ss_pred CCCCceeEcc
Confidence 9999999995
No 8
>PHA02713 hypothetical protein; Provisional
Probab=99.37 E-value=9.5e-11 Score=113.46 Aligned_cols=197 Identities=7% Similarity=0.033 Sum_probs=129.2
Q ss_pred ceEEEEcCCccceeeCCCCCCCCCCCcccceEEEEEeeeCCCCCeEEEEEEeeeCCCcccCCCCcceEEEEEcCCCceEE
Q 036467 109 EDIFLFNPSTKKYKKLPVPEFDVPTIETTCFTSLGFGYHQADDDYKVIRSIYLYDKPFVDIDSYECEARVYSLASDKWKK 188 (369)
Q Consensus 109 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~vys~~t~~W~~ 188 (369)
..+..+||.+++|..+++++..+.. ...+.+ + =+|..++. ..........++.|++.++.|..
T Consensus 272 ~~v~~yd~~~~~W~~l~~mp~~r~~-----~~~a~l--~-----~~IYviGG-----~~~~~~~~~~v~~Yd~~~n~W~~ 334 (557)
T PHA02713 272 PCILVYNINTMEYSVISTIPNHIIN-----YASAIV--D-----NEIIIAGG-----YNFNNPSLNKVYKINIENKIHVE 334 (557)
T ss_pred CCEEEEeCCCCeEEECCCCCccccc-----eEEEEE--C-----CEEEEEcC-----CCCCCCccceEEEEECCCCeEee
Confidence 3578899999999999988764321 111111 1 14444443 10011234678999999999999
Q ss_pred ccCCCCeeeccCCcEEECceEEEEeecCCCCCceeEEEEEECCCcceeee-CCCCCcCCCCCceeEEEEECCcEEEEEec
Q 036467 189 INGGIPYHISSRAAVCFNECLIWKASRGLGRGMTVLVVAFDMNREEFKEI-HRPEYKDSHDKCQIEVGVFRGEFAMFHMW 267 (369)
Q Consensus 189 ~~~~~p~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~e~~~~i-~~P~~~~~~~~~~~~l~~~~G~L~~~~~~ 267 (369)
+ +.+|........+.++|.+|.+++..... ....+.+||+.+++|+.+ ++|... .....++++|+||++++.
T Consensus 335 ~-~~m~~~R~~~~~~~~~g~IYviGG~~~~~-~~~sve~Ydp~~~~W~~~~~mp~~r-----~~~~~~~~~g~IYviGG~ 407 (557)
T PHA02713 335 L-PPMIKNRCRFSLAVIDDTIYAIGGQNGTN-VERTIECYTMGDDKWKMLPDMPIAL-----SSYGMCVLDQYIYIIGGR 407 (557)
T ss_pred C-CCCcchhhceeEEEECCEEEEECCcCCCC-CCceEEEEECCCCeEEECCCCCccc-----ccccEEEECCEEEEEeCC
Confidence 9 88887666666699999999999865321 234799999999999998 666554 345677899999999875
Q ss_pred CCC--------------------eEEEEEeccCCCCCCeeEEEEEcccccccccccccceeeeeEEeeeccCCCCCCeEE
Q 036467 268 RED--------------------RVEIWTMKDFGARESWTRMFVIGRRALINFDNYAFVHLKPVCEMMNLSNGNGKNFLL 327 (369)
Q Consensus 268 ~~~--------------------~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 327 (369)
... .-.+...+- ...+|+.+..++..... .. ..+ . + |+||
T Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP--~td~W~~v~~m~~~r~~---------~~-~~~----~-~---~~IY 467 (557)
T PHA02713 408 TEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDT--VNNIWETLPNFWTGTIR---------PG-VVS----H-K---DDIY 467 (557)
T ss_pred CcccccccccccccccccccccccceEEEECC--CCCeEeecCCCCccccc---------Cc-EEE----E-C---CEEE
Confidence 421 112333332 34679877665443221 11 222 2 3 7888
Q ss_pred EEECC-------CeEEEEECCC-CeEEEeE
Q 036467 328 IEKGD-------GELILYDFEN-EIATDFK 349 (369)
Q Consensus 328 ~~~~~-------~~~~~ydl~~-~~~~~v~ 349 (369)
+..+. ..+..||+++ ++|+.+.
T Consensus 468 v~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~ 497 (557)
T PHA02713 468 VVCDIKDEKNVKTCIFRYNTNTYNGWELIT 497 (557)
T ss_pred EEeCCCCCCccceeEEEecCCCCCCeeEcc
Confidence 87642 1267999999 8999874
No 9
>PHA03098 kelch-like protein; Provisional
Probab=99.36 E-value=1.6e-10 Score=112.43 Aligned_cols=197 Identities=13% Similarity=0.116 Sum_probs=130.2
Q ss_pred ceEEEEcCCccceeeCCCCCCCCCCCcccceEEEEEeeeCCCCCeEEEEEEeeeCCCcccCCCCcceEEEEEcCCCceEE
Q 036467 109 EDIFLFNPSTKKYKKLPVPEFDVPTIETTCFTSLGFGYHQADDDYKVIRSIYLYDKPFVDIDSYECEARVYSLASDKWKK 188 (369)
Q Consensus 109 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~vys~~t~~W~~ 188 (369)
.+++.+||.|++|..+|+++.++.. ...+.+ + =++..++. . +.......+++|+..+++|+.
T Consensus 311 ~~v~~yd~~~~~W~~~~~~~~~R~~-----~~~~~~--~-----~~lyv~GG-----~-~~~~~~~~v~~yd~~~~~W~~ 372 (534)
T PHA03098 311 NSVVSYDTKTKSWNKVPELIYPRKN-----PGVTVF--N-----NRIYVIGG-----I-YNSISLNTVESWKPGESKWRE 372 (534)
T ss_pred ccEEEEeCCCCeeeECCCCCccccc-----ceEEEE--C-----CEEEEEeC-----C-CCCEecceEEEEcCCCCceee
Confidence 4789999999999999988754432 111111 1 13444443 1 112234578999999999999
Q ss_pred ccCCCCeeeccCCcEEECceEEEEeecCCCCCceeEEEEEECCCcceeee-CCCCCcCCCCCceeEEEEECCcEEEEEec
Q 036467 189 INGGIPYHISSRAAVCFNECLIWKASRGLGRGMTVLVVAFDMNREEFKEI-HRPEYKDSHDKCQIEVGVFRGEFAMFHMW 267 (369)
Q Consensus 189 ~~~~~p~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~e~~~~i-~~P~~~~~~~~~~~~l~~~~G~L~~~~~~ 267 (369)
. +.+|........+.++|.+|.+++..........+..||+.+++|+.+ ++|... .....+..+|+|+++++.
T Consensus 373 ~-~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r-----~~~~~~~~~~~iyv~GG~ 446 (534)
T PHA03098 373 E-PPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISH-----YGGCAIYHDGKIYVIGGI 446 (534)
T ss_pred C-CCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccc-----cCceEEEECCEEEEECCc
Confidence 8 777776555556889999999988543222235789999999999998 556543 234567789999999875
Q ss_pred CCC-----eEEEEEeccCCCCCCeeEEEEEcccccccccccccceeeeeEEeeeccCCCCCCeEEEEECC------CeEE
Q 036467 268 RED-----RVEIWTMKDFGARESWTRMFVIGRRALINFDNYAFVHLKPVCEMMNLSNGNGKNFLLIEKGD------GELI 336 (369)
Q Consensus 268 ~~~-----~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~------~~~~ 336 (369)
... .-.+|..+- ...+|+.+..++.... .....+ . + ++|++..+. ..+.
T Consensus 447 ~~~~~~~~~~~v~~yd~--~~~~W~~~~~~~~~r~----------~~~~~~----~-~---~~iyv~GG~~~~~~~~~v~ 506 (534)
T PHA03098 447 SYIDNIKVYNIVESYNP--VTNKWTELSSLNFPRI----------NASLCI----F-N---NKIYVVGGDKYEYYINEIE 506 (534)
T ss_pred cCCCCCcccceEEEecC--CCCceeeCCCCCcccc----------cceEEE----E-C---CEEEEEcCCcCCcccceeE
Confidence 321 123667664 3467998754432211 111222 2 3 678876542 2489
Q ss_pred EEECCCCeEEEeE
Q 036467 337 LYDFENEIATDFK 349 (369)
Q Consensus 337 ~ydl~~~~~~~v~ 349 (369)
.||+++++|+.+.
T Consensus 507 ~yd~~~~~W~~~~ 519 (534)
T PHA03098 507 VYDDKTNTWTLFC 519 (534)
T ss_pred EEeCCCCEEEecC
Confidence 9999999999874
No 10
>PHA02790 Kelch-like protein; Provisional
Probab=99.31 E-value=5.6e-10 Score=106.52 Aligned_cols=183 Identities=9% Similarity=-0.000 Sum_probs=123.4
Q ss_pred ceEEEEcCCccceeeCCCCCCCCCCCcccceEEEEEeeeCCCCCeEEEEEEeeeCCCcccCCCCcceEEEEEcCCCceEE
Q 036467 109 EDIFLFNPSTKKYKKLPVPEFDVPTIETTCFTSLGFGYHQADDDYKVIRSIYLYDKPFVDIDSYECEARVYSLASDKWKK 188 (369)
Q Consensus 109 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~vys~~t~~W~~ 188 (369)
..+..+||.+++|..+|+++.++.. ...+.+ + =++..++. . .....++.|+..+++|..
T Consensus 287 ~~v~~Ydp~~~~W~~~~~m~~~r~~-----~~~v~~--~-----~~iYviGG-----~----~~~~sve~ydp~~n~W~~ 345 (480)
T PHA02790 287 NNAIAVNYISNNWIPIPPMNSPRLY-----ASGVPA--N-----NKLYVVGG-----L----PNPTSVERWFHGDAAWVN 345 (480)
T ss_pred CeEEEEECCCCEEEECCCCCchhhc-----ceEEEE--C-----CEEEEECC-----c----CCCCceEEEECCCCeEEE
Confidence 4678899999999999998764422 111111 1 24444443 1 112458999999999999
Q ss_pred ccCCCCeeeccCCcEEECceEEEEeecCCCCCceeEEEEEECCCcceeee-CCCCCcCCCCCceeEEEEECCcEEEEEec
Q 036467 189 INGGIPYHISSRAAVCFNECLIWKASRGLGRGMTVLVVAFDMNREEFKEI-HRPEYKDSHDKCQIEVGVFRGEFAMFHMW 267 (369)
Q Consensus 189 ~~~~~p~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~e~~~~i-~~P~~~~~~~~~~~~l~~~~G~L~~~~~~ 267 (369)
+ +.+|........+.++|.||.+++.... ...+..||+.+++|+.+ ++|... .....++.+|+|+++++.
T Consensus 346 ~-~~l~~~r~~~~~~~~~g~IYviGG~~~~---~~~ve~ydp~~~~W~~~~~m~~~r-----~~~~~~~~~~~IYv~GG~ 416 (480)
T PHA02790 346 M-PSLLKPRCNPAVASINNVIYVIGGHSET---DTTTEYLLPNHDQWQFGPSTYYPH-----YKSCALVFGRRLFLVGRN 416 (480)
T ss_pred C-CCCCCCCcccEEEEECCEEEEecCcCCC---CccEEEEeCCCCEEEeCCCCCCcc-----ccceEEEECCEEEEECCc
Confidence 9 8888766666668999999999986532 13688999999999998 444433 245677899999999752
Q ss_pred CCCeEEEEEeccCCCCCCeeEEEEEcccccccccccccceeeeeEEeeeccCCCCCCeEEEEECC------CeEEEEECC
Q 036467 268 REDRVEIWTMKDFGARESWTRMFVIGRRALINFDNYAFVHLKPVCEMMNLSNGNGKNFLLIEKGD------GELILYDFE 341 (369)
Q Consensus 268 ~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~------~~~~~ydl~ 341 (369)
.+++-. ....|+.+..++.... ... ..+ . + |+|+++.+. ..+..||++
T Consensus 417 ----~e~ydp----~~~~W~~~~~m~~~r~---------~~~-~~v----~-~---~~IYviGG~~~~~~~~~ve~Yd~~ 470 (480)
T PHA02790 417 ----AEFYCE----SSNTWTLIDDPIYPRD---------NPE-LII----V-D---NKLLLIGGFYRGSYIDTIEVYNNR 470 (480)
T ss_pred ----eEEecC----CCCcEeEcCCCCCCcc---------ccE-EEE----E-C---CEEEEECCcCCCcccceEEEEECC
Confidence 233222 3467998776543222 111 222 2 3 688887642 248899999
Q ss_pred CCeEEE
Q 036467 342 NEIATD 347 (369)
Q Consensus 342 ~~~~~~ 347 (369)
+++|+.
T Consensus 471 ~~~W~~ 476 (480)
T PHA02790 471 TYSWNI 476 (480)
T ss_pred CCeEEe
Confidence 999975
No 11
>PLN02153 epithiospecifier protein
Probab=99.23 E-value=3e-09 Score=97.35 Aligned_cols=209 Identities=12% Similarity=0.131 Sum_probs=122.8
Q ss_pred ceEEEEcCCccceeeCCCCCCCCCCCcccceEEEEEeeeCCCCCeEEEEEEeeeCCCcccCCCCcceEEEEEcCCCceEE
Q 036467 109 EDIFLFNPSTKKYKKLPVPEFDVPTIETTCFTSLGFGYHQADDDYKVIRSIYLYDKPFVDIDSYECEARVYSLASDKWKK 188 (369)
Q Consensus 109 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~vys~~t~~W~~ 188 (369)
.+++++||.+++|..+|++......... ....+.++ =+++.+.. . ........+++|++.+++|+.
T Consensus 50 ~~~~~yd~~~~~W~~~~~~~~~p~~~~~-~~~~~~~~-------~~iyv~GG-----~-~~~~~~~~v~~yd~~t~~W~~ 115 (341)
T PLN02153 50 KDLYVFDFNTHTWSIAPANGDVPRISCL-GVRMVAVG-------TKLYIFGG-----R-DEKREFSDFYSYDTVKNEWTF 115 (341)
T ss_pred CcEEEEECCCCEEEEcCccCCCCCCccC-ceEEEEEC-------CEEEEECC-----C-CCCCccCcEEEEECCCCEEEE
Confidence 4799999999999999875422111000 01111111 14444443 1 111223578999999999998
Q ss_pred ccCCC-----CeeeccCCcEEECceEEEEeecCCCC-----CceeEEEEEECCCcceeeeCCCCCcCCCCCceeEEEEEC
Q 036467 189 INGGI-----PYHISSRAAVCFNECLIWKASRGLGR-----GMTVLVVAFDMNREEFKEIHRPEYKDSHDKCQIEVGVFR 258 (369)
Q Consensus 189 ~~~~~-----p~~~~~~~~v~~~G~lyw~~~~~~~~-----~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~l~~~~ 258 (369)
+ ..+ |.....+..+..+|.||.+++..... .....+.+||+.+.+|+.++.+.... .......++..+
T Consensus 116 ~-~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~-~~r~~~~~~~~~ 193 (341)
T PLN02153 116 L-TKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENF-EKRGGAGFAVVQ 193 (341)
T ss_pred e-ccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCC-CCCCcceEEEEC
Confidence 8 554 44444445588999999998864211 01236889999999999885432110 011334567889
Q ss_pred CcEEEEEecCC----------CeEEEEEeccCCCCCCeeEEEEEcccccccccccccceeeeeEEeeeccCCCCCCeEEE
Q 036467 259 GEFAMFHMWRE----------DRVEIWTMKDFGARESWTRMFVIGRRALINFDNYAFVHLKPVCEMMNLSNGNGKNFLLI 328 (369)
Q Consensus 259 G~L~~~~~~~~----------~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 328 (369)
|+|+++..... ..-++++++- ...+|+++......+.. ........ . + ++||+
T Consensus 194 ~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~--~~~~W~~~~~~g~~P~~------r~~~~~~~-----~-~---~~iyv 256 (341)
T PLN02153 194 GKIWVVYGFATSILPGGKSDYESNAVQFFDP--ASGKWTEVETTGAKPSA------RSVFAHAV-----V-G---KYIII 256 (341)
T ss_pred CeEEEEeccccccccCCccceecCceEEEEc--CCCcEEeccccCCCCCC------cceeeeEE-----E-C---CEEEE
Confidence 99999865321 1124666654 34679988654321111 00111111 2 2 57777
Q ss_pred EECC---------------CeEEEEECCCCeEEEeEE
Q 036467 329 EKGD---------------GELILYDFENEIATDFKI 350 (369)
Q Consensus 329 ~~~~---------------~~~~~ydl~~~~~~~v~~ 350 (369)
..+. ..++.||+++++|+.+..
T Consensus 257 ~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~ 293 (341)
T PLN02153 257 FGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGE 293 (341)
T ss_pred ECcccCCccccccccccccccEEEEEcCccEEEeccC
Confidence 6542 148999999999998864
No 12
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.21 E-value=6.4e-09 Score=95.44 Aligned_cols=229 Identities=9% Similarity=0.056 Sum_probs=127.9
Q ss_pred eecccEEEeeccCCceEEEEcC--CccceeeCCCCCCCCCCCcccceEEEEEeeeCCCCCeEEEEEEeeeCCCcccCCCC
Q 036467 95 SCNGLLCISDQSCNEDIFLFNP--STKKYKKLPVPEFDVPTIETTCFTSLGFGYHQADDDYKVIRSIYLYDKPFVDIDSY 172 (369)
Q Consensus 95 s~~GLl~~~~~~~~~~~~V~NP--~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~ 172 (369)
..++-|.+........++++++ .+++|..+|+++...+. ......+ + =+|..+..............
T Consensus 15 ~~~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~----~~~~~~~--~-----~~iYv~GG~~~~~~~~~~~~ 83 (346)
T TIGR03547 15 IIGDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRN----QAVAAAI--D-----GKLYVFGGIGKANSEGSPQV 83 (346)
T ss_pred EECCEEEEEccccCCeeEEEECCCCCCCceECCCCCCCCcc----cceEEEE--C-----CEEEEEeCCCCCCCCCccee
Confidence 4455554443223356788874 68899999988632111 1111111 1 14544443100000000012
Q ss_pred cceEEEEEcCCCceEEccCCCCeeeccCCcE-EECceEEEEeecCCCC--------------------------------
Q 036467 173 ECEARVYSLASDKWKKINGGIPYHISSRAAV-CFNECLIWKASRGLGR-------------------------------- 219 (369)
Q Consensus 173 ~~~~~vys~~t~~W~~~~~~~p~~~~~~~~v-~~~G~lyw~~~~~~~~-------------------------------- 219 (369)
...+++|+..+++|+.+...+|........+ ..+|.||.+++.....
T Consensus 84 ~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (346)
T TIGR03547 84 FDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPED 163 (346)
T ss_pred cccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhH
Confidence 3578999999999999822233333222234 6899999998754210
Q ss_pred -CceeEEEEEECCCcceeee-CCCCCcCCCCCceeEEEEECCcEEEEEecCC---CeEEEEEeccCCCCCCeeEEEEEcc
Q 036467 220 -GMTVLVVAFDMNREEFKEI-HRPEYKDSHDKCQIEVGVFRGEFAMFHMWRE---DRVEIWTMKDFGARESWTRMFVIGR 294 (369)
Q Consensus 220 -~~~~~il~fD~~~e~~~~i-~~P~~~~~~~~~~~~l~~~~G~L~~~~~~~~---~~~~iW~l~~~~~~~~W~~~~~i~~ 294 (369)
.....+.+||+.+++|+.+ ++|... .....++..+|+|+++..... ...++|..+-......|+++..++.
T Consensus 164 ~~~~~~v~~YDp~t~~W~~~~~~p~~~----r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~ 239 (346)
T TIGR03547 164 YFWNKNVLSYDPSTNQWRNLGENPFLG----TAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPP 239 (346)
T ss_pred cCccceEEEEECCCCceeECccCCCCc----CCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCC
Confidence 0014799999999999998 566422 134567888999999987532 2345665542113357998876654
Q ss_pred cccccccccccceeeeeEEeeeccCCCCCCeEEEEECC-----------------------CeEEEEECCCCeEEEeE
Q 036467 295 RALINFDNYAFVHLKPVCEMMNLSNGNGKNFLLIEKGD-----------------------GELILYDFENEIATDFK 349 (369)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----------------------~~~~~ydl~~~~~~~v~ 349 (369)
.... .. ... .....+ .-+ ++|++..+. ..+-.||+++++|+.+.
T Consensus 240 ~r~~-~~-~~~--~~~~a~----~~~---~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~ 306 (346)
T TIGR03547 240 PKSS-SQ-EGL--AGAFAG----ISN---GVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVG 306 (346)
T ss_pred CCCC-cc-ccc--cEEeee----EEC---CEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccC
Confidence 3210 00 000 010111 113 678776542 13679999999998874
No 13
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.14 E-value=3.7e-08 Score=89.47 Aligned_cols=157 Identities=13% Similarity=0.151 Sum_probs=99.9
Q ss_pred eEEEE-cCCcc-ceeeCCCCCCCCCCCcccceEEEEEeeeCCCCCeEEEEEEeeeCCCcccCCCCcceEEEEEcCCCce-
Q 036467 110 DIFLF-NPSTK-KYKKLPVPEFDVPTIETTCFTSLGFGYHQADDDYKVIRSIYLYDKPFVDIDSYECEARVYSLASDKW- 186 (369)
Q Consensus 110 ~~~V~-NP~T~-~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~vys~~t~~W- 186 (369)
++++. +|..+ +|..+++++.++.. ...+ ..+ + ++..+.. . +.......++.|++.++.|
T Consensus 40 ~v~~~~~~~~~~~W~~~~~lp~~r~~-----~~~~--~~~----~-~lyviGG-----~-~~~~~~~~v~~~d~~~~~w~ 101 (323)
T TIGR03548 40 GIYIAKDENSNLKWVKDGQLPYEAAY-----GASV--SVE----N-GIYYIGG-----S-NSSERFSSVYRITLDESKEE 101 (323)
T ss_pred eeEEEecCCCceeEEEcccCCccccc-----eEEE--EEC----C-EEEEEcC-----C-CCCCCceeEEEEEEcCCcee
Confidence 56666 45433 79998877654321 1111 111 1 3444433 1 1122345788999999887
Q ss_pred ---EEccCCCCeeeccCCcEEECceEEEEeecCCCCCceeEEEEEECCCcceeee-CCCCCcCCCCCceeEEEEECCcEE
Q 036467 187 ---KKINGGIPYHISSRAAVCFNECLIWKASRGLGRGMTVLVVAFDMNREEFKEI-HRPEYKDSHDKCQIEVGVFRGEFA 262 (369)
Q Consensus 187 ---~~~~~~~p~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~e~~~~i-~~P~~~~~~~~~~~~l~~~~G~L~ 262 (369)
+.+ +.+|........+.++|.||.+++..... ....+.+||+.+++|+.+ ++|...+ ....++..+|+|+
T Consensus 102 ~~~~~~-~~lp~~~~~~~~~~~~~~iYv~GG~~~~~-~~~~v~~yd~~~~~W~~~~~~p~~~r----~~~~~~~~~~~iY 175 (323)
T TIGR03548 102 LICETI-GNLPFTFENGSACYKDGTLYVGGGNRNGK-PSNKSYLFNLETQEWFELPDFPGEPR----VQPVCVKLQNELY 175 (323)
T ss_pred eeeeEc-CCCCcCccCceEEEECCEEEEEeCcCCCc-cCceEEEEcCCCCCeeECCCCCCCCC----CcceEEEECCEEE
Confidence 666 67777665556688999999998753221 234789999999999998 4664321 2345678899999
Q ss_pred EEEecCC-CeEEEEEeccCCCCCCeeEEEEE
Q 036467 263 MFHMWRE-DRVEIWTMKDFGARESWTRMFVI 292 (369)
Q Consensus 263 ~~~~~~~-~~~~iW~l~~~~~~~~W~~~~~i 292 (369)
++..... ...+++..+- ...+|+++..+
T Consensus 176 v~GG~~~~~~~~~~~yd~--~~~~W~~~~~~ 204 (323)
T TIGR03548 176 VFGGGSNIAYTDGYKYSP--KKNQWQKVADP 204 (323)
T ss_pred EEcCCCCccccceEEEec--CCCeeEECCCC
Confidence 9987642 2345666664 34679987654
No 14
>PLN02193 nitrile-specifier protein
Probab=99.06 E-value=2.6e-08 Score=94.86 Aligned_cols=207 Identities=11% Similarity=0.114 Sum_probs=124.9
Q ss_pred ceEEEEcCCccceeeCCCCCC-CCCCCcccceEEEEEeeeCCCCCeEEEEEEeeeCCCcccCCCCcceEEEEEcCCCceE
Q 036467 109 EDIFLFNPSTKKYKKLPVPEF-DVPTIETTCFTSLGFGYHQADDDYKVIRSIYLYDKPFVDIDSYECEARVYSLASDKWK 187 (369)
Q Consensus 109 ~~~~V~NP~T~~~~~LP~~~~-~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~vys~~t~~W~ 187 (369)
.+++++||.+.+|..+|+... +... ........++ + ++..+.. + +.......+++|++.+++|+
T Consensus 193 ~~v~~yD~~~~~W~~~~~~g~~P~~~----~~~~~~v~~~----~-~lYvfGG-----~-~~~~~~ndv~~yD~~t~~W~ 257 (470)
T PLN02193 193 KHLYVFDLETRTWSISPATGDVPHLS----CLGVRMVSIG----S-TLYVFGG-----R-DASRQYNGFYSFDTTTNEWK 257 (470)
T ss_pred CcEEEEECCCCEEEeCCCCCCCCCCc----ccceEEEEEC----C-EEEEECC-----C-CCCCCCccEEEEECCCCEEE
Confidence 468999999999998875421 1111 0010111111 1 3333332 0 11123457899999999999
Q ss_pred EccCCC---CeeeccCCcEEECceEEEEeecCCCCCceeEEEEEECCCcceeeeCCCCCcCCCCCceeEEEEECCcEEEE
Q 036467 188 KINGGI---PYHISSRAAVCFNECLIWKASRGLGRGMTVLVVAFDMNREEFKEIHRPEYKDSHDKCQIEVGVFRGEFAMF 264 (369)
Q Consensus 188 ~~~~~~---p~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~l~~~~G~L~~~ 264 (369)
.+ ..+ |.....+..+..++.||.+++..... ....+.+||+.+.+|+.++.|.... .......++..+|+++++
T Consensus 258 ~l-~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~-~~~~~~~yd~~t~~W~~~~~~~~~~-~~R~~~~~~~~~gkiyvi 334 (470)
T PLN02193 258 LL-TPVEEGPTPRSFHSMAADEENVYVFGGVSATA-RLKTLDSYNIVDKKWFHCSTPGDSF-SIRGGAGLEVVQGKVWVV 334 (470)
T ss_pred Ec-CcCCCCCCCccceEEEEECCEEEEECCCCCCC-CcceEEEEECCCCEEEeCCCCCCCC-CCCCCcEEEEECCcEEEE
Confidence 98 554 44444455578899999998764321 2246889999999999886543221 111345667789999999
Q ss_pred EecCC-CeEEEEEeccCCCCCCeeEEEEEcccccccccccccceeeeeEEeeeccCCCCCCeEEEEECC-----------
Q 036467 265 HMWRE-DRVEIWTMKDFGARESWTRMFVIGRRALINFDNYAFVHLKPVCEMMNLSNGNGKNFLLIEKGD----------- 332 (369)
Q Consensus 265 ~~~~~-~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----------- 332 (369)
..... ..-++|+++- ...+|+++..+...+.. ........ . + ++|++....
T Consensus 335 GG~~g~~~~dv~~yD~--~t~~W~~~~~~g~~P~~------R~~~~~~~-----~-~---~~iyv~GG~~~~~~~~~~~~ 397 (470)
T PLN02193 335 YGFNGCEVDDVHYYDP--VQDKWTQVETFGVRPSE------RSVFASAA-----V-G---KHIVIFGGEIAMDPLAHVGP 397 (470)
T ss_pred ECCCCCccCceEEEEC--CCCEEEEeccCCCCCCC------cceeEEEE-----E-C---CEEEEECCccCCccccccCc
Confidence 87532 1346788875 34679998765322221 00111111 2 3 567776542
Q ss_pred ----CeEEEEECCCCeEEEeEE
Q 036467 333 ----GELILYDFENEIATDFKI 350 (369)
Q Consensus 333 ----~~~~~ydl~~~~~~~v~~ 350 (369)
..++.||+++++|+.+..
T Consensus 398 ~~~~ndv~~~D~~t~~W~~~~~ 419 (470)
T PLN02193 398 GQLTDGTFALDTETLQWERLDK 419 (470)
T ss_pred cceeccEEEEEcCcCEEEEccc
Confidence 138999999999998864
No 15
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.06 E-value=7.1e-08 Score=89.42 Aligned_cols=186 Identities=11% Similarity=0.044 Sum_probs=107.5
Q ss_pred EeeecccEEEeeccCCceEEEEcCC--ccceeeCCCCCCCCCCCcccceEEEEEeeeCCCCCeEEEEEEeeeCCCcccCC
Q 036467 93 SGSCNGLLCISDQSCNEDIFLFNPS--TKKYKKLPVPEFDVPTIETTCFTSLGFGYHQADDDYKVIRSIYLYDKPFVDID 170 (369)
Q Consensus 93 ~~s~~GLl~~~~~~~~~~~~V~NP~--T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~ 170 (369)
.+..++-|.+..+.....++++++. +++|..+|+++...+. ....+.++ + +|..+............
T Consensus 34 ~~~~~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~----~~~~v~~~-----~--~IYV~GG~~~~~~~~~~ 102 (376)
T PRK14131 34 GAIDNNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPRE----QAVAAFID-----G--KLYVFGGIGKTNSEGSP 102 (376)
T ss_pred EEEECCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcc----cceEEEEC-----C--EEEEEcCCCCCCCCCce
Confidence 4445666654433234567788765 5889999977532221 11111111 1 33333330000000000
Q ss_pred CCcceEEEEEcCCCceEEccCC-CCeeeccCCcEE-ECceEEEEeecCCCC-----------------------------
Q 036467 171 SYECEARVYSLASDKWKKINGG-IPYHISSRAAVC-FNECLIWKASRGLGR----------------------------- 219 (369)
Q Consensus 171 ~~~~~~~vys~~t~~W~~~~~~-~p~~~~~~~~v~-~~G~lyw~~~~~~~~----------------------------- 219 (369)
.....+++|+..+++|+.+ .. .|.....+..+. .+|.||.+++.....
T Consensus 103 ~~~~~v~~YD~~~n~W~~~-~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~ 181 (376)
T PRK14131 103 QVFDDVYKYDPKTNSWQKL-DTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKK 181 (376)
T ss_pred eEcccEEEEeCCCCEEEeC-CCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCC
Confidence 1235789999999999998 43 344333333344 799999998854210
Q ss_pred ----CceeEEEEEECCCcceeee-CCCCCcCCCCCceeEEEEECCcEEEEEecC---CCeEEEEEeccCCCCCCeeEEEE
Q 036467 220 ----GMTVLVVAFDMNREEFKEI-HRPEYKDSHDKCQIEVGVFRGEFAMFHMWR---EDRVEIWTMKDFGARESWTRMFV 291 (369)
Q Consensus 220 ----~~~~~il~fD~~~e~~~~i-~~P~~~~~~~~~~~~l~~~~G~L~~~~~~~---~~~~~iW~l~~~~~~~~W~~~~~ 291 (369)
.....+..||+.+++|+.+ ++|... .....++..+++|+++.... ....++|..+-.....+|+++..
T Consensus 182 ~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~----~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~ 257 (376)
T PRK14131 182 PEDYFFNKEVLSYDPSTNQWKNAGESPFLG----TAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPD 257 (376)
T ss_pred hhhcCcCceEEEEECCCCeeeECCcCCCCC----CCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCC
Confidence 0124799999999999998 566422 13456778899999998742 23456676542223467998887
Q ss_pred Ecc
Q 036467 292 IGR 294 (369)
Q Consensus 292 i~~ 294 (369)
++.
T Consensus 258 ~p~ 260 (376)
T PRK14131 258 LPP 260 (376)
T ss_pred CCC
Confidence 654
No 16
>PHA03098 kelch-like protein; Provisional
Probab=99.03 E-value=2e-08 Score=97.72 Aligned_cols=195 Identities=8% Similarity=-0.018 Sum_probs=123.2
Q ss_pred eEEEEcCCccceeeCCCCCCCCCCCcccceEEEEEeeeCCCCCeEEEEEEeeeCCCcccCCCCcceEEEEEcCCCceEEc
Q 036467 110 DIFLFNPSTKKYKKLPVPEFDVPTIETTCFTSLGFGYHQADDDYKVIRSIYLYDKPFVDIDSYECEARVYSLASDKWKKI 189 (369)
Q Consensus 110 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~vys~~t~~W~~~ 189 (369)
.+.-+|+.+++|..+++.+... ....+..+ -+++.++. ..........+..|+..+++|..+
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~-------~~lyv~GG-----~~~~~~~~~~v~~yd~~~~~W~~~ 326 (534)
T PHA03098 265 NYITNYSPLSEINTIIDIHYVY------CFGSVVLN-------NVIYFIGG-----MNKNNLSVNSVVSYDTKTKSWNKV 326 (534)
T ss_pred eeeecchhhhhcccccCccccc------cceEEEEC-------CEEEEECC-----CcCCCCeeccEEEEeCCCCeeeEC
Confidence 4556788899999887655321 11111111 13444433 111112334689999999999998
Q ss_pred cCCCCeeeccCCcEEECceEEEEeecCCCCCceeEEEEEECCCcceeee-CCCCCcCCCCCceeEEEEECCcEEEEEecC
Q 036467 190 NGGIPYHISSRAAVCFNECLIWKASRGLGRGMTVLVVAFDMNREEFKEI-HRPEYKDSHDKCQIEVGVFRGEFAMFHMWR 268 (369)
Q Consensus 190 ~~~~p~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~e~~~~i-~~P~~~~~~~~~~~~l~~~~G~L~~~~~~~ 268 (369)
+.+|........+.++|.+|.+++.... .....+..||+.+.+|+.+ ++|... .....+..+|+++++++..
T Consensus 327 -~~~~~~R~~~~~~~~~~~lyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~lp~~r-----~~~~~~~~~~~iYv~GG~~ 399 (534)
T PHA03098 327 -PELIYPRKNPGVTVFNNRIYVIGGIYNS-ISLNTVESWKPGESKWREEPPLIFPR-----YNPCVVNVNNLIYVIGGIS 399 (534)
T ss_pred -CCCCcccccceEEEECCEEEEEeCCCCC-EecceEEEEcCCCCceeeCCCcCcCC-----ccceEEEECCEEEEECCcC
Confidence 7777665555668999999999986522 2234788999999999988 566543 3445678899999998853
Q ss_pred C---CeEEEEEeccCCCCCCeeEEEEEcccccccccccccceeeeeEEeeeccCCCCCCeEEEEECC---------CeEE
Q 036467 269 E---DRVEIWTMKDFGARESWTRMFVIGRRALINFDNYAFVHLKPVCEMMNLSNGNGKNFLLIEKGD---------GELI 336 (369)
Q Consensus 269 ~---~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---------~~~~ 336 (369)
. ..-.++..+- .+.+|+.+..++.... .....+ . + ++|++..+. ..+.
T Consensus 400 ~~~~~~~~v~~yd~--~t~~W~~~~~~p~~r~----------~~~~~~----~-~---~~iyv~GG~~~~~~~~~~~~v~ 459 (534)
T PHA03098 400 KNDELLKTVECFSL--NTNKWSKGSPLPISHY----------GGCAIY----H-D---GKIYVIGGISYIDNIKVYNIVE 459 (534)
T ss_pred CCCcccceEEEEeC--CCCeeeecCCCCcccc----------CceEEE----E-C---CEEEEECCccCCCCCcccceEE
Confidence 2 1124566553 3467998765443221 111111 2 3 677776532 1389
Q ss_pred EEECCCCeEEEeE
Q 036467 337 LYDFENEIATDFK 349 (369)
Q Consensus 337 ~ydl~~~~~~~v~ 349 (369)
.||+++++|+.+.
T Consensus 460 ~yd~~~~~W~~~~ 472 (534)
T PHA03098 460 SYNPVTNKWTELS 472 (534)
T ss_pred EecCCCCceeeCC
Confidence 9999999999884
No 17
>PLN02153 epithiospecifier protein
Probab=99.00 E-value=1.8e-07 Score=85.67 Aligned_cols=187 Identities=11% Similarity=0.045 Sum_probs=107.1
Q ss_pred EEeeecccEEEeec----cCCceEEEEcCCccceeeCCCCCCCCCCCcccceEEEEEeeeCCCCCeEEEEEEeeeCCCcc
Q 036467 92 ISGSCNGLLCISDQ----SCNEDIFLFNPSTKKYKKLPVPEFDVPTIETTCFTSLGFGYHQADDDYKVIRSIYLYDKPFV 167 (369)
Q Consensus 92 ~~~s~~GLl~~~~~----~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~ 167 (369)
...+.+|.|.+... ....+++++||.|++|..+|++....... .....+.... .+ |+..+.........
T Consensus 80 ~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~---~R~~~~~~~~--~~--~iyv~GG~~~~~~~ 152 (341)
T PLN02153 80 RMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPE---ARTFHSMASD--EN--HVYVFGGVSKGGLM 152 (341)
T ss_pred EEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCC---CceeeEEEEE--CC--EEEEECCccCCCcc
Confidence 34555666644432 12247899999999999998652110000 1111111111 11 34444331000000
Q ss_pred cCCCCcceEEEEEcCCCceEEccCCCC---eeeccCCcEEECceEEEEeecCC-------CCCceeEEEEEECCCcceee
Q 036467 168 DIDSYECEARVYSLASDKWKKINGGIP---YHISSRAAVCFNECLIWKASRGL-------GRGMTVLVVAFDMNREEFKE 237 (369)
Q Consensus 168 ~~~~~~~~~~vys~~t~~W~~~~~~~p---~~~~~~~~v~~~G~lyw~~~~~~-------~~~~~~~il~fD~~~e~~~~ 237 (369)
........+++|+..+++|..+ +.+. .....+..+.++|.+|.+++... .......+.+||+.+.+|+.
T Consensus 153 ~~~~~~~~v~~yd~~~~~W~~l-~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~ 231 (341)
T PLN02153 153 KTPERFRTIEAYNIADGKWVQL-PDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTE 231 (341)
T ss_pred CCCcccceEEEEECCCCeEeeC-CCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEe
Confidence 0001224689999999999998 5443 22222334789999999876421 01112478999999999998
Q ss_pred eC----CCCCcCCCCCceeEEEEECCcEEEEEecCC-----------CeEEEEEeccCCCCCCeeEEEEEc
Q 036467 238 IH----RPEYKDSHDKCQIEVGVFRGEFAMFHMWRE-----------DRVEIWTMKDFGARESWTRMFVIG 293 (369)
Q Consensus 238 i~----~P~~~~~~~~~~~~l~~~~G~L~~~~~~~~-----------~~~~iW~l~~~~~~~~W~~~~~i~ 293 (369)
++ +|... .....+..+++|+++..... ..-++|.++- ...+|+++....
T Consensus 232 ~~~~g~~P~~r-----~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~--~~~~W~~~~~~~ 295 (341)
T PLN02153 232 VETTGAKPSAR-----SVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDT--ETLVWEKLGECG 295 (341)
T ss_pred ccccCCCCCCc-----ceeeeEEECCEEEEECcccCCccccccccccccccEEEEEc--CccEEEeccCCC
Confidence 84 34433 23456788999999988521 1227899986 456799886543
No 18
>PHA02790 Kelch-like protein; Provisional
Probab=98.99 E-value=3.8e-08 Score=94.05 Aligned_cols=160 Identities=9% Similarity=0.010 Sum_probs=106.3
Q ss_pred EEeeecccEEEeec-cCCceEEEEcCCccceeeCCCCCCCCCCCcccceEEEEEeeeCCCCCeEEEEEEeeeCCCcccCC
Q 036467 92 ISGSCNGLLCISDQ-SCNEDIFLFNPSTKKYKKLPVPEFDVPTIETTCFTSLGFGYHQADDDYKVIRSIYLYDKPFVDID 170 (369)
Q Consensus 92 ~~~s~~GLl~~~~~-~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~ 170 (369)
..++.+|.|.+..+ .....+..++|.+++|..+|+++..+.. ... ..++ =+|..++. . .
T Consensus 313 ~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~-----~~~--~~~~-----g~IYviGG-----~---~ 372 (480)
T PHA02790 313 SGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCN-----PAV--ASIN-----NVIYVIGG-----H---S 372 (480)
T ss_pred eEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcc-----cEE--EEEC-----CEEEEecC-----c---C
Confidence 44567777755443 1235678899999999999998865432 111 1111 14444433 1 1
Q ss_pred CCcceEEEEEcCCCceEEccCCCCeeeccCCcEEECceEEEEeecCCCCCceeEEEEEECCCcceeee-CCCCCcCCCCC
Q 036467 171 SYECEARVYSLASDKWKKINGGIPYHISSRAAVCFNECLIWKASRGLGRGMTVLVVAFDMNREEFKEI-HRPEYKDSHDK 249 (369)
Q Consensus 171 ~~~~~~~vys~~t~~W~~~~~~~p~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~e~~~~i-~~P~~~~~~~~ 249 (369)
.....+++|++++++|..+ +.++........+.++|.||.+++ ....||+.+++|+.+ ++|...
