Query 036474
Match_columns 646
No_of_seqs 363 out of 1709
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 02:29:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036474.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036474hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03547 Mem_trans: Membrane t 100.0 1.8E-44 3.9E-49 382.9 33.3 376 10-641 2-385 (385)
2 TIGR00946 2a69 he Auxin Efflux 100.0 8E-42 1.7E-46 357.6 35.2 150 490-645 172-321 (321)
3 PRK09903 putative transporter 100.0 4.2E-41 9E-46 352.0 36.2 303 9-645 4-311 (314)
4 COG0679 Predicted permeases [G 100.0 2.9E-39 6.3E-44 338.8 37.5 303 7-643 2-307 (311)
5 KOG2722 Predicted membrane pro 99.7 1.8E-17 4E-22 175.4 12.8 147 492-639 240-399 (408)
6 TIGR00841 bass bile acid trans 99.0 3E-09 6.5E-14 111.3 13.2 108 537-644 12-120 (286)
7 TIGR00832 acr3 arsenical-resis 98.7 1E-06 2.2E-11 94.4 18.2 140 494-640 4-152 (328)
8 COG0385 Predicted Na+-dependen 98.6 9.9E-07 2.1E-11 93.9 15.6 120 523-643 29-149 (319)
9 PF01758 SBF: Sodium Bile acid 98.5 2.6E-06 5.6E-11 83.7 14.0 107 538-644 3-111 (187)
10 PF13593 DUF4137: SBF-like CPA 97.8 0.00031 6.6E-09 75.1 13.8 139 500-643 1-145 (313)
11 COG0798 ACR3 Arsenite efflux p 97.0 0.017 3.8E-07 62.3 15.1 146 491-644 9-165 (342)
12 TIGR00841 bass bile acid trans 96.0 0.078 1.7E-06 55.9 12.4 139 7-153 133-277 (286)
13 PF04172 LrgB: LrgB-like famil 95.9 0.28 6E-06 50.3 15.2 143 490-641 11-155 (215)
14 PRK04288 antiholin-like protei 95.7 0.52 1.1E-05 48.9 16.3 138 495-642 32-172 (232)
15 PRK10711 hypothetical protein; 95.7 0.28 6.1E-06 50.8 14.3 140 494-641 26-166 (231)
16 TIGR00659 conserved hypothetic 95.4 0.63 1.4E-05 48.2 15.7 139 494-640 25-164 (226)
17 COG1346 LrgB Putative effector 95.0 0.68 1.5E-05 47.9 14.5 137 490-636 24-163 (230)
18 PF03601 Cons_hypoth698: Conse 94.8 0.51 1.1E-05 50.7 13.7 142 498-645 25-170 (305)
19 PF03812 KdgT: 2-keto-3-deoxyg 93.5 1 2.2E-05 48.7 12.4 113 502-623 15-141 (314)
20 COG2855 Predicted membrane pro 92.0 1.3 2.8E-05 48.3 11.0 138 501-645 39-179 (334)
21 PRK03659 glutathione-regulated 92.0 5.3 0.00011 46.7 16.7 135 499-641 237-373 (601)
22 PRK03562 glutathione-regulated 91.2 6.9 0.00015 46.0 16.7 133 500-640 241-375 (621)
23 PF05684 DUF819: Protein of un 90.3 9 0.00019 42.5 15.7 139 10-155 21-168 (378)
24 TIGR00698 conserved hypothetic 89.1 3.8 8.2E-05 44.8 11.5 142 499-645 31-176 (335)
25 TIGR00932 2a37 transporter, mo 87.9 30 0.00065 35.8 16.8 94 489-591 6-102 (273)
26 PF13593 DUF4137: SBF-like CPA 86.8 21 0.00046 38.5 15.3 133 17-152 167-308 (313)
27 PRK10669 putative cation:proto 86.5 24 0.00052 40.7 16.6 135 499-641 248-384 (558)
28 PRK12460 2-keto-3-deoxyglucona 84.9 6 0.00013 42.9 9.9 81 502-592 169-249 (312)
29 TIGR00783 ccs citrate carrier 84.8 4.9 0.00011 44.2 9.3 98 17-117 207-315 (347)
30 KOG2718 Na+-bile acid cotransp 84.3 1.2 2.7E-05 49.1 4.6 108 537-644 117-226 (371)
31 TIGR00844 c_cpa1 na(+)/h(+) an 83.0 26 0.00056 42.7 15.0 93 491-589 29-129 (810)
32 PRK12460 2-keto-3-deoxyglucona 78.9 8.1 0.00017 42.0 8.3 85 537-624 49-137 (312)
33 PRK03562 glutathione-regulated 78.5 52 0.0011 38.8 15.4 117 490-614 20-138 (621)
34 COG0385 Predicted Na+-dependen 76.7 37 0.00081 37.1 12.5 127 17-150 170-303 (319)
35 TIGR00793 kdgT 2-keto-3-deoxyg 76.1 6.1 0.00013 42.8 6.3 85 538-624 50-142 (314)
36 TIGR03082 Gneg_AbrB_dup membra 75.5 81 0.0018 30.5 17.6 121 496-628 15-140 (156)
37 COG0798 ACR3 Arsenite efflux p 75.1 36 0.00078 37.5 11.9 146 2-154 172-328 (342)
38 PRK05326 potassium/proton anti 74.5 56 0.0012 37.8 14.2 94 489-590 20-117 (562)
39 PLN03159 cation/H(+) antiporte 73.6 88 0.0019 38.4 16.0 85 489-579 57-149 (832)
40 PRK10669 putative cation:proto 72.6 1.1E+02 0.0023 35.4 15.8 117 489-613 20-138 (558)
41 TIGR00832 acr3 arsenical-resis 69.4 29 0.00062 37.7 9.7 116 525-640 205-324 (328)
42 COG3329 Predicted permease [Ge 69.2 1.9E+02 0.004 32.0 20.7 62 489-553 206-267 (372)
43 PRK03659 glutathione-regulated 68.9 1.4E+02 0.003 35.1 15.8 113 493-614 23-138 (601)
44 COG0475 KefB Kef-type K+ trans 67.7 1.2E+02 0.0027 33.7 14.4 132 492-631 23-158 (397)
45 PF05145 AmoA: Putative ammoni 66.1 2E+02 0.0043 31.2 16.7 120 501-632 179-301 (318)
46 PF03390 2HCT: 2-hydroxycarbox 64.3 44 0.00096 37.8 10.0 90 26-116 282-381 (414)
47 PF05982 DUF897: Domain of unk 59.2 1.1E+02 0.0025 33.6 11.7 135 490-632 167-305 (327)
48 KOG4821 Predicted Na+-dependen 57.1 22 0.00049 37.0 5.7 94 543-639 64-162 (287)
49 PF05684 DUF819: Protein of un 51.2 3.9E+02 0.0085 29.8 16.1 129 499-633 25-157 (378)
