BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036468
(64 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis
Vinifera At 1.8 A.
pdb|2C29|F Chain F, Structure Of Dihydroflavonol Reductase From Vitis
Vinifera At 1.8 A.
pdb|2IOD|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|E Chain E, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
Length = 337
Score = 72.0 bits (175), Expect = 7e-14, Method: Composition-based stats.
Identities = 37/64 (57%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Query: 1 MSGKGKVVCVTGASGFIASWLVKLLLQRSYTVKATVRDLNN-HNAEHLLTLDGAEERLHL 59
M + + VCVTGASGFI SWLV LL+R YTV+ATVRD N +HLL L AE L L
Sbjct: 1 MGSQSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTL 60
Query: 60 FKAN 63
+KA+
Sbjct: 61 WKAD 64
>pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa
(Medicago Sativa L.)
Length = 322
Score = 56.2 bits (134), Expect = 5e-09, Method: Composition-based stats.
Identities = 27/62 (43%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 4 KGKVVCVTGASGFIASWLVKLLLQRSYTVKATVR--DLNNHNAEHLLTLDGAEERLHLFK 61
KG+V CVTG +GF+ SW++K LL+ Y+V T+R + L L GA E+LH F
Sbjct: 1 KGRV-CVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLTNLPGASEKLHFFN 59
Query: 62 AN 63
A+
Sbjct: 60 AD 61
>pdb|2RH8|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|B Chain B, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
Length = 338
Score = 54.3 bits (129), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/59 (49%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 6 KVVCVTGASGFIASWLVKLLLQRSYTVKATVRDLNNH-NAEHLLTLDGAEERLHLFKAN 63
K CV G +GF+AS LVKLLLQ+ Y V TVRD +N HLL L + L +F+A+
Sbjct: 10 KTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQELGD-LKIFRAD 67
>pdb|1UJM|A Chain A, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
pdb|1UJM|B Chain B, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
Length = 342
Score = 38.9 bits (89), Expect = 7e-04, Method: Composition-based stats.
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 4 KGKVVCVTGASGFIASWLVKLLLQRSYTVKATVR 37
+G +V VTGA+GF+AS +V+ LL+ Y V+ T R
Sbjct: 10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTAR 43
>pdb|1Y1P|A Chain A, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1Y1P|B Chain B, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1ZZE|A Chain A, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase
From Sporobolomyces Salmonicolor
pdb|1ZZE|B Chain B, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase
From Sporobolomyces Salmonicolor
Length = 342
Score = 38.9 bits (89), Expect = 8e-04, Method: Composition-based stats.
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 4 KGKVVCVTGASGFIASWLVKLLLQRSYTVKATVR 37
+G +V VTGA+GF+AS +V+ LL+ Y V+ T R
Sbjct: 10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTAR 43
>pdb|1XA0|A Chain A, Crystal Structure Of Mcsg Target Apc35536 From Bacillus
Stearothermophilus
pdb|1XA0|B Chain B, Crystal Structure Of Mcsg Target Apc35536 From Bacillus
Stearothermophilus
Length = 328
Score = 32.0 bits (71), Expect = 0.091, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 8 VCVTGASGFIASWLVKLLLQRSYTVKATVRDLNNHNAEHLLTLDGAEERL 57
V VTGA+G + S V L +R YTV+A+ H+ +L GA+E L
Sbjct: 153 VLVTGATGGVGSLAVSXLAKRGYTVEASTGKAAEHDYLRVL---GAKEVL 199
>pdb|3DHN|A Chain A, Crystal Structure Of The Putative Epimerase Q89z24_bactn
From Bacteroides Thetaiotaomicron. Northeast Structural
Genomics Consortium Target Btr310
Length = 227
Score = 30.8 bits (68), Expect = 0.22, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 4 KGKVVCVTGASGFIASWLVKLLLQRSYTVKATVR 37
K K + + GASGF+ S L+ L R + V A VR
Sbjct: 3 KVKKIVLIGASGFVGSALLNEALNRGFEVTAVVR 36