T Consensus 373 ~~~~~ve~ydp~~~~W~~~-~~m~~~r~~~~~~~~~~~IYv~GG---------~~e~ydp~~~~W~~~~~m~~~r----- 437 (480)
T PHA02790 373 ETDTTTEYLLPNHDQWQFG-PSTYYPHYKSCALVFGRRLFLVGR---------NAEFYCESSNTWTLIDDPIYPR----- 437 (480)
T ss_pred CCCccEEEEeCCCCEEEeC-CCCCCccccceEEEECCEEEEECC---------ceEEecCCCCcEeEcCCCCCCc-----
Confidence 1235689999999999999 778877666666899999999984 356799999999998 455433
Q ss_pred ceeEEEEECCcEEEEEecCCCe--EEEEEeccCCCCCCeeE
Q 036467 250 CQIEVGVFRGEFAMFHMWREDR--VEIWTMKDFGARESWTR 288 (369)
Q Consensus 250 ~~~~l~~~~G~L~~~~~~~~~~--~~iW~l~~~~~~~~W~~ 288 (369)
....+++.+|+|+++++..... -.+...+- ...+|+.
T Consensus 438 ~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~--~~~~W~~ 476 (480)
T PHA02790 438 DNPELIIVDNKLLLIGGFYRGSYIDTIEVYNN--RTYSWNI 476 (480)
T ss_pred cccEEEEECCEEEEECCcCCCcccceEEEEEC--CCCeEEe
Confidence 3457789999999999864211 12333332 3456864
No 19
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.81 E-value=8.7e-10 Score=69.15 Aligned_cols=40 Identities=23% Similarity=0.515 Sum_probs=34.9
Q ss_pred CCcHHHHHHHhccCCccccceeeecccchhcccCChhhHH
Q 036467 1 NLPTDIITDIFTRLPVKSLIRFKCVSKSMYALVHNKIFIK 40 (369)
Q Consensus 1 ~LP~Dll~eIL~rLp~~~l~r~r~VcK~W~~li~~~~F~~ 40 (369)
+||+|++.+||..|+++++.+++.|||+|+.++.++.+-+
T Consensus 3 ~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~ 42 (47)
T PF12937_consen 3 SLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWR 42 (47)
T ss_dssp CS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHH
T ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhh
Confidence 5999999999999999999999999999999998875544
No 20
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.77 E-value=1.4e-09 Score=68.71 Aligned_cols=43 Identities=35% Similarity=0.536 Sum_probs=36.7
Q ss_pred CCcHHHHHHHhccCCccccceeeecccchhcccCChhhHHHHH
Q 036467 1 NLPTDIITDIFTRLPVKSLIRFKCVSKSMYALVHNKIFIKKHV 43 (369)
Q Consensus 1 ~LP~Dll~eIL~rLp~~~l~r~r~VcK~W~~li~~~~F~~~~~ 43 (369)
+||+|++.+||.+|+++++++++.|||+|++++.++.+...+.
T Consensus 5 ~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~~ 47 (48)
T PF00646_consen 5 DLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKII 47 (48)
T ss_dssp HS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHHH
T ss_pred HCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHHh
Confidence 4899999999999999999999999999999999998876543
No 21
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.72 E-value=9.5e-06 Score=75.31 Aligned_cols=155 Identities=15% Similarity=0.187 Sum_probs=91.9
Q ss_pred ceEEEEEcCCCceEEccCCCCee-eccCCcEEECceEEEEeecCCC--CCceeEEEEEECCCcceeee-CCCCCcCCC--
Q 036467 174 CEARVYSLASDKWKKINGGIPYH-ISSRAAVCFNECLIWKASRGLG--RGMTVLVVAFDMNREEFKEI-HRPEYKDSH-- 247 (369)
Q Consensus 174 ~~~~vys~~t~~W~~~~~~~p~~-~~~~~~v~~~G~lyw~~~~~~~--~~~~~~il~fD~~~e~~~~i-~~P~~~~~~-- 247 (369)
..+++|+..++.|..+ ..+|.. ......+.+++.||.+++.... .........||+++.+|+.+ ++|......
T Consensus 189 ~~v~~YD~~t~~W~~~-~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~ 267 (376)
T PRK14131 189 KEVLSYDPSTNQWKNA-GESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQ 267 (376)
T ss_pred ceEEEEECCCCeeeEC-CcCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcCCcC
Confidence 5789999999999999 777753 3334447889999999975321 11112345678889999988 566543111
Q ss_pred CC-ceeEEEEECCcEEEEEecCCC---------e-------EEEEEeccCC-CCCCeeEEEEEcccccccccccccceee
Q 036467 248 DK-CQIEVGVFRGEFAMFHMWRED---------R-------VEIWTMKDFG-ARESWTRMFVIGRRALINFDNYAFVHLK 309 (369)
Q Consensus 248 ~~-~~~~l~~~~G~L~~~~~~~~~---------~-------~~iW~l~~~~-~~~~W~~~~~i~~~~~~~~~~~~~~~~~ 309 (369)
.. .....++.+|+|+++...... . -.+|..+-|. ....|+++..++.... ...
T Consensus 268 ~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r~---------~~~ 338 (376)
T PRK14131 268 EGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGLA---------YGV 338 (376)
T ss_pred CccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCcc---------ceE
Confidence 01 122356789999999875310 0 0123322221 2357988765543221 111
Q ss_pred eeEEeeeccCCCCCCeEEEEECC-------CeEEEEECCCCeEEE
Q 036467 310 PVCEMMNLSNGNGKNFLLIEKGD-------GELILYDFENEIATD 347 (369)
Q Consensus 310 ~~~~~~~~~~~~~~~~i~~~~~~-------~~~~~ydl~~~~~~~ 347 (369)
.+. . + ++||+..+. ..+..|+++++++..
T Consensus 339 av~-----~-~---~~iyv~GG~~~~~~~~~~v~~~~~~~~~~~~ 374 (376)
T PRK14131 339 SVS-----W-N---NGVLLIGGETAGGKAVSDVTLLSWDGKKLTV 374 (376)
T ss_pred EEE-----e-C---CEEEEEcCCCCCCcEeeeEEEEEEcCCEEEE
Confidence 112 2 3 678887642 137888888776643
No 22
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=98.68 E-value=7.9e-06 Score=75.03 Aligned_cols=116 Identities=15% Similarity=0.199 Sum_probs=73.8
Q ss_pred ceEEEEEcCCCceEEccCCCCee-eccCCcEEECceEEEEeecCCCCCceeEEEEEE--CCCcceeee-CCCCCcCC-CC
Q 036467 174 CEARVYSLASDKWKKINGGIPYH-ISSRAAVCFNECLIWKASRGLGRGMTVLVVAFD--MNREEFKEI-HRPEYKDS-HD 248 (369)
Q Consensus 174 ~~~~vys~~t~~W~~~~~~~p~~-~~~~~~v~~~G~lyw~~~~~~~~~~~~~il~fD--~~~e~~~~i-~~P~~~~~-~~ 248 (369)
..+++|++.+++|..+ ..+|.. ......+.++|.||.+++..........+..|| +.+.+|+.+ ++|..... ..
T Consensus 168 ~~v~~YDp~t~~W~~~-~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~ 246 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNL-GENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQE 246 (346)
T ss_pred ceEEEEECCCCceeEC-ccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCccc
Confidence 5799999999999999 777753 333344788999999997643211122344454 567799888 56543210 01
Q ss_pred -CceeEEEEECCcEEEEEecCC---------------------CeEEEEEeccCCCCCCeeEEEEEcc
Q 036467 249 -KCQIEVGVFRGEFAMFHMWRE---------------------DRVEIWTMKDFGARESWTRMFVIGR 294 (369)
Q Consensus 249 -~~~~~l~~~~G~L~~~~~~~~---------------------~~~~iW~l~~~~~~~~W~~~~~i~~ 294 (369)
......++.+|+|+++..... ..+++|..+ ..+|+.+..++.
T Consensus 247 ~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~----~~~W~~~~~lp~ 310 (346)
T TIGR03547 247 GLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALD----NGKWSKVGKLPQ 310 (346)
T ss_pred cccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEec----CCcccccCCCCC
Confidence 123346778999999987531 134555554 256998876654
No 23
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.68 E-value=2.4e-09 Score=65.12 Aligned_cols=39 Identities=33% Similarity=0.635 Sum_probs=36.7
Q ss_pred CcHHHHHHHhccCCccccceeeecccchhcccCChhhHH
Q 036467 2 LPTDIITDIFTRLPVKSLIRFKCVSKSMYALVHNKIFIK 40 (369)
Q Consensus 2 LP~Dll~eIL~rLp~~~l~r~r~VcK~W~~li~~~~F~~ 40 (369)
||+|++.+||.+|+++++.++++|||+|+.++.++.|..
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~ 39 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF 39 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 799999999999999999999999999999999987753
No 24
>PLN02193 nitrile-specifier protein
Probab=98.59 E-value=1.1e-05 Score=77.13 Aligned_cols=176 Identities=10% Similarity=0.052 Sum_probs=107.5
Q ss_pred EeeecccEEEeec----cCCceEEEEcCCccceeeCCCCCCCCCCCcccceEEEEEeeeCCCCCeEEEEEEeeeCCCccc
Q 036467 93 SGSCNGLLCISDQ----SCNEDIFLFNPSTKKYKKLPVPEFDVPTIETTCFTSLGFGYHQADDDYKVIRSIYLYDKPFVD 168 (369)
Q Consensus 93 ~~s~~GLl~~~~~----~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~ 168 (369)
....++.|.+... ...++++++||.|++|..++++...+.. .....+... + =|++.+.. . .
T Consensus 224 ~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~-----R~~h~~~~~---~-~~iYv~GG-----~-~ 288 (470)
T PLN02193 224 MVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTP-----RSFHSMAAD---E-ENVYVFGG-----V-S 288 (470)
T ss_pred EEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCC-----ccceEEEEE---C-CEEEEECC-----C-C
Confidence 4455666644432 1235799999999999999876321111 011111111 1 23444433 1 1
Q ss_pred CCCCcceEEEEEcCCCceEEccCC---CCeeeccCCcEEECceEEEEeecCCCCCceeEEEEEECCCcceeeeCC----C
Q 036467 169 IDSYECEARVYSLASDKWKKINGG---IPYHISSRAAVCFNECLIWKASRGLGRGMTVLVVAFDMNREEFKEIHR----P 241 (369)
Q Consensus 169 ~~~~~~~~~vys~~t~~W~~~~~~---~p~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~e~~~~i~~----P 241 (369)
.......+++|+..+++|..+ .. +|.....+..+.++|.+|.+.+.... ....+.+||+.+++|+.++. |
T Consensus 289 ~~~~~~~~~~yd~~t~~W~~~-~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~--~~~dv~~yD~~t~~W~~~~~~g~~P 365 (470)
T PLN02193 289 ATARLKTLDSYNIVDKKWFHC-STPGDSFSIRGGAGLEVVQGKVWVVYGFNGC--EVDDVHYYDPVQDKWTQVETFGVRP 365 (470)
T ss_pred CCCCcceEEEEECCCCEEEeC-CCCCCCCCCCCCcEEEEECCcEEEEECCCCC--ccCceEEEECCCCEEEEeccCCCCC
Confidence 122345689999999999988 32 22222233347889999999875421 13479999999999998842 3
Q ss_pred CCcCCCCCceeEEEEECCcEEEEEecCC---------Ce--EEEEEeccCCCCCCeeEEEEEc
Q 036467 242 EYKDSHDKCQIEVGVFRGEFAMFHMWRE---------DR--VEIWTMKDFGARESWTRMFVIG 293 (369)
Q Consensus 242 ~~~~~~~~~~~~l~~~~G~L~~~~~~~~---------~~--~~iW~l~~~~~~~~W~~~~~i~ 293 (369)
... .....+..+++|+++..... .. -++|.++- .+.+|+++..+.
T Consensus 366 ~~R-----~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~--~t~~W~~~~~~~ 421 (470)
T PLN02193 366 SER-----SVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDT--ETLQWERLDKFG 421 (470)
T ss_pred CCc-----ceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEc--CcCEEEEcccCC
Confidence 322 23456788999999987521 11 26899986 456799876654
No 25
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.55 E-value=4.3e-06 Score=76.00 Aligned_cols=139 Identities=15% Similarity=0.158 Sum_probs=92.3
Q ss_pred ceEEccCCCCeeeccCCcEEECceEEEEeecCCCCCceeEEEEEECCCcce----eee-CCCCCcCCCCCceeEEEEECC
Q 036467 185 KWKKINGGIPYHISSRAAVCFNECLIWKASRGLGRGMTVLVVAFDMNREEF----KEI-HRPEYKDSHDKCQIEVGVFRG 259 (369)
Q Consensus 185 ~W~~~~~~~p~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~e~~----~~i-~~P~~~~~~~~~~~~l~~~~G 259 (369)
.|..+ ..+|........+.+++.||.+++..... ....+..||+.+.+| ..+ ++|... .....++.+|
T Consensus 52 ~W~~~-~~lp~~r~~~~~~~~~~~lyviGG~~~~~-~~~~v~~~d~~~~~w~~~~~~~~~lp~~~-----~~~~~~~~~~ 124 (323)
T TIGR03548 52 KWVKD-GQLPYEAAYGASVSVENGIYYIGGSNSSE-RFSSVYRITLDESKEELICETIGNLPFTF-----ENGSACYKDG 124 (323)
T ss_pred eEEEc-ccCCccccceEEEEECCEEEEEcCCCCCC-CceeEEEEEEcCCceeeeeeEcCCCCcCc-----cCceEEEECC
Confidence 79998 77887665555688899999998764321 234788999999988 444 455443 2456678899
Q ss_pred cEEEEEecCC--CeEEEEEeccCCCCCCeeEEEEEcccccccccccccceeeeeEEeeeccCCCCCCeEEEEECC-----
Q 036467 260 EFAMFHMWRE--DRVEIWTMKDFGARESWTRMFVIGRRALINFDNYAFVHLKPVCEMMNLSNGNGKNFLLIEKGD----- 332 (369)
Q Consensus 260 ~L~~~~~~~~--~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----- 332 (369)
+|+++..... ..-++|.++- ...+|+++..++.... .....+ .-+ ++|++..+.
T Consensus 125 ~iYv~GG~~~~~~~~~v~~yd~--~~~~W~~~~~~p~~~r----------~~~~~~----~~~---~~iYv~GG~~~~~~ 185 (323)
T TIGR03548 125 TLYVGGGNRNGKPSNKSYLFNL--ETQEWFELPDFPGEPR----------VQPVCV----KLQ---NELYVFGGGSNIAY 185 (323)
T ss_pred EEEEEeCcCCCccCceEEEEcC--CCCCeeECCCCCCCCC----------CcceEE----EEC---CEEEEEcCCCCccc
Confidence 9999987521 2336777774 3467998765543211 111222 113 678887542
Q ss_pred CeEEEEECCCCeEEEeE
Q 036467 333 GELILYDFENEIATDFK 349 (369)
Q Consensus 333 ~~~~~ydl~~~~~~~v~ 349 (369)
..+..||+++++|+.+.
T Consensus 186 ~~~~~yd~~~~~W~~~~ 202 (323)
T TIGR03548 186 TDGYKYSPKKNQWQKVA 202 (323)
T ss_pred cceEEEecCCCeeEECC
Confidence 13789999999999885
No 26
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=98.38 E-value=1.4e-05 Score=67.19 Aligned_cols=225 Identities=14% Similarity=0.124 Sum_probs=129.1
Q ss_pred eecccEEEeeccCCceEEEEcCCccceeeCCCC--CCCCCCCc-ccceEEEE---EeeeCCCCCeEEEEEEeeeCCCccc
Q 036467 95 SCNGLLCISDQSCNEDIFLFNPSTKKYKKLPVP--EFDVPTIE-TTCFTSLG---FGYHQADDDYKVIRSIYLYDKPFVD 168 (369)
Q Consensus 95 s~~GLl~~~~~~~~~~~~V~NP~T~~~~~LP~~--~~~~~~~~-~~~~~~~~---~g~d~~~~~ykvv~~~~~~~~~~~~ 168 (369)
-|.|-.--.. .+-++.+.|-.+-+|.++||- ........ ...+..+| ..|+ =|+..... ..+
T Consensus 32 YCsGedy~~~--~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~-----d~~yvWGG-----RND 99 (392)
T KOG4693|consen 32 YCSGEDYDAK--DPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQ-----DKAYVWGG-----RND 99 (392)
T ss_pred cccccccccC--CcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEc-----ceEEEEcC-----ccC
Confidence 3455443333 567899999999999999983 22111100 00011111 1111 12322222 122
Q ss_pred CCCCcceEEEEEcCCCceEEc--cCCCCeeeccCCcEEECceEEEEeecCCC-CCceeEEEEEECCCcceeeeC---CCC
Q 036467 169 IDSYECEARVYSLASDKWKKI--NGGIPYHISSRAAVCFNECLIWKASRGLG-RGMTVLVVAFDMNREEFKEIH---RPE 242 (369)
Q Consensus 169 ~~~~~~~~~vys~~t~~W~~~--~~~~p~~~~~~~~v~~~G~lyw~~~~~~~-~~~~~~il~fD~~~e~~~~i~---~P~ 242 (369)
..+.......|+.+++.|++. ..-.|-....+..+.++..+|..++..++ .....-+.++|+++++|+.+. .|+
T Consensus 100 ~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~Pp 179 (392)
T KOG4693|consen 100 DEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPP 179 (392)
T ss_pred cccccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCc
Confidence 345567788999999999866 22345455566678889999999876432 112247889999999999983 344
Q ss_pred CcCCCCCceeEEEEECCcEEEEEecCC-----------CeEEEEEeccCCCCCCeeEEEEEcccccccccccccceeeee
Q 036467 243 YKDSHDKCQIEVGVFRGEFAMFHMWRE-----------DRVEIWTMKDFGARESWTRMFVIGRRALINFDNYAFVHLKPV 311 (369)
Q Consensus 243 ~~~~~~~~~~~l~~~~G~L~~~~~~~~-----------~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~ 311 (369)
.-+ ..-.-.+++|+.+++....+ -.-+|-.|+- ..+.|..-..-+..+. .....+
T Consensus 180 rwR----DFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~--~T~aW~r~p~~~~~P~------GRRSHS-- 245 (392)
T KOG4693|consen 180 RWR----DFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDL--ATGAWTRTPENTMKPG------GRRSHS-- 245 (392)
T ss_pred hhh----hhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEec--cccccccCCCCCcCCC------cccccc--
Confidence 331 12234566788888876421 1223444543 2366887632222221 111112
Q ss_pred EEeeeccCCCCCCeEEEEECC--------CeEEEEECCCCeEEEeEEec
Q 036467 312 CEMMNLSNGNGKNFLLIEKGD--------GELILYDFENEIATDFKIQR 352 (369)
Q Consensus 312 ~~~~~~~~~~~~~~i~~~~~~--------~~~~~ydl~~~~~~~v~~~~ 352 (369)
.+ ..+ |++++..+- ..++.||++|..|+.|...|
T Consensus 246 ~f----vYn---g~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~G 287 (392)
T KOG4693|consen 246 TF----VYN---GKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRG 287 (392)
T ss_pred eE----EEc---ceEEEecccchhhhhhhcceeecccccchheeeeccC
Confidence 22 224 788876531 23999999999999998765
No 27
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=98.14 E-value=0.0001 Score=65.90 Aligned_cols=219 Identities=14% Similarity=0.218 Sum_probs=126.8
Q ss_pred ceEEEEcCCccceeeC--CCCCCCCCCCcccceEEEEEeeeCCCCCeEEEEEEe-eeCCCcccCCCCcceEEEEEcCCCc
Q 036467 109 EDIFLFNPSTKKYKKL--PVPEFDVPTIETTCFTSLGFGYHQADDDYKVIRSIY-LYDKPFVDIDSYECEARVYSLASDK 185 (369)
Q Consensus 109 ~~~~V~NP~T~~~~~L--P~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~-~~~~~~~~~~~~~~~~~vys~~t~~ 185 (369)
+++|++|--+.+|+.+ |..|.++.. ......+++ ++.++. .-.+|.-+.-.+-..+++|++.+++
T Consensus 98 ndLy~Yn~k~~eWkk~~spn~P~pRss--------hq~va~~s~----~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trk 165 (521)
T KOG1230|consen 98 NDLYSYNTKKNEWKKVVSPNAPPPRSS--------HQAVAVPSN----ILWLFGGEFASPNQEQFHHYKDLWLFDLKTRK 165 (521)
T ss_pred eeeeEEeccccceeEeccCCCcCCCcc--------ceeEEeccC----eEEEeccccCCcchhhhhhhhheeeeeeccch
Confidence 5789999999999987 333322211 112222222 223222 0001111011234568899999999
Q ss_pred eEEcc-CCCCeeeccCCcEEECceEEEEeecCCCC---CceeEEEEEECCCcceeeeCCCCCcCCCCCceeEEEEE-CCc
Q 036467 186 WKKIN-GGIPYHISSRAAVCFNECLIWKASRGLGR---GMTVLVVAFDMNREEFKEIHRPEYKDSHDKCQIEVGVF-RGE 260 (369)
Q Consensus 186 W~~~~-~~~p~~~~~~~~v~~~G~lyw~~~~~~~~---~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~l~~~-~G~ 260 (369)
|..+. ...|-....++.|.....|.-+++..+.. .+..-+.+||+++=+|+.+..+-... ....+..+.+. +|.
T Consensus 166 weql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~P-tpRSGcq~~vtpqg~ 244 (521)
T KOG1230|consen 166 WEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGP-TPRSGCQFSVTPQGG 244 (521)
T ss_pred heeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCC-CCCCcceEEecCCCc
Confidence 99882 23455556666777766666666544321 23357899999999999996544321 11245566677 788
Q ss_pred EEEEEecC-----------CCeEEEEEeccCC---CCCCeeEEEEEcccccccccccccceeeeeEEeeeccCCCCCCeE
Q 036467 261 FAMFHMWR-----------EDRVEIWTMKDFG---ARESWTRMFVIGRRALINFDNYAFVHLKPVCEMMNLSNGNGKNFL 326 (369)
Q Consensus 261 L~~~~~~~-----------~~~~~iW~l~~~~---~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 326 (369)
++|..++. ...-++|.|+... .+-.|.++-.+..++-+. ....+++ +.+ +.-+
T Consensus 245 i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspR-------sgfsv~v----a~n--~kal 311 (521)
T KOG1230|consen 245 IVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPR-------SGFSVAV----AKN--HKAL 311 (521)
T ss_pred EEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCC-------CceeEEE----ecC--CceE
Confidence 88887652 1355899998532 223577887777665430 1122333 444 1333
Q ss_pred EEE--EC----C--------CeEEEEECCCCeEEEeEEecC
Q 036467 327 LIE--KG----D--------GELILYDFENEIATDFKIQRA 353 (369)
Q Consensus 327 ~~~--~~----~--------~~~~~ydl~~~~~~~v~~~~~ 353 (369)
+|- .+ + ..++.||+..++|..-++++-
T Consensus 312 ~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~qlq~~ 352 (521)
T KOG1230|consen 312 FFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEGQLQGK 352 (521)
T ss_pred EecceecccccchhhhhhhhhhhhheecccchhhHhhhccC
Confidence 331 11 0 238999999999988877653
No 28
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=97.86 E-value=0.00041 Score=58.63 Aligned_cols=115 Identities=15% Similarity=0.302 Sum_probs=80.4
Q ss_pred CcceEEEEEcCCCceEEcc--CCCCeeeccCCcEEECceEEEEeecCCCC--------CceeEEEEEECCCcceeeeC--
Q 036467 172 YECEARVYSLASDKWKKIN--GGIPYHISSRAAVCFNECLIWKASRGLGR--------GMTVLVVAFDMNREEFKEIH-- 239 (369)
Q Consensus 172 ~~~~~~vys~~t~~W~~~~--~~~p~~~~~~~~v~~~G~lyw~~~~~~~~--------~~~~~il~fD~~~e~~~~i~-- 239 (369)
....+.+++..|-.||.+. .++|.-..++.++.++|.+|..++..... ..-..|++||+.++.|..-+
T Consensus 155 FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~ 234 (392)
T KOG4693|consen 155 FSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPEN 234 (392)
T ss_pred hhccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCC
Confidence 3566788899999999882 23333345667788899999999765421 12358999999999998762
Q ss_pred --CCCCcCCCCCceeEEEEECCcEEEEEecCC----CeEEEEEeccCCCCCCeeEEEEEc
Q 036467 240 --RPEYKDSHDKCQIEVGVFRGEFAMFHMWRE----DRVEIWTMKDFGARESWTRMFVIG 293 (369)
Q Consensus 240 --~P~~~~~~~~~~~~l~~~~G~L~~~~~~~~----~~~~iW~l~~~~~~~~W~~~~~i~ 293 (369)
.|... ..-...+++|+++++..... .--++|.++- ....|+++..-.
T Consensus 235 ~~~P~GR-----RSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP--~t~~W~~I~~~G 287 (392)
T KOG4693|consen 235 TMKPGGR-----RSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDP--KTSMWSVISVRG 287 (392)
T ss_pred CcCCCcc-----cccceEEEcceEEEecccchhhhhhhcceeeccc--ccchheeeeccC
Confidence 23322 23456789999999988642 3447888885 446698876544
No 29
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=97.62 E-value=0.0017 Score=62.24 Aligned_cols=156 Identities=12% Similarity=0.114 Sum_probs=104.4
Q ss_pred eEEEEEcCCCceEEcc--CCCCeeeccCCcEEECceEEEEeecCCCCCceeEEEEEECCCcceeeeCC----CCCcCCCC
Q 036467 175 EARVYSLASDKWKKIN--GGIPYHISSRAAVCFNECLIWKASRGLGRGMTVLVVAFDMNREEFKEIHR----PEYKDSHD 248 (369)
Q Consensus 175 ~~~vys~~t~~W~~~~--~~~p~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~e~~~~i~~----P~~~~~~~ 248 (369)
.+.+++..+..|.... ...|.....+..+.++..||.+++..........+.+||+.+.+|..+.. |+..
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r---- 164 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPR---- 164 (482)
T ss_pred eeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCc----
Confidence 4888888888897551 23444444555689999999999876422234589999999999998832 3332
Q ss_pred CceeEEEEECCcEEEEEecCC---CeEEEEEeccCCCCCCeeEEEEEcccccccccccccceeeeeEEeeeccCCCCCCe
Q 036467 249 KCQIEVGVFRGEFAMFHMWRE---DRVEIWTMKDFGARESWTRMFVIGRRALINFDNYAFVHLKPVCEMMNLSNGNGKNF 325 (369)
Q Consensus 249 ~~~~~l~~~~G~L~~~~~~~~---~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (369)
....++..+.+|+++.+... ..-++|+++- ...+|.++.+.+..+.+. ....+.+ .+ ++
T Consensus 165 -~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~--~~~~W~~~~~~g~~P~pR-------~gH~~~~----~~----~~ 226 (482)
T KOG0379|consen 165 -AGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDL--ETSTWSELDTQGEAPSPR-------YGHAMVV----VG----NK 226 (482)
T ss_pred -ccceEEEECCEEEEECCccCcccceeeeeeecc--ccccceecccCCCCCCCC-------CCceEEE----EC----Ce
Confidence 34567777889999987642 4678999986 345699999887665531 1122222 22 45
Q ss_pred EEEEECCC-------eEEEEECCCCeEEEeEEec
Q 036467 326 LLIEKGDG-------ELILYDFENEIATDFKIQR 352 (369)
Q Consensus 326 i~~~~~~~-------~~~~ydl~~~~~~~v~~~~ 352 (369)
++++.+.. .+..+|+.+.+|+.+...+
T Consensus 227 ~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g 260 (482)
T KOG0379|consen 227 LLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGG 260 (482)
T ss_pred EEEEeccccCCceecceEeeecccceeeeccccC
Confidence 55544321 2899999999898665433
No 30
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=97.41 E-value=0.015 Score=55.75 Aligned_cols=168 Identities=13% Similarity=0.131 Sum_probs=101.4
Q ss_pred ceEEEEcCCccceeeCCCCCCCCCCCcccceEEEEEeeeCCCCCeEEEEEEeeeCCCcccCCCCcceEEEEEcCCCceEE
Q 036467 109 EDIFLFNPSTKKYKKLPVPEFDVPTIETTCFTSLGFGYHQADDDYKVIRSIYLYDKPFVDIDSYECEARVYSLASDKWKK 188 (369)
Q Consensus 109 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~vys~~t~~W~~ 188 (369)
.++..+|+.|++|..+.+....+.. .....+... ++ |++.+... .........++||+..+.+|..
T Consensus 139 ~~l~~~d~~t~~W~~l~~~~~~P~~-----r~~Hs~~~~---g~-~l~vfGG~-----~~~~~~~ndl~i~d~~~~~W~~ 204 (482)
T KOG0379|consen 139 NELHSLDLSTRTWSLLSPTGDPPPP-----RAGHSATVV---GT-KLVVFGGI-----GGTGDSLNDLHIYDLETSTWSE 204 (482)
T ss_pred hheEeccCCCCcEEEecCcCCCCCC-----cccceEEEE---CC-EEEEECCc-----cCcccceeeeeeecccccccee
Confidence 4899999999999998654431111 111111111 12 33333321 0011256789999999999998
Q ss_pred ccC--CCCeeeccCCcEEECceEEEEeecCCCCCceeEEEEEECCCcceeeeCCCCCcCCCCCceeEEEEECCcEEEEEe
Q 036467 189 ING--GIPYHISSRAAVCFNECLIWKASRGLGRGMTVLVVAFDMNREEFKEIHRPEYKDSHDKCQIEVGVFRGEFAMFHM 266 (369)
Q Consensus 189 ~~~--~~p~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~l~~~~G~L~~~~~ 266 (369)
+.. ..|.....+..+.+++.++.+.+...+.....-+..||+.+.+|..++ +............++..+..+.++..
T Consensus 205 ~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~-~~g~~p~~R~~h~~~~~~~~~~l~gG 283 (482)
T KOG0379|consen 205 LDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLP-TGGDLPSPRSGHSLTVSGDHLLLFGG 283 (482)
T ss_pred cccCCCCCCCCCCceEEEECCeEEEEeccccCCceecceEeeecccceeeecc-ccCCCCCCcceeeeEEECCEEEEEcC
Confidence 822 223333344557788888877776644445568999999999998442 11110011244566666677888877
Q ss_pred cCC----CeEEEEEeccCCCCCCeeEEEEEc
Q 036467 267 WRE----DRVEIWTMKDFGARESWTRMFVIG 293 (369)
Q Consensus 267 ~~~----~~~~iW~l~~~~~~~~W~~~~~i~ 293 (369)
... .--++|.|+. ....|+++....
T Consensus 284 ~~~~~~~~l~~~~~l~~--~~~~w~~~~~~~ 312 (482)
T KOG0379|consen 284 GTDPKQEPLGDLYGLDL--ETLVWSKVESVG 312 (482)
T ss_pred Ccccccccccccccccc--cccceeeeeccc
Confidence 643 2456788876 356799987776
No 31
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=97.37 E-value=0.0064 Score=53.43 Aligned_cols=41 Identities=27% Similarity=0.348 Sum_probs=37.2
Q ss_pred Cc----HHHHHHHhccCCccccceeeecccchhcccCChhhHHHH
Q 036467 2 LP----TDIITDIFTRLPVKSLIRFKCVSKSMYALVHNKIFIKKH 42 (369)
Q Consensus 2 LP----~Dll~eIL~rLp~~~l~r~r~VcK~W~~li~~~~F~~~~ 42 (369)
|| +++.+.||+.|...+|+.|..|||+|+++++++..-++.
T Consensus 78 lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKkL 122 (499)
T KOG0281|consen 78 LPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKKL 122 (499)
T ss_pred cccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHHH
Confidence 78 999999999999999999999999999999998755543
No 32
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=5.8e-05 Score=65.07 Aligned_cols=38 Identities=32% Similarity=0.564 Sum_probs=35.1
Q ss_pred CCcHHHHHHHhccCCccccceeeecccchhcccCChhh
Q 036467 1 NLPTDIITDIFTRLPVKSLIRFKCVSKSMYALVHNKIF 38 (369)
Q Consensus 1 ~LP~Dll~eIL~rLp~~~l~r~r~VcK~W~~li~~~~F 38 (369)
+||||+++.||+.|+.|+|+++..|||+|+++.++...
T Consensus 100 slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~l 137 (419)
T KOG2120|consen 100 SLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESL 137 (419)
T ss_pred cCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccc
Confidence 58999999999999999999999999999999887653
No 33
>PF13964 Kelch_6: Kelch motif
Probab=96.84 E-value=0.0032 Score=39.64 Aligned_cols=42 Identities=12% Similarity=0.114 Sum_probs=33.6
Q ss_pred CCcEEECceEEEEeecCCCCCceeEEEEEECCCcceeee-CCC
Q 036467 200 RAAVCFNECLIWKASRGLGRGMTVLVVAFDMNREEFKEI-HRP 241 (369)
Q Consensus 200 ~~~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~e~~~~i-~~P 241 (369)
+..+.++|.||.+++..........+..||+.+++|+.+ ++|
T Consensus 5 ~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp 47 (50)
T PF13964_consen 5 HSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMP 47 (50)
T ss_pred CEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCC
Confidence 345899999999998865333446899999999999999 555
No 34
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=96.60 E-value=0.13 Score=44.53 Aligned_cols=133 Identities=13% Similarity=0.188 Sum_probs=86.0
Q ss_pred CCCeeeccCCcEEECceEEEEeecCCCCCceeEEEEEECCCccee-eeCCCCCcCC-------CCCceeEEEEECCcEEE
Q 036467 192 GIPYHISSRAAVCFNECLIWKASRGLGRGMTVLVVAFDMNREEFK-EIHRPEYKDS-------HDKCQIEVGVFRGEFAM 263 (369)
Q Consensus 192 ~~p~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~e~~~-~i~~P~~~~~-------~~~~~~~l~~~~G~L~~ 263 (369)
.+|....+..-|..||.+|+-.... ..|+.||+.+++-. ...+|..... .....+.+++.+..|.+
T Consensus 64 ~Lp~~~~GtG~vVYngslYY~~~~s------~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWv 137 (250)
T PF02191_consen 64 KLPYPWQGTGHVVYNGSLYYNKYNS------RNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWV 137 (250)
T ss_pred EEeceeccCCeEEECCcEEEEecCC------ceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEE
Confidence 3454444445599999999998855 39999999999998 6788876532 11245788888888888
Q ss_pred EEecCC--CeEEEEEeccCC--CCCCeeEEEEEcccccccccccccceeeeeEEeeeccCCCCCCeEEEEECC----Ce-
Q 036467 264 FHMWRE--DRVEIWTMKDFG--ARESWTRMFVIGRRALINFDNYAFVHLKPVCEMMNLSNGNGKNFLLIEKGD----GE- 334 (369)
Q Consensus 264 ~~~~~~--~~~~iW~l~~~~--~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~- 334 (369)
+..... ..+-|-.|+... ..++|.-- ++-.. ....+.+ + |.++..... .+
T Consensus 138 IYat~~~~g~ivvskld~~tL~v~~tw~T~--~~k~~----------~~naFmv------C---GvLY~~~s~~~~~~~I 196 (250)
T PF02191_consen 138 IYATEDNNGNIVVSKLDPETLSVEQTWNTS--YPKRS----------AGNAFMV------C---GVLYATDSYDTRDTEI 196 (250)
T ss_pred EEecCCCCCcEEEEeeCcccCceEEEEEec--cCchh----------hcceeeE------e---eEEEEEEECCCCCcEE
Confidence 876543 357777777532 22344421 11111 1222333 4 677776532 22
Q ss_pred EEEEECCCCeEEEeEEe
Q 036467 335 LILYDFENEIATDFKIQ 351 (369)
Q Consensus 335 ~~~ydl~~~~~~~v~~~ 351 (369)
.++||+.+++-+.+.+.
T Consensus 197 ~yafDt~t~~~~~~~i~ 213 (250)
T PF02191_consen 197 FYAFDTYTGKEEDVSIP 213 (250)
T ss_pred EEEEECCCCceeceeee
Confidence 69999999998887764
No 35
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=96.55 E-value=0.0068 Score=37.43 Aligned_cols=41 Identities=20% Similarity=0.173 Sum_probs=34.4
Q ss_pred CcEEECceEEEEeecCCCCCceeEEEEEECCCcceeee-CCC
Q 036467 201 AAVCFNECLIWKASRGLGRGMTVLVVAFDMNREEFKEI-HRP 241 (369)
Q Consensus 201 ~~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~e~~~~i-~~P 241 (369)
..+.++|.||.+++..........+..||+.+.+|..+ ++|
T Consensus 6 ~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 6 AAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp EEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred EEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 34899999999998876555678999999999999988 444
No 36
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.17 E-value=0.074 Score=47.34 Aligned_cols=119 Identities=12% Similarity=0.210 Sum_probs=80.6
Q ss_pred ceEEEEEcCCCceEEccCCCCeeeccCCcEEECc-eEEEEeecCCC---------------------------------C
Q 036467 174 CEARVYSLASDKWKKINGGIPYHISSRAAVCFNE-CLIWKASRGLG---------------------------------R 219 (369)
Q Consensus 174 ~~~~vys~~t~~W~~~~~~~p~~~~~~~~v~~~G-~lyw~~~~~~~---------------------------------~ 219 (369)
..+..|++.+++|..++...|.......++..++ .+|+.++-... .
T Consensus 113 nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy 192 (381)
T COG3055 113 NDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDY 192 (381)
T ss_pred eeeEEecCCCChhheeccccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHh
Confidence 4578899999999999666777765666666666 88888764321 0
Q ss_pred CceeEEEEEECCCcceeee-CCCCCcCCCCCceeEEEEECCcEEEEEecC-C--CeEEEEEeccCCCCCCeeEEEEEccc
Q 036467 220 GMTVLVVAFDMNREEFKEI-HRPEYKDSHDKCQIEVGVFRGEFAMFHMWR-E--DRVEIWTMKDFGARESWTRMFVIGRR 295 (369)
Q Consensus 220 ~~~~~il~fD~~~e~~~~i-~~P~~~~~~~~~~~~l~~~~G~L~~~~~~~-~--~~~~iW~l~~~~~~~~W~~~~~i~~~ 295 (369)
-....+++||+.+++|+.. ..|...+ .....+.-+++|.++...- . ++-++|+.+-.+.+..|.++-.++.+
T Consensus 193 ~~n~ev~sy~p~~n~W~~~G~~pf~~~----aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~ 268 (381)
T COG3055 193 FFNKEVLSYDPSTNQWRNLGENPFYGN----AGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAP 268 (381)
T ss_pred cccccccccccccchhhhcCcCcccCc----cCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCC
Confidence 1224799999999999998 5777653 2233333456788887652 1 45566666654456789998776654
Q ss_pred c
Q 036467 296 A 296 (369)
Q Consensus 296 ~ 296 (369)
.
T Consensus 269 ~ 269 (381)
T COG3055 269 I 269 (381)
T ss_pred C
Confidence 4
No 37
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=96.17 E-value=0.11 Score=47.06 Aligned_cols=114 Identities=12% Similarity=0.201 Sum_probs=74.5
Q ss_pred ceEEEEEcCCCceEEcc-CCCCeeeccCCcEEE-CceEEEEeecCCCC-----CceeEEEEEECCCcceeeeCCCCCcCC
Q 036467 174 CEARVYSLASDKWKKIN-GGIPYHISSRAAVCF-NECLIWKASRGLGR-----GMTVLVVAFDMNREEFKEIHRPEYKDS 246 (369)
Q Consensus 174 ~~~~vys~~t~~W~~~~-~~~p~~~~~~~~v~~-~G~lyw~~~~~~~~-----~~~~~il~fD~~~e~~~~i~~P~~~~~ 246 (369)
..+..|+-+++.|+.+. +..|.....++.|.+ .|.+|..++.-... +-.--+-.||+.+.+|..+.++-.-
T Consensus 98 ndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~P-- 175 (521)
T KOG1230|consen 98 NDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGP-- 175 (521)
T ss_pred eeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCC--
Confidence 35678899999999882 233444455666555 47666666543321 0012567899999999999877643
Q ss_pred CCCceeEEEEECCcEEEEEecCC------CeEEEEEeccCCCCCCeeEEEE
Q 036467 247 HDKCQIEVGVFRGEFAMFHMWRE------DRVEIWTMKDFGARESWTRMFV 291 (369)
Q Consensus 247 ~~~~~~~l~~~~G~L~~~~~~~~------~~~~iW~l~~~~~~~~W~~~~~ 291 (369)
+...+..++.++.+|.++.+.++ ---+||.++= ....|.++..
T Consensus 176 S~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdL--dtykW~Klep 224 (521)
T KOG1230|consen 176 SPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDL--DTYKWSKLEP 224 (521)
T ss_pred CCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEec--cceeeeeccC
Confidence 22345678999999999887532 1235677653 2367999876
No 38
>smart00284 OLF Olfactomedin-like domains.