50 PRK05326 potassium/proton anti 51.1 1.7E+02 0.0036 34.0 12.3 108 499-613 244-351 (562)
51 PRK15060 L-dehydroascorbate tr 47.6 4.8E+02 0.01 29.8 16.2 92 520-627 294-397 (425)
52 PRK03818 putative transporter; 47.1 4E+02 0.0086 31.3 14.5 94 504-602 35-130 (552)
53 TIGR00844 c_cpa1 na(+)/h(+) an 47.0 2E+02 0.0042 35.5 12.1 110 499-612 264-378 (810)
54 PF05145 AmoA: Putative ammoni 44.9 4.4E+02 0.0095 28.6 15.6 57 566-626 59-116 (318)
55 PRK05274 2-keto-3-deoxyglucona 44.8 57 0.0012 35.7 6.8 98 538-639 204-306 (326)
56 COG3180 AbrB Putative ammonia 41.5 5.5E+02 0.012 28.7 16.5 130 489-630 198-332 (352)
57 TIGR03802 Asp_Ala_antiprt aspa 40.8 3.2E+02 0.007 32.0 12.5 78 504-593 40-119 (562)
58 PLN03159 cation/H(+) antiporte 36.6 3.4E+02 0.0074 33.4 12.3 117 35-154 312-438 (832)
59 PF03547 Mem_trans: Membrane t 35.3 5.6E+02 0.012 27.6 12.6 99 500-604 7-105 (385)
60 COG3493 CitS Na+/citrate sympo 34.3 2.6E+02 0.0056 31.8 9.7 88 16-106 292-387 (438)
61 TIGR00819 ydaH p-Aminobenzoyl- 34.0 8.4E+02 0.018 28.7 14.6 91 525-621 370-469 (513)
62 PF03616 Glt_symporter: Sodium 33.3 3E+02 0.0065 30.6 10.2 61 39-99 273-336 (368)
63 COG5505 Predicted integral mem 33.0 6.7E+02 0.014 28.0 12.2 116 503-633 251-367 (384)
64 TIGR03109 exosortase_1 exosort 31.9 1.9E+02 0.0042 30.7 8.1 90 520-609 127-219 (267)
65 PRK04972 putative transporter; 31.5 8.4E+02 0.018 28.7 13.9 84 504-602 42-129 (558)
66 PF05982 DUF897: Domain of unk 30.6 5.5E+02 0.012 28.4 11.4 106 16-127 1-110 (327)
67 COG3180 AbrB Putative ammonia 30.0 8.3E+02 0.018 27.4 16.8 61 561-625 87-148 (352)
68 COG0475 KefB Kef-type K+ trans 29.9 8.2E+02 0.018 27.3 15.9 50 499-553 243-293 (397)
69 TIGR00698 conserved hypothetic 29.2 3.5E+02 0.0076 29.8 9.8 62 500-567 251-313 (335)
70 KOG2532 Permease of the major 28.0 4.2E+02 0.009 30.3 10.5 40 494-533 251-291 (466)
71 TIGR00807 malonate_madL malona 27.5 3.8E+02 0.0083 25.7 8.2 80 13-94 36-117 (125)
72 TIGR00783 ccs citrate carrier 27.3 5.8E+02 0.013 28.5 11.0 105 31-138 6-124 (347)
73 PF12273 RCR: Chitin synthesis 26.4 67 0.0015 30.1 3.3 23 69-91 2-24 (130)
74 PF10766 DUF2592: Protein of u 26.3 1.1E+02 0.0025 23.8 3.8 25 491-515 3-27 (41)
75 COG0025 NhaP NhaP-type Na+/H+ 25.9 1E+03 0.022 27.0 13.3 114 502-621 33-149 (429)
76 PF11299 DUF3100: Protein of u 25.4 1.2E+02 0.0026 32.0 5.1 115 496-621 18-140 (241)
77 COG3329 Predicted permease [Ge 25.2 8.1E+02 0.018 27.3 11.3 53 487-549 5-57 (372)
78 PF03222 Trp_Tyr_perm: Tryptop 24.8 9.9E+02 0.022 26.6 16.5 45 596-640 184-235 (394)
79 PF07889 DUF1664: Protein of u 24.6 66 0.0014 30.7 2.8 35 13-47 8-46 (126)
80 PF03956 DUF340: Membrane prot 24.5 3.3E+02 0.0071 27.6 7.9 44 503-554 2-45 (191)
81 PF03601 Cons_hypoth698: Conse 24.4 6.3E+02 0.014 27.4 10.6 58 500-563 243-301 (305)
82 PF04235 DUF418: Protein of un 24.4 6.2E+02 0.013 24.1 10.0 67 34-100 87-154 (163)
83 COG1968 BacA Undecaprenyl pyro 24.2 8.2E+02 0.018 26.4 11.1 97 537-633 116-229 (270)
84 PF09925 DUF2157: Predicted me 24.2 6.2E+02 0.013 24.0 10.7 50 587-637 85-134 (145)
85 COG0598 CorA Mg2+ and Co2+ tra 23.9 5.3E+02 0.012 27.8 9.9 58 6-71 234-296 (322)
86 PRK12585 putative monovalent c 23.4 2E+02 0.0043 29.6 6.0 62 521-583 28-89 (197)
87 PF03817 MadL: Malonate transp 22.4 5.2E+02 0.011 24.8 8.1 79 14-94 37-117 (125)
88 TIGR00793 kdgT 2-keto-3-deoxyg 22.3 4.4E+02 0.0095 29.0 8.7 67 500-579 176-242 (314)
89 PF06942 GlpM: GlpM protein; 22.3 6.6E+02 0.014 23.6 8.9 77 11-91 27-105 (107)
90 TIGR00831 a_cpa1 Na+/H+ antipo 22.0 1.2E+03 0.025 27.1 12.8 131 16-154 24-158 (525)
91 PF03812 KdgT: 2-keto-3-deoxyg 21.9 4.3E+02 0.0093 29.1 8.6 65 500-577 176-240 (314)
92 PF11712 Vma12: Endoplasmic re 21.6 4.9E+02 0.011 24.8 8.2 24 6-29 78-101 (142)
93 PF09515 Thia_YuaJ: Thiamine t 21.4 5.6E+02 0.012 25.8 8.8 117 498-638 40-166 (177)
94 PF11992 DUF3488: Domain of un 20.4 1.1E+03 0.024 25.5 13.1 21 624-644 157-177 (325)
95 TIGR00210 gltS sodium--glutama 20.1 2.9E+02 0.0064 31.1 7.2 58 42-99 274-334 (398)
No 1
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=100.00 E-value=1.8e-44 Score=382.93 Aligned_cols=376 Identities=30% Similarity=0.457 Sum_probs=298.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccChhhhhHHHHHHHHHHHHHHHHHHhhcCCccc-c-hhHHHHHH-HHHHHHHHHHH
Q 036474 10 VLAAIVPLYVAMILAYGSVRWWKIFTPDQCSGINRFVAVFAVPLLSFHFISLNDPYA-M-NYHFIAAD-SLQKVVILAAL 86 (646)
Q Consensus 10 IL~~ilPVFlLI~LGyla~R~~glfs~e~~~~LnrFV~~~ALPALLF~~lA~~~l~~-l-~~~filay-~l~~ll~f~l~ 86 (646)
+++.++|+|+++++||+++| +|++++++.+.++++|+|+++||++|..+++.+..+ + ++.++..+ .+..++.+++.
