Query 036473
Match_columns 204
No_of_seqs 259 out of 1891
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 02:28:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036473.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036473hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0158 Cytochrome P450 CYP3/C 100.0 5.2E-55 1.1E-59 366.3 17.9 197 2-202 302-499 (499)
2 KOG0156 Cytochrome P450 CYP2 s 100.0 2.7E-53 5.8E-58 358.9 18.5 196 1-202 293-488 (489)
3 PLN03234 cytochrome P450 83B1; 100.0 1.4E-52 3E-57 359.2 19.1 202 1-202 295-499 (499)
4 PLN02394 trans-cinnamate 4-mon 100.0 2.1E-52 4.5E-57 358.4 18.5 200 1-202 300-502 (503)
5 PLN02183 ferulate 5-hydroxylas 100.0 3.3E-52 7.1E-57 358.2 18.2 201 1-202 311-512 (516)
6 PLN02971 tryptophan N-hydroxyl 100.0 4.4E-52 9.6E-57 359.1 18.9 199 1-202 334-534 (543)
7 KOG0157 Cytochrome P450 CYP4/C 100.0 1.4E-51 3E-56 352.1 18.4 196 2-203 299-497 (497)
8 PLN02966 cytochrome P450 83A1 100.0 2.3E-51 5E-56 351.9 19.7 200 1-200 296-498 (502)
9 PTZ00404 cytochrome P450; Prov 100.0 2E-51 4.3E-56 350.7 18.7 191 2-201 291-482 (482)
10 PLN00168 Cytochrome P450; Prov 100.0 4.8E-51 1E-55 351.2 19.1 200 2-204 314-519 (519)
11 PLN00110 flavonoid 3',5'-hydro 100.0 7.1E-51 1.5E-55 348.8 19.7 200 1-203 296-498 (504)
12 PLN03112 cytochrome P450 famil 100.0 1.1E-50 2.5E-55 348.5 19.8 203 1-203 303-509 (514)
13 PLN02687 flavonoid 3'-monooxyg 100.0 1.3E-50 2.9E-55 348.3 20.0 201 2-202 305-509 (517)
14 PLN02169 fatty acid (omega-1)- 100.0 5.8E-51 1.3E-55 349.0 17.7 191 1-202 308-500 (500)
15 KOG0159 Cytochrome P450 CYP11/ 100.0 3.8E-51 8.2E-56 338.1 15.3 196 1-203 323-519 (519)
16 PLN02426 cytochrome P450, fami 100.0 3.3E-50 7.3E-55 344.3 18.2 199 2-204 301-502 (502)
17 PLN02738 carotene beta-ring hy 100.0 6.5E-50 1.4E-54 349.3 19.2 197 1-203 398-596 (633)
18 PLN02290 cytokinin trans-hydro 100.0 3.7E-50 8E-55 345.5 17.3 193 1-203 323-516 (516)
19 PLN03195 fatty acid omega-hydr 100.0 4E-50 8.6E-55 345.3 16.9 196 1-202 299-516 (516)
20 PLN02500 cytochrome P450 90B1 100.0 7.5E-50 1.6E-54 341.6 17.4 192 1-200 286-488 (490)
21 PLN02655 ent-kaurene oxidase 100.0 1.2E-49 2.7E-54 338.4 17.8 197 1-203 269-465 (466)
22 PF00067 p450: Cytochrome P450 100.0 2.6E-50 5.6E-55 338.0 12.8 171 2-172 270-440 (463)
23 PLN03018 homomethionine N-hydr 100.0 3.4E-49 7.4E-54 340.1 19.2 199 1-202 321-524 (534)
24 PLN02774 brassinosteroid-6-oxi 100.0 9.3E-49 2E-53 332.8 17.5 189 1-200 271-462 (463)
25 PLN03141 3-epi-6-deoxocathaste 100.0 2.1E-48 4.6E-53 329.7 17.4 190 1-203 258-451 (452)
26 PLN02936 epsilon-ring hydroxyl 100.0 3.2E-48 7E-53 331.5 17.3 196 1-202 285-482 (489)
27 PLN02196 abscisic acid 8'-hydr 100.0 2E-47 4.4E-52 324.6 15.9 189 1-201 271-462 (463)
28 PLN02302 ent-kaurenoic acid ox 100.0 4E-47 8.7E-52 324.6 16.7 191 2-203 295-489 (490)
29 PLN02987 Cytochrome P450, fami 100.0 2.2E-46 4.7E-51 318.6 18.4 192 2-202 275-469 (472)
30 KOG0684 Cytochrome P450 [Secon 100.0 3E-46 6.5E-51 303.2 15.0 196 2-202 281-485 (486)
31 COG2124 CypX Cytochrome P450 [ 100.0 2.2E-40 4.9E-45 277.3 13.1 144 2-172 244-387 (411)
32 PLN02648 allene oxide synthase 100.0 7E-40 1.5E-44 278.3 14.9 165 5-173 283-463 (480)
33 PF05952 ComX: Bacillus compet 60.3 10 0.00022 22.6 2.3 24 16-39 4-27 (57)
34 PF09201 SRX: SRX; InterPro: 52.0 12 0.00026 26.5 2.0 22 143-164 19-40 (148)
35 PF12508 DUF3714: Protein of u 44.9 21 0.00046 27.2 2.5 43 53-97 52-94 (200)
36 COG2101 SPT15 TATA-box binding 44.8 7.6 0.00016 28.7 0.1 36 113-148 35-70 (185)
37 PF11138 DUF2911: Protein of u 44.8 35 0.00076 24.6 3.5 35 77-111 51-92 (145)
38 PF15300 INT_SG_DDX_CT_C: INTS 43.5 11 0.00023 23.2 0.6 15 53-67 40-54 (65)
39 KOG3506 40S ribosomal protein 40.6 12 0.00027 21.9 0.5 10 136-145 13-22 (56)
40 PRK06789 flagellar motor switc 38.5 37 0.0008 21.4 2.5 39 60-98 22-62 (74)
41 PF08285 DPM3: Dolichol-phosph 36.2 54 0.0012 21.6 3.1 27 12-38 54-80 (91)
42 PF14483 Cut8_M: Cut8 dimerisa 34.5 73 0.0016 17.2 2.9 22 12-33 13-35 (38)
43 PF11227 DUF3025: Protein of u 33.6 24 0.00051 27.1 1.2 19 101-119 193-211 (212)
44 PF14129 DUF4296: Domain of un 33.5 1.3E+02 0.0028 19.3 4.6 36 4-39 43-78 (87)
45 PF07849 DUF1641: Protein of u 33.5 57 0.0012 17.9 2.5 18 15-32 13-30 (42)
46 PF12444 Sox_N: Sox developmen 33.5 28 0.00062 22.5 1.4 20 152-171 60-79 (84)
47 PF14824 Sirohm_synth_M: Siroh 30.3 73 0.0016 16.3 2.3 15 24-38 15-29 (30)
48 cd04518 TBP_archaea archaeal T 29.2 14 0.0003 27.5 -0.6 35 113-147 29-63 (174)
49 PF14550 Peptidase_U35_2: Puta 28.8 45 0.00098 23.2 1.9 30 77-109 72-101 (122)
50 COG0851 MinE Septum formation 28.3 65 0.0014 21.0 2.4 17 25-41 36-52 (88)
51 PHA03162 hypothetical protein; 27.4 38 0.00082 23.8 1.3 24 138-161 2-25 (135)
52 PF10796 Anti-adapt_IraP: Sigm 26.8 1.1E+02 0.0023 20.0 3.2 60 5-66 24-84 (87)
53 COG1759 5-formaminoimidazole-4 26.5 1.2E+02 0.0026 25.1 4.1 25 131-158 327-351 (361)
54 cd00652 TBP_TLF TATA box bindi 25.4 55 0.0012 24.3 2.0 56 113-169 29-87 (174)
55 PRK13467 F0F1 ATP synthase sub 24.8 1.2E+02 0.0027 18.6 3.1 24 11-34 20-43 (66)
56 PF02663 FmdE: FmdE, Molybdenu 24.2 72 0.0016 22.2 2.3 21 142-162 5-25 (131)
57 PF10777 YlaC: Inner membrane 22.7 43 0.00094 24.1 0.9 38 15-52 112-149 (155)
58 TIGR01260 ATP_synt_c ATP synth 22.3 1.4E+02 0.0031 17.7 3.0 24 11-34 10-33 (58)
59 PRK00394 transcription factor; 22.0 25 0.00055 26.2 -0.4 34 113-146 28-61 (179)
60 cd00642 GTP_cyclohydro1 GTP cy 21.9 1.4E+02 0.0031 22.4 3.6 26 14-39 103-128 (185)
61 PF08492 SRP72: SRP72 RNA-bind 21.4 62 0.0013 19.4 1.3 8 116-123 44-51 (59)
62 PLN03044 GTP cyclohydrolase I; 21.1 1.8E+02 0.0039 21.9 4.0 27 13-39 103-129 (188)
63 COG0302 FolE GTP cyclohydrolas 21.0 1.7E+02 0.0036 22.2 3.7 26 14-39 112-137 (195)
64 COG5598 Trimethylamine:corrino 20.9 1.5E+02 0.0032 26.1 3.8 35 133-167 136-173 (526)
65 COG0279 GmhA Phosphoheptose is 20.8 93 0.002 23.1 2.3 31 132-170 42-72 (176)
No 1
>KOG0158 consensus Cytochrome P450 CYP3/CYP5/CYP6/CYP9 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5.2e-55 Score=366.34 Aligned_cols=197 Identities=34% Similarity=0.553 Sum_probs=178.9
Q ss_pred cccccccchHHHHHHHHHHHHhChHHHHHHHHHHHHHhCCCCCCCccccCCChhHHHHHHhhcCCCCCCCCCCccccCCC
Q 036473 2 MLAGAMDTSPTVVEWALSELIKHPAVMKKLQRELENIVGLKRMVEESDLENLEYLDMVVKETLRLHPVAPLMAPHESMED 81 (204)
Q Consensus 2 ~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~~~~~~~~~~~~~~~l~~l~a~i~E~lRl~p~~~~~~~r~~~~~ 81 (204)
+++||+||||++|++++|+|++||++|+|||+||++++.....++++.+.+|+||++||+||||+||+++.. .|.+.+|
T Consensus 302 Fl~AGfeTts~tlsf~lYeLA~~PdvQ~kLreEI~~~~~~~~~ltyd~l~~L~YLd~Vi~ETLR~yP~~~~~-~R~C~k~ 380 (499)
T KOG0158|consen 302 FLLAGFETTASTLSFALYELAKNPDVQDKLREEIDEVLEEKEGLTYDSLSKLKYLDMVIKETLRLYPPAPFL-NRECTKD 380 (499)
T ss_pred HHHhhhHhHHHHHHHHHHHHhcChHHHHHHHHHHHHHhcccCCCCHHHHhCCcHHHHHHHHHHhhCCCcccc-cceecCc
Confidence 689999999999999999999999999999999999977665699999999999999999999999999995 8999999
Q ss_pred ceec-cEEeCCCCEEEEeehhhccCCCCCCCCCCCCCCccCCCCCCCCCCCCceeeccCCCCCCccHHHHHHHHHHHHHH
Q 036473 82 CTVN-GFHIPKKSRVIVNAWAIGRDPKAWNDPEKFFPERFVGSSVDVRGRDFQLLPFGSGRRACPGMQLALTVVKQVTAQ 160 (204)
Q Consensus 82 ~~~~-g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~pFg~G~r~C~G~~lA~~~~~~~la~ 160 (204)
+++. ++.|+||+.|.++.+++||||++|+||++|+||||.+++.+ ...+..|+|||.|||+|+|++||++|+|+.++.
T Consensus 381 ~~i~~~~~i~kG~~V~Ip~~alH~Dp~~~p~Pe~F~PERF~~~~~~-~~~~~~ylPFG~GPR~CIGmRfa~mq~K~~L~~ 459 (499)
T KOG0158|consen 381 YEIPGGFVIPKGTPVMIPTYALHHDPEYWPEPEKFKPERFEEENNK-SRHPGAYLPFGVGPRNCIGMRFALMEAKLALAH 459 (499)
T ss_pred eecCCCeEeCCCCEEEeecccccCCcccCCCcccCCCccCCCCccc-ccCCccccCCCCCccccHHHHHHHHHHHHHHHH
Confidence 9999 99999999999999999999999999999999999987654 446779999999999999999999999999999
Q ss_pred HhhhceeecCCCCCCCcCCcccccceeeecCCceeEEeeecC
Q 036473 161 LVHCFDWELPEGMLPTELDMTEEFGLVTYRAKHLLAVPSYRL 202 (204)
Q Consensus 161 ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 202 (204)
||++|+++..+...+ . ......+.++.|+.++.+++++|.
T Consensus 460 lL~~f~~~~~~~t~~-~-~~~~~~~~~l~pk~gi~Lkl~~r~ 499 (499)
T KOG0158|consen 460 LLRNFSFEVCPTTII-P-LEGDPKGFTLSPKGGIWLKLEPRD 499 (499)
T ss_pred HHhhCEEecCCcccC-c-ccCCccceeeecCCceEEEEEeCC
Confidence 999999998773222 2 222234788899999999999985
No 2
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.7e-53 Score=358.94 Aligned_cols=196 Identities=53% Similarity=0.934 Sum_probs=181.3
Q ss_pred CcccccccchHHHHHHHHHHHHhChHHHHHHHHHHHHHhCCCCCCCccccCCChhHHHHHHhhcCCCCCCCCCCccccCC
Q 036473 1 DMLAGAMDTSPTVVEWALSELIKHPAVMKKLQRELENIVGLKRMVEESDLENLEYLDMVVKETLRLHPVAPLMAPHESME 80 (204)
Q Consensus 1 d~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~~~~~~~~~~~~~~~l~~l~a~i~E~lRl~p~~~~~~~r~~~~ 80 (204)
|+++||+|||++++.|++.+|++||++|+|+++||+++++.+..++..|+.++|||+|+|+|++|+||++|+..+|.+.+
T Consensus 293 dl~~AGtdTta~Tl~Wa~a~Ll~~Pev~~K~qeEId~vvG~~r~v~e~D~~~lpYL~Avi~E~~Rl~p~~Pl~~ph~~~~ 372 (489)
T KOG0156|consen 293 DLFLAGTDTTATTLEWAMAELLNNPEVQKKLQEEIDEVVGKGRLVSESDLPKLPYLKAVIKETLRLHPPLPLLLPRETTE 372 (489)
T ss_pred HHHhcccchHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCChhhhccCHHHHHHHHHHHhcCCCccccccccccC
Confidence 68999999999999999999999999999999999999998887999999999999999999999999999999999999
Q ss_pred CceeccEEeCCCCEEEEeehhhccCCCCCCCCCCCCCCccCCCCCCCCCCCCceeeccCCCCCCccHHHHHHHHHHHHHH
Q 036473 81 DCTVNGFHIPKKSRVIVNAWAIGRDPKAWNDPEKFFPERFVGSSVDVRGRDFQLLPFGSGRRACPGMQLALTVVKQVTAQ 160 (204)
Q Consensus 81 ~~~~~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~pFg~G~r~C~G~~lA~~~~~~~la~ 160 (204)
|+.++||.|||||.|.++.|++||||++|+||++|+||||++++ +.+.....++|||.|+|+|||..+|++++.+++|.
T Consensus 373 d~~i~Gy~IPkgT~v~vn~~ai~rDp~vw~dP~eF~PERFl~~~-d~~~~~~~~iPFG~GRR~CpG~~La~~~l~l~la~ 451 (489)
T KOG0156|consen 373 DTKIGGYDIPKGTTVLVNLWAIHRDPKVWEDPEEFKPERFLDSN-DGKGLDFKLIPFGSGRRICPGEGLARAELFLFLAN 451 (489)
T ss_pred CeeEcCEEcCCCCEEEEeehhhhcCCccCCCccccChhhhcCCc-cccCCceEecCCCCCcCCCCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999975 22335678999999999999999999999999999
Q ss_pred HhhhceeecCCCCCCCcCCcccccceeeecCCceeEEeeecC
Q 036473 161 LVHCFDWELPEGMLPTELDMTEEFGLVTYRAKHLLAVPSYRL 202 (204)
Q Consensus 161 ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 202 (204)
|+++|||+++.+ .+|+.+. +++...+.++.+...+|.
T Consensus 452 llq~F~w~~~~~----~~d~~e~-~~~~~~~~pl~~~~~~r~ 488 (489)
T KOG0156|consen 452 LLQRFDWKLPGG----KVDMEEA-GLTLKKKKPLKAVPVPRL 488 (489)
T ss_pred HHheeeeecCCC----CCCCccc-ccceecCCcceeeeecCC
Confidence 999999998876 4566656 466777789998888875
No 3
>PLN03234 cytochrome P450 83B1; Provisional
Probab=100.00 E-value=1.4e-52 Score=359.18 Aligned_cols=202 Identities=44% Similarity=0.845 Sum_probs=182.2
Q ss_pred CcccccccchHHHHHHHHHHHHhChHHHHHHHHHHHHHhCCCCCCCccccCCChhHHHHHHhhcCCCCCCCCCCccccCC
Q 036473 1 DMLAGAMDTSPTVVEWALSELIKHPAVMKKLQRELENIVGLKRMVEESDLENLEYLDMVVKETLRLHPVAPLMAPHESME 80 (204)
Q Consensus 1 d~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~~~~~~~~~~~~~~~l~~l~a~i~E~lRl~p~~~~~~~r~~~~ 80 (204)
++++||+|||+++++|++++|++||++|+|+++|+++++++.+..+.+++++|||++|||+|+||++|+++...+|.+.+
T Consensus 295 ~ll~AG~dTTa~tl~~~l~~L~~~P~v~~kl~~Ei~~~~~~~~~~~~~~l~~l~yl~avi~E~lRl~p~~~~~~~R~~~~ 374 (499)
T PLN03234 295 DIVVPGTDTAAAVVVWAMTYLIKYPEAMKKAQDEVRNVIGDKGYVSEEDIPNLPYLKAVIKESLRLEPVIPILLHRETIA 374 (499)
T ss_pred HHHhcchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCCHHHHhcChHHHHHHHHHhccCCCccccCCcccCC
Confidence 47899999999999999999999999999999999999887667888999999999999999999999999876789989
Q ss_pred CceeccEEeCCCCEEEEeehhhccCCCCC-CCCCCCCCCccCCCCCC--CCCCCCceeeccCCCCCCccHHHHHHHHHHH
Q 036473 81 DCTVNGFHIPKKSRVIVNAWAIGRDPKAW-NDPEKFFPERFVGSSVD--VRGRDFQLLPFGSGRRACPGMQLALTVVKQV 157 (204)
Q Consensus 81 ~~~~~g~~ip~g~~v~~~~~~~~~d~~~~-~~p~~F~P~R~l~~~~~--~~~~~~~~~pFg~G~r~C~G~~lA~~~~~~~ 157 (204)
|++++|+.||+||.|.++.+.+||||++| +||++|+||||+++... ....+..|+|||.|+|+|+|+++|++|++++
T Consensus 375 d~~~~g~~IP~Gt~v~~~~~~~~rd~~~~~~~P~~F~PeR~l~~~~~~~~~~~~~~~~pFG~G~R~C~G~~~A~~e~~~~ 454 (499)
T PLN03234 375 DAKIGGYDIPAKTIIQVNAWAVSRDTAAWGDNPNEFIPERFMKEHKGVDFKGQDFELLPFGSGRRMCPAMHLGIAMVEIP 454 (499)
T ss_pred CeeECCEEECCCCEEEEehHhhhCCcccccCChhhcCchhhcCCCCCcCcCCCcceEeCCCCCCCCCCChHHHHHHHHHH
Confidence 99999999999999999999999999999 79999999999975432 1234668999999999999999999999999
Q ss_pred HHHHhhhceeecCCCCCCCcCCcccccceeeecCCceeEEeeecC
Q 036473 158 TAQLVHCFDWELPEGMLPTELDMTEEFGLVTYRAKHLLAVPSYRL 202 (204)
Q Consensus 158 la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 202 (204)
+|.|+++|+|+++++..+........+|++..++..+++.+++|.
