Query 036470
Match_columns 697
No_of_seqs 216 out of 316
Neff 4.0
Searched_HMMs 13730
Date Mon Mar 25 03:16:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036470.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/036470hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ni5a4 d.229.1.1 (A:227-314) 20.1 1.2E+02 0.0086 23.5 6.7 56 502-560 25-85 (88)
2 d3proc2 d.52.1.1 (C:86-163) Al 14.4 19 0.0014 29.1 0.3 10 145-154 30-39 (78)
3 d2ciwa1 a.39.3.1 (A:0-119) Clo 13.2 58 0.0042 27.9 3.1 35 39-79 25-60 (120)
4 d1y0na_ d.291.1.1 (A:) Hypothe 12.5 62 0.0045 25.9 2.9 45 507-554 17-69 (78)
5 d2c7na1 g.39.1.15 (A:18-73) Ra 9.8 70 0.0051 24.2 2.2 20 628-647 33-52 (56)
6 d1f39a_ b.87.1.1 (A:) lambda r 8.8 1.8E+02 0.013 22.8 4.7 34 532-565 39-75 (101)
7 d1le8a_ a.4.1.1 (A:) Mating ty 8.1 26 0.0019 25.5 -0.9 43 500-543 3-47 (53)
8 d2ilxa1 d.61.1.3 (A:1-219) 2', 6.8 68 0.0049 30.1 1.1 33 143-179 6-38 (219)
9 d2ngra_ c.37.1.8 (A:) CDC42 {H 6.7 81 0.0059 26.7 1.5 9 689-697 183-191 (191)
10 d1i6pa_ c.53.2.1 (A:) beta-car 5.4 1.1E+02 0.0077 27.7 1.6 29 146-174 175-204 (214)
No 1
>d1ni5a4 d.229.1.1 (A:227-314) tRNA-Ile-lysidine synthetase, TilS, substrate-binding domain {Escherichia coli [TaxId: 562]}
Probab=20.14 E-value=1.2e+02 Score=23.49 Aligned_cols=56 Identities=11% Similarity=0.304 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHhcCCCc-ccHHHHHHHHhcC---C-CCceEEEEecCceeeEeeeCCeEEEEe
Q 036470 502 TQQQGELIKSFLKNNANQ-LTFYGLFCLQDGL---K-ERELCVFFRNNHFSTMFKYDGELYLLA 560 (697)
Q Consensus 502 t~~q~~~i~~FL~~saTQ-LT~~GL~~L~~~l---~-~~~~aVfFRNnHFsTl~K~~~~Ly~LV 560 (697)
.+++..+|+-||....-. .+..-|..+.+.+ + +....|-|-+ ..|.+|.+.||.+-
T Consensus 25 ~~R~~nlLR~WL~~~~~~~Ps~~~L~ei~~ql~~a~~Da~p~i~~~~---~~irry~~~Ly~~~ 85 (88)
T d1ni5a4 25 DARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRLGA---FEIRRYQSQLWWIK 85 (88)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHTTTSCGGGCCEEEETT---EEEEESSSEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCCCCCcEEEECC---EEEEEECCEEEEEe
Confidence 458899999999887643 5777787776544 2 2344455533 57899999999874
No 2
>d3proc2 d.52.1.1 (C:86-163) Alpha-lytic protease prodomain {Lysobacter enzymogenes [TaxId: 69]}
Probab=14.40 E-value=19 Score=29.07 Aligned_cols=10 Identities=40% Similarity=0.893 Sum_probs=8.4
Q ss_pred eeeEeecCCC
Q 036470 145 LYHGWIVDPQ 154 (697)
Q Consensus 145 LvHGWLvDPq 154 (697)
=||||++|..