>pdb|1N7G|A Chain A, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|B Chain B, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|C Chain C, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|D Chain D, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7H|A Chain A, Crystal Structure Of Gdp-Mannose 4,6-Dehydratase Ternary
Complex With Nadph And Gdp
pdb|1N7H|B Chain B, Crystal Structure Of Gdp-Mannose 4,6-Dehydratase Ternary
Complex With Nadph And Gdp
Length = 381
Score = 30.8 bits (68), Expect = 0.22, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 6 KVVCVTGASGFIASWLVKLLLQRSYTVKATVRDLNNHNAEHL 47
K+ +TG +G S+L + LL + Y V +R +N N + +
Sbjct: 29 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRI 70
>pdb|1DB3|A Chain A, E.Coli Gdp-Mannose 4,6-Dehydratase
Length = 372
Score = 30.4 bits (67), Expect = 0.24, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 6 KVVCVTGASGFIASWLVKLLLQRSYTVKATVRDLNNHNAEHL 47
KV +TG +G S+L + LL++ Y V R ++ N E +
Sbjct: 2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERV 43
>pdb|3UN1|A Chain A, Crystal Structure Of An Oxidoreductase From
Sinorhizobium Meliloti 1021
pdb|3UN1|B Chain B, Crystal Structure Of An Oxidoreductase From
Sinorhizobium Meliloti 1021
pdb|3UN1|C Chain C, Crystal Structure Of An Oxidoreductase From
Sinorhizobium Meliloti 1021
pdb|3UN1|D Chain D, Crystal Structure Of An Oxidoreductase From
Sinorhizobium Meliloti 1021
Length = 260
Score = 29.6 bits (65), Expect = 0.44, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 6 KVVCVTGASGFIASWLVKLLLQRSYTVKATVRDL 39
KVV +TGAS I + LV+ R+Y V AT R +
Sbjct: 29 KVVVITGASQGIGAGLVRAYRDRNYRVVATSRSI 62
>pdb|1CG0|A Chain A, Structure Of Adenylosuccinate Synthetase From E. Coli
Complexed With Hadacidin, Gdp, 6-Phosphoryl-Imp, And
Mg2+
pdb|1CH8|A Chain A, Structure Of Adenylosuccinate Synthetase From E. Coli
Complexed With A Stringent Effector, Ppg2':3'p
pdb|1QF4|A Chain A, Design, Synthesis, And X-Ray Crystal Structure Of An
Enzyme Bound Bisubstrate Hybrid Inhibitor Of
Adenylosuccinate Synthetase
pdb|1QF5|A Chain A, Design, Synthesis, And X-Ray Crystal Structure Of An
Enzyme Bound Bisubstrate Hybrid Inhibitor Of
Adenylosuccinate Synthetase
pdb|1CIB|A Chain A, Structure Of Adenylosuccinate Synthetase From E. Coli
Complexed With Gdp, Imp, Hadacidin, And No3
pdb|2GCQ|A Chain A, Fully Ligated E.Coli Adenylosuccinate Synthetase With
Gtp, 2'-Deoxy- Imp And Hadacidin
pdb|1SON|A Chain A, Adenylosuccinate Synthetase In Complex With The Natural
Feedback Inhibitor Amp
pdb|1SOO|A Chain A, Adenylosuccinate Synthetase Inhibited By Hydantocidin
5'-Monophosphate
pdb|1ADE|A Chain A, Structure Of Adenylosuccinate Synthetase Ph 7 At 25
Degrees Celsius
pdb|1ADE|B Chain B, Structure Of Adenylosuccinate Synthetase Ph 7 At 25
Degrees Celsius
pdb|1ADI|A Chain A, Structure Of Adenylosuccinate Synthetase At Ph 6.5 And
25 Degrees Celsius
pdb|1ADI|B Chain B, Structure Of Adenylosuccinate Synthetase At Ph 6.5 And
25 Degrees Celsius
pdb|1HOO|A Chain A, Structure Of Guanine Nucleotide (Gppcp) Complex Of
Adenylosuccinate Synthetase From E. Coli At Ph 6.5 And
25 Degrees Celsius
pdb|1HOO|B Chain B, Structure Of Guanine Nucleotide (Gppcp) Complex Of
Adenylosuccinate Synthetase From E. Coli At Ph 6.5 And
25 Degrees Celsius
pdb|1GIM|A Chain A, Crystal Structure Of Adenylosuccinate Synthetase From
Escherichia Coli Complexed With Gdp, Imp, Hadacidin,
No3-, And Mg2+. Data Collected At 100k (Ph 6.5)
pdb|1GIN|A Chain A, Crystal Structure Of Adenylosuccinate Synthetase From
Escherichia Coli Complexed With Gdp, Imp, Hadacidin,
No3-, And Mg2+. Data Collected At 298k (Ph 6.5).