T Consensus 455 la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (499)
T PLN03234 455 FANLLYKFDWSLPKGIKPEDIKMDVMTGLAMHKKEHLVLAPTKHI 499 (499)
T ss_pred HHHHHHheeeeCCCCCCCCCCCcccccccccccCCCeEEEeecCC
Confidence 999999999999887555555666678888889999999988873
No 4
>PLN02394 trans-cinnamate 4-monooxygenase
Probab=100.00 E-value=2.1e-52 Score=358.43 Aligned_cols=200 Identities=41% Similarity=0.781 Sum_probs=176.7
Q ss_pred CcccccccchHHHHHHHHHHHHhChHHHHHHHHHHHHHhCCCCCCCccccCCChhHHHHHHhhcCCCCCCCCCCccccCC
Q 036473 1 DMLAGAMDTSPTVVEWALSELIKHPAVMKKLQRELENIVGLKRMVEESDLENLEYLDMVVKETLRLHPVAPLMAPHESME 80 (204)
Q Consensus 1 d~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~~~~~~~~~~~~~~~l~~l~a~i~E~lRl~p~~~~~~~r~~~~ 80 (204)
++++||+||||++++|++++|++||++|+||++||+++.+.+..++.+++.+|||++|||+|+||++|+++...+|.+.+
T Consensus 300 ~~~~AG~dTTa~tl~~~l~~L~~~P~vq~kl~~Ei~~v~~~~~~~~~~~l~~lpyl~avi~EtlRl~p~~~~~~~r~~~~ 379 (503)
T PLN02394 300 NINVAAIETTLWSIEWGIAELVNHPEIQKKLRDELDTVLGPGNQVTEPDTHKLPYLQAVVKETLRLHMAIPLLVPHMNLE 379 (503)
T ss_pred HHHHhchhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhCCCCCCCHhHHhhCHHHHHHHHHHHhcCCCcccccceecCC
Confidence 35799999999999999999999999999999999999886666788889999999999999999999999987899999
Q ss_pred CceeccEEeCCCCEEEEeehhhccCCCCCCCCCCCCCCccCCCCCC--CCCCCCceeeccCCCCCCccHHHHHHHHHHHH
Q 036473 81 DCTVNGFHIPKKSRVIVNAWAIGRDPKAWNDPEKFFPERFVGSSVD--VRGRDFQLLPFGSGRRACPGMQLALTVVKQVT 158 (204)
Q Consensus 81 ~~~~~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~--~~~~~~~~~pFg~G~r~C~G~~lA~~~~~~~l 158 (204)
|.+++|+.||+||.|.++.+.+||||++|+||++|+||||++++.+ .......|+|||.|+|+|+|++||++|+++++
T Consensus 380 d~~i~g~~IP~Gt~V~~~~~~~~rd~~~~~~P~~F~PeRwl~~~~~~~~~~~~~~~~pFg~G~R~CiG~~~A~~e~~~~l 459 (503)
T PLN02394 380 DAKLGGYDIPAESKILVNAWWLANNPELWKNPEEFRPERFLEEEAKVEANGNDFRFLPFGVGRRSCPGIILALPILGIVL 459 (503)
T ss_pred CcccCCEEeCCCCEEEEchHHHhCCcccCCCccccCccccCCCCCcccccCCCCceeCCCCCCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999975432 12245679999999999999999999999999
Q ss_pred HHHhhhceeecCCCCCCCcCCcccccc-eeeecCCceeEEeeecC
Q 036473 159 AQLVHCFDWELPEGMLPTELDMTEEFG-LVTYRAKHLLAVPSYRL 202 (204)
Q Consensus 159 a~ll~~f~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~r~ 202 (204)
|.|+++|++++.+|. +..+..+.+| +.+..+.+..+++.+|+
T Consensus 460 a~ll~~f~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 502 (503)
T PLN02394 460 GRLVQNFELLPPPGQ--SKIDVSEKGGQFSLHIAKHSTVVFKPRS 502 (503)
T ss_pred HHHHHHceeEeCCCC--CcCccccccCceeeccCCCceEEeecCC
Confidence 999999999987763 1345555564 55545669999999997
No 5
>PLN02183 ferulate 5-hydroxylase
Probab=100.00 E-value=3.3e-52 Score=358.16 Aligned_cols=201 Identities=55% Similarity=1.043 Sum_probs=178.3
Q ss_pred CcccccccchHHHHHHHHHHHHhChHHHHHHHHHHHHHhCCCCCCCccccCCChhHHHHHHhhcCCCCCCCCCCccccCC
Q 036473 1 DMLAGAMDTSPTVVEWALSELIKHPAVMKKLQRELENIVGLKRMVEESDLENLEYLDMVVKETLRLHPVAPLMAPHESME 80 (204)
Q Consensus 1 d~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~~~~~~~~~~~~~~~l~~l~a~i~E~lRl~p~~~~~~~r~~~~ 80 (204)
++++||+|||+++++|++++|++||++|+|+++|++++++..+.++.+++++|||++|||+|+||++|+++.. .|.+.+
T Consensus 311 ~~~~AG~dTTa~tl~~~l~~La~~Pevq~kl~~Ei~~v~~~~~~~~~~~l~~L~yl~avi~EtlRl~p~~p~~-~r~~~~ 389 (516)
T PLN02183 311 DVMFGGTETVASAIEWAMAELMKSPEDLKRVQQELADVVGLNRRVEESDLEKLTYLKCTLKETLRLHPPIPLL-LHETAE 389 (516)
T ss_pred HHHHcchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHcCCCCCCCHHHhccChHHHHHHHHHhccCCCccce-eeeccC
Confidence 3689999999999999999999999999999999999987666678899999999999999999999999987 688999
Q ss_pred CceeccEEeCCCCEEEEeehhhccCCCCCCCCCCCCCCccCCCCCCC-CCCCCceeeccCCCCCCccHHHHHHHHHHHHH
Q 036473 81 DCTVNGFHIPKKSRVIVNAWAIGRDPKAWNDPEKFFPERFVGSSVDV-RGRDFQLLPFGSGRRACPGMQLALTVVKQVTA 159 (204)
Q Consensus 81 ~~~~~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~~-~~~~~~~~pFg~G~r~C~G~~lA~~~~~~~la 159 (204)
|++++|+.||||+.|.++.+++||||++|+||++|+||||++++... ....+.|+|||.|+|+|+|++||++|+++++|
T Consensus 390 d~~l~g~~IPkGt~V~~~~~~~hrd~~~~~dP~~F~PeRfl~~~~~~~~~~~~~~lpFG~G~R~CiG~~lA~~e~~l~la 469 (516)
T PLN02183 390 DAEVAGYFIPKRSRVMINAWAIGRDKNSWEDPDTFKPSRFLKPGVPDFKGSHFEFIPFGSGRRSCPGMQLGLYALDLAVA 469 (516)
T ss_pred ceeECCEEECCCCEEEEehhhhcCCccccCCccccCchhhCCCCCccccCCcceecCCCCCCCCCCChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999754321 23456899999999999999999999999999
Q ss_pred HHhhhceeecCCCCCCCcCCcccccceeeecCCceeEEeeecC
Q 036473 160 QLVHCFDWELPEGMLPTELDMTEEFGLVTYRAKHLLAVPSYRL 202 (204)
Q Consensus 160 ~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 202 (204)
.|+++|++++.++..+...+....++++..+..++.+.+++|.
T Consensus 470 ~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 512 (516)
T PLN02183 470 HLLHCFTWELPDGMKPSELDMNDVFGLTAPRATRLVAVPTYRL 512 (516)
T ss_pred HHHheeEEEcCCCCCCCCCChhhccccccccCCCcEEEeecCC
Confidence 9999999999877543345555566777656678899999885
No 6
>PLN02971 tryptophan N-hydroxylase
Probab=100.00 E-value=4.4e-52 Score=359.15 Aligned_cols=199 Identities=35% Similarity=0.733 Sum_probs=177.6
Q ss_pred CcccccccchHHHHHHHHHHHHhChHHHHHHHHHHHHHhCCCCCCCccccCCChhHHHHHHhhcCCCCCCCCCCccccCC
Q 036473 1 DMLAGAMDTSPTVVEWALSELIKHPAVMKKLQRELENIVGLKRMVEESDLENLEYLDMVVKETLRLHPVAPLMAPHESME 80 (204)
Q Consensus 1 d~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~~~~~~~~~~~~~~~l~~l~a~i~E~lRl~p~~~~~~~r~~~~ 80 (204)
++++||+|||+++++|++++|+.||++|+|+++||+++++.+..++.+++.+|||++|||+|+||++|+++...+|.+.+
T Consensus 334 ~l~~AG~dTTa~tl~~~l~~La~~Pevq~kl~~EI~~v~g~~~~~t~~d~~~LpYl~avi~E~lRl~p~~~~~~~r~~~~ 413 (543)
T PLN02971 334 ELVMAAPDNPSNAVEWAMAEMINKPEILHKAMEEIDRVVGKERFVQESDIPKLNYVKAIIREAFRLHPVAAFNLPHVALS 413 (543)
T ss_pred HHheeccchHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCCHHHhccCHHHHHHHHHHHhcCCCcccCcceecCC
Confidence 57899999999999999999999999999999999999987777899999999999999999999999999866899999
Q ss_pred CceeccEEeCCCCEEEEeehhhccCCCCCCCCCCCCCCccCCCCCCC--CCCCCceeeccCCCCCCccHHHHHHHHHHHH
Q 036473 81 DCTVNGFHIPKKSRVIVNAWAIGRDPKAWNDPEKFFPERFVGSSVDV--RGRDFQLLPFGSGRRACPGMQLALTVVKQVT 158 (204)
Q Consensus 81 ~~~~~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~~--~~~~~~~~pFg~G~r~C~G~~lA~~~~~~~l 158 (204)
|+.++||.||||+.|.++.|++||||++|+||++|+||||++++.+. ...+..|+|||.|+|.|+|++||++|+++++
T Consensus 414 d~~~~G~~IpkGt~v~~~~~~~~~d~~~~~dP~~F~PeRfl~~~~~~~~~~~~~~~~pFG~G~R~C~G~~lA~~e~~~~l 493 (543)
T PLN02971 414 DTTVAGYHIPKGSQVLLSRYGLGRNPKVWSDPLSFKPERHLNECSEVTLTENDLRFISFSTGKRGCAAPALGTAITTMML 493 (543)
T ss_pred CeeECCEEECCCCEEEECcHHhcCChhhCCCccccCcccCCCCCccccccCCCCccCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999754321 2245679999999999999999999999999
Q ss_pred HHHhhhceeecCCCCCCCcCCcccccceeeecCCceeEEeeecC
Q 036473 159 AQLVHCFDWELPEGMLPTELDMTEEFGLVTYRAKHLLAVPSYRL 202 (204)
Q Consensus 159 a~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 202 (204)
|.||++|+|++.++. ...++.+.++ .+..+.++.+.+++|.
T Consensus 494 a~ll~~f~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~ 534 (543)
T PLN02971 494 ARLLQGFKWKLAGSE--TRVELMESSH-DMFLSKPLVMVGELRL 534 (543)
T ss_pred HHHHHhCEEEeCCCC--CCcchhhhcC-cccccccceeeeeecC
Confidence 999999999987653 2466666666 5545568889988883
No 7
>KOG0157 consensus Cytochrome P450 CYP4/CYP19/CYP26 subfamilies [Secondary metabolites biosynthesis, transport and catabolism; Lipid transport and metabolism]
Probab=100.00 E-value=1.4e-51 Score=352.07 Aligned_cols=196 Identities=34% Similarity=0.600 Sum_probs=174.7
Q ss_pred cccccccchHHHHHHHHHHHHhChHHHHHHHHHHHHHhCCCCC-CCccccCCChhHHHHHHhhcCCCCCCCCCCccccCC
Q 036473 2 MLAGAMDTSPTVVEWALSELIKHPAVMKKLQRELENIVGLKRM-VEESDLENLEYLDMVVKETLRLHPVAPLMAPHESME 80 (204)
Q Consensus 2 ~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~~~~~~~-~~~~~~~~l~~l~a~i~E~lRl~p~~~~~~~r~~~~ 80 (204)
|+|||+||||++++|+++.|+.||++|+|+++|++++++.+.. ......++|+|+++||+|||||||++|.. .|.+.+
T Consensus 299 f~faG~DTTss~ltw~l~~La~hP~vq~k~~eEi~~i~~~~~~~~~~~~~~~m~yl~~vi~EsLRLyppvp~~-~R~~~~ 377 (497)
T KOG0157|consen 299 FMFAGHDTTSSALTWTLWLLAKHPEVQEKLREEVDEILGNRDDKWEVEKLDQMKYLEMVIKESLRLYPPVPLV-ARKATK 377 (497)
T ss_pred heeeccchHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCCCCChhhhhhhHHHHHHHHHHhccCCCCchh-hcccCC
Confidence 7899999999999999999999999999999999999875433 23333346999999999999999999998 899999
Q ss_pred Ccee-ccEEeCCCCEEEEeehhhccCCCCCC-CCCCCCCCccCCCCCCCCCCCCceeeccCCCCCCccHHHHHHHHHHHH
Q 036473 81 DCTV-NGFHIPKKSRVIVNAWAIGRDPKAWN-DPEKFFPERFVGSSVDVRGRDFQLLPFGSGRRACPGMQLALTVVKQVT 158 (204)
Q Consensus 81 ~~~~-~g~~ip~g~~v~~~~~~~~~d~~~~~-~p~~F~P~R~l~~~~~~~~~~~~~~pFg~G~r~C~G~~lA~~~~~~~l 158 (204)
|+.+ +|+.||||+.|.++++++|||+.+|+ ||++|+|+||+++......++++|+|||+|+|.|+|++||++|||+++
T Consensus 378 d~~l~~g~~IPkG~~V~i~~~~~~r~~~~~~~dp~~F~PeRf~~~~~~~~~~~~~fipFsaGpR~CiG~~fA~lemKv~l 457 (497)
T KOG0157|consen 378 DVKLPGGYTIPKGTNVLISIYALHRDPRVWGEDPEEFDPERFLDGEEKAKRHPFAFIPFSAGPRNCIGQKFAMLEMKVVL 457 (497)
T ss_pred CeEcCCCcEeCCCCEEEEehHHhccCccccCCChhhcCccccCCCCCcCCCCCccccCCCCCcccchhHHHHHHHHHHHH
Confidence 9999 58999999999999999999999997 999999999997654434557899999999999999999999999999
Q ss_pred HHHhhhceeecCCCCCCCcCCcccccceeeecCCceeEEeeecCC
Q 036473 159 AQLVHCFDWELPEGMLPTELDMTEEFGLVTYRAKHLLAVPSYRLS 203 (204)
Q Consensus 159 a~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 203 (204)
+.|+++|+|++..+. . ......++++++.++.+++++|..
T Consensus 458 ~~ll~~f~~~~~~~~---~--~~~~~~~~l~~~~gl~v~~~~r~~ 497 (497)
T KOG0157|consen 458 AHLLRRFRIEPVGGD---K--PKPVPELTLRPKNGLKVKLRPRGS 497 (497)
T ss_pred HHHHHheEEEecCCC---C--ceeeeEEEEEecCCeEEEEEeCCC
Confidence 999999999987762 1 445678899999999999999963
No 8
>PLN02966 cytochrome P450 83A1
Probab=100.00 E-value=2.3e-51 Score=351.88 Aligned_cols=200 Identities=41% Similarity=0.809 Sum_probs=175.1
Q ss_pred CcccccccchHHHHHHHHHHHHhChHHHHHHHHHHHHHhCCC--CCCCccccCCChhHHHHHHhhcCCCCCCCCCCcccc
Q 036473 1 DMLAGAMDTSPTVVEWALSELIKHPAVMKKLQRELENIVGLK--RMVEESDLENLEYLDMVVKETLRLHPVAPLMAPHES 78 (204)
Q Consensus 1 d~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~~~~~--~~~~~~~~~~l~~l~a~i~E~lRl~p~~~~~~~r~~ 78 (204)
++++||+|||+++++|++++|++||++|+|+++||+++++.+ ..++.+++++|||++|||+|+||++|+++...+|.+
T Consensus 296 ~l~~AG~eTta~~l~~~l~~L~~~P~~q~kl~~Ei~~v~~~~~~~~~~~~dl~~lpyl~avi~E~LRl~p~v~~~~~R~~ 375 (502)
T PLN02966 296 DIVVAGTDTAAAAVVWGMTYLMKYPQVLKKAQAEVREYMKEKGSTFVTEDDVKNLPYFRALVKETLRIEPVIPLLIPRAC 375 (502)
T ss_pred HHHhccccchHHHHHHHHHHHHhCHHHHHHHHHHHHHHhcccCCCcCCHhhccCCcHHHHHHHHHhccCCCcccccCccc
Confidence 468999999999999999999999999999999999998643 346888999999999999999999999998668999
Q ss_pred CCCceeccEEeCCCCEEEEeehhhccCCCCC-CCCCCCCCCccCCCCCCCCCCCCceeeccCCCCCCccHHHHHHHHHHH
Q 036473 79 MEDCTVNGFHIPKKSRVIVNAWAIGRDPKAW-NDPEKFFPERFVGSSVDVRGRDFQLLPFGSGRRACPGMQLALTVVKQV 157 (204)
Q Consensus 79 ~~~~~~~g~~ip~g~~v~~~~~~~~~d~~~~-~~p~~F~P~R~l~~~~~~~~~~~~~~pFg~G~r~C~G~~lA~~~~~~~ 157 (204)
.+|++++|+.||+||.|.++.+.+||||++| +||++|+||||++++.+....+..|+|||.|+|+|+|++||++|++++
T Consensus 376 ~~d~~l~g~~IP~Gt~V~~~~~~~~rdp~~~g~dP~~F~PeRwl~~~~~~~~~~~~~~pFg~G~R~C~G~~~A~~el~~~ 455 (502)
T PLN02966 376 IQDTKIAGYDIPAGTTVNVNAWAVSRDEKEWGPNPDEFRPERFLEKEVDFKGTDYEFIPFGSGRRMCPGMRLGAAMLEVP 455 (502)
T ss_pred CCCeeEccEEECCCCEEEEecccccCCcccccCChhhCChhhhcCCCCCcCCCcCCccCCCCCCCCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999 999999999999754332234568999999999999999999999999
Q ss_pred HHHHhhhceeecCCCCCCCcCCcccccceeeecCCceeEEeee
Q 036473 158 TAQLVHCFDWELPEGMLPTELDMTEEFGLVTYRAKHLLAVPSY 200 (204)
Q Consensus 158 la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (204)
+|.||++|+|++.++..+..++....+|++..++.++.+..++
T Consensus 456 la~ll~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (502)
T PLN02966 456 YANLLLNFNFKLPNGMKPDDINMDVMTGLAMHKSQHLKLVPEK 498 (502)
T ss_pred HHHHHHhceeeCCCCCCcccCCcccccCeeeccCCCeEEEEEe
Confidence 9999999999998875555566666677776555566655544
No 9
>PTZ00404 cytochrome P450; Provisional
Probab=100.00 E-value=2e-51 Score=350.71 Aligned_cols=191 Identities=29% Similarity=0.539 Sum_probs=170.7
Q ss_pred cccccccchHHHHHHHHHHHHhChHHHHHHHHHHHHHhCCCCCCCccccCCChhHHHHHHhhcCCCCCCCCCCccccCCC
Q 036473 2 MLAGAMDTSPTVVEWALSELIKHPAVMKKLQRELENIVGLKRMVEESDLENLEYLDMVVKETLRLHPVAPLMAPHESMED 81 (204)
Q Consensus 2 ~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~~~~~~~~~~~~~~~l~~l~a~i~E~lRl~p~~~~~~~r~~~~~ 81 (204)
+++||+|||+++++|++++|++||++|+||++|++++++....++.+++.+|||++|||+|+||++|+++...+|.+.+|
T Consensus 291 ~~~AG~dTta~~l~~~l~~L~~~P~vq~kl~~Ei~~v~~~~~~~~~~~l~~L~yl~avi~EtlRl~p~~~~~~~R~~~~d 370 (482)
T PTZ00404 291 FFLAGVDTSATSLEWMVLMLCNYPEIQEKAYNEIKSTVNGRNKVLLSDRQSTPYTVAIIKETLRYKPVSPFGLPRSTSND 370 (482)
T ss_pred HHHhccchHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhcCCCCCCccccccChHHHHHHHHHHHhcCCcccccceeccCC
Confidence 68999999999999999999999999999999999998876667889999999999999999999999997568999999
Q ss_pred cee-ccEEeCCCCEEEEeehhhccCCCCCCCCCCCCCCccCCCCCCCCCCCCceeeccCCCCCCccHHHHHHHHHHHHHH
Q 036473 82 CTV-NGFHIPKKSRVIVNAWAIGRDPKAWNDPEKFFPERFVGSSVDVRGRDFQLLPFGSGRRACPGMQLALTVVKQVTAQ 160 (204)
Q Consensus 82 ~~~-~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~pFg~G~r~C~G~~lA~~~~~~~la~ 160 (204)
+++ +|+.||+|+.|.++.+++||||++|+||++|+||||++.. .+..|+|||.|+|+|+|++||++|++++++.
