Query 036469
Match_columns 171
No_of_seqs 141 out of 1129
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 02:25:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036469.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036469hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00689 Cation_ATPase_C: Cati 100.0 5.3E-35 1.1E-39 220.0 15.1 156 1-157 16-182 (182)
2 TIGR01522 ATPase-IIA2_Ca golgi 100.0 6.7E-29 1.5E-33 224.8 17.1 159 1-161 722-883 (884)
3 KOG0202 Ca2+ transporting ATPa 100.0 8E-30 1.7E-34 221.6 5.6 160 1-161 782-969 (972)
4 TIGR01523 ATPase-IID_K-Na pota 100.0 5.6E-28 1.2E-32 221.3 16.0 159 1-161 855-1048(1053)
5 TIGR01116 ATPase-IIA1_Ca sarco 100.0 1.1E-27 2.3E-32 217.6 17.2 158 1-159 734-917 (917)
6 TIGR01517 ATPase-IIB_Ca plasma 99.9 7.6E-27 1.6E-31 212.6 16.8 158 1-158 773-939 (941)
7 KOG0204 Calcium transporting A 99.9 1.2E-27 2.7E-32 208.1 4.9 165 1-165 843-1013(1034)
8 TIGR01106 ATPase-IIC_X-K sodiu 99.9 3.2E-24 6.8E-29 196.3 17.5 160 1-161 788-986 (997)
9 KOG0203 Na+/K+ ATPase, alpha s 99.9 1E-22 2.2E-27 177.6 4.4 161 1-162 810-1009(1019)
10 PRK15122 magnesium-transportin 99.9 1E-20 2.2E-25 171.7 15.7 152 1-161 741-898 (903)
11 TIGR01524 ATPase-IIIB_Mg magne 99.8 1.2E-17 2.7E-22 151.4 15.2 148 1-161 706-863 (867)
12 PRK10517 magnesium-transportin 99.8 1.1E-17 2.3E-22 152.1 14.2 146 1-160 741-897 (902)
13 COG0474 MgtA Cation transport 99.7 1E-16 2.2E-21 146.0 16.3 155 1-156 744-912 (917)
14 TIGR01657 P-ATPase-V P-type AT 99.3 9.9E-12 2.2E-16 115.2 11.6 133 1-139 901-1049(1054)
15 TIGR01647 ATPase-IIIA_H plasma 98.9 2.6E-08 5.5E-13 89.9 11.9 108 1-119 637-752 (755)
16 TIGR01652 ATPase-Plipid phosph 98.0 0.00011 2.4E-09 68.9 12.2 154 1-164 875-1050(1057)
17 KOG0210 P-type ATPase [Inorgan 91.7 1.2 2.5E-05 40.5 8.2 91 67-168 956-1048(1051)
18 KOG0209 P-type ATPase [Inorgan 88.0 23 0.00051 33.2 14.0 149 10-165 987-1155(1160)
19 PF06570 DUF1129: Protein of u 82.0 20 0.00044 27.3 12.3 27 16-43 60-86 (206)
20 KOG0208 Cation transport ATPas 72.1 12 0.00025 35.5 6.1 144 5-153 956-1115(1140)
21 PLN03190 aminophospholipid tra 70.6 1.1E+02 0.0024 29.9 13.8 28 26-53 1009-1036(1178)
22 PF10183 ESSS: ESSS subunit of 60.6 37 0.00081 23.1 5.6 42 12-54 36-77 (105)
23 PF11804 DUF3325: Protein of u 54.0 23 0.00051 24.2 3.7 24 3-26 11-34 (106)
24 PF13829 DUF4191: Domain of un 47.7 1.2E+02 0.0026 23.8 7.1 41 78-128 10-50 (224)
25 TIGR00383 corA magnesium Mg(2+ 43.6 74 0.0016 25.6 5.7 24 137-160 292-315 (318)
26 PF06609 TRI12: Fungal trichot 38.4 3E+02 0.0066 24.8 14.1 99 35-133 235-347 (599)
27 PF05297 Herpes_LMP1: Herpesvi 36.9 11 0.00025 30.6 0.0 8 20-27 13-20 (381)
28 PF10856 DUF2678: Protein of u 35.8 23 0.0005 24.7 1.4 62 105-166 30-91 (118)
29 PRK05470 fumarate reductase su 34.1 93 0.002 21.8 4.1 13 19-31 1-13 (118)
30 KOG2802 Membrane protein HUEL 33.7 2.5E+02 0.0054 24.1 7.2 81 78-158 247-341 (503)
31 COG4280 Predicted membrane pro 30.8 1.9E+02 0.0042 22.4 5.7 53 106-160 37-89 (236)
32 PF11460 DUF3007: Protein of u 30.1 1.4E+02 0.0031 20.4 4.4 47 118-164 18-65 (104)
33 PRK11085 magnesium/nickel/coba 29.9 1.4E+02 0.0031 24.5 5.3 8 13-20 157-164 (316)
34 PF12725 DUF3810: Protein of u 28.9 76 0.0017 26.1 3.6 31 122-152 13-43 (318)
35 PRK06231 F0F1 ATP synthase sub 26.8 1.1E+02 0.0023 23.5 3.8 28 93-120 38-65 (205)
36 COG0598 CorA Mg2+ and Co2+ tra 24.0 1.6E+02 0.0034 24.0 4.6 23 138-160 297-319 (322)
37 KOG3744 Uncharacterized conser 23.5 1.2E+02 0.0026 24.2 3.5 30 129-158 49-78 (311)
38 PF08552 Kei1: Inositolphospho 22.8 3.4E+02 0.0075 20.5 6.2 55 110-165 12-72 (189)
39 PF04531 Phage_holin_1: Bacter 22.0 1.1E+02 0.0024 19.9 2.7 18 99-116 7-24 (84)
40 PRK09546 zntB zinc transporter 21.6 2.5E+02 0.0053 22.8 5.3 6 124-129 281-286 (324)
41 PF14316 DUF4381: Domain of un 21.1 1.3E+02 0.0028 21.5 3.2 13 130-142 17-29 (146)
42 PF11286 DUF3087: Protein of u 21.1 3.4E+02 0.0073 20.2 5.3 9 121-129 35-43 (165)
No 1
>PF00689 Cation_ATPase_C: Cation transporting ATPase, C-terminus; InterPro: IPR006068 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved C-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3A3Y_A 2ZXE_A 2XZB_A 3B9B_A 3N5K_A 3FPS_A 3B9R_A 1WPG_C 2AGV_A 2O9J_A ....
Probab=100.00 E-value=5.3e-35 Score=220.01 Aligned_cols=156 Identities=37% Similarity=0.590 Sum_probs=133.1
Q ss_pred CchhhhhhhccCCCCccCcCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccc-------hhhHHHH
Q 036469 1 MDTLGALALATEQPTNDLMSKPPVGRSEPLITKLMWRNLIPQAIYQVAILLTLQFKGRSIFGVQES-------AKDTMIF 73 (171)
Q Consensus 1 ~D~~palaL~~ep~~~~~M~r~Pr~~~~~ll~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~g~~~~-------~a~T~~F 73 (171)
+|++||++++.||+|+|+|+||||+++|++++++++.+++.+|+.++++++..|+......|.+.+ ++||++|
T Consensus 16 ~d~~~a~al~~e~~~~~im~r~Pr~~~~~l~~~~~~~~i~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~a~T~~F 95 (182)
T PF00689_consen 16 TDLLPALALGFEPPDPDIMKRPPRDPNEPLINKRLLRRILIQGLIMAAACFFAFFLGLYIFGWDEETNNDNLAQAQTMAF 95 (182)
T ss_dssp TTHHHHHHGGGSS-STTGGGS---TTTS-SSSHHHHHHHCCHHHHHHHHHHHHHHHHHHSTCSSSHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhcCcchhhhhhccccccchhhccHHhHhHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHH
Confidence 699999999999999999999999999999999999999999999999999999877654454443 4999999
Q ss_pred HHHHHHHHHHHHhhhcCCcccccc--ccccCHHHHHHHHHHHHHHHHHH--HhhhhhhccccCChhHHHHHHHHHHHHHH
Q 036469 74 NTFVFCQIFNEFNARKLEKKNIFK--GIHKNKLFLAIIGITIVLQLIMV--EFLKKFADTERLNWGQWAACIGIAAMSWP 149 (171)
Q Consensus 74 ~~lv~~q~~~~~~~R~~~~~~~~~--~~~~N~~l~~~~~~~~~l~~~~v--~~l~~~f~~~~l~~~~w~~~~~~~~~~~~ 149 (171)
++++++|++|++++|+. +++.++ +.++|++++.++++++++|++++ |+++++|++.|+++.+|+++++.++..++
T Consensus 96 ~~lv~~q~~~~~~~r~~-~~~~~~~~~~~~N~~l~~~~~~~~~l~~~i~~~P~~~~~f~~~~l~~~~w~~~l~~~~~~~~ 174 (182)
T PF00689_consen 96 TALVLSQLFNAFNCRSR-RRSVFRFRGIFSNKWLLIAILISIALQILIVYVPGLNRIFGTAPLPLWQWLICLALALLPFI 174 (182)
T ss_dssp HHHHHHHHHHHHHTSSS-SSTCTT-STGGGSHHHHHHHHHHHHHHHHHHHSTTHHHHST----THHHHHCHHHHHCHHHH
T ss_pred HHHHHHHHhhhcccccc-cccceecccccccchHHHHHHHHHHHHHHHhcchhhHhhhcccCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999996 456654 78899999999999999999876 46999999999999999999999999999
Q ss_pred HHHHHHhc
Q 036469 150 IGFLFKCI 157 (171)
Q Consensus 150 ~~e~~K~i 157 (171)
+.|++|++
T Consensus 175 ~~ei~K~i 182 (182)
T PF00689_consen 175 VDEIRKLI 182 (182)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHC
Confidence 99999985
No 2
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=99.96 E-value=6.7e-29 Score=224.80 Aligned_cols=159 Identities=28% Similarity=0.373 Sum_probs=141.8
Q ss_pred CchhhhhhhccCCCCccCcCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccchhhHHHHHHHHHHH
Q 036469 1 MDTLGALALATEQPTNDLMSKPPVGRSEPLITKLMWRNLIPQAIYQVAILLTLQFKGRSIFGVQESAKDTMIFNTFVFCQ 80 (171)
Q Consensus 1 ~D~~palaL~~ep~~~~~M~r~Pr~~~~~ll~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~g~~~~~a~T~~F~~lv~~q 80 (171)
+|.+||++|++||||+++|+||||+++++++++.++.+++++|+++++++++.|.+... .+....+++|++|++++++|
T Consensus 722 ~d~~~a~~l~~e~~~~~~m~~~P~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~t~~f~~~v~~q 800 (884)
T TIGR01522 722 MDGPPAQSLGVEPVDKDVMRKPPRPRNDKILTKDLIKKILVSAIIIVVGTLFVFVREMQ-DGVITARDTTMTFTCFVFFD 800 (884)
T ss_pred HHhhHHHHhccCCCChhHhhCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCcchhhHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999998888877765432 12224568999999999999
Q ss_pred HHHHHhhhcCCcccccc-ccccCHHHHHHHHHHHHHHHHHH--HhhhhhhccccCChhHHHHHHHHHHHHHHHHHHHHhc
Q 036469 81 IFNEFNARKLEKKNIFK-GIHKNKLFLAIIGITIVLQLIMV--EFLKKFADTERLNWGQWAACIGIAAMSWPIGFLFKCI 157 (171)
Q Consensus 81 ~~~~~~~R~~~~~~~~~-~~~~N~~l~~~~~~~~~l~~~~v--~~l~~~f~~~~l~~~~w~~~~~~~~~~~~~~e~~K~i 157 (171)
++|.+++|+. +.++|+ +.++|++++.++++++++|++++ |+++++|++.|+++.+|+++++.++..+++.|++|++
T Consensus 801 ~~~~~~~r~~-~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~p~~~~~f~~~~l~~~~w~~~~~~~~~~~~~~~~~k~~ 879 (884)
T TIGR01522 801 MFNALACRSQ-TKSVFEIGFFSNRMFNYAVGGSIIGQLLVIYFPPLQSVFQTEALSIKDLLFLLLITSSVCIVDEIRKKV 879 (884)
T ss_pred HHHHHHHccC-CccccccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999996 567775 77899999999999999998776 5799999999999999999999999999999999999
Q ss_pred cccc
Q 036469 158 PVSG 161 (171)
Q Consensus 158 ~r~~ 161 (171)
+|++
T Consensus 880 ~~~~ 883 (884)
T TIGR01522 880 ERSR 883 (884)
T ss_pred Hhhc
Confidence 8765
No 3
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=99.96 E-value=8e-30 Score=221.61 Aligned_cols=160 Identities=22% Similarity=0.275 Sum_probs=142.7
Q ss_pred CchhhhhhhccCCCCccCcCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC-----------------
Q 036469 1 MDTLGALALATEQPTNDLMSKPPVGRSEPLITKLMWRNLIPQAIYQVAILLTLQFKGRSIFGV----------------- 63 (171)
Q Consensus 1 ~D~~palaL~~ep~~~~~M~r~Pr~~~~~ll~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~g~----------------- 63 (171)
||++||.+||+||+|+|+|+||||+++++++++..+.+++..|.+++++++++|.+.+...+.