Probab=96.10 E-value=0.37 Score=41.60 Aligned_cols=133 Identities=12% Similarity=0.195 Sum_probs=83.0
Q ss_pred CCCeeeccCCcEEECceEEEEeecCCCCCceeEEEEEECCCcceeee-CCCCCcCCC-------CCceeEEEEECCcEEE
Q 036467 192 GIPYHISSRAAVCFNECLIWKASRGLGRGMTVLVVAFDMNREEFKEI-HRPEYKDSH-------DKCQIEVGVFRGEFAM 263 (369)
Q Consensus 192 ~~p~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~e~~~~i-~~P~~~~~~-------~~~~~~l~~~~G~L~~ 263 (369)
.+|.......-|..||.+|+..... ..|+.||+.+++.... .+|...-.. ....+.|++.+..|.+
T Consensus 69 ~Lp~~~~GtG~VVYngslYY~~~~s------~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWv 142 (255)
T smart00284 69 PLPHAGQGTGVVVYNGSLYFNKFNS------HDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWV 142 (255)
T ss_pred ECCCccccccEEEECceEEEEecCC------ccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEE
Confidence 4455544555599999999976554 3899999999999654 577543111 1245789999988988
Q ss_pred EEecC--CCeEEEEEeccCC--CCCCeeEEEEEcccccccccccccceeeeeEEeeeccCCCCCCeEEEEEC----CCe-
Q 036467 264 FHMWR--EDRVEIWTMKDFG--ARESWTRMFVIGRRALINFDNYAFVHLKPVCEMMNLSNGNGKNFLLIEKG----DGE- 334 (369)
Q Consensus 264 ~~~~~--~~~~~iW~l~~~~--~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~----~~~- 334 (369)
+.... ...|.|-.|+... ..+.|.- .++-.. ....+.+ + |.++.... +.+
T Consensus 143 IYat~~~~g~ivvSkLnp~tL~ve~tW~T--~~~k~s----------a~naFmv------C---GvLY~~~s~~~~~~~I 201 (255)
T smart00284 143 IYATEQNAGKIVISKLNPATLTIENTWIT--TYNKRS----------ASNAFMI------C---GILYVTRSLGSKGEKV 201 (255)
T ss_pred EEeccCCCCCEEEEeeCcccceEEEEEEc--CCCccc----------ccccEEE------e---eEEEEEccCCCCCcEE
Confidence 86653 3568888887521 2223433 111111 1222333 4 67777652 222
Q ss_pred EEEEECCCCeEEEeEEe
Q 036467 335 LILYDFENEIATDFKIQ 351 (369)
Q Consensus 335 ~~~ydl~~~~~~~v~~~ 351 (369)
.++||..|++-+.+.+.
T Consensus 202 ~yayDt~t~~~~~~~i~ 218 (255)
T smart00284 202 FYAYDTNTGKEGHLDIP 218 (255)
T ss_pred EEEEECCCCccceeeee
Confidence 78999999887777654
No 39
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=95.86 E-value=0.0026 Score=55.34 Aligned_cols=43 Identities=19% Similarity=0.362 Sum_probs=38.3
Q ss_pred CcHHHHHHHhccCCc-----cccceeeecccchhcccCChhhHHHHHh
Q 036467 2 LPTDIITDIFTRLPV-----KSLIRFKCVSKSMYALVHNKIFIKKHVN 44 (369)
Q Consensus 2 LP~Dll~eIL~rLp~-----~~l~r~r~VcK~W~~li~~~~F~~~~~~ 44 (369)
|||||+.+||.++=. .++-++.+|||.|+-..++|.|-++...
T Consensus 110 LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~ 157 (366)
T KOG2997|consen 110 LPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACL 157 (366)
T ss_pred CCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHH
Confidence 899999999998765 8999999999999999999998776543
No 40
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=95.77 E-value=0.28 Score=45.85 Aligned_cols=163 Identities=12% Similarity=0.217 Sum_probs=80.8
Q ss_pred ceEEEEcCCccceeeCCCCCCCCCCCcccceEEEEEeeeCCCCCeEEEEEEeeeCCCcccCCCCcceEEEEEcCCC--ce
Q 036467 109 EDIFLFNPSTKKYKKLPVPEFDVPTIETTCFTSLGFGYHQADDDYKVIRSIYLYDKPFVDIDSYECEARVYSLASD--KW 186 (369)
Q Consensus 109 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~vys~~t~--~W 186 (369)
.++.|+|..|+||. +|....+.+. ....+||.+|. -+++.+... . +-....=+.|.+... .|
T Consensus 57 DELHvYNTatnqWf-~PavrGDiPp----gcAA~GfvcdG----trilvFGGM-----v--EYGkYsNdLYELQasRWeW 120 (830)
T KOG4152|consen 57 DELHVYNTATNQWF-APAVRGDIPP----GCAAFGFVCDG----TRILVFGGM-----V--EYGKYSNDLYELQASRWEW 120 (830)
T ss_pred hhhhhhccccceee-cchhcCCCCC----chhhcceEecC----ceEEEEccE-----e--eeccccchHHHhhhhhhhH
Confidence 47899999999997 4554443332 33455666653 345444321 0 112334456666654 55
Q ss_pred EEccCCC------CeeeccCCcEEECceEEEEeecCCCC--------CceeEEEEEECC--Cc--ceeee----CCCCCc
Q 036467 187 KKINGGI------PYHISSRAAVCFNECLIWKASRGLGR--------GMTVLVVAFDMN--RE--EFKEI----HRPEYK 244 (369)
Q Consensus 187 ~~~~~~~------p~~~~~~~~v~~~G~lyw~~~~~~~~--------~~~~~il~fD~~--~e--~~~~i----~~P~~~ 244 (369)
+.+.+.. |.....+.-+.++.++|.+++-..+. .+..-+..+++. +. -|... .+|...
T Consensus 121 krlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pR 200 (830)
T KOG4152|consen 121 KRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPR 200 (830)
T ss_pred hhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCc
Confidence 6662222 22223333377788999998643321 111233334443 33 34332 445444
Q ss_pred CCCCCceeEEEEEC---CcEEEEEecCC-CeEEEEEeccCCCCCCeeEEEE
Q 036467 245 DSHDKCQIEVGVFR---GEFAMFHMWRE-DRVEIWTMKDFGARESWTRMFV 291 (369)
Q Consensus 245 ~~~~~~~~~l~~~~---G~L~~~~~~~~-~~~~iW~l~~~~~~~~W~~~~~ 291 (369)
+.+.. ..-.+-+ .++++...-.. +--++|.|+- ....|.+...
T Consensus 201 ESHTA--ViY~eKDs~~skmvvyGGM~G~RLgDLW~Ldl--~Tl~W~kp~~ 247 (830)
T KOG4152|consen 201 ESHTA--VIYTEKDSKKSKMVVYGGMSGCRLGDLWTLDL--DTLTWNKPSL 247 (830)
T ss_pred cccee--EEEEeccCCcceEEEEcccccccccceeEEec--ceeecccccc
Confidence 22211 1111222 24444443222 3347899986 4578998643
No 41
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=95.35 E-value=0.045 Score=34.11 Aligned_cols=41 Identities=17% Similarity=0.203 Sum_probs=32.1
Q ss_pred CCcEEECceEEEEeec--CCCCCceeEEEEEECCCcceeeeCC
Q 036467 200 RAAVCFNECLIWKASR--GLGRGMTVLVVAFDMNREEFKEIHR 240 (369)
Q Consensus 200 ~~~v~~~G~lyw~~~~--~~~~~~~~~il~fD~~~e~~~~i~~ 240 (369)
+..+..+++||.+++. +........+..||+++.+|+.++.
T Consensus 5 hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~ 47 (49)
T PF07646_consen 5 HSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSP 47 (49)
T ss_pred eEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCC
Confidence 3458999999999988 3333445689999999999998843
No 42
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=95.05 E-value=3.7 Score=40.00 Aligned_cols=41 Identities=17% Similarity=0.305 Sum_probs=37.0
Q ss_pred CcHHHHHHHhccCCccccceeeecccchhcccCChhhHHHH
Q 036467 2 LPTDIITDIFTRLPVKSLIRFKCVSKSMYALVHNKIFIKKH 42 (369)
Q Consensus 2 LP~Dll~eIL~rLp~~~l~r~r~VcK~W~~li~~~~F~~~~ 42 (369)
||.++...||..|+.+++++++.||+.|+.++.+.....+.
T Consensus 111 lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~ 151 (537)
T KOG0274|consen 111 LPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRM 151 (537)
T ss_pred ccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhh
Confidence 79999999999999999999999999999999987765543
No 43
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=94.72 E-value=2.4 Score=36.16 Aligned_cols=140 Identities=11% Similarity=0.051 Sum_probs=77.1
Q ss_pred eEEEEEcCCC--ceEEccCCCCeeeccCCcEEECceEEEEeecCCCCCceeEEEEEECCCccee-eeCCCCCcCCCCCce
Q 036467 175 EARVYSLASD--KWKKINGGIPYHISSRAAVCFNECLIWKASRGLGRGMTVLVVAFDMNREEFK-EIHRPEYKDSHDKCQ 251 (369)
Q Consensus 175 ~~~vys~~t~--~W~~~~~~~p~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~e~~~-~i~~P~~~~~~~~~~ 251 (369)
.+..++..++ .|+.- ......-.....+..+|.+|.....+ .+.++|..+++-. ...++... ..
T Consensus 4 ~l~~~d~~tG~~~W~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~-------~l~~~d~~tG~~~W~~~~~~~~-----~~ 70 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYD-LGPGIGGPVATAVPDGGRVYVASGDG-------NLYALDAKTGKVLWRFDLPGPI-----SG 70 (238)
T ss_dssp EEEEEETTTTEEEEEEE-CSSSCSSEEETEEEETTEEEEEETTS-------EEEEEETTTSEEEEEEECSSCG-----GS
T ss_pred EEEEEECCCCCEEEEEE-CCCCCCCccceEEEeCCEEEEEcCCC-------EEEEEECCCCCEEEEeeccccc-----cc
Confidence 4567777665 78764 21111111112355788888885444 8999998765432 23444443 11
Q ss_pred eEEEEECCcEEEEEecCCCeEEEEEeccCCCCCCeeE-EEEEcccccccccccccceeeeeEEeeeccCCCCCCeEEEEE
Q 036467 252 IEVGVFRGEFAMFHMWREDRVEIWTMKDFGARESWTR-MFVIGRRALINFDNYAFVHLKPVCEMMNLSNGNGKNFLLIEK 330 (369)
Q Consensus 252 ~~l~~~~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 330 (369)
. ....+|++++... .. .++.++....+..|.. ...-+..... ......+ . + +.+++..
T Consensus 71 ~-~~~~~~~v~v~~~--~~--~l~~~d~~tG~~~W~~~~~~~~~~~~~--------~~~~~~~----~-~---~~~~~~~ 129 (238)
T PF13360_consen 71 A-PVVDGGRVYVGTS--DG--SLYALDAKTGKVLWSIYLTSSPPAGVR--------SSSSPAV----D-G---DRLYVGT 129 (238)
T ss_dssp G-EEEETTEEEEEET--TS--EEEEEETTTSCEEEEEEE-SSCTCSTB----------SEEEE----E-T---TEEEEEE
T ss_pred e-eeecccccccccc--ee--eeEecccCCcceeeeeccccccccccc--------cccCceE----e-c---CEEEEEe
Confidence 1 3667788877763 22 5666663224456874 3331211110 0111222 2 3 6777777
Q ss_pred CCCeEEEEECCCCeEEEe
Q 036467 331 GDGELILYDFENEIATDF 348 (369)
Q Consensus 331 ~~~~~~~ydl~~~~~~~v 348 (369)
.++.++.+|+++++..+-
T Consensus 130 ~~g~l~~~d~~tG~~~w~ 147 (238)
T PF13360_consen 130 SSGKLVALDPKTGKLLWK 147 (238)
T ss_dssp TCSEEEEEETTTTEEEEE
T ss_pred ccCcEEEEecCCCcEEEE
Confidence 677899999999987444
No 44
>PF13964 Kelch_6: Kelch motif
Probab=94.65 E-value=0.11 Score=32.51 Aligned_cols=24 Identities=21% Similarity=0.449 Sum_probs=20.9
Q ss_pred CCceEEEEcCCccceeeCCCCCCC
Q 036467 107 CNEDIFLFNPSTKKYKKLPVPEFD 130 (369)
Q Consensus 107 ~~~~~~V~NP~T~~~~~LP~~~~~ 130 (369)
..+++.++||.|++|..+|+++.+
T Consensus 26 ~~~~v~~yd~~t~~W~~~~~mp~p 49 (50)
T PF13964_consen 26 YSNDVERYDPETNTWEQLPPMPTP 49 (50)
T ss_pred ccccEEEEcCCCCcEEECCCCCCC
Confidence 357899999999999999998754
No 45
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=94.37 E-value=0.063 Score=33.39 Aligned_cols=41 Identities=15% Similarity=0.226 Sum_probs=24.7
Q ss_pred CcEEE-CceEEEEeecCCCCCceeEEEEEECCCcceeee-CCC
Q 036467 201 AAVCF-NECLIWKASRGLGRGMTVLVVAFDMNREEFKEI-HRP 241 (369)
Q Consensus 201 ~~v~~-~G~lyw~~~~~~~~~~~~~il~fD~~~e~~~~i-~~P 241 (369)
..+.+ ++.+|..++..........+..||+.+++|+.+ ++|
T Consensus 6 ~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 6 SAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS-
T ss_pred EEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCC
Confidence 34556 589999987654322345788999999999999 444
No 46
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=93.77 E-value=3.3 Score=35.41 Aligned_cols=119 Identities=11% Similarity=0.162 Sum_probs=65.5
Q ss_pred EECceEEEEeecCCCCCceeEEEEEECCCcceeeeCCCCCcCCCCCc-eeEEEEE--CC--cEEEEEec----CCCeEEE
Q 036467 204 CFNECLIWKASRGLGRGMTVLVVAFDMNREEFKEIHRPEYKDSHDKC-QIEVGVF--RG--EFAMFHMW----REDRVEI 274 (369)
Q Consensus 204 ~~~G~lyw~~~~~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~-~~~l~~~--~G--~L~~~~~~----~~~~~~i 274 (369)
.+||.+ ++.... .+...|+.|+++..+|.|+........ ...++-. .+ |+..+... .....+|
T Consensus 3 sCnGLl-c~~~~~-------~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~V 74 (230)
T TIGR01640 3 PCDGLI-CFSYGK-------RLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQV 74 (230)
T ss_pred ccceEE-EEecCC-------cEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEE
Confidence 468888 444332 799999999999999766532100111 1222221 12 33333221 1246677
Q ss_pred EEeccCCCCCCeeEEEEEcccccccccccccceeeeeEEeeeccCCCCCCeEEEEECC-----C-eEEEEECCCCeEEE-
Q 036467 275 WTMKDFGARESWTRMFVIGRRALINFDNYAFVHLKPVCEMMNLSNGNGKNFLLIEKGD-----G-ELILYDFENEIATD- 347 (369)
Q Consensus 275 W~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~-~~~~ydl~~~~~~~- 347 (369)
..+.. .+|..+...+. ... . ...++.+ + |.++..... . .++.||+++++++.
T Consensus 75 ys~~~----~~Wr~~~~~~~-~~~------~-~~~~v~~------~---G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~ 133 (230)
T TIGR01640 75 YTLGS----NSWRTIECSPP-HHP------L-KSRGVCI------N---GVLYYLAYTLKTNPDYFIVSFDVSSERFKEF 133 (230)
T ss_pred EEeCC----CCccccccCCC-Ccc------c-cCCeEEE------C---CEEEEEEEECCCCCcEEEEEEEcccceEeee
Confidence 77764 47998763221 111 0 1123444 4 677776421 1 59999999999995
Q ss_pred eEEe
Q 036467 348 FKIQ 351 (369)
Q Consensus 348 v~~~ 351 (369)
+..+
T Consensus 134 i~~P 137 (230)
T TIGR01640 134 IPLP 137 (230)
T ss_pred eecC
Confidence 6544
No 47
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=93.17 E-value=4.3 Score=37.15 Aligned_cols=112 Identities=9% Similarity=0.061 Sum_probs=63.8
Q ss_pred EEEEEECCCcceeeeCCCCCcCCCCCceeEEEEECCcEEEEEecCC---C------eEEEEEecc----CCCCCCeeEEE
Q 036467 224 LVVAFDMNREEFKEIHRPEYKDSHDKCQIEVGVFRGEFAMFHMWRE---D------RVEIWTMKD----FGARESWTRMF 290 (369)
Q Consensus 224 ~il~fD~~~e~~~~i~~P~~~~~~~~~~~~l~~~~G~L~~~~~~~~---~------~~~iW~l~~----~~~~~~W~~~~ 290 (369)
..+.||.++...... |... ........+..+|+||++..... . .+++-.... ....+.|.-..
T Consensus 87 ~t~vyDt~t~av~~~--P~l~--~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~~~~~~w~W~~ 162 (342)
T PF07893_consen 87 RTLVYDTDTRAVATG--PRLH--SPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDDPSPEESWSWRS 162 (342)
T ss_pred CeEEEECCCCeEecc--CCCC--CCCcceEEEEeCCeEEEeeccCccccccCccceeEEEeccccccccccCCCcceEEc
Confidence 688999999887744 3322 11123344555888999887521 1 556654431 12335566544
Q ss_pred EEcccccccccccccce--eeeeEEeeeccCCCCCCeEEEEECCC--eEEEEECCCCeEEEeE
Q 036467 291 VIGRRALINFDNYAFVH--LKPVCEMMNLSNGNGKNFLLIEKGDG--ELILYDFENEIATDFK 349 (369)
Q Consensus 291 ~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~ydl~~~~~~~v~ 349 (369)
++.++.. .+ ..... +....+ . + |..|++...+. ..+.||.++.+|+++.
T Consensus 163 -LP~PPf~-~~-~~~~~~~i~sYav----v-~--g~~I~vS~~~~~~GTysfDt~~~~W~~~G 215 (342)
T PF07893_consen 163 -LPPPPFV-RD-RRYSDYRITSYAV----V-D--GRTIFVSVNGRRWGTYSFDTESHEWRKHG 215 (342)
T ss_pred -CCCCCcc-cc-CCcccceEEEEEE----e-c--CCeEEEEecCCceEEEEEEcCCcceeecc
Confidence 4433322 11 00101 222333 3 3 47888877654 6999999999999984
No 48
>smart00612 Kelch Kelch domain.
Probab=92.99 E-value=0.23 Score=30.07 Aligned_cols=35 Identities=20% Similarity=0.359 Sum_probs=25.0
Q ss_pred CcceEEEEEcCCCceEEccCCCCeeeccCCcEEECc
Q 036467 172 YECEARVYSLASDKWKKINGGIPYHISSRAAVCFNE 207 (369)
Q Consensus 172 ~~~~~~vys~~t~~W~~~~~~~p~~~~~~~~v~~~G 207 (369)
....+++|+++++.|+.+ +.++........+.++|
T Consensus 13 ~~~~v~~yd~~~~~W~~~-~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 13 RLKSVEVYDPETNKWTPL-PSMPTPRSGHGVAVING 47 (47)
T ss_pred eeeeEEEECCCCCeEccC-CCCCCccccceEEEeCC
Confidence 346789999999999998 77776654444444443
No 49
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=92.98 E-value=7.9 Score=36.16 Aligned_cols=107 Identities=19% Similarity=0.255 Sum_probs=60.7
Q ss_pred CcEEECceEEEEeecCCCCCceeEEEEEECCCc--ceeeeCCCCCcCCCCCceeEEEEECCcEEEEEecCCCeEEEEEec
Q 036467 201 AAVCFNECLIWKASRGLGRGMTVLVVAFDMNRE--EFKEIHRPEYKDSHDKCQIEVGVFRGEFAMFHMWREDRVEIWTMK 278 (369)
Q Consensus 201 ~~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~e--~~~~i~~P~~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~~iW~l~ 278 (369)
.++..+|.+|.....+ .+.++|+.+. .|+. +++.. ..++..+|+|++.... .. +..++
T Consensus 251 sP~v~~~~vy~~~~~g-------~l~ald~~tG~~~W~~-~~~~~--------~~~~~~~~~vy~~~~~--g~--l~ald 310 (394)
T PRK11138 251 TPVVVGGVVYALAYNG-------NLVALDLRSGQIVWKR-EYGSV--------NDFAVDGGRIYLVDQN--DR--VYALD 310 (394)
T ss_pred CcEEECCEEEEEEcCC-------eEEEEECCCCCEEEee-cCCCc--------cCcEEECCEEEEEcCC--Ce--EEEEE
Confidence 4578899999877654 8999999875 4643 22110 1234456677766532 12 33333
Q ss_pred cCCCCCCeeEEEEEcccccccccccccceeeeeEEeeeccCCCCCCeEEEEECCCeEEEEECCCCeEEE
Q 036467 279 DFGARESWTRMFVIGRRALINFDNYAFVHLKPVCEMMNLSNGNGKNFLLIEKGDGELILYDFENEIATD 347 (369)
Q Consensus 279 ~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ydl~~~~~~~ 347 (369)
-......|.... +.. .....|... + +.|++...++.++.+|.++++...
T Consensus 311 ~~tG~~~W~~~~-~~~----------~~~~sp~v~------~---g~l~v~~~~G~l~~ld~~tG~~~~ 359 (394)
T PRK11138 311 TRGGVELWSQSD-LLH----------RLLTAPVLY------N---GYLVVGDSEGYLHWINREDGRFVA 359 (394)
T ss_pred CCCCcEEEcccc-cCC----------CcccCCEEE------C---CEEEEEeCCCEEEEEECCCCCEEE
Confidence 222234464311 000 011344444 3 678887777779999999988644
No 50
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=92.85 E-value=5.4 Score=33.92 Aligned_cols=192 Identities=14% Similarity=0.143 Sum_probs=94.2
Q ss_pred ecccEEEeeccCCceEEEEcCCccceeeCCCCCCCCCCCcccceEEEEEeeeCCCCCeEEEEEEeeeCCCcccCCCCcce
Q 036467 96 CNGLLCISDQSCNEDIFLFNPSTKKYKKLPVPEFDVPTIETTCFTSLGFGYHQADDDYKVIRSIYLYDKPFVDIDSYECE 175 (369)
Q Consensus 96 ~~GLl~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~ 175 (369)
.+|.++... ....++.+|+.|++...--..+..... . +...+=+|+.... ...
T Consensus 35 ~~~~v~~~~--~~~~l~~~d~~tG~~~W~~~~~~~~~~----~---------~~~~~~~v~v~~~------------~~~ 87 (238)
T PF13360_consen 35 DGGRVYVAS--GDGNLYALDAKTGKVLWRFDLPGPISG----A---------PVVDGGRVYVGTS------------DGS 87 (238)
T ss_dssp ETTEEEEEE--TTSEEEEEETTTSEEEEEEECSSCGGS----G---------EEEETTEEEEEET------------TSE
T ss_pred eCCEEEEEc--CCCEEEEEECCCCCEEEEeeccccccc----e---------eeecccccccccc------------eee
Confidence 677777665 688999999999887643332221111 1 0111112222211 126
Q ss_pred EEEEEcCCC--ceEE-ccCCCCe-eeccCCc-EEECceEEEEeecCCCCCceeEEEEEECCCcc--eeee-CCCCCcCC-
Q 036467 176 ARVYSLASD--KWKK-INGGIPY-HISSRAA-VCFNECLIWKASRGLGRGMTVLVVAFDMNREE--FKEI-HRPEYKDS- 246 (369)
Q Consensus 176 ~~vys~~t~--~W~~-~~~~~p~-~~~~~~~-v~~~G~lyw~~~~~~~~~~~~~il~fD~~~e~--~~~i-~~P~~~~~- 246 (369)
+..++..++ .|+. . ...+. ....... ...++.+|.....+ .|.++|+.+.+ |..- ..|.....
T Consensus 88 l~~~d~~tG~~~W~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g-------~l~~~d~~tG~~~w~~~~~~~~~~~~~ 159 (238)
T PF13360_consen 88 LYALDAKTGKVLWSIYL-TSSPPAGVRSSSSPAVDGDRLYVGTSSG-------KLVALDPKTGKLLWKYPVGEPRGSSPI 159 (238)
T ss_dssp EEEEETTTSCEEEEEEE--SSCTCSTB--SEEEEETTEEEEEETCS-------EEEEEETTTTEEEEEEESSTT-SS--E
T ss_pred eEecccCCcceeeeecc-ccccccccccccCceEecCEEEEEeccC-------cEEEEecCCCcEEEEeecCCCCCCcce
Confidence 666776554 8984 4 22121 1112222 33456666665544 89999999764 4432 33332210
Q ss_pred --CCCceeEEEEECCcEEEEEecCCCeEEEEEeccCCCCCCeeEEEEEcccccccccccccceeeeeEEeeeccCCCCCC
Q 036467 247 --HDKCQIEVGVFRGEFAMFHMWREDRVEIWTMKDFGARESWTRMFVIGRRALINFDNYAFVHLKPVCEMMNLSNGNGKN 324 (369)
Q Consensus 247 --~~~~~~~l~~~~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (369)
.......++..+|.+++.... ...+.+ -+.. ....|++. +. . ...... ..+ +
T Consensus 160 ~~~~~~~~~~~~~~~~v~~~~~~-g~~~~~-d~~t--g~~~w~~~--~~--~-----------~~~~~~----~~~---~ 213 (238)
T PF13360_consen 160 SSFSDINGSPVISDGRVYVSSGD-GRVVAV-DLAT--GEKLWSKP--IS--G-----------IYSLPS----VDG---G 213 (238)
T ss_dssp EEETTEEEEEECCTTEEEEECCT-SSEEEE-ETTT--TEEEEEEC--SS--------------ECECEE----CCC---T
T ss_pred eeecccccceEEECCEEEEEcCC-CeEEEE-ECCC--CCEEEEec--CC--C-----------ccCCce----eeC---C
Confidence 001123444445755555432 222322 2221 21225221 11 1 111122 333 7
Q ss_pred eEEEEECCCeEEEEECCCCeEEEe
Q 036467 325 FLLIEKGDGELILYDFENEIATDF 348 (369)
Q Consensus 325 ~i~~~~~~~~~~~ydl~~~~~~~v 348 (369)
.+++...++.++++|++|++..+.
T Consensus 214 ~l~~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 214 TLYVTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEE
T ss_pred EEEEEeCCCEEEEEECCCCCEEeE
Confidence 787777677899999999998764
No 51
>smart00612 Kelch Kelch domain.
Probab=92.36 E-value=0.51 Score=28.48 Aligned_cols=35 Identities=9% Similarity=0.054 Sum_probs=23.5
Q ss_pred EEEEeecCCCCCceeEEEEEECCCcceeee-CCCCCc
Q 036467 209 LIWKASRGLGRGMTVLVVAFDMNREEFKEI-HRPEYK 244 (369)
Q Consensus 209 lyw~~~~~~~~~~~~~il~fD~~~e~~~~i-~~P~~~ 244 (369)
+|.+++... ......+..||+.+.+|+.+ ++|...
T Consensus 2 iyv~GG~~~-~~~~~~v~~yd~~~~~W~~~~~~~~~r 37 (47)
T smart00612 2 IYVVGGFDG-GQRLKSVEVYDPETNKWTPLPSMPTPR 37 (47)
T ss_pred EEEEeCCCC-CceeeeEEEECCCCCeEccCCCCCCcc
Confidence 566665432 12245789999999999988 555543
No 52
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=91.91 E-value=6.3 Score=34.00 Aligned_cols=156 Identities=13% Similarity=0.149 Sum_probs=86.9
Q ss_pred cceEEEEEcCCCceEEccCCCCeeec-cCCcEEECceEEEEeecCCCCCceeEEEEEECCC----cceeeeCCCCCcCCC
Q 036467 173 ECEARVYSLASDKWKKINGGIPYHIS-SRAAVCFNECLIWKASRGLGRGMTVLVVAFDMNR----EEFKEIHRPEYKDSH 247 (369)
Q Consensus 173 ~~~~~vys~~t~~W~~~~~~~p~~~~-~~~~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~----e~~~~i~~P~~~~~~ 247 (369)
.....+|++.++++|.+ .. ....+ ....+.-||.+.-.++...+. ..+-.|++.+ ..|... |.... .
T Consensus 45 ~a~s~~yD~~tn~~rpl-~v-~td~FCSgg~~L~dG~ll~tGG~~~G~---~~ir~~~p~~~~~~~~w~e~--~~~m~-~ 116 (243)
T PF07250_consen 45 PAHSVEYDPNTNTFRPL-TV-QTDTFCSGGAFLPDGRLLQTGGDNDGN---KAIRIFTPCTSDGTCDWTES--PNDMQ-S 116 (243)
T ss_pred eEEEEEEecCCCcEEec-cC-CCCCcccCcCCCCCCCEEEeCCCCccc---cceEEEecCCCCCCCCceEC--ccccc-C
Confidence 44567899999999988 32 33333 333477789888777664432 3677888775 456544 22121 1
Q ss_pred CCceeEEEEE-CCcEEEEEecCCCeEEEEEeccCC-CCCCeeEEEEEcccccccccccccceeeee-EEeeeccCCCCCC
Q 036467 248 DKCQIEVGVF-RGEFAMFHMWREDRVEIWTMKDFG-ARESWTRMFVIGRRALINFDNYAFVHLKPV-CEMMNLSNGNGKN 324 (369)
Q Consensus 248 ~~~~~~l~~~-~G~L~~~~~~~~~~~~iW~l~~~~-~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 324 (369)
....+....+ +|++.++.+......+.|=-.... ....|..+..... .......|+ .+ ..+ |
T Consensus 117 ~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~--------~~~~nlYP~~~l----lPd---G 181 (243)
T PF07250_consen 117 GRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSD--------TLPNNLYPFVHL----LPD---G 181 (243)
T ss_pred CCccccceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhc--------cCccccCceEEE----cCC---C
Confidence 1244555555 599999998765455554332111 1111211111111 111124454 34 556 8
Q ss_pred eEEEEECCCeEEEEECCCCeE-EEe-EEec
Q 036467 325 FLLIEKGDGELILYDFENEIA-TDF-KIQR 352 (369)
Q Consensus 325 ~i~~~~~~~~~~~ydl~~~~~-~~v-~~~~ 352 (369)
+||+....+ -..||.+++++ +.+ .+++
T Consensus 182 ~lFi~an~~-s~i~d~~~n~v~~~lP~lPg 210 (243)
T PF07250_consen 182 NLFIFANRG-SIIYDYKTNTVVRTLPDLPG 210 (243)
T ss_pred CEEEEEcCC-cEEEeCCCCeEEeeCCCCCC
Confidence 888877654 77889999976 444 3444
No 53
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa.
Probab=91.91 E-value=1.5 Score=33.87 Aligned_cols=75 Identities=17% Similarity=0.251 Sum_probs=53.3
Q ss_pred EEEEEECCCc--ceeeeCCCCCcCCCC---------CceeEEEEECCcEEEEEecC---------CCeEEEEEeccC-CC
Q 036467 224 LVVAFDMNRE--EFKEIHRPEYKDSHD---------KCQIEVGVFRGEFAMFHMWR---------EDRVEIWTMKDF-GA 282 (369)
Q Consensus 224 ~il~fD~~~e--~~~~i~~P~~~~~~~---------~~~~~l~~~~G~L~~~~~~~---------~~~~~iW~l~~~-~~ 282 (369)
.|+..|+..+ .+..|++|....... .....+++.+|+|-.+.... .-.+.+|.|... +.
T Consensus 7 GIL~CD~~~~~p~l~~vpLP~~~~~~~~~~~~~~~~~~~R~v~v~~G~ikfV~i~~~~~~~~~~~~~~vt~Wtl~~~~~~ 86 (131)
T PF07762_consen 7 GILFCDVFDDSPVLRFVPLPPPCPPNRRDDRPRGSPESYRDVGVSGGKIKFVEIDGYEDDGPPSGGWTVTTWTLKDPEGS 86 (131)
T ss_pred CEEEEECCCCCccEEEEeCCCccccCcccccccCCchhCceEEecCCCEEEEEEecccCCCcccCCcEEEEEEeccCCCC
Confidence 6888898865 667788887542211 12336788899998877642 236899999974 23
Q ss_pred CCCeeEEEEEcccccc
Q 036467 283 RESWTRMFVIGRRALI 298 (369)
Q Consensus 283 ~~~W~~~~~i~~~~~~ 298 (369)
...|.+-++++...+.
T Consensus 87 ~~~W~~d~~v~~~diw 102 (131)
T PF07762_consen 87 SWEWKKDCEVDLSDIW 102 (131)
T ss_pred CCCEEEeEEEEhhhcc
Confidence 4679999999987775
No 54
>PLN02772 guanylate kinase
Probab=91.53 E-value=1.5 Score=40.58 Aligned_cols=74 Identities=11% Similarity=0.107 Sum_probs=53.0
Q ss_pred CcEEECceEEEEeecCCCCCceeEEEEEECCCcceeee----CCCCCcCCCCCceeEEEEE-CCcEEEEEecCCCeEEEE
Q 036467 201 AAVCFNECLIWKASRGLGRGMTVLVVAFDMNREEFKEI----HRPEYKDSHDKCQIEVGVF-RGEFAMFHMWREDRVEIW 275 (369)
Q Consensus 201 ~~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~e~~~~i----~~P~~~~~~~~~~~~l~~~-~G~L~~~~~~~~~~~~iW 275 (369)
..|.+++++|.+++..+.......+.+||..+.+|+.- ..|... .....+.+ +++|.++.......-+||
T Consensus 29 tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r-----~GhSa~v~~~~rilv~~~~~~~~~~~w 103 (398)
T PLN02772 29 TSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPC-----KGYSAVVLNKDRILVIKKGSAPDDSIW 103 (398)
T ss_pred eeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCC-----CcceEEEECCceEEEEeCCCCCccceE
Confidence 44999999999997665332346899999999999775 234333 22334445 689999987766567899
Q ss_pred Eecc
Q 036467 276 TMKD 279 (369)
Q Consensus 276 ~l~~ 279 (369)
-|+-
T Consensus 104 ~l~~ 107 (398)
T PLN02772 104 FLEV 107 (398)
T ss_pred EEEc
Confidence 9984
No 55
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=91.50 E-value=11 Score=34.51 Aligned_cols=131 Identities=16% Similarity=0.177 Sum_probs=74.1
Q ss_pred EEeeecccEEEeeccCCceEEEEcCCccceeeCCCCCCCCCCCcccceEEEEEeeeCCCCCeEEEEEEeeeCCCcccCC-
Q 036467 92 ISGSCNGLLCISDQSCNEDIFLFNPSTKKYKKLPVPEFDVPTIETTCFTSLGFGYHQADDDYKVIRSIYLYDKPFVDID- 170 (369)
Q Consensus 92 ~~~s~~GLl~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~- 170 (369)
..+-.+.-|+..+ ......|+++.|+....+|.+..... ....+.+| + ++..+... +.....
T Consensus 71 F~al~gskIv~~d--~~~~t~vyDt~t~av~~~P~l~~pk~-----~pisv~VG-----~--~LY~m~~~---~~~~~~~ 133 (342)
T PF07893_consen 71 FFALHGSKIVAVD--QSGRTLVYDTDTRAVATGPRLHSPKR-----CPISVSVG-----D--KLYAMDRS---PFPEPAG 133 (342)
T ss_pred EEEecCCeEEEEc--CCCCeEEEECCCCeEeccCCCCCCCc-----ceEEEEeC-----C--eEEEeecc---Ccccccc
Confidence 3333444555554 45779999999999999998765321 11222221 1 24444431 111000
Q ss_pred -CCcceEEEEEc----------CCCceEEccCCCCeeeccC------Cc--EEECceEEEEeecCCCCCceeEEEEEECC
Q 036467 171 -SYECEARVYSL----------ASDKWKKINGGIPYHISSR------AA--VCFNECLIWKASRGLGRGMTVLVVAFDMN 231 (369)
Q Consensus 171 -~~~~~~~vys~----------~t~~W~~~~~~~p~~~~~~------~~--v~~~G~lyw~~~~~~~~~~~~~il~fD~~ 231 (369)
.....+|+++. .+.+|+.+ +.+|+..... .+ |. +|.-.|+...+.. ..-.+||..
T Consensus 134 ~~~~~~FE~l~~~~~~~~~~~~~~w~W~~L-P~PPf~~~~~~~~~~i~sYavv-~g~~I~vS~~~~~----~GTysfDt~ 207 (342)
T PF07893_consen 134 RPDFPCFEALVYRPPPDDPSPEESWSWRSL-PPPPFVRDRRYSDYRITSYAVV-DGRTIFVSVNGRR----WGTYSFDTE 207 (342)
T ss_pred CccceeEEEeccccccccccCCCcceEEcC-CCCCccccCCcccceEEEEEEe-cCCeEEEEecCCc----eEEEEEEcC
Confidence 00115566532 23488888 6666543321 12 44 8887777655421 257899999
Q ss_pred Ccceeee---CCCCCcC
Q 036467 232 REEFKEI---HRPEYKD 245 (369)
Q Consensus 232 ~e~~~~i---~~P~~~~ 245 (369)
+.+|+.. .||...+
T Consensus 208 ~~~W~~~GdW~LPF~G~ 224 (342)
T PF07893_consen 208 SHEWRKHGDWMLPFHGQ 224 (342)
T ss_pred CcceeeccceecCcCCc
Confidence 9999998 7888653
No 56
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=91.31 E-value=0.86 Score=28.19 Aligned_cols=39 Identities=18% Similarity=0.152 Sum_probs=27.9
Q ss_pred CceEEEEeecC-CCCCceeEEEEEECCCcceeee-CCCCCc
Q 036467 206 NECLIWKASRG-LGRGMTVLVVAFDMNREEFKEI-HRPEYK 244 (369)
Q Consensus 206 ~G~lyw~~~~~-~~~~~~~~il~fD~~~e~~~~i-~~P~~~ 244 (369)
++.+|..++.. ........+..||+.+.+|+.+ ++|...
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R 41 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPR 41 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCc
Confidence 46777777765 2333446789999999999999 555544
No 57
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=90.49 E-value=5.5 Score=34.72 Aligned_cols=123 Identities=12% Similarity=0.106 Sum_probs=71.9
Q ss_pred EEeeecccEEEeeccCCceEEEEcCCccceeeCCCCCCCCCCCcccceEEEEEeeeCCCCCeEEEEEEeeeCCCcccCCC
Q 036467 92 ISGSCNGLLCISDQSCNEDIFLFNPSTKKYKKLPVPEFDVPTIETTCFTSLGFGYHQADDDYKVIRSIYLYDKPFVDIDS 171 (369)
Q Consensus 92 ~~~s~~GLl~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~ 171 (369)
+++.-+|=|-...- ..+-+...||.++.-..+|++...... .-..+.|+.. -+++.. .
T Consensus 194 i~atpdGsvwyasl-agnaiaridp~~~~aev~p~P~~~~~g-------sRriwsdpig----~~witt----------w 251 (353)
T COG4257 194 ICATPDGSVWYASL-AGNAIARIDPFAGHAEVVPQPNALKAG-------SRRIWSDPIG----RAWITT----------W 251 (353)
T ss_pred eEECCCCcEEEEec-cccceEEcccccCCcceecCCCccccc-------ccccccCccC----cEEEec----------c
Confidence 55555565544431 334567789999988888887652111 1123334332 123322 1
Q ss_pred CcceEEEEEcCCCceEEccCCCCeeeccCCc--EEECceEEEEeecCCCCCceeEEEEEECCCcceeeeCCCCCc
Q 036467 172 YECEARVYSLASDKWKKINGGIPYHISSRAA--VCFNECLIWKASRGLGRGMTVLVVAFDMNREEFKEIHRPEYK 244 (369)
Q Consensus 172 ~~~~~~vys~~t~~W~~~~~~~p~~~~~~~~--v~~~G~lyw~~~~~~~~~~~~~il~fD~~~e~~~~i~~P~~~ 244 (369)
..-.+.-|+..+.+|+.- .+|-.-....+ |.-.|.+ |+..-+. ..|..||+++++|++++.|..-
T Consensus 252 g~g~l~rfdPs~~sW~ey--pLPgs~arpys~rVD~~grV-W~sea~a-----gai~rfdpeta~ftv~p~pr~n 318 (353)
T COG4257 252 GTGSLHRFDPSVTSWIEY--PLPGSKARPYSMRVDRHGRV-WLSEADA-----GAIGRFDPETARFTVLPIPRPN 318 (353)
T ss_pred CCceeeEeCcccccceee--eCCCCCCCcceeeeccCCcE-Eeecccc-----CceeecCcccceEEEecCCCCC
Confidence 345678889999999877 22322111122 4444444 5543332 3899999999999999888654
No 58
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=89.86 E-value=0.65 Score=28.29 Aligned_cols=24 Identities=17% Similarity=0.523 Sum_probs=19.7
Q ss_pred CCCcceEEEEEcCCCceEEccCCCC
Q 036467 170 DSYECEARVYSLASDKWKKINGGIP 194 (369)
Q Consensus 170 ~~~~~~~~vys~~t~~W~~~~~~~p 194 (369)
......+++|+..+++|+.+ +.||
T Consensus 24 ~~~~~~v~~yd~~~~~W~~~-~~mp 47 (47)
T PF01344_consen 24 NQPTNSVEVYDPETNTWEEL-PPMP 47 (47)
T ss_dssp SSBEEEEEEEETTTTEEEEE-EEES
T ss_pred CceeeeEEEEeCCCCEEEEc-CCCC
Confidence 45677899999999999998 6554
No 59
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=85.88 E-value=22 Score=30.60 Aligned_cols=204 Identities=14% Similarity=0.184 Sum_probs=106.0
Q ss_pred eecccEEEeeccCCceEEEEcCCccceeeCCCCCCCCCCCcccceEEEEEeeeCCCCCeEEEEEEeeeCCCcccCCCCcc
Q 036467 95 SCNGLLCISDQSCNEDIFLFNPSTKKYKKLPVPEFDVPTIETTCFTSLGFGYHQADDDYKVIRSIYLYDKPFVDIDSYEC 174 (369)
Q Consensus 95 s~~GLl~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~ 174 (369)
..+|-|.+.+. ..++++.++|.+++...+..+. ..++.++...+.+ +++ . ..
T Consensus 9 ~~~g~l~~~D~-~~~~i~~~~~~~~~~~~~~~~~------------~~G~~~~~~~g~l-~v~--~------------~~ 60 (246)
T PF08450_consen 9 PRDGRLYWVDI-PGGRIYRVDPDTGEVEVIDLPG------------PNGMAFDRPDGRL-YVA--D------------SG 60 (246)
T ss_dssp TTTTEEEEEET-TTTEEEEEETTTTEEEEEESSS------------EEEEEEECTTSEE-EEE--E------------TT
T ss_pred CCCCEEEEEEc-CCCEEEEEECCCCeEEEEecCC------------CceEEEEccCCEE-EEE--E------------cC
Confidence 33555655553 5678999999998886644332 2255555322222 222 1 23
Q ss_pred eEEEEEcCCCceEEccCCCC-----eeeccCCcEEECceEEEEeecCCCCCce--eEEEEEECCCcceeeeCCCCCcCCC
Q 036467 175 EARVYSLASDKWKKINGGIP-----YHISSRAAVCFNECLIWKASRGLGRGMT--VLVVAFDMNREEFKEIHRPEYKDSH 247 (369)
Q Consensus 175 ~~~vys~~t~~W~~~~~~~p-----~~~~~~~~v~~~G~lyw~~~~~~~~~~~--~~il~fD~~~e~~~~i~~P~~~~~~ 247 (369)
...+++..++.++.+ ...+ ......-.+.-+|.+|+-.......... -.|..+|.. .+.+.+.-....