pdb|1KSZ|A Chain A, Entrapment Of 6-Thiophosphoryl-Imp In The Active Site Of
Crystalline Adenylosuccinate Synthetase From
Escherichia Coli, Data Collected At 298k
pdb|1NHT|A Chain A, Entrapment Of 6-Thiophosphoryl-Imp In The Active Site Of
Crystalline Adenylosuccinate Synthetase From
Escherichia Coli Data Collected At 100k
pdb|1JUY|A Chain A, Refined Crystal Structure Of Adenylosuccinate Synthetase
From Escherichia Coli Complexed With Hydantocidin 5'-
Phosphate Gdp, Hpo4(2-), Mg2+, And Hadacidin
Length = 431
Score = 28.9 bits (63), Expect = 0.77, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 21 LVKLLLQRSYTVKATVRDLNNHNAEHLLTLDGAEERLHL 59
+V LL +R+ K VR HNA H L ++G + LHL
Sbjct: 19 IVDLLTERA---KYVVRYQGGHNAGHTLVINGEKTVLHL 54
>pdb|1KJX|A Chain A, Imp Complex Of E. Coli Adenylosuccinate Synthetase
pdb|1KKB|A Chain A, Complex Of Escherichia Coli Adenylosuccinate Synthetase
With Imp And Hadacidin
pdb|1KKF|A Chain A, Complex Of E. Coli Adenylosuccinate Synthetase With Imp,
Hadacidin, Pyrophosphate, And Mg
Length = 432
Score = 28.9 bits (63), Expect = 0.77, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 21 LVKLLLQRSYTVKATVRDLNNHNAEHLLTLDGAEERLHL 59
+V LL +R+ K VR HNA H L ++G + LHL
Sbjct: 20 IVDLLTERA---KYVVRYQGGHNAGHTLVINGEKTVLHL 55
>pdb|1HON|A Chain A, Structure Of Guanine Nucleotide (Gppcp) Complex Of
Adenylosuccinate Synthetase From Escherichia Coli At Ph
6.5 And 25 Degree Celsius
pdb|1HON|B Chain B, Structure Of Guanine Nucleotide (Gppcp) Complex Of
Adenylosuccinate Synthetase From Escherichia Coli At Ph
6.5 And 25 Degree Celsius
pdb|1HOP|A Chain A, Structure Of Guanine Nucleotide (Gppcp) Complex Of
Adenylosuccinate Synthetase From Escherichia Coli At Ph
6.5 And 25 Degrees Celsius
pdb|1HOP|B Chain B, Structure Of Guanine Nucleotide (Gppcp) Complex Of
Adenylosuccinate Synthetase From Escherichia Coli At Ph
6.5 And 25 Degrees Celsius
Length = 431
Score = 28.9 bits (63), Expect = 0.77, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 21 LVKLLLQRSYTVKATVRDLNNHNAEHLLTLDGAEERLHL 59
+V LL +R+ K VR HNA H L ++G + LHL
Sbjct: 19 IVDLLTERA---KYVVRYQGGHNAGHTLVINGEKTVLHL 54
>pdb|1CG3|A Chain A, Structure Of The Mutant (R143l) Of Adenylosuccinate
Synthetase From E. Coli Complexed With Hadacidin, Gdp,
6-Phosphoryl-Imp, And Mg2+
Length = 431
Score = 28.9 bits (63), Expect = 0.78, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 21 LVKLLLQRSYTVKATVRDLNNHNAEHLLTLDGAEERLHL 59
+V LL +R+ K VR HNA H L ++G + LHL
Sbjct: 19 IVDLLTERA---KYVVRYQGGHNAGHTLVINGEKTVLHL 54
