Query 036470
Match_columns 697
No_of_seqs 216 out of 316
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 03:16:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036470.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036470hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iot_A Maltose-binding protein 28.8 22 0.00075 37.2 2.0 9 632-640 374-382 (449)
2 3iot_A Maltose-binding protein 28.2 12 0.0004 39.2 -0.2 8 522-529 287-294 (449)
3 2c7n_A Rabex-5, GEF 1, RAB gua 23.2 39 0.0014 28.9 2.2 20 628-647 50-69 (74)
4 3erv_A Putative C39-like pepti 17.6 80 0.0027 31.8 3.4 36 507-542 114-149 (236)
5 2o0q_A Hypothetical protein CC 15.3 70 0.0024 28.9 2.2 25 550-575 50-74 (115)
6 4dsu_A GTPase KRAS, isoform 2B 14.6 49 0.0017 29.1 0.9 12 686-697 178-189 (189)
7 2gf0_A GTP-binding protein DI- 11.6 50 0.0017 29.5 0.0 10 688-697 190-199 (199)
8 1y0n_A Hypothetical UPF0270 pr 10.5 1.6E+02 0.0054 25.4 2.7 44 507-553 17-68 (78)
9 3b79_A Toxin secretion ATP-bin 10.2 1.6E+02 0.0056 25.1 2.9 40 537-579 71-113 (129)
10 3k2t_A LMO2511 protein; lister 10.1 2.6E+02 0.009 22.5 3.8 26 535-560 26-54 (57)
No 1
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=28.79 E-value=22 Score=37.18 Aligned_cols=9 Identities=22% Similarity=0.076 Sum_probs=3.8
Q ss_pred HHHHHHHHh
Q 036470 632 DLQLAIALQ 640 (697)
Q Consensus 632 D~~LA~~LQ 640 (697)
+..++++.|
T Consensus 374 ~~~~~~~~~ 382 (449)
T 3iot_A 374 LEKLMKAFE 382 (449)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 444444433
No 2
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=28.17 E-value=12 Score=39.23 Aligned_cols=8 Identities=25% Similarity=0.106 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 036470 522 FYGLFCLQ 529 (697)
Q Consensus 522 ~~GL~~L~ 529 (697)
+.+...+.
T Consensus 287 ~e~~~~~~ 294 (449)
T 3iot_A 287 DEGLEAVN 294 (449)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33444443
No 3
>2c7n_A Rabex-5, GEF 1, RAB guanine nucleotide exchange factor 1; protein-binding, ubiquitin binding domain, endocytosis, NUCL protein, polyprotein; 2.1A {Homo sapiens} SCOP: g.39.1.15 PDB: 2c7m_A 2fif_B 2fid_B
Probab=23.20 E-value=39 Score=28.93 Aligned_cols=20 Identities=35% Similarity=0.393 Sum_probs=17.0
Q ss_pred CCccHHHHHHHHhHHHHHhc
Q 036470 628 DMNSDLQLAIALQQQEFEQQ 647 (697)
Q Consensus 628 ~~~sD~~LA~~LQqeEde~~ 647 (697)
+..+|.+||.+||.||.+..
T Consensus 50 q~~~~~~~~~~~~~~~~~~~ 69 (74)
T 2c7n_A 50 QIQEDWELAERLQREEEEAF 69 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 46789999999999987764
No 4
>3erv_A Putative C39-like peptidase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.10A {Bacillus anthracis}
Probab=17.56 E-value=80 Score=31.81 Aligned_cols=36 Identities=28% Similarity=0.277 Sum_probs=29.5
Q ss_pred HHHHHHHhcCCCcccHHHHHHHHhcCCCCceEEEEe
Q 036470 507 ELIKSFLKNNANQLTFYGLFCLQDGLKERELCVFFR 542 (697)
Q Consensus 507 ~~i~~FL~~saTQLT~~GL~~L~~~l~~~~~aVfFR 542 (697)
.+++.|+...+.-||-..|..|.+.|..|..+|.+-
T Consensus 114 ~~a~~y~~~~~~dltG~sl~~L~~~I~~G~PVIv~~ 149 (236)
T 3erv_A 114 QLAKKYLPNKAVDLTGKSIEELYKSVKAGQPVVIIT 149 (236)
T ss_dssp HHHHHHCTTTEEECTTSCHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHhhcceeecCCCCHHHHHHHHHCCCeEEEEE
Confidence 466777765677889889999999999999999854
No 5
>2o0q_A Hypothetical protein CC0527; PSI, protein structure initiative, northeast structural genomics consortium, NESG, structural genomics; 1.80A {Caulobacter vibrioides} SCOP: d.166.1.7 PDB: 2jqn_A 2o0p_A
Probab=15.35 E-value=70 Score=28.95 Aligned_cols=25 Identities=36% Similarity=0.656 Sum_probs=20.5
Q ss_pred eeeCCeEEEEeccccccCCCCceEEE