T Consensus 61 ~~~~~d~~~g~~~~~-~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~--- 135 (246)
T PF08450_consen 61 GIAVVDPDTGKVTVL-ADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGF--- 135 (246)
T ss_dssp CEEEEETTTTEEEEE-EEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESS---
T ss_pred ceEEEecCCCcEEEE-eeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCccc---
Confidence 446668899999877 3321 1111111256689988876654322222 479999999 554444111110
Q ss_pred CCceeEEEEE-CCc-EEEEEecCCCeEEEEEeccCCCCCCeeEEEEE-cccccccccccccceeeeeEEeeeccCCCCCC
Q 036467 248 DKCQIEVGVF-RGE-FAMFHMWREDRVEIWTMKDFGARESWTRMFVI-GRRALINFDNYAFVHLKPVCEMMNLSNGNGKN 324 (369)
Q Consensus 248 ~~~~~~l~~~-~G~-L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (369)
... ++.. +|+ |++.... ... ||.++-...+..+.....+ ...... ....-+.+ ..+ |
T Consensus 136 -pNG--i~~s~dg~~lyv~ds~-~~~--i~~~~~~~~~~~~~~~~~~~~~~~~~-------g~pDG~~v----D~~---G 195 (246)
T PF08450_consen 136 -PNG--IAFSPDGKTLYVADSF-NGR--IWRFDLDADGGELSNRRVFIDFPGGP-------GYPDGLAV----DSD---G 195 (246)
T ss_dssp -EEE--EEEETTSSEEEEEETT-TTE--EEEEEEETTTCCEEEEEEEEE-SSSS-------CEEEEEEE----BTT---S
T ss_pred -ccc--eEECCcchheeecccc-cce--eEEEeccccccceeeeeeEEEcCCCC-------cCCCcceE----cCC---C
Confidence 112 2333 454 5554432 333 6666643233346544433 222210 01222444 555 7
Q ss_pred eEEEEE-CCCeEEEEECCCCeEEEeEEe
Q 036467 325 FLLIEK-GDGELILYDFENEIATDFKIQ 351 (369)
Q Consensus 325 ~i~~~~-~~~~~~~ydl~~~~~~~v~~~ 351 (369)
.|++.. ...++..||++.+....+..+
T Consensus 196 ~l~va~~~~~~I~~~~p~G~~~~~i~~p 223 (246)
T PF08450_consen 196 NLWVADWGGGRIVVFDPDGKLLREIELP 223 (246)
T ss_dssp -EEEEEETTTEEEEEETTSCEEEEEE-S
T ss_pred CEEEEEcCCCEEEEECCCccEEEEEcCC
Confidence 788764 456799999997778888877
No 60
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=85.83 E-value=29 Score=32.04 Aligned_cols=107 Identities=16% Similarity=0.159 Sum_probs=58.7
Q ss_pred CcEEECceEEEEeecCCCCCceeEEEEEECCCcc--eeeeCCCCCcCCCCCceeEEEEECCcEEEEEecCCCeEEEEEec
Q 036467 201 AAVCFNECLIWKASRGLGRGMTVLVVAFDMNREE--FKEIHRPEYKDSHDKCQIEVGVFRGEFAMFHMWREDRVEIWTMK 278 (369)
Q Consensus 201 ~~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~e~--~~~i~~P~~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~~iW~l~ 278 (369)
.++..+|.+|.....+ .+.++|..+.+ |+. +.+. ....+..+|++++... ...+..+-.+
T Consensus 236 ~p~~~~~~vy~~~~~g-------~l~a~d~~tG~~~W~~-~~~~--------~~~p~~~~~~vyv~~~--~G~l~~~d~~ 297 (377)
T TIGR03300 236 DPVVDGGQVYAVSYQG-------RVAALDLRSGRVLWKR-DASS--------YQGPAVDDNRLYVTDA--DGVVVALDRR 297 (377)
T ss_pred ccEEECCEEEEEEcCC-------EEEEEECCCCcEEEee-ccCC--------ccCceEeCCEEEEECC--CCeEEEEECC
Confidence 3467789999887665 89999998753 433 2111 1123445666666542 2233333332
Q ss_pred cCCCCCCeeEEEEEcccccccccccccceeeeeEEeeeccCCCCCCeEEEEECCCeEEEEECCCCeEEE
Q 036467 279 DFGARESWTRMFVIGRRALINFDNYAFVHLKPVCEMMNLSNGNGKNFLLIEKGDGELILYDFENEIATD 347 (369)
Q Consensus 279 ~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ydl~~~~~~~ 347 (369)
+ .+..|.... +... ....|... + +.|++...++.++.+|.++++...
T Consensus 298 t--G~~~W~~~~-~~~~----------~~ssp~i~------g---~~l~~~~~~G~l~~~d~~tG~~~~ 344 (377)
T TIGR03300 298 S--GSELWKNDE-LKYR----------QLTAPAVV------G---GYLVVGDFEGYLHWLSREDGSFVA 344 (377)
T ss_pred C--CcEEEcccc-ccCC----------ccccCEEE------C---CEEEEEeCCCEEEEEECCCCCEEE
Confidence 2 234465421 1110 11233333 2 677777667779999998887644
No 61
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=85.70 E-value=26 Score=32.36 Aligned_cols=139 Identities=9% Similarity=0.014 Sum_probs=79.1
Q ss_pred ceEEEEEcCCCceEEccCCCCeeeccCC-cEEECceEEEEeecCCCCCceeEEEEEECCCcc--eeeeCCC--CCcCCCC
Q 036467 174 CEARVYSLASDKWKKINGGIPYHISSRA-AVCFNECLIWKASRGLGRGMTVLVVAFDMNREE--FKEIHRP--EYKDSHD 248 (369)
Q Consensus 174 ~~~~vys~~t~~W~~~~~~~p~~~~~~~-~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~e~--~~~i~~P--~~~~~~~ 248 (369)
........++..|..-............ .++.+|++|.....+ .|.+||+++.+ |+.-..+ ...
T Consensus 35 ~~~~~~~~g~~~W~~~~~~~~~~~~~~~~~~~~dg~v~~~~~~G-------~i~A~d~~~g~~~W~~~~~~~~~~~---- 103 (370)
T COG1520 35 VAVANNTSGTLLWSVSLGSGGGGIYAGPAPADGDGTVYVGTRDG-------NIFALNPDTGLVKWSYPLLGAVAQL---- 103 (370)
T ss_pred eEEEcccCcceeeeeecccCccceEeccccEeeCCeEEEecCCC-------cEEEEeCCCCcEEecccCcCcceec----
Confidence 4444555566778532022221222223 599999999986555 89999999876 7655443 111
Q ss_pred CceeEEEEECCcEEEEEecCCCeEEEEEeccCCCCCCeeEEEEEcccccccccccccceeeeeEEeeeccCCCCCCeEEE
Q 036467 249 KCQIEVGVFRGEFAMFHMWREDRVEIWTMKDFGARESWTRMFVIGRRALINFDNYAFVHLKPVCEMMNLSNGNGKNFLLI 328 (369)
Q Consensus 249 ~~~~~l~~~~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 328 (369)
....+.. +|++++-.... .++.+++......|.....-. . ....+.-+ . + +.+++
T Consensus 104 -~~~~~~~-~G~i~~g~~~g----~~y~ld~~~G~~~W~~~~~~~---~--------~~~~~~v~----~-~---~~v~~ 158 (370)
T COG1520 104 -SGPILGS-DGKIYVGSWDG----KLYALDASTGTLVWSRNVGGS---P--------YYASPPVV----G-D---GTVYV 158 (370)
T ss_pred -cCceEEe-CCeEEEecccc----eEEEEECCCCcEEEEEecCCC---e--------EEecCcEE----c-C---cEEEE
Confidence 1222222 78866654422 678887743345677654331 1 01222222 2 3 56766
Q ss_pred EECCCeEEEEECCCCeEEEe
Q 036467 329 EKGDGELILYDFENEIATDF 348 (369)
Q Consensus 329 ~~~~~~~~~ydl~~~~~~~v 348 (369)
...++.++..|.++++.++.
T Consensus 159 ~s~~g~~~al~~~tG~~~W~ 178 (370)
T COG1520 159 GTDDGHLYALNADTGTLKWT 178 (370)
T ss_pred ecCCCeEEEEEccCCcEEEE
Confidence 65566799999998887555
No 62
>PF12458 DUF3686: ATPase involved in DNA repair ; InterPro: IPR020958 This entry represents an N-terminal domain associated with ATPases and some uncharacterised proteins; it is approximately 450 amino acids in length and contains two conserved sequence motifs: DVF and SPNGED.
Probab=84.28 E-value=15 Score=34.09 Aligned_cols=140 Identities=19% Similarity=0.198 Sum_probs=76.3
Q ss_pred ecccEEEeec---cCCceEEEEcCCccceeeCCCCCCCCCCCcccceEEEEEeeeCCCCCeEEEEEEeeeCCCcccCCCC
Q 036467 96 CNGLLCISDQ---SCNEDIFLFNPSTKKYKKLPVPEFDVPTIETTCFTSLGFGYHQADDDYKVIRSIYLYDKPFVDIDSY 172 (369)
Q Consensus 96 ~~GLl~~~~~---~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~ 172 (369)
.+.|+++... ...-+++|+|..|++..+|..+.......+......+.=||--.++.+|++-... .
T Consensus 237 vG~LILLrI~PY~E~~~RylVfN~~t~~V~R~Daig~acv~LPedqGiIFpgGYyLqtGe~K~Fd~~~-----------~ 305 (448)
T PF12458_consen 237 VGNLILLRIRPYREEEWRYLVFNTRTKKVVRLDAIGQACVRLPEDQGIIFPGGYYLQTGEYKTFDTDM-----------D 305 (448)
T ss_pred cCcEEEEEeccCCCcceeEEEEecccceEEEecchhhhhhcCCccCceEccCceEeccCCceeecccC-----------C
Confidence 3456666653 2223799999999999998766543222221133444445555567777655332 0
Q ss_pred cceEEEEEcCCCceEEccCCCCeeeccCCcEEECceEEEEeecCCCCCceeEEEEEECCCcceeeeCCCCCcCCCCCcee
Q 036467 173 ECEARVYSLASDKWKKINGGIPYHISSRAAVCFNECLIWKASRGLGRGMTVLVVAFDMNREEFKEIHRPEYKDSHDKCQI 252 (369)
Q Consensus 173 ~~~~~vys~~t~~W~~~~~~~p~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~~ 252 (369)
...+ =|.+ ..| + -..++|.......+ .+.++.||+-..+. ..|... .+.
T Consensus 306 ~l~F---------~r~v--rSP------N---GEDvLYvF~~~~~g---~~~Ll~YN~I~k~v---~tPi~c-----hG~ 354 (448)
T PF12458_consen 306 GLEF---------ERKV--RSP------N---GEDVLYVFYAREEG---RYLLLPYNLIRKEV---ATPIIC-----HGY 354 (448)
T ss_pred CceE---------EEEe--cCC------C---CceEEEEEEECCCC---cEEEEechhhhhhh---cCCeec-----cce
Confidence 0111 0111 111 1 12467887766544 35889998876543 334332 122
Q ss_pred EEEEECCcEEEEEec-CC----CeEEEEEec
Q 036467 253 EVGVFRGEFAMFHMW-RE----DRVEIWTMK 278 (369)
Q Consensus 253 ~l~~~~G~L~~~~~~-~~----~~~~iW~l~ 278 (369)
. .--+|+|+++... ++ .-++||..-
T Consensus 355 a-lf~DG~l~~fra~~~EptrvHp~QiWqTP 384 (448)
T PF12458_consen 355 A-LFEDGRLVYFRAEGDEPTRVHPMQIWQTP 384 (448)
T ss_pred e-EecCCEEEEEecCCCCcceeccceeecCC
Confidence 2 3346889888765 22 567888753
No 63
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=83.67 E-value=38 Score=31.58 Aligned_cols=190 Identities=12% Similarity=0.109 Sum_probs=97.9
Q ss_pred ecccEEEeeccCCceEEEEcCCccceeeCCCCCCCCCCCcccceEEEEEeeeCCCCCeEEEEEEeeeCCCcccCCCCcce
Q 036467 96 CNGLLCISDQSCNEDIFLFNPSTKKYKKLPVPEFDVPTIETTCFTSLGFGYHQADDDYKVIRSIYLYDKPFVDIDSYECE 175 (369)
Q Consensus 96 ~~GLl~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~ 175 (369)
.+|.|.+.. ..+.++..|+.|++.+.--..+... .....+ . ++ +|+. .. ....
T Consensus 119 ~~~~v~v~~--~~g~l~ald~~tG~~~W~~~~~~~~-------~ssP~v-~----~~-~v~v-~~-----------~~g~ 171 (394)
T PRK11138 119 AGGKVYIGS--EKGQVYALNAEDGEVAWQTKVAGEA-------LSRPVV-S----DG-LVLV-HT-----------SNGM 171 (394)
T ss_pred ECCEEEEEc--CCCEEEEEECCCCCCcccccCCCce-------ecCCEE-E----CC-EEEE-EC-----------CCCE
Confidence 456666655 5678899999998765422221110 000001 1 11 2222 11 1235
Q ss_pred EEEEEcCCC--ceEEccCCCCe-eec-cCCcEEECceEEEEeecCCCCCceeEEEEEECCCc--ceee-eCCCCCcCCC-
Q 036467 176 ARVYSLASD--KWKKINGGIPY-HIS-SRAAVCFNECLIWKASRGLGRGMTVLVVAFDMNRE--EFKE-IHRPEYKDSH- 247 (369)
Q Consensus 176 ~~vys~~t~--~W~~~~~~~p~-~~~-~~~~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~e--~~~~-i~~P~~~~~~- 247 (369)
+..++..++ .|+.- ...|. ... ...++..+|.+|+....+ .+.++|..+. .|+. +..|......
T Consensus 172 l~ald~~tG~~~W~~~-~~~~~~~~~~~~sP~v~~~~v~~~~~~g-------~v~a~d~~~G~~~W~~~~~~~~~~~~~~ 243 (394)
T PRK11138 172 LQALNESDGAVKWTVN-LDVPSLTLRGESAPATAFGGAIVGGDNG-------RVSAVLMEQGQLIWQQRISQPTGATEID 243 (394)
T ss_pred EEEEEccCCCEeeeec-CCCCcccccCCCCCEEECCEEEEEcCCC-------EEEEEEccCChhhheeccccCCCccchh
Confidence 677777765 68765 32221 111 234577788888866554 7899999875 4643 2233221100
Q ss_pred --CCceeEEEEECCcEEEEEecCCCeEEEEEeccCCCCCCeeEEEEEcccccccccccccceeeeeEEeeeccCCCCCCe
Q 036467 248 --DKCQIEVGVFRGEFAMFHMWREDRVEIWTMKDFGARESWTRMFVIGRRALINFDNYAFVHLKPVCEMMNLSNGNGKNF 325 (369)
Q Consensus 248 --~~~~~~l~~~~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (369)
......-+..+|.|++.... . .+..++-...+..|.... ... ..+... + +.
T Consensus 244 ~~~~~~~sP~v~~~~vy~~~~~--g--~l~ald~~tG~~~W~~~~----~~~----------~~~~~~------~---~~ 296 (394)
T PRK11138 244 RLVDVDTTPVVVGGVVYALAYN--G--NLVALDLRSGQIVWKREY----GSV----------NDFAVD------G---GR 296 (394)
T ss_pred cccccCCCcEEECCEEEEEEcC--C--eEEEEECCCCCEEEeecC----CCc----------cCcEEE------C---CE
Confidence 00112234457777776532 2 244444332345676531 110 112222 3 67
Q ss_pred EEEEECCCeEEEEECCCCeEEE
Q 036467 326 LLIEKGDGELILYDFENEIATD 347 (369)
Q Consensus 326 i~~~~~~~~~~~ydl~~~~~~~ 347 (369)
||+...++.++.+|.++++..+
T Consensus 297 vy~~~~~g~l~ald~~tG~~~W 318 (394)
T PRK11138 297 IYLVDQNDRVYALDTRGGVELW 318 (394)
T ss_pred EEEEcCCCeEEEEECCCCcEEE
Confidence 8887777789999998886433
No 64
>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A.
Probab=83.04 E-value=11 Score=33.85 Aligned_cols=81 Identities=16% Similarity=0.277 Sum_probs=46.7
Q ss_pred EEE-CceEEEEeecCCCCCc-eeEEEEEECC-Ccceeee-CCCCCcCCCCCceeEEEEE-CCcEEEEEecCCCeEEEEEe
Q 036467 203 VCF-NECLIWKASRGLGRGM-TVLVVAFDMN-REEFKEI-HRPEYKDSHDKCQIEVGVF-RGEFAMFHMWREDRVEIWTM 277 (369)
Q Consensus 203 v~~-~G~lyw~~~~~~~~~~-~~~il~fD~~-~e~~~~i-~~P~~~~~~~~~~~~l~~~-~G~L~~~~~~~~~~~~iW~l 277 (369)
|.. ||.|-+-..-...... ...++.|-.+ ..+|..- -+|+.. +..+.++|+ +|+|.|+..++...-+|..-
T Consensus 127 V~m~dGTLVFPv~a~~~~~~~~~SlIiYS~d~g~~W~lskg~s~~g----C~~psv~EWe~gkLlM~~~c~~g~rrVYeS 202 (310)
T PF13859_consen 127 VVMEDGTLVFPVQATKKNGDGTVSLIIYSTDDGKTWKLSKGMSPAG----CSDPSVVEWEDGKLLMMTACDDGRRRVYES 202 (310)
T ss_dssp EE-TTS-EEEEEEEEETT---EEEEEEEESSTTSS-EE-S----TT-----EEEEEEEE-TTEEEEEEE-TTS---EEEE
T ss_pred eEEcCCCEEEEEeeeccCccceEEEEEEECCCccceEeccccCCCC----cceEEEEeccCCeeEEEEecccceEEEEEE
Confidence 544 8888776643222223 4688888877 6788765 344332 368899999 79999999987765667666
Q ss_pred ccCCCCCCeeEE
Q 036467 278 KDFGARESWTRM 289 (369)
Q Consensus 278 ~~~~~~~~W~~~ 289 (369)
.| .+.+|+..
T Consensus 203 ~D--mG~tWtea 212 (310)
T PF13859_consen 203 GD--MGTTWTEA 212 (310)
T ss_dssp SS--TTSS-EE-
T ss_pred cc--cceehhhc
Confidence 65 66889973
No 65
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=82.53 E-value=23 Score=32.08 Aligned_cols=115 Identities=17% Similarity=0.179 Sum_probs=63.3
Q ss_pred CceEEEEeecCCCCCceeEEEEEECCCcceeee---CCCCCcCCCCCc---eeEEEEE---CCcEEEEEec------CCC
Q 036467 206 NECLIWKASRGLGRGMTVLVVAFDMNREEFKEI---HRPEYKDSHDKC---QIEVGVF---RGEFAMFHMW------RED 270 (369)
Q Consensus 206 ~G~lyw~~~~~~~~~~~~~il~fD~~~e~~~~i---~~P~~~~~~~~~---~~~l~~~---~G~L~~~~~~------~~~ 270 (369)
+|.+||+..++ .|...|+..+.-... ++-...+..... +..+..+ .|+||++... +..
T Consensus 195 ~~~~~F~Sy~G-------~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdp 267 (342)
T PF06433_consen 195 GGRLYFVSYEG-------NVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDP 267 (342)
T ss_dssp TTEEEEEBTTS-------EEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-
T ss_pred CCeEEEEecCC-------EEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCC
Confidence 36788988887 899999988754333 111111000111 1233333 4799887542 246
Q ss_pred eEEEEEeccCCCCCCeeEEEEEcccccccccccccceeeeeEEeeeccCCCCCCeEEE-EEC-CCeEEEEECCCCeEEE
Q 036467 271 RVEIWTMKDFGARESWTRMFVIGRRALINFDNYAFVHLKPVCEMMNLSNGNGKNFLLI-EKG-DGELILYDFENEIATD 347 (369)
Q Consensus 271 ~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~-~~~~~~ydl~~~~~~~ 347 (369)
.-+||+++-. +=.++.+|++... ...+.+ .++ ..-+++ ... +..+.+||..|++...
T Consensus 268 gteVWv~D~~----t~krv~Ri~l~~~----------~~Si~V----sqd--~~P~L~~~~~~~~~l~v~D~~tGk~~~ 326 (342)
T PF06433_consen 268 GTEVWVYDLK----THKRVARIPLEHP----------IDSIAV----SQD--DKPLLYALSAGDGTLDVYDAATGKLVR 326 (342)
T ss_dssp EEEEEEEETT----TTEEEEEEEEEEE----------ESEEEE----ESS--SS-EEEEEETTTTEEEEEETTT--EEE
T ss_pred ceEEEEEECC----CCeEEEEEeCCCc----------cceEEE----ccC--CCcEEEEEcCCCCeEEEEeCcCCcEEe
Confidence 7899999852 2346788876442 234555 544 132444 333 4569999999997533
No 66
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=81.67 E-value=12 Score=33.05 Aligned_cols=32 Identities=16% Similarity=0.230 Sum_probs=25.5
Q ss_pred CCeEEEEECCCeEEEEECCCCeEEEeEEecCC
Q 036467 323 KNFLLIEKGDGELILYDFENEIATDFKIQRAP 354 (369)
Q Consensus 323 ~~~i~~~~~~~~~~~ydl~~~~~~~v~~~~~~ 354 (369)
|.+++....++.+-.||+++++...|.....+
T Consensus 84 gskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~p 115 (347)
T KOG0647|consen 84 GSKVFSGGCDKQAKLWDLASGQVSQVAAHDAP 115 (347)
T ss_pred CceEEeeccCCceEEEEccCCCeeeeeecccc
Confidence 57777766677799999999999999875544
No 67
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=81.60 E-value=35 Score=33.35 Aligned_cols=122 Identities=13% Similarity=0.109 Sum_probs=65.7
Q ss_pred CCcEEECceEEEEeecCCCCCceeEEEEEECCC--cceeee-CCCCCcCC---CCCceeEEEEECCcEEEEEecCCCeEE
Q 036467 200 RAAVCFNECLIWKASRGLGRGMTVLVVAFDMNR--EEFKEI-HRPEYKDS---HDKCQIEVGVFRGEFAMFHMWREDRVE 273 (369)
Q Consensus 200 ~~~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~--e~~~~i-~~P~~~~~---~~~~~~~l~~~~G~L~~~~~~~~~~~~ 273 (369)
..++..+|.+|.....+ .|.++|..+ +.|+.- ..|..... .......++..+|++++.... . .
T Consensus 63 stPvv~~g~vyv~s~~g-------~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~d-g---~ 131 (527)
T TIGR03075 63 SQPLVVDGVMYVTTSYS-------RVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLD-A---R 131 (527)
T ss_pred cCCEEECCEEEEECCCC-------cEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCC-C---E
Confidence 34588899999976654 799999886 466543 33322210 000111245556777664431 1 3
Q ss_pred EEEeccCCCCCCeeEEEEEcccccccccccccceeeeeEEeeeccCCCCCCeEEEEEC------CCeEEEEECCCCeEEE
Q 036467 274 IWTMKDFGARESWTRMFVIGRRALINFDNYAFVHLKPVCEMMNLSNGNGKNFLLIEKG------DGELILYDFENEIATD 347 (369)
Q Consensus 274 iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~------~~~~~~ydl~~~~~~~ 347 (369)
+..|+....+..|..... +... .......|+.. + +.|++... .+.+..||.+|++..+
T Consensus 132 l~ALDa~TGk~~W~~~~~-~~~~------~~~~tssP~v~------~---g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW 195 (527)
T TIGR03075 132 LVALDAKTGKVVWSKKNG-DYKA------GYTITAAPLVV------K---GKVITGISGGEFGVRGYVTAYDAKTGKLVW 195 (527)
T ss_pred EEEEECCCCCEEeecccc-cccc------cccccCCcEEE------C---CEEEEeecccccCCCcEEEEEECCCCceeE
Confidence 566664434456765321 1100 00111344444 3 56666432 3469999999998655
Q ss_pred e
Q 036467 348 F 348 (369)
Q Consensus 348 v 348 (369)
-
T Consensus 196 ~ 196 (527)
T TIGR03075 196 R 196 (527)
T ss_pred e
Confidence 4
No 68
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=80.52 E-value=51 Score=33.87 Aligned_cols=32 Identities=19% Similarity=0.210 Sum_probs=24.7
Q ss_pred CCcEEECceEEEEeecCCCCCceeEEEEEECCC--cceeee
Q 036467 200 RAAVCFNECLIWKASRGLGRGMTVLVVAFDMNR--EEFKEI 238 (369)
Q Consensus 200 ~~~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~--e~~~~i 238 (369)
..++.++|++|.....+ .|+++|.++ +.|+.-
T Consensus 188 ~TPlvvgg~lYv~t~~~-------~V~ALDa~TGk~lW~~d 221 (764)
T TIGR03074 188 ATPLKVGDTLYLCTPHN-------KVIALDAATGKEKWKFD 221 (764)
T ss_pred cCCEEECCEEEEECCCC-------eEEEEECCCCcEEEEEc
Confidence 34589999999987655 899999886 466653
No 69
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=79.84 E-value=47 Score=30.07 Aligned_cols=125 Identities=14% Similarity=0.139 Sum_probs=73.2
Q ss_pred eEEEEeecCCCCCceeEEEEEECC--Ccceeee-CCCCCcCCCCCceeEEEEEC-CcEEEEEecCCCeEEEEEeccCCCC
Q 036467 208 CLIWKASRGLGRGMTVLVVAFDMN--REEFKEI-HRPEYKDSHDKCQIEVGVFR-GEFAMFHMWREDRVEIWTMKDFGAR 283 (369)
Q Consensus 208 ~lyw~~~~~~~~~~~~~il~fD~~--~e~~~~i-~~P~~~~~~~~~~~~l~~~~-G~L~~~~~~~~~~~~iW~l~~~~~~ 283 (369)
.+|-....++. ..|.+|.++ +++.+.+ ..+.... ....+...+ |++.++..+....+.+.-+++.|
T Consensus 53 ~LY~v~~~~~~----ggvaay~iD~~~G~Lt~ln~~~~~g~----~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG-- 122 (346)
T COG2706 53 HLYVVNEPGEE----GGVAAYRIDPDDGRLTFLNRQTLPGS----PPCYVSVDEDGRFVFVANYHSGSVSVYPLQADG-- 122 (346)
T ss_pred EEEEEEecCCc----CcEEEEEEcCCCCeEEEeeccccCCC----CCeEEEECCCCCEEEEEEccCceEEEEEcccCC--
Confidence 58888776432 366666665 4788888 3343331 114555554 77777666667799999998754
Q ss_pred CCeeEEEEEcccccccccccccceeeeeEEeeeccCCCCCCeEEEEEC--CCeEEEEECCCCeEEEeE
Q 036467 284 ESWTRMFVIGRRALINFDNYAFVHLKPVCEMMNLSNGNGKNFLLIEKG--DGELILYDFENEIATDFK 349 (369)
Q Consensus 284 ~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~ydl~~~~~~~v~ 349 (369)
.-|..+..+....--.-.+....+.....+ ..+ ++.++..+ ..+++.|+++.++++...
T Consensus 123 ~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~----tP~---~~~l~v~DLG~Dri~~y~~~dg~L~~~~ 183 (346)
T COG2706 123 SLQPVVQVVKHTGSGPHERQESPHVHSANF----TPD---GRYLVVPDLGTDRIFLYDLDDGKLTPAD 183 (346)
T ss_pred ccccceeeeecCCCCCCccccCCccceeee----CCC---CCEEEEeecCCceEEEEEcccCcccccc
Confidence 446665544432210001111112344455 666 65656543 457999999999887764
No 70
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=79.69 E-value=0.48 Score=43.48 Aligned_cols=36 Identities=25% Similarity=0.376 Sum_probs=33.2
Q ss_pred CCcHHHHHHHhccCCccccceeeecccchhcccCCh
Q 036467 1 NLPTDIITDIFTRLPVKSLIRFKCVSKSMYALVHNK 36 (369)
Q Consensus 1 ~LP~Dll~eIL~rLp~~~l~r~r~VcK~W~~li~~~ 36 (369)
.||.+++..||+-|..++++|++.+|+.|+-+..+.
T Consensus 74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~ 109 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDG 109 (483)
T ss_pred cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcc
Confidence 489999999999999999999999999999987554
No 71
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=79.63 E-value=39 Score=29.06 Aligned_cols=140 Identities=10% Similarity=0.184 Sum_probs=81.0
Q ss_pred CceEEccCCCCeeeccCCcEEECceEEEEeecCCCCCceeEEEEEECCCcce-eeeCCCCCcCCC-------CCceeEEE
Q 036467 184 DKWKKINGGIPYHISSRAAVCFNECLIWKASRGLGRGMTVLVVAFDMNREEF-KEIHRPEYKDSH-------DKCQIEVG 255 (369)
Q Consensus 184 ~~W~~~~~~~p~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~e~~-~~i~~P~~~~~~-------~~~~~~l~ 255 (369)
+.|... -.+|.......-|..+|.+|+..... ..|+.||+.++.- ....+|...... ....+.++
T Consensus 56 ~~~~~~-~~lp~~~~gTg~VVynGs~yynk~~t------~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~a 128 (249)
T KOG3545|consen 56 GRKAEK-YRLPYSWDGTGHVVYNGSLYYNKAGT------RNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLA 128 (249)
T ss_pred cCcceE-EeCCCCccccceEEEcceEEeeccCC------cceEEEEeecceeeeeeeccccccCCCcccccCCCccccce
Confidence 456555 45676666666699999999998655 3899999999533 333556543211 12346788
Q ss_pred EECCcEEEEEecC--CCeEEEEEeccC--CCCCCeeEEEEEcccccccccccccceeeeeEEeeeccCCCCCCeEEEEEC
Q 036467 256 VFRGEFAMFHMWR--EDRVEIWTMKDF--GARESWTRMFVIGRRALINFDNYAFVHLKPVCEMMNLSNGNGKNFLLIEKG 331 (369)
Q Consensus 256 ~~~G~L~~~~~~~--~~~~~iW~l~~~--~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 331 (369)
+.+..|.++.... ...+.|-.|+.. .....|.-.. +... ....+.+ + |.++.+..
T Consensus 129 vDE~GLWviYat~~~~g~iv~skLdp~tl~~e~tW~T~~--~k~~----------~~~aF~i------C---GvLY~v~S 187 (249)
T KOG3545|consen 129 VDENGLWVIYATPENAGTIVLSKLDPETLEVERTWNTTL--PKRS----------AGNAFMI------C---GVLYVVHS 187 (249)
T ss_pred ecccceeEEecccccCCcEEeeccCHHHhheeeeecccc--CCCC----------cCceEEE------e---eeeEEEec
Confidence 8887787776543 245555666642 1223342111 1111 1112222 3 56666542
Q ss_pred ----CCeE-EEEECCCCeEEEeEEe
Q 036467 332 ----DGEL-ILYDFENEIATDFKIQ 351 (369)
Q Consensus 332 ----~~~~-~~ydl~~~~~~~v~~~ 351 (369)
+..+ ++||..+++-+.+.++
T Consensus 188 ~~~~~~~i~yaydt~~~~~~~~~ip 212 (249)
T KOG3545|consen 188 YNCTHTQISYAYDTTTGTQERIDLP 212 (249)
T ss_pred cccCCceEEEEEEcCCCceeccccc
Confidence 2223 7999999998888754
No 72
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=79.20 E-value=4.7 Score=24.78 Aligned_cols=23 Identities=13% Similarity=0.472 Sum_probs=18.6
Q ss_pred CCCcceEEEEEcCCCceEEccCCC
Q 036467 170 DSYECEARVYSLASDKWKKINGGI 193 (369)
Q Consensus 170 ~~~~~~~~vys~~t~~W~~~~~~~ 193 (369)
......+++|+.++++|+.+ ..+
T Consensus 26 ~~~~~~v~~~d~~t~~W~~~-~~~ 48 (49)
T PF07646_consen 26 GSSSNDVWVFDTETNQWTEL-SPM 48 (49)
T ss_pred CcccceeEEEECCCCEEeec-CCC
Confidence 34567899999999999988 544
No 73
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=79.11 E-value=2.7 Score=25.77 Aligned_cols=22 Identities=9% Similarity=0.549 Sum_probs=14.3
Q ss_pred CcceEEEEEcCCCceEEccCCCC
Q 036467 172 YECEARVYSLASDKWKKINGGIP 194 (369)
Q Consensus 172 ~~~~~~vys~~t~~W~~~~~~~p 194 (369)
....+++|+..+++|+.+ +.+|
T Consensus 27 ~~~d~~~~d~~~~~W~~~-~~~P 48 (49)
T PF13418_consen 27 PLNDLWIFDIETNTWTRL-PSMP 48 (49)
T ss_dssp E---EEEEETTTTEEEE---SS-
T ss_pred ccCCEEEEECCCCEEEEC-CCCC
Confidence 456789999999999999 6665
No 74
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=79.07 E-value=24 Score=33.61 Aligned_cols=172 Identities=14% Similarity=0.208 Sum_probs=89.3
Q ss_pred CCcceEEEEEcCCCceEEc--cCCCCeeeccCCcEEECceEEEEeecCC-CCCceeEEEEEECCCc--ceeeeC--CCCC
Q 036467 171 SYECEARVYSLASDKWKKI--NGGIPYHISSRAAVCFNECLIWKASRGL-GRGMTVLVVAFDMNRE--EFKEIH--RPEY 243 (369)
Q Consensus 171 ~~~~~~~vys~~t~~W~~~--~~~~p~~~~~~~~v~~~G~lyw~~~~~~-~~~~~~~il~fD~~~e--~~~~i~--~P~~ 243 (369)
+-..+.+||+-.++.|-.- ..+.|.......-|+.+-.||.+++.-+ +. +.=--|.+... +|..++ .|..
T Consensus 54 GiiDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtrilvFGGMvEYGk---YsNdLYELQasRWeWkrlkp~~p~n 130 (830)
T KOG4152|consen 54 GIIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRILVFGGMVEYGK---YSNDLYELQASRWEWKRLKPKTPKN 130 (830)
T ss_pred cchhhhhhhccccceeecchhcCCCCCchhhcceEecCceEEEEccEeeecc---ccchHHHhhhhhhhHhhcCCCCCCC
Confidence 3457889999999999543 2445544333333555556777764321 11 11112333333 556662 2221
Q ss_pred cC-CCCCceeEEEEECCcEEEEEecCC------C-----eEEEEEeccC-C-CCCCeeEEEEEcccccccccccccceee
Q 036467 244 KD-SHDKCQIEVGVFRGEFAMFHMWRE------D-----RVEIWTMKDF-G-ARESWTRMFVIGRRALINFDNYAFVHLK 309 (369)
Q Consensus 244 ~~-~~~~~~~~l~~~~G~L~~~~~~~~------~-----~~~iW~l~~~-~-~~~~W~~~~~i~~~~~~~~~~~~~~~~~ 309 (369)
.. .+.........++.+-|++..... + --++++|+=. | .-..|+..-+-..-+.+ ...+..
T Consensus 131 G~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~p-----RESHTA 205 (830)
T KOG4152|consen 131 GPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPP-----RESHTA 205 (830)
T ss_pred CCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCC-----ccccee
Confidence 11 111233455667788888876421 0 1134444421 2 22457765443332221 122333
Q ss_pred eeEEeeeccCCCCCCeEEEEEC-C----CeEEEEECCCCeEEEeEEecCC
Q 036467 310 PVCEMMNLSNGNGKNFLLIEKG-D----GELILYDFENEIATDFKIQRAP 354 (369)
Q Consensus 310 ~~~~~~~~~~~~~~~~i~~~~~-~----~~~~~ydl~~~~~~~v~~~~~~ 354 (369)
+++. -++++..++++..+ . +.+...|++|-.|.+..+.|..
T Consensus 206 ViY~----eKDs~~skmvvyGGM~G~RLgDLW~Ldl~Tl~W~kp~~~G~~ 251 (830)
T KOG4152|consen 206 VIYT----EKDSKKSKMVVYGGMSGCRLGDLWTLDLDTLTWNKPSLSGVA 251 (830)
T ss_pred EEEE----eccCCcceEEEEcccccccccceeEEecceeecccccccCCC
Confidence 4443 44444566666542 1 2399999999999999887653
No 75
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=78.13 E-value=61 Score=30.39 Aligned_cols=121 Identities=13% Similarity=0.021 Sum_probs=63.6
Q ss_pred EECceEEEEeecCCCCCceeEEEEEECCCcc---eeeeCCCCCcCCCCCceeEEEEECCcEEEEEecCCCeEEEEEeccC
Q 036467 204 CFNECLIWKASRGLGRGMTVLVVAFDMNREE---FKEIHRPEYKDSHDKCQIEVGVFRGEFAMFHMWREDRVEIWTMKDF 280 (369)
Q Consensus 204 ~~~G~lyw~~~~~~~~~~~~~il~fD~~~e~---~~~i~~P~~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~~iW~l~~~ 280 (369)
..++.+|+++..+.. ...|++.|+.+-. |..+-+|... ...--.+...++.|.+....+. .-.|.+++-.
T Consensus 285 ~~~~~~yi~Tn~~a~---~~~l~~~~l~~~~~~~~~~~l~~~~~---~~~l~~~~~~~~~Lvl~~~~~~-~~~l~v~~~~ 357 (414)
T PF02897_consen 285 HHGDRLYILTNDDAP---NGRLVAVDLADPSPAEWWTVLIPEDE---DVSLEDVSLFKDYLVLSYRENG-SSRLRVYDLD 357 (414)
T ss_dssp EETTEEEEEE-TT-T---T-EEEEEETTSTSGGGEEEEEE--SS---SEEEEEEEEETTEEEEEEEETT-EEEEEEEETT
T ss_pred ccCCEEEEeeCCCCC---CcEEEEecccccccccceeEEcCCCC---ceeEEEEEEECCEEEEEEEECC-ccEEEEEECC
Confidence 457788887765432 2589999999765 6643333221 0122345556788877766543 4455555431
Q ss_pred CCCCCeeEEEEEcccccccccccccceeeeeEEeeeccCCCCCCeEEEEECC----CeEEEEECCCCeEEEeE
Q 036467 281 GARESWTRMFVIGRRALINFDNYAFVHLKPVCEMMNLSNGNGKNFLLIEKGD----GELILYDFENEIATDFK 349 (369)
Q Consensus 281 ~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~ydl~~~~~~~v~ 349 (369)
..|.... +++... ....++ ..+.+++.++|...+ ..++.||+++++.+.+.
T Consensus 358 ---~~~~~~~-~~~p~~----------g~v~~~----~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 358 ---DGKESRE-IPLPEA----------GSVSGV----SGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLLK 412 (414)
T ss_dssp ----TEEEEE-EESSSS----------SEEEEE----ES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEEE
T ss_pred ---CCcEEee-ecCCcc----------eEEecc----CCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEEE
Confidence 1244433 332222 111222 111124777776533 24999999999998875
No 76
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=77.95 E-value=5.3 Score=23.06 Aligned_cols=26 Identities=15% Similarity=-0.014 Sum_probs=20.3
Q ss_pred CeEEEEECCCeEEEEECCCCeEEEeE
Q 036467 324 NFLLIEKGDGELILYDFENEIATDFK 349 (369)
Q Consensus 324 ~~i~~~~~~~~~~~ydl~~~~~~~v~ 349 (369)
|.|++...++.++.+|.+|++..+-.
T Consensus 1 ~~v~~~~~~g~l~AlD~~TG~~~W~~ 26 (38)
T PF01011_consen 1 GRVYVGTPDGYLYALDAKTGKVLWKF 26 (38)
T ss_dssp TEEEEETTTSEEEEEETTTTSEEEEE
T ss_pred CEEEEeCCCCEEEEEECCCCCEEEee
Confidence 35677766778999999999977653
No 77
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=77.80 E-value=3.2 Score=25.52 Aligned_cols=29 Identities=24% Similarity=0.547 Sum_probs=22.4
Q ss_pred CCcceEEEEEcCCCceEEccCCCCeeeccC
Q 036467 171 SYECEARVYSLASDKWKKINGGIPYHISSR 200 (369)
Q Consensus 171 ~~~~~~~vys~~t~~W~~~~~~~p~~~~~~ 200 (369)
.....+.+|++.+++|+.+ ..+|.....+
T Consensus 16 ~~~nd~~~~~~~~~~W~~~-~~~P~~R~~h 44 (49)
T PF13415_consen 16 TRLNDVWVFDLDTNTWTRI-GDLPPPRSGH 44 (49)
T ss_pred CEecCEEEEECCCCEEEEC-CCCCCCccce
Confidence 4456789999999999999 7777655443
No 78
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=77.56 E-value=6.3 Score=21.56 Aligned_cols=24 Identities=17% Similarity=0.112 Sum_probs=19.5
Q ss_pred CeEEEEECCCeEEEEECCCCeEEE
Q 036467 324 NFLLIEKGDGELILYDFENEIATD 347 (369)
Q Consensus 324 ~~i~~~~~~~~~~~ydl~~~~~~~ 347 (369)
+.+++...++.++++|.++++..+
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~W 30 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEILW 30 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEEE
Confidence 577777777789999999988765
No 79
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=77.14 E-value=12 Score=27.86 Aligned_cols=45 Identities=13% Similarity=0.277 Sum_probs=31.5
Q ss_pred CceEEEEcCCccceeeCCCCCCCCCCCcccceEEEEEeeeCCCCCeEEEEEEe
Q 036467 108 NEDIFLFNPSTKKYKKLPVPEFDVPTIETTCFTSLGFGYHQADDDYKVIRSIY 160 (369)
Q Consensus 108 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~ 160 (369)
...++++||.|+.|..+-..+. ....+.+-+++..+.|.|+....