>pdb|1CG1|A Chain A, Structure Of The Mutant (K16q) Of Adenylosuccinate
Synthetase From E. Coli Complexed With Hadacidin, Gdp,
6-Phosphoryl-Imp, And Mg2+
Length = 431
Score = 28.9 bits (63), Expect = 0.78, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 21 LVKLLLQRSYTVKATVRDLNNHNAEHLLTLDGAEERLHL 59
+V LL +R+ K VR HNA H L ++G + LHL
Sbjct: 19 IVDLLTERA---KYVVRYQGGHNAGHTLVINGEKTVLHL 54
>pdb|1CG4|A Chain A, Structure Of The Mutant (R303l) Of Adenylosuccinate
Synthetase From E. Coli Complexed With, Gdp,
6-Phosphoryl-Imp, And Mg2+
Length = 431
Score = 28.9 bits (63), Expect = 0.78, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 21 LVKLLLQRSYTVKATVRDLNNHNAEHLLTLDGAEERLHL 59
+V LL +R+ K VR HNA H L ++G + LHL
Sbjct: 19 IVDLLTERA---KYVVRYQGGHNAGHTLVINGEKTVLHL 54
>pdb|3HID|A Chain A, Crystal Structure Of Adenylosuccinate Synthetase From
Yersinia Pestis Co92
Length = 432
Score = 28.5 bits (62), Expect = 0.91, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 17/57 (29%)
Query: 3 GKGKVVCVTGASGFIASWLVKLLLQRSYTVKATVRDLNNHNAEHLLTLDGAEERLHL 59
GKGKVV LL +R+ K VR HNA H L ++G + LHL
Sbjct: 16 GKGKVV--------------DLLTERA---KYVVRYQGGHNAGHTLVINGEKTVLHL 55
>pdb|2C54|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site.
pdb|2C54|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site
Length = 379
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 8 VCVTGASGFIASWLVKLLLQRSYTVKATVRDLNNHNAEHLL 48
+ +TGA GFIAS + + L + V A+ N H E +
Sbjct: 32 ISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMF 72
>pdb|2C59|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
With Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound
In The Active Site.
pdb|2C59|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
With Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound
In The Active Site
Length = 379
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 8 VCVTGASGFIASWLVKLLLQRSYTVKATVRDLNNHNAEHLL 48
+ +TGA GFIAS + + L + V A+ N H E +
Sbjct: 32 ISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMF 72
>pdb|2C5A|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
pdb|2C5A|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
Length = 379
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 8 VCVTGASGFIASWLVKLLLQRSYTVKATVRDLNNHNAEHLL 48
+ +TGA GFIAS + + L + V A+ N H E +
Sbjct: 32 ISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMF 72
>pdb|2C5E|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active
Site.