T Consensus 371 ~~l~~g~~Ip~Gt~V~~~~~a~hrdp~~~~dP~~F~PeRwl~~~-----~~~~~~pFg~G~R~C~G~~~A~~e~~~~la~ 445 (482)
T PTZ00404 371 IIIGGGHFIPKDAQILINYYSLGRNEKYFENPEQFDPSRFLNPD-----SNDAFMPFSIGPRNCVGQQFAQDELYLAFSN 445 (482)
T ss_pred EEecCCeEECCCCEEEeeHHHhhCCccccCCccccCccccCCCC-----CCCceeccCCCCCCCccHHHHHHHHHHHHHH
Confidence 999 9999999999999999999999999999999999998642 3568999999999999999999999999999
Q ss_pred HhhhceeecCCCCCCCcCCcccccceeeecCCceeEEeeec
Q 036473 161 LVHCFDWELPEGMLPTELDMTEEFGLVTYRAKHLLAVPSYR 201 (204)
Q Consensus 161 ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 201 (204)
|+++|+|++.++. +.......++++. +.++.+.+++|
T Consensus 446 ll~~f~~~~~~~~---~~~~~~~~~~~~~-~~~~~v~~~~R 482 (482)
T PTZ00404 446 IILNFKLKSIDGK---KIDETEEYGLTLK-PNKFKVLLEKR 482 (482)
T ss_pred HHHhcEEecCCCC---CCCcccccceeec-CCCceeeeecC
Confidence 9999999987652 2222234466666 55788888877
No 10
>PLN00168 Cytochrome P450; Provisional
Probab=100.00 E-value=4.8e-51 Score=351.15 Aligned_cols=200 Identities=36% Similarity=0.641 Sum_probs=176.2
Q ss_pred cccccccchHHHHHHHHHHHHhChHHHHHHHHHHHHHhCCC-CCCCccccCCChhHHHHHHhhcCCCCCCCCCCccccCC
Q 036473 2 MLAGAMDTSPTVVEWALSELIKHPAVMKKLQRELENIVGLK-RMVEESDLENLEYLDMVVKETLRLHPVAPLMAPHESME 80 (204)
Q Consensus 2 ~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~~~~~-~~~~~~~~~~l~~l~a~i~E~lRl~p~~~~~~~r~~~~ 80 (204)
+++||+|||+++++|++++|++||++|+|+++||+++++.. +.++.+++.+|||++|||+|+||++|+++...+|.+.+
T Consensus 314 l~~AG~dTTa~~l~~~l~~L~~~P~~q~kl~~Ei~~v~~~~~~~~~~~~~~~lpyl~avi~EtlRl~p~~~~~~~R~~~~ 393 (519)
T PLN00168 314 FLNAGTDTTSTALQWIMAELVKNPSIQSKLHDEIKAKTGDDQEEVSEEDVHKMPYLKAVVLEGLRKHPPAHFVLPHKAAE 393 (519)
T ss_pred HHHhcchHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCCCHHHhhCChHHHHHHHHHhhcCCCCcccCCccCCC
Confidence 68999999999999999999999999999999999998753 56788899999999999999999999998877899999
Q ss_pred CceeccEEeCCCCEEEEeehhhccCCCCCCCCCCCCCCccCCCCCC-----CCCCCCceeeccCCCCCCccHHHHHHHHH
Q 036473 81 DCTVNGFHIPKKSRVIVNAWAIGRDPKAWNDPEKFFPERFVGSSVD-----VRGRDFQLLPFGSGRRACPGMQLALTVVK 155 (204)
Q Consensus 81 ~~~~~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~-----~~~~~~~~~pFg~G~r~C~G~~lA~~~~~ 155 (204)
|++++|+.||||+.|.++.+++||||++|+||++|+||||++.... .......|+|||.|+|+|+|++||++|++
T Consensus 394 d~~~~g~~IpkGt~v~~~~~~~~~d~~~~~~p~~F~PeRf~~~~~~~~~~~~~~~~~~~~pFG~G~R~C~G~~lA~~e~~ 473 (519)
T PLN00168 394 DMEVGGYLIPKGATVNFMVAEMGRDEREWERPMEFVPERFLAGGDGEGVDVTGSREIRMMPFGVGRRICAGLGIAMLHLE 473 (519)
T ss_pred CccCCCEEECCCCEEEEChHHHhcCccccCCccccCcccCCCCCCCccccccccCCcceeCCCCCCCCCCcHHHHHHHHH
Confidence 9999999999999999999999999999999999999999974321 11234579999999999999999999999
Q ss_pred HHHHHHhhhceeecCCCCCCCcCCcccccceeeecCCceeEEeeecCCC
Q 036473 156 QVTAQLVHCFDWELPEGMLPTELDMTEEFGLVTYRAKHLLAVPSYRLST 204 (204)
Q Consensus 156 ~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 204 (204)
++++.|+++|+|++.++. ..+.....++++.++.++.+++++|+.|
T Consensus 474 ~~la~ll~~f~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~R~~~ 519 (519)
T PLN00168 474 YFVANMVREFEWKEVPGD---EVDFAEKREFTTVMAKPLRARLVPRRTT 519 (519)
T ss_pred HHHHHHHHHccceeCCCC---cCChhhhceeEEeecCCcEEEEEeccCC
Confidence 999999999999987652 2333333456667778899999999865
No 11
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional
Probab=100.00 E-value=7.1e-51 Score=348.84 Aligned_cols=200 Identities=45% Similarity=0.907 Sum_probs=178.1
Q ss_pred CcccccccchHHHHHHHHHHHHhChHHHHHHHHHHHHHhCCCCCCCccccCCChhHHHHHHhhcCCCCCCCCCCccccCC
Q 036473 1 DMLAGAMDTSPTVVEWALSELIKHPAVMKKLQRELENIVGLKRMVEESDLENLEYLDMVVKETLRLHPVAPLMAPHESME 80 (204)
Q Consensus 1 d~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~~~~~~~~~~~~~~~l~~l~a~i~E~lRl~p~~~~~~~r~~~~ 80 (204)
++++||+|||+++++|++++|++||++|+|+++|++++++....++.+++++|||++|||+|+||++|+++...+|.+.+
T Consensus 296 ~~~~Ag~dTta~~l~~~l~~L~~~P~~~~kl~~Ei~~~~~~~~~~~~~~~~~lpyl~avi~EtlRl~p~~~~~~~R~~~~ 375 (504)
T PLN00110 296 NLFTAGTDTSSSVIEWSLAEMLKNPSILKRAHEEMDQVIGRNRRLVESDLPKLPYLQAICKESFRKHPSTPLNLPRVSTQ 375 (504)
T ss_pred hhhcccccchHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCCHHHhhcChHHHHHHHHHhcCCCCcccccccccCC
Confidence 47899999999999999999999999999999999999887667888999999999999999999999999866899999
Q ss_pred CceeccEEeCCCCEEEEeehhhccCCCCCCCCCCCCCCccCCCCCCCC---CCCCceeeccCCCCCCccHHHHHHHHHHH
Q 036473 81 DCTVNGFHIPKKSRVIVNAWAIGRDPKAWNDPEKFFPERFVGSSVDVR---GRDFQLLPFGSGRRACPGMQLALTVVKQV 157 (204)
Q Consensus 81 ~~~~~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~~~---~~~~~~~pFg~G~r~C~G~~lA~~~~~~~ 157 (204)
|++++|+.||+|+.|.++.+++|+||++|+||++|+||||++++.... .....|+|||.|+|.|+|++||++|++++
T Consensus 376 d~~~~g~~Ip~Gt~V~~~~~~~h~d~~~~~dP~~F~PeRfl~~~~~~~~~~~~~~~~~pFG~G~R~C~G~~~A~~e~~~~ 455 (504)
T PLN00110 376 ACEVNGYYIPKNTRLSVNIWAIGRDPDVWENPEEFRPERFLSEKNAKIDPRGNDFELIPFGAGRRICAGTRMGIVLVEYI 455 (504)
T ss_pred CeeeCCEEECCCCEEEEeHHHhcCChhhcCCcccCCcccccCCCCcccccCCCeeeEeCCCCCCCCCCcHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999996532211 12357999999999999999999999999
Q ss_pred HHHHhhhceeecCCCCCCCcCCcccccceeeecCCceeEEeeecCC
Q 036473 158 TAQLVHCFDWELPEGMLPTELDMTEEFGLVTYRAKHLLAVPSYRLS 203 (204)
Q Consensus 158 la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 203 (204)
++.|+++|+|++.++. +.+....+++++.|+.++.+.+++|..
T Consensus 456 la~ll~~f~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~r~~ 498 (504)
T PLN00110 456 LGTLVHSFDWKLPDGV---ELNMDEAFGLALQKAVPLSAMVTPRLH 498 (504)
T ss_pred HHHHHHhceeecCCCC---ccCcccccccccccCCCceEeeccCCC
Confidence 9999999999987762 334334567788889999999999853
No 12
>PLN03112 cytochrome P450 family protein; Provisional
Probab=100.00 E-value=1.1e-50 Score=348.50 Aligned_cols=203 Identities=47% Similarity=0.889 Sum_probs=179.9
Q ss_pred CcccccccchHHHHHHHHHHHHhChHHHHHHHHHHHHHhCCCCCCCccccCCChhHHHHHHhhcCCCCCCCCCCccccCC
Q 036473 1 DMLAGAMDTSPTVVEWALSELIKHPAVMKKLQRELENIVGLKRMVEESDLENLEYLDMVVKETLRLHPVAPLMAPHESME 80 (204)
Q Consensus 1 d~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~~~~~~~~~~~~~~~l~~l~a~i~E~lRl~p~~~~~~~r~~~~ 80 (204)
++++||+|||+++++|++++|++||++|+||++||+++++..+.++.+++++|||++|||+|++|++|+++...+|.+.+
T Consensus 303 ~~~~AG~dTTa~~l~~~l~~L~~~P~vq~kl~~Ei~~~~~~~~~~t~~~l~~L~yl~avi~EtlRl~p~~~~~~~R~~~~ 382 (514)
T PLN03112 303 DMIAAATDTSAVTNEWAMAEVIKNPRVLRKIQEELDSVVGRNRMVQESDLVHLNYLRCVVRETFRMHPAGPFLIPHESLR 382 (514)
T ss_pred HHhccccccHHHHHHHHHHHHHhChHHHHHHHHHHHHhcCCCCcCChhhhccCcHHHHHHHHHhccCCCcccccccccCC
Confidence 47899999999999999999999999999999999999887667889999999999999999999999999866899999
Q ss_pred CceeccEEeCCCCEEEEeehhhccCCCCCCCCCCCCCCccCCCCCC--C--CCCCCceeeccCCCCCCccHHHHHHHHHH
Q 036473 81 DCTVNGFHIPKKSRVIVNAWAIGRDPKAWNDPEKFFPERFVGSSVD--V--RGRDFQLLPFGSGRRACPGMQLALTVVKQ 156 (204)
Q Consensus 81 ~~~~~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~--~--~~~~~~~~pFg~G~r~C~G~~lA~~~~~~ 156 (204)
|+.++|+.||||+.|.++.+.+||||++|+||++|+||||+.+... . ...+..|+|||.|+|+|+|++||++|+++
T Consensus 383 d~~i~g~~IPkGt~v~~~~~~~h~d~~~~~dP~~F~PeRf~~~~~~~~~~~~~~~~~~~pFg~G~R~C~G~~~A~~e~~~ 462 (514)
T PLN03112 383 ATTINGYYIPAKTRVFINTHGLGRNTKIWDDVEEFRPERHWPAEGSRVEISHGPDFKILPFSAGKRKCPGAPLGVTMVLM 462 (514)
T ss_pred CeeEcCEEeCCCCEEEEehHHhhCCcccCCChhhcCCcccCCCCCCccccccCCCcceeCCCCCCCCCCcHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998754211 1 12345799999999999999999999999
Q ss_pred HHHHHhhhceeecCCCCCCCcCCcccccceeeecCCceeEEeeecCC
Q 036473 157 VTAQLVHCFDWELPEGMLPTELDMTEEFGLVTYRAKHLLAVPSYRLS 203 (204)
Q Consensus 157 ~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 203 (204)
+++.|+++|+|++.++..++.++....+++..++++++.+.+.||+.
T Consensus 463 ~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 509 (514)
T PLN03112 463 ALARLFHCFDWSPPDGLRPEDIDTQEVYGMTMPKAKPLRAVATPRLA 509 (514)
T ss_pred HHHHHHHheeeecCCCCCcccCCCccccCcccccCCCeEEEeecCCc
Confidence 99999999999987664333455555667777788899999999975
No 13
>PLN02687 flavonoid 3'-monooxygenase
Probab=100.00 E-value=1.3e-50 Score=348.27 Aligned_cols=201 Identities=49% Similarity=0.954 Sum_probs=178.7
Q ss_pred cccccccchHHHHHHHHHHHHhChHHHHHHHHHHHHHhCCCCCCCccccCCChhHHHHHHhhcCCCCCCCCCCccccCCC
Q 036473 2 MLAGAMDTSPTVVEWALSELIKHPAVMKKLQRELENIVGLKRMVEESDLENLEYLDMVVKETLRLHPVAPLMAPHESMED 81 (204)
Q Consensus 2 ~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~~~~~~~~~~~~~~~l~~l~a~i~E~lRl~p~~~~~~~r~~~~~ 81 (204)
+++||+|||+++++|++++|++||++|+|+++|++++++..+.++.+++.+|||++|||+|+||++|+++...+|.+.+|
T Consensus 305 ~~~AG~eTta~~l~~~l~~L~~~P~~~~kl~~Ei~~~~~~~~~~~~~~l~~lpyl~a~i~EtlRl~p~~~~~~~R~~~~d 384 (517)
T PLN02687 305 LFTAGTDTTSSTVEWAIAELIRHPDILKKAQEELDAVVGRDRLVSESDLPQLTYLQAVIKETFRLHPSTPLSLPRMAAEE 384 (517)
T ss_pred HhccccCchHHHHHHHHHHHHhCHHHHHHHHHHHHHHcCCCCCCCHHHhhhCHHHHHHHHHHHccCCCccccccccCCCC
Confidence 68999999999999999999999999999999999998776678889999999999999999999999998668999999
Q ss_pred ceeccEEeCCCCEEEEeehhhccCCCCCCCCCCCCCCccCCCCCCC----CCCCCceeeccCCCCCCccHHHHHHHHHHH
Q 036473 82 CTVNGFHIPKKSRVIVNAWAIGRDPKAWNDPEKFFPERFVGSSVDV----RGRDFQLLPFGSGRRACPGMQLALTVVKQV 157 (204)
Q Consensus 82 ~~~~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~~----~~~~~~~~pFg~G~r~C~G~~lA~~~~~~~ 157 (204)
++++|+.||+|+.|.++.+.+||||++|+||++|+||||++++... ...+..|+|||.|+|.|+|++||++|++++
T Consensus 385 ~~~~g~~ip~Gt~v~~~~~~~h~d~~~~~dp~~F~PeRfl~~~~~~~~~~~~~~~~~~pFG~G~r~C~G~~~A~~e~~~~ 464 (517)
T PLN02687 385 CEINGYHIPKGATLLVNVWAIARDPEQWPDPLEFRPDRFLPGGEHAGVDVKGSDFELIPFGAGRRICAGLSWGLRMVTLL 464 (517)
T ss_pred eeECCEEECCCCEEEEecHHhcCCcccCCCcccCCchhcCCCCCccccccCCCceeeCCCCCCCCCCCChHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999753211 123557999999999999999999999999
Q ss_pred HHHHhhhceeecCCCCCCCcCCcccccceeeecCCceeEEeeecC
Q 036473 158 TAQLVHCFDWELPEGMLPTELDMTEEFGLVTYRAKHLLAVPSYRL 202 (204)
Q Consensus 158 la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 202 (204)
++.|+++|++++.++..+...+....+++.+.+..++.+++++|+
T Consensus 465 la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~ 509 (517)
T PLN02687 465 TATLVHAFDWELADGQTPDKLNMEEAYGLTLQRAVPLMVHPRPRL 509 (517)
T ss_pred HHHHHHhcceecCCCCCcccCCcccccceeeecCCCeEEeeccCC
Confidence 999999999999876443344444456677777789999999985
No 14
>PLN02169 fatty acid (omega-1)-hydroxylase/midchain alkane hydroxylase
Probab=100.00 E-value=5.8e-51 Score=349.00 Aligned_cols=191 Identities=26% Similarity=0.524 Sum_probs=165.5
Q ss_pred CcccccccchHHHHHHHHHHHHhChHHHHHHHHHHHHHhCCCCCCCccccCCChhHHHHHHhhcCCCCCCCCCCccccCC
Q 036473 1 DMLAGAMDTSPTVVEWALSELIKHPAVMKKLQRELENIVGLKRMVEESDLENLEYLDMVVKETLRLHPVAPLMAPHESME 80 (204)
Q Consensus 1 d~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~~~~~~~~~~~~~~~l~~l~a~i~E~lRl~p~~~~~~~r~~~~ 80 (204)
++++||+|||+++++|++++|+.||++|+|+++||++++ +.+++.+|||++|||+|+||++|+++...++.+.+
T Consensus 308 ~~l~AG~dTTa~tl~w~l~~La~~Pevq~kl~~Ei~~v~------~~~dl~~L~Yl~avi~EtLRl~P~vp~~~r~~~~d 381 (500)
T PLN02169 308 SLVLAGRDTTSSALTWFFWLLSKHPQVMAKIRHEINTKF------DNEDLEKLVYLHAALSESMRLYPPLPFNHKAPAKP 381 (500)
T ss_pred HHHHhchhHHHHHHHHHHHHHHCCHHHHHHHHHHHHhhC------CHHHHhcCHHHHHHHHHHHhcCCCCCcCceecCCC
Confidence 368999999999999999999999999999999999874 56789999999999999999999999884444444
Q ss_pred CceeccEEeCCCCEEEEeehhhccCCCCC-CCCCCCCCCccCCCCCCCC-CCCCceeeccCCCCCCccHHHHHHHHHHHH
Q 036473 81 DCTVNGFHIPKKSRVIVNAWAIGRDPKAW-NDPEKFFPERFVGSSVDVR-GRDFQLLPFGSGRRACPGMQLALTVVKQVT 158 (204)
Q Consensus 81 ~~~~~g~~ip~g~~v~~~~~~~~~d~~~~-~~p~~F~P~R~l~~~~~~~-~~~~~~~pFg~G~r~C~G~~lA~~~~~~~l 158 (204)
++.++|+.||||+.|.++.|++||||++| +||++|+||||++++.+.. ..++.|+|||+|+|+|+|++||++|+++++
T Consensus 382 ~~~~~G~~IpkGt~v~i~~~~ihrd~~~w~~dP~~F~PeRfl~~~~~~~~~~~~~~lPFG~GpR~CiG~~~A~~e~k~~l 461 (500)
T PLN02169 382 DVLPSGHKVDAESKIVICIYALGRMRSVWGEDALDFKPERWISDNGGLRHEPSYKFMAFNSGPRTCLGKHLALLQMKIVA 461 (500)
T ss_pred CCccCCEEECCCCEEEEcHHHhhCCccccCCChhhcCccccCCCCCCccCCCCccccCCCCCCCCCcCHHHHHHHHHHHH
Confidence 45559999999999999999999999999 8999999999997643322 236789999999999999999999999999
Q ss_pred HHHhhhceeecCCCCCCCcCCcccccceeeecCCceeEEeeecC
Q 036473 159 AQLVHCFDWELPEGMLPTELDMTEEFGLVTYRAKHLLAVPSYRL 202 (204)
Q Consensus 159 a~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 202 (204)
+.|+++|+|++.++. .. ....++++.|+.++.+++++|.