T Consensus 8 rA~Vm~~d~~tk~W~P~~~~~~--------~ls~V~~~~~~~~~~yrIvg~~~ 52 (111)
T cd01207 8 RASVMVYDDSNKKWVPAGGGSQ--------GFSRVQIYHHPRNNTFRVVGRKL 52 (111)
T ss_pred EEEeeEEcCCCCcEEcCCCCCC--------CcceEEEEEcCCCCEEEEEEeec
Confidence 3578999999998664422111 23456777788889999998654
No 80
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=76.92 E-value=55 Score=29.25 Aligned_cols=75 Identities=12% Similarity=0.192 Sum_probs=45.8
Q ss_pred EEECceEEEEeecCCCCCceeEEEEEECCCcce-eeeCCCCCcCCCCCceeEEEEECCcE---EEEEecCCCeEEEEEec
Q 036467 203 VCFNECLIWKASRGLGRGMTVLVVAFDMNREEF-KEIHRPEYKDSHDKCQIEVGVFRGEF---AMFHMWREDRVEIWTMK 278 (369)
Q Consensus 203 v~~~G~lyw~~~~~~~~~~~~~il~fD~~~e~~-~~i~~P~~~~~~~~~~~~l~~~~G~L---~~~~~~~~~~~~iW~l~ 278 (369)
|.++|..-.-++.+ ..|..||+.+..= ..+-.+.+ .+.-....+.+ .++...+...+.||..+
T Consensus 49 vAVs~~~~aSGssD------etI~IYDm~k~~qlg~ll~Hag-------sitaL~F~~~~S~shLlS~sdDG~i~iw~~~ 115 (362)
T KOG0294|consen 49 LAVSGPYVASGSSD------ETIHIYDMRKRKQLGILLSHAG-------SITALKFYPPLSKSHLLSGSDDGHIIIWRVG 115 (362)
T ss_pred EEecceeEeccCCC------CcEEEEeccchhhhcceecccc-------ceEEEEecCCcchhheeeecCCCcEEEEEcC
Confidence 77777654444444 3899999987533 33333322 22223333333 56667677899999876
Q ss_pred cCCCCCCeeEEEEEcccc
Q 036467 279 DFGARESWTRMFVIGRRA 296 (369)
Q Consensus 279 ~~~~~~~W~~~~~i~~~~ 296 (369)
+|+.+.++....
T Consensus 116 ------~W~~~~slK~H~ 127 (362)
T KOG0294|consen 116 ------SWELLKSLKAHK 127 (362)
T ss_pred ------CeEEeeeecccc
Confidence 398888876533
No 81
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=74.39 E-value=81 Score=29.96 Aligned_cols=127 Identities=11% Similarity=0.082 Sum_probs=70.1
Q ss_pred cccCChhhHHHHHhhccCCCCCEEEeeccceeeecccccccccccccc--ccccccCCC---------CceEEEeeeccc
Q 036467 31 ALVHNKIFIKKHVNRAIHQSDPKLILKNEFKLFGVEIINDKKLIRARK--LQVPFALSL---------EKVEISGSCNGL 99 (369)
Q Consensus 31 ~li~~~~F~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~~~~---------~~~~~~~s~~GL 99 (369)
++=++..|..-|.++..+. .-+++|......|.++ +...+..+ +.+|+.... ....-.+-.+|=
T Consensus 259 DlrrHTnFtdYY~R~~nsD-GkrIvFq~~GdIylyd----P~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd 333 (668)
T COG4946 259 DLRRHTNFTDYYPRNANSD-GKRIVFQNAGDIYLYD----PETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGD 333 (668)
T ss_pred hhhhcCCchhccccccCCC-CcEEEEecCCcEEEeC----CCcCcceeeecCCccccccccccccCHHHhhhhhccCCCc
Confidence 3445667877776666554 6788887766666666 11222222 223332110 011123334443
Q ss_pred -EEEeeccCCceEEEEcCCccceeeCCCCCCCCCCCcccceEEEEEeeeCCCCCeEEEEEEeeeCCCcccCCCCcceEEE
Q 036467 100 -LCISDQSCNEDIFLFNPSTKKYKKLPVPEFDVPTIETTCFTSLGFGYHQADDDYKVIRSIYLYDKPFVDIDSYECEARV 178 (369)
Q Consensus 100 -l~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~v 178 (369)
+.+. ..++.++.||.-+-.++++.... .....++.|+. +++. .. .....+.|
T Consensus 334 ~ia~V---SRGkaFi~~~~~~~~iqv~~~~~---------VrY~r~~~~~e----~~vi-gt----------~dgD~l~i 386 (668)
T COG4946 334 YIALV---SRGKAFIMRPWDGYSIQVGKKGG---------VRYRRIQVDPE----GDVI-GT----------NDGDKLGI 386 (668)
T ss_pred EEEEE---ecCcEEEECCCCCeeEEcCCCCc---------eEEEEEccCCc----ceEE-ec----------cCCceEEE
Confidence 3333 35789999999999998887642 12223443432 2222 11 23567899
Q ss_pred EEcCCCceEEc
Q 036467 179 YSLASDKWKKI 189 (369)
Q Consensus 179 ys~~t~~W~~~ 189 (369)
|+.+++.=+.+
T Consensus 387 yd~~~~e~kr~ 397 (668)
T COG4946 387 YDKDGGEVKRI 397 (668)
T ss_pred EecCCceEEEe
Confidence 99999887776
No 82
>PTZ00334 trans-sialidase; Provisional
Probab=74.25 E-value=28 Score=35.38 Aligned_cols=81 Identities=15% Similarity=0.213 Sum_probs=54.2
Q ss_pred EEECceEEEEeecCCCCCceeEEEEEECCCcceeee-CCCCCcCCCCCceeEEEEEC-CcEEEEEecCCCeEEEEEeccC
Q 036467 203 VCFNECLIWKASRGLGRGMTVLVVAFDMNREEFKEI-HRPEYKDSHDKCQIEVGVFR-GEFAMFHMWREDRVEIWTMKDF 280 (369)
Q Consensus 203 v~~~G~lyw~~~~~~~~~~~~~il~fD~~~e~~~~i-~~P~~~~~~~~~~~~l~~~~-G~L~~~~~~~~~~~~iW~l~~~ 280 (369)
+.-||.+-+-..-.........++.|-.++..|..- -+|+.. +..+.++|++ |+|.|+..++...-+|.+-.|
T Consensus 267 ~medGTLVFPv~a~~~~g~~vslIiYS~d~g~W~ls~g~s~~g----C~~P~I~EWe~gkLlM~t~C~dG~RrVYES~D- 341 (780)
T PTZ00334 267 QMKDGTLVFPVEGTKKDGKAVSLIIYSSATESGNLSKGMSADG----CSDPSVVEWKEGKLMMMTACDDGRRRVYESGD- 341 (780)
T ss_pred EecCCeEEEEEEEEcCCCCEEEEEEEecCCCCeEEcCCCCCCC----CCCCEEEEEcCCeEEEEEEeCCCCEEEEEECC-
Confidence 455788777654322223456788887777788654 234332 3578899996 999999988765556776665
Q ss_pred CCCCCeeEE
Q 036467 281 GARESWTRM 289 (369)
Q Consensus 281 ~~~~~W~~~ 289 (369)
.+.+|+..
T Consensus 342 -mG~tWtEA 349 (780)
T PTZ00334 342 -KGDSWTEA 349 (780)
T ss_pred -CCCChhhC
Confidence 56789863
No 83
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=74.19 E-value=73 Score=29.37 Aligned_cols=138 Identities=16% Similarity=0.207 Sum_probs=69.3
Q ss_pred ceEEEEEcCCC--ceEEccCCCCeeec-cCCcEEECceEEEEeecCCCCCceeEEEEEECCCc--ceee-eCCCCCcCCC
Q 036467 174 CEARVYSLASD--KWKKINGGIPYHIS-SRAAVCFNECLIWKASRGLGRGMTVLVVAFDMNRE--EFKE-IHRPEYKDSH 247 (369)
Q Consensus 174 ~~~~vys~~t~--~W~~~~~~~p~~~~-~~~~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~e--~~~~-i~~P~~~~~~ 247 (369)
..+..++..++ .|+.-....+.... ...++..+|.+|.-...+ .+.++|+.++ .|+. +..|......
T Consensus 155 g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g-------~v~ald~~tG~~~W~~~~~~~~g~~~~ 227 (377)
T TIGR03300 155 GRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGG-------KLVALDLQTGQPLWEQRVALPKGRTEL 227 (377)
T ss_pred CeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECCCC-------EEEEEEccCCCEeeeeccccCCCCCch
Confidence 34667777665 68755122222221 233477788777654433 8999999875 4543 2223211000
Q ss_pred ---CCceeEEEEECCcEEEEEecCCCeEEEEEeccCCCCCCeeEEEEEcccccccccccccceeeeeEEeeeccCCCCCC
Q 036467 248 ---DKCQIEVGVFRGEFAMFHMWREDRVEIWTMKDFGARESWTRMFVIGRRALINFDNYAFVHLKPVCEMMNLSNGNGKN 324 (369)
Q Consensus 248 ---~~~~~~l~~~~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (369)
..........+|.+++... ...+..+.++. .+..|.... .. ...|. + . + +
T Consensus 228 ~~~~~~~~~p~~~~~~vy~~~~--~g~l~a~d~~t--G~~~W~~~~----~~----------~~~p~-~----~-~---~ 280 (377)
T TIGR03300 228 ERLVDVDGDPVVDGGQVYAVSY--QGRVAALDLRS--GRVLWKRDA----SS----------YQGPA-V----D-D---N 280 (377)
T ss_pred hhhhccCCccEEECCEEEEEEc--CCEEEEEECCC--CcEEEeecc----CC----------ccCce-E----e-C---C
Confidence 0011122344666666543 23444444432 334576531 01 01222 2 2 2 5
Q ss_pred eEEEEECCCeEEEEECCCCeE
Q 036467 325 FLLIEKGDGELILYDFENEIA 345 (369)
Q Consensus 325 ~i~~~~~~~~~~~ydl~~~~~ 345 (369)
.|++...++.++.+|.++++.
T Consensus 281 ~vyv~~~~G~l~~~d~~tG~~ 301 (377)
T TIGR03300 281 RLYVTDADGVVVALDRRSGSE 301 (377)
T ss_pred EEEEECCCCeEEEEECCCCcE
Confidence 777766666788888887764
No 84
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.09 E-value=20 Score=32.47 Aligned_cols=46 Identities=17% Similarity=0.442 Sum_probs=37.3
Q ss_pred CcceEEEEEcCCCceEEccCCCCeeeccCCcEEECceEEEEeecCCC
Q 036467 172 YECEARVYSLASDKWKKINGGIPYHISSRAAVCFNECLIWKASRGLG 218 (369)
Q Consensus 172 ~~~~~~vys~~t~~W~~~~~~~p~~~~~~~~v~~~G~lyw~~~~~~~ 218 (369)
....-+||-+..++|+.+ ..+|..+...-++..++.+|.++++..+
T Consensus 316 K~w~~~Vy~~d~g~Wk~~-GeLp~~l~YG~s~~~nn~vl~IGGE~~~ 361 (381)
T COG3055 316 KSWNSEVYIFDNGSWKIV-GELPQGLAYGVSLSYNNKVLLIGGETSG 361 (381)
T ss_pred hhhhceEEEEcCCceeee-cccCCCccceEEEecCCcEEEEccccCC
Confidence 344567787889999999 8999977777778999999999987654
No 85
>PF13854 Kelch_5: Kelch motif
Probab=71.57 E-value=11 Score=22.24 Aligned_cols=39 Identities=10% Similarity=0.048 Sum_probs=26.4
Q ss_pred CeeeccCCcEEECceEEEEeecCC-CCCceeEEEEEECCC
Q 036467 194 PYHISSRAAVCFNECLIWKASRGL-GRGMTVLVVAFDMNR 232 (369)
Q Consensus 194 p~~~~~~~~v~~~G~lyw~~~~~~-~~~~~~~il~fD~~~ 232 (369)
|..+..+..+.+++.+|..++... .......+..||+.+
T Consensus 2 P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 2 PSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence 344455666889999999998763 333345677777765
No 86
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=70.31 E-value=95 Score=29.06 Aligned_cols=107 Identities=21% Similarity=0.383 Sum_probs=65.9
Q ss_pred CcceEEEEEcCCCceEEccCCCCeeeccCCcEEECceEEEEeecCCCCCceeEEEEEECCC-cceeeeCCCCCcCCCCCc
Q 036467 172 YECEARVYSLASDKWKKINGGIPYHISSRAAVCFNECLIWKASRGLGRGMTVLVVAFDMNR-EEFKEIHRPEYKDSHDKC 250 (369)
Q Consensus 172 ~~~~~~vys~~t~~W~~~~~~~p~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~-e~~~~i~~P~~~~~~~~~ 250 (369)
....+.||++.+.. .+ ..+|-....-..+.+...=||++...+. ..|..+|+.. +.|..+++|...
T Consensus 367 ~d~~vkiwdlks~~--~~-a~Fpght~~vk~i~FsENGY~Lat~add----~~V~lwDLRKl~n~kt~~l~~~~------ 433 (506)
T KOG0289|consen 367 PDGVVKIWDLKSQT--NV-AKFPGHTGPVKAISFSENGYWLATAADD----GSVKLWDLRKLKNFKTIQLDEKK------ 433 (506)
T ss_pred CCceEEEEEcCCcc--cc-ccCCCCCCceeEEEeccCceEEEEEecC----CeEEEEEehhhcccceeeccccc------
Confidence 44566777776655 33 3444432223347777777999876533 2699999986 566777777653
Q ss_pred eeEEEEEC--CcEEEEEecCCCeEEEEEeccCCCCCCeeEEEEEcccc
Q 036467 251 QIEVGVFR--GEFAMFHMWREDRVEIWTMKDFGARESWTRMFVIGRRA 296 (369)
Q Consensus 251 ~~~l~~~~--G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~ 296 (369)
...-..++ |....+. ...+.|...+. ..++|.++.......
T Consensus 434 ~v~s~~fD~SGt~L~~~---g~~l~Vy~~~k--~~k~W~~~~~~~~~s 476 (506)
T KOG0289|consen 434 EVNSLSFDQSGTYLGIA---GSDLQVYICKK--KTKSWTEIKELADHS 476 (506)
T ss_pred cceeEEEcCCCCeEEee---cceeEEEEEec--ccccceeeehhhhcc
Confidence 11222333 5555554 34677777765 557899988776544
No 87
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=70.13 E-value=8.3 Score=22.43 Aligned_cols=25 Identities=12% Similarity=0.094 Sum_probs=18.5
Q ss_pred CcEEECceEEEEeecCCCCCceeEEEEEECCC
Q 036467 201 AAVCFNECLIWKASRGLGRGMTVLVVAFDMNR 232 (369)
Q Consensus 201 ~~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~ 232 (369)
.++..+|.+|....++ .+.+||.++
T Consensus 16 ~~~v~~g~vyv~~~dg-------~l~ald~~t 40 (40)
T PF13570_consen 16 SPAVAGGRVYVGTGDG-------NLYALDAAT 40 (40)
T ss_dssp --EECTSEEEEE-TTS-------EEEEEETT-
T ss_pred CCEEECCEEEEEcCCC-------EEEEEeCCC
Confidence 3488899999998876 899999875
No 88
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=69.35 E-value=78 Score=27.70 Aligned_cols=142 Identities=10% Similarity=0.007 Sum_probs=78.0
Q ss_pred CcceEEEEEcCCCceEEccCCCCeeeccCCcEEECceEEEEeecCCCCCceeEEEEEECCCc-ceeeeCCCCCcCCCCCc
Q 036467 172 YECEARVYSLASDKWKKINGGIPYHISSRAAVCFNECLIWKASRGLGRGMTVLVVAFDMNRE-EFKEIHRPEYKDSHDKC 250 (369)
Q Consensus 172 ~~~~~~vys~~t~~W~~~~~~~p~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~e-~~~~i~~P~~~~~~~~~ 250 (369)
....+..+++.|++=... ..+|...+...-..+++.+|-+..... ..+.||..+- .-..++.|-.. .
T Consensus 66 G~S~l~~~d~~tg~~~~~-~~l~~~~FgEGit~~~d~l~qLTWk~~------~~f~yd~~tl~~~~~~~y~~EG-----W 133 (264)
T PF05096_consen 66 GQSSLRKVDLETGKVLQS-VPLPPRYFGEGITILGDKLYQLTWKEG------TGFVYDPNTLKKIGTFPYPGEG-----W 133 (264)
T ss_dssp TEEEEEEEETTTSSEEEE-EE-TTT--EEEEEEETTEEEEEESSSS------EEEEEETTTTEEEEEEE-SSS-------
T ss_pred CcEEEEEEECCCCcEEEE-EECCccccceeEEEECCEEEEEEecCC------eEEEEccccceEEEEEecCCcc-----e
Confidence 467788999999865444 455655555455888999999999874 8899999863 33334555322 3
Q ss_pred eeEEEEECCcEEEEEecCCCeEEEEEeccCCCCCCeeEEEEEcccccccccccccceee-eeEEeeeccCCCCCCeEEEE
Q 036467 251 QIEVGVFRGEFAMFHMWREDRVEIWTMKDFGARESWTRMFVIGRRALINFDNYAFVHLK-PVCEMMNLSNGNGKNFLLIE 329 (369)
Q Consensus 251 ~~~l~~~~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~ 329 (369)
+ |...+..|.+-.+ +-.++.++- +....+.+|....-- ....... .-++ + |.|+-.
T Consensus 134 G--Lt~dg~~Li~SDG----S~~L~~~dP----~~f~~~~~i~V~~~g----~pv~~LNELE~i------~---G~IyAN 190 (264)
T PF05096_consen 134 G--LTSDGKRLIMSDG----SSRLYFLDP----ETFKEVRTIQVTDNG----RPVSNLNELEYI------N---GKIYAN 190 (264)
T ss_dssp E--EEECSSCEEEE-S----SSEEEEE-T----TT-SEEEEEE-EETT----EE---EEEEEEE------T---TEEEEE
T ss_pred E--EEcCCCEEEEECC----ccceEEECC----cccceEEEEEEEECC----EECCCcEeEEEE------c---CEEEEE
Confidence 3 3333345555433 234666763 345566665543210 0000111 1233 3 677776
Q ss_pred EC-CCeEEEEECCCCeEEEe
Q 036467 330 KG-DGELILYDFENEIATDF 348 (369)
Q Consensus 330 ~~-~~~~~~ydl~~~~~~~v 348 (369)
.. ...++..|++|+++...
T Consensus 191 VW~td~I~~Idp~tG~V~~~ 210 (264)
T PF05096_consen 191 VWQTDRIVRIDPETGKVVGW 210 (264)
T ss_dssp ETTSSEEEEEETTT-BEEEE
T ss_pred eCCCCeEEEEeCCCCeEEEE
Confidence 54 34589999999997554
No 89
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=69.28 E-value=81 Score=27.82 Aligned_cols=223 Identities=11% Similarity=0.087 Sum_probs=113.6
Q ss_pred EEEeeecccEEEeeccCCceEEEEcCCccceeeCCCCCCCCCCCc----cc--ceEEE--EE-eeeCCCCCeEEEEEEee
Q 036467 91 EISGSCNGLLCISDQSCNEDIFLFNPSTKKYKKLPVPEFDVPTIE----TT--CFTSL--GF-GYHQADDDYKVIRSIYL 161 (369)
Q Consensus 91 ~~~~s~~GLl~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~----~~--~~~~~--~~-g~d~~~~~ykvv~~~~~ 161 (369)
.+--+-+|-|-+... ....+-=.||.|++....|......+... +. .++.. ++ -.|+.+..++-+-+..
T Consensus 66 dvapapdG~VWft~q-g~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~evt~f~lp~- 143 (353)
T COG4257 66 DVAPAPDGAVWFTAQ-GTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEVTRFPLPL- 143 (353)
T ss_pred ccccCCCCceEEecC-ccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcceeEEecCcccceEEeeccc-
Confidence 344456777766653 44566677999999999887665433210 00 00000 11 1123222222222211
Q ss_pred eCCCcccCCCCcceEEEEEcCCCceEEcc----CCC-C----eeec------cCCc--EEECceEEEEeecCCCCCceeE
Q 036467 162 YDKPFVDIDSYECEARVYSLASDKWKKIN----GGI-P----YHIS------SRAA--VCFNECLIWKASRGLGRGMTVL 224 (369)
Q Consensus 162 ~~~~~~~~~~~~~~~~vys~~t~~W~~~~----~~~-p----~~~~------~~~~--v~~~G~lyw~~~~~~~~~~~~~ 224 (369)
+......+--||+...+-|=+-. ..+ | .... ...+ +.-||.+|+....+ ..
T Consensus 144 ------~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyaslag------na 211 (353)
T COG4257 144 ------EHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQGGGPYGICATPDGSVWYASLAG------NA 211 (353)
T ss_pred ------ccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCCCCCcceEECCCCcEEEEeccc------cc
Confidence 11234566778888888884320 000 0 0000 1122 55589999886655 38
Q ss_pred EEEEECCCcceeeeCCCCCcCCCCCceeEEEEECCcEEEEEecCCCeEEEEEeccCCCCCCeeEEEEEcccccccccccc
Q 036467 225 VVAFDMNREEFKEIHRPEYKDSHDKCQIEVGVFRGEFAMFHMWREDRVEIWTMKDFGARESWTRMFVIGRRALINFDNYA 304 (369)
Q Consensus 225 il~fD~~~e~~~~i~~P~~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~ 304 (369)
|.-.|+.+..-.+++.|...... ..-.-....|++.....- .=.+-..+- ...+|..- .++-..-
T Consensus 212 iaridp~~~~aev~p~P~~~~~g--sRriwsdpig~~wittwg---~g~l~rfdP--s~~sW~ey-pLPgs~a------- 276 (353)
T COG4257 212 IARIDPFAGHAEVVPQPNALKAG--SRRIWSDPIGRAWITTWG---TGSLHRFDP--SVTSWIEY-PLPGSKA------- 276 (353)
T ss_pred eEEcccccCCcceecCCCccccc--ccccccCccCcEEEeccC---CceeeEeCc--ccccceee-eCCCCCC-------
Confidence 99999999988889999874211 110001112333332111 111112221 22446542 2221111
Q ss_pred cceeeeeEEeeeccCCCCCCeEEEEE-CCCeEEEEECCCCeEEEeEEe
Q 036467 305 FVHLKPVCEMMNLSNGNGKNFLLIEK-GDGELILYDFENEIATDFKIQ 351 (369)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~ydl~~~~~~~v~~~ 351 (369)
....+.+ .+. |.|.+.. ..+-+.-||+++.++..+.++
T Consensus 277 --rpys~rV----D~~---grVW~sea~agai~rfdpeta~ftv~p~p 315 (353)
T COG4257 277 --RPYSMRV----DRH---GRVWLSEADAGAIGRFDPETARFTVLPIP 315 (353)
T ss_pred --Ccceeee----ccC---CcEEeeccccCceeecCcccceEEEecCC
Confidence 1233455 555 7888854 334599999999999888654
No 90
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=67.47 E-value=1.1e+02 Score=28.87 Aligned_cols=156 Identities=10% Similarity=0.084 Sum_probs=79.2
Q ss_pred cceEEEEEcCCCceEEccCCCCeeeccCCcEEECceEEEEeecCCCCCceeEEEEEECCCcceee-e---CCCCCcCCCC
Q 036467 173 ECEARVYSLASDKWKKINGGIPYHISSRAAVCFNECLIWKASRGLGRGMTVLVVAFDMNREEFKE-I---HRPEYKDSHD 248 (369)
Q Consensus 173 ~~~~~vys~~t~~W~~~~~~~p~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~e~~~~-i---~~P~~~~~~~ 248 (369)
...+.+|++.+..=+..-..+-- ...+-.+.-||.+...+...+ .|-.||..+...-. + ..|-..
T Consensus 47 S~rvqly~~~~~~~~k~~srFk~-~v~s~~fR~DG~LlaaGD~sG------~V~vfD~k~r~iLR~~~ah~apv~~---- 115 (487)
T KOG0310|consen 47 SVRVQLYSSVTRSVRKTFSRFKD-VVYSVDFRSDGRLLAAGDESG------HVKVFDMKSRVILRQLYAHQAPVHV---- 115 (487)
T ss_pred ccEEEEEecchhhhhhhHHhhcc-ceeEEEeecCCeEEEccCCcC------cEEEeccccHHHHHHHhhccCceeE----
Confidence 57899999987543321011100 011122566799988776553 78899966643322 1 233322
Q ss_pred CceeEEEEECCcEEEEEecCCCeEEEEEeccCCCCCCeeEEEEEcccccccccccccceeeeeEEeeeccCCCCCCeEEE
Q 036467 249 KCQIEVGVFRGEFAMFHMWREDRVEIWTMKDFGARESWTRMFVIGRRALINFDNYAFVHLKPVCEMMNLSNGNGKNFLLI 328 (369)
Q Consensus 249 ~~~~~l~~~~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 328 (369)
......++.+.+. ..+.....+|.+... . + +..+.-.. ...+...+ + ..+ +.|++
T Consensus 116 ---~~f~~~d~t~l~s-~sDd~v~k~~d~s~a---~--v-~~~l~~ht---------DYVR~g~~--~-~~~---~hivv 170 (487)
T KOG0310|consen 116 ---TKFSPQDNTMLVS-GSDDKVVKYWDLSTA---Y--V-QAELSGHT---------DYVRCGDI--S-PAN---DHIVV 170 (487)
T ss_pred ---EEecccCCeEEEe-cCCCceEEEEEcCCc---E--E-EEEecCCc---------ceeEeecc--c-cCC---CeEEE
Confidence 1222334444443 345568889999851 1 2 33332111 12333333 1 333 66777
Q ss_pred EEC-CCeEEEEECCCCeEEEeEEecCCCeeEEeeeeec
Q 036467 329 EKG-DGELILYDFENEIATDFKIQRAPRWFSVTTFVES 365 (369)
Q Consensus 329 ~~~-~~~~~~ydl~~~~~~~v~~~~~~~~~~~~~y~~S 365 (369)
... ++.+-.||.++.+-+.+.+. +..--..++|.+|
T Consensus 171 tGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lps 207 (487)
T KOG0310|consen 171 TGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPS 207 (487)
T ss_pred ecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCC
Confidence 654 45699999999873333443 2222334455443
No 91
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=66.04 E-value=85 Score=26.85 Aligned_cols=69 Identities=13% Similarity=0.092 Sum_probs=43.9
Q ss_pred CceEEEEeecCCCCCceeEEEEEECCCcceeeeCCCCCcCCCCCceeEEEEECCcEEEEEecCCCeEEEEEeccCCCCCC
Q 036467 206 NECLIWKASRGLGRGMTVLVVAFDMNREEFKEIHRPEYKDSHDKCQIEVGVFRGEFAMFHMWREDRVEIWTMKDFGARES 285 (369)
Q Consensus 206 ~G~lyw~~~~~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~~iW~l~~~~~~~~ 285 (369)
+|.+||...... .|..+|+.+++...+.+|... ...+..-+|+|++.... .+.+. + .. ...
T Consensus 11 ~g~l~~~D~~~~------~i~~~~~~~~~~~~~~~~~~~------G~~~~~~~g~l~v~~~~---~~~~~--d-~~-~g~ 71 (246)
T PF08450_consen 11 DGRLYWVDIPGG------RIYRVDPDTGEVEVIDLPGPN------GMAFDRPDGRLYVADSG---GIAVV--D-PD-TGK 71 (246)
T ss_dssp TTEEEEEETTTT------EEEEEETTTTEEEEEESSSEE------EEEEECTTSEEEEEETT---CEEEE--E-TT-TTE
T ss_pred CCEEEEEEcCCC------EEEEEECCCCeEEEEecCCCc------eEEEEccCCEEEEEEcC---ceEEE--e-cC-CCc
Confidence 699999987653 899999999999888777622 22222135777776532 33333 3 22 245
Q ss_pred eeEEEEEc
Q 036467 286 WTRMFVIG 293 (369)
Q Consensus 286 W~~~~~i~ 293 (369)
++.+...+
T Consensus 72 ~~~~~~~~ 79 (246)
T PF08450_consen 72 VTVLADLP 79 (246)
T ss_dssp EEEEEEEE
T ss_pred EEEEeecc
Confidence 77777664
No 92
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=65.52 E-value=21 Score=26.32 Aligned_cols=41 Identities=17% Similarity=0.394 Sum_probs=30.9
Q ss_pred CceEEEEcCCcc-ceeeCCCCCCCCCCCcccceEEEEEeeeCCCCCeEEEEEE
Q 036467 108 NEDIFLFNPSTK-KYKKLPVPEFDVPTIETTCFTSLGFGYHQADDDYKVIRSI 159 (369)
Q Consensus 108 ~~~~~V~NP~T~-~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~ 159 (369)
...++++||.|+ .|...- + ....+.+-+|+..+.|+||.+.
T Consensus 10 rA~V~~yd~~tKk~WvPs~--~---------~~~~V~~y~~~~~ntfRIi~~~ 51 (111)
T cd01206 10 RAHVFQIDPKTKKNWIPAS--K---------HAVTVSYFYDSTRNVYRIISVG 51 (111)
T ss_pred eeEEEEECCCCcceeEeCC--C---------CceeEEEEecCCCcEEEEEEec
Confidence 457999999986 776433 2 1246678899999999999964
No 93
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=65.42 E-value=1.7e+02 Score=30.18 Aligned_cols=145 Identities=14% Similarity=0.119 Sum_probs=66.5
Q ss_pred cceEEEEEcCCCceEEccCCCCeeecc-CCcEEECceEEEEeecCCCCCceeEEEEEECCCcceeeeCCCCCcCCCCCce
Q 036467 173 ECEARVYSLASDKWKKINGGIPYHISS-RAAVCFNECLIWKASRGLGRGMTVLVVAFDMNREEFKEIHRPEYKDSHDKCQ 251 (369)
Q Consensus 173 ~~~~~vys~~t~~W~~~~~~~p~~~~~-~~~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~ 251 (369)
...+.+|...++.=..+ -.++.... .-.|..+|..--.+.++ ..|-..++.+..-...--+... ..
T Consensus 75 ~~tv~~y~fps~~~~~i--L~Rftlp~r~~~v~g~g~~iaagsdD------~~vK~~~~~D~s~~~~lrgh~a-----pV 141 (933)
T KOG1274|consen 75 QNTVLRYKFPSGEEDTI--LARFTLPIRDLAVSGSGKMIAAGSDD------TAVKLLNLDDSSQEKVLRGHDA-----PV 141 (933)
T ss_pred cceEEEeeCCCCCccce--eeeeeccceEEEEecCCcEEEeecCc------eeEEEEeccccchheeecccCC-----ce
Confidence 46777888766543322 01111111 11244555565555554 2566666655433332111111 11
Q ss_pred eEEEE-ECCcEEEEEecCCCeEEEEEeccCCCCCCeeEEEEEcccccccccccccceeeeeEEeeeccCCCCCCeEEEEE
Q 036467 252 IEVGV-FRGEFAMFHMWREDRVEIWTMKDFGARESWTRMFVIGRRALINFDNYAFVHLKPVCEMMNLSNGNGKNFLLIEK 330 (369)
Q Consensus 252 ~~l~~-~~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 330 (369)
..|-- -+|.+..+..+++ .+.||.+++......|..+..-..... .++.+-.+-+.+ ||.+.+..
T Consensus 142 l~l~~~p~~~fLAvss~dG-~v~iw~~~~~~~~~tl~~v~k~n~~~~----------s~i~~~~aW~Pk---~g~la~~~ 207 (933)
T KOG1274|consen 142 LQLSYDPKGNFLAVSSCDG-KVQIWDLQDGILSKTLTGVDKDNEFIL----------SRICTRLAWHPK---GGTLAVPP 207 (933)
T ss_pred eeeeEcCCCCEEEEEecCc-eEEEEEcccchhhhhcccCCccccccc----------cceeeeeeecCC---CCeEEeec
Confidence 11111 1466666665544 899999997543445555432221111 122222111133 36666665
Q ss_pred CCCeEEEEECCCCe
Q 036467 331 GDGELILYDFENEI 344 (369)
Q Consensus 331 ~~~~~~~ydl~~~~ 344 (369)
-++.|.+|+.++-.
T Consensus 208 ~d~~Vkvy~r~~we 221 (933)
T KOG1274|consen 208 VDNTVKVYSRKGWE 221 (933)
T ss_pred cCCeEEEEccCCce
Confidence 55556666665444
No 94
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=65.03 E-value=90 Score=26.80 Aligned_cols=142 Identities=10% Similarity=0.086 Sum_probs=73.3
Q ss_pred ecccEEEeeccCCceEEEEcCCccceeeCCCCCCCCCCCcccceEEEEEeeeCCCCCeEEEEEEeeeCCCcccCCCCcce
Q 036467 96 CNGLLCISDQSCNEDIFLFNPSTKKYKKLPVPEFDVPTIETTCFTSLGFGYHQADDDYKVIRSIYLYDKPFVDIDSYECE 175 (369)
Q Consensus 96 ~~GLl~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~ 175 (369)
.+|=-|+..+ .++.+-+|||..+..++-=.... . .....+..+|.. |+- ..+....
T Consensus 27 ~dGnY~ltcG-sdrtvrLWNp~rg~liktYsghG---~----EVlD~~~s~Dns----kf~------------s~GgDk~ 82 (307)
T KOG0316|consen 27 VDGNYCLTCG-SDRTVRLWNPLRGALIKTYSGHG---H----EVLDAALSSDNS----KFA------------SCGGDKA 82 (307)
T ss_pred cCCCEEEEcC-CCceEEeecccccceeeeecCCC---c----eeeecccccccc----ccc------------cCCCCce
Confidence 3455555553 67889999999887664321111 0 223333444422 111 1234567
Q ss_pred EEEEEcCCC----ceEEccCCCCeeecc-CCcEEECceEEEEeecCCCCCceeEEEEEECCCcceeeeCCCCCcCCCCCc
Q 036467 176 ARVYSLASD----KWKKINGGIPYHISS-RAAVCFNECLIWKASRGLGRGMTVLVVAFDMNREEFKEIHRPEYKDSHDKC 250 (369)
Q Consensus 176 ~~vys~~t~----~W~~~~~~~p~~~~~-~~~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~ 250 (369)
+.+++-.|+ +||.-........+. ..+|.+.|.+ + ..+-++|..+..+.+|+.=.... .
T Consensus 83 v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~Sgsf------D------~s~r~wDCRS~s~ePiQildea~----D 146 (307)
T KOG0316|consen 83 VQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSF------D------SSVRLWDCRSRSFEPIQILDEAK----D 146 (307)
T ss_pred EEEEEcccCeeeeecccccceeeEEEecCcceEEEeccc------c------ceeEEEEcccCCCCccchhhhhc----C
Confidence 888888875 455431111111111 2234444433 2 38999999999999987655442 2
Q ss_pred eeEEEEECCcEEEEEecCCCeEEEEEec
Q 036467 251 QIEVGVFRGEFAMFHMWREDRVEIWTMK 278 (369)
Q Consensus 251 ~~~l~~~~G~L~~~~~~~~~~~~iW~l~ 278 (369)
...-+...+...+....+ ..++.+-+.
T Consensus 147 ~V~Si~v~~heIvaGS~D-GtvRtydiR 173 (307)
T KOG0316|consen 147 GVSSIDVAEHEIVAGSVD-GTVRTYDIR 173 (307)
T ss_pred ceeEEEecccEEEeeccC-CcEEEEEee
Confidence 333344455555554433 345444443
No 95
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=61.90 E-value=17 Score=34.53 Aligned_cols=147 Identities=11% Similarity=-0.011 Sum_probs=76.6
Q ss_pred EEcCCccceeeCCCCCCCCCCCccc--ceEEEEEeeeCCCCCeEEEEEEeeeCCCcccCCCCcceEEEEEcCCCceEEcc
Q 036467 113 LFNPSTKKYKKLPVPEFDVPTIETT--CFTSLGFGYHQADDDYKVIRSIYLYDKPFVDIDSYECEARVYSLASDKWKKIN 190 (369)
Q Consensus 113 V~NP~T~~~~~LP~~~~~~~~~~~~--~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~vys~~t~~W~~~~ 190 (369)
.--|.|-.|-++|+........... .....-+.+++.++.--+.. .-++...-..+++|+-+.+.|..+.
T Consensus 233 ~q~ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYG--------GWdG~~~l~DFW~Y~v~e~~W~~iN 304 (723)
T KOG2437|consen 233 SQQEYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYG--------GWDGTQDLADFWAYSVKENQWTCIN 304 (723)
T ss_pred hcccccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEec--------CcccchhHHHHHhhcCCcceeEEee
Confidence 3356777888887765321111000 12233455554432211111 1122234556889999999999882
Q ss_pred CC--CCeeeccCCcEEECc--eEEEEeecCCC-----CCceeEEEEEECCCcceeeeCCCCCcCCCCC--ceeEEEEEC-
Q 036467 191 GG--IPYHISSRAAVCFNE--CLIWKASRGLG-----RGMTVLVVAFDMNREEFKEIHRPEYKDSHDK--CQIEVGVFR- 258 (369)
Q Consensus 191 ~~--~p~~~~~~~~v~~~G--~lyw~~~~~~~-----~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~--~~~~l~~~~- 258 (369)
.. .|-....++.|..-. ++|-++..-.. -....-+-.||.++..|..+..-...+.... +...+++.+
T Consensus 305 ~~t~~PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~ 384 (723)
T KOG2437|consen 305 RDTEGPGARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSE 384 (723)
T ss_pred cCCCCCcchhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecC
Confidence 22 233333344443333 67776643211 1223468899999999999966554321111 222344443
Q ss_pred -CcEEEEEec
Q 036467 259 -GEFAMFHMW 267 (369)
Q Consensus 259 -G~L~~~~~~ 267 (369)
|.+|+.+++
T Consensus 385 k~~iyVfGGr 394 (723)
T KOG2437|consen 385 KHMIYVFGGR 394 (723)
T ss_pred cceEEEecCe
Confidence 558888765
No 96
>PF13013 F-box-like_2: F-box-like domain
Probab=61.24 E-value=2.3 Score=31.55 Aligned_cols=27 Identities=19% Similarity=0.310 Sum_probs=23.5
Q ss_pred CCcHHHHHHHhccCCccccceeeeccc
Q 036467 1 NLPTDIITDIFTRLPVKSLIRFKCVSK 27 (369)
Q Consensus 1 ~LP~Dll~eIL~rLp~~~l~r~r~VcK 27 (369)
+||+||++.|+..-..+++...-..|+
T Consensus 24 DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 24 DLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred hChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 599999999999999998877766666
No 97
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=59.72 E-value=1.2e+02 Score=26.29 Aligned_cols=138 Identities=12% Similarity=0.087 Sum_probs=0.0
Q ss_pred EEEeecCCCCCceeEEEEEECCCcceeeeCCCCCcCCCCCceeEEEEECCcEEEEEecCCCeEEEEEeccCCC----CCC
Q 036467 210 IWKASRGLGRGMTVLVVAFDMNREEFKEIHRPEYKDSHDKCQIEVGVFRGEFAMFHMWREDRVEIWTMKDFGA----RES 285 (369)
Q Consensus 210 yw~~~~~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~~iW~l~~~~~----~~~ 285 (369)
|..+++..+......+-+.|-.++ -..-+.|.-........+.-+.+-..+.+.+.. ..+.=|...+... +..
T Consensus 24 ~l~agn~~G~iav~sl~sl~s~sa-~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~gd--G~V~gw~W~E~~es~~~K~l 100 (325)
T KOG0649|consen 24 YLFAGNLFGDIAVLSLKSLDSGSA-EPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGGD--GLVYGWEWNEEEESLATKRL 100 (325)
T ss_pred EEEEecCCCeEEEEEehhhhcccc-CCCCCcceeeccccCCCeeeeeeehhheeeccC--ceEEEeeehhhhhhccchhh
Q ss_pred eeEE--EEEcccccccccccccceeeeeEEeeeccCCCCCCeEEEEECCCeEEEEECCCCeEEEeEEecCCCeeEEeeee
Q 036467 286 WTRM--FVIGRRALINFDNYAFVHLKPVCEMMNLSNGNGKNFLLIEKGDGELILYDFENEIATDFKIQRAPRWFSVTTFV 363 (369)
Q Consensus 286 W~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ydl~~~~~~~v~~~~~~~~~~~~~y~ 363 (369)
|+.+ ++.+...++ .+..+.+ ... .+.|++..++..++..|+|++++++. ++|...+.++.+-.