T Consensus 30 ~V~~WYVDv~ 39 (78)
T d3proc2 30 GVQSWYVDPR 39 (78)
T ss_dssp TEEEEEEEGG
T ss_pred CceeEEeecC
Confidence 4899999965
No 3
>d2ciwa1 a.39.3.1 (A:0-119) Cloroperoxidase {Fungus (Caldariomyces fumago) [TaxId: 5474]}
Probab=13.21 E-value=58 Score=27.87 Aligned_cols=35 Identities=31% Similarity=0.516 Sum_probs=23.3
Q ss_pred CCCCCCcHH-HHHHHHHhcCcCCCCCCcccccHHHHHHHHHH
Q 036470 39 NDNGPCPLL-AICNVLLLRNNLNLSPDTGEISQEKLLSLVAE 79 (697)
Q Consensus 39 NeNGPCPLI-AI~NVLLLr~~I~L~pd~~~VS~e~Ll~lV~d 79 (697)
+.-||||.| |++|==+| +-+-..||.++|+.-+-+
T Consensus 25 D~RgPCPgLNaLANHGyL------PrdG~nIt~~~l~~a~~~ 60 (120)
T d2ciwa1 25 DSRAPCPALNALANHGYI------PHDGRAISRETLQNAFLN 60 (120)
T ss_dssp CCCCSCHHHHHHHHTTSS------CTTCEEECHHHHHHHHHH
T ss_pred CccCCChhhHHHHhcCcc------CCCCcccCHHHHHHHHHH
Confidence 677999954 55664444 555556999988765543
No 4
>d1y0na_ d.291.1.1 (A:) Hypothetical UPF0270 protein PA3463 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=12.47 E-value=62 Score=25.87 Aligned_cols=45 Identities=16% Similarity=0.245 Sum_probs=31.2
Q ss_pred HHHHHHHhcCCCcccHHH--------HHHHHhcCCCCceEEEEecCceeeEeeeCC
Q 036470 507 ELIKSFLKNNANQLTFYG--------LFCLQDGLKERELCVFFRNNHFSTMFKYDG 554 (697)
Q Consensus 507 ~~i~~FL~~saTQLT~~G--------L~~L~~~l~~~~~aVfFRNnHFsTl~K~~~ 554 (697)
.+|+.|+-+ +-|+|| ...++..|+.|++.|.|--.|=|.-.++..
T Consensus 17 ~lIeeFv~R---EGTDyG~E~sl~~kv~qv~~qL~~G~~vI~fde~~Es~~I~~k~ 69 (78)
T d1y0na_ 17 NLLEDFVTR---EGTDNGDETPLDVRVERARHALRRGEAVILFDPESQQCQLMLRS 69 (78)
T ss_dssp HHHHHHHHC---C-------CCHHHHHHHHHHHHHTTSEEEEECTTTCCEEEEEGG
T ss_pred HHHHHHHhc---cCccccccccHHHHHHHHHHHHHcCCEEEEECCCCCeEeeeeHH
Confidence 489999965 677887 356788899999999999888666555433
No 5
>d2c7na1 g.39.1.15 (A:18-73) RabGEF1 (Rabex-5), ubiquitin-binding domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.77 E-value=70 Score=24.23 Aligned_cols=20 Identities=35% Similarity=0.393 Sum_probs=17.1
Q ss_pred CCccHHHHHHHHhHHHHHhc
Q 036470 628 DMNSDLQLAIALQQQEFEQQ 647 (697)
Q Consensus 628 ~~~sD~~LA~~LQqeEde~~ 647 (697)
+..+|.+||.+||.+|.++.