T Consensus 462 a~ll~~f~~~~~~~~---~~--~~~~~~~l~~~~gl~l~l~~~~ 500 (500)
T PLN02169 462 LEIIKNYDFKVIEGH---KI--EAIPSILLRMKHGLKVTVTKKI 500 (500)
T ss_pred HHHHHHCEEEEcCCC---Cc--ccccceEEecCCCEEEEEEeCC
Confidence 999999999987542 22 2344577889999999999883
No 15
>KOG0159 consensus Cytochrome P450 CYP11/CYP12/CYP24/CYP27 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.8e-51 Score=338.10 Aligned_cols=196 Identities=30% Similarity=0.516 Sum_probs=180.8
Q ss_pred CcccccccchHHHHHHHHHHHHhChHHHHHHHHHHHHHhCC-CCCCCccccCCChhHHHHHHhhcCCCCCCCCCCccccC
Q 036473 1 DMLAGAMDTSPTVVEWALSELIKHPAVMKKLQRELENIVGL-KRMVEESDLENLEYLDMVVKETLRLHPVAPLMAPHESM 79 (204)
Q Consensus 1 d~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~~~~-~~~~~~~~~~~l~~l~a~i~E~lRl~p~~~~~~~r~~~ 79 (204)
||++||.||||+++.|+||+|++||++|++|++|+.+++.. ++..+.+++.++|||+|||||++|+||.++.. .|+..
T Consensus 323 dll~aGvDTTs~tl~~~Ly~LarnP~~Q~~L~~Ei~~~~p~~~~~~~~~~l~~~pyLrAcIKEtlRlyPv~~~~-~R~l~ 401 (519)
T KOG0159|consen 323 DLLAAGVDTTSNTLLWALYELARNPEVQQRLREEILAVLPSGNSELTQKALTNMPYLRACIKETLRLYPVVPGN-GRVLP 401 (519)
T ss_pred HHHHHhccchHHHHHHHHHHHhcChHHHHHHHHHHHhhCCCcccccchHHHhhCHHHHHHHHhhhceecccccc-ccccc
Confidence 68999999999999999999999999999999999999887 57788999999999999999999999999998 79999
Q ss_pred CCceeccEEeCCCCEEEEeehhhccCCCCCCCCCCCCCCccCCCCCCCCCCCCceeeccCCCCCCccHHHHHHHHHHHHH
Q 036473 80 EDCTVNGFHIPKKSRVIVNAWAIGRDPKAWNDPEKFFPERFVGSSVDVRGRDFQLLPFGSGRRACPGMQLALTVVKQVTA 159 (204)
Q Consensus 80 ~~~~~~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~pFg~G~r~C~G~~lA~~~~~~~la 159 (204)
+|..++||.|||||.|.+..+.+.+||++|++|++|+||||++++. ...+++.++|||.|+|+|+|++||.+|+.+++|
T Consensus 402 ~D~vL~gY~vPagT~V~l~~~~~~r~~~~F~~p~~F~PeRWL~~~~-~~~~pF~~LPFGfG~R~C~GRRiAElEl~llLa 480 (519)
T KOG0159|consen 402 KDLVLSGYHVPAGTLVVLFLYVLGRNPAYFPDPEEFLPERWLKPST-KTIHPFASLPFGFGPRMCLGRRIAELELHLLLA 480 (519)
T ss_pred hhceeccceecCCCeEEEeehhhccChhhCCCccccChhhhccccc-CCCCCceecCCCCCccccchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998764 455788999999999999999999999999999
Q ss_pred HHhhhceeecCCCCCCCcCCcccccceeeecCCceeEEeeecCC
Q 036473 160 QLVHCFDWELPEGMLPTELDMTEEFGLVTYRAKHLLAVPSYRLS 203 (204)
Q Consensus 160 ~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 203 (204)
.++++|+++..++ .++ ...+.+++.|..++.+.+++|++
T Consensus 481 rllr~f~V~~~~~---~pv--~~~~~~il~P~~~l~f~f~~r~~ 519 (519)
T KOG0159|consen 481 RLLRNFKVEFLHE---EPV--EYVYRFILVPNRPLRFKFRPRNE 519 (519)
T ss_pred HHHHhcceeecCC---CCc--cceeEEEEcCCCCcceeeeeCCC
Confidence 9999999998764 233 33567788899999999999974
No 16
>PLN02426 cytochrome P450, family 94, subfamily C protein
Probab=100.00 E-value=3.3e-50 Score=344.29 Aligned_cols=199 Identities=26% Similarity=0.381 Sum_probs=172.6
Q ss_pred cccccccchHHHHHHHHHHHHhChHHHHHHHHHHHHHhCCC-CCCCccccCCChhHHHHHHhhcCCCCCCCCCCccccCC
Q 036473 2 MLAGAMDTSPTVVEWALSELIKHPAVMKKLQRELENIVGLK-RMVEESDLENLEYLDMVVKETLRLHPVAPLMAPHESME 80 (204)
Q Consensus 2 ~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~~~~~-~~~~~~~~~~l~~l~a~i~E~lRl~p~~~~~~~r~~~~ 80 (204)
+++||+|||+++++|++++|++||++|+||++|++++.+.+ ..++.+++++||||+|||+|+||++|+++.. .|.+.+
T Consensus 301 ~l~AG~dTta~~l~~~l~~L~~~P~v~~kl~~Ei~~~~~~~~~~~t~~~l~~LpYl~avi~EtLRl~p~v~~~-~r~~~~ 379 (502)
T PLN02426 301 FLLAGRDTVASALTSFFWLLSKHPEVASAIREEADRVMGPNQEAASFEEMKEMHYLHAALYESMRLFPPVQFD-SKFAAE 379 (502)
T ss_pred HHHhccchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCCCCHHHHhcChHHHHHHHHHHhCCCCCCCc-ceeecc
Confidence 68999999999999999999999999999999999987653 3578899999999999999999999999987 588888
Q ss_pred Ccee-ccEEeCCCCEEEEeehhhccCCCCC-CCCCCCCCCccCCCCCCCCCCCCceeeccCCCCCCccHHHHHHHHHHHH
Q 036473 81 DCTV-NGFHIPKKSRVIVNAWAIGRDPKAW-NDPEKFFPERFVGSSVDVRGRDFQLLPFGSGRRACPGMQLALTVVKQVT 158 (204)
Q Consensus 81 ~~~~-~g~~ip~g~~v~~~~~~~~~d~~~~-~~p~~F~P~R~l~~~~~~~~~~~~~~pFg~G~r~C~G~~lA~~~~~~~l 158 (204)
|.++ +|+.||+|+.|.++.+++||||++| +||++|+||||+++.......+..++|||.|+|.|+|++||++|+++++
T Consensus 380 d~~~~~G~~Ip~Gt~V~~~~~~~~rd~~~~G~dp~~F~PeRwl~~~~~~~~~~~~~~pFg~G~R~CiG~~~A~~e~~~~l 459 (502)
T PLN02426 380 DDVLPDGTFVAKGTRVTYHPYAMGRMERIWGPDCLEFKPERWLKNGVFVPENPFKYPVFQAGLRVCLGKEMALMEMKSVA 459 (502)
T ss_pred CCCcCCCcEECCCCEEEEchHHhcCCccccCcChhhcCccccCCCCCcCCCCCcccCCCCCCCCCCccHHHHHHHHHHHH
Confidence 7776 9999999999999999999999999 9999999999997432112245579999999999999999999999999
Q ss_pred HHHhhhceeecCCCCCCCcCCcccccceeeecCCceeEEeeecCCC
Q 036473 159 AQLVHCFDWELPEGMLPTELDMTEEFGLVTYRAKHLLAVPSYRLST 204 (204)
Q Consensus 159 a~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 204 (204)
+.|+++|++++.++.. .......++++.|+.++.+++++|..|
T Consensus 460 a~ll~~f~~~~~~~~~---~~~~~~~~~~~~~~~gl~v~~~~r~~~ 502 (502)
T PLN02426 460 VAVVRRFDIEVVGRSN---RAPRFAPGLTATVRGGLPVRVRERVRT 502 (502)
T ss_pred HHHHHHceEEEecCCC---CCCcccceeEEecCCCEEEEEEEccCC
Confidence 9999999999864321 111223467788999999999999764
No 17
>PLN02738 carotene beta-ring hydroxylase
Probab=100.00 E-value=6.5e-50 Score=349.29 Aligned_cols=197 Identities=32% Similarity=0.570 Sum_probs=173.4
Q ss_pred CcccccccchHHHHHHHHHHHHhChHHHHHHHHHHHHHhCCCCCCCccccCCChhHHHHHHhhcCCCCCCCCCCccccCC
Q 036473 1 DMLAGAMDTSPTVVEWALSELIKHPAVMKKLQRELENIVGLKRMVEESDLENLEYLDMVVKETLRLHPVAPLMAPHESME 80 (204)
Q Consensus 1 d~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~~~~~~~~~~~~~~~l~~l~a~i~E~lRl~p~~~~~~~r~~~~ 80 (204)
++++||+|||+++|+|++++|++||++|+|||+|++++++. ..++.+++++||||+|||+|+||++|+++.. .|.+.+
T Consensus 398 ~ll~AG~eTTA~tLt~~l~~L~~~Pevq~kLreEl~~v~~~-~~~t~edL~kLPYL~AVIkEtLRL~p~~p~~-~R~a~~ 475 (633)
T PLN02738 398 TMLIAGHETSAAVLTWTFYLLSKEPSVVAKLQEEVDSVLGD-RFPTIEDMKKLKYTTRVINESLRLYPQPPVL-IRRSLE 475 (633)
T ss_pred HHHhcCCccHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCC-CCCCHHHHccCHHHHHHHHHHHhcCCCcccc-ceeecc
Confidence 36899999999999999999999999999999999999874 5678899999999999999999999999987 577889
Q ss_pred CceeccEEeCCCCEEEEeehhhccCCCCCCCCCCCCCCccCCCCC--CCCCCCCceeeccCCCCCCccHHHHHHHHHHHH
Q 036473 81 DCTVNGFHIPKKSRVIVNAWAIGRDPKAWNDPEKFFPERFVGSSV--DVRGRDFQLLPFGSGRRACPGMQLALTVVKQVT 158 (204)
Q Consensus 81 ~~~~~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~--~~~~~~~~~~pFg~G~r~C~G~~lA~~~~~~~l 158 (204)
|.+++||.||+||.|.++.+.+||||++|+||++|+||||+.... .....+..|+|||.|+|+|+|++||++|+++++
T Consensus 476 d~~i~gy~IPkGT~V~~s~~~ihrdp~ifpdP~~F~PERWl~~~~~~~~~~~~~~~vpFG~G~R~CiG~~lA~~El~l~L 555 (633)
T PLN02738 476 NDMLGGYPIKRGEDIFISVWNLHRSPKHWDDAEKFNPERWPLDGPNPNETNQNFSYLPFGGGPRKCVGDMFASFENVVAT 555 (633)
T ss_pred CceECCEEECCCCEEEecHHHHhCCccccCCccccCcccCCCCCCCccccCCCCceeCCCCCCCCCcCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999985321 222345689999999999999999999999999
Q ss_pred HHHhhhceeecCCCCCCCcCCcccccceeeecCCceeEEeeecCC
Q 036473 159 AQLVHCFDWELPEGMLPTELDMTEEFGLVTYRAKHLLAVPSYRLS 203 (204)
Q Consensus 159 a~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 203 (204)
|.|+++|+|++.++.. + .....+.++.++.++.+++++|..
T Consensus 556 A~Llr~F~~el~~~~~--~--~~~~~~~~~~p~~~l~v~l~~R~~ 596 (633)
T PLN02738 556 AMLVRRFDFQLAPGAP--P--VKMTTGATIHTTEGLKMTVTRRTK 596 (633)
T ss_pred HHHHHhCeeEeCCCCC--C--cccccceEEeeCCCcEEEEEECCC
Confidence 9999999999877631 1 222345677788899999999864
No 18
>PLN02290 cytokinin trans-hydroxylase
Probab=100.00 E-value=3.7e-50 Score=345.48 Aligned_cols=193 Identities=25% Similarity=0.455 Sum_probs=172.7
Q ss_pred CcccccccchHHHHHHHHHHHHhChHHHHHHHHHHHHHhCCCCCCCccccCCChhHHHHHHhhcCCCCCCCCCCccccCC
Q 036473 1 DMLAGAMDTSPTVVEWALSELIKHPAVMKKLQRELENIVGLKRMVEESDLENLEYLDMVVKETLRLHPVAPLMAPHESME 80 (204)
Q Consensus 1 d~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~~~~~~~~~~~~~~~l~~l~a~i~E~lRl~p~~~~~~~r~~~~ 80 (204)
++++||+|||+++++|++++|++||++|+|+++|++++++.+ .++.+++++|||++|||+|+||++|+++.+ +|.+.+
T Consensus 323 ~~~~AG~dTta~tl~~~l~~L~~~P~vq~kl~~Ei~~v~~~~-~~~~~~l~~lpYl~avi~EtlRl~p~~~~~-~R~~~~ 400 (516)
T PLN02290 323 TFFFAGHETTALLLTWTLMLLASNPTWQDKVRAEVAEVCGGE-TPSVDHLSKLTLLNMVINESLRLYPPATLL-PRMAFE 400 (516)
T ss_pred HHHhhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCC-CCCHHHHhcChHHHHHHHHHHHcCCCcccc-ceeecC
Confidence 368999999999999999999999999999999999998764 678899999999999999999999999975 899999
Q ss_pred CceeccEEeCCCCEEEEeehhhccCCCCC-CCCCCCCCCccCCCCCCCCCCCCceeeccCCCCCCccHHHHHHHHHHHHH
Q 036473 81 DCTVNGFHIPKKSRVIVNAWAIGRDPKAW-NDPEKFFPERFVGSSVDVRGRDFQLLPFGSGRRACPGMQLALTVVKQVTA 159 (204)
Q Consensus 81 ~~~~~g~~ip~g~~v~~~~~~~~~d~~~~-~~p~~F~P~R~l~~~~~~~~~~~~~~pFg~G~r~C~G~~lA~~~~~~~la 159 (204)
|++++|+.||+|+.|.++.+++||||++| +||++|+||||++.+. .....|+|||.|+|.|+|++||++|++++++
T Consensus 401 d~~i~g~~IP~Gt~V~~~~~~~~rdp~~~~~dP~~F~PeRfl~~~~---~~~~~~~pFG~G~R~C~G~~lA~~el~l~la 477 (516)
T PLN02290 401 DIKLGDLHIPKGLSIWIPVLAIHHSEELWGKDANEFNPDRFAGRPF---APGRHFIPFAAGPRNCIGQAFAMMEAKIILA 477 (516)
T ss_pred CeeECCEEECCCCEEEecHHHhcCChhhhCCChhhcCccccCCCCC---CCCCeEecCCCCCCCCccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 8999999999995421 1234799999999999999999999999999
Q ss_pred HHhhhceeecCCCCCCCcCCcccccceeeecCCceeEEeeecCC
Q 036473 160 QLVHCFDWELPEGMLPTELDMTEEFGLVTYRAKHLLAVPSYRLS 203 (204)
Q Consensus 160 ~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 203 (204)
.|+++|++++.++. . .....++++.|+.++.+++++|++
T Consensus 478 ~ll~~f~~~~~~~~---~--~~~~~~~~~~p~~~~~~~~~~~~~ 516 (516)
T PLN02290 478 MLISKFSFTISDNY---R--HAPVVVLTIKPKYGVQVCLKPLNP 516 (516)
T ss_pred HHHHhceEeeCCCc---c--cCccceeeecCCCCCeEEEEeCCC
Confidence 99999999987652 1 112235778899999999999974
No 19
>PLN03195 fatty acid omega-hydroxylase; Provisional
Probab=100.00 E-value=4e-50 Score=345.30 Aligned_cols=196 Identities=27% Similarity=0.425 Sum_probs=166.3
Q ss_pred CcccccccchHHHHHHHHHHHHhChHHHHHHHHHHHHHhCC--------------------CCCCCccccCCChhHHHHH
Q 036473 1 DMLAGAMDTSPTVVEWALSELIKHPAVMKKLQRELENIVGL--------------------KRMVEESDLENLEYLDMVV 60 (204)
Q Consensus 1 d~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~~~~--------------------~~~~~~~~~~~l~~l~a~i 60 (204)
++++||+|||+++++|++++|++||++|+||++|++++... ++.++.+++.+|||++|||
T Consensus 299 ~ll~AG~dTTa~tl~~~l~~L~~~P~vq~kl~~Ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lpyl~Avi 378 (516)
T PLN03195 299 NFVIAGRDTTATTLSWFVYMIMMNPHVAEKLYSELKALEKERAKEEDPEDSQSFNQRVTQFAGLLTYDSLGKLQYLHAVI 378 (516)
T ss_pred HHHHHhhHhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhcccccccccccchhhhhcccccCCCCHHHHhcCHHHHHHH
Confidence 36899999999999999999999999999999999987642 2346788899999999999
Q ss_pred HhhcCCCCCCCCCCccccCCCce-eccEEeCCCCEEEEeehhhccCCCCC-CCCCCCCCCccCCCCCCCCCCCCceeecc
Q 036473 61 KETLRLHPVAPLMAPHESMEDCT-VNGFHIPKKSRVIVNAWAIGRDPKAW-NDPEKFFPERFVGSSVDVRGRDFQLLPFG 138 (204)
Q Consensus 61 ~E~lRl~p~~~~~~~r~~~~~~~-~~g~~ip~g~~v~~~~~~~~~d~~~~-~~p~~F~P~R~l~~~~~~~~~~~~~~pFg 138 (204)
+|+||++|+++.. .|.+.+|.. ++|+.||||+.|.++.+.+||||++| +||++|+||||++++......+..|+|||
T Consensus 379 ~EtLRl~p~~p~~-~r~~~~d~~~~~G~~IpkGt~V~~~~~~~h~dp~~~g~dP~~F~PeRwl~~~~~~~~~~~~~~pFG 457 (516)
T PLN03195 379 TETLRLYPAVPQD-PKGILEDDVLPDGTKVKAGGMVTYVPYSMGRMEYNWGPDAASFKPERWIKDGVFQNASPFKFTAFQ 457 (516)
T ss_pred HHHhhcCCCCcch-hhhhccCcCcCCCcEECCCCEEEEehHhhccChhhhccChhhcCCcccCCCCCcCCCCCceEeccC
Confidence 9999999999988 454555555 49999999999999999999999999 99999999999964321223456799999
Q ss_pred CCCCCCccHHHHHHHHHHHHHHHhhhceeecCCCCCCCcCCcccccceeeecCCceeEEeeecC
Q 036473 139 SGRRACPGMQLALTVVKQVTAQLVHCFDWELPEGMLPTELDMTEEFGLVTYRAKHLLAVPSYRL 202 (204)
Q Consensus 139 ~G~r~C~G~~lA~~~~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 202 (204)
+|+|+|+|++||++|++++++.|+++|++++.++. +.. .....+..|+.++.+++++|.
T Consensus 458 ~G~R~CiG~~lA~~e~~~~la~ll~~f~~~~~~~~---~~~--~~~~~~~~~~~~~~v~~~~r~ 516 (516)
T PLN03195 458 AGPRICLGKDSAYLQMKMALALLCRFFKFQLVPGH---PVK--YRMMTILSMANGLKVTVSRRS 516 (516)
T ss_pred CCCCcCcCHHHHHHHHHHHHHHHHHhceeEecCCC---cce--eeeeeEEecCCCEEEEEEeCC
Confidence 99999999999999999999999999999986552 222 223345678889999999884
No 20
>PLN02500 cytochrome P450 90B1
Probab=100.00 E-value=7.5e-50 Score=341.65 Aligned_cols=192 Identities=26% Similarity=0.392 Sum_probs=164.8
Q ss_pred CcccccccchHHHHHHHHHHHHhChHHHHHHHHHHHHHhC-----CCCCCCccccCCChhHHHHHHhhcCCCCCCCCCCc
Q 036473 1 DMLAGAMDTSPTVVEWALSELIKHPAVMKKLQRELENIVG-----LKRMVEESDLENLEYLDMVVKETLRLHPVAPLMAP 75 (204)
Q Consensus 1 d~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~~~-----~~~~~~~~~~~~l~~l~a~i~E~lRl~p~~~~~~~ 75 (204)
++++||+|||+++++|++++|++||++|+|+++|++++.+ .+..++.+++.+|||++|||+|+||++|+++.. .