T Consensus 2 v~~~i~~i~~ii~~G~~~~~-~~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (385)
T PF03547_consen 2 VFSAILPIFLIILLGYLLGR-FGILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLLSLWFIPVFAFIIFILGLLLG 80 (385)
T ss_pred cHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 68899999999999999999 599999999999999999999999999999976444 3 44444333 33333444444
Q ss_pred HHHHHHHhcCCcchhHHhhhh-cccCcccccHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHHHHHHHhcccchhhhccC
Q 036474 87 FLWQAFTKHGNLEWMITLFSL-STLPNTLVMGIPLLKAMYGDDSGSLMVQVVVLQSVIWYTLMLFMFEYRGAKLLITEQF 165 (646)
Q Consensus 87 ~l~ar~~~~~~~~~~aal~al-asfsNtgfmGiPLl~aLfG~eal~~l~livvv~~lil~~l~lvLmE~~~a~~~~~~~~ 165 (646)
+++.|+++ .+.++ ...+.+ ++|+|++++|+|++.++||+++..++.++.+++++++|+++..++|.++++....++.
T Consensus 81 ~~~~~~~~-~~~~~-~~~~~~~~~~~N~~~lglpi~~~l~g~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~ 158 (385)
T PF03547_consen 81 FLLSRLFR-LPKEW-RGVFVLAASFGNTGFLGLPILQALFGERGVAYAIIFDVVNNIILWSLGYFLLESRSEKEDKSEEE 158 (385)
T ss_pred HHHHHhcC-CCccc-ceEEEecccCCcchhhHHHHHHHHhcchhhhhehHHHHhhHHHHHHHHHHhhccccccccccccc
Confidence 55555433 34443 345555 8999999999999999999999999999999999999999999999988776666666
Q ss_pred CCccCcccceeecCcccccCCCCCcccccccCCCCceEEEEeecCCccccccccccCCCCccccCCCCCCCCCCcceecc
Q 036474 166 PETAGSITSFRVDSDVVSLNGREPLQTDAEIGDDGKLHVVVRRSSASSIVSSFNKSHGLNSLTSMTPRASNLTGVEIYSV 245 (646)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (646)
+++..+..+.+.|++..+.++.++..+|.++++|++.+...+++..+. .+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--------------------------- 209 (385)
T PF03547_consen 159 PSSAESIDSEQEDSDEMSLDGSSPSSTEEEIDEDGSPSSTPSQSSASA--PSS--------------------------- 209 (385)
T ss_pred ccccccccccccCCccccCCcccccccccccccCCccccccccccccc--chh---------------------------
Confidence 666777889999999999999988899999998888776655444330 000
Q ss_pred cCCCCCCCCCCCCCchhhhhhhhcCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCchhHHhhhccCCCCCCCCCCc
Q 036474 246 QSSREPTPRASSFNQNDFYAMFASKAPSPKHGYTNSFQGGIGDVYSLQSSKGATPRTSNFDEEMFKLGNKKRGGRSMSGE 325 (646)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (646)
...+|+.+
T Consensus 210 --------------------------------------------------~~~~~~~~---------------------- 217 (385)
T PF03547_consen 210 --------------------------------------------------VSTSPSPS---------------------- 217 (385)
T ss_pred --------------------------------------------------hccCCccc----------------------
Confidence 00000000
Q ss_pred cccCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCcccceeeecCCCCCCCcccchhhccccccccc
Q 036474 326 LFNGGLVSSYPPPNPMFSGGTSAGARKKESAGGGGSGGGAAPAGVPNNKELHMFVWSSTASPVSEGNLRHAVNRAASADF 405 (646)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (646)
. .
T Consensus 218 ----------------------------------------------------------------~---------~----- 219 (385)
T PF03547_consen 218 ----------------------------------------------------------------N---------S----- 219 (385)
T ss_pred ----------------------------------------------------------------c---------c-----
Confidence 0 0
Q ss_pred cCCCCcchhhhhhhhHhhHHHHHhhhccCCCccccCccccccccCCCCCCCCCCccccchhhhhhchhhhccCCCchhhh
Q 036474 406 AGVDSSNKAALYHENAASKAMHELIENMSPASKVNGERNLEIEDGSKFPSSGSPYSCQKKMVMEEGDAAKKHQMPPASVM 485 (646)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (646)
+ . .+. + +.-+
T Consensus 220 -----------~-----~-----~~~--------------------------------~-----------------~~~~ 229 (385)
T PF03547_consen 220 -----------T-----G-----AEQ--------------------------------K-----------------SSNS 229 (385)
T ss_pred -----------c-----h-----hhh--------------------------------h-----------------hhhh
Confidence 0 0 000 0 0002
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCCCCCC----HHHHHHHHHHHHhHHHHHHHHHhhhccccchhhhcch
Q 036474 486 TRLILIMVWRKLIRNPNTYSSVLGLIWSLVSYRWHIKMP----TIMSGSISILSDAGLGMAMFSLGLFMALQPKIIACGK 561 (646)
Q Consensus 486 ~~~il~~vlkkllkNP~IiAiilGLilsll~~r~gI~LP----~~L~~tL~~Lg~aa~PLALf~LG~sLa~~~~~~~~~~ 561 (646)
.+..+++.+++.++||+++++++|++++++ ++..| .++.++++++|++++|++||++|+.|+..++.....+
T Consensus 230 ~~~~~~~~~~~~~~nP~~~a~~lgli~~~~----~~~~~~~~~~~i~~~~~~lg~~~~pl~l~~lG~~l~~~~~~~~~~~ 305 (385)
T PF03547_consen 230 TRKKLKKSILKLFKNPPLIAIILGLIIGLI----PPLRPLFFPSFITDSLSYLGAAAVPLALFVLGASLARGPRKSALGW 305 (385)
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHH----HHhcccchHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCcccchhh
Confidence 344567788889999999999999999999 55555 9999999999999999999999999998643334566
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhccchhhHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHH
Q 036474 562 SVATFAMAVRFLTGPAVIAATSIAIGLRGVLLHIAIVQAALPQGIVPFVFAKEYNVHPDILSTAVIFGMLIALPITILYY 641 (646)
Q Consensus 562 k~v~~~vliKLIv~PLLa~ll~~l~gL~~~~~~vlVL~AAmP~Av~~~V~A~~Yg~d~elASsaVllSTLLSLpl~i~l~ 641 (646)
+.....+++|++++|++++++++++++++....++++++++|+|++.+++|++||.+++.++++++++|+++++++++|+
T Consensus 306 ~~~~~~~~~rlii~P~i~~~~~~~~~l~~~~~~~~~~~~~~P~a~~~~~~a~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 385 (385)
T PF03547_consen 306 KPSIIAVLVRLIILPLIGIGIVFLLGLDGDMARVLILQAAMPTAINSFVIASLYGLDEEEASSIVFWSTLLSIPTLPLWI 385 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHhccCCchHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHC
Confidence 66677899999999999999999999999999999999999999999999999999999999999999999988888774
No 2
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=100.00 E-value=8e-42 Score=357.56 Aligned_cols=150 Identities=48% Similarity=0.705 Sum_probs=140.4
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhHHHHHHHHHhhhccccchhhhcchhHHHHHHH
Q 036474 490 LIMVWRKLIRNPNTYSSVLGLIWSLVSYRWHIKMPTIMSGSISILSDAGLGMAMFSLGLFMALQPKIIACGKSVATFAMA 569 (646)