T Consensus 33 ~~q~~~~la~~~~~~e~~a~ 52 (56)
T d2c7na1 33 QIQEDWELAERLQREEEEAF 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchHhhh
Confidence 46789999999999988764
No 6
>d1f39a_ b.87.1.1 (A:) lambda repressor C-terminal domain {Bacteriophage lambda [TaxId: 10710]}
Probab=8.85 E-value=1.8e+02 Score=22.80 Aligned_cols=34 Identities=15% Similarity=0.502 Sum_probs=22.4
Q ss_pred CCCCceEEEEecCc-e--eeEeeeCCeEEEEeccccc
Q 036470 532 LKERELCVFFRNNH-F--STMFKYDGELYLLATDQGY 565 (697)
Q Consensus 532 l~~~~~aVfFRNnH-F--sTl~K~~~~Ly~LVTD~gy 565 (697)
+++|.++|++.+++ + -.+++.++.+|++....-|
T Consensus 39 ~~~g~ivva~~~~~~~~vKr~~~~~~~~~L~s~N~~y 75 (101)
T d1f39a_ 39 VEPGDFCIARLGGDEFTFKKLIRDSGQVFLQPLNPQY 75 (101)
T ss_dssp CCTTCEEEEECTTSCEEEEEEEEETTEEEEECSSTTS
T ss_pred cCCCCEEEEEECCCeEEEEEEEEcCCEEEEEECCCCC
Confidence 57899999888875 2 2233347888876655544
No 7
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=8.11 E-value=26 Score=25.50 Aligned_cols=43 Identities=14% Similarity=0.215 Sum_probs=32.7
Q ss_pred chhHHHHHHHHHHHhcCCCcccHHHHHHHHhc--CCCCceEEEEec
Q 036470 500 EITQQQGELIKSFLKNNANQLTFYGLFCLQDG--LKERELCVFFRN 543 (697)
Q Consensus 500 ~~t~~q~~~i~~FL~~saTQLT~~GL~~L~~~--l~~~~~aVfFRN 543 (697)
.++++|..+++.+++.++. ++..-...|... |.+.++.|.|.|
T Consensus 3 ~~s~~q~~~Le~~F~~~~~-P~~~~~~~LA~~lgl~~~qV~~WFqN 47 (53)
T d1le8a_ 3 SISPQARAFLEQVFRRKQS-LNSKEKEEVAKKCGITPLQVRVWFIN 47 (53)
T ss_dssp CCCHHHHHHHHHHHHHCSC-CCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 4688999999999988754 888888888774 556666666655
No 8
>d2ilxa1 d.61.1.3 (A:1-219) 2',3'-cyclic nucleotide 3'-phosphodiesterase, catalytic domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=6.83 E-value=68 Score=30.08 Aligned_cols=33 Identities=27% Similarity=0.633 Sum_probs=24.9
Q ss_pred CCeeeEeecCCCChhhHhhhcCCCHHHHHHHHHhhhc
Q 036470 143 IPLYHGWIVDPQDYDTANAIGSKSYNAIMGELVALET 179 (697)
Q Consensus 143 IpLvHGWLvDPqD~e~~~aig~~SYN~LvekLv~~~~ 179 (697)
+|||-||.+.+.|.+.....+ .+..++|..++.
T Consensus 6 lPlyfGWFl~k~~se~l~~~~----~~fl~~L~~l~a 38 (219)
T d2ilxa1 6 LPLYFGWFLTKKSSETLRKAG----QVFLEELGNHKA 38 (219)
T ss_dssp CCSEEEEEECHHHHHHHHHHH----HHHHHHHHTCHH
T ss_pred eeeeeeeccCCCHHHHHHHHH----HHHHHHHHhHHH
Confidence 799999999998888765443 477777776554
No 9
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.69 E-value=81 Score=26.70 Aligned_cols=9 Identities=22% Similarity=0.811 Sum_probs=6.6
Q ss_pred CCCCCcccC
Q 036470 689 KSKDKCSIM 697 (697)
Q Consensus 689 k~K~~CiiM 697 (697)
|++++|+||
T Consensus 183 k~~~~C~i~ 191 (191)
T d2ngra_ 183 KKSRRCVLL 191 (191)
T ss_dssp TCCCSCCCC
T ss_pred CCCCCCeEC
Confidence 456679987
No 10
>d1i6pa_ c.53.2.1 (A:) beta-carbonic anhydrase {Escherichia coli [TaxId: 562]}
Probab=5.45 E-value=1.1e+02 Score=27.74 Aligned_cols=29 Identities=14% Similarity=0.273 Sum_probs=18.0
Q ss_pred eeEeecCCCChhhHh-hhcCCCHHHHHHHH
Q 036470 146 YHGWIVDPQDYDTAN-AIGSKSYNAIMGEL 174 (697)
Q Consensus 146 vHGWLvDPqD~e~~~-aig~~SYN~LvekL 174 (697)
+|||+.|...-.... -+...+|..|.+++
T Consensus 175 IhG~~YDi~TG~v~~ld~~~~~~e~l~~~~ 204 (214)
T d1i6pa_ 175 IHGWAYGIHDGLLRDLDVTATNRETLEQRY 204 (214)
T ss_dssp EEEEEECTTTCCEEECSCCBSSHHHHHHHH
T ss_pred EEEEEEECCCceEEEecCCCCCcchhHHHH
Confidence 799999976544321 12346676666554
Done!