T Consensus 286 ~ll~AG~dTta~tl~~~l~~L~~~Pevq~kl~~Ei~~v~~~~~~~~~~~~~~~d~~~lpyl~avikEtlRl~P~~~~~-~ 364 (490)
T PLN02500 286 SLLFAGHETSSVAIALAIFFLQGCPKAVQELREEHLEIARAKKQSGESELNWEDYKKMEFTQCVINETLRLGNVVRFL-H 364 (490)
T ss_pred HHHHhhhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhccccCCCCCCCHHHhccCHHHHHHHHHHHhcCCCccCe-e
Confidence 4789999999999999999999999999999999999863 223578899999999999999999999999986 7
Q ss_pred cccCCCceeccEEeCCCCEEEEeehhhccCCCCCCCCCCCCCCccCCCCCCCC------CCCCceeeccCCCCCCccHHH
Q 036473 76 HESMEDCTVNGFHIPKKSRVIVNAWAIGRDPKAWNDPEKFFPERFVGSSVDVR------GRDFQLLPFGSGRRACPGMQL 149 (204)
Q Consensus 76 r~~~~~~~~~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~~~------~~~~~~~pFg~G~r~C~G~~l 149 (204)
|.+.+|++++||.||||+.|.++.+++||||++|+||++|+||||++++.... ..+..|+|||.|+|.|+|++|
T Consensus 365 R~~~~d~~~~G~~IPkGt~V~~~~~~~hrdp~~~~dP~~F~PeRfl~~~~~~~~~~~~~~~~~~~lpFG~G~R~CiG~~~ 444 (490)
T PLN02500 365 RKALKDVRYKGYDIPSGWKVLPVIAAVHLDSSLYDQPQLFNPWRWQQNNNRGGSSGSSSATTNNFMPFGGGPRLCAGSEL 444 (490)
T ss_pred eEeCCCceeCCEEECCCCEEEechhhcccCcccCCCccccChhhccCCCcccccccccCCCCCCCcCCCCCCCCCCcHHH
Confidence 99999999999999999999999999999999999999999999997543211 235679999999999999999
Q ss_pred HHHHHHHHHHHHhhhceeecCCCCCCCcCCcccccceeeecCCceeEEeee
Q 036473 150 ALTVVKQVTAQLVHCFDWELPEGMLPTELDMTEEFGLVTYRAKHLLAVPSY 200 (204)
Q Consensus 150 A~~~~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (204)
|++|++++++.|+++|+|++.++..+ .. +..+ .++.++.+++.+
T Consensus 445 A~~el~~~la~ll~~f~~~~~~~~~~----~~--~~~~-~~~~~l~~~~~~ 488 (490)
T PLN02500 445 AKLEMAVFIHHLVLNFNWELAEADQA----FA--FPFV-DFPKGLPIRVRR 488 (490)
T ss_pred HHHHHHHHHHHHHhccEEEEcCCCcc----ee--cccc-cCCCCceEEEEe
Confidence 99999999999999999998765321 11 1122 334588877764
No 21
>PLN02655 ent-kaurene oxidase
Probab=100.00 E-value=1.2e-49 Score=338.39 Aligned_cols=197 Identities=35% Similarity=0.610 Sum_probs=176.5
Q ss_pred CcccccccchHHHHHHHHHHHHhChHHHHHHHHHHHHHhCCCCCCCccccCCChhHHHHHHhhcCCCCCCCCCCccccCC
Q 036473 1 DMLAGAMDTSPTVVEWALSELIKHPAVMKKLQRELENIVGLKRMVEESDLENLEYLDMVVKETLRLHPVAPLMAPHESME 80 (204)
Q Consensus 1 d~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~~~~~~~~~~~~~~~l~~l~a~i~E~lRl~p~~~~~~~r~~~~ 80 (204)
++++||+|||+++++|++++|++||++|+|+++||+++++.+. ++.+++.++||++|||+|+||++|+++...+|.+.+
T Consensus 269 ~~~~ag~dtta~~l~~~~~~l~~~p~~~~~l~~Ei~~~~~~~~-~~~~~l~~l~yl~a~i~EtlRl~p~~~~~~~r~~~~ 347 (466)
T PLN02655 269 EPIIEAADTTLVTTEWAMYELAKNPDKQERLYREIREVCGDER-VTEEDLPNLPYLNAVFHETLRKYSPVPLLPPRFVHE 347 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhCCCC-CCHHHHhcChHHHHHHHHHhccCCCcCCCCCcccCC
Confidence 3689999999999999999999999999999999999987644 888999999999999999999999999887899999
Q ss_pred CceeccEEeCCCCEEEEeehhhccCCCCCCCCCCCCCCccCCCCCCCCCCCCceeeccCCCCCCccHHHHHHHHHHHHHH
Q 036473 81 DCTVNGFHIPKKSRVIVNAWAIGRDPKAWNDPEKFFPERFVGSSVDVRGRDFQLLPFGSGRRACPGMQLALTVVKQVTAQ 160 (204)
Q Consensus 81 ~~~~~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~pFg~G~r~C~G~~lA~~~~~~~la~ 160 (204)
|++++|+.||||+.|.++.+++||||++|+||++|+|+||++++.. ......++|||.|+|.|+|++||..+++++++.
T Consensus 348 d~~~~g~~ip~gt~v~~~~~~~~~d~~~~~~p~~F~PeR~~~~~~~-~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ 426 (466)
T PLN02655 348 DTTLGGYDIPAGTQIAINIYGCNMDKKRWENPEEWDPERFLGEKYE-SADMYKTMAFGAGKRVCAGSLQAMLIACMAIAR 426 (466)
T ss_pred CcccCCEEECCCCEEEecHHHhcCCcccCCChhccCccccCCCCcc-cCCcccccCCCCCCCCCCcHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999975422 123467999999999999999999999999999
Q ss_pred HhhhceeecCCCCCCCcCCcccccceeeecCCceeEEeeecCC
Q 036473 161 LVHCFDWELPEGMLPTELDMTEEFGLVTYRAKHLLAVPSYRLS 203 (204)
Q Consensus 161 ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 203 (204)
||++|+|++.++.. .....++++..++.++.+.+++|.+
T Consensus 427 ll~~f~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~r~~ 465 (466)
T PLN02655 427 LVQEFEWRLREGDE----EKEDTVQLTTQKLHPLHAHLKPRGS 465 (466)
T ss_pred HHHHeEEEeCCCCc----cccchhheeEeecCCcEEEEeecCC
Confidence 99999999876631 1233567778888999999999975
No 22
>PF00067 p450: Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature; InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry. In mammals, these proteins are found primarily in microsomes of hepatocytes and other cell types, where they oxidise steroids, fatty acids and xenobiotics, and are important for the detoxification and clearance of various compounds, as well as for hormone synthesis and breakdown, cholesterol synthesis and vitamin D metabolism. In plants, these proteins are important for the biosynthesis of several compounds such as hormones, defensive compounds and fatty acids. In bacteria, they are important for several metabolic processes, such as the biosynthesis of antibiotic erythromycin in Saccharopolyspora erythraea (Streptomyces erythraeus). Cytochrome P450 enzymes use haem to oxidise their substrates, using protons derived from NADH or NADPH to split the oxygen so a single atom can be added to a substrate. They also require electrons, which they receive from a variety of redox partners. In certain cases, cytochrome P450 can be fused to its redox partner to produce a bi-functional protein, such as with P450BM-3 from Bacillus megaterium [], which has haem and flavin domains. Organisms produce many different cytochrome P450 enzymes (at least 58 in humans), which together with alternative splicing can provide a wide array of enzymes with different substrate and tissue specificities. Individual cytochrome P450 proteins follow the nomenclature: CYP, followed by a number (family), then a letter (subfamily), and another number (protein); e.g. CYP3A4 is the fourth protein in family 3, subfamily A. In general, family members should share >40% identity, while subfamily members should share >55% identity. Cytochrome P450 proteins can also be grouped by two different schemes. One scheme was based on a taxonomic split: class I (prokaryotic/mitochondrial) and class II (eukaryotic microsomes). The other scheme was based on the number of components in the system: class B (3-components) and class E (2-components). These classes merge to a certain degree. Most prokaryotes and mitochondria (and fungal CYP55) have 3-component systems (class I/class B) - a FAD-containing flavoprotein (NAD(P)H-dependent reductase), an iron-sulphur protein and P450. Most eukaryotic microsomes have 2-component systems (class II/class E) - NADPH:P450 reductase (FAD and FMN-containing flavoprotein) and P450. There are exceptions to this scheme, such as 1-component systems that resemble class E enzymes [, , ]. The class E enzymes can be further subdivided into five sequence clusters, groups I-V, each of which may contain more than one cytochrome P450 family (eg, CYP1 and CYP2 are both found in group I). The divergence of the cytochrome P450 superfamily into B- and E-classes, and further divergence into stable clusters within the E-class, appears to be very ancient, occurring before the appearance of eukaryotes. More information about these proteins can be found at Protein of the Month: Cytochrome P450 [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0020037 heme binding, 0055114 oxidation-reduction process; PDB: 2RFC_B 2RFB_A 3EJB_H 3EJE_H 3EJD_H 1N6B_A 1NR6_A 1DT6_A 3EL3_A 3DBG_B ....
Probab=100.00 E-value=2.6e-50 Score=338.04 Aligned_cols=171 Identities=42% Similarity=0.743 Sum_probs=157.0
Q ss_pred cccccccchHHHHHHHHHHHHhChHHHHHHHHHHHHHhCCCCCCCccccCCChhHHHHHHhhcCCCCCCCCCCccccCCC
Q 036473 2 MLAGAMDTSPTVVEWALSELIKHPAVMKKLQRELENIVGLKRMVEESDLENLEYLDMVVKETLRLHPVAPLMAPHESMED 81 (204)
Q Consensus 2 ~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~~~~~~~~~~~~~~~l~~l~a~i~E~lRl~p~~~~~~~r~~~~~ 81 (204)
+++||+|||+++++|++++|++||++|++|++||+++.+..+.++.+++.++|||+|||+|+||++|+++...+|.+.+|
T Consensus 270 ~~~ag~dtt~~~l~~~l~~L~~~P~~~~kl~~Ei~~~~~~~~~~~~~~l~~l~yl~a~i~EtlRl~p~~~~~~~R~~~~d 349 (463)
T PF00067_consen 270 LLFAGHDTTASTLSWTLYELAKNPEVQEKLREEIDSVLGDGREITFEDLSKLPYLDAVIKETLRLYPPVPFSLPRVATED 349 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHTTTSSSHHHHHHGTGHHHHHHHHHHHHHSTSSSTEEEEEESSS
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 67899999999999999999999999999999999998666678889999999999999999999999995558999999
Q ss_pred ceeccEEeCCCCEEEEeehhhccCCCCCCCCCCCCCCccCCCCCCCCCCCCceeeccCCCCCCccHHHHHHHHHHHHHHH
Q 036473 82 CTVNGFHIPKKSRVIVNAWAIGRDPKAWNDPEKFFPERFVGSSVDVRGRDFQLLPFGSGRRACPGMQLALTVVKQVTAQL 161 (204)
Q Consensus 82 ~~~~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~pFg~G~r~C~G~~lA~~~~~~~la~l 161 (204)
++++|+.||+|+.|.++.+.+|+||++|+||++|+|+||++.+.........|+|||.|+|.|+|++||++|+++++|.|
T Consensus 350 ~~l~g~~ip~gt~v~~~~~~~~~d~~~~~dp~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~la~l 429 (463)
T PF00067_consen 350 VTLGGYFIPKGTIVIVSIYALHRDPEYFPDPDEFDPERFLDERGISNRPSFAFLPFGAGPRMCPGRNLAMMEMKVFLAKL 429 (463)
T ss_dssp EEETTEEEETTSEEEEEHHHHTTSTTTSSSTTS--TTGGBTTTSTBCSSSTTSSTTESSTTS-TTHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998865233456789999999999999999999999999999
Q ss_pred hhhceeecCCC
Q 036473 162 VHCFDWELPEG 172 (204)
Q Consensus 162 l~~f~~~~~~~ 172 (204)
|++||+++.++
T Consensus 430 l~~f~~~~~~~ 440 (463)
T PF00067_consen 430 LRRFDFELVPG 440 (463)
T ss_dssp HHHEEEEESTT
T ss_pred HHhCEEEECCC
Confidence 99999999766
No 23
>PLN03018 homomethionine N-hydroxylase
Probab=100.00 E-value=3.4e-49 Score=340.09 Aligned_cols=199 Identities=33% Similarity=0.654 Sum_probs=174.0
Q ss_pred CcccccccchHHHHHHHHHHHHhChHHHHHHHHHHHHHhCCCCCCCccccCCChhHHHHHHhhcCCCCCCCCCCccccCC
Q 036473 1 DMLAGAMDTSPTVVEWALSELIKHPAVMKKLQRELENIVGLKRMVEESDLENLEYLDMVVKETLRLHPVAPLMAPHESME 80 (204)
Q Consensus 1 d~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~~~~~~~~~~~~~~~l~~l~a~i~E~lRl~p~~~~~~~r~~~~ 80 (204)
++++||+|||+++++|++++|+.||++|+|+++||+++++.++.++.+++.+|||++|||+|+||++|+++...+|.+.+
T Consensus 321 ~~~~aG~dTta~~l~~~l~~L~~~P~~q~kl~~Ei~~v~~~~~~~~~~~~~~lpyl~a~i~EtlRl~p~~~~~~~r~~~~ 400 (534)
T PLN03018 321 EFCIAAIDNPANNMEWTLGEMLKNPEILRKALKELDEVVGKDRLVQESDIPNLNYLKACCRETFRIHPSAHYVPPHVARQ 400 (534)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhCCCCCCCHHHhcCCHHHHHHHHHHHhcCCCccccCCcccCC
Confidence 36899999999999999999999999999999999999887667888899999999999999999999999876799999
Q ss_pred CceeccEEeCCCCEEEEeehhhccCCCCCCCCCCCCCCccCCCCCCC-----CCCCCceeeccCCCCCCccHHHHHHHHH
Q 036473 81 DCTVNGFHIPKKSRVIVNAWAIGRDPKAWNDPEKFFPERFVGSSVDV-----RGRDFQLLPFGSGRRACPGMQLALTVVK 155 (204)
Q Consensus 81 ~~~~~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~~-----~~~~~~~~pFg~G~r~C~G~~lA~~~~~ 155 (204)
|++++|+.||||+.|.++.+++|+||++|+||++|+||||++++... ...+..|+|||.|+|.|+|++||++|++
T Consensus 401 d~~i~G~~IpkGt~V~~~~~~~~~dp~~~~~p~~F~PeRfl~~~~~~~~~~~~~~~~~~lpFG~G~R~C~G~~lA~~e~~ 480 (534)
T PLN03018 401 DTTLGGYFIPKGSHIHVCRPGLGRNPKIWKDPLVYEPERHLQGDGITKEVTLVETEMRFVSFSTGRRGCVGVKVGTIMMV 480 (534)
T ss_pred CeeECCEEECCCCEEEEChHHhcCCcccCCCccccCCccCCCCCCccccccccCCCCCccCCCCCCCCCccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999754321 1235679999999999999999999999
Q ss_pred HHHHHHhhhceeecCCCCCCCcCCcccccceeeecCCceeEEeeecC
Q 036473 156 QVTAQLVHCFDWELPEGMLPTELDMTEEFGLVTYRAKHLLAVPSYRL 202 (204)
Q Consensus 156 ~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 202 (204)
++++.|+++|+|++.++. ...+.....+.+.. +.++.+.+++|.
T Consensus 481 ~~la~ll~~f~~~~~~~~--~~~~~~~~~~~~~~-p~~~~v~~~~R~ 524 (534)
T PLN03018 481 MMLARFLQGFNWKLHQDF--GPLSLEEDDASLLM-AKPLLLSVEPRL 524 (534)
T ss_pred HHHHHHHHhceEEeCCCC--CCCCccccccceec-CCCeEEEEEecc
Confidence 999999999999987652 12333333354444 469999999995
No 24
>PLN02774 brassinosteroid-6-oxidase
Probab=100.00 E-value=9.3e-49 Score=332.80 Aligned_cols=189 Identities=25% Similarity=0.387 Sum_probs=164.2
Q ss_pred CcccccccchHHHHHHHHHHHHhChHHHHHHHHHHHHHhCC---CCCCCccccCCChhHHHHHHhhcCCCCCCCCCCccc
Q 036473 1 DMLAGAMDTSPTVVEWALSELIKHPAVMKKLQRELENIVGL---KRMVEESDLENLEYLDMVVKETLRLHPVAPLMAPHE 77 (204)
Q Consensus 1 d~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~~~~---~~~~~~~~~~~l~~l~a~i~E~lRl~p~~~~~~~r~ 77 (204)
++++||+|||+++++|++++|++||++|+|+++|++++.+. +..++.++++++||++|||+|+||++|+++.+ .|.
T Consensus 271 ~ll~Ag~dTt~~~l~w~l~~L~~~P~~q~kl~~Ei~~~~~~~~~~~~~~~~~l~~lpyl~a~ikE~lRl~P~v~~~-~R~ 349 (463)
T PLN02774 271 TILYSGYETVSTTSMMAVKYLHDHPKALQELRKEHLAIRERKRPEDPIDWNDYKSMRFTRAVIFETSRLATIVNGV-LRK 349 (463)
T ss_pred HHHHhcchhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhccCCCCCCCHHHHhcCcHHHHHHHHHHhcCCCCCCc-ccc
Confidence 36889999999999999999999999999999999999753 24578889999999999999999999999876 699
Q ss_pred cCCCceeccEEeCCCCEEEEeehhhccCCCCCCCCCCCCCCccCCCCCCCCCCCCceeeccCCCCCCccHHHHHHHHHHH
Q 036473 78 SMEDCTVNGFHIPKKSRVIVNAWAIGRDPKAWNDPEKFFPERFVGSSVDVRGRDFQLLPFGSGRRACPGMQLALTVVKQV 157 (204)
Q Consensus 78 ~~~~~~~~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~pFg~G~r~C~G~~lA~~~~~~~ 157 (204)
+.+|++++|+.||||+.|+++.+.+|+||++|+||++|+||||++++.. ....|+|||+|+|+|+|++||.+|++++
T Consensus 350 ~~~d~~l~g~~IpkGt~v~~~~~~~~rdp~~~~dP~~F~PeRfl~~~~~---~~~~~lpFG~G~r~C~G~~~A~~e~~~~ 426 (463)
T PLN02774 350 TTQDMELNGYVIPKGWRIYVYTREINYDPFLYPDPMTFNPWRWLDKSLE---SHNYFFLFGGGTRLCPGKELGIVEISTF 426 (463)
T ss_pred cCCCeeECCEEECCCCEEEEehHHhcCCcccCCChhccCchhcCCCCcC---CCccccCcCCCCCcCCcHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999965421 1236999999999999999999999999
Q ss_pred HHHHhhhceeecCCCCCCCcCCcccccceeeecCCceeEEeee
Q 036473 158 TAQLVHCFDWELPEGMLPTELDMTEEFGLVTYRAKHLLAVPSY 200 (204)
Q Consensus 158 la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (204)
++.|+++|+|++.++..+ . ... ++.|++++.+++++
T Consensus 427 la~Ll~~f~~~~~~~~~~---~---~~~-~~~p~~g~~~~~~~ 462 (463)
T PLN02774 427 LHYFVTRYRWEEVGGDKL---M---KFP-RVEAPNGLHIRVSP 462 (463)
T ss_pred HHHHHHhceEEECCCCcc---c---cCC-CCCCCCCceEEeee
Confidence 999999999999766311 1 111 23367888888764
No 25
>PLN03141 3-epi-6-deoxocathasterone 23-monooxygenase; Provisional
Probab=100.00 E-value=2.1e-48 Score=329.72 Aligned_cols=190 Identities=23% Similarity=0.351 Sum_probs=168.7
Q ss_pred CcccccccchHHHHHHHHHHHHhChHHHHHHHHHHHHHhC----CCCCCCccccCCChhHHHHHHhhcCCCCCCCCCCcc
Q 036473 1 DMLAGAMDTSPTVVEWALSELIKHPAVMKKLQRELENIVG----LKRMVEESDLENLEYLDMVVKETLRLHPVAPLMAPH 76 (204)
Q Consensus 1 d~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~~~----~~~~~~~~~~~~l~~l~a~i~E~lRl~p~~~~~~~r 76 (204)
++++||+|||+++++|++++|+.||++|+++++|++++.. ....++.+++.+|||++|||+|+||++|+++.+ +|
T Consensus 258 ~ll~Ag~dTts~tl~~~~~~L~~~P~v~~kl~~Ei~~~~~~~~~~~~~~~~~~~~~lpyl~avi~E~lRl~p~~~~~-~R 336 (452)
T PLN03141 258 DMMIPGEDSVPVLMTLAVKFLSDCPVALQQLTEENMKLKRLKADTGEPLYWTDYMSLPFTQNVITETLRMGNIINGV-MR 336 (452)
T ss_pred HHHHhcchhHHHHHHHHHHHHHhChHHHHHHHHHHHHHHhccCCCCCCCCHHHHhccHHHHHHHHHHHhccCCcCCc-ce
Confidence 4789999999999999999999999999999999988753 233467788999999999999999999999866 79
Q ss_pred ccCCCceeccEEeCCCCEEEEeehhhccCCCCCCCCCCCCCCccCCCCCCCCCCCCceeeccCCCCCCccHHHHHHHHHH
Q 036473 77 ESMEDCTVNGFHIPKKSRVIVNAWAIGRDPKAWNDPEKFFPERFVGSSVDVRGRDFQLLPFGSGRRACPGMQLALTVVKQ 156 (204)
Q Consensus 77 ~~~~~~~~~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~pFg~G~r~C~G~~lA~~~~~~ 156 (204)
.+.+|++++||.||||+.|.++.+++|+||++|+||++|+||||++++. .+..|+|||+|+|+|+|++||.+|+++
T Consensus 337 ~~~~d~~l~g~~IPkG~~V~~~~~~~~~d~~~~~dP~~F~PeRfl~~~~----~~~~~~pFG~G~R~C~G~~lA~~el~~ 412 (452)
T PLN03141 337 KAMKDVEIKGYLIPKGWCVLAYFRSVHLDEENYDNPYQFNPWRWQEKDM----NNSSFTPFGGGQRLCPGLDLARLEASI 412 (452)
T ss_pred eecCCeeECCEEECCCCEEEEehHhccCCchhcCCccccCcccccCCCC----CCCCCCCCCCCCCCCChHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999997532 355799999999999999999999999
Q ss_pred HHHHHhhhceeecCCCCCCCcCCcccccceeeecCCceeEEeeecCC
Q 036473 157 VTAQLVHCFDWELPEGMLPTELDMTEEFGLVTYRAKHLLAVPSYRLS 203 (204)
Q Consensus 157 ~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 203 (204)
++|.|+++|+|++.++. .. ...++.|+.++.+.+.+|..