T Consensus 782 tDG~PA~aLG~ep~D~DiM~kpPR~~~~~iit~~l~~r~l~~g~~vg~~Tv~~f~~~~~~~~~~vt~~~~~~~~~c~~~~ 861 (972)
T KOG0202|consen 782 TDGPPATALGFEPVDPDIMKKPPRDSKDGIITGWLIFRYLAIGIIVGVATVGVFVWWMYGADGKVTYRQLAHYNSCCRDF 861 (972)
T ss_pred ccCCchhhcCCCCCChhHHhCCCCCCCCCeeeHHHHHHHHHhheeeeeeEhHhhhHHHhcCCCCcChhhhcchhhhcccc
Confidence 799999999999999999999999999999999999999999999999999888766542111
Q ss_pred --------ccchhhHHHHHHHHHHHHHHHHhhhcCCcccccc-ccccCHHHHHHHHHHHHHHHHHH--HhhhhhhccccC
Q 036469 64 --------QESAKDTMIFNTFVFCQIFNEFNARKLEKKNIFK-GIHKNKLFLAIIGITIVLQLIMV--EFLKKFADTERL 132 (171)
Q Consensus 64 --------~~~~a~T~~F~~lv~~q~~~~~~~R~~~~~~~~~-~~~~N~~l~~~~~~~~~l~~~~v--~~l~~~f~~~~l 132 (171)
....+.||+|+.+|+..++|+++|||. ..++|. ++++|+|+.+++++++++|++++ |+++++|+++||
T Consensus 862 ~~~~c~~F~~~~~~tMa~tv~V~~emfNaL~~~se-~~slf~~~~~~N~~l~~ai~~S~~~~f~ilYvp~l~~iFq~~~l 940 (972)
T KOG0202|consen 862 YGSRCAVFEDMCPLTMALTVLVFIEMFNALNCLSE-NKSLFTMPPWSNRWLLWAIALSFVLHFLVLYVPPLQRIFQTEPL 940 (972)
T ss_pred cccchhhhcccccceEEEeehhHHHHHHHhhcccC-CcceEEecccccHHHHHHHHHHHHhhheEEEechhhhhheecCC
Confidence 012455999999999999999999998 456665 89999999999999999998765 689999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHhccccc
Q 036469 133 NWGQWAACIGIAAMSWPIGFLFKCIPVSG 161 (171)
Q Consensus 133 ~~~~w~~~~~~~~~~~~~~e~~K~i~r~~ 161 (171)
++.||+..+.+++.+++++|++|++.|+.
T Consensus 941 ~~~ew~~vl~~s~~V~i~dEilK~~~R~~ 969 (972)
T KOG0202|consen 941 SLAEWLLVLAISSPVIIVDEILKFIARNY 969 (972)
T ss_pred cHHHHHHHHHHhhhhhhHHHHHHHHHHhc
Confidence 99999999999999999999999999854
No 4
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=99.96 E-value=5.6e-28 Score=221.28 Aligned_cols=159 Identities=15% Similarity=0.222 Sum_probs=137.1
Q ss_pred CchhhhhhhccCCCCccCcCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhhc--C--------------Cc
Q 036469 1 MDTLGALALATEQPTNDLMSKPPVGRSEPLITKLMWRNLIPQAIYQVAILLTLQFKGRSIF--G--------------VQ 64 (171)
Q Consensus 1 ~D~~palaL~~ep~~~~~M~r~Pr~~~~~ll~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~--g--------------~~ 64 (171)
||++|+++|++||+|+|+|+||||+++++++++.++.+++.+|++++++++.+|++.++.. | .+
T Consensus 855 ~d~~palaL~~e~~~~~~m~~~Pr~~~~~l~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 934 (1053)
T TIGR01523 855 TSCFPAMGLGLEKAAPDLMDRLPHDNEVGIFQKELIIDMFAYGFFLGGSCLASFTGILYGFGSGNLGHDCDAHYHAGCND 934 (1053)
T ss_pred HHHHHHHhhccCCCChhHHhcCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccccccccccccc
Confidence 5899999999999999999999999999999999999999999999999888876432110 1 02
Q ss_pred cchhhHHHHHHHHHHHHHHHHhhhcCCcccccc----------------ccccCHHHHHHHHHHHHHHHHHH--Hhhhh-
Q 036469 65 ESAKDTMIFNTFVFCQIFNEFNARKLEKKNIFK----------------GIHKNKLFLAIIGITIVLQLIMV--EFLKK- 125 (171)
Q Consensus 65 ~~~a~T~~F~~lv~~q~~~~~~~R~~~~~~~~~----------------~~~~N~~l~~~~~~~~~l~~~~v--~~l~~- 125 (171)
..+|||++|.+++++|++|+++||+. +.++|+ +.++|++++++++++++++++++ |++|+
T Consensus 935 ~~~a~t~~f~~l~~~~~~~~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~N~~l~~~~~~~~~l~~~~~~~p~~~~~ 1013 (1053)
T TIGR01523 935 VFKARSAAFATMTFCALILAVEVKDF-DNSFFNLHGIPDGDSNFKEFFHSIVENKFLAWAIAFAAVSAFPTIYIPVINDD 1013 (1053)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhcC-chhhhhcCccccccccccccccCCccCHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 34689999999999999999999997 456553 25799999999999999998765 68886
Q ss_pred hhccccCChhHHHHHHHHHHHHHHHHHHHHhccccc
Q 036469 126 FADTERLNWGQWAACIGIAAMSWPIGFLFKCIPVSG 161 (171)
Q Consensus 126 ~f~~~~l~~~~w~~~~~~~~~~~~~~e~~K~i~r~~ 161 (171)
+|++.|+++ +|++++++++.++++.|++|+++|+.
T Consensus 1014 ~f~~~~l~~-~w~~~~~~~~~~~~~~e~~K~~~r~~ 1048 (1053)
T TIGR01523 1014 VFKHKPIGA-EWGLAAAATIAFFFGAEIWKCGKRRL 1048 (1053)
T ss_pred hhccCCcch-HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999996 99999999999999999999997654
No 5
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=99.95 E-value=1.1e-27 Score=217.61 Aligned_cols=158 Identities=21% Similarity=0.316 Sum_probs=139.2
Q ss_pred CchhhhhhhccCCCCccCcCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC-----------------
Q 036469 1 MDTLGALALATEQPTNDLMSKPPVGRSEPLITKLMWRNLIPQAIYQVAILLTLQFKGRSIFGV----------------- 63 (171)
Q Consensus 1 ~D~~palaL~~ep~~~~~M~r~Pr~~~~~ll~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~g~----------------- 63 (171)
+|++|+++|+.||+|+++|+||||++++++++++++.+++.+|++++++++..|.+.....|.