Q Consensus 490 l~~vlkkllkNP~IiAiilGLilsll~~r~gI~LP~~L~~tL~~Lg~aa~PLALf~LG~sLa~~~~~~~~~~k~v~~~vl 569 (646)
+++.+|++++||+++|+++|++++++ |+++|+++.++++++|++++|++|+++|+.+...+ .+..++..+..++
T Consensus 172 ~~~~~~~~~~nP~iia~i~Gl~~~~~----~i~lP~~l~~~l~~lg~~~~plaLl~lG~~l~~~~--~~~~~~~~~~~~~ 245 (321)
T TIGR00946 172 LIFVWKKLIKFPPLWAPLLSVILSLV----GFKMPGLILKSISILSGATTPMALFSLGLALSPRK--IKLGVRDAILALI 245 (321)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHH----hhcCcHHHHHHHHHHHHHHHHHHHHHHHHhhChhh--hccChHHHHHHHH
Confidence 45678899999999999999999999 99999999999999999999999999999998753 3456688899999
Q ss_pred HHHHHHHHHHHHHHHHhCCChHHHHHHHHHhccchhhHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 036474 570 VRFLTGPAVIAATSIAIGLRGVLLHIAIVQAALPQGIVPFVFAKEYNVHPDILSTAVIFGMLIALPITILYYVLLG 645 (646)
Q Consensus 570 iKLIv~PLLa~ll~~l~gL~~~~~~vlVL~AAmP~Av~~~V~A~~Yg~d~elASsaVllSTLLSLpl~i~l~~LL~ 645 (646)
+|++++|++++++..++++++...+++++++|||+|++++++|++||.|++++++++++||++|++++++|.+++|
T Consensus 246 ~klil~P~i~~~~~~~~~l~~~~~~~~vl~aa~P~a~~~~i~A~~y~~~~~~aa~~v~~sT~ls~~tlp~~~~l~~ 321 (321)
T TIGR00946 246 VRFLVQPAVMAGISKLIGLRGLELSVAILQAALPGGAVAAVLATEYEVDVELASTAVTLSTVLSLISLPLFIILLG 321 (321)
T ss_pred HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHcCChhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999888888875
No 3
>PRK09903 putative transporter YfdV; Provisional
Probab=100.00 E-value=4.2e-41 Score=352.02 Aligned_cols=303 Identities=17% Similarity=0.276 Sum_probs=249.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccChhhhhHHHHHHHHHHHHHHHHHHhhcCCcccc--hhHHHHHHHHHHHHHHHHH
Q 036474 9 DVLAAIVPLYVAMILAYGSVRWWKIFTPDQCSGINRFVAVFAVPLLSFHFISLNDPYAM--NYHFIAADSLQKVVILAAL 86 (646)
Q Consensus 9 ~IL~~ilPVFlLI~LGyla~R~~glfs~e~~~~LnrFV~~~ALPALLF~~lA~~~l~~l--~~~filay~l~~ll~f~l~ 86 (646)
.++++++|+|++|++||+++| +++++++..+++||+|+|+++||++|+++++.+.++. ++.+++...++.++.+++.
T Consensus 4 ~~~~~ilpif~ii~lG~~~~r-~~~~~~~~~~~ls~lv~~v~lPalif~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (314)
T PRK09903 4 FFIGDLLPIIVIMLLGYFSGR-RETFSEDQARAFNKLVLNYALPAALFVSITRANREMIFADTRLTLVSLVVIVGCFFFS 82 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 478899999999999999999 6999999999999999999999999999999877653 6777777777677777666
Q ss_pred HHHHHHHhcCCcchhHHhhhh-cccCcccccHHHHHHHhhcCChh--hHHHHHHHHHHHHHHHHHHHHHHhcccchhhhc
Q 036474 87 FLWQAFTKHGNLEWMITLFSL-STLPNTLVMGIPLLKAMYGDDSG--SLMVQVVVLQSVIWYTLMLFMFEYRGAKLLITE 163 (646)
Q Consensus 87 ~l~ar~~~~~~~~~~aal~al-asfsNtgfmGiPLl~aLfG~eal--~~l~livvv~~lil~~l~lvLmE~~~a~~~~~~ 163 (646)
++..|+..+++.+. .....+ ++++|++|+|+|++.++||+++. .+.+....+++++.++++.++++..+.
T Consensus 83 ~~~~~~~~~~~~~~-~~~~~~~~~~~N~gf~G~Pl~~~~~G~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~------ 155 (314)
T PRK09903 83 WFGCYKFFKRTHAE-AAVCALIAGSPTIGFLGFAVLDPIYGDSVSTGLVVAIISIIVNAITIPIGLYLLNPSSG------ 155 (314)
T ss_pred HHHHHHHhcCCcch-hhHhhhhhcCCCcccccHHHHHHHcCchhhhhhHHHHHHHHHHHHHHHHHHHHHccccc------
Confidence 65555444433322 345555 88999999999999999999943 234445667899999999887632100
Q ss_pred cCCCccCcccceeecCcccccCCCCCcccccccCCCCceEEEEeecCCccccccccccCCCCccccCCCCCCCCCCccee
Q 036474 164 QFPETAGSITSFRVDSDVVSLNGREPLQTDAEIGDDGKLHVVVRRSSASSIVSSFNKSHGLNSLTSMTPRASNLTGVEIY 243 (646)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (646)
T Consensus 156 -------------------------------------------------------------------------------- 155 (314)
T PRK09903 156 -------------------------------------------------------------------------------- 155 (314)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCCCCCCCCCchhhhhhhhcCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCchhHHhhhccCCCCCCCCC
Q 036474 244 SVQSSREPTPRASSFNQNDFYAMFASKAPSPKHGYTNSFQGGIGDVYSLQSSKGATPRTSNFDEEMFKLGNKKRGGRSMS 323 (646)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (646)
+
T Consensus 156 ----------------------------------------~--------------------------------------- 156 (314)
T PRK09903 156 ----------------------------------------A--------------------------------------- 156 (314)
T ss_pred ----------------------------------------c---------------------------------------
Confidence 0
Q ss_pred CccccCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCcccceeeecCCCCCCCcccchhhccccccc
Q 036474 324 GELFNGGLVSSYPPPNPMFSGGTSAGARKKESAGGGGSGGGAAPAGVPNNKELHMFVWSSTASPVSEGNLRHAVNRAASA 403 (646)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (646)
+ +
T Consensus 157 ------------------------------------------------------------------~---------~--- 158 (314)
T PRK09903 157 ------------------------------------------------------------------D---------G--- 158 (314)
T ss_pred ------------------------------------------------------------------c---------c---
Confidence 0 0
Q ss_pred cccCCCCcchhhhhhhhHhhHHHHHhhhccCCCccccCccccccccCCCCCCCCCCccccchhhhhhchhhhccCCCchh
Q 036474 404 DFAGVDSSNKAALYHENAASKAMHELIENMSPASKVNGERNLEIEDGSKFPSSGSPYSCQKKMVMEEGDAAKKHQMPPAS 483 (646)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (646)
. + +
T Consensus 159 -------------~------------~-----------------------------------------------~----- 161 (314)
T PRK09903 159 -------------K------------K-----------------------------------------------N----- 161 (314)
T ss_pred -------------c------------c-----------------------------------------------c-----
Confidence 0 0 0
Q ss_pred hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhHHHHHHHHHhhhccccchhhhcchhH
Q 036474 484 VMTRLILIMVWRKLIRNPNTYSSVLGLIWSLVSYRWHIKMPTIMSGSISILSDAGLGMAMFSLGLFMALQPKIIACGKSV 563 (646)
Q Consensus 484 ~~~~~il~~vlkkllkNP~IiAiilGLilsll~~r~gI~LP~~L~~tL~~Lg~aa~PLALf~LG~sLa~~~~~~~~~~k~ 563 (646)
..++.+|+++|||+++|+++|++++++ |+++|++++++++++|++++|+|||++|++|+..+ . + ..+.