pdb|2C5E|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active
Site
Length = 379
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 8 VCVTGASGFIASWLVKLLLQRSYTVKATVRDLNNHNAEHLL 48
+ +TGA GFIAS + + L + V A+ N H E +
Sbjct: 32 ISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMF 72
>pdb|1WVG|A Chain A, Structure Of Cdp-D-Glucose 4,6-Dehydratase From
Salmonella Typhi
pdb|1WVG|B Chain B, Structure Of Cdp-D-Glucose 4,6-Dehydratase From
Salmonella Typhi
Length = 359
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 4 KGKVVCVTGASGFIASWLVKLLLQRSYTVKATVRD 38
+GK V VTG +GF SWL L + VK D
Sbjct: 8 QGKRVFVTGHTGFKGSWLSLWLTEMGAIVKGYALD 42
>pdb|2Z1M|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
Length = 345
Score = 26.9 bits (58), Expect = 3.2, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 5 GKVVCVTGASGFIASWLVKLLLQRSYTVKATVR 37
GK +TG G ++L KLLL++ Y V R
Sbjct: 3 GKRALITGIRGQDGAYLAKLLLEKGYEVYGADR 35
>pdb|3E9N|A Chain A, Crystal Structure Of A Putative Short-Chain
DehydrogenaseREDUCTASE FROM CORYNEBACTERIUM GLUTAMICUM
pdb|3E9N|B Chain B, Crystal Structure Of A Putative Short-Chain
DehydrogenaseREDUCTASE FROM CORYNEBACTERIUM GLUTAMICUM
pdb|3E9N|C Chain C, Crystal Structure Of A Putative Short-Chain
DehydrogenaseREDUCTASE FROM CORYNEBACTERIUM GLUTAMICUM
pdb|3E9N|D Chain D, Crystal Structure Of A Putative Short-Chain
DehydrogenaseREDUCTASE FROM CORYNEBACTERIUM GLUTAMICUM
pdb|3E9N|E Chain E, Crystal Structure Of A Putative Short-Chain
DehydrogenaseREDUCTASE FROM CORYNEBACTERIUM GLUTAMICUM
pdb|3E9N|F Chain F, Crystal Structure Of A Putative Short-Chain
DehydrogenaseREDUCTASE FROM CORYNEBACTERIUM GLUTAMICUM
pdb|3E9N|G Chain G, Crystal Structure Of A Putative Short-Chain
DehydrogenaseREDUCTASE FROM CORYNEBACTERIUM GLUTAMICUM
pdb|3E9N|H Chain H, Crystal Structure Of A Putative Short-Chain
DehydrogenaseREDUCTASE FROM CORYNEBACTERIUM GLUTAMICUM
Length = 245
Score = 26.6 bits (57), Expect = 3.7, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 1 MSGKGKVVCVTGASGFIASWLVKLLLQRSYTVKATVRDLNNHNAEHLLTL 50
MS K K+ VTGA+G + +VK L R + V A R N EHL L
Sbjct: 1 MSLKKKIAVVTGATGGMGIEIVK-DLSRDHIVYALGR-----NPEHLAAL 44
>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|B Chain B, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|C Chain C, Structure Of Udp-Galactose 4-Epimerase Mutant
Length = 308
Score = 26.6 bits (57), Expect = 3.8, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 8 VCVTGASGFIASWLVKLLLQRSYTV 32
+ VTG +GFI S LV L++ Y V
Sbjct: 3 IVVTGGAGFIGSHLVDKLVELGYEV 27
>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
pdb|3KO8|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
Length = 312
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 8 VCVTGASGFIASWLVKLLLQRSYTV 32
+ VTG +GFI S LV L++ Y V
Sbjct: 3 IVVTGGAGFIGSHLVDKLVELGYEV 27
>pdb|4DQV|A Chain A, Crystal Structure Of Reductase (R) Domain Of
Non-Ribosomal Peptide Synthetase From Mycobacterium
Tuberculosis
Length = 478
Score = 26.6 bits (57), Expect = 4.1, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 6 KVVCVTGASGFIASWLVKLLLQR 28
+ V +TGA+GF+ +LV LL+R
Sbjct: 74 RTVLLTGATGFLGRYLVLELLRR 96