T Consensus 734 ~d~lp~~~l~~~~~~~~~m~~pP~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 813 (917)
T TIGR01116 734 TDGLPATALGFNPPDKDIMWKPPRRPDEPLITGWLFFRYLVVGVYVGLATVGGFVWWYLLTHFTGCDEDSFTTCPDFEDP 813 (917)
T ss_pred HHHHHHHHHhcCCcchhHhcCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccccccccccccc
Confidence 589999999999999999999999999999999999999999999998877776543221111
Q ss_pred ------ccchhhHHHHHHHHHHHHHHHHhhhcCCcccccc-ccccCHHHHHHHHHHHHHHHHH--HHhhhhhhccccCCh
Q 036469 64 ------QESAKDTMIFNTFVFCQIFNEFNARKLEKKNIFK-GIHKNKLFLAIIGITIVLQLIM--VEFLKKFADTERLNW 134 (171)
Q Consensus 64 ------~~~~a~T~~F~~lv~~q~~~~~~~R~~~~~~~~~-~~~~N~~l~~~~~~~~~l~~~~--v~~l~~~f~~~~l~~ 134 (171)
+..++||++|++++++|++|.++||+. +.++|+ +.++|++++.++++++++|+++ +|+++++|++.|+++
T Consensus 814 ~~~~~~~~~~~~t~~f~~~v~~q~~~~~~~r~~-~~~~~~~~~~~n~~~~~~~~~~~~l~~~~~~v~~~~~~f~~~~l~~ 892 (917)
T TIGR01116 814 DCYVFEGKQPARTISLSVLVVIEMFNALNALSE-DQSLLRMPPWVNKWLIGAICLSMALHFLILYVPFLSRIFGVTPLSL 892 (917)
T ss_pred cccccccccchHHHHHHHHHHHHHHHHHHHcCC-cccccccCCccCHHHHHHHHHHHHHHHHHHHhHHHHHHhccCCCCH
Confidence 134689999999999999999999996 567775 6789999999999999999887 578999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccc
Q 036469 135 GQWAACIGIAAMSWPIGFLFKCIPV 159 (171)
Q Consensus 135 ~~w~~~~~~~~~~~~~~e~~K~i~r 159 (171)
.+|++++++++..+++.|++|+++|
T Consensus 893 ~~w~~~~~~~~~~~~~~e~~k~~~~ 917 (917)
T TIGR01116 893 TDWLMVLKLSLPVILVDEVLKFFSR 917 (917)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999998864
No 6
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=99.95 E-value=7.6e-27 Score=212.61 Aligned_cols=158 Identities=47% Similarity=0.845 Sum_probs=141.1
Q ss_pred CchhhhhhhccCCCCccCcCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhhc---CC------ccchhhHH
Q 036469 1 MDTLGALALATEQPTNDLMSKPPVGRSEPLITKLMWRNLIPQAIYQVAILLTLQFKGRSIF---GV------QESAKDTM 71 (171)
Q Consensus 1 ~D~~palaL~~ep~~~~~M~r~Pr~~~~~ll~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~---g~------~~~~a~T~ 71 (171)
+|++|+++|+.|||++++|+||||+++++++++.++.+++.+|++++++++.+|++...+. +. ...+++|+
T Consensus 773 ~d~~~al~l~~e~~~~~lm~~~P~~~~~~li~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 852 (941)
T TIGR01517 773 MDTLAALALATEPPTEALLDRKPIGRNAPLISRSMWKNILGQAGYQLVVTFILLFAGGSIFDVSGPDEITSHQQGELNTI 852 (941)
T ss_pred HHHhhHHHHccCCccHHHHhCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCcccccccccchhhHH
Confidence 5899999999999999999999999999999999999999999999988887776543211 11 23578999
Q ss_pred HHHHHHHHHHHHHHhhhcCCccccccccccCHHHHHHHHHHHHHHHHHHHhhhhhhccccCChhHHHHHHHHHHHHHHHH
Q 036469 72 IFNTFVFCQIFNEFNARKLEKKNIFKGIHKNKLFLAIIGITIVLQLIMVEFLKKFADTERLNWGQWAACIGIAAMSWPIG 151 (171)
Q Consensus 72 ~F~~lv~~q~~~~~~~R~~~~~~~~~~~~~N~~l~~~~~~~~~l~~~~v~~l~~~f~~~~l~~~~w~~~~~~~~~~~~~~ 151 (171)
+|++++++|++|.+++|+.+..+++++.++|++++.++++++++|++++|+++++|++.|+++.+|++++++++..+++.
T Consensus 853 ~f~~~v~~~~~~~~~~r~~~~~~~~~~~~~n~~~~~~~~~~~~l~~~~~~~~~~~f~~~~l~~~~w~~~~~~~~~~~~~~ 932 (941)
T TIGR01517 853 VFNTFVLLQLFNEINARKLYERNVFEGLFKNRIFVTIMGFTFGFQVIIVEFGGSFFSTVSLSIEQWIGCVLLGMLSLIFG 932 (941)
T ss_pred HHHHHHHHHHHHHHHHccCCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999975446777889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcc
Q 036469 152 FLFKCIP 158 (171)
Q Consensus 152 e~~K~i~ 158 (171)
|+.|.+.
T Consensus 933 ~~~~~~~ 939 (941)
T TIGR01517 933 VLLRLIP 939 (941)
T ss_pred HHHHhcc
Confidence 9999985
No 7
>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism]
Probab=99.94 E-value=1.2e-27 Score=208.12 Aligned_cols=165 Identities=57% Similarity=0.978 Sum_probs=149.0
Q ss_pred CchhhhhhhccCCCCccCcCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC------ccchhhHHHHH
Q 036469 1 MDTLGALALATEQPTNDLMSKPPVGRSEPLITKLMWRNLIPQAIYQVAILLTLQFKGRSIFGV------QESAKDTMIFN 74 (171)
Q Consensus 1 ~D~~palaL~~ep~~~~~M~r~Pr~~~~~ll~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~g~------~~~~a~T~~F~ 74 (171)
||.+.|+||++|||.+++|+|||..|+++++++-||++++.|++++.++++...+.+...++. ...+..|+.|+
T Consensus 843 MDTLgALALATepPt~~Lm~RkP~GR~~~LIt~tMwknil~qa~YQl~vl~iL~F~G~~if~~~~~~~~~~~~~nTiIFN 922 (1034)
T KOG0204|consen 843 MDTLGALALATEPPTDELMKRKPVGRTKPLITRTMWKNILGQAVYQLIVLFILNFAGKSIFGLNGPLHSPPSVHNTIIFN 922 (1034)
T ss_pred HHHHHHHHhccCCCChHHhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcchhhhccCCCCCCchhhheeeehh
Confidence 799999999999999999999999999999999999999999999999998888777543321 12345599999
Q ss_pred HHHHHHHHHHHhhhcCCccccccccccCHHHHHHHHHHHHHHHHHHHhhhhhhccccCChhHHHHHHHHHHHHHHHHHHH
Q 036469 75 TFVFCQIFNEFNARKLEKKNIFKGIHKNKLFLAIIGITIVLQLIMVEFLKKFADTERLNWGQWAACIGIAAMSWPIGFLF 154 (171)
Q Consensus 75 ~lv~~q~~~~~~~R~~~~~~~~~~~~~N~~l~~~~~~~~~l~~~~v~~l~~~f~~~~l~~~~w~~~~~~~~~~~~~~e~~ 154 (171)
++|++|+||-+|+|+.++.++|+++++|+.+...+..++++|++++.+++..|+|+||++.+|++|+..+++.+++..+.
T Consensus 923 tFV~~qvFNEinaRki~~~NvFkgi~~N~~F~~ii~~T~v~QviIveF~g~~~st~~L~~~qWl~ci~~g~~sl~~g~~i 1002 (1034)
T KOG0204|consen 923 TFVFCQVFNEINARKIDERNVFKGIFRNRLFCVIITITVVSQVIIVEFGGAFFSTTPLSLTQWLWCIFIGVLSLPWGQLL 1002 (1034)
T ss_pred HHHHHHHHHHHhhcchhHHhHHHHHhcCceEEEEeeeeeehhhhhhhhcCcceeeecccHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999987788999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhccccccchh
Q 036469 155 KCIPVSGEQLL 165 (171)
Q Consensus 155 K~i~r~~~~~~ 165 (171)
|.++....++.
T Consensus 1003 k~iP~~~~~~~ 1013 (1034)
T KOG0204|consen 1003 KCIPVSSLPKL 1013 (1034)
T ss_pred eeccccccccc
Confidence 99886655543
No 8
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=99.92 E-value=3.2e-24 Score=196.35 Aligned_cols=160 Identities=16% Similarity=0.113 Sum_probs=132.6
Q ss_pred CchhhhhhhccCCCCccCcCCCCCCC-CCCCCcHHHHHH-HHHHHHHHHHHHHHHHHHhhhhcC--------C-------
Q 036469 1 MDTLGALALATEQPTNDLMSKPPVGR-SEPLITKLMWRN-LIPQAIYQVAILLTLQFKGRSIFG--------V------- 63 (171)
Q Consensus 1 ~D~~palaL~~ep~~~~~M~r~Pr~~-~~~ll~~~~~~~-i~~~g~~~~~~~~~~~~~~~~~~g--------~------- 63 (171)
+|++|+++|+.||+|+++|+||||++ +++++++.++.. ++..|++++++.+.+|++..+..| .
T Consensus 788 ~d~lp~~al~~e~~~~~~m~~~P~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 867 (997)
T TIGR01106 788 TDMVPAISLAYEKAESDIMKRQPRNPKTDKLVNERLISMAYGQIGMIQALGGFFTYFVILAENGFLPLHLVGLRVQWDDR 867 (997)
T ss_pred HHHHHHHHHhcCCCCcccccCCCcCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccccccccccc
Confidence 68999999999999999999999996 679999987655 556688888877776654321111 0
Q ss_pred -------c------c-------chhhHHHHHHHHHHHHHHHHhhhcCCccccccccccCHHHHHHHHHHHHHHHHHH--H
Q 036469 64 -------Q------E-------SAKDTMIFNTFVFCQIFNEFNARKLEKKNIFKGIHKNKLFLAIIGITIVLQLIMV--E 121 (171)
Q Consensus 64 -------~------~-------~~a~T~~F~~lv~~q~~~~~~~R~~~~~~~~~~~~~N~~l~~~~~~~~~l~~~~v--~ 121 (171)
. . +.+||++|++++++|++|.++||+. +.++|+..++|++++.+++++++++++++ |
T Consensus 868 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~f~~~v~~q~~~~~~~R~~-~~~~f~~~~~n~~l~~~~~~~~~l~~~~~~~p 946 (997)
T TIGR01106 868 WINDLEDSYGQEWTYEQRKYVEFTCHTAFFVSIVVVQWADLIICKTR-RNSVFQQGMKNKILIFGLFEETALAAFLSYCP 946 (997)
T ss_pred cccccccccccccchhcccchhhhhhHHHHHHHHHHHHHHHHHhccC-cccccccCCcCHHHHHHHHHHHHHHHHHHHhh
Confidence 0 0 1579999999999999999999996 56777544899999999999999887654 5
Q ss_pred hhhhhhccccCChhHHHHHHHHHHHHHHHHHHHHhccccc
Q 036469 122 FLKKFADTERLNWGQWAACIGIAAMSWPIGFLFKCIPVSG 161 (171)
Q Consensus 122 ~l~~~f~~~~l~~~~w~~~~~~~~~~~~~~e~~K~i~r~~ 161 (171)
+++.+|++.|+++.+|.++++.+++.+++.|++|++.|+.
T Consensus 947 ~~~~~f~~~~l~~~~w~~~~~~~~~~~~~~~~~k~~~r~~ 986 (997)
T TIGR01106 947 GMGVALRMYPLKPTWWFCAFPYSLLIFVYDEIRKLIIRRN 986 (997)
T ss_pred hhHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 7899999999999999999999999999999999988653
No 9
>KOG0203 consensus Na+/K+ ATPase, alpha subunit [Inorganic ion transport and metabolism]
Probab=99.86 E-value=1e-22 Score=177.59 Aligned_cols=161 Identities=17% Similarity=0.184 Sum_probs=138.4
Q ss_pred CchhhhhhhccCCCCccCcCCCCCC-CCCCCCcHHHHH-HHHHHHHHHHHHHHHHHHHhhhhcCC---------------
Q 036469 1 MDTLGALALATEQPTNDLMSKPPVG-RSEPLITKLMWR-NLIPQAIYQVAILLTLQFKGRSIFGV--------------- 63 (171)
Q Consensus 1 ~D~~palaL~~ep~~~~~M~r~Pr~-~~~~ll~~~~~~-~i~~~g~~~~~~~~~~~~~~~~~~g~--------------- 63 (171)
||..||+.|++|+||.|+|+|+||+ ++++++|+++.. .++..|.+++++++..||..+...|.