T Consensus 162 -----~~~~~l~~~~~nP~iia~~~gl~~~l~----~i~lP~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~-~-~-~~~~ 229 (314)
T PRK09903 162 -----SNLSALISAAKEPVVWAPVLATILVLV----GVKIPAAWDPTFNLIAKANSGVAVFAAGLTLAAHK-F-E-FSAE 229 (314)
T ss_pred -----hHHHHHHHHHhchHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-c-c-ccHH
Confidence 002456678999999999999999999 99999999999999999999999999999999864 2 2 2356
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhccchhhHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 036474 564 ATFAMAVRFLTGPAVIAATSIAIGLRGVLLHIAIVQAALPQGIVPFVFAKEYNVHPDILSTAVIFGMLIALPITILYYVL 643 (646)
Q Consensus 564 v~~~vliKLIv~PLLa~ll~~l~gL~~~~~~vlVL~AAmP~Av~~~V~A~~Yg~d~elASsaVllSTLLSLpl~i~l~~L 643 (646)
.+...++|++++|+++++++.++++++.+.+++++++|||+|++++++|++||.|++.+++++++||++|+.++++|.++
T Consensus 230 ~~~~~~~Kli~~P~i~~~~~~~~~l~~~~~~v~vl~aa~P~a~~~~i~A~~y~~~~~~aa~~v~~sTlls~iTlpl~~~l 309 (314)
T PRK09903 230 IAYNTFLKLILMPLALLLVGMACHLNSEHLQMMVLAGALPPAFSGIIIASRFNVYTRTGTASLAVSVLGFVVTAPLWIYV 309 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888999999999999988889999999999999999999999999999999999999999999999997777777766
Q ss_pred hc
Q 036474 644 LG 645 (646)
Q Consensus 644 L~ 645 (646)
+.
T Consensus 310 ~~ 311 (314)
T PRK09903 310 SR 311 (314)
T ss_pred HH
Confidence 53
No 4
>COG0679 Predicted permeases [General function prediction only]
Probab=100.00 E-value=2.9e-39 Score=338.79 Aligned_cols=303 Identities=23% Similarity=0.465 Sum_probs=267.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccChhhhhHHHHHHHHHHHHHHHHHHhhcCCcccc-hhHHHHHHHHHHHHHHHH
Q 036474 7 IYDVLAAIVPLYVAMILAYGSVRWWKIFTPDQCSGINRFVAVFAVPLLSFHFISLNDPYAM-NYHFIAADSLQKVVILAA 85 (646)
Q Consensus 7 M~~IL~~ilPVFlLI~LGyla~R~~glfs~e~~~~LnrFV~~~ALPALLF~~lA~~~l~~l-~~~filay~l~~ll~f~l 85 (646)
|+.++..++|+|++|++||+++|+ +.++++..++++++|+|+++||++|+.+++++.+.. ++.++..++++.++++++
T Consensus 2 ~~~~~~~vlpi~lii~lGy~~~r~-~~~~~~~~~~ls~lv~~~~lP~LlF~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (311)
T COG0679 2 MMIVFEVVLPIFLIILLGYLLKRF-GILDEEAARGLSRLVVYVALPALLFNSIATADLSGLADLGLIVASLVATLLAFFL 80 (311)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHh-cccCHHHHHHHHHHHHHHHhHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999995 999999999999999999999999999999999986 899999999999999988
Q ss_pred HHHHHHHHhcCCcchhHHhhhh-cccCcccccHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcc
Q 036474 86 LFLWQAFTKHGNLEWMITLFSL-STLPNTLVMGIPLLKAMYGDDSGSLMVQVVVLQSVIWYTLMLFMFEYRGAKLLITEQ 164 (646)
Q Consensus 86 ~~l~ar~~~~~~~~~~aal~al-asfsNtgfmGiPLl~aLfG~eal~~l~livvv~~lil~~l~lvLmE~~~a~~~~~~~ 164 (646)
..++.|+.++++.++ ...+.+ +.|+|++|+|+|++..+||++++.+.+++..++++..+.++.++++..+.
T Consensus 81 ~~~~~~~~~~~~~~~-~~~~~~~~~~~N~g~lg~pi~~~~~G~~gl~~~~i~~~~~~~~~~~~g~~~l~~~~~------- 152 (311)
T COG0679 81 LALIGRFLFKLDKRE-TVIFALASAFPNIGFLGLPVALSLFGEKGLAYAVIFLIIGLFLMFTLGVILLARSGG------- 152 (311)
T ss_pred HHHHHHHHhccchhh-HHHHHHHHHhcccchhhHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------
Confidence 888888887766665 445556 89999999999999999999999999999999999999999998854210
Q ss_pred CCCccCcccceeecCcccccCCCCCcccccccCCCCceEEEEeecCCccccccccccCCCCccccCCCCCCCCCCcceec
Q 036474 165 FPETAGSITSFRVDSDVVSLNGREPLQTDAEIGDDGKLHVVVRRSSASSIVSSFNKSHGLNSLTSMTPRASNLTGVEIYS 244 (646)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (646)
T Consensus 153 -------------------------------------------------------------------------------- 152 (311)
T COG0679 153 -------------------------------------------------------------------------------- 152 (311)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCCCCCCCCchhhhhhhhcCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCchhHHhhhccCCCCCCCCCC
Q 036474 245 VQSSREPTPRASSFNQNDFYAMFASKAPSPKHGYTNSFQGGIGDVYSLQSSKGATPRTSNFDEEMFKLGNKKRGGRSMSG 324 (646)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (646)
T Consensus 153 -------------------------------------------------------------------------------- 152 (311)
T COG0679 153 -------------------------------------------------------------------------------- 152 (311)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCcccceeeecCCCCCCCcccchhhcccccccc
Q 036474 325 ELFNGGLVSSYPPPNPMFSGGTSAGARKKESAGGGGSGGGAAPAGVPNNKELHMFVWSSTASPVSEGNLRHAVNRAASAD 404 (646)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (646)
+ .
T Consensus 153 -----------------------------------------------------------------~---------~---- 154 (311)
T COG0679 153 -----------------------------------------------------------------G---------T---- 154 (311)
T ss_pred -----------------------------------------------------------------C---------c----
Confidence 0 0
Q ss_pred ccCCCCcchhhhhhhhHhhHHHHHhhhccCCCccccCccccccccCCCCCCCCCCccccchhhhhhchhhhccCCCchhh
Q 036474 405 FAGVDSSNKAALYHENAASKAMHELIENMSPASKVNGERNLEIEDGSKFPSSGSPYSCQKKMVMEEGDAAKKHQMPPASV 484 (646)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (646)
.