T Consensus 413 ~la~ll~~f~~~~~~~~---~~-----~~~~~~~~~~~~~~~~~~~~ 451 (452)
T PLN03141 413 FLHHLVTRFRWVAEEDT---IV-----NFPTVRMKRKLPIWVTRIDD 451 (452)
T ss_pred HHHHHHhcCeeecCCCC---ee-----ecccccCCCCceEEEEeCCC
Confidence 99999999999986652 11 12466888999999999965
No 26
>PLN02936 epsilon-ring hydroxylase
Probab=100.00 E-value=3.2e-48 Score=331.46 Aligned_cols=196 Identities=29% Similarity=0.513 Sum_probs=171.5
Q ss_pred CcccccccchHHHHHHHHHHHHhChHHHHHHHHHHHHHhCCCCCCCccccCCChhHHHHHHhhcCCCCCCCCCCccccCC
Q 036473 1 DMLAGAMDTSPTVVEWALSELIKHPAVMKKLQRELENIVGLKRMVEESDLENLEYLDMVVKETLRLHPVAPLMAPHESME 80 (204)
Q Consensus 1 d~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~~~~~~~~~~~~~~~l~~l~a~i~E~lRl~p~~~~~~~r~~~~ 80 (204)
++++||+|||+++++|++++|++||++|+++++|++++++. ...+.+++++||||+|||+|+||++|+++...+|.+..
T Consensus 285 ~~~~aG~dTta~~l~~~l~~L~~~p~~~~kl~~Ei~~~~~~-~~~~~~~~~~lpyl~avi~EtlRl~p~~~~~~~r~~~~ 363 (489)
T PLN02936 285 SMLVAGHETTGSVLTWTLYLLSKNPEALRKAQEELDRVLQG-RPPTYEDIKELKYLTRCINESMRLYPHPPVLIRRAQVE 363 (489)
T ss_pred HHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcC-CCCCHHHHhhCHHHHHHHHHhhhcCCCcccccceeccC
Confidence 36889999999999999999999999999999999999875 34678889999999999999999999999887787788
Q ss_pred CceeccEEeCCCCEEEEeehhhccCCCCCCCCCCCCCCccCCCCCC--CCCCCCceeeccCCCCCCccHHHHHHHHHHHH
Q 036473 81 DCTVNGFHIPKKSRVIVNAWAIGRDPKAWNDPEKFFPERFVGSSVD--VRGRDFQLLPFGSGRRACPGMQLALTVVKQVT 158 (204)
Q Consensus 81 ~~~~~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~--~~~~~~~~~pFg~G~r~C~G~~lA~~~~~~~l 158 (204)
|+.++|+.||+|+.|.++.+.+||||++|+||++|+||||+.++.. ....+..|+|||.|+|.|+|++||++|+++++
T Consensus 364 ~~~~~g~~Ip~Gt~v~~~~~~~~rd~~~~~dP~~F~PeRwl~~~~~~~~~~~~~~~~pFg~G~R~C~G~~la~~~~~~~l 443 (489)
T PLN02936 364 DVLPGGYKVNAGQDIMISVYNIHRSPEVWERAEEFVPERFDLDGPVPNETNTDFRYIPFSGGPRKCVGDQFALLEAIVAL 443 (489)
T ss_pred ccccCCeEECCCCEEEecHHhccCChhhCCCccccCccccCCCCCCccccCCCcceeCCCCCCCCCCCHHHHHHHHHHHH
Confidence 8888999999999999999999999999999999999999964321 12234579999999999999999999999999
Q ss_pred HHHhhhceeecCCCCCCCcCCcccccceeeecCCceeEEeeecC
Q 036473 159 AQLVHCFDWELPEGMLPTELDMTEEFGLVTYRAKHLLAVPSYRL 202 (204)
Q Consensus 159 a~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 202 (204)
+.|+++|++++.++ ++... ..++++.|+.++.+++++|.
T Consensus 444 a~ll~~f~~~~~~~---~~~~~--~~~~~~~~~~~~~v~~~~R~ 482 (489)
T PLN02936 444 AVLLQRLDLELVPD---QDIVM--TTGATIHTTNGLYMTVSRRR 482 (489)
T ss_pred HHHHHhCeEEecCC---Cccce--ecceEEeeCCCeEEEEEeee
Confidence 99999999998765 22222 23566778889999999885
No 27
>PLN02196 abscisic acid 8'-hydroxylase
Probab=100.00 E-value=2e-47 Score=324.57 Aligned_cols=189 Identities=25% Similarity=0.438 Sum_probs=166.9
Q ss_pred CcccccccchHHHHHHHHHHHHhChHHHHHHHHHHHHHhCC---CCCCCccccCCChhHHHHHHhhcCCCCCCCCCCccc
Q 036473 1 DMLAGAMDTSPTVVEWALSELIKHPAVMKKLQRELENIVGL---KRMVEESDLENLEYLDMVVKETLRLHPVAPLMAPHE 77 (204)
Q Consensus 1 d~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~~~~---~~~~~~~~~~~l~~l~a~i~E~lRl~p~~~~~~~r~ 77 (204)
++++||+|||+++++|++++|++||++|+|+++|++++.+. +..++.+++.++||++|||+|+||++|+++.. .|.
T Consensus 271 ~~~~Ag~dTta~~l~~~l~~L~~~P~vq~kl~~Ei~~~~~~~~~~~~~~~~~~~~l~yl~avi~EtlRl~p~~~~~-~R~ 349 (463)
T PLN02196 271 GVIFAARDTTASVLTWILKYLAENPSVLEAVTEEQMAIRKDKEEGESLTWEDTKKMPLTSRVIQETLRVASILSFT-FRE 349 (463)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhcccccCCCCCHHHHhcChHHHHHHHHHHhcCCCcccc-cee
Confidence 36899999999999999999999999999999999988753 34577888999999999999999999999987 588
Q ss_pred cCCCceeccEEeCCCCEEEEeehhhccCCCCCCCCCCCCCCccCCCCCCCCCCCCceeeccCCCCCCccHHHHHHHHHHH
Q 036473 78 SMEDCTVNGFHIPKKSRVIVNAWAIGRDPKAWNDPEKFFPERFVGSSVDVRGRDFQLLPFGSGRRACPGMQLALTVVKQV 157 (204)
Q Consensus 78 ~~~~~~~~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~pFg~G~r~C~G~~lA~~~~~~~ 157 (204)
+.+|+.++|+.||||+.|.++.+++|+||++|+||++|+||||++.. .+..++|||.|+|.|+|+++|++|++++
T Consensus 350 ~~~d~~i~g~~IpkGt~v~~~~~~~~rd~~~~~dP~~F~PeRfl~~~-----~~~~~lpFG~G~r~C~G~~~A~~e~~~~ 424 (463)
T PLN02196 350 AVEDVEYEGYLIPKGWKVLPLFRNIHHSADIFSDPGKFDPSRFEVAP-----KPNTFMPFGNGTHSCPGNELAKLEISVL 424 (463)
T ss_pred eccccccCCEEeCCCCEEEeeHHHhcCCchhcCCcCccChhhhcCCC-----CCCcccCcCCCCCCCchHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999632 3457999999999999999999999999
Q ss_pred HHHHhhhceeecCCCCCCCcCCcccccceeeecCCceeEEeeec
Q 036473 158 TAQLVHCFDWELPEGMLPTELDMTEEFGLVTYRAKHLLAVPSYR 201 (204)
Q Consensus 158 la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 201 (204)
++.|+++|+|++.++. .++ .+..+..|+.++.++++.+
T Consensus 425 la~ll~~f~~~~~~~~----~~~--~~~~~~~p~~~~~~~~~~~ 462 (463)
T PLN02196 425 IHHLTTKYRWSIVGTS----NGI--QYGPFALPQNGLPIALSRK 462 (463)
T ss_pred HHHHHHhcEEEEcCCC----Cce--EEcccccCCCCceEEEecC
Confidence 9999999999987642 122 3344456888888887764
No 28
>PLN02302 ent-kaurenoic acid oxidase
Probab=100.00 E-value=4e-47 Score=324.62 Aligned_cols=191 Identities=27% Similarity=0.404 Sum_probs=168.5
Q ss_pred cccccccchHHHHHHHHHHHHhChHHHHHHHHHHHHHhCCC----CCCCccccCCChhHHHHHHhhcCCCCCCCCCCccc
Q 036473 2 MLAGAMDTSPTVVEWALSELIKHPAVMKKLQRELENIVGLK----RMVEESDLENLEYLDMVVKETLRLHPVAPLMAPHE 77 (204)
Q Consensus 2 ~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~~~~~----~~~~~~~~~~l~~l~a~i~E~lRl~p~~~~~~~r~ 77 (204)
+++||+|||+++++|++++|++||++|+|+++|++++.+.. ..++.++++++||++|||+|+||++|+++.. .|.
T Consensus 295 ~~~Ag~dtta~~l~~~l~~L~~~P~~~~kl~~E~~~v~~~~~~~~~~~~~~~l~~lpyl~a~i~E~lRl~p~~~~~-~R~ 373 (490)
T PLN02302 295 YLNAGHESSGHLTMWATIFLQEHPEVLQKAKAEQEEIAKKRPPGQKGLTLKDVRKMEYLSQVIDETLRLINISLTV-FRE 373 (490)
T ss_pred HHHhhHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHhcChHHHHHHHHHHHhCCCcccc-hhc
Confidence 68999999999999999999999999999999999987642 1267889999999999999999999999886 688
Q ss_pred cCCCceeccEEeCCCCEEEEeehhhccCCCCCCCCCCCCCCccCCCCCCCCCCCCceeeccCCCCCCccHHHHHHHHHHH
Q 036473 78 SMEDCTVNGFHIPKKSRVIVNAWAIGRDPKAWNDPEKFFPERFVGSSVDVRGRDFQLLPFGSGRRACPGMQLALTVVKQV 157 (204)
Q Consensus 78 ~~~~~~~~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~pFg~G~r~C~G~~lA~~~~~~~ 157 (204)
+.+|++++|+.||+|+.|.++.+++||||++|+||++|+|+||++.. ..+..++|||.|+|.|+|++||.+|++++
T Consensus 374 ~~~d~~~~g~~Ip~Gt~v~~~~~~~~rd~~~~~dP~~F~PeR~~~~~----~~~~~~~pFG~G~r~C~G~~lA~~e~~~~ 449 (490)
T PLN02302 374 AKTDVEVNGYTIPKGWKVLAWFRQVHMDPEVYPNPKEFDPSRWDNYT----PKAGTFLPFGLGSRLCPGNDLAKLEISIF 449 (490)
T ss_pred ccCCEeECCEEECCCCEEEeeHHHhcCCcccCCCccccChhhcCCCC----CCCCCccCCCCCCcCCCcHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999643 23457999999999999999999999999
Q ss_pred HHHHhhhceeecCCCCCCCcCCcccccceeeecCCceeEEeeecCC
Q 036473 158 TAQLVHCFDWELPEGMLPTELDMTEEFGLVTYRAKHLLAVPSYRLS 203 (204)
Q Consensus 158 la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 203 (204)
++.|+++|+|++.++. .+. .+...+.|..++.+++++|.+
T Consensus 450 la~ll~~f~~~~~~~~----~~~--~~~~~~~p~~~~~~~~~~~~~ 489 (490)
T PLN02302 450 LHHFLLGYRLERLNPG----CKV--MYLPHPRPKDNCLARITKVAS 489 (490)
T ss_pred HHHHHhcCeeEEcCCC----Ccc--eeCCCCCCCCCceEEEEeccC
Confidence 9999999999986541 122 122336788899999998875
No 29
>PLN02987 Cytochrome P450, family 90, subfamily A
Probab=100.00 E-value=2.2e-46 Score=318.61 Aligned_cols=192 Identities=28% Similarity=0.398 Sum_probs=169.4
Q ss_pred cccccccchHHHHHHHHHHHHhChHHHHHHHHHHHHHhCC---CCCCCccccCCChhHHHHHHhhcCCCCCCCCCCcccc
Q 036473 2 MLAGAMDTSPTVVEWALSELIKHPAVMKKLQRELENIVGL---KRMVEESDLENLEYLDMVVKETLRLHPVAPLMAPHES 78 (204)
Q Consensus 2 ~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~~~~---~~~~~~~~~~~l~~l~a~i~E~lRl~p~~~~~~~r~~ 78 (204)
+++||+|||+++++|++++|++||++|+++++|++++.+. ....+.+++.++||++||++|+||++|+++.. .|.+
T Consensus 275 l~~Ag~~tta~~l~~~l~~L~~~P~~~~~l~~E~~~~~~~~~~~~~~~~~~l~~lpyl~a~i~EtLRl~p~~~~~-~R~~ 353 (472)
T PLN02987 275 LLVAGYETTSTIMTLAVKFLTETPLALAQLKEEHEKIRAMKSDSYSLEWSDYKSMPFTQCVVNETLRVANIIGGI-FRRA 353 (472)
T ss_pred HHHhccchHHHHHHHHHHHHHhChHHHHHHHHHHHHHHcccCCCCCCCHHHHhcChHHHHHHHHHHHccCCcCCc-cccC
Confidence 6799999999999999999999999999999999998752 34467788999999999999999999999865 7989
Q ss_pred CCCceeccEEeCCCCEEEEeehhhccCCCCCCCCCCCCCCccCCCCCCCCCCCCceeeccCCCCCCccHHHHHHHHHHHH
Q 036473 79 MEDCTVNGFHIPKKSRVIVNAWAIGRDPKAWNDPEKFFPERFVGSSVDVRGRDFQLLPFGSGRRACPGMQLALTVVKQVT 158 (204)
Q Consensus 79 ~~~~~~~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~pFg~G~r~C~G~~lA~~~~~~~l 158 (204)
.+|++++|+.||+|+.|.++.+.+|+||++|+||++|+||||+++... ......++|||.|+|.|+|++||.+|+++++
T Consensus 354 ~~d~~~~G~~ip~Gt~v~~~~~~~~~d~~~~~~p~~F~PeRfl~~~~~-~~~~~~~l~FG~G~r~C~G~~lA~~e~~~~l 432 (472)
T PLN02987 354 MTDIEVKGYTIPKGWKVFASFRAVHLDHEYFKDARTFNPWRWQSNSGT-TVPSNVFTPFGGGPRLCPGYELARVALSVFL 432 (472)
T ss_pred CCCeeECCEEECCCCEEEEehHHhhCCcccCCCccccCcccCCCCCCC-CCCCcceECCCCCCcCCCcHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999975432 1234579999999999999999999999999
Q ss_pred HHHhhhceeecCCCCCCCcCCcccccceeeecCCceeEEeeecC
Q 036473 159 AQLVHCFDWELPEGMLPTELDMTEEFGLVTYRAKHLLAVPSYRL 202 (204)
Q Consensus 159 a~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 202 (204)
+.|+++|+|++.++. .. ....++.|..++.+++++|.