T Consensus 810 TDmvPAiSLAYE~aEsDIM~r~PR~p~~D~LVN~rLi~~aY~qIG~iqa~agF~tYFvima~nGf~P~~L~~ir~~W~d~ 889 (1019)
T KOG0203|consen 810 TDIVPAISLAYEKAESDIMLRPPRNPKDDKLVNKRLISYSYLQIGMIQALAGFFTYFVIMAENGFLPRTLVGLREDWDDD 889 (1019)
T ss_pred cccchhhhHhccCchhhHHhcCCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHhhHHhhhhh
Confidence 7999999999999999999999999 788999998864 56777999999999999876542221
Q ss_pred -------------c-------cchhhHHHHHHHHHHHHHHHHhhhcCCccccccccccCHHHHHHHHHHHHHHHHH--HH
Q 036469 64 -------------Q-------ESAKDTMIFNTFVFCQIFNEFNARKLEKKNIFKGIHKNKLFLAIIGITIVLQLIM--VE 121 (171)
Q Consensus 64 -------------~-------~~~a~T~~F~~lv~~q~~~~~~~R~~~~~~~~~~~~~N~~l~~~~~~~~~l~~~~--v~ 121 (171)
+ ..+++|+.|.++|..|+.+.+.|++. ++|+|++-++|+.++.+++..+++.+.+ +|
T Consensus 890 ~~~Dl~DsyGQeWtyeqRk~le~tc~taFfvsIvV~Q~adLii~KTR-RnSlfqqGmrN~vl~f~v~~e~~La~fl~y~p 968 (1019)
T KOG0203|consen 890 GVNDLTDSYGQEWTYEQRKYLEYTCYTAFFISIVVVQWADLIICKTR-RNSIFQQGMRNKVLIFAVIFETCLACFLCYCP 968 (1019)
T ss_pred hhhhhhhhccccccHHHHHHHHHhhhhheeeeehHHhHhhHHhhhcc-hhHHHHhhhhhhhHHHHHHHHHHHHHHHhcCc
Confidence 1 23478999999999999999999995 6888875589999999999888887654 47
Q ss_pred hhhhhhccccCChhHHHHHHHHHHHHHHHHHHHHhcccccc
Q 036469 122 FLKKFADTERLNWGQWAACIGIAAMSWPIGFLFKCIPVSGE 162 (171)
Q Consensus 122 ~l~~~f~~~~l~~~~w~~~~~~~~~~~~~~e~~K~i~r~~~ 162 (171)
++...|++.|+.+..|+..++.++..++++|++|++.|+-+
T Consensus 969 g~~~~l~~~pl~~~~wl~a~P~~ilIfvydE~Rk~~IR~~P 1009 (1019)
T KOG0203|consen 969 GVLYALGMYPLKFQWWLVAFPFGILIFVYDEVRKLFIRRYP 1009 (1019)
T ss_pred cHHHHhccCCCCcEEEEecccceeeeeeHHHHHhHhhhhCC
Confidence 89999999999998899999999999999999999998543
No 10
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=99.86 E-value=1e-20 Score=171.71 Aligned_cols=152 Identities=14% Similarity=0.096 Sum_probs=116.0
Q ss_pred CchhhhhhhccCCCCccCcCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcc--chhhHHHHHHHHH
Q 036469 1 MDTLGALALATEQPTNDLMSKPPVGRSEPLITKLMWRNLIPQAIYQVAILLTLQFKGRSIFGVQE--SAKDTMIFNTFVF 78 (171)
Q Consensus 1 ~D~~palaL~~ep~~~~~M~r~Pr~~~~~ll~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~g~~~--~~a~T~~F~~lv~ 78 (171)
||. |+++|++||+|+++| ||||+++++++++.++. +...+.+.+++++..+++... .+... ...+|+.|.++++
T Consensus 741 ~D~-~~lal~~d~~~~~~m-~~P~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~t~~f~~l~~ 816 (903)
T PRK15122 741 YDI-SQLSLPWDKMDKEFL-RKPRKWDAKNIGRFMLW-IGPTSSIFDITTFALMWFVFA-ANSVEMQALFQSGWFIEGLL 816 (903)
T ss_pred HHH-HHHhhcCCCCCHhhc-CCCCCCChhhhHHHHHH-HHHHHHHHHHHHHHHHHHHhc-cCcHhhhhhhHHHHHHHHHH
Confidence 585 999999999999999 99999999999997765 333344444444443322211 12111 1245889999999
Q ss_pred HHHHHHHhhhcCCccccccccccCHHHHHHHHHHHHHHHHHH--Hh--hhhhhccccCChhHHHHHHHHHHHHHHHHHHH
Q 036469 79 CQIFNEFNARKLEKKNIFKGIHKNKLFLAIIGITIVLQLIMV--EF--LKKFADTERLNWGQWAACIGIAAMSWPIGFLF 154 (171)
Q Consensus 79 ~q~~~~~~~R~~~~~~~~~~~~~N~~l~~~~~~~~~l~~~~v--~~--l~~~f~~~~l~~~~w~~~~~~~~~~~~~~e~~ 154 (171)
+|++|++++|+.+ .+ +++|++.+..++++++++++++ |+ ++.+|+++|+++.+|.++++.++.++++.|+.
T Consensus 817 ~q~~~~~~~R~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~e~~ 891 (903)
T PRK15122 817 SQTLVVHMLRTQK-IP----FIQSTAALPVLLTTGLIMAIGIYIPFSPLGAMVGLEPLPWSYFPWLAATLLGYCLVAQGM 891 (903)
T ss_pred HHHHHHHhhCcCC-CC----cCcchHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999963 33 4578888888888888887654 54 89999999999999999999999999999998
Q ss_pred Hhccccc
Q 036469 155 KCIPVSG 161 (171)
Q Consensus 155 K~i~r~~ 161 (171)
|.+-.|+
T Consensus 892 k~~~~r~ 898 (903)
T PRK15122 892 KRFYIRR 898 (903)
T ss_pred HHHHhhh
Confidence 8554433
No 11
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=99.76 E-value=1.2e-17 Score=151.35 Aligned_cols=148 Identities=12% Similarity=0.123 Sum_probs=105.3
Q ss_pred CchhhhhhhccCCCCccCcCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-Cc---cchhhHHHHHHH
Q 036469 1 MDTLGALALATEQPTNDLMSKPPVGRSEPLITKLMWRNLIPQAIYQVAILLTLQFKGRSIFG-VQ---ESAKDTMIFNTF 76 (171)
Q Consensus 1 ~D~~palaL~~ep~~~~~M~r~Pr~~~~~ll~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~g-~~---~~~a~T~~F~~l 76 (171)
|| +|+++|++||+|+++|++||| ++++.+.+. ++..|.+.++..+..|.......+ .+ ...-||+.|.++
T Consensus 706 ~d-~~~~al~~~~~~~~~m~~p~~-~~~~~~~~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~f~~~ 779 (867)
T TIGR01524 706 YD-FSQLTLPWDKMDREFLKKPHQ-WEQKGMGRF----MLCIGPVSSIFDIATFLLMWFVFSANTVEEQALFQSGWFVVG 779 (867)
T ss_pred HH-HHHHhhcCCCCChHhhCCCCC-CChhhHHHH----HHHHHHHHHHHHHHHHHHHHHHhcccchhhhhHHHHHHHHHH
Confidence 58 799999999999999987666 777544443 444566555444444333211111 11 112378999999
Q ss_pred HHHHHHHHHhhhcCCccccccccccCHHHHHHHHHHHHHHHHHH--Hh--hhhhhccccC--ChhHHHHHHHHHHHHHHH
Q 036469 77 VFCQIFNEFNARKLEKKNIFKGIHKNKLFLAIIGITIVLQLIMV--EF--LKKFADTERL--NWGQWAACIGIAAMSWPI 150 (171)
Q Consensus 77 v~~q~~~~~~~R~~~~~~~~~~~~~N~~l~~~~~~~~~l~~~~v--~~--l~~~f~~~~l--~~~~w~~~~~~~~~~~~~ 150 (171)
+++|++|++++|+.+ .+ +++|++++.+++++++++++++ |+ ++.+|++.|+ ++.+|++++.++.. ++
T Consensus 780 ~~~~~~~~~~~R~~~-~~----~~~n~~~~~~~~~~~~~~~~~~~~p~~~~~~~f~~~~l~~~~~~~~~~~~~~~~--~~ 852 (867)
T TIGR01524 780 LLSQTLVVHMIRTEK-IP----FIQSRAAAPVMIATLLVMALGIIIPFSPLGHSIGLVSLPLSYFPWLIAILVGYM--AT 852 (867)
T ss_pred HHHHHHHHHhhCcCC-CC----cCcchHHHHHHHHHHHHHHHHHHhchhhhhhhhccccCCccHHHHHHHHHHHHH--HH
Confidence 999999999999963 23 4679999999999999988765 44 4999999987 55678877776665 66
Q ss_pred HHHHHhccccc
Q 036469 151 GFLFKCIPVSG 161 (171)
Q Consensus 151 ~e~~K~i~r~~ 161 (171)
.|+.|.+-.|+
T Consensus 853 ~e~~k~~~~~~ 863 (867)
T TIGR01524 853 MQLVKTFYIRR 863 (867)
T ss_pred HHHHHHHHHHh
Confidence 88888664433
No 12
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=99.76 E-value=1.1e-17 Score=152.06 Aligned_cols=146 Identities=12% Similarity=0.110 Sum_probs=105.5
Q ss_pred CchhhhhhhccCCCCccCcCCCCC-CCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccc----hhhHHHHHH
Q 036469 1 MDTLGALALATEQPTNDLMSKPPV-GRSEPLITKLMWRNLIPQAIYQVAILLTLQFKGRSIFGVQES----AKDTMIFNT 75 (171)
Q Consensus 1 ~D~~palaL~~ep~~~~~M~r~Pr-~~~~~ll~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~g~~~~----~a~T~~F~~ 75 (171)
|| +|++||++||+|+++|+|||| ++++ ..+.++..|.+.++..+..|+...+..+...+ ..+|..|.+
T Consensus 741 ~D-~~~~al~~d~~~~~~m~~p~r~~~~~------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~ 813 (902)
T PRK10517 741 YD-VSQVAIPFDNVDDEQIQKPQRWNPAD------LGRFMVFFGPISSIFDILTFCLMWWVFHANTPETQTLFQSGWFVV 813 (902)
T ss_pred HH-HhHHhhcCCCCChhhhcCCCCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHccccchhhHhHHHHHHHHH
Confidence 58 689999999999999999999 3332 33445555666555555544433222231112 234556999
Q ss_pred HHHHHHHHHHhhhcCCccccccccccCHHHHHHHHHHHHHHHHHH--H--hhhhhhccccCC--hhHHHHHHHHHHHHHH