T Consensus 101 we~~~P~~~~~~evP--------eINam~l----dP~--enSi~~AgGD~~~y~~dlE~G~i~r~-~rGHtDYvH~vv~R 165 (325)
T KOG0649|consen 101 WEVKIPMQVDAVEVP--------EINAMWL----DPS--ENSILFAGGDGVIYQVDLEDGRIQRE-YRGHTDYVHSVVGR 165 (325)
T ss_pred hhhcCccccCcccCC--------ccceeEe----ccC--CCcEEEecCCeEEEEEEecCCEEEEE-EcCCcceeeeeeec
Q ss_pred ec
Q 036467 364 ES 365 (369)
Q Consensus 364 ~S 365 (369)
++
T Consensus 166 ~~ 167 (325)
T KOG0649|consen 166 NA 167 (325)
T ss_pred cc
No 98
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=59.25 E-value=1.2e+02 Score=26.49 Aligned_cols=112 Identities=8% Similarity=0.036 Sum_probs=65.8
Q ss_pred ECceEEEEeecCCCCCceeEEEEEECCCccee-eeCCCCCcCCCCCceeEEEEECCcEEEEEecCCCeEEEEEeccCCCC
Q 036467 205 FNECLIWKASRGLGRGMTVLVVAFDMNREEFK-EIHRPEYKDSHDKCQIEVGVFRGEFAMFHMWREDRVEIWTMKDFGAR 283 (369)
Q Consensus 205 ~~G~lyw~~~~~~~~~~~~~il~fD~~~e~~~-~i~~P~~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~~iW~l~~~~~~ 283 (369)
.+|.+|=-++... ...|..+|+.+++.. ..++|... +.=-+...+++|+.+.-. +... .+.+-
T Consensus 54 ~~g~LyESTG~yG----~S~l~~~d~~tg~~~~~~~l~~~~-----FgEGit~~~d~l~qLTWk-~~~~--f~yd~---- 117 (264)
T PF05096_consen 54 DDGTLYESTGLYG----QSSLRKVDLETGKVLQSVPLPPRY-----FGEGITILGDKLYQLTWK-EGTG--FVYDP---- 117 (264)
T ss_dssp ETTEEEEEECSTT----EEEEEEEETTTSSEEEEEE-TTT-------EEEEEEETTEEEEEESS-SSEE--EEEET----
T ss_pred CCCEEEEeCCCCC----cEEEEEEECCCCcEEEEEECCccc-----cceeEEEECCEEEEEEec-CCeE--EEEcc----
Confidence 5788887776543 359999999998775 55888865 344567778998888753 3232 23332
Q ss_pred CCeeEEEEEcccccccccccccceeeeeEEeeeccCCCCCCeEEEEECCCeEEEEECCCCeE-EEeEE
Q 036467 284 ESWTRMFVIGRRALINFDNYAFVHLKPVCEMMNLSNGNGKNFLLIEKGDGELILYDFENEIA-TDFKI 350 (369)
Q Consensus 284 ~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ydl~~~~~-~~v~~ 350 (369)
....++.++++.. ..-|+ ..+ |..+++..+..++...|+++-+. ++|.+
T Consensus 118 ~tl~~~~~~~y~~------------EGWGL----t~d--g~~Li~SDGS~~L~~~dP~~f~~~~~i~V 167 (264)
T PF05096_consen 118 NTLKKIGTFPYPG------------EGWGL----TSD--GKRLIMSDGSSRLYFLDPETFKEVRTIQV 167 (264)
T ss_dssp TTTEEEEEEE-SS------------S--EE----EEC--SSCEEEE-SSSEEEEE-TTT-SEEEEEE-
T ss_pred ccceEEEEEecCC------------cceEE----EcC--CCEEEEECCccceEEECCcccceEEEEEE
Confidence 2356666665432 22344 324 36777777667799999987653 55544
No 99
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=56.54 E-value=6.6 Score=35.27 Aligned_cols=35 Identities=14% Similarity=0.373 Sum_probs=29.4
Q ss_pred CCcHHHHHHHhccCC--------ccccceeeecccchhcccCC
Q 036467 1 NLPTDIITDIFTRLP--------VKSLIRFKCVSKSMYALVHN 35 (369)
Q Consensus 1 ~LP~Dll~eIL~rLp--------~~~l~r~r~VcK~W~~li~~ 35 (369)
+||.+++.+|+.|.. .++.+.+..||+.|+.+..+
T Consensus 47 ~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~ 89 (355)
T KOG2502|consen 47 ALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKE 89 (355)
T ss_pred cCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccc
Confidence 589999999999987 23688999999999997554
No 100
>PLN00181 protein SPA1-RELATED; Provisional
Probab=55.78 E-value=2.6e+02 Score=29.04 Aligned_cols=149 Identities=10% Similarity=0.040 Sum_probs=68.6
Q ss_pred CCceEEEEcCCccceeeCCCCCCCCCCCcccceEEEEEeeeCCCCCeEEEEEEeeeCCCcccCCCCcceEEEEEcCCCc-
Q 036467 107 CNEDIFLFNPSTKKYKKLPVPEFDVPTIETTCFTSLGFGYHQADDDYKVIRSIYLYDKPFVDIDSYECEARVYSLASDK- 185 (369)
Q Consensus 107 ~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~vys~~t~~- 185 (369)
.++.+.|||..+++.... ... . ......+.+++..+.+-+.+ . ....+.+|+..++.
T Consensus 553 ~Dg~v~lWd~~~~~~~~~--~~~-H------~~~V~~l~~~p~~~~~L~Sg--s-----------~Dg~v~iWd~~~~~~ 610 (793)
T PLN00181 553 FEGVVQVWDVARSQLVTE--MKE-H------EKRVWSIDYSSADPTLLASG--S-----------DDGSVKLWSINQGVS 610 (793)
T ss_pred CCCeEEEEECCCCeEEEE--ecC-C------CCCEEEEEEcCCCCCEEEEE--c-----------CCCEEEEEECCCCcE
Confidence 567889999877654321 110 0 11233455554433332222 1 24567888876642
Q ss_pred eEEccCCCCeeeccCCcEEE---CceEEEEeecCCCCCceeEEEEEECCCcceeeeCCCCCcCCCCCceeEEEEECCcEE
Q 036467 186 WKKINGGIPYHISSRAAVCF---NECLIWKASRGLGRGMTVLVVAFDMNREEFKEIHRPEYKDSHDKCQIEVGVFRGEFA 262 (369)
Q Consensus 186 W~~~~~~~p~~~~~~~~v~~---~G~lyw~~~~~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~l~~~~G~L~ 262 (369)
...+..... -..+.+ +|.....+..+ ..|..+|+.+..-....+.. +......+.-.+|...
T Consensus 611 ~~~~~~~~~-----v~~v~~~~~~g~~latgs~d------g~I~iwD~~~~~~~~~~~~~----h~~~V~~v~f~~~~~l 675 (793)
T PLN00181 611 IGTIKTKAN-----ICCVQFPSESGRSLAFGSAD------HKVYYYDLRNPKLPLCTMIG----HSKTVSYVRFVDSSTL 675 (793)
T ss_pred EEEEecCCC-----eEEEEEeCCCCCEEEEEeCC------CeEEEEECCCCCccceEecC----CCCCEEEEEEeCCCEE
Confidence 222210000 001211 35554444443 28889998764311111111 1111122323356554
Q ss_pred EEEecCCCeEEEEEeccCCCCCCeeEEEEEc
Q 036467 263 MFHMWREDRVEIWTMKDFGARESWTRMFVIG 293 (369)
Q Consensus 263 ~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~ 293 (369)
+... ....+.||-+........|..+..+.
T Consensus 676 vs~s-~D~~ikiWd~~~~~~~~~~~~l~~~~ 705 (793)
T PLN00181 676 VSSS-TDNTLKLWDLSMSISGINETPLHSFM 705 (793)
T ss_pred EEEE-CCCEEEEEeCCCCccccCCcceEEEc
Confidence 4444 45589999987532223455555443
No 101
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=53.42 E-value=1.8e+02 Score=26.53 Aligned_cols=124 Identities=14% Similarity=0.183 Sum_probs=67.5
Q ss_pred CceEEEEeecCCCCCceeEEEEEECCCcc--eee---eCCCCCcCCCCCceeEEEEE-CCcEEEEEecCCCeEEEEEecc
Q 036467 206 NECLIWKASRGLGRGMTVLVVAFDMNREE--FKE---IHRPEYKDSHDKCQIEVGVF-RGEFAMFHMWREDRVEIWTMKD 279 (369)
Q Consensus 206 ~G~lyw~~~~~~~~~~~~~il~fD~~~e~--~~~---i~~P~~~~~~~~~~~~l~~~-~G~L~~~~~~~~~~~~iW~l~~ 279 (369)
+|...|....+. +.|..|+++.+. +.. +.+|... .-..++-. +|+.+.+.......+.++.++.
T Consensus 154 dg~~v~v~dlG~-----D~v~~~~~~~~~~~l~~~~~~~~~~G~-----GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~ 223 (345)
T PF10282_consen 154 DGRFVYVPDLGA-----DRVYVYDIDDDTGKLTPVDSIKVPPGS-----GPRHLAFSPDGKYAYVVNELSNTVSVFDYDP 223 (345)
T ss_dssp TSSEEEEEETTT-----TEEEEEEE-TTS-TEEEEEEEECSTTS-----SEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred CCCEEEEEecCC-----CEEEEEEEeCCCceEEEeeccccccCC-----CCcEEEEcCCcCEEEEecCCCCcEEEEeecc
Confidence 566555554443 388888887765 533 3566554 12233333 4655544444456888888884
Q ss_pred CCCCCCeeEEEEEcccccccccccccceeeeeEEeeeccCCCCCCeEEEEEC-CCeEEEEEC--CCCeEEEeEE
Q 036467 280 FGARESWTRMFVIGRRALINFDNYAFVHLKPVCEMMNLSNGNGKNFLLIEKG-DGELILYDF--ENEIATDFKI 350 (369)
Q Consensus 280 ~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~ydl--~~~~~~~v~~ 350 (369)
.+..++.+.+++...-- + .......-+.+ ..+ |..+|+... ...|..|++ ++++++.++.
T Consensus 224 --~~g~~~~~~~~~~~~~~-~--~~~~~~~~i~i----spd--g~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~ 286 (345)
T PF10282_consen 224 --SDGSLTEIQTISTLPEG-F--TGENAPAEIAI----SPD--GRFLYVSNRGSNSISVFDLDPATGTLTLVQT 286 (345)
T ss_dssp --TTTEEEEEEEEESCETT-S--CSSSSEEEEEE-----TT--SSEEEEEECTTTEEEEEEECTTTTTEEEEEE
T ss_pred --cCCceeEEEEeeecccc-c--cccCCceeEEE----ecC--CCEEEEEeccCCEEEEEEEecCCCceEEEEE
Confidence 22367777777653321 1 01112233444 555 355666543 345888887 5678888764
No 102
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=52.08 E-value=2.3e+02 Score=27.40 Aligned_cols=107 Identities=9% Similarity=0.025 Sum_probs=50.5
Q ss_pred eEEEEEcCCC--ceEEccCCCC----eeeccCCc-EEEC-ceEEEEeecCCCCCceeEEEEEECCCc--ceeeeCCCCCc
Q 036467 175 EARVYSLASD--KWKKINGGIP----YHISSRAA-VCFN-ECLIWKASRGLGRGMTVLVVAFDMNRE--EFKEIHRPEYK 244 (369)
Q Consensus 175 ~~~vys~~t~--~W~~~~~~~p----~~~~~~~~-v~~~-G~lyw~~~~~~~~~~~~~il~fD~~~e--~~~~i~~P~~~ 244 (369)
.+..++..++ .|+.- ...+ .......+ +..+ |.+|.-...+ .|.++|..+. .|+.-.-+...
T Consensus 72 ~l~AlD~~tG~~~W~~~-~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g-------~v~AlD~~TG~~~W~~~~~~~~~ 143 (488)
T cd00216 72 ALFALDAATGKVLWRYD-PKLPADRGCCDVVNRGVAYWDPRKVFFGTFDG-------RLVALDAETGKQVWKFGNNDQVP 143 (488)
T ss_pred cEEEEECCCChhhceeC-CCCCccccccccccCCcEEccCCeEEEecCCC-------eEEEEECCCCCEeeeecCCCCcC
Confidence 4555566554 68754 2211 11111223 4446 8898876554 8999999864 45443222210
Q ss_pred CCCCCceeEEEEECCcEEEEEecC-----CCeEEEEEeccCCCCCCeeEEE
Q 036467 245 DSHDKCQIEVGVFRGEFAMFHMWR-----EDRVEIWTMKDFGARESWTRMF 290 (369)
Q Consensus 245 ~~~~~~~~~l~~~~G~L~~~~~~~-----~~~~~iW~l~~~~~~~~W~~~~ 290 (369)
. ........+..+|.+++..... ...-.++.++....+..|....
T Consensus 144 ~-~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~ 193 (488)
T cd00216 144 P-GYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYT 193 (488)
T ss_pred c-ceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeec
Confidence 0 0000112234456555432211 0122567776544456686544
No 103
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=50.38 E-value=1.7e+02 Score=25.30 Aligned_cols=45 Identities=22% Similarity=0.190 Sum_probs=34.0
Q ss_pred EEECceEEEEeecCCCCCceeEEEEEECCCcce-eeeCCCCCcCCCCCceeEEEEECCc
Q 036467 203 VCFNECLIWKASRGLGRGMTVLVVAFDMNREEF-KEIHRPEYKDSHDKCQIEVGVFRGE 260 (369)
Q Consensus 203 v~~~G~lyw~~~~~~~~~~~~~il~fD~~~e~~-~~i~~P~~~~~~~~~~~~l~~~~G~ 260 (369)
+.-+|.+|..+.++. .|..+|+.+++. ..+.+|... ..-+.++|+
T Consensus 219 ID~eG~L~Va~~ng~------~V~~~dp~tGK~L~eiklPt~q-------itsccFgGk 264 (310)
T KOG4499|consen 219 IDTEGNLYVATFNGG------TVQKVDPTTGKILLEIKLPTPQ-------ITSCCFGGK 264 (310)
T ss_pred EccCCcEEEEEecCc------EEEEECCCCCcEEEEEEcCCCc-------eEEEEecCC
Confidence 666899999998875 899999999876 557888543 444556664
No 104
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=50.01 E-value=2.5e+02 Score=27.26 Aligned_cols=130 Identities=14% Similarity=0.266 Sum_probs=69.1
Q ss_pred ceEEEEcCCccceeeCCCCCCCCCCCcccceEEEEEeeeCCCCCeEEEEEEeeeCCCcccCCCCcceEEEEEcCCCceEE
Q 036467 109 EDIFLFNPSTKKYKKLPVPEFDVPTIETTCFTSLGFGYHQADDDYKVIRSIYLYDKPFVDIDSYECEARVYSLASDKWKK 188 (369)
Q Consensus 109 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~vys~~t~~W~~ 188 (369)
.++++.+-- +.-..+|...-. ..+.+-+.+.+.+|-||.-.. ...+.||+++.+-=-.
T Consensus 251 q~Lyll~t~-g~s~~V~L~k~G---------PVhdv~W~~s~~EF~VvyGfM------------PAkvtifnlr~~~v~d 308 (566)
T KOG2315|consen 251 QTLYLLATQ-GESVSVPLLKEG---------PVHDVTWSPSGREFAVVYGFM------------PAKVTIFNLRGKPVFD 308 (566)
T ss_pred ceEEEEEec-CceEEEecCCCC---------CceEEEECCCCCEEEEEEecc------------cceEEEEcCCCCEeEe
Confidence 356666554 555555554321 222344556666676665332 5677788876653222
Q ss_pred ccCCCCeeeccCCcEEE--CceEEEEeecCCCCCceeEEEEEECCCcceeeeCCCCCcCCCCCceeEEEEE--CCcEEEE
Q 036467 189 INGGIPYHISSRAAVCF--NECLIWKASRGLGRGMTVLVVAFDMNREEFKEIHRPEYKDSHDKCQIEVGVF--RGEFAMF 264 (369)
Q Consensus 189 ~~~~~p~~~~~~~~v~~--~G~lyw~~~~~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~l~~~--~G~L~~~ 264 (369)
. |.+ ..+.+++ +|.+-.+++.+. .+-.|..+|+.+. ..|--+... ...+.++ +|.-.+.
T Consensus 309 f----~eg--pRN~~~fnp~g~ii~lAGFGN---L~G~mEvwDv~n~--K~i~~~~a~------~tt~~eW~PdGe~flT 371 (566)
T KOG2315|consen 309 F----PEG--PRNTAFFNPHGNIILLAGFGN---LPGDMEVWDVPNR--KLIAKFKAA------NTTVFEWSPDGEYFLT 371 (566)
T ss_pred C----CCC--CccceEECCCCCEEEEeecCC---CCCceEEEeccch--hhccccccC------CceEEEEcCCCcEEEE
Confidence 2 111 1222333 488888887764 2347899998873 233222222 2244555 4666666
Q ss_pred EecC-----CCeEEEEEe
Q 036467 265 HMWR-----EDRVEIWTM 277 (369)
Q Consensus 265 ~~~~-----~~~~~iW~l 277 (369)
.... ++.+.||-.
T Consensus 372 ATTaPRlrvdNg~Kiwhy 389 (566)
T KOG2315|consen 372 ATTAPRLRVDNGIKIWHY 389 (566)
T ss_pred EeccccEEecCCeEEEEe
Confidence 5543 356677753
No 105
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=49.04 E-value=1.8e+02 Score=25.15 Aligned_cols=109 Identities=14% Similarity=0.164 Sum_probs=53.7
Q ss_pred EEEEEECCCcce-eeeCCCC-CcCCCCCceeEEEE-ECCcEEEEEecCCCeEEEEEeccCCCCCCeeEEEEEcccccccc
Q 036467 224 LVVAFDMNREEF-KEIHRPE-YKDSHDKCQIEVGV-FRGEFAMFHMWREDRVEIWTMKDFGARESWTRMFVIGRRALINF 300 (369)
Q Consensus 224 ~il~fD~~~e~~-~~i~~P~-~~~~~~~~~~~l~~-~~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~ 300 (369)
.|..||+.+.+. ..+.... ...........+.. -+|+..++.......+.+|-++ +|.....+....
T Consensus 180 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~------~~~~~~~~~~~~---- 249 (300)
T TIGR03866 180 TVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAK------TYEVLDYLLVGQ---- 249 (300)
T ss_pred EEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECC------CCcEEEEEEeCC----
Confidence 788899987654 3232211 10000001112222 2466544443334467777554 255544432211
Q ss_pred cccccceeeeeEEeeeccCCCCCCeEEEEE-CCCeEEEEECCCCeE-EEeEEecCC
Q 036467 301 DNYAFVHLKPVCEMMNLSNGNGKNFLLIEK-GDGELILYDFENEIA-TDFKIQRAP 354 (369)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~ydl~~~~~-~~v~~~~~~ 354 (369)
....+.+ ..+ |..|+... .++.+..||+++++. +.+...+.+
T Consensus 250 ------~~~~~~~----~~~--g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~ 293 (300)
T TIGR03866 250 ------RVWQLAF----TPD--EKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRLP 293 (300)
T ss_pred ------CcceEEE----CCC--CCEEEEEcCCCCeEEEEECCCCcEEEEEEccccc
Confidence 1223444 445 24444432 356799999999994 777765444
No 106
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=49.00 E-value=2e+02 Score=25.87 Aligned_cols=32 Identities=16% Similarity=0.182 Sum_probs=27.6
Q ss_pred ceEEEEeecCCCCCceeEEEEEECCCcceeeeCCCCCc
Q 036467 207 ECLIWKASRGLGRGMTVLVVAFDMNREEFKEIHRPEYK 244 (369)
Q Consensus 207 G~lyw~~~~~~~~~~~~~il~fD~~~e~~~~i~~P~~~ 244 (369)
+.+||....+. .|+.+|+.+..-+.++.|...
T Consensus 37 ~~L~w~DI~~~------~i~r~~~~~g~~~~~~~p~~~ 68 (307)
T COG3386 37 GALLWVDILGG------RIHRLDPETGKKRVFPSPGGF 68 (307)
T ss_pred CEEEEEeCCCC------eEEEecCCcCceEEEECCCCc
Confidence 56899988764 899999999999999999876
No 107
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=46.47 E-value=2.2e+02 Score=25.54 Aligned_cols=145 Identities=8% Similarity=0.072 Sum_probs=0.0
Q ss_pred CCCcceEEEEEcCC-CceEEccCCCCeeeccCCc-EEECceEEEEeecCCCCCceeEEEEEECC-Ccceeee-CCCCCcC
Q 036467 170 DSYECEARVYSLAS-DKWKKINGGIPYHISSRAA-VCFNECLIWKASRGLGRGMTVLVVAFDMN-REEFKEI-HRPEYKD 245 (369)
Q Consensus 170 ~~~~~~~~vys~~t-~~W~~~~~~~p~~~~~~~~-v~~~G~lyw~~~~~~~~~~~~~il~fD~~-~e~~~~i-~~P~~~~ 245 (369)
......+.+|+..+ +.++.+ ...+..-..... +.-+|..-+.+..... .|.+|+++ +.+++.+ ..|...
T Consensus 8 ~~~~~~I~~~~~~~~g~l~~~-~~~~~~~~~~~l~~spd~~~lyv~~~~~~-----~i~~~~~~~~g~l~~~~~~~~~~- 80 (330)
T PRK11028 8 SPESQQIHVWNLNHEGALTLL-QVVDVPGQVQPMVISPDKRHLYVGVRPEF-----RVLSYRIADDGALTFAAESPLPG- 80 (330)
T ss_pred cCCCCCEEEEEECCCCceeee-eEEecCCCCccEEECCCCCEEEEEECCCC-----cEEEEEECCCCceEEeeeecCCC-
Q ss_pred CCCCceeEEEEEC-CcEEEEEecCCCeEEEEEeccCCCCCCeeEEEEEcccccccccccccceeeeeEEeeeccCCCCCC
Q 036467 246 SHDKCQIEVGVFR-GEFAMFHMWREDRVEIWTMKDFGARESWTRMFVIGRRALINFDNYAFVHLKPVCEMMNLSNGNGKN 324 (369)
Q Consensus 246 ~~~~~~~~l~~~~-G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (369)
....++... |+..++.......+.+|.+++ .+.....+..+..... ...+.+ ..+ |.
T Consensus 81 ----~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~--~g~~~~~~~~~~~~~~----------~~~~~~----~p~--g~ 138 (330)
T PRK11028 81 ----SPTHISTDHQGRFLFSASYNANCVSVSPLDK--DGIPVAPIQIIEGLEG----------CHSANI----DPD--NR 138 (330)
T ss_pred ----CceEEEECCCCCEEEEEEcCCCeEEEEEECC--CCCCCCceeeccCCCc----------ccEeEe----CCC--CC
Q ss_pred eEEEEECC-CeEEEEECCCC
Q 036467 325 FLLIEKGD-GELILYDFENE 343 (369)
Q Consensus 325 ~i~~~~~~-~~~~~ydl~~~ 343 (369)
.+++...+ +.+..||++++
T Consensus 139 ~l~v~~~~~~~v~v~d~~~~ 158 (330)
T PRK11028 139 TLWVPCLKEDRIRLFTLSDD 158 (330)
T ss_pred EEEEeeCCCCEEEEEEECCC
No 108
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=45.01 E-value=42 Score=32.06 Aligned_cols=134 Identities=11% Similarity=0.195 Sum_probs=73.4
Q ss_pred ccCCcEEECc--eEEEEeecCCCCCceeEEEEEECCCcceeeeCC----CCCcCCCCCceeEEEEECCcEEEEEecC---
Q 036467 198 SSRAAVCFNE--CLIWKASRGLGRGMTVLVVAFDMNREEFKEIHR----PEYKDSHDKCQIEVGVFRGEFAMFHMWR--- 268 (369)
Q Consensus 198 ~~~~~v~~~G--~lyw~~~~~~~~~~~~~il~fD~~~e~~~~i~~----P~~~~~~~~~~~~l~~~~G~L~~~~~~~--- 268 (369)
..++.|...| ++|-.++-++.. ...-.-+|++....|+.+.. |-... .....+-+++.+||+.+.+-
T Consensus 262 gGHQMV~~~~~~CiYLYGGWdG~~-~l~DFW~Y~v~e~~W~~iN~~t~~PG~Rs---CHRMVid~S~~KLYLlG~Y~~sS 337 (723)
T KOG2437|consen 262 GGHQMVIDVQTECVYLYGGWDGTQ-DLADFWAYSVKENQWTCINRDTEGPGARS---CHRMVIDISRRKLYLLGRYLDSS 337 (723)
T ss_pred CcceEEEeCCCcEEEEecCcccch-hHHHHHhhcCCcceeEEeecCCCCCcchh---hhhhhhhhhHhHHhhhhhccccc
Confidence 3456688888 888877654311 11235678888999999843 33221 11222233345788876531
Q ss_pred -----CCeEEEEEeccCCCCCCeeEEEEEcccccccccccccc--eeeeeEEeeeccCCCCCCeEEEEECC---------
Q 036467 269 -----EDRVEIWTMKDFGARESWTRMFVIGRRALINFDNYAFV--HLKPVCEMMNLSNGNGKNFLLIEKGD--------- 332 (369)
Q Consensus 269 -----~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~--------- 332 (369)
...-++|+++- .+..|..+.. +...- ++.. +-.-+++ ..+ ++-|++..+.
T Consensus 338 ~r~~~s~RsDfW~FDi--~~~~W~~ls~-dt~~d-----GGP~~vfDHqM~V----d~~--k~~iyVfGGr~~~~~e~~f 403 (723)
T KOG2437|consen 338 VRNSKSLRSDFWRFDI--DTNTWMLLSE-DTAAD-----GGPKLVFDHQMCV----DSE--KHMIYVFGGRILTCNEPQF 403 (723)
T ss_pred cccccccccceEEEec--CCceeEEecc-ccccc-----CCcceeecceeeE----ecC--cceEEEecCeeccCCCccc
Confidence 24668999985 4567987532 11100 1111 1122333 222 2445554311
Q ss_pred CeEEEEECCCCeEEEeE
Q 036467 333 GELILYDFENEIATDFK 349 (369)
Q Consensus 333 ~~~~~ydl~~~~~~~v~ 349 (369)
..+++||.+...|+...
T Consensus 404 ~GLYaf~~~~~~w~~l~ 420 (723)
T KOG2437|consen 404 SGLYAFNCQCQTWKLLR 420 (723)
T ss_pred cceEEEecCCccHHHHH
Confidence 24999999999987664
No 109
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.93 E-value=1.3e+02 Score=31.05 Aligned_cols=78 Identities=14% Similarity=0.355 Sum_probs=44.2
Q ss_pred eeEEEEECCcE-EEEEecCCCeEEEEEeccCCCCCCeeEEEEEcccccccccccccceeeeeEEeeeccCCCCCCeEEEE
Q 036467 251 QIEVGVFRGEF-AMFHMWREDRVEIWTMKDFGARESWTRMFVIGRRALINFDNYAFVHLKPVCEMMNLSNGNGKNFLLIE 329 (369)
Q Consensus 251 ~~~l~~~~G~L-~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 329 (369)
+..-+.+.+.| .++++.+++.+.+|.|.+ .+.|++--.-+... ..+.+-+ + +. ..+++.
T Consensus 208 GVNwaAfhpTlpliVSG~DDRqVKlWrmne---tKaWEvDtcrgH~n----------nVssvlf--h-p~----q~lIlS 267 (1202)
T KOG0292|consen 208 GVNWAAFHPTLPLIVSGADDRQVKLWRMNE---TKAWEVDTCRGHYN----------NVSSVLF--H-PH----QDLILS 267 (1202)
T ss_pred ccceEEecCCcceEEecCCcceeeEEEecc---ccceeehhhhcccC----------CcceEEe--c-Cc----cceeEe
Confidence 34445556544 334455678999999997 35698743322211 1222223 1 32 345555
Q ss_pred E-CCCeEEEEECCCCeE-EEe
Q 036467 330 K-GDGELILYDFENEIA-TDF 348 (369)
Q Consensus 330 ~-~~~~~~~ydl~~~~~-~~v 348 (369)
. .++.+-+||++.++- +.+
T Consensus 268 nsEDksirVwDm~kRt~v~tf 288 (1202)
T KOG0292|consen 268 NSEDKSIRVWDMTKRTSVQTF 288 (1202)
T ss_pred cCCCccEEEEecccccceeee
Confidence 4 455699999998874 443
No 110
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=43.20 E-value=65 Score=22.92 Aligned_cols=17 Identities=29% Similarity=0.386 Sum_probs=14.6
Q ss_pred CeEEEEECCCCeEEEeE
Q 036467 333 GELILYDFENEIATDFK 349 (369)
Q Consensus 333 ~~~~~ydl~~~~~~~v~ 349 (369)
++++.||++|++.+.+.
T Consensus 37 GRll~ydp~t~~~~vl~ 53 (89)
T PF03088_consen 37 GRLLRYDPSTKETTVLL 53 (89)
T ss_dssp EEEEEEETTTTEEEEEE
T ss_pred cCEEEEECCCCeEEEeh
Confidence 46999999999988774
No 111
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=43.06 E-value=2e+02 Score=24.02 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=14.2
Q ss_pred CeEEEEECCCeEEEEECCCCeE
Q 036467 324 NFLLIEKGDGELILYDFENEIA 345 (369)
Q Consensus 324 ~~i~~~~~~~~~~~ydl~~~~~ 345 (369)
..+++...++.+..||+++++.
T Consensus 190 ~~l~~~~~~~~i~i~d~~~~~~ 211 (289)
T cd00200 190 EKLLSSSSDGTIKLWDLSTGKC 211 (289)
T ss_pred CEEEEecCCCcEEEEECCCCce
Confidence 3555555556688888886544
No 112
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=41.90 E-value=2.7e+02 Score=25.33 Aligned_cols=153 Identities=13% Similarity=0.166 Sum_probs=76.9
Q ss_pred cceEEEEEcCCCc--eEEcc-CCCCeeeccCCc-EEECce-EEEEeecCCCCCceeEEEEEECC--Ccceeee----CCC
Q 036467 173 ECEARVYSLASDK--WKKIN-GGIPYHISSRAA-VCFNEC-LIWKASRGLGRGMTVLVVAFDMN--REEFKEI----HRP 241 (369)
Q Consensus 173 ~~~~~vys~~t~~--W~~~~-~~~p~~~~~~~~-v~~~G~-lyw~~~~~~~~~~~~~il~fD~~--~e~~~~i----~~P 241 (369)
...+.+|+...+. ..... ...|....+... +.-+|. +|.+..... .|.+|++. +..++.+ .+|
T Consensus 165 ~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~------~v~v~~~~~~~g~~~~~~~~~~~~ 238 (345)
T PF10282_consen 165 ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSN------TVSVFDYDPSDGSLTEIQTISTLP 238 (345)
T ss_dssp TTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTT------EEEEEEEETTTTEEEEEEEEESCE
T ss_pred CCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCC------cEEEEeecccCCceeEEEEeeecc
Confidence 4578888887654 53320 011111101011 222554 666655442 66666666 6666554 345
Q ss_pred CCcCCCCCceeEEEEE-CCcEEEEEecCCCeEEEEEeccCCCCCCeeEEEEEcccccccccccccceeeeeEEeeeccCC
Q 036467 242 EYKDSHDKCQIEVGVF-RGEFAMFHMWREDRVEIWTMKDFGARESWTRMFVIGRRALINFDNYAFVHLKPVCEMMNLSNG 320 (369)
Q Consensus 242 ~~~~~~~~~~~~l~~~-~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (369)
..... ......+... +|+...+.......+.++.++... ..-+++..++...- ..+-+.+ ..+
T Consensus 239 ~~~~~-~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~--g~l~~~~~~~~~G~---------~Pr~~~~----s~~ 302 (345)
T PF10282_consen 239 EGFTG-ENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPAT--GTLTLVQTVPTGGK---------FPRHFAF----SPD 302 (345)
T ss_dssp TTSCS-SSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTT--TTEEEEEEEEESSS---------SEEEEEE-----TT
T ss_pred ccccc-cCCceeEEEecCCCEEEEEeccCCEEEEEEEecCC--CceEEEEEEeCCCC---------CccEEEE----eCC
Confidence 43311 1123345555 577666666566789999996532 33555555543111 1233444 555
Q ss_pred CCCCeEEEEEC-CCeEEEE--ECCCCeEEEeE
Q 036467 321 NGKNFLLIEKG-DGELILY--DFENEIATDFK 349 (369)
Q Consensus 321 ~~~~~i~~~~~-~~~~~~y--dl~~~~~~~v~ 349 (369)
|..+++... ++.+..| |.++++++.+.
T Consensus 303 --g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 303 --GRYLYVANQDSNTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp --SSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred --CCEEEEEecCCCeEEEEEEeCCCCcEEEec
Confidence 345555443 3445555 67899998885
No 113
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=41.07 E-value=1.3e+02 Score=27.20 Aligned_cols=55 Identities=15% Similarity=0.192 Sum_probs=40.9
Q ss_pred CCcEEECceEEEEeecCCCCCceeEEEEEECCCcceeee-CCCCCcCCCCCceeEEEEECCcEEEEEecC
Q 036467 200 RAAVCFNECLIWKASRGLGRGMTVLVVAFDMNREEFKEI-HRPEYKDSHDKCQIEVGVFRGEFAMFHMWR 268 (369)
Q Consensus 200 ~~~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~e~~~~i-~~P~~~~~~~~~~~~l~~~~G~L~~~~~~~ 268 (369)
+.+-..+|.+|.+..... .+..+|++++++..+ .+|-.. .+ |+-. |.+.+++..+
T Consensus 206 hSPRWhdgrLwvldsgtG------ev~~vD~~~G~~e~Va~vpG~~-----rG--L~f~-G~llvVgmSk 261 (335)
T TIGR03032 206 HSPRWYQGKLWLLNSGRG------ELGYVDPQAGKFQPVAFLPGFT-----RG--LAFA-GDFAFVGLSK 261 (335)
T ss_pred cCCcEeCCeEEEEECCCC------EEEEEcCCCCcEEEEEECCCCC-----cc--ccee-CCEEEEEecc
Confidence 445788999999987653 899999999999888 777654 12 2222 8888888764
No 114
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=40.08 E-value=2.9e+02 Score=25.18 Aligned_cols=152 Identities=14% Similarity=0.107 Sum_probs=79.6
Q ss_pred cceEEEEEcCCCceEEccCCCCeeeccCCc-----EEECce-EEEEeecCCCCCceeEEEEEECCCcceeee----CCCC
Q 036467 173 ECEARVYSLASDKWKKINGGIPYHISSRAA-----VCFNEC-LIWKASRGLGRGMTVLVVAFDMNREEFKEI----HRPE 242 (369)
Q Consensus 173 ~~~~~vys~~t~~W~~~~~~~p~~~~~~~~-----v~~~G~-lyw~~~~~~~~~~~~~il~fD~~~e~~~~i----~~P~ 242 (369)
...+.+|++..+.-... .. .......+ ..-||+ +|.++.-.. ...++.||....++..+ -+|.
T Consensus 166 ~Dri~~y~~~dg~L~~~-~~--~~v~~G~GPRHi~FHpn~k~aY~v~EL~s----tV~v~~y~~~~g~~~~lQ~i~tlP~ 238 (346)
T COG2706 166 TDRIFLYDLDDGKLTPA-DP--AEVKPGAGPRHIVFHPNGKYAYLVNELNS----TVDVLEYNPAVGKFEELQTIDTLPE 238 (346)
T ss_pred CceEEEEEcccCccccc-cc--cccCCCCCcceEEEcCCCcEEEEEeccCC----EEEEEEEcCCCceEEEeeeeccCcc
Confidence 56788888887665444 11 11111111 233565 666665542 34556666666777766 4677
Q ss_pred CcCCCCCceeEEEE-ECCcEEEEEecCCCeEEEEEeccCCCCCCeeEEEEEcccccccccccccceeeeeEEeeeccCCC
Q 036467 243 YKDSHDKCQIEVGV-FRGEFAMFHMWREDRVEIWTMKDFGARESWTRMFVIGRRALINFDNYAFVHLKPVCEMMNLSNGN 321 (369)
Q Consensus 243 ~~~~~~~~~~~l~~-~~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (369)
+..... ....+-. -+|+...++-..-..|.+...++.++. =+.+...+.... ..+-+-+ ...
T Consensus 239 dF~g~~-~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~--L~~~~~~~teg~---------~PR~F~i----~~~- 301 (346)
T COG2706 239 DFTGTN-WAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGK--LELVGITPTEGQ---------FPRDFNI----NPS- 301 (346)
T ss_pred ccCCCC-ceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCE--EEEEEEeccCCc---------CCcccee----CCC-
Confidence 653222 2223333 358887777654446666666664432 222233332221 1233444 333
Q ss_pred CCCeEEEEECC--C--eEEEEECCCCeEEEeEE
Q 036467 322 GKNFLLIEKGD--G--ELILYDFENEIATDFKI 350 (369)
Q Consensus 322 ~~~~i~~~~~~--~--~~~~ydl~~~~~~~v~~ 350 (369)
|..++...+ . .++.-|.+|+++..+..
T Consensus 302 --g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~ 332 (346)
T COG2706 302 --GRFLIAANQKSDNITVFERDKETGRLTLLGR 332 (346)
T ss_pred --CCEEEEEccCCCcEEEEEEcCCCceEEeccc
Confidence 555555432 2 26777999999988854
No 115
>PRK05137 tolB translocation protein TolB; Provisional
Probab=39.98 E-value=3.3e+02 Score=25.73 Aligned_cols=191 Identities=10% Similarity=0.072 Sum_probs=91.3
Q ss_pred CCceEEEEcCCccceeeCCCCCCCCCCCcccceEEEEEeeeCCCCCeEEEEEEeeeCCCcccCCCCcceEEEEEcCCCce
Q 036467 107 CNEDIFLFNPSTKKYKKLPVPEFDVPTIETTCFTSLGFGYHQADDDYKVIRSIYLYDKPFVDIDSYECEARVYSLASDKW 186 (369)
Q Consensus 107 ~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~vys~~t~~W 186 (369)
....++++|+.|++...+...+.. .....+.|. ++.-++.... .....+.+++..++.-
T Consensus 224 g~~~i~~~dl~~g~~~~l~~~~g~----------~~~~~~SPD-G~~la~~~~~----------~g~~~Iy~~d~~~~~~ 282 (435)
T PRK05137 224 GRPRVYLLDLETGQRELVGNFPGM----------TFAPRFSPD-GRKVVMSLSQ----------GGNTDIYTMDLRSGTT 282 (435)
T ss_pred CCCEEEEEECCCCcEEEeecCCCc----------ccCcEECCC-CCEEEEEEec----------CCCceEEEEECCCCce
Confidence 346899999999988776543211 112223332 2222222221 1235567778878777
Q ss_pred EEccCCCCeeeccCCcEEECce-EEEEeecCCCCCceeEEEEEECCCcceeeeCCCCCcCCCCCceeEEEEECCcEEEEE
Q 036467 187 KKINGGIPYHISSRAAVCFNEC-LIWKASRGLGRGMTVLVVAFDMNREEFKEIHRPEYKDSHDKCQIEVGVFRGEFAMFH 265 (369)
Q Consensus 187 ~~~~~~~p~~~~~~~~v~~~G~-lyw~~~~~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~l~~~~G~L~~~~ 265 (369)
+.+ ...+. ........-||. +++...... ...|..+|++++..+.+...... ...+.. .-+|+..++.
T Consensus 283 ~~L-t~~~~-~~~~~~~spDG~~i~f~s~~~g----~~~Iy~~d~~g~~~~~lt~~~~~----~~~~~~-SpdG~~ia~~ 351 (435)
T PRK05137 283 TRL-TDSPA-IDTSPSYSPDGSQIVFESDRSG----SPQLYVMNADGSNPRRISFGGGR----YSTPVW-SPRGDLIAFT 351 (435)
T ss_pred EEc-cCCCC-ccCceeEcCCCCEEEEEECCCC----CCeEEEEECCCCCeEEeecCCCc----ccCeEE-CCCCCEEEEE
Confidence 666 32221 111111233454 444332221 13688889888777666322111 112222 1245443333
Q ss_pred ecCCCeEEEEEeccCCCCCCeeEEEEEcccccccccccccceeeeeEEeeeccCCCCCCeEEEEECC------CeEEEEE
Q 036467 266 MWREDRVEIWTMKDFGARESWTRMFVIGRRALINFDNYAFVHLKPVCEMMNLSNGNGKNFLLIEKGD------GELILYD 339 (369)
Q Consensus 266 ~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~------~~~~~yd 339 (369)
........||+++-.+ . ..+. +.... ......+ ..+ |..|++.... ..++.+|
T Consensus 352 ~~~~~~~~i~~~d~~~--~-~~~~--lt~~~----------~~~~p~~----spD--G~~i~~~~~~~~~~~~~~L~~~d 410 (435)
T PRK05137 352 KQGGGQFSIGVMKPDG--S-GERI--LTSGF----------LVEGPTW----APN--GRVIMFFRQTPGSGGAPKLYTVD 410 (435)
T ss_pred EcCCCceEEEEEECCC--C-ceEe--ccCCC----------CCCCCeE----CCC--CCEEEEEEccCCCCCcceEEEEE
Confidence 3333356777776422 1 1111 11100 0122234 444 4666665431 3599999
Q ss_pred CCCCeEEEeEE
Q 036467 340 FENEIATDFKI 350 (369)
Q Consensus 340 l~~~~~~~v~~ 350 (369)
+.++..+.+..
T Consensus 411 l~g~~~~~l~~ 421 (435)
T PRK05137 411 LTGRNEREVPT 421 (435)
T ss_pred CCCCceEEccC
Confidence 99888776653
No 116
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=38.86 E-value=4.5e+02 Score=27.01 Aligned_cols=105 Identities=14% Similarity=0.226 Sum_probs=61.6
Q ss_pred eEEEEEECCCcceee---eCCCCCcCCCCCceeEEEEEC--CcEEEEEecCCCeEEEEEeccCC----CCCCeeEEEEEc
Q 036467 223 VLVVAFDMNREEFKE---IHRPEYKDSHDKCQIEVGVFR--GEFAMFHMWREDRVEIWTMKDFG----ARESWTRMFVIG 293 (369)
Q Consensus 223 ~~il~fD~~~e~~~~---i~~P~~~~~~~~~~~~l~~~~--G~L~~~~~~~~~~~~iW~l~~~~----~~~~W~~~~~i~ 293 (369)
.+.-.||.....|.. |..|.+. .......++ -..-.+.......+.||+++++. ....|.....=.