T Consensus 155 ------------~------------------------------------------------------------------- 155 (311)
T COG0679 155 ------------N------------------------------------------------------------------- 155 (311)
T ss_pred ------------h-------------------------------------------------------------------
Confidence 0
Q ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhHHHHHHHHHhhhccccchhhhcchhHH
Q 036474 485 MTRLILIMVWRKLIRNPNTYSSVLGLIWSLVSYRWHIKMPTIMSGSISILSDAGLGMAMFSLGLFMALQPKIIACGKSVA 564 (646)
Q Consensus 485 ~~~~il~~vlkkllkNP~IiAiilGLilsll~~r~gI~LP~~L~~tL~~Lg~aa~PLALf~LG~sLa~~~~~~~~~~k~v 564 (646)
...+++.|++++||+++|.++|+++++. |+++|+++++++++++++++|++|+++|++|+... ......+.+
T Consensus 156 ---~~~~~~~~~~~~nP~i~a~i~g~~~~~~----~i~lP~~~~~~~~~l~~a~~pl~li~lG~~L~~~~-~~~~~~~~~ 227 (311)
T COG0679 156 ---KSLLSVLKKLLTNPLIIALILGLLLNLL----GISLPAPLDTAVDLLASAASPLALIALGLSLAFLK-LKGSKPPII 227 (311)
T ss_pred ---hHHHHHHHHHHhCcHHHHHHHHHHHHHc----CCCCcHHHHHHHHHHHHhhhhHHHHHHhhhcchhh-hccccchhH
Confidence 0123567789999999999999999999 99999999999999999999999999999999842 333445556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhccchhhHHHHHHHHcCCChhHHHHHHHHHHHHHHHHH-HHHHHH
Q 036474 565 TFAMAVRFLTGPAVIAATSIAIGLRGVLLHIAIVQAALPQGIVPFVFAKEYNVHPDILSTAVIFGMLIALPIT-ILYYVL 643 (646)
Q Consensus 565 ~~~vliKLIv~PLLa~ll~~l~gL~~~~~~vlVL~AAmP~Av~~~V~A~~Yg~d~elASsaVllSTLLSLpl~-i~l~~L 643 (646)
.....+|++++|++++++.+++|+++++.+++++++|||+|++++++|+|||.|++.+++.+++||++|+.++ .+++++
T Consensus 228 ~~~~~~kll~~Pl~~~~~~~~~~l~~~~~~v~vl~~a~P~A~~~~v~a~~~~~~~~laa~~i~ist~ls~~t~p~~~~~l 307 (311)
T COG0679 228 LIALSLKLLLAPLVALLVAKLLGLSGLALQVLVLLSAMPTAVNAYVLARQYGGDPRLAASTILLSTLLSLLTLPLLILLL 307 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhhCcHHhHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666779999999999999999999999999999999999999999999999999999999999999996666 444444
No 5
>KOG2722 consensus Predicted membrane protein [Function unknown]
Probab=99.73 E-value=1.8e-17 Score=175.36 Aligned_cols=147 Identities=18% Similarity=0.256 Sum_probs=118.6
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHh-hc---CCCCCC-HHHHHHHHHHHHhHHHHHHHHHhhhccccchhhhcchhHHHH
Q 036474 492 MVWRKLIRNPNTYSSVLGLIWSLVS-YR---WHIKMP-TIMSGSISILSDAGLGMAMFSLGLFMALQPKIIACGKSVATF 566 (646)
Q Consensus 492 ~vlkkllkNP~IiAiilGLilsll~-~r---~gI~LP-~~L~~tL~~Lg~aa~PLALf~LG~sLa~~~~~~~~~~k~v~~ 566 (646)
..+|. +.+|+++|.++|+++.... .| ++-.-| ..+.+++.++|+.++|+.++++|..|....+....+.+.++.
T Consensus 240 ~~L~~-i~~Pptia~iiA~vigai~pLr~lifg~~apl~~itdsv~llG~~~IP~illvLGgnL~~g~~ss~~~~~~iig 318 (408)
T KOG2722|consen 240 VILKE-IFAPPTIAAIIALVIGAIPPLRRLIFGEDAPLRVITDSVTLLGDGAIPCILLVLGGNLIQGLRSSALKTSVIIG 318 (408)
T ss_pred hhHHH-hcCchHHHHHHHHHHhcchHHHHHhhccCchHHHHHHHHHHhccccchhhhhhhccccccCchhcccCceEEEE
Confidence 44555 5699999999999998873 12 132333 589999999999999999999999998765443445566677
Q ss_pred HHHHHHHHHHHHHHHHHHH---hC----CChHHHHHHHHHhccchhhHHHHHHHHcCCChhHHHHHHHHHHHHH-HHHHH
Q 036474 567 AMAVRFLTGPAVIAATSIA---IG----LRGVLLHIAIVQAALPQGIVPFVFAKEYNVHPDILSTAVIFGMLIA-LPITI 638 (646)
Q Consensus 567 ~vliKLIv~PLLa~ll~~l---~g----L~~~~~~vlVL~AAmP~Av~~~V~A~~Yg~d~elASsaVllSTLLS-Lpl~i 638 (646)
+++.|+++.|++...+... +| -||....|++|+.++|+|++-.-++|.+|..++++|..++|+.++. +++.+
T Consensus 319 iii~R~illP~~gl~iv~~A~kl~~ls~~DPlF~~VllLq~~~PpAi~lg~itqL~g~~e~Ecs~il~W~y~va~l~ltv 398 (408)
T KOG2722|consen 319 IIIGRYILLPLVGLGIVRLADKLGLLSTDDPLFQFVLLLQYASPPAINLGTITQLNGVAERECSVILFWTYAVASLSLTV 398 (408)
T ss_pred EEEeeeeccchhhHHHHHHHHHhCcCCCCCchhhhhhhhhhcCCchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 8899999999998887643 22 4688999999999999999999999999999999999999999865 44444
Q ss_pred H
Q 036474 639 L 639 (646)
Q Consensus 639 ~ 639 (646)
|
T Consensus 399 w 399 (408)
T KOG2722|consen 399 W 399 (408)
T ss_pred H
Confidence 4
No 6
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=99.01 E-value=3e-09 Score=111.29 Aligned_cols=108 Identities=15% Similarity=0.069 Sum_probs=92.7
Q ss_pred hHHHHHHHHHhhhccccch-hhhcchhHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhccchhhHHHHHHHHc
Q 036474 537 AGLGMAMFSLGLFMALQPK-IIACGKSVATFAMAVRFLTGPAVIAATSIAIGLRGVLLHIAIVQAALPQGIVPFVFAKEY 615 (646)
Q Consensus 537 aa~PLALf~LG~sLa~~~~-~~~~~~k~v~~~vliKLIv~PLLa~ll~~l~gL~~~~~~vlVL~AAmP~Av~~~V~A~~Y 615 (646)
....++||.+|+.|..... ....+.+......+.|++++|++++++..++++++.+...+++++++|++.++++++++|
T Consensus 12 ~~l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla~~l~~~~~l~~~~~~glvL~~~~P~~~~s~v~t~~~ 91 (286)
T TIGR00841 12 ILLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLAKVFKLPPELAVGVLIVGCCPGGTASNVFTYLL 91 (286)
T ss_pred HHHHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHheeeCCCchHHHHHHHHh
Confidence 3478899999999998641 112334567788899999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHh
Q 036474 616 NVHPDILSTAVIFGMLIALPITILYYVLL 644 (646)
Q Consensus 616 g~d~elASsaVllSTLLSLpl~i~l~~LL 644 (646)
|.|.+++++.+.+||++|+.++++|..++
T Consensus 92 ~gn~~la~~~~~~stlls~vt~Pl~l~~~ 120 (286)
T TIGR00841 92 KGDMALSISMTTCSTLLALGMMPLLLYIY 120 (286)
T ss_pred CCCHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999976666655443
No 7
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=98.66 E-value=1e-06 Score=94.36 Aligned_cols=140 Identities=8% Similarity=0.058 Sum_probs=108.5
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHH-HHHhHHH------HHHHHHhhhccccc-hhhhcchhHHH
Q 036474 494 WRKLIRNPNTYSSVLGLIWSLVSYRWHIKMPTIMSGSISI-LSDAGLG------MAMFSLGLFMALQP-KIIACGKSVAT 565 (646)
Q Consensus 494 lkkllkNP~IiAiilGLilsll~~r~gI~LP~~L~~tL~~-Lg~aa~P------LALf~LG~sLa~~~-~~~~~~~k~v~ 565 (646)
+++.+....++++++|++..+. .|......-.. +.....| +.||.+|+.|..+. +...++.|...