Q 036469 76 FVFCQIFNEFNARKLEKKNIFKGIHKNKLFLAIIGITIVLQLIMV--E--FLKKFADTERLN--WGQWAACIGIAAMSWP 149 (171)
Q Consensus 76 lv~~q~~~~~~~R~~~~~~~~~~~~~N~~l~~~~~~~~~l~~~~v--~--~l~~~f~~~~l~--~~~w~~~~~~~~~~~~ 149 (171)
++++|+++++++|+.+ . ++++|++++.+++.+++++++.+ | +++.+|+++|++ ..+|.+++.++.. +
T Consensus 814 ~~~~q~~~~~~~R~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~ 886 (902)
T PRK10517 814 GLLSQTLIVHMIRTRR-I----PFIQSRAAWPLMIMTLIVMAVGIALPFSPLASYLQLQALPLSYFPWLVAILAGYM--T 886 (902)
T ss_pred HHHHHHHHHHhhccCC-C----CcccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhCCcCCChhHHHHHHHHHHHHH--H
Confidence 9999999999999963 2 34689999999999988887554 5 689999999999 6788887777666 5
Q ss_pred HHHHHHhcccc
Q 036469 150 IGFLFKCIPVS 160 (171)
Q Consensus 150 ~~e~~K~i~r~ 160 (171)
+.|+.|.+-.|
T Consensus 887 ~~e~~K~~~~~ 897 (902)
T PRK10517 887 LTQLVKGFYSR 897 (902)
T ss_pred HHHHHHHHHHH
Confidence 67887776443
No 13
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=99.73 E-value=1e-16 Score=145.96 Aligned_cols=155 Identities=23% Similarity=0.357 Sum_probs=125.7
Q ss_pred CchhhhhhhccCCCCccCcCCCCCCCCCCCCcHHHHHH-HHHHHHHHHHHHHHHHHHhhhhcCC-------ccchhhHHH
Q 036469 1 MDTLGALALATEQPTNDLMSKPPVGRSEPLITKLMWRN-LIPQAIYQVAILLTLQFKGRSIFGV-------QESAKDTMI 72 (171)
Q Consensus 1 ~D~~palaL~~ep~~~~~M~r~Pr~~~~~ll~~~~~~~-i~~~g~~~~~~~~~~~~~~~~~~g~-------~~~~a~T~~ 72 (171)
+|++|+++|+.||+|.++|++|||+|++++++++.+.+ ++..|...+++.+..|.+....... ....++|++
T Consensus 744 ~d~~pa~~L~~~~~~~~~m~~~~~~p~~~i~~~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 823 (917)
T COG0474 744 TDSLPALALGVEDPESDVMKRPPRGPEEGLFNRKIFWRFILIIGLLSAILFILTFLLYLLGFIANTLGLDLFQALLQTTA 823 (917)
T ss_pred HhhhhhheeecCCCcccccccCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHH
Confidence 58999999999999999999999999999999998877 6777877777777776655432111 155689999
Q ss_pred HHHHHHHHHHHHHhhhcCCcccccc-ccccCHHHHHHHHHHHHHHHHHH--Hhhh-hhhccccCChhHHHHHHHHHH--H
Q 036469 73 FNTFVFCQIFNEFNARKLEKKNIFK-GIHKNKLFLAIIGITIVLQLIMV--EFLK-KFADTERLNWGQWAACIGIAA--M 146 (171)
Q Consensus 73 F~~lv~~q~~~~~~~R~~~~~~~~~-~~~~N~~l~~~~~~~~~l~~~~v--~~l~-~~f~~~~l~~~~w~~~~~~~~--~ 146 (171)
|..++++|.++.+.+|+. ..++++ ++++|++++++++++.+++++.+ |..+ ..|++.|++..+|.++...+. .
T Consensus 824 f~~~~~~~~~~~~~~~~~-~~~~~~~~~~~n~~~~~~~~~~~~l~l~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 902 (917)
T COG0474 824 FTVLVLIQLLLTLAVRSR-GRPFLSSLLFSNKYLWLALLVIIILQLLIIFLPPLNLKIFQPTPLSLFEWLIAIAVALLLL 902 (917)
T ss_pred HHHHHHHHHHHHHHHhcc-ccchhhcccccCHHHHHHHHHHHHHHHHHHHhHHhHhhhccCCCCcHHHHHHHHHHHHHHH
Confidence 999999999999999996 456665 56799999999999999988765 4566 799999999999999888874 4
Q ss_pred HHHHHHHHHh
Q 036469 147 SWPIGFLFKC 156 (171)
Q Consensus 147 ~~~~~e~~K~ 156 (171)
.+...|..|.
T Consensus 903 ~~~~~~~~~~ 912 (917)
T COG0474 903 YIVVSELYKL 912 (917)
T ss_pred HHHHHHHHHH
Confidence 4445555544
No 14
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=99.33 E-value=9.9e-12 Score=115.18 Aligned_cols=133 Identities=17% Similarity=0.193 Sum_probs=103.3
Q ss_pred CchhhhhhhccCCCCccCcCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhh--hc----C--Cc----cchh
Q 036469 1 MDTLGALALATEQPTNDLMSKPPVGRSEPLITKLMWRNLIPQAIYQVAILLTLQFKGRS--IF----G--VQ----ESAK 68 (171)
Q Consensus 1 ~D~~palaL~~ep~~~~~M~r~Pr~~~~~ll~~~~~~~i~~~g~~~~~~~~~~~~~~~~--~~----g--~~----~~~a 68 (171)
+|.+++++++.|||++++|++||+ ++++++.++..++.++++..++.+.+|.+... +. . .+ ....
T Consensus 901 ~~~~~~l~l~~~~p~~~l~~~~P~---~~l~~~~~~~si~~q~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 977 (1054)
T TIGR01657 901 LIFPVALLMSRNKPLKKLSKERPP---SNLFSVYILTSVLIQFVLHILSQVYLVFELHAQPWYKPENPVDLEKENFPNLL 977 (1054)
T ss_pred HHHHHHHHHHcCCchhhcCCCCCC---ccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCCCCCCcccccCccHH
Confidence 478999999999999999999984 79999999999999999999988888776542 10 0 00 1234
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCccccccccccCHHHHHHHHHHHHHHHH-H---HHhhhhhhccccCChhHHHH
Q 036469 69 DTMIFNTFVFCQIFNEFNARKLEKKNIFKGIHKNKLFLAIIGITIVLQLI-M---VEFLKKFADTERLNWGQWAA 139 (171)
Q Consensus 69 ~T~~F~~lv~~q~~~~~~~R~~~~~~~~~~~~~N~~l~~~~~~~~~l~~~-~---v~~l~~~f~~~~l~~~~w~~ 139 (171)
+|+.| .++..|.++.+.+++. ++++.+++++|+++++++++++++++. + +|+++++|+++|++. +|-.
T Consensus 978 ~T~~f-~~~~~~~~~~~~~~~~-g~pf~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~ 1049 (1054)
T TIGR01657 978 NTVLF-FVSSFQYLITAIVNSK-GPPFREPIYKNKPFVYLLITGLGLLLVLLLDPHPLLGKILQIVPLPQ-EFRS 1049 (1054)
T ss_pred HHHHH-HHHHHHHHHheEEEcC-CcchhhhHHHhHHHHHHHHHHHHHHHHhhhCCCHHHHhhheeeeCCH-HHHH
Confidence 69999 6666666777888885 556666889999999999888777653 2 368999999999985 4543
No 15
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=98.87 E-value=2.6e-08 Score=89.88 Aligned_cols=108 Identities=13% Similarity=0.113 Sum_probs=79.4
Q ss_pred CchhhhhhhccCCCCccCcCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhh------hcC--CccchhhHHH
Q 036469 1 MDTLGALALATEQPTNDLMSKPPVGRSEPLITKLMWRNLIPQAIYQVAILLTLQFKGRS------IFG--VQESAKDTMI 72 (171)
Q Consensus 1 ~D~~palaL~~ep~~~~~M~r~Pr~~~~~ll~~~~~~~i~~~g~~~~~~~~~~~~~~~~------~~g--~~~~~a~T~~ 72 (171)
+|. +++++++|++++ ||+|++..++ .++..++..|.+.++++++.|++... ..+ .+.+++||++
T Consensus 637 ~d~-~~~~l~~~~~~~------~~~p~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 708 (755)
T TIGR01647 637 NDG-TIMTIAYDNVKP------SKLPQRWNLR-EVFTMSTVLGIYLVISTFLLLAIALDTSFFIDKFGLQLLHGNLQSLI 708 (755)
T ss_pred HhH-hHhhccCCCCCC------CCCCCccchH-HHHHHHHHHHHHHHHHHHHHHHHHHhcccchhcccccccHhhhHHHH
Confidence 465 699999999885 4555555554 66777888899999888887765532 011 1245789999
Q ss_pred HHHHHHHHHHHHHhhhcCCccccccccccCHHHHHHHHHHHHHHHHH
Q 036469 73 FNTFVFCQIFNEFNARKLEKKNIFKGIHKNKLFLAIIGITIVLQLIM 119 (171)
Q Consensus 73 F~~lv~~q~~~~~~~R~~~~~~~~~~~~~N~~l~~~~~~~~~l~~~~ 119 (171)
|.+++++|.++.+++|+. + ..|. ...|+++..+.++..++..++
T Consensus 709 f~~~~~~~~~~~~~~r~~-~-~~~~-~~p~~~l~~~~~~~~~~~~~~ 752 (755)
T TIGR01647 709 YLQVSISGQATIFVTRTH-G-FFWS-ERPGKLLFIAFVIAQIIATFI 752 (755)
T ss_pred HHHHHHHHHHHHheeccC-C-CCcc-cCCcHHHHHHHHHHHHHHHHH
Confidence 999999999999999995 3 3343 258999988888877776654
No 16
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=97.97 E-value=0.00011 Score=68.92 Aligned_cols=154 Identities=17% Similarity=0.189 Sum_probs=85.6
Q ss_pred Cchhhhhhhcc--CCCCccCcCCCCC----CCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----cCC--ccch
Q 036469 1 MDTLGALALAT--EQPTNDLMSKPPV----GRSEPLITKLMWRNLIPQAIYQVAILLTLQFKGRSI-----FGV--QESA 67 (171)
Q Consensus 1 ~D~~palaL~~--ep~~~~~M~r~Pr----~~~~~ll~~~~~~~i~~~g~~~~~~~~~~~~~~~~~-----~g~--~~~~ 67 (171)
+|.+|++++|. +++++++|+++|+ .++++.++.+.+...++.|++.++++++.-+..... .|. +...