>pdb|1RKX|A Chain A, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|B Chain B, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|C Chain C, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|D Chain D, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
Length = 357
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
Query: 4 KGKVVCVTGASGFIASWLVKLLLQRSYTVKATVR 37
+GK V VTG +GF WL L LQ T+ ATV+
Sbjct: 8 QGKRVFVTGHTGFKGGWL-SLWLQ---TMGATVK 37
>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5U|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5U|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5U|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5Y|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8
Udp-glucose 4- Epimerase Complex With Nad
Length = 311
Score = 26.2 bits (56), Expect = 4.8, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 8 VCVTGASGFIASWLVKLLLQRSYTV 32
V VTG +GFI S +V+ LL R V
Sbjct: 3 VLVTGGAGFIGSHIVEDLLARGLEV 27
>pdb|1RPN|A Chain A, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|B Chain B, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|C Chain C, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|D Chain D, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
Length = 335
Score = 26.2 bits (56), Expect = 4.9, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 10 VTGASGFIASWLVKLLLQRSYTVKATV 36
VTG +G ++L KLLL++ Y V V
Sbjct: 19 VTGITGQDGAYLAKLLLEKGYRVHGLV 45
>pdb|2X6T|A Chain A, Agme Bound To Adp-B-Mannose
pdb|2X6T|B Chain B, Agme Bound To Adp-B-Mannose
pdb|2X6T|C Chain C, Agme Bound To Adp-B-Mannose
pdb|2X6T|D Chain D, Agme Bound To Adp-B-Mannose
pdb|2X6T|E Chain E, Agme Bound To Adp-B-Mannose
pdb|2X6T|F Chain F, Agme Bound To Adp-B-Mannose
pdb|2X6T|G Chain G, Agme Bound To Adp-B-Mannose
pdb|2X6T|H Chain H, Agme Bound To Adp-B-Mannose
pdb|2X6T|I Chain I, Agme Bound To Adp-B-Mannose
pdb|2X6T|J Chain J, Agme Bound To Adp-B-Mannose
pdb|2X86|A Chain A, Agme Bound To Adp-b-mannose
pdb|2X86|B Chain B, Agme Bound To Adp-b-mannose
pdb|2X86|C Chain C, Agme Bound To Adp-b-mannose
pdb|2X86|D Chain D, Agme Bound To Adp-b-mannose
pdb|2X86|E Chain E, Agme Bound To Adp-b-mannose
pdb|2X86|F Chain F, Agme Bound To Adp-b-mannose
pdb|2X86|G Chain G, Agme Bound To Adp-b-mannose
pdb|2X86|H Chain H, Agme Bound To Adp-b-mannose
pdb|2X86|I Chain I, Agme Bound To Adp-b-mannose
pdb|2X86|J Chain J, Agme Bound To Adp-b-mannose
pdb|2X86|K Chain K, Agme Bound To Adp-b-mannose
pdb|2X86|L Chain L, Agme Bound To Adp-b-mannose
pdb|2X86|M Chain M, Agme Bound To Adp-b-mannose
pdb|2X86|N Chain N, Agme Bound To Adp-b-mannose
pdb|2X86|O Chain O, Agme Bound To Adp-b-mannose
pdb|2X86|P Chain P, Agme Bound To Adp-b-mannose
pdb|2X86|Q Chain Q, Agme Bound To Adp-b-mannose
pdb|2X86|R Chain R, Agme Bound To Adp-b-mannose
pdb|2X86|S Chain S, Agme Bound To Adp-b-mannose
pdb|2X86|T Chain T, Agme Bound To Adp-b-mannose
Length = 357
Score = 25.4 bits (54), Expect = 7.5, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 6 KVVCVTGASGFIASWLVKLLLQRSYTVKATVRDLNN 41
+++ VTG +GFI S +VK L + T V +L +
Sbjct: 47 RMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKD 82
>pdb|1XG5|A Chain A, Structure Of Human Putative Dehydrogenase Mgc4172 In
Complex With Nadp