T Consensus 432 LKFW~~n~~~kt~~L~T~I~~PH~~-----~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~s 506 (792)
T KOG1963|consen 432 LKFWQYNPNSKTFILNTKINNPHGN-----AFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGS 506 (792)
T ss_pred EEEEEEcCCcceeEEEEEEecCCCc-----eeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeec
Confidence 356677777777754 4777654 222222222 12122233345689999996542 335699876544
Q ss_pred ccccccccccccceeeeeEEeeeccCCCCCCeEEEEECCCeEEEEECCC-CeEEEe
Q 036467 294 RRALINFDNYAFVHLKPVCEMMNLSNGNGKNFLLIEKGDGELILYDFEN-EIATDF 348 (369)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ydl~~-~~~~~v 348 (369)
+... .....++ .++ |.++...-++.+-.||..+ +..+..
T Consensus 507 y~k~---------~i~a~~f----s~d---Gslla~s~~~~Itiwd~~~~~~l~~~ 546 (792)
T KOG1963|consen 507 YHKT---------PITALCF----SQD---GSLLAVSFDDTITIWDYDTKNELLCT 546 (792)
T ss_pred cccC---------cccchhh----cCC---CcEEEEecCCEEEEecCCChhhhhcc
Confidence 3222 1344566 666 7887777777799999998 444433
No 117
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=38.18 E-value=2.9e+02 Score=24.55 Aligned_cols=63 Identities=10% Similarity=0.236 Sum_probs=42.3
Q ss_pred CcceEEEEEcCCCceEEccCCCCe---ee--ccCCcEEECceEEEEeecCCCCCceeEEEEEECCCcceeeeCC
Q 036467 172 YECEARVYSLASDKWKKINGGIPY---HI--SSRAAVCFNECLIWKASRGLGRGMTVLVVAFDMNREEFKEIHR 240 (369)
Q Consensus 172 ~~~~~~vys~~t~~W~~~~~~~p~---~~--~~~~~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~e~~~~i~~ 240 (369)
.+..+.+|+..+.+|........- .+ .....+++.|.+-.-... ...+..||..+.+|+.+.-
T Consensus 14 ~C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~------~~~la~yd~~~~~w~~~~~ 81 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTN------SSNLATYDFKNQTWSSLGG 81 (281)
T ss_pred CCCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCC------ceeEEEEecCCCeeeecCC
Confidence 578899999999999988333221 11 122336666665544322 2489999999999988854
No 118
>PRK04043 tolB translocation protein TolB; Provisional
Probab=37.58 E-value=3.6e+02 Score=25.49 Aligned_cols=102 Identities=4% Similarity=0.058 Sum_probs=56.8
Q ss_pred EEEEEECCCcceeeeCCCCCcCCCCCceeEEEEECC-cEEEEEecCCCeEEEEEeccCCCCCCeeEEEEEcccccccccc
Q 036467 224 LVVAFDMNREEFKEIHRPEYKDSHDKCQIEVGVFRG-EFAMFHMWREDRVEIWTMKDFGARESWTRMFVIGRRALINFDN 302 (369)
Q Consensus 224 ~il~fD~~~e~~~~i~~P~~~~~~~~~~~~l~~~~G-~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~ 302 (369)
.|..+|+.+.+-..+--.... ..... ..-+| +|.+... ....-+||+++-.+ ..+..+...+. .
T Consensus 214 ~Iyv~dl~tg~~~~lt~~~g~----~~~~~-~SPDG~~la~~~~-~~g~~~Iy~~dl~~--g~~~~LT~~~~--~----- 278 (419)
T PRK04043 214 TLYKYNLYTGKKEKIASSQGM----LVVSD-VSKDGSKLLLTMA-PKGQPDIYLYDTNT--KTLTQITNYPG--I----- 278 (419)
T ss_pred EEEEEECCCCcEEEEecCCCc----EEeeE-ECCCCCEEEEEEc-cCCCcEEEEEECCC--CcEEEcccCCC--c-----
Confidence 789999998877666322211 01122 22256 4544443 34467899998532 33544322211 0
Q ss_pred cccceeeeeEEeeeccCCCCCCeEEEEECC---CeEEEEECCCCeEEEeEEe
Q 036467 303 YAFVHLKPVCEMMNLSNGNGKNFLLIEKGD---GELILYDFENEIATDFKIQ 351 (369)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~ydl~~~~~~~v~~~ 351 (369)
...| .+ ..+ |..|+|..+. ..++.+|+.+++.+++-..
T Consensus 279 ----d~~p-~~----SPD--G~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~ 319 (419)
T PRK04043 279 ----DVNG-NF----VED--DKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH 319 (419)
T ss_pred ----cCcc-EE----CCC--CCEEEEEECCCCCceEEEEECCCCCeEeCccC
Confidence 1223 24 445 4678887643 2599999999998777543
No 119
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=36.71 E-value=3.8e+02 Score=25.51 Aligned_cols=116 Identities=14% Similarity=0.207 Sum_probs=61.2
Q ss_pred EEECce-EEEEeecCCCCCceeEEEEEECCCcceeeeCCCCCcCCCCCceeEEEEECCcEEEEEecCCCeEEEEEeccCC
Q 036467 203 VCFNEC-LIWKASRGLGRGMTVLVVAFDMNREEFKEIHRPEYKDSHDKCQIEVGVFRGEFAMFHMWREDRVEIWTMKDFG 281 (369)
Q Consensus 203 v~~~G~-lyw~~~~~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~~iW~l~~~~ 281 (369)
..-+|. .-+.++.. -.+.+||+.+.+.+.+..|..........+. +.-.|...++.+... .|.+-...
T Consensus 265 f~p~G~~~i~~s~rr------ky~ysyDle~ak~~k~~~~~g~e~~~~e~Fe-VShd~~fia~~G~~G-~I~lLhak--- 333 (514)
T KOG2055|consen 265 FAPNGHSVIFTSGRR------KYLYSYDLETAKVTKLKPPYGVEEKSMERFE-VSHDSNFIAIAGNNG-HIHLLHAK--- 333 (514)
T ss_pred ecCCCceEEEecccc------eEEEEeeccccccccccCCCCcccchhheeE-ecCCCCeEEEcccCc-eEEeehhh---
Confidence 444666 44444443 3889999999999999888776421111111 112233333333211 22222111
Q ss_pred CCCCeeEEEEEcccccccccccccceeeeeEEeeeccCCCCCCeEEEEECCCeEEEEECCCCeEEEe
Q 036467 282 ARESWTRMFVIGRRALINFDNYAFVHLKPVCEMMNLSNGNGKNFLLIEKGDGELILYDFENEIATDF 348 (369)
Q Consensus 282 ~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ydl~~~~~~~v 348 (369)
...|.-.+.|+- ...-+.+ ..+ |..|+.+...+.++.+|++.+.....
T Consensus 334 -T~eli~s~KieG------------~v~~~~f----sSd--sk~l~~~~~~GeV~v~nl~~~~~~~r 381 (514)
T KOG2055|consen 334 -TKELITSFKIEG------------VVSDFTF----SSD--SKELLASGGTGEVYVWNLRQNSCLHR 381 (514)
T ss_pred -hhhhhheeeecc------------EEeeEEE----ecC--CcEEEEEcCCceEEEEecCCcceEEE
Confidence 123444444432 1344555 445 34555555556799999999976444
No 120
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=36.14 E-value=1.8e+02 Score=28.72 Aligned_cols=54 Identities=17% Similarity=0.321 Sum_probs=38.6
Q ss_pred EEEEEECCCcceee----eCCCCCcCCCCCceeEEEEECCcEEEEEecCCCeEEEEEeccC
Q 036467 224 LVVAFDMNREEFKE----IHRPEYKDSHDKCQIEVGVFRGEFAMFHMWREDRVEIWTMKDF 280 (369)
Q Consensus 224 ~il~fD~~~e~~~~----i~~P~~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~~iW~l~~~ 280 (369)
.|..||.....|.. +.-|.. +....+.+.-..|..+++....+.++..|.++..
T Consensus 75 ~i~l~dt~~~~fr~ee~~lk~~~a---H~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s 132 (720)
T KOG0321|consen 75 GIILFDTKSIVFRLEERQLKKPLA---HKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTS 132 (720)
T ss_pred ceeeecchhhhcchhhhhhccccc---ccceeEeeccCCCceeEEEccCCceeeeeeeccc
Confidence 89999999988871 222332 2234455666669999999887889999999863
No 121
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=35.99 E-value=2.7e+02 Score=27.17 Aligned_cols=111 Identities=16% Similarity=0.211 Sum_probs=59.2
Q ss_pred eecccEEEeeccCCceEEEEcCCccceeeCCCCCCCCCCCcccceEEEEEeeeCCCCCeEEEEEEeeeCCCcccCCCCcc
Q 036467 95 SCNGLLCISDQSCNEDIFLFNPSTKKYKKLPVPEFDVPTIETTCFTSLGFGYHQADDDYKVIRSIYLYDKPFVDIDSYEC 174 (369)
Q Consensus 95 s~~GLl~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~ 174 (369)
..+|-++++.. .+.++.||||..++. |-.+...... ..+..-|-|-+++=.|+.-. ...
T Consensus 59 n~dG~lL~SGS-DD~r~ivWd~~~~Kl--lhsI~TgHta------NIFsvKFvP~tnnriv~sgA------------gDk 117 (758)
T KOG1310|consen 59 NADGELLASGS-DDTRLIVWDPFEYKL--LHSISTGHTA------NIFSVKFVPYTNNRIVLSGA------------GDK 117 (758)
T ss_pred cCCCCEEeecC-CcceEEeecchhcce--eeeeeccccc------ceeEEeeeccCCCeEEEecc------------Ccc
Confidence 45676666653 677899999994443 3333322221 22333344656655555432 356
Q ss_pred eEEEEEcCCCceEEccCCCCee--ecc---CC----cEEECc-eEEEEeecCCCCCceeEEEEEECCC
Q 036467 175 EARVYSLASDKWKKINGGIPYH--ISS---RA----AVCFNE-CLIWKASRGLGRGMTVLVVAFDMNR 232 (369)
Q Consensus 175 ~~~vys~~t~~W~~~~~~~p~~--~~~---~~----~v~~~G-~lyw~~~~~~~~~~~~~il~fD~~~ 232 (369)
.+.+|++..-+=+..+..+-.. ... .+ .+.-+| ..+|.+.+++ .|.-+|+..
T Consensus 118 ~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDG------tirQyDiRE 179 (758)
T KOG1310|consen 118 LIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDG------TIRQYDIRE 179 (758)
T ss_pred eEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCc------ceeeecccC
Confidence 7788877643222221111111 100 00 133455 6899998774 788899875
No 122
>PRK04792 tolB translocation protein TolB; Provisional
Probab=35.08 E-value=4.1e+02 Score=25.35 Aligned_cols=191 Identities=9% Similarity=0.027 Sum_probs=93.9
Q ss_pred CCceEEEEcCCccceeeCCCCCCCCCCCcccceEEEEEeeeCCCCCeEEEEEEeeeCCCcccCCCCcceEEEEEcCCCce
Q 036467 107 CNEDIFLFNPSTKKYKKLPVPEFDVPTIETTCFTSLGFGYHQADDDYKVIRSIYLYDKPFVDIDSYECEARVYSLASDKW 186 (369)
Q Consensus 107 ~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~vys~~t~~W 186 (369)
...+++++|..|++...+...+.. .. ...+.|. +++-++.... +....+.+++..++..
T Consensus 240 g~~~L~~~dl~tg~~~~lt~~~g~--------~~--~~~wSPD-G~~La~~~~~----------~g~~~Iy~~dl~tg~~ 298 (448)
T PRK04792 240 RKAEIFVQDIYTQVREKVTSFPGI--------NG--APRFSPD-GKKLALVLSK----------DGQPEIYVVDIATKAL 298 (448)
T ss_pred CCcEEEEEECCCCCeEEecCCCCC--------cC--CeeECCC-CCEEEEEEeC----------CCCeEEEEEECCCCCe
Confidence 345799999999887766543211 01 2233443 2332222221 1245677788888888
Q ss_pred EEccCCCCeeeccCCcEEECce-EEEEeecCCCCCceeEEEEEECCCcceeeeCCCCCcCCCCCceeEEEEECCcEEEEE
Q 036467 187 KKINGGIPYHISSRAAVCFNEC-LIWKASRGLGRGMTVLVVAFDMNREEFKEIHRPEYKDSHDKCQIEVGVFRGEFAMFH 265 (369)
Q Consensus 187 ~~~~~~~p~~~~~~~~v~~~G~-lyw~~~~~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~l~~~~G~L~~~~ 265 (369)
+.+ ..... ........-||. +++...... ...|..+|+.+.+...+...... ...... .-+|+..++.
T Consensus 299 ~~l-t~~~~-~~~~p~wSpDG~~I~f~s~~~g----~~~Iy~~dl~~g~~~~Lt~~g~~----~~~~~~-SpDG~~l~~~ 367 (448)
T PRK04792 299 TRI-TRHRA-IDTEPSWHPDGKSLIFTSERGG----KPQIYRVNLASGKVSRLTFEGEQ----NLGGSI-TPDGRSMIMV 367 (448)
T ss_pred EEC-ccCCC-CccceEECCCCCEEEEEECCCC----CceEEEEECCCCCEEEEecCCCC----CcCeeE-CCCCCEEEEE
Confidence 777 32111 001111223454 544443222 13788999998887776322111 112222 2245444443
Q ss_pred ecCCCeEEEEEeccCCCCCCeeEEEEEcccccccccccccceeeeeEEeeeccCCCCCCeEEEEECC---CeEEEEECCC
Q 036467 266 MWREDRVEIWTMKDFGARESWTRMFVIGRRALINFDNYAFVHLKPVCEMMNLSNGNGKNFLLIEKGD---GELILYDFEN 342 (369)
Q Consensus 266 ~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~ydl~~ 342 (369)
.......+||+++-.+ .....+ ..... ...| .+ ..+ |..|++.... ..++.+|...
T Consensus 368 ~~~~g~~~I~~~dl~~--g~~~~l---t~~~~---------d~~p-s~----spd--G~~I~~~~~~~g~~~l~~~~~~G 426 (448)
T PRK04792 368 NRTNGKFNIARQDLET--GAMQVL---TSTRL---------DESP-SV----APN--GTMVIYSTTYQGKQVLAAVSIDG 426 (448)
T ss_pred EecCCceEEEEEECCC--CCeEEc---cCCCC---------CCCc-eE----CCC--CCEEEEEEecCCceEEEEEECCC
Confidence 3334567899887422 222221 11111 1233 34 444 4667665432 2377888876
Q ss_pred CeEEEeEE
Q 036467 343 EIATDFKI 350 (369)
Q Consensus 343 ~~~~~v~~ 350 (369)
+..+.+..
T Consensus 427 ~~~~~l~~ 434 (448)
T PRK04792 427 RFKARLPA 434 (448)
T ss_pred CceEECcC
Confidence 66666643
No 123
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=32.79 E-value=18 Score=31.33 Aligned_cols=36 Identities=19% Similarity=0.373 Sum_probs=27.8
Q ss_pred CCcHHHHHHHhccCC-ccccceeeecccchhcccCCh
Q 036467 1 NLPTDIITDIFTRLP-VKSLIRFKCVSKSMYALVHNK 36 (369)
Q Consensus 1 ~LP~Dll~eIL~rLp-~~~l~r~r~VcK~W~~li~~~ 36 (369)
+||.+++.+||.||| -.+|..+..|--.-..++.+.
T Consensus 204 dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~ 240 (332)
T KOG3926|consen 204 DLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEER 240 (332)
T ss_pred cchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHH
Confidence 699999999999999 778888887755544444433
No 124
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=32.77 E-value=3.3e+02 Score=23.54 Aligned_cols=112 Identities=13% Similarity=0.194 Sum_probs=63.4
Q ss_pred ceEEEEEcCC-CceEEccCCCC-eeeccCCcE--EECceEEEEeecCCCCCceeEEEEEECC-Ccceeee---CCCCCcC
Q 036467 174 CEARVYSLAS-DKWKKINGGIP-YHISSRAAV--CFNECLIWKASRGLGRGMTVLVVAFDMN-REEFKEI---HRPEYKD 245 (369)
Q Consensus 174 ~~~~vys~~t-~~W~~~~~~~p-~~~~~~~~v--~~~G~lyw~~~~~~~~~~~~~il~fD~~-~e~~~~i---~~P~~~~ 245 (369)
..+..||... .+|... ...+ ........+ .-+|.+|.+.... ... ...++.-.+ .++|+.. .+|...
T Consensus 134 ~~~~~~S~D~G~tW~~~-~~~~~~~~~~e~~~~~~~dG~l~~~~R~~-~~~--~~~~~~S~D~G~TWs~~~~~~~~~~~- 208 (275)
T PF13088_consen 134 SAFVYYSDDGGKTWSSG-SPIPDGQGECEPSIVELPDGRLLAVFRTE-GND--DIYISRSTDGGRTWSPPQPTNLPNPN- 208 (275)
T ss_dssp EEEEEEESSTTSSEEEE-EECECSEEEEEEEEEEETTSEEEEEEEEC-SST--EEEEEEESSTTSS-EEEEEEECSSCC-
T ss_pred ceEEEEeCCCCceeecc-ccccccCCcceeEEEECCCCcEEEEEEcc-CCC--cEEEEEECCCCCcCCCceecccCccc-
Confidence 3344455554 479877 3322 111111222 3578999888763 111 344555555 4588864 444432
Q ss_pred CCCCceeEEEEE-CCcEEEEEec--CCCeEEEEEeccCCCCCCeeEEEEEcccc
Q 036467 246 SHDKCQIEVGVF-RGEFAMFHMW--REDRVEIWTMKDFGARESWTRMFVIGRRA 296 (369)
Q Consensus 246 ~~~~~~~~l~~~-~G~L~~~~~~--~~~~~~iW~l~~~~~~~~W~~~~~i~~~~ 296 (369)
....++.. +|+++++... ....+.|+.-++ .+.+|.....|....
T Consensus 209 ----~~~~~~~~~~g~~~~~~~~~~~r~~l~l~~S~D--~g~tW~~~~~i~~~~ 256 (275)
T PF13088_consen 209 ----SSISLVRLSDGRLLLVYNNPDGRSNLSLYVSED--GGKTWSRPKTIDDGP 256 (275)
T ss_dssp ----EEEEEEECTTSEEEEEEECSSTSEEEEEEEECT--TCEEEEEEEEEEEEE
T ss_pred ----CCceEEEcCCCCEEEEEECCCCCCceEEEEEeC--CCCcCCccEEEeCCC
Confidence 34455554 4888888874 235778877766 357899988887644
No 125
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=32.69 E-value=3.3e+02 Score=26.79 Aligned_cols=33 Identities=18% Similarity=0.188 Sum_probs=26.2
Q ss_pred eEEEeeecccEEEeeccCCceEEEEcCCccceeeC
Q 036467 90 VEISGSCNGLLCISDQSCNEDIFLFNPSTKKYKKL 124 (369)
Q Consensus 90 ~~~~~s~~GLl~~~~~~~~~~~~V~NP~T~~~~~L 124 (369)
..-+..+||||++.. ..+.+-.|+|-+++....
T Consensus 180 ~v~in~~hgLla~Gt--~~g~VEfwDpR~ksrv~~ 212 (703)
T KOG2321|consen 180 VVSINEEHGLLACGT--EDGVVEFWDPRDKSRVGT 212 (703)
T ss_pred eeeecCccceEEecc--cCceEEEecchhhhhhee
Confidence 334568999998776 578999999999887653
No 126
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=31.40 E-value=3.4e+02 Score=23.30 Aligned_cols=188 Identities=12% Similarity=0.024 Sum_probs=84.0
Q ss_pred CCceEEEEcCCccceee-CCCCCCCCCCCcccceEEEEEeeeCCCCCeEEEEEEeeeCCCcccCCCCcceEEEEEcCCCc
Q 036467 107 CNEDIFLFNPSTKKYKK-LPVPEFDVPTIETTCFTSLGFGYHQADDDYKVIRSIYLYDKPFVDIDSYECEARVYSLASDK 185 (369)
Q Consensus 107 ~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~vys~~t~~ 185 (369)
..+.+.++|+.+++... ++... .. ..+.+++..+ +++.... ....+.+|+..+..
T Consensus 51 ~~~~v~~~d~~~~~~~~~~~~~~---------~~--~~~~~~~~g~--~l~~~~~-----------~~~~l~~~d~~~~~ 106 (300)
T TIGR03866 51 DSDTIQVIDLATGEVIGTLPSGP---------DP--ELFALHPNGK--ILYIANE-----------DDNLVTVIDIETRK 106 (300)
T ss_pred CCCeEEEEECCCCcEEEeccCCC---------Cc--cEEEECCCCC--EEEEEcC-----------CCCeEEEEECCCCe
Confidence 46789999999877654 43321 11 1344454332 2222111 12467888887653
Q ss_pred e-EEccCCCCeeeccCC-cEEECceEEEEeecCCCCCceeEEEEEECCCcceee-eCCCCCcCCCCCceeEEEEECCcEE
Q 036467 186 W-KKINGGIPYHISSRA-AVCFNECLIWKASRGLGRGMTVLVVAFDMNREEFKE-IHRPEYKDSHDKCQIEVGVFRGEFA 262 (369)
Q Consensus 186 W-~~~~~~~p~~~~~~~-~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~e~~~~-i~~P~~~~~~~~~~~~l~~~~G~L~ 262 (369)
= ..+ +....... .+.-+|.+.+.+.... ..+..+|..+.+... +..+.. ..... ..-+|+..
T Consensus 107 ~~~~~----~~~~~~~~~~~~~dg~~l~~~~~~~-----~~~~~~d~~~~~~~~~~~~~~~-----~~~~~-~s~dg~~l 171 (300)
T TIGR03866 107 VLAEI----PVGVEPEGMAVSPDGKIVVNTSETT-----NMAHFIDTKTYEIVDNVLVDQR-----PRFAE-FTADGKEL 171 (300)
T ss_pred EEeEe----eCCCCcceEEECCCCCEEEEEecCC-----CeEEEEeCCCCeEEEEEEcCCC-----ccEEE-ECCCCCEE
Confidence 2 222 11100111 1233566665554431 145667877654422 221111 11111 12246655
Q ss_pred EEEecCCCeEEEEEeccCCCCCCeeEEEEEcccccccccccccceeeeeEEeeeccCCCCCCeEEEEE-CCCeEEEEECC
Q 036467 263 MFHMWREDRVEIWTMKDFGARESWTRMFVIGRRALINFDNYAFVHLKPVCEMMNLSNGNGKNFLLIEK-GDGELILYDFE 341 (369)
Q Consensus 263 ~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~ydl~ 341 (369)
++.......+.+|-++. ...+.++...... .......+.++.. ..+ |..+++.. .+..+..||++
T Consensus 172 ~~~~~~~~~v~i~d~~~------~~~~~~~~~~~~~----~~~~~~~~~~i~~--s~d--g~~~~~~~~~~~~i~v~d~~ 237 (300)
T TIGR03866 172 WVSSEIGGTVSVIDVAT------RKVIKKITFEIPG----VHPEAVQPVGIKL--TKD--GKTAFVALGPANRVAVVDAK 237 (300)
T ss_pred EEEcCCCCEEEEEEcCc------ceeeeeeeecccc----cccccCCccceEE--CCC--CCEEEEEcCCCCeEEEEECC
Confidence 55444456788887764 1222233221100 0000112222211 444 24444433 34459999998
Q ss_pred CCeEEE
Q 036467 342 NEIATD 347 (369)
Q Consensus 342 ~~~~~~ 347 (369)
+.+...
T Consensus 238 ~~~~~~ 243 (300)
T TIGR03866 238 TYEVLD 243 (300)
T ss_pred CCcEEE
Confidence 877654
No 127
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=30.57 E-value=4.5e+02 Score=24.54 Aligned_cols=104 Identities=13% Similarity=0.142 Sum_probs=46.6
Q ss_pred eeEEEEEECCCcceeee-CCCCCcCCCCCceeEEEEECCcEEEEEecCC-C--eEEEEEeccCCCCCCeeEEEEEccccc
Q 036467 222 TVLVVAFDMNREEFKEI-HRPEYKDSHDKCQIEVGVFRGEFAMFHMWRE-D--RVEIWTMKDFGARESWTRMFVIGRRAL 297 (369)
Q Consensus 222 ~~~il~fD~~~e~~~~i-~~P~~~~~~~~~~~~l~~~~G~L~~~~~~~~-~--~~~iW~l~~~~~~~~W~~~~~i~~~~~ 297 (369)
.+.|+..|+.+.+...+ .-.... ..+...-.+..+.+++.... . .-+||.++..+. ..|....+.+...
T Consensus 167 ~~~i~~idl~tG~~~~v~~~~~wl-----gH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~-~~~~v~~~~~~e~- 239 (386)
T PF14583_consen 167 HCRIFTIDLKTGERKVVFEDTDWL-----GHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGS-NVKKVHRRMEGES- 239 (386)
T ss_dssp -EEEEEEETTT--EEEEEEESS-E-----EEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS----EESS---TTEE-
T ss_pred CceEEEEECCCCceeEEEecCccc-----cCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCC-cceeeecCCCCcc-
Confidence 47899999999988777 322221 11122222345555554321 2 236899997654 3344433322111
Q ss_pred ccccccccceeeeeEEeeeccCCCCCCeEEEEE--CCC---eEEEEECCCCeEEEe
Q 036467 298 INFDNYAFVHLKPVCEMMNLSNGNGKNFLLIEK--GDG---ELILYDFENEIATDF 348 (369)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~---~~~~ydl~~~~~~~v 348 (369)
....+.. . + |..|++.. .++ -++.||++|..-+.+
T Consensus 240 ---------~gHEfw~----~-D--G~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~ 279 (386)
T PF14583_consen 240 ---------VGHEFWV----P-D--GSTIWYDSYTPGGQDFWIAGYDPDTGERRRL 279 (386)
T ss_dssp ---------EEEEEE-----T-T--SS-EEEEEEETTT--EEEEEE-TTT--EEEE
T ss_pred ---------ccccccc----C-C--CCEEEEEeecCCCCceEEEeeCCCCCCceEE
Confidence 1223333 3 3 35666643 222 389999999876665
No 128
>PF15408 PH_7: Pleckstrin homology domain
Probab=29.86 E-value=11 Score=26.30 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=19.8
Q ss_pred ccccceeeecccchhcccCChhhH
Q 036467 16 VKSLIRFKCVSKSMYALVHNKIFI 39 (369)
Q Consensus 16 ~~~l~r~r~VcK~W~~li~~~~F~ 39 (369)
.+.++..+-|||+|-....+|.|.
T Consensus 76 ~~~FA~S~~~~~~Wi~~mN~~s~~ 99 (104)
T PF15408_consen 76 VQCFASSKKVCQSWIQVMNSPSFR 99 (104)
T ss_pred hhhhhhHHHHHHHHHHHhcChhhh
Confidence 345667788999999999999985
No 129
>PRK00178 tolB translocation protein TolB; Provisional
Probab=29.78 E-value=4.7e+02 Score=24.51 Aligned_cols=189 Identities=13% Similarity=0.094 Sum_probs=92.0
Q ss_pred CceEEEEcCCccceeeCCCCCCCCCCCcccceEEEEEeeeCCCCCeEEEEEEeeeCCCcccCCCCcceEEEEEcCCCceE
Q 036467 108 NEDIFLFNPSTKKYKKLPVPEFDVPTIETTCFTSLGFGYHQADDDYKVIRSIYLYDKPFVDIDSYECEARVYSLASDKWK 187 (369)
Q Consensus 108 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~vys~~t~~W~ 187 (369)
..+++++|..|++...+...+.. .. ...+.|. +++-++.... .....+.+++..++..+
T Consensus 222 ~~~l~~~~l~~g~~~~l~~~~g~--------~~--~~~~SpD-G~~la~~~~~----------~g~~~Iy~~d~~~~~~~ 280 (430)
T PRK00178 222 RPRIFVQNLDTGRREQITNFEGL--------NG--APAWSPD-GSKLAFVLSK----------DGNPEIYVMDLASRQLS 280 (430)
T ss_pred CCEEEEEECCCCCEEEccCCCCC--------cC--CeEECCC-CCEEEEEEcc----------CCCceEEEEECCCCCeE
Confidence 35789999999988877644311 01 1223332 2333333222 12356788898888887
Q ss_pred EccCCCCeeeccCCcEEECce-EEEEeecCCCCCceeEEEEEECCCcceeeeCCCCCcCCCCCceeEEEEECCcEEEEEe
Q 036467 188 KINGGIPYHISSRAAVCFNEC-LIWKASRGLGRGMTVLVVAFDMNREEFKEIHRPEYKDSHDKCQIEVGVFRGEFAMFHM 266 (369)
Q Consensus 188 ~~~~~~p~~~~~~~~v~~~G~-lyw~~~~~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~l~~~~G~L~~~~~ 266 (369)
.+ ...+. ........-+|. +++...... ...|..+|+.+.+...+...... .....+. -+|+..++..
T Consensus 281 ~l-t~~~~-~~~~~~~spDg~~i~f~s~~~g----~~~iy~~d~~~g~~~~lt~~~~~----~~~~~~S-pdg~~i~~~~ 349 (430)
T PRK00178 281 RV-TNHPA-IDTEPFWGKDGRTLYFTSDRGG----KPQIYKVNVNGGRAERVTFVGNY----NARPRLS-ADGKTLVMVH 349 (430)
T ss_pred Ec-ccCCC-CcCCeEECCCCCEEEEEECCCC----CceEEEEECCCCCEEEeecCCCC----ccceEEC-CCCCEEEEEE
Confidence 77 32211 111111222453 555543321 13788889988877666422111 1112222 2444433333
Q ss_pred cCCCeEEEEEeccCCCCCCeeEEEEEcccccccccccccceeeeeEEeeeccCCCCCCeEEEEECC---CeEEEEECCCC
Q 036467 267 WREDRVEIWTMKDFGARESWTRMFVIGRRALINFDNYAFVHLKPVCEMMNLSNGNGKNFLLIEKGD---GELILYDFENE 343 (369)
Q Consensus 267 ~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~ydl~~~ 343 (369)
.......||+++-.+ .....+ ..... ...| .+ ..+ |..|++.... ..++..++.++
T Consensus 350 ~~~~~~~l~~~dl~t--g~~~~l---t~~~~---------~~~p-~~----spd--g~~i~~~~~~~g~~~l~~~~~~g~ 408 (430)
T PRK00178 350 RQDGNFHVAAQDLQR--GSVRIL---TDTSL---------DESP-SV----APN--GTMLIYATRQQGRGVLMLVSINGR 408 (430)
T ss_pred ccCCceEEEEEECCC--CCEEEc---cCCCC---------CCCc-eE----CCC--CCEEEEEEecCCceEEEEEECCCC
Confidence 233356777776422 223222 11111 1233 34 444 4666665532 24888888776
Q ss_pred eEEEeE
Q 036467 344 IATDFK 349 (369)
Q Consensus 344 ~~~~v~ 349 (369)
..+.+.
T Consensus 409 ~~~~l~ 414 (430)
T PRK00178 409 VRLPLP 414 (430)
T ss_pred ceEECc
Confidence 665554
No 130
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=29.41 E-value=5.7e+02 Score=25.28 Aligned_cols=118 Identities=14% Similarity=0.160 Sum_probs=56.2
Q ss_pred ceEEEEeecCCCCCceeEEEEEECCCcceee-eCCCCCcCCCCCceeEEEEECCcEEEEEecCCCeEEEEEeccCCCCCC
Q 036467 207 ECLIWKASRGLGRGMTVLVVAFDMNREEFKE-IHRPEYKDSHDKCQIEVGVFRGEFAMFHMWREDRVEIWTMKDFGARES 285 (369)
Q Consensus 207 G~lyw~~~~~~~~~~~~~il~fD~~~e~~~~-i~~P~~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~~iW~l~~~~~~~~ 285 (369)
--||..+... .|..||++-++|-. +..-... ...+.+.+++|-|+ +++ ....++.|-.-+-.
T Consensus 146 cDly~~gsg~-------evYRlNLEqGrfL~P~~~~~~~----lN~v~in~~hgLla-~Gt-~~g~VEfwDpR~ks---- 208 (703)
T KOG2321|consen 146 CDLYLVGSGS-------EVYRLNLEQGRFLNPFETDSGE----LNVVSINEEHGLLA-CGT-EDGVVEFWDPRDKS---- 208 (703)
T ss_pred ccEEEeecCc-------ceEEEEcccccccccccccccc----ceeeeecCccceEE-ecc-cCceEEEecchhhh----
Confidence 3466666554 78999999999832 2222111 12334444445333 333 35588888765411
Q ss_pred eeEEEEEcccccccccccccce--eeeeEEeeeccCCCCCCeEEEEECCCeEEEEECCCCeEEEeE
Q 036467 286 WTRMFVIGRRALINFDNYAFVH--LKPVCEMMNLSNGNGKNFLLIEKGDGELILYDFENEIATDFK 349 (369)
Q Consensus 286 W~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ydl~~~~~~~v~ 349 (369)
.+.++....-.....+.... ...+.| .++ |-.+=+-+..+.+++||+++.+=-.+.
T Consensus 209 --rv~~l~~~~~v~s~pg~~~~~svTal~F----~d~--gL~~aVGts~G~v~iyDLRa~~pl~~k 266 (703)
T KOG2321|consen 209 --RVGTLDAASSVNSHPGGDAAPSVTALKF----RDD--GLHVAVGTSTGSVLIYDLRASKPLLVK 266 (703)
T ss_pred --hheeeecccccCCCccccccCcceEEEe----cCC--ceeEEeeccCCcEEEEEcccCCceeec
Confidence 12222221110000011112 233344 443 222333334456999999988755443
No 131
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=29.19 E-value=1.9e+02 Score=24.93 Aligned_cols=55 Identities=20% Similarity=0.323 Sum_probs=38.5
Q ss_pred eecccEEEeeccCCceEEEEcCCccceeeC--CCCCCCCCCCcccceEEEEEeeeCCCCCeEEEE
Q 036467 95 SCNGLLCISDQSCNEDIFLFNPSTKKYKKL--PVPEFDVPTIETTCFTSLGFGYHQADDDYKVIR 157 (369)
Q Consensus 95 s~~GLl~~~~~~~~~~~~V~NP~T~~~~~L--P~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~ 157 (369)
..+|.|..-. ...++|..||.|+.--.+ .+..... ....+++.|+|..+.-+||.
T Consensus 36 pa~G~LYgl~--~~g~lYtIn~~tG~aT~vg~s~~~~al------~g~~~gvDFNP~aDRlRvvs 92 (236)
T PF14339_consen 36 PANGQLYGLG--STGRLYTINPATGAATPVGASPLTVAL------SGTAFGVDFNPAADRLRVVS 92 (236)
T ss_pred cCCCCEEEEe--CCCcEEEEECCCCeEEEeecccccccc------cCceEEEecCcccCcEEEEc
Confidence 5567775444 578999999999997777 3333222 22467888889888777775
No 132
>PRK04043 tolB translocation protein TolB; Provisional
Probab=29.15 E-value=5e+02 Score=24.55 Aligned_cols=188 Identities=10% Similarity=0.056 Sum_probs=98.9
Q ss_pred CceEEEEcCCccceeeCCCCCCCCCCCcccceEEEEEeeeCCCCCeEEEEEEeeeCCCcccCCCCcceEEEEEcCCCceE
Q 036467 108 NEDIFLFNPSTKKYKKLPVPEFDVPTIETTCFTSLGFGYHQADDDYKVIRSIYLYDKPFVDIDSYECEARVYSLASDKWK 187 (369)
Q Consensus 108 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~vys~~t~~W~ 187 (369)
..++++.|..|++...|-..+. .... ..+.| .+...++.... .....+.+++..++.++
T Consensus 212 ~~~Iyv~dl~tg~~~~lt~~~g--------~~~~--~~~SP-DG~~la~~~~~----------~g~~~Iy~~dl~~g~~~ 270 (419)
T PRK04043 212 KPTLYKYNLYTGKKEKIASSQG--------MLVV--SDVSK-DGSKLLLTMAP----------KGQPDIYLYDTNTKTLT 270 (419)
T ss_pred CCEEEEEECCCCcEEEEecCCC--------cEEe--eEECC-CCCEEEEEEcc----------CCCcEEEEEECCCCcEE
Confidence 4689999999999888754321 1111 12333 23333333322 23467888888889998
Q ss_pred EccCCCCeeeccCCcEEECc-eEEEEeecCCCCCceeEEEEEECCCcceeeeCCCCCcCCCCCceeEEEEECCc-EEEEE
Q 036467 188 KINGGIPYHISSRAAVCFNE-CLIWKASRGLGRGMTVLVVAFDMNREEFKEIHRPEYKDSHDKCQIEVGVFRGE-FAMFH 265 (369)
Q Consensus 188 ~~~~~~p~~~~~~~~v~~~G-~lyw~~~~~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~l~~~~G~-L~~~~ 265 (369)
.+ ...+. ........-|| .+|+....... ..|...|+.+.+...+-.- .. .... ..-+|+ |.++.
T Consensus 271 ~L-T~~~~-~d~~p~~SPDG~~I~F~Sdr~g~----~~Iy~~dl~~g~~~rlt~~-g~-----~~~~-~SPDG~~Ia~~~ 337 (419)
T PRK04043 271 QI-TNYPG-IDVNGNFVEDDKRIVFVSDRLGY----PNIFMKKLNSGSVEQVVFH-GK-----NNSS-VSTYKNYIVYSS 337 (419)
T ss_pred Ec-ccCCC-ccCccEECCCCCEEEEEECCCCC----ceEEEEECCCCCeEeCccC-CC-----cCce-ECCCCCEEEEEE
Confidence 88 43332 11111233456 57777654322 3789999998887655321 11 1111 222454 44443
Q ss_pred ecCC-----CeEEEEEeccCCCCCCeeEEEEEcccccccccccccceeeeeEEeeeccCCCCCCeEEEEECC---CeEEE
Q 036467 266 MWRE-----DRVEIWTMKDFGARESWTRMFVIGRRALINFDNYAFVHLKPVCEMMNLSNGNGKNFLLIEKGD---GELIL 337 (369)
Q Consensus 266 ~~~~-----~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~ 337 (369)
.... ...+|++++-.+ ..+..+.. ... ...|. + ..+ |..|++.... ..+..
T Consensus 338 ~~~~~~~~~~~~~I~v~d~~~--g~~~~LT~---~~~---------~~~p~-~----SPD--G~~I~f~~~~~~~~~L~~ 396 (419)
T PRK04043 338 RETNNEFGKNTFNLYLISTNS--DYIRRLTA---NGV---------NQFPR-F----SSD--GGSIMFIKYLGNQSALGI 396 (419)
T ss_pred cCCCcccCCCCcEEEEEECCC--CCeEECCC---CCC---------cCCeE-E----CCC--CCEEEEEEccCCcEEEEE
Confidence 3221 236888887422 22332221 111 12233 4 445 4667776532 23899
Q ss_pred EECCCCeEEEeEE
Q 036467 338 YDFENEIATDFKI 350 (369)
Q Consensus 338 ydl~~~~~~~v~~ 350 (369)
+++..+.-..+..
T Consensus 397 ~~l~g~~~~~l~~ 409 (419)
T PRK04043 397 IRLNYNKSFLFPL 409 (419)
T ss_pred EecCCCeeEEeec
Confidence 9998877666644
No 133
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=28.58 E-value=3.8e+02 Score=24.70 Aligned_cols=66 Identities=17% Similarity=0.233 Sum_probs=40.1
Q ss_pred EEEEEecCCCeEEEEEeccCCCCCCeeEEEEEcccccccccccccceeeeeEEeeeccCCCCCCeEEEE-ECCCeEEEEE
Q 036467 261 FAMFHMWREDRVEIWTMKDFGARESWTRMFVIGRRALINFDNYAFVHLKPVCEMMNLSNGNGKNFLLIE-KGDGELILYD 339 (369)
Q Consensus 261 L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~yd 339 (369)
=++.....+..|.+|-+.- + ..++++.- .+...+.+.+ ..+ |+-++. .+++.+-+||
T Consensus 305 ~~l~s~SrDktIk~wdv~t---g---~cL~tL~g---------hdnwVr~~af----~p~---Gkyi~ScaDDktlrvwd 362 (406)
T KOG0295|consen 305 QVLGSGSRDKTIKIWDVST---G---MCLFTLVG---------HDNWVRGVAF----SPG---GKYILSCADDKTLRVWD 362 (406)
T ss_pred cEEEeecccceEEEEeccC---C---eEEEEEec---------ccceeeeeEE----cCC---CeEEEEEecCCcEEEEE
Confidence 3444444466899999885 2 23333331 2223556666 555 555554 4566699999
Q ss_pred CCCCeEEEe
Q 036467 340 FENEIATDF 348 (369)
Q Consensus 340 l~~~~~~~v 348 (369)
+++++..+.
T Consensus 363 l~~~~cmk~ 371 (406)
T KOG0295|consen 363 LKNLQCMKT 371 (406)
T ss_pred eccceeeec
Confidence 999997665
No 134
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=27.12 E-value=1.6e+02 Score=22.80 Aligned_cols=22 Identities=27% Similarity=0.302 Sum_probs=17.4
Q ss_pred CCeEEEEECCCeEEEEECCCCe
Q 036467 323 KNFLLIEKGDGELILYDFENEI 344 (369)
Q Consensus 323 ~~~i~~~~~~~~~~~ydl~~~~ 344 (369)
+.+++++.....+++||.+.+.