T Consensus 433 a~ll~~f~~~~~~~~---~~----~~~~~~~p~~~~~~~~~~r~ 469 (472)
T PLN02987 433 HRLVTRFSWVPAEQD---KL----VFFPTTRTQKRYPINVKRRD 469 (472)
T ss_pred HHHHhceEEEECCCC---ce----eecccccCCCCceEEEEecc
Confidence 999999999987652 21 22447788889999999884
No 30
>KOG0684 consensus Cytochrome P450 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3e-46 Score=303.20 Aligned_cols=196 Identities=33% Similarity=0.576 Sum_probs=175.9
Q ss_pred cccccccchHHHHHHHHHHHHhChHHHHHHHHHHHHHhCCCCC-CCccccCCChhHHHHHHhhcCCCCCCCCCCccccCC
Q 036473 2 MLAGAMDTSPTVVEWALSELIKHPAVMKKLQRELENIVGLKRM-VEESDLENLEYLDMVVKETLRLHPVAPLMAPHESME 80 (204)
Q Consensus 2 ~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~~~~~~~-~~~~~~~~l~~l~a~i~E~lRl~p~~~~~~~r~~~~ 80 (204)
+++||..||+.+..|++++|++||++++.+++|+.++++++.. ++.+.+++||.|+.||+|||||+||.+.+ .|.+.+
T Consensus 281 ~LwA~Q~ns~ptsfW~l~yLl~~Pe~~~a~~eE~k~vlG~~~~~l~~d~L~~lplL~~~IkEtLRL~~p~~~~-~R~v~~ 359 (486)
T KOG0684|consen 281 LLWAGQHNSSPTSFWTLAYLLRHPEAQKAVREEQKRVLGEKKEKLTYDQLKDLPLLDSCIKETLRLHPPAHSL-MRKVHE 359 (486)
T ss_pred HHHhccccccHHHHHHHHHHhhCHHHHHHHHHHHHHHhhccCCCCCHHHHhcchHHHHHHHHHHhcCCchhhH-HHhhcc
Confidence 4799999999999999999999999999999999999988655 89999999999999999999999988877 799999
Q ss_pred Cceecc----EEeCCCCEEEEeehhhccCCCCCCCCCCCCCCccCCCCCCCC----CCCCceeeccCCCCCCccHHHHHH
Q 036473 81 DCTVNG----FHIPKKSRVIVNAWAIGRDPKAWNDPEKFFPERFVGSSVDVR----GRDFQLLPFGSGRRACPGMQLALT 152 (204)
Q Consensus 81 ~~~~~g----~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~~~----~~~~~~~pFg~G~r~C~G~~lA~~ 152 (204)
|.++.+ |.||+|..|.+++..+|+||++|+||+.|+|+||++++++.+ .-++.+||||+|.|.|||+.||.+
T Consensus 360 D~tv~~~~~~Y~Ip~G~~valsP~~~hr~peif~dp~~Fk~dRf~~~~~~~~k~g~kl~yy~mpfGaGr~~CpGr~FA~~ 439 (486)
T KOG0684|consen 360 DLTVPGSDGEYVIPKGDIVALSPFLLHRDPEIFPDPEDFKPDRFLKDNGESKKNGEKLDYYYMPFGAGRHRCPGRSFAYL 439 (486)
T ss_pred ceeeccCCcceecCCCCEEEeccccccCCccccCChhhCChhhccCCCcccccccccccccccccCCCcCCCCchHHHHH
Confidence 999966 999999999999999999999999999999999997765431 224457999999999999999999
Q ss_pred HHHHHHHHHhhhceeecCCCCCCCcCCcccccceeeecCCceeEEeeecC
Q 036473 153 VVKQVTAQLVHCFDWELPEGMLPTELDMTEEFGLVTYRAKHLLAVPSYRL 202 (204)
Q Consensus 153 ~~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 202 (204)
|+|.++..+|++||+++.+|.. .+.|.. ..++.|..++.++.+.|+
T Consensus 440 eIk~~~~l~L~~fdleLid~~~-P~~d~s---~~v~~P~g~v~irYK~R~ 485 (486)
T KOG0684|consen 440 EIKQFISLLLRHFDLELIDGPF-PEVDYS---RMVMQPEGDVRIRYKRRP 485 (486)
T ss_pred HHHHHHHHHHHHcceeecCCCC-CCCCHH---HhhcCCCCCceEEEeecC
Confidence 9999999999999999999733 345544 337789999999999986
No 31
>COG2124 CypX Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.2e-40 Score=277.30 Aligned_cols=144 Identities=38% Similarity=0.635 Sum_probs=137.1
Q ss_pred cccccccchHHHHHHHHHHHHhChHHHHHHHHHHHHHhCCCCCCCccccCCChhHHHHHHhhcCCCCCCCCCCccccCCC
Q 036473 2 MLAGAMDTSPTVVEWALSELIKHPAVMKKLQRELENIVGLKRMVEESDLENLEYLDMVVKETLRLHPVAPLMAPHESMED 81 (204)
Q Consensus 2 ~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~~~~~~~~~~~~~~~l~~l~a~i~E~lRl~p~~~~~~~r~~~~~ 81 (204)
+++||+|||+++++|+++.|++||++++++++|.+. +|++++|+|+||++|+++. .+|.+.+|
T Consensus 244 ll~AGheTTa~~l~~a~~~L~~~P~~~~~l~~e~~~----------------~~~~~~v~E~LR~~ppv~~-~~R~~~~d 306 (411)
T COG2124 244 LLVAGHETTANALAWALYALLRHPDQLAKLRAEPDR----------------PLLEAVVEETLRLYPPVPL-ARRVATED 306 (411)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHCchHHHHHHhCcch----------------HHHHHHHHHHHHhCCchhc-cceeccCC
Confidence 578999999999999999999999999999998764 7899999999999999999 59999999
Q ss_pred ceeccEEeCCCCEEEEeehhhccCCCCCCCCCCCCCCccCCCCCCCCCCCCceeeccCCCCCCccHHHHHHHHHHHHHHH
Q 036473 82 CTVNGFHIPKKSRVIVNAWAIGRDPKAWNDPEKFFPERFVGSSVDVRGRDFQLLPFGSGRRACPGMQLALTVVKQVTAQL 161 (204)
Q Consensus 82 ~~~~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~pFg~G~r~C~G~~lA~~~~~~~la~l 161 (204)
++++|+.||+|+.|.++++++||||++|++|++|+|+||. ..++|||+|+|.|+|..||++|++++++.|
T Consensus 307 ~~igg~~Ip~G~~V~~~~~~anrDp~~f~~P~~F~p~R~~----------~~~l~FG~G~H~ClG~~lA~~E~~~~l~~l 376 (411)
T COG2124 307 VELGGYRIPAGTVVLLSIGAANRDPEVFPDPDEFDPERFN----------NAHLPFGGGPHRCLGAALARLELKVALAEL 376 (411)
T ss_pred EeeCCEEeCCCCEEEecHhhhcCChhhCCChhhcCCCCCC----------CCCcCCCCCCccccCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999996 479999999999999999999999999999
Q ss_pred hhhceeecCCC
Q 036473 162 VHCFDWELPEG 172 (204)
Q Consensus 162 l~~f~~~~~~~ 172 (204)
+++|++....+
T Consensus 377 l~r~~~~~~~~ 387 (411)
T COG2124 377 LRRFPLLLLAE 387 (411)
T ss_pred HHhCchhhcCC
Confidence 99999987664
No 32
>PLN02648 allene oxide synthase
Probab=100.00 E-value=7e-40 Score=278.34 Aligned_cols=165 Identities=24% Similarity=0.381 Sum_probs=142.8
Q ss_pred ccccchHHHHHHHHHHHHhChH-HHHHHHHHHHHHhCC-CCCCCccccCCChhHHHHHHhhcCCCCCCCCCCccccCCCc
Q 036473 5 GAMDTSPTVVEWALSELIKHPA-VMKKLQRELENIVGL-KRMVEESDLENLEYLDMVVKETLRLHPVAPLMAPHESMEDC 82 (204)
Q Consensus 5 ag~~tt~~~l~~~l~~L~~~p~-~~~~l~~Ei~~~~~~-~~~~~~~~~~~l~~l~a~i~E~lRl~p~~~~~~~r~~~~~~ 82 (204)
++++|++++++|++++|++||+ +|++|++|++.+.+. ++.++.+++++|||+++||+|+||++|+++.. .|.+.+|+
T Consensus 283 ~t~~~~~~~l~~~l~~L~~~p~~v~~klr~Ei~~~~~~~~~~~t~~~l~~l~yl~avi~EtLRl~p~v~~~-~r~a~~d~ 361 (480)
T PLN02648 283 NAFGGFKIFFPALLKWVGRAGEELQARLAEEVRSAVKAGGGGVTFAALEKMPLVKSVVYEALRIEPPVPFQ-YGRAREDF 361 (480)
T ss_pred HhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCCCHHHHhcCHHHHHHHHHHHhhcCCcccc-cceecCCE
Confidence 4566666799999999999995 999999999999863 34678889999999999999999999999987 56688999
Q ss_pred eec----cEEeCCCCEEEEeehhhccCCCCCCCCCCCCCCccCCCCCCCCCCCCceeec---------cCCCCCCccHHH
Q 036473 83 TVN----GFHIPKKSRVIVNAWAIGRDPKAWNDPEKFFPERFVGSSVDVRGRDFQLLPF---------GSGRRACPGMQL 149 (204)
Q Consensus 83 ~~~----g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~pF---------g~G~r~C~G~~l 149 (204)
+++ ||.||||+.|+++.+.+|+||++|+||++|+|+||++++... ...+++| |+|+|.|+|++|
T Consensus 362 ~l~~~~~g~~IpkG~~V~~~~~~~hrdp~~~~dP~~F~PeRf~~~~~~~---~~~~~~f~~g~~~~~~G~G~R~C~G~~~ 438 (480)
T PLN02648 362 VIESHDAAFEIKKGEMLFGYQPLVTRDPKVFDRPEEFVPDRFMGEEGEK---LLKYVFWSNGRETESPTVGNKQCAGKDF 438 (480)
T ss_pred EEecCCceEEECCCCEEEEChHHHhCCcccCCCcceeCCCCCCCCCccc---cccccccCCCcccCCCCCCCccCccHHH
Confidence 996 799999999999999999999999999999999998653221 1234444 677899999999
Q ss_pred HHHHHHHHHHHHhhhce-eecCCCC
Q 036473 150 ALTVVKQVTAQLVHCFD-WELPEGM 173 (204)
Q Consensus 150 A~~~~~~~la~ll~~f~-~~~~~~~ 173 (204)
|++|++++++.|+++|+ |++.++.
T Consensus 439 A~~e~~~~la~Ll~~f~~~~l~~~~ 463 (480)
T PLN02648 439 VVLVARLFVAELFLRYDSFEIEVDT 463 (480)
T ss_pred HHHHHHHHHHHHHHHhCEEeecCCc
Confidence 99999999999999998 9987763
No 33
>PF05952 ComX: Bacillus competence pheromone ComX; InterPro: IPR009233 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. Natural genetic competence in Bacillus subtilis is controlled by quorum-sensing (QS). The ComP- ComA two-component system detects the signalling molecule ComX, and this signal is transduced by a conserved phosphotransfer mechanism. ComX is synthesised as an inactive precursor and is then cleaved and modified by ComQ before export to the extracellular environment [].
Probab=60.30 E-value=10 Score=22.56 Aligned_cols=24 Identities=21% Similarity=0.446 Sum_probs=18.3
Q ss_pred HHHHHHHhChHHHHHHHHHHHHHh
Q 036473 16 WALSELIKHPAVMKKLQRELENIV 39 (204)
Q Consensus 16 ~~l~~L~~~p~~~~~l~~Ei~~~~ 39 (204)
-.+.+|.+||++.++|.+.=.+++
T Consensus 4 ~iV~YLv~nPevl~kl~~g~asLI 27 (57)
T PF05952_consen 4 EIVNYLVQNPEVLEKLKEGEASLI 27 (57)
T ss_pred HHHHHHHHChHHHHHHHcCCeeEe
Confidence 467899999999999987444333
No 34
>PF09201 SRX: SRX; InterPro: IPR015284 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. This entry represents a homologue of the alpha subunit of the SR receptor. Members of this entry consist of a central six-stranded anti-parallel beta-sheet sandwiched by helix alpha1 on one side and helices alpha2-alpha4 on the other. They interact with the small GTPase SR-beta, forming a complex that matches a class of small G protein-effector complexes, including Rap-Raf, Ras-PI3K(gamma), Ras-RalGDS, and Arl2-PDE(delta) []. ; PDB: 1NRJ_A.
Probab=51.96 E-value=12 Score=26.55 Aligned_cols=22 Identities=18% Similarity=0.445 Sum_probs=16.3
Q ss_pred CCccHHHHHHHHHHHHHHHhhh
Q 036473 143 ACPGMQLALTVVKQVTAQLVHC 164 (204)
Q Consensus 143 ~C~G~~lA~~~~~~~la~ll~~ 164 (204)
+|.|++||..++-.++..|+..
T Consensus 19 N~~gKKFsE~QiN~FIs~lIts 40 (148)
T PF09201_consen 19 NCLGKKFSETQINAFISHLITS 40 (148)
T ss_dssp ETTS----HHHHHHHHHHHHHS
T ss_pred cccchHHHHHHHHHHHHHHhcC
Confidence 7999999999999999999863
No 35
>PF12508 DUF3714: Protein of unknown function (DUF3714) ; InterPro: IPR022187 Proteins in this entry are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage.
Probab=44.88 E-value=21 Score=27.16 Aligned_cols=43 Identities=21% Similarity=0.230 Sum_probs=30.9
Q ss_pred ChhHHHHHHhhcCCCCCCCCCCccccCCCceeccEEeCCCCEEEE
Q 036473 53 LEYLDMVVKETLRLHPVAPLMAPHESMEDCTVNGFHIPKKSRVIV 97 (204)
Q Consensus 53 l~~l~a~i~E~lRl~p~~~~~~~r~~~~~~~~~g~~ip~g~~v~~ 97 (204)
-....|||.|+.-+..... + .-...+|+.++|..||+|+.+.-
T Consensus 52 ~n~I~A~V~~~qtv~~Gs~-v-rlRLle~i~i~g~~IPkgt~l~G 94 (200)
T PF12508_consen 52 KNTIRAVVDGTQTVVDGSR-V-RLRLLEDIQIGGILIPKGTYLYG 94 (200)
T ss_pred CCeEEEEEecceEEeCCCE-E-EEEEcCceEECCEEeCCCCEEEE
Confidence 4567889999987754332 2 22347889999999999987654
No 36
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=44.81 E-value=7.6 Score=28.75 Aligned_cols=36 Identities=28% Similarity=0.525 Sum_probs=25.0
Q ss_pred CCCCCCccCCCCCCCCCCCCceeeccCCCCCCccHH
Q 036473 113 EKFFPERFVGSSVDVRGRDFQLLPFGSGRRACPGMQ 148 (204)
Q Consensus 113 ~~F~P~R~l~~~~~~~~~~~~~~pFg~G~r~C~G~~ 148 (204)
.+|+|++|-.--.....++.+.+-|..|.-.|-|-.
T Consensus 35 aeYnP~qFpGlv~Rl~ePk~a~LIF~SGK~VcTGaK 70 (185)
T COG2101 35 AEYNPEQFPGLVYRLEEPKTAALIFRSGKVVCTGAK 70 (185)
T ss_pred CccCHhHCCeeEEEecCCcceEEEEecCcEEEeccC
Confidence 468899884321122234567999999999999964
No 37
>PF11138 DUF2911: Protein of unknown function (DUF2911); InterPro: IPR021314 This bacterial family of proteins has no known function.
Probab=44.78 E-value=35 Score=24.56 Aligned_cols=35 Identities=14% Similarity=0.311 Sum_probs=24.2
Q ss_pred ccCCCceeccEEeCCCCEEEEeehh-------hccCCCCCCC
Q 036473 77 ESMEDCTVNGFHIPKKSRVIVNAWA-------IGRDPKAWND 111 (204)
Q Consensus 77 ~~~~~~~~~g~~ip~g~~v~~~~~~-------~~~d~~~~~~ 111 (204)
...+|+.++|..||+|+.-++.... +|++...|..
T Consensus 51 ~f~~dv~igGk~l~AG~Ysl~tiP~~~~WtvI~n~~~~~wG~ 92 (145)
T PF11138_consen 51 TFSKDVTIGGKKLKAGTYSLFTIPGEDEWTVIFNKDTDQWGA 92 (145)
T ss_pred EECCCeEECCEEcCCeeEEEEEecCCCeEEEEEECCCCccCc
Confidence 3467899999999999877665432 3455555543
No 38
>PF15300 INT_SG_DDX_CT_C: INTS6/SAGE1/DDX26B/CT45 C-terminus
Probab=43.55 E-value=11 Score=23.19 Aligned_cols=15 Identities=27% Similarity=0.738 Sum_probs=12.4
Q ss_pred ChhHHHHHHhhcCCC
Q 036473 53 LEYLDMVVKETLRLH 67 (204)
Q Consensus 53 l~~l~a~i~E~lRl~ 67 (204)
..+++.+|+|++|+.
T Consensus 40 ~~fv~~~IkEA~RFk 54 (65)
T PF15300_consen 40 KQFVEMIIKEAARFK 54 (65)
T ss_pred HHHHHHHHHHHHHHH
Confidence 357899999999974
No 39
>KOG3506 consensus 40S ribosomal protein S29 [Translation, ribosomal structure and biogenesis]
Probab=40.56 E-value=12 Score=21.89 Aligned_cols=10 Identities=50% Similarity=1.198 Sum_probs=8.6
Q ss_pred eccCCCCCCc
Q 036473 136 PFGSGRRACP 145 (204)
Q Consensus 136 pFg~G~r~C~ 145 (204)
+||-|.|.|-
T Consensus 13 kfg~GsrsC~ 22 (56)
T KOG3506|consen 13 KFGQGSRSCR 22 (56)
T ss_pred ccCCCCccee
Confidence 6999999984
No 40
>PRK06789 flagellar motor switch protein; Validated
Probab=38.46 E-value=37 Score=21.40 Aligned_cols=39 Identities=8% Similarity=0.054 Sum_probs=29.8
Q ss_pred HHhhcCCCCCCCCCCccccCCC--ceeccEEeCCCCEEEEe
Q 036473 60 VKETLRLHPVAPLMAPHESMED--CTVNGFHIPKKSRVIVN 98 (204)
Q Consensus 60 i~E~lRl~p~~~~~~~r~~~~~--~~~~g~~ip~g~~v~~~ 98 (204)
++|.+.+.+..-....+.+.++ +.++|..|.+|..|.++
T Consensus 22 i~dll~L~~Gsvi~Ldk~~~epvdI~vNg~lia~GEvVvv~ 62 (74)
T PRK06789 22 IEDLLHITKGTLYRLENSTKNTVRLMLENEEIGTGKILTKN 62 (74)
T ss_pred HHHHhcCCCCCEEEeCCcCCCCEEEEECCEEEeEEeEEEEC
Confidence 7888999877665556666555 45589999999988775
No 41
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=36.25 E-value=54 Score=21.55 Aligned_cols=27 Identities=19% Similarity=0.410 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhChHHHHHHHHHHHHH
Q 036473 12 TVVEWALSELIKHPAVMKKLQRELENI 38 (204)
Q Consensus 12 ~~l~~~l~~L~~~p~~~~~l~~Ei~~~ 38 (204)
.++.|.++..-..|+..+.|.+||+++
T Consensus 54 ~~lgy~v~tFnDcpeA~~eL~~eI~eA 80 (91)
T PF08285_consen 54 FTLGYGVATFNDCPEAAKELQKEIKEA 80 (91)
T ss_pred HHHHHhhhccCCCHHHHHHHHHHHHHH
Confidence 456677777777899999999999876
No 42
>PF14483 Cut8_M: Cut8 dimerisation domain; PDB: 3Q5W_A 3Q5X_A.
Probab=34.48 E-value=73 Score=17.17 Aligned_cols=22 Identities=18% Similarity=0.455 Sum_probs=15.7
Q ss_pred HHHHHHHHHHH-hChHHHHHHHH
Q 036473 12 TVVEWALSELI-KHPAVMKKLQR 33 (204)
Q Consensus 12 ~~l~~~l~~L~-~~p~~~~~l~~ 33 (204)
..+...+..++ +||++++.++.
T Consensus 13 ~qL~~lL~~l~~~HPei~~~i~~ 35 (38)
T PF14483_consen 13 DQLQSLLQSLCERHPEIQQEIRS 35 (38)
T ss_dssp HHHHHHHHHHHHHSTHHHHHHHT
T ss_pred HHHHHHHHHHHHhChhHHHHHHh
Confidence 34556666666 79999988764
No 43
>PF11227 DUF3025: Protein of unknown function (DUF3025); InterPro: IPR021390 Some members in this bacterial family of proteins are annotated as transmembrane proteins however this cannot be confirmed. Currently this family of proteins has no known function.
Probab=33.63 E-value=24 Score=27.12 Aligned_cols=19 Identities=32% Similarity=0.602 Sum_probs=16.9
Q ss_pred hhccCCCCCCCCCCCCCCc
Q 036473 101 AIGRDPKAWNDPEKFFPER 119 (204)
Q Consensus 101 ~~~~d~~~~~~p~~F~P~R 119 (204)
.-|.|+.+|.|...|+|.|
T Consensus 193 ~~n~~~~FY~d~~~FRp~R 211 (212)
T PF11227_consen 193 PDNEDPAFYDDTDVFRPGR 211 (212)
T ss_pred CCCCCcccccCccccCCCC
Confidence 3488999999999999988
No 44
>PF14129 DUF4296: Domain of unknown function (DUF4296)
Probab=33.54 E-value=1.3e+02 Score=19.30 Aligned_cols=36 Identities=6% Similarity=0.082 Sum_probs=28.7
Q ss_pred cccccchHHHHHHHHHHHHhChHHHHHHHHHHHHHh
Q 036473 4 AGAMDTSPTVVEWALSELIKHPAVMKKLQRELENIV 39 (204)
Q Consensus 4 ~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~~ 39 (204)
+--++.++....-.+.+-++||+..+++.+.+..-+
T Consensus 43 ~kKy~Ids~~f~~S~~YY~~~p~~~~~Iy~~V~~rL 78 (87)
T PF14129_consen 43 FKKYGIDSAQFDSSMVYYSRNPEEYEKIYDKVIERL 78 (87)
T ss_pred HHHcCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 344667777888888888999999999999887644
No 45
>PF07849 DUF1641: Protein of unknown function (DUF1641); InterPro: IPR012440 Archaeal and bacterial hypothetical proteins are found in this family, with the region in question being approximately 40 residues long.
Probab=33.53 E-value=57 Score=17.92 Aligned_cols=18 Identities=22% Similarity=0.420 Sum_probs=15.1
Q ss_pred HHHHHHHHhChHHHHHHH
Q 036473 15 EWALSELIKHPAVMKKLQ 32 (204)
Q Consensus 15 ~~~l~~L~~~p~~~~~l~ 32 (204)
.|.+..++++||+|.-|.
T Consensus 13 l~gl~~~l~DpdvqrgL~ 30 (42)
T PF07849_consen 13 LFGLLRALRDPDVQRGLG 30 (42)
T ss_pred HHHHHHHHcCHHHHHHHH
Confidence 477888999999998775
No 46
>PF12444 Sox_N: Sox developmental protein N terminal ; InterPro: IPR022151 This domain family is found in eukaryotes, and is typically between 69 and 88 amino acids in length. The family is found in association with PF00505 from PFAM. There are two conserved sequence motifs: YDW and PVR. This family contains Sox8, Sox9 and Sox10 proteins which have structural similarity. Sox proteins are involved in developmental processes.
Probab=33.49 E-value=28 Score=22.50 Aligned_cols=20 Identities=20% Similarity=0.640 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhhhceeecCC
Q 036473 152 TVVKQVTAQLVHCFDWELPE 171 (204)
Q Consensus 152 ~~~~~~la~ll~~f~~~~~~ 171 (204)
.-|+-++..+|+-|||.|++
T Consensus 60 ~~IrdAVsqVLkGYDWtLVP 79 (84)
T PF12444_consen 60 VCIRDAVSQVLKGYDWTLVP 79 (84)
T ss_pred HHHHHHHHHHhccCCceeee
Confidence 34677899999999999875
No 47
>PF14824 Sirohm_synth_M: Sirohaem biosynthesis protein central; PDB: 1KYQ_B.