pdb|1XG5|B Chain B, Structure Of Human Putative Dehydrogenase Mgc4172 In
Complex With Nadp
pdb|1XG5|C Chain C, Structure Of Human Putative Dehydrogenase Mgc4172 In
Complex With Nadp
pdb|1XG5|D Chain D, Structure Of Human Putative Dehydrogenase Mgc4172 In
Complex With Nadp
Length = 279
Score = 25.4 bits (54), Expect = 8.0, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 4 KGKVVCVTGASGFIASWLVKLLLQRSYTVKATVRDLNN 41
+ ++ VTGASG I + + + L+Q+ V R + N
Sbjct: 31 RDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGN 68
>pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose
MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces
Cerevisiae Complexed With Nad, Udp-Glucose, And
Galactose
Length = 699
Score = 25.4 bits (54), Expect = 8.3, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 6 KVVCVTGASGFIASWLVKLLLQRSY 30
K+V VTG +G+I S V L++ Y
Sbjct: 12 KIVLVTGGAGYIGSHTVVELIENGY 36
>pdb|3U09|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)
Reductase (Fabg)(G92d) From Vibrio Cholerae
pdb|3U09|B Chain B, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)
Reductase (Fabg)(G92d) From Vibrio Cholerae
Length = 251
Score = 25.4 bits (54), Expect = 8.7, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 1 MSGKGKVVCVTGASGFIASWLVKLLLQRSYTVKAT 35
M+ +GKV VTGAS I + +LL +R V T
Sbjct: 8 MNLEGKVALVTGASRGIGKAIAELLAERGAKVIGT 42
>pdb|3TZC|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)
Reductase (Fabg)(Y155f) From Vibrio Cholerae
pdb|3TZC|B Chain B, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)
Reductase (Fabg)(Y155f) From Vibrio Cholerae
pdb|3TZC|C Chain C, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)
Reductase (Fabg)(Y155f) From Vibrio Cholerae
pdb|3TZC|D Chain D, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)
Reductase (Fabg)(Y155f) From Vibrio Cholerae
Length = 251
Score = 25.4 bits (54), Expect = 9.0, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 1 MSGKGKVVCVTGASGFIASWLVKLLLQRSYTVKAT 35
M+ +GKV VTGAS I + +LL +R V T
Sbjct: 8 MNLEGKVALVTGASRGIGKAIAELLAERGAKVIGT 42
>pdb|3RSH|A Chain A, Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)reductase
(Fabg) From Vibrio Cholerae O1 Complexed With Nadp+
(Space Group P62)
pdb|3RSH|B Chain B, Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)reductase
(Fabg) From Vibrio Cholerae O1 Complexed With Nadp+
(Space Group P62)
pdb|3RRO|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)
Reductase (Fabg) From Vibrio Cholerae
pdb|3RRO|B Chain B, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)
Reductase (Fabg) From Vibrio Cholerae
pdb|4I08|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acyl Carrier Protein
Reductase (Fabg) From Vibrio Cholerae In Complex With
Nadph
pdb|4I08|B Chain B, Crystal Structure Of Beta-Ketoacyl-Acyl Carrier Protein
Reductase (Fabg) From Vibrio Cholerae In Complex With
Nadph
Length = 251
Score = 25.4 bits (54), Expect = 9.0, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 1 MSGKGKVVCVTGASGFIASWLVKLLLQRSYTVKAT 35
M+ +GKV VTGAS I + +LL +R V T
Sbjct: 8 MNLEGKVALVTGASRGIGKAIAELLAERGAKVIGT 42
>pdb|3GDF|A Chain A, Crystal Structure Of The Nadp-Dependent Mannitol
Dehydrogenase From Cladosporium Herbarum.