T Consensus 875 ~t~lp~~~l~~~d~~~~~~~l~~~P~ly~~~~~~~~~~~~~f~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~g~~~~~~~ 954 (1057)
T TIGR01652 875 FTALPVISLGVFDQDVSASLSLRYPQLYREGQKGQGFSTKTFWGWMLDGIYQSLVIFFFPMFAYILGDFVSSGSLDDFSS 954 (1057)
T ss_pred HHhHHHHHHHHhcccCCHHHHHhChHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCcccchhh
Confidence 37889999986 5778999999999 678899999887777888998888776543322211 111 1122
Q ss_pred hhHHHHHHHHHHHHHHHHhhhcCCccccccccccCHHHHHHHHHHHHHHHHHHHhhhhh------hcc---ccCChhHHH
Q 036469 68 KDTMIFNTFVFCQIFNEFNARKLEKKNIFKGIHKNKLFLAIIGITIVLQLIMVEFLKKF------ADT---ERLNWGQWA 138 (171)
Q Consensus 68 a~T~~F~~lv~~q~~~~~~~R~~~~~~~~~~~~~N~~l~~~~~~~~~l~~~~v~~l~~~------f~~---~~l~~~~w~ 138 (171)
-.+..|+++++...+..+. .+ + .-+++.++++.+++++-++.....+.. +++ .--++.-|.
T Consensus 955 ~~~~~~~~~~~~~~~~~~~-~~-~--------~wt~~~~~~~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~f~l 1024 (1057)
T TIGR01652 955 VGVIVFTALVVIVNLKIAL-EI-N--------RWNWISLITIWGSILVWLIFVIVYSSIFPSPAFYKAAPRVMGTFGFWL 1024 (1057)
T ss_pred HHHHHHHHHHHHHHHHHHH-HH-h--------HhHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHccHHHHH
Confidence 3344555555444444432 11 0 113344455555555543322111111 111 112345677
Q ss_pred HHHHHHHHHHHHHHHHHhccccccch
Q 036469 139 ACIGIAAMSWPIGFLFKCIPVSGEQL 164 (171)
Q Consensus 139 ~~~~~~~~~~~~~e~~K~i~r~~~~~ 164 (171)
.++....+.++..-+.|.+++.-.|.
T Consensus 1025 ~~ll~~~~~l~p~~~~~~~~~~~~P~ 1050 (1057)
T TIGR01652 1025 VLLVIVLISLLPRFTYKAIQRLFRPP 1050 (1057)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 66666565565666667766554443
No 17
>KOG0210 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=91.66 E-value=1.2 Score=40.51 Aligned_cols=91 Identities=11% Similarity=0.131 Sum_probs=61.4
Q ss_pred hhhHHHHHHHHHHHHHHH-HhhhcCCccccccccccCHHHHHHHHHHHHHHHHHHHhhhhhhccccCChhHH-HHHHHHH
Q 036469 67 AKDTMIFNTFVFCQIFNE-FNARKLEKKNIFKGIHKNKLFLAIIGITIVLQLIMVEFLKKFADTERLNWGQW-AACIGIA 144 (171)
Q Consensus 67 ~a~T~~F~~lv~~q~~~~-~~~R~~~~~~~~~~~~~N~~l~~~~~~~~~l~~~~v~~l~~~f~~~~l~~~~w-~~~~~~~ 144 (171)
.--+..|+++++.++... +..++ -++.++++-++++++-++.++.++++|...-+..... .-..+.-
T Consensus 956 ~ivaisFtaLi~tELiMVaLtv~t-----------w~~~m~vae~lsL~~Yivsl~~l~~yfd~~f~~~~~Fl~k~t~I~ 1024 (1051)
T KOG0210|consen 956 HIVAISFTALILTELIMVALTVRT-----------WHWLMVVAELLSLALYIVSLAFLHEYFDRYFILTYVFLWKVTVIT 1024 (1051)
T ss_pred EeeeeeeHHHHHHHHHHHhhhhhh-----------hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 455788999999887654 32222 3566677777777776666778888887665443322 2234445
Q ss_pred HHHHHHHHHHHhccccccchhhcc
Q 036469 145 AMSWPIGFLFKCIPVSGEQLLFRQ 168 (171)
Q Consensus 145 ~~~~~~~e~~K~i~r~~~~~~~~~ 168 (171)
++.++.....|.++|+.+|-.|.+
T Consensus 1025 ~vS~Lpl~~~K~lrrk~sPpSYaK 1048 (1051)
T KOG0210|consen 1025 LVSCLPLYFIKALRRKLSPPSYAK 1048 (1051)
T ss_pred HHHHHHHHHHHHHHhhcCCcchhh
Confidence 555666778999999999988875
No 18
>KOG0209 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=87.99 E-value=23 Score=33.16 Aligned_cols=149 Identities=12% Similarity=0.103 Sum_probs=81.3
Q ss_pred ccCCCCccCcCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhhc------CC------ccchhhHHHHHHHH
Q 036469 10 ATEQPTNDLMSKPPVGRSEPLITKLMWRNLIPQAIYQVAILLTLQFKGRSIF------GV------QESAKDTMIFNTFV 77 (171)
Q Consensus 10 ~~ep~~~~~M~r~Pr~~~~~ll~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~------g~------~~~~a~T~~F~~lv 77 (171)
.-.+|-+.+-++.|- .+|+|......++.|=.+=.... .|..+.... +. +++.-.|..|..-.
T Consensus 987 SrskPLetLSkeRP~---~nIFN~Y~i~svl~QFaVH~~tL--vYi~~~a~~~~p~~~~vdl~~~F~PsllNt~vyiisl 1061 (1160)
T KOG0209|consen 987 SRSKPLETLSKERPL---PNIFNVYIILSVLLQFAVHIATL--VYITGEAYKLEPPEEKVDLEEKFSPSLLNTTVYIISL 1061 (1160)
T ss_pred ecCCchhhHhhcCCC---CCcchHHHHHHHHHHHHHHHHHh--hhhHHHHHhcCCcccccChhcccChhhhhhHHHHHHH
Confidence 334455555555553 47999987776665433322222 222222110 01 12223344444333
Q ss_pred HHHHHHHHhhhcCCccccccccccCHHHHHHHHHHHHHHHHHH----HhhhhhhccccCChhH---HHHHHHH-HHHHHH
Q 036469 78 FCQIFNEFNARKLEKKNIFKGIHKNKLFLAIIGITIVLQLIMV----EFLKKFADTERLNWGQ---WAACIGI-AAMSWP 149 (171)
Q Consensus 78 ~~q~~~~~~~R~~~~~~~~~~~~~N~~l~~~~~~~~~l~~~~v----~~l~~~f~~~~l~~~~---w~~~~~~-~~~~~~ 149 (171)
..|+. .|..--. ++++-+.++.||.++.+++++..+.+... |-++.-|+..+++-.. ...++.+ -++.+.
T Consensus 1062 ~~Qvs-TFAVNY~-G~PF~Esl~eNK~l~y~ll~~~~~~~~l~tg~~peLn~~~~lV~mp~~fk~~ll~~l~lD~v~c~~ 1139 (1160)
T KOG0209|consen 1062 AQQVS-TFAVNYQ-GRPFRESLRENKGLLYGLLGSAGVIIALATGSSPELNEKFELVDMPQDFKIKLLAVLVLDFVLCYL 1139 (1160)
T ss_pred HHHHH-Hhhhhcc-CcchhhhhhhccchHHHHHHHHHHHHHHHhccChhHHhheeeecccHHHHHHHHHHHHHHHHHHHH
Confidence 34443 2322221 34666688899999999988877766544 5689999999987322 2222333 334456
Q ss_pred HHHHHHhccccccchh
Q 036469 150 IGFLFKCIPVSGEQLL 165 (171)
Q Consensus 150 ~~e~~K~i~r~~~~~~ 165 (171)
+.++.|++-...+++.
T Consensus 1140 ~er~~~f~f~~~k~k~ 1155 (1160)
T KOG0209|consen 1140 VERVLKFFFGDHKPKA 1155 (1160)
T ss_pred HHHHHHHHccCCCccc
Confidence 6667787766555554
No 19
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=82.04 E-value=20 Score=27.29 Aligned_cols=27 Identities=11% Similarity=0.268 Sum_probs=13.2
Q ss_pred ccCcCCCCCCCCCCCCcHHHHHHHHHHH
Q 036469 16 NDLMSKPPVGRSEPLITKLMWRNLIPQA 43 (171)
Q Consensus 16 ~~~M~r~Pr~~~~~ll~~~~~~~i~~~g 43 (171)
+.+.+.+|++++.+. +...+..++-.+
T Consensus 60 ~eli~~~~k~~~~~~-~~~~~~~~ld~~ 86 (206)
T PF06570_consen 60 DELIKPLPKPKKKNK-NSNPWLMALDNS 86 (206)
T ss_pred HHHhccccCCccccc-ccchHHHHHHHH
Confidence 445566666665544 333344444333
No 20
>KOG0208 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=72.07 E-value=12 Score=35.51 Aligned_cols=144 Identities=17% Similarity=0.188 Sum_probs=78.4
Q ss_pred hhhhhccCCCCccCcCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhh---hc----CC---ccchhhHHHHH
Q 036469 5 GALALATEQPTNDLMSKPPVGRSEPLITKLMWRNLIPQAIYQVAILLTLQFKGRS---IF----GV---QESAKDTMIFN 74 (171)
Q Consensus 5 palaL~~ep~~~~~M~r~Pr~~~~~ll~~~~~~~i~~~g~~~~~~~~~~~~~~~~---~~----g~---~~~~a~T~~F~ 74 (171)
-|+.++.-+|...+-.. +|+..+++++.....++|-+++.++-+..++.... +. +. ..+.--|..|.