T Consensus 4 ~~~~~~~~~~~~~i~~~~~g~~-------~P~~~~~~~~~~~~~~~~~~~~~l~~mmf~mgl~L~~~df~~~~~~pk~~~ 76 (328)
T TIGR00832 4 LERYLTLWIFLAIAAGVGLGVL-------FPSVFQALAALEVATVSIPIAIGLILMMYPPLAKVDYSALGDVFKDPKGLI 76 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-------ccccHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcCCHHHHHHHHcCchHHH
Confidence 4455667778888889888887 55433222111 1223333 46788888887654 22345678899
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-CCChHHHHHHHHHhccchhhHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHH
Q 036474 566 FAMAVRFLTGPAVIAATSIAI-GLRGVLLHIAIVQAALPQGIVPFVFAKEYNVHPDILSTAVIFGMLIALPITILY 640 (646)
Q Consensus 566 ~~vliKLIv~PLLa~ll~~l~-gL~~~~~~vlVL~AAmP~Av~~~V~A~~Yg~d~elASsaVllSTLLSLpl~i~l 640 (646)
...+..++++|+++|++.+++ +++++...-+++.+++|.+..+.++....|.|..++.+.+.++|++++.+++.+
T Consensus 77 ~~~~~qfvi~Plla~~l~~l~~~~~p~l~~GliLv~~~Pgg~~S~v~T~lAkGnvalsv~lt~~stLl~~~~~P~l 152 (328)
T TIGR00832 77 LSLFINWIIGPFLMFLLAWLFLRDLFEYIAGLILLGLARCIAMVFVWNQLAKGDPEYTLVLVAVNSLFQVFLYAPL 152 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999864 999999999999999999999999999999999999999999999996555444
No 8
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=98.59 E-value=9.9e-07 Score=93.94 Aligned_cols=120 Identities=15% Similarity=0.124 Sum_probs=98.9
Q ss_pred CCHHHHHHHHHHHHhHHHHHHHHHhhhccccc-hhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhc
Q 036474 523 MPTIMSGSISILSDAGLGMAMFSLGLFMALQP-KIIACGKSVATFAMAVRFLTGPAVIAATSIAIGLRGVLLHIAIVQAA 601 (646)
Q Consensus 523 LP~~L~~tL~~Lg~aa~PLALf~LG~sLa~~~-~~~~~~~k~v~~~vliKLIv~PLLa~ll~~l~gL~~~~~~vlVL~AA 601 (646)
.|+.....-..+ .....+.||..|+.|.... +.....++..+..++..++++|++++++.+++.++++...-+++.++
T Consensus 29 ~~~~~~~~~~~~-~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~~~~l~~~l~~Gl~ll~~ 107 (319)
T COG0385 29 FPETFGWLGSAI-PIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAKLFPLPPELAVGLLLLGC 107 (319)
T ss_pred ccccchhhhHHH-HHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhHHheee
Confidence 455443332222 5667788888888888764 22346788899999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 036474 602 LPQGIVPFVFAKEYNVHPDILSTAVIFGMLIALPITILYYVL 643 (646)
Q Consensus 602 mP~Av~~~V~A~~Yg~d~elASsaVllSTLLSLpl~i~l~~L 643 (646)
+|.++.+.+++..++.|...+-+...+||+++..+++++..+
T Consensus 108 ~Pggv~S~~~t~lAkGnValsV~~tsvStll~~f~tPllv~l 149 (319)
T COG0385 108 CPGGVASNAMTYLAKGNVALSVCSTSVSTLLGPFLTPLLVGL 149 (319)
T ss_pred CCCchhHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999996666655444
No 9
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=98.48 E-value=2.6e-06 Score=83.73 Aligned_cols=107 Identities=21% Similarity=0.229 Sum_probs=83.8
Q ss_pred HHHHHHHHHhhhccccc-hhhhcchhHHHHHHHHHHHHHHHHHHHHH-HHhCCChHHHHHHHHHhccchhhHHHHHHHHc
Q 036474 538 GLGMAMFSLGLFMALQP-KIIACGKSVATFAMAVRFLTGPAVIAATS-IAIGLRGVLLHIAIVQAALPQGIVPFVFAKEY 615 (646)
Q Consensus 538 a~PLALf~LG~sLa~~~-~~~~~~~k~v~~~vliKLIv~PLLa~ll~-~l~gL~~~~~~vlVL~AAmP~Av~~~V~A~~Y 615 (646)
..-+.||.+|..+...+ +...++.+.+....+.+++++|++++++. .++++++.....+++++++|.+..+.+++...
T Consensus 3 ~l~~~mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~~~~~~~~~~~Gl~l~~~~P~~~~s~~~t~l~ 82 (187)
T PF01758_consen 3 LLFLMMFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWLLLPLSPALALGLLLVAACPGGPASNVFTYLA 82 (187)
T ss_dssp HHHHHHHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-HHTT--HHHHHHHHHHHHS-B-THHHHHHHHT
T ss_pred hhhHHHHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 35678999999998864 12234456677888999999999999999 78899999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHh
Q 036474 616 NVHPDILSTAVIFGMLIALPITILYYVLL 644 (646)
Q Consensus 616 g~d~elASsaVllSTLLSLpl~i~l~~LL 644 (646)
|.|..++.+.+.++|+++..+++++..++
T Consensus 83 ~Gd~~ls~~lt~istll~~~~~P~~~~l~ 111 (187)
T PF01758_consen 83 GGDVALSVSLTLISTLLAPFLMPLLLYLL 111 (187)
T ss_dssp T--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccccceeeHHHHHHHHHHHHHHHHH
Confidence 99999999999999999977766665544
No 10
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=97.80 E-value=0.00031 Score=75.05 Aligned_cols=139 Identities=17% Similarity=0.170 Sum_probs=107.1
Q ss_pred hhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHH--HHHHHhHHHHHHHHHhhhccccchh-hhcchhHHHHHHHHHHHHHH
Q 036474 500 NPNTYSSVLGLIWSLVSYRWHIKMPTIMSGSI--SILSDAGLGMAMFSLGLFMALQPKI-IACGKSVATFAMAVRFLTGP 576 (646)
Q Consensus 500 NP~IiAiilGLilsll~~r~gI~LP~~L~~tL--~~Lg~aa~PLALf~LG~sLa~~~~~-~~~~~k~v~~~vliKLIv~P 576 (646)
|+.++++++++++... ++-|......+ +.....++.+..|.-|+.|...... -..+++........-+++.|
T Consensus 1 ~~fl~~l~~ai~la~~-----~P~~g~~~~~~~~~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~P 75 (313)
T PF13593_consen 1 QWFLLGLLLAILLAYL-----FPAPGAAGGVIKPEYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFP 75 (313)
T ss_pred CchHHHHHHHHHHHHH-----cCcccccCCccchhhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 4677888888888876 23333222233 3556666889999999999876411 24577888889999999999
Q ss_pred HHHHHHHHHh--CCChHHHHHHHHHhccchhhHH-HHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 036474 577 AVIAATSIAI--GLRGVLLHIAIVQAALPQGIVP-FVFAKEYNVHPDILSTAVIFGMLIALPITILYYVL 643 (646)
Q Consensus 577 LLa~ll~~l~--gL~~~~~~vlVL~AAmP~Av~~-~V~A~~Yg~d~elASsaVllSTLLSLpl~i~l~~L 643 (646)
++++++..++ .++++...-+++.++||+.+.+ .++.++.|.|...+-....+++++++.+++.|..+
T Consensus 76 ll~~~~~~l~~~~~~~~l~~Gl~~~~~lPtTv~S~v~~T~~AgGN~a~Al~~~~~snllgv~ltP~ll~l 145 (313)
T PF13593_consen 76 LLGFGLSRLFPAFLPPELALGLLILACLPTTVSSSVVLTRLAGGNVALALFNAVLSNLLGVFLTPLLLLL 145 (313)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHhhCCchhhHHHHHHHHcCCCHHHHHHHHHHHhhhhHhHHHHHHHH
Confidence 9999998877 3688889999999999998665 57999999999999999999999996666555443
No 11
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=97.00 E-value=0.017 Score=62.35 Aligned_cols=146 Identities=12% Similarity=0.129 Sum_probs=106.9
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHH--HHHHhHHHHHHHHHhh----hcc--ccc-hhhhcch
Q 036474 491 IMVWRKLIRNPNTYSSVLGLIWSLVSYRWHIKMPTIMSGSIS--ILSDAGLGMAMFSLGL----FMA--LQP-KIIACGK 561 (646)
Q Consensus 491 ~~vlkkllkNP~IiAiilGLilsll~~r~gI~LP~~L~~tL~--~Lg~aa~PLALf~LG~----sLa--~~~-~~~~~~~ 561 (646)
...+.|.+.--+++++++|+.+... .|. +.+.++ ..++...|++.-.+=+ .+. ..+ +....+.