Q 036470 550 FKYDGELYLLATDQGYINQPDLVWEK 575 (697)
Q Consensus 550 ~K~~~~Ly~LVTD~gy~~~~~iVWEs 575 (697)
|+....|++|+-|..=+.. .|.||-
T Consensus 50 f~~~~~L~lL~id~~~l~~-~l~wE~ 74 (115)
T 2o0q_A 50 FRGQANLVLLAVEAEPLGE-DLKWEA 74 (115)
T ss_dssp CTTCCSEEEEEEESGGGCT-TEEEEE
T ss_pred cCCCCCEEEEEEcHHHCCC-ceEEec
Confidence 4557889999999987765 799994
No 6
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=14.62 E-value=49 Score=29.14 Aligned_cols=12 Identities=58% Similarity=0.836 Sum_probs=1.9
Q ss_pred CCCCCCCCcccC
Q 036470 686 SDGKSKDKCSIM 697 (697)
Q Consensus 686 ~~~k~K~~CiiM 697 (697)
+++|+|.+|+||
T Consensus 178 ~~kk~~~~c~i~ 189 (189)
T 4dsu_A 178 KKKKSKTKCVIM 189 (189)
T ss_dssp TCCC--------
T ss_pred ccccccceeeeC
Confidence 444677889998
No 7
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=11.56 E-value=50 Score=29.53 Aligned_cols=10 Identities=40% Similarity=0.946 Sum_probs=0.0
Q ss_pred CCCCCCcccC
Q 036470 688 GKSKDKCSIM 697 (697)
Q Consensus 688 ~k~K~~CiiM 697 (697)
+++|++|.||
T Consensus 190 ~~~k~~C~~~ 199 (199)
T 2gf0_A 190 DRVKGKCTLM 199 (199)
T ss_dssp ----------
T ss_pred cCCCCceeeC
Confidence 3556779998
No 8
>1y0n_A Hypothetical UPF0270 protein PA3463; MCSG, midwest center for structural genomics, protein struct initiative, PSI, structural genomics; 2.00A {Pseudomonas aeruginosa} SCOP: d.291.1.1
Probab=10.52 E-value=1.6e+02 Score=25.41 Aligned_cols=44 Identities=16% Similarity=0.204 Sum_probs=30.5
Q ss_pred HHHHHHHhcCCCcccHHHH--------HHHHhcCCCCceEEEEecCceeeEeeeC
Q 036470 507 ELIKSFLKNNANQLTFYGL--------FCLQDGLKERELCVFFRNNHFSTMFKYD 553 (697)
Q Consensus 507 ~~i~~FL~~saTQLT~~GL--------~~L~~~l~~~~~aVfFRNnHFsTl~K~~ 553 (697)
.+|+.|+-+ |-|+||- ..++..|+.|+++|+|--.|=+.=.+..
T Consensus 17 nLIeefv~R---egtDyg~E~sL~~kv~qv~~qL~~GeavIvfse~~Esv~I~~k 68 (78)
T 1y0n_A 17 NLLEDFVTR---EGTDNGDETPLDVRVERARHALRRGEAVILFDPESQQCQLMLR 68 (78)
T ss_dssp HHHHHHHHC---C-------CCHHHHHHHHHHHHHTTSEEEEECTTTCCEEEEEG
T ss_pred HHHHHHHhc---ccccccccccHHHHHHHHHHHHHcCCEEEEECCCCCeEeeeEH
Confidence 489999976 5567774 6788899999999999888866655543
No 9
>3b79_A Toxin secretion ATP-binding protein; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.37A {Vibrio parahaemolyticus rimd 2210633}
Probab=10.21 E-value=1.6e+02 Score=25.13 Aligned_cols=40 Identities=8% Similarity=-0.061 Sum_probs=22.2
Q ss_pred eEEE-EecCceeeEeeeCCe--EEEEeccccccCCCCceEEEcccc
Q 036470 537 LCVF-FRNNHFSTMFKYDGE--LYLLATDQGYINQPDLVWEKLNEV 579 (697)
Q Consensus 537 ~aVf-FRNnHFsTl~K~~~~--Ly~LVTD~gy~~~~~iVWEsL~~V 579 (697)
.||+ ++++||-+|+|.++. -+ ++-|.+... ..+|-++...
T Consensus 71 P~I~~~~~~h~vVl~~~~~~~~~~-~i~dp~~~~--g~~~~~~~ef 113 (129)
T 3b79_A 71 PAILVLKGGDSCVLNSINMETREA-EVTTLESGM--VPISIPLEDL 113 (129)
T ss_dssp SEEEEEGGGEEEEEEEEETTTTEE-EEECTTTTT--SCEEEEHHHH
T ss_pred CEEEEEcCCCEEEEEEEcCCCceE-EEEccCCCC--CcEEeeHHHH
Confidence 4565 455799999997543 22 234544222 2355555543
No 10
>3k2t_A LMO2511 protein; listeria monocytogenes,binding, structural genomics, PSI-2, protein structure initiative; 2.40A {Listeria monocytogenes}
Probab=10.11 E-value=2.6e+02 Score=22.47 Aligned_cols=26 Identities=12% Similarity=0.161 Sum_probs=19.8
Q ss_pred CceEEEEec---CceeeEeeeCCeEEEEe
Q 036470 535 RELCVFFRN---NHFSTMFKYDGELYLLA 560 (697)
Q Consensus 535 ~~~aVfFRN---nHFsTl~K~~~~Ly~LV 560 (697)
|.-+.+||| +.-+.+||+++-=|-|+
T Consensus 26 gh~F~vF~n~~t~~~nVvYrR~dG~yGlI 54 (57)
T 3k2t_A 26 GHSFYVYTDAETNGTNIVYSRKDGKYGLI 54 (57)
T ss_dssp TCSEEEEEBSSSCCEEEEEECTTSCEEEE
T ss_pred CCcEEEEEcCCCCCEEEEEEeCCCCEEEE
Confidence 445677888 78999999976666665
Done!