T Consensus 63 ~~D~LliGt~t~llaYDV~~N~ 84 (136)
T PF14781_consen 63 GRDCLLIGTQTSLLAYDVENNS 84 (136)
T ss_pred CcCEEEEeccceEEEEEcccCc
Confidence 3567777777779999999886
No 135
>KOG1852 consensus Cell cycle-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=27.10 E-value=14 Score=28.85 Aligned_cols=30 Identities=20% Similarity=0.526 Sum_probs=24.1
Q ss_pred ccCCcc--ccceeeecccchhcccCChhhHHH
Q 036467 12 TRLPVK--SLIRFKCVSKSMYALVHNKIFIKK 41 (369)
Q Consensus 12 ~rLp~~--~l~r~r~VcK~W~~li~~~~F~~~ 41 (369)
+|+..| ++.++.+||++-+++.+...|.++
T Consensus 144 srvsikessv~klgsvcrrvyrifsha~fhhr 175 (223)
T KOG1852|consen 144 SRVSIKESSVAKLGSVCRRVYRIFSHAYFHHR 175 (223)
T ss_pred cccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466655 688999999999999988888543
No 136
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=26.14 E-value=4.7e+02 Score=23.23 Aligned_cols=140 Identities=9% Similarity=0.118 Sum_probs=79.9
Q ss_pred cCCceEEEEcCCccceeeCCCCCCCCCCCcccceEEEEEeeeCCCCCeEEEEEEeeeCCCcccCCCCcceEEEEEcCCCc
Q 036467 106 SCNEDIFLFNPSTKKYKKLPVPEFDVPTIETTCFTSLGFGYHQADDDYKVIRSIYLYDKPFVDIDSYECEARVYSLASDK 185 (369)
Q Consensus 106 ~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~vys~~t~~ 185 (369)
.+++++-+||-.+.....+-.-.. .. ... .+-+.|...+..++.... ...+.|.++++.+
T Consensus 124 SrDkTiklwnt~g~ck~t~~~~~~--~~----WVs--cvrfsP~~~~p~Ivs~s~------------DktvKvWnl~~~~ 183 (315)
T KOG0279|consen 124 SRDKTIKLWNTLGVCKYTIHEDSH--RE----WVS--CVRFSPNESNPIIVSASW------------DKTVKVWNLRNCQ 183 (315)
T ss_pred CCcceeeeeeecccEEEEEecCCC--cC----cEE--EEEEcCCCCCcEEEEccC------------CceEEEEccCCcc
Confidence 367788999999888887754421 11 223 344456655566655433 5678888887765
Q ss_pred eEEccCCCCeeeccCCcEEECceEEEEeecCCCCCceeEEEEEECCCcceeeeCCCCCcCCCCCceeEEEEECCcEEEEE
Q 036467 186 WKKINGGIPYHISSRAAVCFNECLIWKASRGLGRGMTVLVVAFDMNREEFKEIHRPEYKDSHDKCQIEVGVFRGEFAMFH 265 (369)
Q Consensus 186 W~~~~~~~p~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~l~~~~G~L~~~~ 265 (369)
=+..-.. -........|..||.+---++.+ ..++-.|+...+--. -++.. .....++-...+..++.
T Consensus 184 l~~~~~g-h~~~v~t~~vSpDGslcasGgkd------g~~~LwdL~~~k~ly-sl~a~-----~~v~sl~fspnrywL~~ 250 (315)
T KOG0279|consen 184 LRTTFIG-HSGYVNTVTVSPDGSLCASGGKD------GEAMLWDLNEGKNLY-SLEAF-----DIVNSLCFSPNRYWLCA 250 (315)
T ss_pred hhhcccc-ccccEEEEEECCCCCEEecCCCC------ceEEEEEccCCceeE-eccCC-----CeEeeEEecCCceeEee
Confidence 5433000 00011112267788876555554 377888887654411 11111 12335555667777766
Q ss_pred ecCCCeEEEEEecc
Q 036467 266 MWREDRVEIWTMKD 279 (369)
Q Consensus 266 ~~~~~~~~iW~l~~ 279 (369)
... ..+.||.++.
T Consensus 251 at~-~sIkIwdl~~ 263 (315)
T KOG0279|consen 251 ATA-TSIKIWDLES 263 (315)
T ss_pred ccC-CceEEEeccc
Confidence 643 4799999985
No 137
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=24.73 E-value=6.4e+02 Score=24.34 Aligned_cols=54 Identities=17% Similarity=0.108 Sum_probs=36.8
Q ss_pred EEECceEEEEeecCCCCCceeEEEEEECCCcc--eeeeCCCCCcCCCCCceeEEEEECCcEEEEEecC
Q 036467 203 VCFNECLIWKASRGLGRGMTVLVVAFDMNREE--FKEIHRPEYKDSHDKCQIEVGVFRGEFAMFHMWR 268 (369)
Q Consensus 203 v~~~G~lyw~~~~~~~~~~~~~il~fD~~~e~--~~~i~~P~~~~~~~~~~~~l~~~~G~L~~~~~~~ 268 (369)
+..+|.+|.-...+ .+.+||.++.+ |+ .++|... ...+.+.+.+|++|+.....
T Consensus 403 ~~~g~~v~~g~~dG-------~l~ald~~tG~~lW~-~~~~~~~----~a~P~~~~~~g~~yv~~~~g 458 (488)
T cd00216 403 ATAGNLVFAGAADG-------YFRAFDATTGKELWK-FRTPSGI----QATPMTYEVNGKQYVGVMVG 458 (488)
T ss_pred EecCCeEEEECCCC-------eEEEEECCCCceeeE-EECCCCc----eEcCEEEEeCCEEEEEEEec
Confidence 56677787776554 89999998753 44 4666544 12344557799999988754
No 138
>PF00568 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1, RanBP1-WASP) domain is found in multi-domain proteins implicated in a diverse range of signalling, nuclear transport and cytoskeletal events. This domain of around 115 amino acids is present in species ranging from yeast to mammals. Many EVH1-containing proteins associate with actin-based structures and play a role in cytoskeletal organisation. EVH1 domains recognise and bind the proline-rich motif FPPPP with low-affinity, further interactions then form between flanking residues [][]. WASP family proteins contain a EVH1 (WH1) in their N-terminals which bind proline-rich sequences in the WASP interacting protein. Proteins of the RanBP1 family contain a WH1 domain in their N-terminal region, which seems to bind a different sequence motif present in the C-terminal part of RanGTP protein [,]. Tertiary structure of the WH1 domain of the Mena protein revealed structure similarities with the pleckstrin homology (PH) domain. The overall fold consists of a compact parallel beta-sandwich, closed along one edge by a long alpha-helix. A highly conserved cluster of three surface-exposed aromatic side-chains forms the recognition site for the molecules target ligands. [].; GO: 0005515 protein binding; PDB: 1I2H_A 1DDV_A 1DDW_A 1EGX_A 3SYX_A 1TJ6_B 1XOD_B 1EVH_A 1I7A_B 2JP2_A ....
Probab=24.66 E-value=2.9e+02 Score=20.35 Aligned_cols=39 Identities=13% Similarity=0.215 Sum_probs=29.6
Q ss_pred ceEEEEcCCccc-eeeCCCCCCCCCCCcccceEEEEEeeeCCCCCeEEEEEE
Q 036467 109 EDIFLFNPSTKK-YKKLPVPEFDVPTIETTCFTSLGFGYHQADDDYKVIRSI 159 (369)
Q Consensus 109 ~~~~V~NP~T~~-~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~ 159 (369)
-+++..+|-+++ |... . ....+.+..|...+.|.|....
T Consensus 16 A~v~~~~p~~~~~W~~~---~---------~~g~v~~v~d~~~~~y~I~~~~ 55 (111)
T PF00568_consen 16 AQVYQADPDTKRQWSPV---K---------GTGVVCFVKDNSRRSYFIRLYD 55 (111)
T ss_dssp EEEEEEETTTSESEEES---S---------SEEEEEEEEETTTTEEEEEEEE
T ss_pred EEEEEEEcCCCCcEeeC---C---------eEEEEEEEEECCCCEEEEEEEE
Confidence 578999999888 9876 1 3455677788888888887765
No 139
>PF02393 US22: US22 like; InterPro: IPR003360 Herpesviruses are large and complex DNA viruses, widely found in nature. Human cytomegalovirus (HCMV), an important human pathogen, defines the betaherpesvirus family. Mouse cytomegalovirus (MCMV) and rat cytomegalovirus serve as biological model systems for HCMV. HCMV, MCMV, and rat CMV display the largest genomes among the herpesviruses and are essentially co-linear over the central 180 kb of the 230-kb genomes. Betaherpesviruses, which include the CMVs as well as human herpesviruses 6 and 7, differ from alpha- and gammaherpesviruses by the presence of additional gene families such as the US22 gene family, which are mainly clustered at the ends of the genome. The US22 family was first described in HCMV. This gene family comprises 12 members in both HCMV and MCMV and 11 in rat CMV []. Members of the US22 gene family are characterised by stretches of hydrophobic and charged residues as well as up to four conserved sequence motifs which are specific for betaherpesviruses. Motif I differs between the HCMV US and UL family members []. Motifs I and II have consensus sequences, while motifs III and IV are less well defined but have stretches of non-polar residues [, ]. Members of this gene family are widely divergent in function and their involvement in viral replication []. This entry contains US22 family members from the Cytomegalovirus, Muromegalovirus and the Roseolovirus taxonomic groups. The name sake of this family US22 is an early nuclear protein that is secreted from cells []. The US22 family may have a role in virus replication and pathogenesis [].
Probab=24.03 E-value=1.5e+02 Score=22.23 Aligned_cols=26 Identities=15% Similarity=0.326 Sum_probs=20.5
Q ss_pred CeEEEEECCCeEEEEECCCCeEEEeE
Q 036467 324 NFLLIEKGDGELILYDFENEIATDFK 349 (369)
Q Consensus 324 ~~i~~~~~~~~~~~ydl~~~~~~~v~ 349 (369)
..+++....+.++.||++++.+..+.
T Consensus 82 ~~vvl~~~~G~Vy~yd~~~~~l~~lA 107 (125)
T PF02393_consen 82 RLVVLVGESGRVYAYDPEDDRLYRLA 107 (125)
T ss_pred eEEEEEeCCCeEEEEEcCCCEEEEEe
Confidence 45666666778999999999888875
No 140
>PRK04792 tolB translocation protein TolB; Provisional
Probab=23.47 E-value=6.5e+02 Score=23.96 Aligned_cols=144 Identities=12% Similarity=0.066 Sum_probs=68.7
Q ss_pred ceEEEEEcCCCceEEccCCCCeeeccCCcEEECce-EEEEeecCCCCCceeEEEEEECCCcceeeeCCCCCcCCCCCcee
Q 036467 174 CEARVYSLASDKWKKINGGIPYHISSRAAVCFNEC-LIWKASRGLGRGMTVLVVAFDMNREEFKEIHRPEYKDSHDKCQI 252 (369)
Q Consensus 174 ~~~~vys~~t~~W~~~~~~~p~~~~~~~~v~~~G~-lyw~~~~~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~~ 252 (369)
..+.+++..++.-+.+ ...+.. .......-||. +++....+. ...|..+|+.+.+...+.-.... ...+
T Consensus 242 ~~L~~~dl~tg~~~~l-t~~~g~-~~~~~wSPDG~~La~~~~~~g----~~~Iy~~dl~tg~~~~lt~~~~~----~~~p 311 (448)
T PRK04792 242 AEIFVQDIYTQVREKV-TSFPGI-NGAPRFSPDGKKLALVLSKDG----QPEIYVVDIATKALTRITRHRAI----DTEP 311 (448)
T ss_pred cEEEEEECCCCCeEEe-cCCCCC-cCCeeECCCCCEEEEEEeCCC----CeEEEEEECCCCCeEECccCCCC----ccce
Confidence 3455666666555444 222211 01111233554 544433322 13788899998887665321111 1112
Q ss_pred EEEEECCcEEEEEecCCCeEEEEEeccCCCCCCeeEEEEEcccccccccccccceeeeeEEeeeccCCCCCCeEEEEECC
Q 036467 253 EVGVFRGEFAMFHMWREDRVEIWTMKDFGARESWTRMFVIGRRALINFDNYAFVHLKPVCEMMNLSNGNGKNFLLIEKGD 332 (369)
Q Consensus 253 ~l~~~~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 332 (369)
.. .-+|+-.++........+||.++-.+ ..+.++. .... . ...+ .+ ..+ |..|++....
T Consensus 312 ~w-SpDG~~I~f~s~~~g~~~Iy~~dl~~--g~~~~Lt---~~g~-------~-~~~~-~~----SpD--G~~l~~~~~~ 370 (448)
T PRK04792 312 SW-HPDGKSLIFTSERGGKPQIYRVNLAS--GKVSRLT---FEGE-------Q-NLGG-SI----TPD--GRSMIMVNRT 370 (448)
T ss_pred EE-CCCCCEEEEEECCCCCceEEEEECCC--CCEEEEe---cCCC-------C-CcCe-eE----CCC--CCEEEEEEec
Confidence 21 22455433333333457889887532 3354432 1110 0 0122 33 334 4667675432
Q ss_pred ---CeEEEEECCCCeEEEe
Q 036467 333 ---GELILYDFENEIATDF 348 (369)
Q Consensus 333 ---~~~~~ydl~~~~~~~v 348 (369)
..++.+|+++++.+.+
T Consensus 371 ~g~~~I~~~dl~~g~~~~l 389 (448)
T PRK04792 371 NGKFNIARQDLETGAMQVL 389 (448)
T ss_pred CCceEEEEEECCCCCeEEc
Confidence 2488899999887665
No 141
>PRK13684 Ycf48-like protein; Provisional
Probab=23.17 E-value=5.7e+02 Score=23.21 Aligned_cols=153 Identities=13% Similarity=0.152 Sum_probs=0.0
Q ss_pred EEEcCCC--ceEEccCCCCeeeccCCcEEECceEEEEeecCCCCCceeEEEEE-ECCCcceeeeCCCCCcCCCCCceeEE
Q 036467 178 VYSLASD--KWKKINGGIPYHISSRAAVCFNECLIWKASRGLGRGMTVLVVAF-DMNREEFKEIHRPEYKDSHDKCQIEV 254 (369)
Q Consensus 178 vys~~t~--~W~~~~~~~p~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~il~f-D~~~e~~~~i~~P~~~~~~~~~~~~l 254 (369)
||.+..+ +|+.+ ..........-...-+|.+...+..+ .++.- |-..++|+.++.+... .-..+
T Consensus 154 i~~S~DgG~tW~~~-~~~~~g~~~~i~~~~~g~~v~~g~~G-------~i~~s~~~gg~tW~~~~~~~~~-----~l~~i 220 (334)
T PRK13684 154 IYRTTDGGKNWEAL-VEDAAGVVRNLRRSPDGKYVAVSSRG-------NFYSTWEPGQTAWTPHQRNSSR-----RLQSM 220 (334)
T ss_pred EEEECCCCCCceeC-cCCCcceEEEEEECCCCeEEEEeCCc-------eEEEEcCCCCCeEEEeeCCCcc-----cceee
Q ss_pred EEEC-CcEEEEEecCCCeEEEEEeccCCCCCCeeEEEEEcccccccccccccceeeeeEEeeeccCCCCCCeEEEEECCC
Q 036467 255 GVFR-GEFAMFHMWREDRVEIWTMKDFGARESWTRMFVIGRRALINFDNYAFVHLKPVCEMMNLSNGNGKNFLLIEKGDG 333 (369)
Q Consensus 255 ~~~~-G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 333 (369)
+... |+++++.......+. ..+.+.+|+....-...... ...-+.+ ..+ +.+++....+
T Consensus 221 ~~~~~g~~~~vg~~G~~~~~-----s~d~G~sW~~~~~~~~~~~~--------~l~~v~~----~~~---~~~~~~G~~G 280 (334)
T PRK13684 221 GFQPDGNLWMLARGGQIRFN-----DPDDLESWSKPIIPEITNGY--------GYLDLAY----RTP---GEIWAGGGNG 280 (334)
T ss_pred eEcCCCCEEEEecCCEEEEc-----cCCCCCccccccCCcccccc--------ceeeEEE----cCC---CCEEEEcCCC
Q ss_pred eEEEEECCCCeEEEeEE-ecCCCeeEEeeee
Q 036467 334 ELILYDFENEIATDFKI-QRAPRWFSVTTFV 363 (369)
Q Consensus 334 ~~~~ydl~~~~~~~v~~-~~~~~~~~~~~y~ 363 (369)
.++.-.-..++|+.+.. .+.+..+....|.
T Consensus 281 ~v~~S~d~G~tW~~~~~~~~~~~~~~~~~~~ 311 (334)
T PRK13684 281 TLLVSKDGGKTWEKDPVGEEVPSNFYKIVFL 311 (334)
T ss_pred eEEEeCCCCCCCeECCcCCCCCcceEEEEEe
No 142
>PF06058 DCP1: Dcp1-like decapping family; InterPro: IPR010334 An essential step in mRNA turnover is decapping. In yeast, two proteins have been identified that are essential for decapping, Dcp1 (this family) and Dcp2 (IPR007722 from INTERPRO). The precise role of these proteins in the decapping reaction has not been established. Evidence suggests that the Dcp1 may enhance the function of Dcp2 [].; PDB: 1Q67_A 2QKM_C 2QKL_A.
Probab=23.16 E-value=1.4e+02 Score=22.67 Aligned_cols=28 Identities=14% Similarity=0.115 Sum_probs=20.3
Q ss_pred EEEEECCCeEEEEECCCCeEEEeEEecC
Q 036467 326 LLIEKGDGELILYDFENEIATDFKIQRA 353 (369)
Q Consensus 326 i~~~~~~~~~~~ydl~~~~~~~v~~~~~ 353 (369)
|+.....-.++.||.++++|++..+.|.
T Consensus 22 Il~~a~~v~vY~f~~~~~~W~K~~iEG~ 49 (122)
T PF06058_consen 22 ILDTASHVVVYKFDHETNEWEKTDIEGT 49 (122)
T ss_dssp EEEEEEEEEEEEEETTTTEEEEEEEEEE
T ss_pred HHhhCCeEEEEeecCCCCcEeecCcEee
Confidence 4444333347788899999999998875
No 143
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=22.82 E-value=8.2e+02 Score=24.92 Aligned_cols=192 Identities=17% Similarity=0.222 Sum_probs=92.6
Q ss_pred EEeeecccEEEeeccCCceEEEEcCCccceeeCCCCCCCCCCCcccceEEEEEeeeCCCCCeEEEEEEeeeCCCcccCCC
Q 036467 92 ISGSCNGLLCISDQSCNEDIFLFNPSTKKYKKLPVPEFDVPTIETTCFTSLGFGYHQADDDYKVIRSIYLYDKPFVDIDS 171 (369)
Q Consensus 92 ~~~s~~GLl~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~ 171 (369)
+.-+.||=.+.+. ....+-+-+-.|++.. +|........ ....+.+..| +=+++....
T Consensus 25 ~~~s~nG~~L~t~--~~d~Vi~idv~t~~~~-l~s~~~ed~d----~ita~~l~~d----~~~L~~a~r----------- 82 (775)
T KOG0319|consen 25 VAWSSNGQHLYTA--CGDRVIIIDVATGSIA-LPSGSNEDED----EITALALTPD----EEVLVTASR----------- 82 (775)
T ss_pred eeECCCCCEEEEe--cCceEEEEEccCCcee-cccCCccchh----hhheeeecCC----ccEEEEeec-----------
Confidence 4446777665554 3455677777787776 5544322211 2233333322 233333332
Q ss_pred CcceEEEEEcCCC----ceEEccCCCCeeeccCCcEEECceEEEEeecCCCCCceeEEEEEECCCcceeee--CCCCCcC
Q 036467 172 YECEARVYSLASD----KWKKINGGIPYHISSRAAVCFNECLIWKASRGLGRGMTVLVVAFDMNREEFKEI--HRPEYKD 245 (369)
Q Consensus 172 ~~~~~~vys~~t~----~W~~~~~~~p~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~e~~~~i--~~P~~~~ 245 (369)
....++|++.++ +|+.+ ...|.-. +-+++.-.-++..+.. ..+...|...+..+.- -.|-
T Consensus 83 -s~llrv~~L~tgk~irswKa~-He~Pvi~-----ma~~~~g~LlAtggaD----~~v~VWdi~~~~~th~fkG~gG--- 148 (775)
T KOG0319|consen 83 -SQLLRVWSLPTGKLIRSWKAI-HEAPVIT-----MAFDPTGTLLATGGAD----GRVKVWDIKNGYCTHSFKGHGG--- 148 (775)
T ss_pred -cceEEEEEcccchHhHhHhhc-cCCCeEE-----EEEcCCCceEEecccc----ceEEEEEeeCCEEEEEecCCCc---
Confidence 577899999875 88876 3333221 2222222333333321 2666777766654432 1121
Q ss_pred CCCCceeEEEEECC---cEEEEEecCCCeEEEEEeccCCCCCCeeEEEEEcccccccccccccceeeeeEEeeeccCCCC
Q 036467 246 SHDKCQIEVGVFRG---EFAMFHMWREDRVEIWTMKDFGARESWTRMFVIGRRALINFDNYAFVHLKPVCEMMNLSNGNG 322 (369)
Q Consensus 246 ~~~~~~~~l~~~~G---~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (369)
......+++ +..++.+..+..+.+|-+++- .. .++.+- ........+.+ ..+
T Consensus 149 -----vVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~---~t--cl~~~~---------~H~S~vtsL~~----~~d-- 203 (775)
T KOG0319|consen 149 -----VVSSLLFHPHWNRWLLASGATDGTVRVWNLNDK---RT--CLHTMI---------LHKSAVTSLAF----SED-- 203 (775)
T ss_pred -----eEEEEEeCCccchhheeecCCCceEEEEEcccC---ch--HHHHHH---------hhhhheeeeee----ccC--
Confidence 223333332 223344444567888888751 11 011111 11112444555 444
Q ss_pred CCeEEEEECCCeEEEEECCCCe
Q 036467 323 KNFLLIEKGDGELILYDFENEI 344 (369)
Q Consensus 323 ~~~i~~~~~~~~~~~ydl~~~~ 344 (369)
+.+++-...++-+..||+++-+
T Consensus 204 ~~~~ls~~RDkvi~vwd~~~~~ 225 (775)
T KOG0319|consen 204 SLELLSVGRDKVIIVWDLVQYK 225 (775)
T ss_pred CceEEEeccCcEEEEeehhhhh
Confidence 3555555555557888885443
No 144
>PF11900 DUF3420: Domain of unknown function (DUF3420); InterPro: IPR024228 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes and is about 50 amino acids in length.
Probab=22.41 E-value=57 Score=20.27 Aligned_cols=10 Identities=30% Similarity=0.870 Sum_probs=7.6
Q ss_pred CCcHHHHHHH
Q 036467 1 NLPTDIITDI 10 (369)
Q Consensus 1 ~LP~Dll~eI 10 (369)
+||.|++++|
T Consensus 10 ~LP~eVv~kI 19 (49)
T PF11900_consen 10 ELPPEVVKKI 19 (49)
T ss_pred cCCHHHHHHH
Confidence 4788888875
No 145
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=22.30 E-value=4e+02 Score=24.61 Aligned_cols=50 Identities=8% Similarity=0.161 Sum_probs=31.1
Q ss_pred eEEEEEECCCcceeeeCCCCCcCCCCCceeEEEEE--CCcEEEEEecCCCeEEEEEecc
Q 036467 223 VLVVAFDMNREEFKEIHRPEYKDSHDKCQIEVGVF--RGEFAMFHMWREDRVEIWTMKD 279 (369)
Q Consensus 223 ~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~l~~~--~G~L~~~~~~~~~~~~iW~l~~ 279 (369)
..|...|++++.-..++ |... ..+.+..+ +|...++...+ ..+++|....
T Consensus 218 ssi~iWdpdtg~~~pL~-~~gl-----gg~slLkwSPdgd~lfaAt~d-avfrlw~e~q 269 (445)
T KOG2139|consen 218 SSIMIWDPDTGQKIPLI-PKGL-----GGFSLLKWSPDGDVLFAATCD-AVFRLWQENQ 269 (445)
T ss_pred ceEEEEcCCCCCccccc-ccCC-----CceeeEEEcCCCCEEEEeccc-ceeeeehhcc
Confidence 48999999999875554 2222 23445555 46655555543 4788886553
No 146
>cd00837 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. The EVH1 domain binds to other proteins at proline rich sequences in either FPPPP or PPXXF motifs. It is found in the cytoskeletal reorganization proteins Enabled VASP, and WASP, and in the synaptic scaffolding protein Homer. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=22.06 E-value=3.2e+02 Score=19.89 Aligned_cols=42 Identities=12% Similarity=0.180 Sum_probs=31.8
Q ss_pred CceEEEEcCCccceeeCCCCCCCCCCCcccceEEEEEeeeCCCCCeEEEEEEe
Q 036467 108 NEDIFLFNPSTKKYKKLPVPEFDVPTIETTCFTSLGFGYHQADDDYKVIRSIY 160 (369)
Q Consensus 108 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~ 160 (369)
..+++..+|.+++|...- . ....+.+..|+..+.|.++....
T Consensus 8 ~a~v~~~~~~~~~W~~~~--~---------~~g~v~~~~d~~~~~y~i~~~~~ 49 (104)
T cd00837 8 VAQVYTADPSTGKWVPAS--G---------GTGAVSLVKDSTRNTYRIRGVDI 49 (104)
T ss_pred EEEEEEECCCCCceEECC--C---------CeEEEEEEEECCCCEEEEEEEec
Confidence 357899999999998642 1 34667788898888898887654
No 147
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=22.04 E-value=5.7e+02 Score=22.81 Aligned_cols=83 Identities=14% Similarity=0.289 Sum_probs=48.8
Q ss_pred eeEEEEECCcEEEEEecCCCeEEEEEeccCCCCCCeeEEEEEcccccccccccccceeeeeEEeeeccCCCCCCeEEEEE
Q 036467 251 QIEVGVFRGEFAMFHMWREDRVEIWTMKDFGARESWTRMFVIGRRALINFDNYAFVHLKPVCEMMNLSNGNGKNFLLIEK 330 (369)
Q Consensus 251 ~~~l~~~~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 330 (369)
-..+..++|+|.+.. ...+.++.++.. +++.+....+.... ..-+.. . + +.|++..
T Consensus 91 V~ai~~~~~~lv~~~---g~~l~v~~l~~~---~~l~~~~~~~~~~~----------i~sl~~----~-~---~~I~vgD 146 (321)
T PF03178_consen 91 VTAICSFNGRLVVAV---GNKLYVYDLDNS---KTLLKKAFYDSPFY----------ITSLSV----F-K---NYILVGD 146 (321)
T ss_dssp EEEEEEETTEEEEEE---TTEEEEEEEETT---SSEEEEEEE-BSSS----------EEEEEE----E-T---TEEEEEE
T ss_pred ceEhhhhCCEEEEee---cCEEEEEEccCc---ccchhhheecceEE----------EEEEec----c-c---cEEEEEE
Confidence 356788899855554 358999999862 24777777665333 222222 2 2 5666654
Q ss_pred CCCe--EEEEECCCCeEEEeEEecCCCee
Q 036467 331 GDGE--LILYDFENEIATDFKIQRAPRWF 357 (369)
Q Consensus 331 ~~~~--~~~ydl~~~~~~~v~~~~~~~~~ 357 (369)
--+. ++.|+-+.+++..+..+..+.+.
T Consensus 147 ~~~sv~~~~~~~~~~~l~~va~d~~~~~v 175 (321)
T PF03178_consen 147 AMKSVSLLRYDEENNKLILVARDYQPRWV 175 (321)
T ss_dssp SSSSEEEEEEETTTE-EEEEEEESS-BEE
T ss_pred cccCEEEEEEEccCCEEEEEEecCCCccE
Confidence 3332 66778877888888766544433
No 148
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=21.45 E-value=6e+02 Score=22.86 Aligned_cols=57 Identities=19% Similarity=0.078 Sum_probs=36.4
Q ss_pred EEECceEEEEeecCCCCCceeEEEEEECCCcceeeeCCCCCcCCCCCceeEEEEEC-CcEEEEEecC
Q 036467 203 VCFNECLIWKASRGLGRGMTVLVVAFDMNREEFKEIHRPEYKDSHDKCQIEVGVFR-GEFAMFHMWR 268 (369)
Q Consensus 203 v~~~G~lyw~~~~~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~l~~~~-G~L~~~~~~~ 268 (369)
+-.+|.+|..+..+. ..|..|+++.+....+.+|.... ..+.++.-+ ..|++.+...
T Consensus 220 vDadG~lw~~a~~~g-----~~v~~~~pdG~l~~~i~lP~~~~----t~~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 220 VDADGNLWVAAVWGG-----GRVVRFNPDGKLLGEIKLPVKRP----TNPAFGGPDLNTLYITSARS 277 (307)
T ss_pred EeCCCCEEEecccCC-----ceEEEECCCCcEEEEEECCCCCC----ccceEeCCCcCEEEEEecCC
Confidence 777788885443322 28999999988889999995321 233333333 5677766544
No 149
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=21.40 E-value=4e+02 Score=25.28 Aligned_cols=74 Identities=18% Similarity=0.230 Sum_probs=43.8
Q ss_pred CCcEEEEEecCCCeEEEEEeccCCCCCCeeEEEEEcccccccccccccceeeeeEEeeeccCCCCCCeEEEEECCC---e
Q 036467 258 RGEFAMFHMWREDRVEIWTMKDFGARESWTRMFVIGRRALINFDNYAFVHLKPVCEMMNLSNGNGKNFLLIEKGDG---E 334 (369)
Q Consensus 258 ~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~ 334 (369)
+|+-.++........+||+++-.+.. .+. +.... .....|... . + |..|+|..+.. .
T Consensus 248 DG~~l~f~~~rdg~~~iy~~dl~~~~-~~~------Lt~~~------gi~~~Ps~s----p-d--G~~ivf~Sdr~G~p~ 307 (425)
T COG0823 248 DGSKLAFSSSRDGSPDIYLMDLDGKN-LPR------LTNGF------GINTSPSWS----P-D--GSKIVFTSDRGGRPQ 307 (425)
T ss_pred CCCEEEEEECCCCCccEEEEcCCCCc-cee------cccCC------ccccCccCC----C-C--CCEEEEEeCCCCCcc
Confidence 45444444444568999999975432 121 11111 111244443 4 3 48888886532 4
Q ss_pred EEEEECCCCeEEEeEEe
Q 036467 335 LILYDFENEIATDFKIQ 351 (369)
Q Consensus 335 ~~~ydl~~~~~~~v~~~ 351 (369)
++.||+++++...+-..
T Consensus 308 I~~~~~~g~~~~riT~~ 324 (425)
T COG0823 308 IYLYDLEGSQVTRLTFS 324 (425)
T ss_pred eEEECCCCCceeEeecc
Confidence 99999999999887543
No 150
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=21.34 E-value=7.5e+02 Score=23.88 Aligned_cols=141 Identities=15% Similarity=0.100 Sum_probs=75.1
Q ss_pred ceEEEEEcCCCceEEccCCCCeeeccC------------CcEEECceEEEEeecCCCCCceeEEEEEECCCcceeeeCCC
Q 036467 174 CEARVYSLASDKWKKINGGIPYHISSR------------AAVCFNECLIWKASRGLGRGMTVLVVAFDMNREEFKEIHRP 241 (369)
Q Consensus 174 ~~~~vys~~t~~W~~~~~~~p~~~~~~------------~~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~e~~~~i~~P 241 (369)
-.+.+|++.+++-..++-.+|...... .-..++|-++-+...+ ....+++...-- |+++
T Consensus 287 GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRG-------kaFi~~~~~~~~--iqv~ 357 (668)
T COG4946 287 GDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRG-------KAFIMRPWDGYS--IQVG 357 (668)
T ss_pred CcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecC-------cEEEECCCCCee--EEcC
Confidence 456778888887777755555432111 1156788888888776 555665544333 3444
Q ss_pred CCcCCCCCceeEEEEECCcEEEEEecCCCeEEEEEeccCCCCCCeeEEEEEcccccccccccccceeeeeEEeeeccCCC
Q 036467 242 EYKDSHDKCQIEVGVFRGEFAMFHMWREDRVEIWTMKDFGARESWTRMFVIGRRALINFDNYAFVHLKPVCEMMNLSNGN 321 (369)
Q Consensus 242 ~~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (369)
.... -....+..... -.++...++..+.|.-.+. + ++.++...-- ....+.+ ..+
T Consensus 358 ~~~~---VrY~r~~~~~e-~~vigt~dgD~l~iyd~~~--~-----e~kr~e~~lg---------~I~av~v----s~d- 412 (668)
T COG4946 358 KKGG---VRYRRIQVDPE-GDVIGTNDGDKLGIYDKDG--G-----EVKRIEKDLG---------NIEAVKV----SPD- 412 (668)
T ss_pred CCCc---eEEEEEccCCc-ceEEeccCCceEEEEecCC--c-----eEEEeeCCcc---------ceEEEEE----cCC-
Confidence 3331 01223333322 2233333445666654442 1 2222221110 1233455 555
Q ss_pred CCCeEEEEECCCeEEEEECCCCeEEEeE
Q 036467 322 GKNFLLIEKGDGELILYDFENEIATDFK 349 (369)
Q Consensus 322 ~~~~i~~~~~~~~~~~ydl~~~~~~~v~ 349 (369)
|.++++..+..++..+|+++++.+.++
T Consensus 413 -GK~~vvaNdr~el~vididngnv~~id 439 (668)
T COG4946 413 -GKKVVVANDRFELWVIDIDNGNVRLID 439 (668)
T ss_pred -CcEEEEEcCceEEEEEEecCCCeeEec
Confidence 344666655567999999999998885
No 151
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=21.29 E-value=4.7e+02 Score=21.57 Aligned_cols=22 Identities=23% Similarity=0.520 Sum_probs=15.3
Q ss_pred CeEEEEEC-CCeEEEEECCCCeE
Q 036467 324 NFLLIEKG-DGELILYDFENEIA 345 (369)
Q Consensus 324 ~~i~~~~~-~~~~~~ydl~~~~~ 345 (369)
+.+++... ++.+..||+++++.
T Consensus 231 ~~~~~~~~~~~~i~i~~~~~~~~ 253 (289)
T cd00200 231 GYLLASGSEDGTIRVWDLRTGEC 253 (289)
T ss_pred CcEEEEEcCCCcEEEEEcCCcee
Confidence 55666554 56699999987654
No 152
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=21.18 E-value=6.8e+02 Score=23.38 Aligned_cols=153 Identities=18% Similarity=0.186 Sum_probs=76.3
Q ss_pred cceEEEEEcCCCceEEccCCCCeeeccCCcEEECceEEEE--eecCCCCCceeEEEEEECCCcceeeeC---CCCCcCCC
Q 036467 173 ECEARVYSLASDKWKKINGGIPYHISSRAAVCFNECLIWK--ASRGLGRGMTVLVVAFDMNREEFKEIH---RPEYKDSH 247 (369)
Q Consensus 173 ~~~~~vys~~t~~W~~~~~~~p~~~~~~~~v~~~G~lyw~--~~~~~~~~~~~~il~fD~~~e~~~~i~---~P~~~~~~ 247 (369)
...+.||++..+.=..+...-+.......++-++|.-.=+ +...........+..+|..+...+.+. .|......
T Consensus 77 ~~GL~VYdL~Gk~lq~~~~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~~~~~p~~~~~~ 156 (381)
T PF02333_consen 77 KGGLYVYDLDGKELQSLPVGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVTDPAAPIATDLS 156 (381)
T ss_dssp TTEEEEEETTS-EEEEE-SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-CBTTC-EE-SSS
T ss_pred CCCEEEEcCCCcEEEeecCCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEcCCCCcccccccc
Confidence 4578899998876555522222222222334456664322 222221112357888898888887763 22211111
Q ss_pred CCceeEEEEE--CCcEEEEEecCCCeEEEEEeccCCCCC-CeeEEEEEcccccccccccccceeeeeEEeeeccCCCCCC
Q 036467 248 DKCQIEVGVF--RGEFAMFHMWREDRVEIWTMKDFGARE-SWTRMFVIGRRALINFDNYAFVHLKPVCEMMNLSNGNGKN 324 (369)
Q Consensus 248 ~~~~~~l~~~--~G~L~~~~~~~~~~~~iW~l~~~~~~~-~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (369)
....++|-.. .|+++++...+...++-|.|.+.+.+. +=+++.++.... .+-+++ . +++-+
T Consensus 157 e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~s------------Q~EGCV---V-DDe~g 220 (381)
T PF02333_consen 157 EPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGS------------QPEGCV---V-DDETG 220 (381)
T ss_dssp SEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-------------EEEEE---E-ETTTT
T ss_pred cceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCC------------cceEEE---E-ecccC
Confidence 2245555554 388998887777789999998643211 112344443322 222221 1 22357
Q ss_pred eEEEEECCCeEEEEECC
Q 036467 325 FLLIEKGDGELILYDFE 341 (369)
Q Consensus 325 ~i~~~~~~~~~~~ydl~ 341 (369)
.+|+...+..|..|+.+
T Consensus 221 ~LYvgEE~~GIW~y~Ae 237 (381)
T PF02333_consen 221 RLYVGEEDVGIWRYDAE 237 (381)
T ss_dssp EEEEEETTTEEEEEESS
T ss_pred CEEEecCccEEEEEecC
Confidence 78887766668888776
No 153
>COG5559 Uncharacterized conserved small protein [Function unknown]
Probab=20.90 E-value=59 Score=20.85 Aligned_cols=13 Identities=23% Similarity=0.605 Sum_probs=9.4
Q ss_pred CCcHHHHHHHhcc
Q 036467 1 NLPTDIITDIFTR 13 (369)
Q Consensus 1 ~LP~Dll~eIL~r 13 (369)
+|||||-+|+|-.
T Consensus 10 kLPDdLKrEvldY 22 (65)
T COG5559 10 KLPDDLKREVLDY 22 (65)
T ss_pred HCcHHHHHHHHHH
Confidence 4788888877643
No 154
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=20.31 E-value=6.9e+02 Score=23.09 Aligned_cols=197 Identities=14% Similarity=0.110 Sum_probs=0.0
Q ss_pred cEEEeeccCCceEEEEcCCccceeeCCCCCCCCCCCcccceEEEEEeeeCCCCCeEEEEEEeeeCCCcccCCCCcceEEE
Q 036467 99 LLCISDQSCNEDIFLFNPSTKKYKKLPVPEFDVPTIETTCFTSLGFGYHQADDDYKVIRSIYLYDKPFVDIDSYECEARV 178 (369)
Q Consensus 99 Ll~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~v 178 (369)
|++........+++++|..|++...+... ........+.|..+..-+..-.. ....+.+
T Consensus 204 la~~~~~~~~~~i~v~d~~~g~~~~~~~~----------~~~~~~~~~spDg~~l~~~~~~~-----------~~~~i~~ 262 (417)
T TIGR02800 204 LAYVSFESGKPEIYVQDLATGQREKVASF----------PGMNGAPAFSPDGSKLAVSLSKD-----------GNPDIYV 262 (417)
T ss_pred EEEEEcCCCCcEEEEEECCCCCEEEeecC----------CCCccceEECCCCCEEEEEECCC-----------CCccEEE
Q ss_pred EEcCCCceEEccCCCCeeeccCCcEEECce-EEEEeecCCCCCceeEEEEEECCCcceeeeCCCCCcCCCCCceeEEEEE
Q 036467 179 YSLASDKWKKINGGIPYHISSRAAVCFNEC-LIWKASRGLGRGMTVLVVAFDMNREEFKEIHRPEYKDSHDKCQIEVGVF 257 (369)
Q Consensus 179 ys~~t~~W~~~~~~~p~~~~~~~~v~~~G~-lyw~~~~~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~l~~~ 257 (369)
++.+++..+.+ .... .........-+|. +++........ .|..+|+.+..+..+...... .......-
T Consensus 263 ~d~~~~~~~~l-~~~~-~~~~~~~~s~dg~~l~~~s~~~g~~----~iy~~d~~~~~~~~l~~~~~~-----~~~~~~sp 331 (417)
T TIGR02800 263 MDLDGKQLTRL-TNGP-GIDTEPSWSPDGKSIAFTSDRGGSP----QIYMMDADGGEVRRLTFRGGY-----NASPSWSP 331 (417)
T ss_pred EECCCCCEEEC-CCCC-CCCCCEEECCCCCEEEEEECCCCCc----eEEEEECCCCCEEEeecCCCC-----ccCeEECC
Q ss_pred CCcEEEEEecCCCeEEEEEeccCCCCCCeeEEEEEcccccccccccccceeeeeEEeeeccCCCCCCeEEEEECCCe---
Q 036467 258 RGEFAMFHMWREDRVEIWTMKDFGARESWTRMFVIGRRALINFDNYAFVHLKPVCEMMNLSNGNGKNFLLIEKGDGE--- 334 (369)
Q Consensus 258 ~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--- 334 (369)
+|+..++.........|++++ ....|.+...-..... .|... .++ +.|++......
T Consensus 332 dg~~i~~~~~~~~~~~i~~~d---~~~~~~~~l~~~~~~~-----------~p~~s----pdg---~~l~~~~~~~~~~~ 390 (417)
T TIGR02800 332 DGDLIAFVHREGGGFNIAVMD---LDGGGERVLTDTGLDE-----------SPSFA----PNG---RMILYATTRGGRGV 390 (417)
T ss_pred CCCEEEEEEccCCceEEEEEe---CCCCCeEEccCCCCCC-----------CceEC----CCC---CEEEEEEeCCCcEE
Q ss_pred EEEEECCCCeEEEe
Q 036467 335 LILYDFENEIATDF 348 (369)
Q Consensus 335 ~~~ydl~~~~~~~v 348 (369)
+..++..++..+.+
T Consensus 391 l~~~~~~g~~~~~~ 404 (417)
T TIGR02800 391 LGLVSTDGRFRARL 404 (417)
T ss_pred EEEEECCCceeeEC
Done!