T Consensus 956 ia~~m~~~~a~~~L~~~---rP~~~L~s~~~~~~l~~q~vli~l~q~i~~l~~~~qpw~~pp~~~~~~nt~s~~~T~lF~ 1032 (1140)
T KOG0208|consen 956 IAVMMSRFDASDKLFPK---RPPTNLLSKKILVPLLLQIVLICLVQWILTLIVEPQPWYEPPNPQVDDNTQSSDNTSLFF 1032 (1140)
T ss_pred HHHHHccCcHHHHhcCC---CCCccccccchhhhhHHHHHHHHHHHHhhheeeccccceecCCCCcCcccccceeeEeee
Confidence 45666666666655433 34568999998888888888777776666655431 00 00 01122355666
Q ss_pred HHHHHHHHHHHhhhcCCccccccccccCHHHHHHHHHHHHHHHHH--HH-h--hhhhhccccCCh-hHHHHHHHHHHHHH
Q 036469 75 TFVFCQIFNEFNARKLEKKNIFKGIHKNKLFLAIIGITIVLQLIM--VE-F--LKKFADTERLNW-GQWAACIGIAAMSW 148 (171)
Q Consensus 75 ~lv~~q~~~~~~~R~~~~~~~~~~~~~N~~l~~~~~~~~~l~~~~--v~-~--l~~~f~~~~l~~-~~w~~~~~~~~~~~ 148 (171)
.-.+--+++++.... ..++-+.+++|+.+...+.+..+..+.+ +. . ..+.++.++.+- .+-.+++......+
T Consensus 1033 vS~fqYi~~a~v~S~--g~pfr~pl~~n~~f~~~i~~i~~~~i~l~~~~~~~~~~~l~~~t~~~~~~~~fii~~~~~~~~ 1110 (1140)
T KOG0208|consen 1033 VSSFQYIFIALVLSK--GSPFRRPLWKNVLFKVFITVIILSTIYLLFVNYLFIEWKLLQLTYIPTTFDRFIILLVVISYF 1110 (1140)
T ss_pred hhHHHHHHhheeecc--CCcccCchhcCceeeeehhhHHhhhhhhhhccccchhhhhhceeccCcchhHHHHHHHHHHHH
Confidence 666666666665444 2334456788876554444433333322 22 1 236688888776 33333343433334
Q ss_pred HHHHH
Q 036469 149 PIGFL 153 (171)
Q Consensus 149 ~~~e~ 153 (171)
....+
T Consensus 1111 ~~~~~ 1115 (1140)
T KOG0208|consen 1111 ALNYI 1115 (1140)
T ss_pred HHHHh
Confidence 33333
No 21
>PLN03190 aminophospholipid translocase; Provisional
Probab=70.55 E-value=1.1e+02 Score=29.92 Aligned_cols=28 Identities=7% Similarity=0.222 Sum_probs=20.0
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHHH
Q 036469 26 RSEPLITKLMWRNLIPQAIYQVAILLTL 53 (171)
Q Consensus 26 ~~~~ll~~~~~~~i~~~g~~~~~~~~~~ 53 (171)
++...++.+.....++.|++.++++++.
T Consensus 1009 ~~~~~~n~~~F~~w~~~~i~qs~iiff~ 1036 (1178)
T PLN03190 1009 QRQEAYNSKLFWLTMIDTLWQSAVVFFV 1036 (1178)
T ss_pred ccCCccCHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788887777777788888776654
No 22
>PF10183 ESSS: ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) ; InterPro: IPR019329 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents the ESSS subunit from mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences [].
Probab=60.63 E-value=37 Score=23.10 Aligned_cols=42 Identities=12% Similarity=0.035 Sum_probs=26.2
Q ss_pred CCCCccCcCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 036469 12 EQPTNDLMSKPPVGRSEPLITKLMWRNLIPQAIYQVAILLTLQ 54 (171)
Q Consensus 12 ep~~~~~M~r~Pr~~~~~ll~~~~~~~i~~~g~~~~~~~~~~~ 54 (171)
|+++..++.++|..++ .--++..+-.+.+.|+..+++.+.++
T Consensus 36 ~~p~g~l~~~~p~~~G-~~~d~e~we~~~f~~~~~~~v~~~~~ 77 (105)
T PF10183_consen 36 DPPNGWLFGKNPPSPG-EKRDWEGWELPFFFGFSGSLVFGGVF 77 (105)
T ss_pred CCCCccccCCCCCcCC-CcchHhhhHHHHHHHHHHHHHHHHHH
Confidence 3555568888887766 34566666666666665555554443
No 23
>PF11804 DUF3325: Protein of unknown function (DUF3325); InterPro: IPR021762 This family of short proteins are functionally uncharacterised. This family is restricted to Alpha-, Beta- and Gamma-proteobacteria.
Probab=54.00 E-value=23 Score=24.23 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=20.7
Q ss_pred hhhhhhhccCCCCccCcCCCCCCC
Q 036469 3 TLGALALATEQPTNDLMSKPPVGR 26 (171)
Q Consensus 3 ~~palaL~~ep~~~~~M~r~Pr~~ 26 (171)
++.+++++.|+..+|+..|+|.++
T Consensus 11 gf~~LALam~rH~~~v~~~~~~~~ 34 (106)
T PF11804_consen 11 GFAALALAMDRHHRQVFGRPLSPA 34 (106)
T ss_pred HHHHHHhcCcHHHHHHcCCCCCHH
Confidence 467899999999999999988663
No 24
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=47.70 E-value=1.2e+02 Score=23.75 Aligned_cols=41 Identities=5% Similarity=0.049 Sum_probs=19.9
Q ss_pred HHHHHHHHhhhcCCccccccccccCHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 036469 78 FCQIFNEFNARKLEKKNIFKGIHKNKLFLAIIGITIVLQLIMVEFLKKFAD 128 (171)
Q Consensus 78 ~~q~~~~~~~R~~~~~~~~~~~~~N~~l~~~~~~~~~l~~~~v~~l~~~f~ 128 (171)
+.|+..+|..-.. .+|++.+.++++++.-+++.-.++-+++
T Consensus 10 ~~Qi~q~y~~trk----------~dp~l~~~ml~a~l~~~~v~v~ig~l~~ 50 (224)
T PF13829_consen 10 RKQIWQAYKMTRK----------EDPKLPWLMLGAFLGPIAVFVLIGLLFG 50 (224)
T ss_pred HHHHHHHHHHHHH----------HCcchHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3577777765442 2344444455544444433333444455
No 25
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=43.56 E-value=74 Score=25.60 Aligned_cols=24 Identities=4% Similarity=-0.241 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccc
Q 036469 137 WAACIGIAAMSWPIGFLFKCIPVS 160 (171)
Q Consensus 137 w~~~~~~~~~~~~~~e~~K~i~r~ 160 (171)
|++...+++..++..-..-+++||
T Consensus 292 ~gy~~~l~~m~~i~~~~~~~fkrk 315 (318)
T TIGR00383 292 YGYPAVLIVMAVIALGPLIYFRRK 315 (318)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHc
Confidence 444444333333333333344443
No 26
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=38.37 E-value=3e+02 Score=24.84 Aligned_cols=99 Identities=15% Similarity=0.139 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCC---ccchhhHHHHHHH--HHHHHHHHHhhhcCCcccccc-ccccC-HHHHH
Q 036469 35 MWRNLIPQAIYQVAILLTLQFKGRSIFGV---QESAKDTMIFNTF--VFCQIFNEFNARKLEKKNIFK-GIHKN-KLFLA 107 (171)
Q Consensus 35 ~~~~i~~~g~~~~~~~~~~~~~~~~~~g~---~~~~a~T~~F~~l--v~~q~~~~~~~R~~~~~~~~~-~~~~N-~~l~~ 107 (171)
.+.++=+.|.++....+..|..+..+.|. +...++..+...+ ++.-.|-........+++++. .+++| +.+..
T Consensus 235 ~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~r~~~~ 314 (599)
T PF06609_consen 235 QLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWEWFGAPKDPLFPHRLFKDRRGFAA 314 (599)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhccCCCCcCCHHHhccchHHHH
Confidence 34455455766666666666666654342 2344555543333 222222222222211245553 56776 43333
Q ss_pred HHHHHHHHHHHH-----H-H-hhhhhhccccCC
Q 036469 108 IIGITIVLQLIM-----V-E-FLKKFADTERLN 133 (171)
Q Consensus 108 ~~~~~~~l~~~~-----v-~-~l~~~f~~~~l~ 133 (171)
.+.++++.-..+ . | ....+|+..+.+
T Consensus 315 ~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~ 347 (599)
T PF06609_consen 315 LLVISFISGMNFFSVNILWPQQVVNVFGSDPIS 347 (599)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcc
Confidence 333333332211 1 2 235567776653
No 27
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=36.94 E-value=11 Score=30.59 Aligned_cols=8 Identities=25% Similarity=0.542 Sum_probs=0.0
Q ss_pred CCCCCCCC
Q 036469 20 SKPPVGRS 27 (171)
Q Consensus 20 ~r~Pr~~~ 27 (171)
+||||-|.
T Consensus 13 ~r~pr~p~ 20 (381)
T PF05297_consen 13 RRPPRCPQ 20 (381)
T ss_dssp --------
T ss_pred CCCCCCCC
Confidence 57887653
No 28
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=35.75 E-value=23 Score=24.74 Aligned_cols=62 Identities=11% Similarity=-0.041 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhccccCChhHHHHHHHHHHHHHHHHHHHHhccccccchhh
Q 036469 105 FLAIIGITIVLQLIMVEFLKKFADTERLNWGQWAACIGIAAMSWPIGFLFKCIPVSGEQLLF 166 (171)
Q Consensus 105 l~~~~~~~~~l~~~~v~~l~~~f~~~~l~~~~w~~~~~~~~~~~~~~e~~K~i~r~~~~~~~ 166 (171)
+.+.+++...+.++++-...-+|+..|..+..........+......-+.+|.++.+..-+|
T Consensus 30 inliiG~vT~l~VLvtii~afvf~~~~p~p~~iffavcI~l~~~s~~lLI~WYR~gdl~Pkf 91 (118)
T PF10856_consen 30 INLIIGAVTSLFVLVTIISAFVFPQDPPKPLHIFFAVCILLICISAILLIFWYRQGDLDPKF 91 (118)
T ss_pred EEeehHHHHHHHHHHHHhheEEecCCCCCceEEehHHHHHHHHHHHHhheeehhcCCCChhH
Confidence 33333333333333322234456655555444333333333333333456677665543333
No 29
>PRK05470 fumarate reductase subunit D; Provisional
Probab=34.09 E-value=93 Score=21.78 Aligned_cols=13 Identities=23% Similarity=0.595 Sum_probs=10.9
Q ss_pred cCCCCCCCCCCCC
Q 036469 19 MSKPPVGRSEPLI 31 (171)
Q Consensus 19 M~r~Pr~~~~~ll 31 (171)
|++.|++.+||++
T Consensus 1 ~~~~pkRS~EPi~ 13 (118)
T PRK05470 1 INQNPKRSDEPVF 13 (118)
T ss_pred CCCCCCCCCCCCe
Confidence 5788888999887
No 30
>KOG2802 consensus Membrane protein HUEL (cation efflux superfamily) [General function prediction only]
Probab=33.66 E-value=2.5e+02 Score=24.06 Aligned_cols=81 Identities=11% Similarity=0.054 Sum_probs=48.4
Q ss_pred HHHHHHHHhhhcCCccc--cccccccCHHHHHHHHHHHHHHH----HHHH-hhhhhhccccCChhHHHHHHHHHH-----
Q 036469 78 FCQIFNEFNARKLEKKN--IFKGIHKNKLFLAIIGITIVLQL----IMVE-FLKKFADTERLNWGQWAACIGIAA----- 145 (171)
Q Consensus 78 ~~q~~~~~~~R~~~~~~--~~~~~~~N~~l~~~~~~~~~l~~----~~v~-~l~~~f~~~~l~~~~w~~~~~~~~----- 145 (171)
.-|...++..++..+.+ ...--++|.....+.+-.+++-+ +-+| +.+.+++-.|++...|.+|+..+.