Probab=30.29 E-value=73 Score=16.25 Aligned_cols=15 Identities=20% Similarity=0.636 Sum_probs=11.5
Q ss_pred ChHHHHHHHHHHHHH
Q 036473 24 HPAVMKKLQRELENI 38 (204)
Q Consensus 24 ~p~~~~~l~~Ei~~~ 38 (204)
.|.+-.++|+||++.
T Consensus 15 sP~la~~iR~~ie~~ 29 (30)
T PF14824_consen 15 SPRLARLIRKEIERL 29 (30)
T ss_dssp -HHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHh
Confidence 578888999998764
No 48
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=29.19 E-value=14 Score=27.45 Aligned_cols=35 Identities=26% Similarity=0.559 Sum_probs=24.1
Q ss_pred CCCCCCccCCCCCCCCCCCCceeeccCCCCCCccH
Q 036473 113 EKFFPERFVGSSVDVRGRDFQLLPFGSGRRACPGM 147 (204)
Q Consensus 113 ~~F~P~R~l~~~~~~~~~~~~~~pFg~G~r~C~G~ 147 (204)
-+|+|+||-.--.....++...+-|+.|.=.|.|-
T Consensus 29 ~eY~P~~fpgli~Rl~~Pk~t~lIF~SGKiv~tGa 63 (174)
T cd04518 29 AEYNPDQFPGLVYRLEDPKIAALIFRSGKMVCTGA 63 (174)
T ss_pred cEECCCcCcEEEEEccCCcEEEEEECCCeEEEEcc
Confidence 47889988432212223455788999999999986
No 49
>PF14550 Peptidase_U35_2: Putative phage protease XkdF
Probab=28.81 E-value=45 Score=23.24 Aligned_cols=30 Identities=30% Similarity=0.441 Sum_probs=20.8
Q ss_pred ccCCCceeccEEeCCCCEEEEeehhhccCCCCC
Q 036473 77 ESMEDCTVNGFHIPKKSRVIVNAWAIGRDPKAW 109 (204)
Q Consensus 77 ~~~~~~~~~g~~ip~g~~v~~~~~~~~~d~~~~ 109 (204)
+...|.+++|..||+|+.|+.--. .|+++|
T Consensus 72 I~~~d~~~~g~~i~~GtWv~~~k~---~ddelW 101 (122)
T PF14550_consen 72 IAPEDMEIGGETIPKGTWVVGVKI---TDDELW 101 (122)
T ss_pred ecCCCcccCCeeecceEEEEEEEe---cCHHHH
Confidence 345688889999999998854322 344555
No 50
>COG0851 MinE Septum formation topological specificity factor [Cell division and chromosome partitioning]
Probab=28.25 E-value=65 Score=21.01 Aligned_cols=17 Identities=18% Similarity=0.567 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHHHHhCC
Q 036473 25 PAVMKKLQRELENIVGL 41 (204)
Q Consensus 25 p~~~~~l~~Ei~~~~~~ 41 (204)
|++.+.+|+||.+++..
T Consensus 36 pd~l~~Lr~eIl~VI~K 52 (88)
T COG0851 36 PDYLEQLRKEILEVISK 52 (88)
T ss_pred cchHHHHHHHHHHHHHH
Confidence 88899999999888653
No 51
>PHA03162 hypothetical protein; Provisional
Probab=27.35 E-value=38 Score=23.84 Aligned_cols=24 Identities=25% Similarity=0.477 Sum_probs=18.8
Q ss_pred cCCCCCCccHHHHHHHHHHHHHHH
Q 036473 138 GSGRRACPGMQLALTVVKQVTAQL 161 (204)
Q Consensus 138 g~G~r~C~G~~lA~~~~~~~la~l 161 (204)
++|.+.||++...+-++..=|+.|
T Consensus 2 ~~~~k~~pk~~~tmEeLaaeL~kL 25 (135)
T PHA03162 2 AGGSKKCPKAQPTMEDLAAEIAKL 25 (135)
T ss_pred CCCcCCCCccCCCHHHHHHHHHHH
Confidence 468999999998888877666554
No 52
>PF10796 Anti-adapt_IraP: Sigma-S stabilisation anti-adaptor protein ; InterPro: IPR019732 This entry is conserved in Enterobacteriaceae. It is one of a series of proteins, expressed by these bacteria in response to stress, that help to regulate Sigma-S, the stationary phase sigma factor of Escherichia coli and Salmonella. IraP is essential for Sigma-S stabilisation in some but not all starvation conditions []. ; GO: 0005737 cytoplasm
Probab=26.81 E-value=1.1e+02 Score=20.03 Aligned_cols=60 Identities=18% Similarity=0.191 Sum_probs=35.4
Q ss_pred ccccchHHHHHHHHHHHHhChHHHHHHHHHHHHHhCCCCCCCccccC-CChhHHHHHHhhcCC
Q 036473 5 GAMDTSPTVVEWALSELIKHPAVMKKLQRELENIVGLKRMVEESDLE-NLEYLDMVVKETLRL 66 (204)
Q Consensus 5 ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~~~~~~~~~~~~~~-~l~~l~a~i~E~lRl 66 (204)
|-+|+-..+++-++..+ .++-++.+.+-|+.+......-...... ....|...+++-+++
T Consensus 24 AqVEAleivitALL~~l--~~~~~~~~i~~I~~Ai~~a~~~~~~~~~sd~eLL~~~~~~Ll~~ 84 (87)
T PF10796_consen 24 AQVEALEIVITALLRTL--DQGGRQEMIESIEKAIEDASPSSDVPLKSDAELLLQYVKKLLRH 84 (87)
T ss_pred HHHHHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHhcccCCccchHHHHHHHHHHHHHHhc
Confidence 33455556666666666 5666778888887776543222222222 345677777777765
No 53
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=26.50 E-value=1.2e+02 Score=25.06 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=17.0
Q ss_pred CCceeeccCCCCCCccHHHHHHHHHHHH
Q 036473 131 DFQLLPFGSGRRACPGMQLALTVVKQVT 158 (204)
Q Consensus 131 ~~~~~pFg~G~r~C~G~~lA~~~~~~~l 158 (204)
+++++-||-+ +-.|+++|. |+|.++
T Consensus 327 pYs~l~~~~p--ms~GrRIA~-EIk~A~ 351 (361)
T COG1759 327 PYSNLYWGEP--MSTGRRIAR-EIKEAI 351 (361)
T ss_pred cchhhhcCCC--cchhhHHHH-HHHHHH
Confidence 4455556544 678999997 887654
No 54
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many
Probab=25.39 E-value=55 Score=24.26 Aligned_cols=56 Identities=21% Similarity=0.392 Sum_probs=32.7
Q ss_pred CCCCCCccCCCCCCCCCCCCceeeccCCCCCCccH---HHHHHHHHHHHHHHhhhceeec
Q 036473 113 EKFFPERFVGSSVDVRGRDFQLLPFGSGRRACPGM---QLALTVVKQVTAQLVHCFDWEL 169 (204)
Q Consensus 113 ~~F~P~R~l~~~~~~~~~~~~~~pFg~G~r~C~G~---~lA~~~~~~~la~ll~~f~~~~ 169 (204)
-+|+|+||-.--.....++-..+-|+.|+=.|.|- .=|..-++. ++.+|+++.+..
T Consensus 29 ~~YePe~fpgli~R~~~P~~t~lIf~sGKivitGaks~~~~~~a~~~-~~~~L~~~g~~~ 87 (174)
T cd00652 29 AEYNPKRFPGVIMRLREPKTTALIFSSGKMVITGAKSEEDAKLAARK-YARILQKLGFPV 87 (174)
T ss_pred cEECCCccceEEEEcCCCcEEEEEECCCEEEEEecCCHHHHHHHHHH-HHHHHHHcCCCc
Confidence 46888888432112222455788999999999983 233333333 344566665543
No 55
>PRK13467 F0F1 ATP synthase subunit C; Provisional
Probab=24.75 E-value=1.2e+02 Score=18.58 Aligned_cols=24 Identities=8% Similarity=0.191 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHhChHHHHHHHHH
Q 036473 11 PTVVEWALSELIKHPAVMKKLQRE 34 (204)
Q Consensus 11 ~~~l~~~l~~L~~~p~~~~~l~~E 34 (204)
..+.+..+--++++||.+.+++.-
T Consensus 20 G~v~~~a~e~iaRqPE~~~~i~~~ 43 (66)
T PRK13467 20 GFLMANLFKSAARQPEMIGQLRSL 43 (66)
T ss_pred HHHHHHHHHHHHcChhHHHhHHHH
Confidence 345566788899999999999864
No 56
>PF02663 FmdE: FmdE, Molybdenum formylmethanofuran dehydrogenase operon ; InterPro: IPR003814 Formylmethanofuran dehydrogenases (1.2.99.5 from EC) is found in methanogenic and sulphate-reducing archaea. The enzyme contains molybdenum or tungsten, a molybdopterin guanine dinuceotide cofactor (MGD) and iron-sulphur clusters []. It catalyses the reversible reduction of CO2 and methanofuran via N-carboxymethanofuran (carbamate) to N-formylmethanofuran, the first and second steps in methanogenesis from CO2 [, ]. This reaction is important for the reduction of CO2 to methane, in autotrophic CO2 fixation, and in CO2 formation from reduced C1 units []. The synthesis of formylmethanofuran is crucial for the energy metabolism of archaea. Methanogenic archaea derives the energy for autrophic growth from the reduction of CO2 with molecular hydrogen as the electron donor []. The process of methanogenesis consists of a series of reduction reactions at which the one-carbon unit derived from CO2 is bound to C1 carriers. There are two isoenzymes of formylmethanofuran dehydrogenase: a tungsten-containing isoenzyme (Fwd) and a molybdenum-containing isoenzyme (Fmd). The tungsten isoenzyme is constitutively transcribed, whereas transcription of the molybdenum operon is induced by molybdate []. The archaea Methanobacterium thermoautotrophicum contains a 4-subunit (FwdA, FwdB, FwdC, FwdD) tungsten formylmethanofuran dehydrogenase and a 3-subunit (FmdA, FmdB, FmdC) molybdenum formylmethanofuran dehydrogenase []. This entry represents subunit E of formylmethanofuran dehydrogenase enyzmes. The enzyme from Methanosarcina barkeri is a molybdenum iron-sulphur protein involved in methanogenesis. Subunit E protein is co-expressed with the enzyme but fails to co-purify and thus its function is unknown [].; PDB: 2GVI_A 3D00_A 2GLZ_A.
Probab=24.18 E-value=72 Score=22.19 Aligned_cols=21 Identities=29% Similarity=0.578 Sum_probs=16.2
Q ss_pred CCCccHHHHHHHHHHHHHHHh
Q 036473 142 RACPGMQLALTVVKQVTAQLV 162 (204)
Q Consensus 142 r~C~G~~lA~~~~~~~la~ll 162 (204)
|.|||.-++....+.++..|-
T Consensus 5 H~Cpgl~~G~r~~~~a~~~l~ 25 (131)
T PF02663_consen 5 HLCPGLALGYRMAKYALEELG 25 (131)
T ss_dssp S--HHHHHHHHHHHHHHHHHT
T ss_pred CcCccHHHHHHHHHHHHHHcC
Confidence 899999999999888777664
No 57
>PF10777 YlaC: Inner membrane protein YlaC; InterPro: IPR019713 The extracytoplasmic function (ECF) sigma factors are small regulatory proteins that are quite divergent in sequence relative to most other sigma factors. YlaC, regulated by YlaA, is important in oxidative stress resistance. It contributes to hydrogen peroxide resistance in Bacillus subtilis [].
Probab=22.74 E-value=43 Score=24.15 Aligned_cols=38 Identities=16% Similarity=0.372 Sum_probs=29.9
Q ss_pred HHHHHHHHhChHHHHHHHHHHHHHhCCCCCCCccccCC
Q 036473 15 EWALSELIKHPAVMKKLQRELENIVGLKRMVEESDLEN 52 (204)
Q Consensus 15 ~~~l~~L~~~p~~~~~l~~Ei~~~~~~~~~~~~~~~~~ 52 (204)
..++-.++++|++-+.+.++|++....++.++.-|.-.
T Consensus 112 ~~ai~~iL~~p~V~~~~K~~i~~i~~~Kgei~FYDVy~ 149 (155)
T PF10777_consen 112 DQAIDKILQSPQVPDEIKQGIQRIISTKGEISFYDVYS 149 (155)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhCCceeEEEeEE
Confidence 34677889999999999999999988777766555433
No 58
>TIGR01260 ATP_synt_c ATP synthase, F0 subunit c. This model describes the subunit c in F1/F0-ATP synthase, a membrane associated multisubunit complex found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. The functional role of subunit c, which is the part of F0 cluster, has been delineated in-vitro reconstitution experiments. Overall experimental proof exists that demonstrate the electrochemical gradient is converted into a rotational torque that leads to ATP synthesis.
Probab=22.34 E-value=1.4e+02 Score=17.71 Aligned_cols=24 Identities=13% Similarity=0.093 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHhChHHHHHHHHH
Q 036473 11 PTVVEWALSELIKHPAVMKKLQRE 34 (204)
Q Consensus 11 ~~~l~~~l~~L~~~p~~~~~l~~E 34 (204)
....+..+--+++||+...+++.-
T Consensus 10 G~i~~~a~~~iaRqPe~~~~l~~~ 33 (58)
T TIGR01260 10 GILGGKFLESAARQPELKPLLRTT 33 (58)
T ss_pred HHHHHHHHHHHHcChhHHHhHHHH
Confidence 345667788899999999998854
No 59
>PRK00394 transcription factor; Reviewed
Probab=21.95 E-value=25 Score=26.21 Aligned_cols=34 Identities=29% Similarity=0.588 Sum_probs=23.5
Q ss_pred CCCCCCccCCCCCCCCCCCCceeeccCCCCCCcc
Q 036473 113 EKFFPERFVGSSVDVRGRDFQLLPFGSGRRACPG 146 (204)
Q Consensus 113 ~~F~P~R~l~~~~~~~~~~~~~~pFg~G~r~C~G 146 (204)
-+|+|+||-.--.....+....+-|+.|.=.|.|
T Consensus 28 ~eYePe~fpgli~Rl~~Pk~t~lIf~sGKiv~tG 61 (179)
T PRK00394 28 AEYNPEQFPGLVYRLEDPKIAALIFRSGKVVCTG 61 (179)
T ss_pred ceeCcccCceEEEEecCCceEEEEEcCCcEEEEc
Confidence 4788888843222222345578899999999998
No 60
>cd00642 GTP_cyclohydro1 GTP cyclohydrolase I (GTP-CH-I) catalyzes the conversion of GTP into dihydroneopterin triphosphate. The enzyme product is the precursor of tetrahydrofolate in eubacteria, fungi, and plants and of the folate analogs in methanogenic bacteria. In vertebrates and insects it is the biosynthtic precursor of tetrahydrobiopterin (BH4) which is involved in the formation of catacholamines, nitric oxide, and the stimulation of T lymphocytes. The biosynthetic reaction of BH4 is controlled by a regulatory protein GFRP which mediates feedback inhibition of GTP-CH-I by BH4. This inhibition is reversed by phenylalanine. The decameric GTP-CH-I forms a complex with two pentameric GFRP in the presence of phenylalanine or a combination of GTP and BH4, respectively.
Probab=21.90 E-value=1.4e+02 Score=22.41 Aligned_cols=26 Identities=8% Similarity=0.208 Sum_probs=21.7
Q ss_pred HHHHHHHHHhChHHHHHHHHHHHHHh
Q 036473 14 VEWALSELIKHPAVMKKLQRELENIV 39 (204)
Q Consensus 14 l~~~l~~L~~~p~~~~~l~~Ei~~~~ 39 (204)
++-.+-..++.|.+||+|-.||...+
T Consensus 103 l~RiV~~~arRlQiQERLt~qIa~al 128 (185)
T cd00642 103 LARIVEFFSRRLQVQERLTKQIAVAI 128 (185)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 55667788999999999999998754
No 61
>PF08492 SRP72: SRP72 RNA-binding domain; InterPro: IPR013699 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the RNA binding domain of the SRP72 subunit. This domain is responsible for the binding of SRP72 to the 7S SRP RNA []. ; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle
Probab=21.39 E-value=62 Score=19.40 Aligned_cols=8 Identities=38% Similarity=0.638 Sum_probs=6.0
Q ss_pred CCCccCCC
Q 036473 116 FPERFVGS 123 (204)
Q Consensus 116 ~P~R~l~~ 123 (204)
||||||.-
T Consensus 44 DPERWLP~ 51 (59)
T PF08492_consen 44 DPERWLPK 51 (59)
T ss_pred CccccCch
Confidence 78888864
No 62
>PLN03044 GTP cyclohydrolase I; Provisional
Probab=21.06 E-value=1.8e+02 Score=21.95 Aligned_cols=27 Identities=7% Similarity=0.192 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHh
Q 036473 13 VVEWALSELIKHPAVMKKLQRELENIV 39 (204)
Q Consensus 13 ~l~~~l~~L~~~p~~~~~l~~Ei~~~~ 39 (204)
-++-..-..++.|.+|++|-.+|...+
T Consensus 103 Kl~RiV~~~arRlQiQERLT~qIa~~l 129 (188)
T PLN03044 103 KLARIAEVYARRLQTQERLTRQIADAI 129 (188)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 355677788999999999999998754
No 63
>COG0302 FolE GTP cyclohydrolase I [Coenzyme metabolism]
Probab=21.04 E-value=1.7e+02 Score=22.19 Aligned_cols=26 Identities=8% Similarity=0.267 Sum_probs=21.6
Q ss_pred HHHHHHHHHhChHHHHHHHHHHHHHh
Q 036473 14 VEWALSELIKHPAVMKKLQRELENIV 39 (204)
Q Consensus 14 l~~~l~~L~~~p~~~~~l~~Ei~~~~ 39 (204)
++-++-..++.|.+|+++-++|..++
T Consensus 112 iaRiV~~~arR~QvQErlT~qIA~al 137 (195)
T COG0302 112 IARIVDIFARRLQVQERLTEQIADAL 137 (195)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 55667778999999999999998764
No 64
>COG5598 Trimethylamine:corrinoid methyltransferase [Coenzyme metabolism]
Probab=20.90 E-value=1.5e+02 Score=26.06 Aligned_cols=35 Identities=11% Similarity=-0.051 Sum_probs=22.7
Q ss_pred ceeeccCCCCCC---ccHHHHHHHHHHHHHHHhhhcee
Q 036473 133 QLLPFGSGRRAC---PGMQLALTVVKQVTAQLVHCFDW 167 (204)
Q Consensus 133 ~~~pFg~G~r~C---~G~~lA~~~~~~~la~ll~~f~~ 167 (204)
.|.|++++++.| -|++.+..+-..=+++|.+.++.
T Consensus 136 ~f~~~~gap~v~Dl~~grr~gtl~D~~n~~kLa~~~~~ 173 (526)
T COG5598 136 HFGPAYGAPNVRDLDKGRRYGTLEDYRNLAKLAQHAPN 173 (526)
T ss_pred EEEecCCCceeeeccCCcccchHHHHHHHHHHHhhcch
Confidence 455666666666 26666677777777777777753
No 65
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=20.79 E-value=93 Score=23.07 Aligned_cols=31 Identities=32% Similarity=0.470 Sum_probs=26.7
Q ss_pred CceeeccCCCCCCccHHHHHHHHHHHHHHHhhhceeecC
Q 036473 132 FQLLPFGSGRRACPGMQLALTVVKQVTAQLVHCFDWELP 170 (204)
Q Consensus 132 ~~~~pFg~G~r~C~G~~lA~~~~~~~la~ll~~f~~~~~ 170 (204)
...+.+|.|.-.|=.|+|| +.|+.+|+.+-+
T Consensus 42 ~Kvl~cGNGgSaadAqHfa--------ael~gRf~~eR~ 72 (176)
T COG0279 42 NKVLACGNGGSAADAQHFA--------AELTGRFEKERP 72 (176)
T ss_pred CEEEEECCCcchhhHHHHH--------HHHhhHHHhcCC
Confidence 3678999999999999998 889999998754
Done!