pdb|3GDF|B Chain B, Crystal Structure Of The Nadp-Dependent Mannitol
Dehydrogenase From Cladosporium Herbarum.
pdb|3GDF|C Chain C, Crystal Structure Of The Nadp-Dependent Mannitol
Dehydrogenase From Cladosporium Herbarum.
pdb|3GDF|D Chain D, Crystal Structure Of The Nadp-Dependent Mannitol
Dehydrogenase From Cladosporium Herbarum.
pdb|3GDG|A Chain A, Crystal Structure Of The Nadp-Dependent Mannitol
Dehydrogenase From Cladosporium Herbarum.
pdb|3GDG|B Chain B, Crystal Structure Of The Nadp-Dependent Mannitol
Dehydrogenase From Cladosporium Herbarum.
pdb|3GDG|C Chain C, Crystal Structure Of The Nadp-Dependent Mannitol
Dehydrogenase From Cladosporium Herbarum.
pdb|3GDG|D Chain D, Crystal Structure Of The Nadp-Dependent Mannitol
Dehydrogenase From Cladosporium Herbarum
Length = 267
Score = 25.4 bits (54), Expect = 9.0, Method: Composition-based stats.
Identities = 12/15 (80%), Positives = 13/15 (86%)
Query: 1 MSGKGKVVCVTGASG 15
+S KGKVV VTGASG
Sbjct: 16 LSLKGKVVVVTGASG 30
>pdb|3TZK|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)
Reductase (Fabg)(G92a) From Vibrio Cholerae
pdb|3TZK|B Chain B, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)
Reductase (Fabg)(G92a) From Vibrio Cholerae
Length = 251
Score = 25.4 bits (54), Expect = 9.0, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 1 MSGKGKVVCVTGASGFIASWLVKLLLQRSYTVKAT 35
M+ +GKV VTGAS I + +LL +R V T
Sbjct: 8 MNLEGKVALVTGASRGIGKAIAELLAERGAKVIGT 42
>pdb|3U9L|A Chain A, The Crystal Structure Of
3-Oxoacyl-[acyl-Carrier-Protein] Reductase (Nadph) From
Sinorhizobium Meliloti
Length = 324
Score = 25.4 bits (54), Expect = 9.2, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 6 KVVCVTGASGFIASWLVKLLLQRSYTVKATVRDLNNHNAEHLLTLDG 52
K++ +TGAS + L + V A+ RD+ NA ++ + G
Sbjct: 6 KIILITGASSGFGRLTAEALAGAGHRVYASXRDIVGRNASNVEAIAG 52
>pdb|3TZH|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)
Reductase (Fabg)(F187a) From Vibrio Cholerae
pdb|3TZH|B Chain B, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)
Reductase (Fabg)(F187a) From Vibrio Cholerae
pdb|3TZH|C Chain C, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)
Reductase (Fabg)(F187a) From Vibrio Cholerae
pdb|3TZH|D Chain D, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)
Reductase (Fabg)(F187a) From Vibrio Cholerae
pdb|3TZH|E Chain E, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)
Reductase (Fabg)(F187a) From Vibrio Cholerae
pdb|3TZH|F Chain F, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)
Reductase (Fabg)(F187a) From Vibrio Cholerae
Length = 251
Score = 25.4 bits (54), Expect = 9.2, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 1 MSGKGKVVCVTGASGFIASWLVKLLLQRSYTVKAT 35
M+ +GKV VTGAS I + +LL +R V T
Sbjct: 8 MNLEGKVALVTGASRGIGKAIAELLAERGAKVIGT 42
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,835,430
Number of Sequences: 62578
Number of extensions: 51517
Number of successful extensions: 264
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 223
Number of HSP's gapped (non-prelim): 46
length of query: 64
length of database: 14,973,337
effective HSP length: 35
effective length of query: 29
effective length of database: 12,783,107
effective search space: 370710103
effective search space used: 370710103
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)