T Consensus 247 ~NQ~lLa~Gis~S~q~PD~lhPYGYsnmRyVsSLISgvGIfc~G~GlSiyhGv~gLlhpePi~~l~~ay~il~gSl~~eG 326 (503)
T KOG2802|consen 247 CNQLLLALGISKSVQTPDPLHPYGYSNMRYVSSLISGVGIFCMGCGLSIYHGVMGLLHPEPIESLLWAYCILAGSLVSEG 326 (503)
T ss_pred HHHHHHHhhhhhcccCCCCCCCCcccchhHHHHHHhccceeeecccchhhhccccccCCCCCcchHHHHHHHhhHHHhcc
Confidence 46777777777654322 12212456555545444433321 2234 688999999999999999977654
Q ss_pred --HHHHHHHHHHhcc
Q 036469 146 --MSWPIGFLFKCIP 158 (171)
Q Consensus 146 --~~~~~~e~~K~i~ 158 (171)
+...+.|++|-.+
T Consensus 327 asllvAi~evkr~Ak 341 (503)
T KOG2802|consen 327 ASLLVAINEVKRNAK 341 (503)
T ss_pred hHHHHHHHHHHHHHH
Confidence 3456666655443
No 31
>COG4280 Predicted membrane protein [Function unknown]
Probab=30.83 E-value=1.9e+02 Score=22.39 Aligned_cols=53 Identities=19% Similarity=0.165 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccccCChhHHHHHHHHHHHHHHHHHHHHhcccc
Q 036469 106 LAIIGITIVLQLIMVEFLKKFADTERLNWGQWAACIGIAAMSWPIGFLFKCIPVS 160 (171)
Q Consensus 106 ~~~~~~~~~l~~~~v~~l~~~f~~~~l~~~~w~~~~~~~~~~~~~~e~~K~i~r~ 160 (171)
+++..+.+.+....+-.+++.+...|++..+.. .+.-+..+-+-.++|.++|.
T Consensus 37 l~ga~lglalvl~l~lvlGk~L~lvPln~lqiv--~gvLLllFG~rw~Rsavrr~ 89 (236)
T COG4280 37 LIGAVLGLALVLILTLVLGKLLYLVPLNYLQIV--SGVLLLLFGYRWIRSAVRRF 89 (236)
T ss_pred HHHHHHHHHHHHHHHHHHccceeeeechHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444457888888999876632 22223333344455555543
No 32
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=30.07 E-value=1.4e+02 Score=20.41 Aligned_cols=47 Identities=15% Similarity=0.293 Sum_probs=31.1
Q ss_pred HHHHhhhhhhccccCChhHHHHH-HHHHHHHHHHHHHHHhccccccch
Q 036469 118 IMVEFLKKFADTERLNWGQWAAC-IGIAAMSWPIGFLFKCIPVSGEQL 164 (171)
Q Consensus 118 ~~v~~l~~~f~~~~l~~~~w~~~-~~~~~~~~~~~e~~K~i~r~~~~~ 164 (171)
.+.|..-..+|..+++..-|.-+ +.++++.++...+.+-.-+++.+.
T Consensus 18 g~~Y~~l~~~G~d~~~AGi~sq~~lv~glvgW~~sYlfRV~t~~MTy~ 65 (104)
T PF11460_consen 18 GLLYGGLQAAGLDSLSAGIWSQALLVLGLVGWVSSYLFRVVTGKMTYM 65 (104)
T ss_pred HHHHHHHHHcCCCchhhhHHHHHHHHHHHHHHHhHHHhhhccCCCcHH
Confidence 34565555889999999888665 445556677777776665554443
No 33
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=29.88 E-value=1.4e+02 Score=24.48 Aligned_cols=8 Identities=13% Similarity=0.227 Sum_probs=3.6
Q ss_pred CCCccCcC
Q 036469 13 QPTNDLMS 20 (171)
Q Consensus 13 p~~~~~M~ 20 (171)
.-+..+++
T Consensus 157 ~ls~~if~ 164 (316)
T PRK11085 157 KLSRVIME 164 (316)
T ss_pred HHHHHhcc
Confidence 33444554
No 34
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=28.94 E-value=76 Score=26.05 Aligned_cols=31 Identities=10% Similarity=0.010 Sum_probs=20.0
Q ss_pred hhhhhhccccCChhHHHHHHHHHHHHHHHHH
Q 036469 122 FLKKFADTERLNWGQWAACIGIAAMSWPIGF 152 (171)
Q Consensus 122 ~l~~~f~~~~l~~~~w~~~~~~~~~~~~~~e 152 (171)
.++.+++..|.+..|+.+.+++..+...+.-
T Consensus 13 ~l~~~~g~~PFSvgdi~~~~~il~ll~~~~~ 43 (318)
T PF12725_consen 13 LLRRLFGWFPFSVGDILYYLLILFLLYYLIR 43 (318)
T ss_pred HHHHhccCcChhHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888887776655544443333
No 35
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=26.78 E-value=1.1e+02 Score=23.49 Aligned_cols=28 Identities=18% Similarity=0.204 Sum_probs=18.5
Q ss_pred cccccccccCHHHHHHHHHHHHHHHHHH
Q 036469 93 KNIFKGIHKNKLFLAIIGITIVLQLIMV 120 (171)
Q Consensus 93 ~~~~~~~~~N~~l~~~~~~~~~l~~~~v 120 (171)
.+++..++.|.+.+++.++.+++.+.+.
T Consensus 38 ~~~~~~~~~~~~~~i~qlInFlIlv~lL 65 (205)
T PRK06231 38 KSIINELFPNFWVFIAHLIAFSILLLLG 65 (205)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 3455567788887777777766665443
No 36
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=23.97 E-value=1.6e+02 Score=24.01 Aligned_cols=23 Identities=13% Similarity=0.020 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcccc
Q 036469 138 AACIGIAAMSWPIGFLFKCIPVS 160 (171)
Q Consensus 138 ~~~~~~~~~~~~~~e~~K~i~r~ 160 (171)
++.+.+++..+++.-..-+++|+
T Consensus 297 Gy~~~l~~m~~~~~~~~~~frrk 319 (322)
T COG0598 297 GYPIALILMLLLALLLYLYFRRK 319 (322)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhc
Confidence 33333333333333334455554
No 37
>KOG3744 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.53 E-value=1.2e+02 Score=24.23 Aligned_cols=30 Identities=17% Similarity=0.104 Sum_probs=19.3
Q ss_pred cccCChhHHHHHHHHHHHHHHHHHHHHhcc
Q 036469 129 TERLNWGQWAACIGIAAMSWPIGFLFKCIP 158 (171)
Q Consensus 129 ~~~l~~~~w~~~~~~~~~~~~~~e~~K~i~ 158 (171)
+++++..||.+....+++++.....+-.+.
T Consensus 49 ~~~l~~YdWlYLgFmamLPL~lH~fFI~~~ 78 (311)
T KOG3744|consen 49 TESPELYDWLYLGFMAMLPLVLHWFFIEWY 78 (311)
T ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 357778888887777777766655433333
No 38
>PF08552 Kei1: Inositolphosphorylceramide synthase subunit Kei1; InterPro: IPR013862 This entry indicates Golgi proteins of unknown function.
Probab=22.79 E-value=3.4e+02 Score=20.54 Aligned_cols=55 Identities=13% Similarity=0.099 Sum_probs=31.7
Q ss_pred HHHHHHHHHH------HHhhhhhhccccCChhHHHHHHHHHHHHHHHHHHHHhccccccchh
Q 036469 110 GITIVLQLIM------VEFLKKFADTERLNWGQWAACIGIAAMSWPIGFLFKCIPVSGEQLL 165 (171)
Q Consensus 110 ~~~~~l~~~~------v~~l~~~f~~~~l~~~~w~~~~~~~~~~~~~~e~~K~i~r~~~~~~ 165 (171)
++++++..++ +|++-.+|-=.|+++.||..=+-.-+...+.....+-+++ +.+.+
T Consensus 12 G~eli~l~~l~NK~sG~YGlLAlfTG~~ls~~Q~s~YlySi~~L~~~~~~l~~Irk-~~~~~ 72 (189)
T PF08552_consen 12 GVELILLFLLFNKVSGLYGLLALFTGHPLSFLQLSMYLYSILALVLFAWGLPHIRK-QSPLQ 72 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhHHhcc-CCHHH
Confidence 4444444443 3667777777899999986654444444444455556663 44433
No 39
>PF04531 Phage_holin_1: Bacteriophage holin; InterPro: IPR006485 Phage proteins for bacterial lysis typically include a membrane-disrupting protein, or holin, and one or more cell wall degrading enzymes that reach the cell wall because of holin action. Holins are found in a large number of mutually non-homologous families. This entry is represented by the Bacteriophage phi-LC3, holin. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=21.95 E-value=1.1e+02 Score=19.90 Aligned_cols=18 Identities=33% Similarity=0.324 Sum_probs=13.3
Q ss_pred cccCHHHHHHHHHHHHHH
Q 036469 99 IHKNKLFLAIIGITIVLQ 116 (171)
Q Consensus 99 ~~~N~~l~~~~~~~~~l~ 116 (171)
.++|+.+|.+++.++++.
T Consensus 7 R~kN~~~w~ali~~i~l~ 24 (84)
T PF04531_consen 7 RFKNKAFWVALISAILLL 24 (84)
T ss_pred cccCHHHHHHHHHHHHHH
Confidence 479999998877665553
No 40
>PRK09546 zntB zinc transporter; Reviewed
Probab=21.62 E-value=2.5e+02 Score=22.80 Aligned_cols=6 Identities=0% Similarity=-0.064 Sum_probs=2.4
Q ss_pred hhhhcc
Q 036469 124 KKFADT 129 (171)
Q Consensus 124 ~~~f~~ 129 (171)
..++|+
T Consensus 281 aGiyGM 286 (324)
T PRK09546 281 TGLFGV 286 (324)
T ss_pred Hhhhcc
Confidence 344443
No 41
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=21.13 E-value=1.3e+02 Score=21.50 Aligned_cols=13 Identities=23% Similarity=0.067 Sum_probs=7.3
Q ss_pred ccCChhHHHHHHH
Q 036469 130 ERLNWGQWAACIG 142 (171)
Q Consensus 130 ~~l~~~~w~~~~~ 142 (171)
-|+++..|++.+.
T Consensus 17 wP~a~GWwll~~l 29 (146)
T PF14316_consen 17 WPLAPGWWLLLAL 29 (146)
T ss_pred CCccHHHHHHHHH
Confidence 4666666655444
No 42
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=21.06 E-value=3.4e+02 Score=20.22 Aligned_cols=9 Identities=11% Similarity=0.146 Sum_probs=5.1
Q ss_pred Hhhhhhhcc
Q 036469 121 EFLKKFADT 129 (171)
Q Consensus 121 ~~l~~~f~~ 129 (171)
..+-.+||.
T Consensus 35 ~llI~lFg~ 43 (165)
T PF11286_consen 35 QLLIALFGG 43 (165)
T ss_pred HHHHHHcCC
Confidence 345566773
Done!