T Consensus 9 l~~~dk~l~~wv~l~i~~Gi~lG~~-------~p~-~~~~l~~~~~~~~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~ 80 (342)
T COG0798 9 LSFLDKYLTLWVFLAIAIGILLGVH-------FPG-LAQLLGKLEFGGVSIPIAIGLILMMYPPMLKIDFEELKNVFKDP 80 (342)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhc-------ccc-hhhhcccceeCceehhHHHHHHHHHhHHHhcCCHHHHHHHHhcc
Confidence 3567777777789999999988765 665 444444 4445555554333221 111 111 1124557
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh-CCChHHHHHHHHHhccchhhHHHHHHHHcCCChhHHHHHHHHHHHHHHHHH-HH
Q 036474 562 SVATFAMAVRFLTGPAVIAATSIAI-GLRGVLLHIAIVQAALPQGIVPFVFAKEYNVHPDILSTAVIFGMLIALPIT-IL 639 (646)
Q Consensus 562 k~v~~~vliKLIv~PLLa~ll~~l~-gL~~~~~~vlVL~AAmP~Av~~~V~A~~Yg~d~elASsaVllSTLLSLpl~-i~ 639 (646)
|..+..++.-.++.|++++.+++++ +.-++...-+++....|+-.++.+..+.-+.|.|.+...|.+..++.+.+. ++
T Consensus 81 k~L~lsL~~Nwii~P~lm~~la~~fl~~~pey~~GlILlglApC~aMVivw~~La~Gd~~~tlv~Va~n~l~qiv~y~~~ 160 (342)
T COG0798 81 KPLILSLFVNWIIGPLLMFALAWFFLPDEPEYRAGLILLGLAPCIAMVIVWSGLAKGDRELTLVLVAFNSLLQIVLYAPL 160 (342)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhhhHHHHHHHHhhccCcHhhhhHHHHHHHHHHHHHHHHH
Confidence 7888899999999999999998754 666789999999999999999999999999999999999999999996665 44
Q ss_pred HHHHh
Q 036474 640 YYVLL 644 (646)
Q Consensus 640 l~~LL 644 (646)
.++++
T Consensus 161 ~~~~l 165 (342)
T COG0798 161 GKFFL 165 (342)
T ss_pred HHHHH
Confidence 44444
No 12
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=96.02 E-value=0.078 Score=55.95 Aligned_cols=139 Identities=8% Similarity=0.074 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccChhhhhHHHHHHHHHHHH---HHHHHHhhcC--CcccchhHHHHHHHHHHHH
Q 036474 7 IYDVLAAIVPLYVAMILAYGSVRWWKIFTPDQCSGINRFVAVFAVP---LLSFHFISLN--DPYAMNYHFIAADSLQKVV 81 (646)
Q Consensus 7 M~~IL~~ilPVFlLI~LGyla~R~~glfs~e~~~~LnrFV~~~ALP---ALLF~~lA~~--~l~~l~~~filay~l~~ll 81 (646)
+..++..+.-+++=+.+|.+++||. ++..+.+.+ .-.++.- ++++..++.. .+.+..+..+++..+-.++
T Consensus 133 ~~~i~~~~~~v~vPl~lG~~~r~~~----p~~~~~~~~-~~~~s~~~l~liv~~~~~~~~~~i~~~~~~~~~~~~ll~~~ 207 (286)
T TIGR00841 133 YLGIGLSLVAVLIPVSIGMLVKHKL----PQIAKIILK-VGLISVFLLSVIIAVVGGINVENLATIGPLLLLVGILLPLA 207 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHh-CchHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHH
Confidence 3343333555555567888888852 233333333 1122221 2222222211 1222244555555555667
Q ss_pred HHHHHHHHHHHHhcCCcchhHHhhhh-cccCcccccHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 036474 82 ILAALFLWQAFTKHGNLEWMITLFSL-STLPNTLVMGIPLLKAMYGDDSGSLMVQVVVLQSVIWYTLMLFMFE 153 (646)
Q Consensus 82 ~f~l~~l~ar~~~~~~~~~~aal~al-asfsNtgfmGiPLl~aLfG~eal~~l~livvv~~lil~~l~lvLmE 153 (646)
.|.++++++|.++.+..+. ...++ ++.-|++ +|+++....|+++.+.+...+.+.++++...++.+.-.
T Consensus 208 ~~~~g~~~a~~~~l~~~~~--~t~~~~~g~qN~~-lal~la~~~f~~~~a~~~~~~~v~~~~~~~~~a~~~~~ 277 (286)
T TIGR00841 208 GFLLGYLLAKLAGLPWARC--RTISIEVGMQNSQ-LCSTIAQLSFSPEVAVPSAIFPLIYALFQLAFALLFLI 277 (286)
T ss_pred HHHHHHHHHHHhCCCHhhh--eeeeeeeecccHH-HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777788887655432232 23355 8889999 99999999999888888888888888888887776543
No 13
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=95.88 E-value=0.28 Score=50.35 Aligned_cols=143 Identities=17% Similarity=0.126 Sum_probs=101.2
Q ss_pred HHHHHHHHHhhhHHHHHHHHH-HHHHHhhcCCCCCCHHHHHHHHHHHHhHHHHHHHHHhhhccccchhhhcchhHHHHHH
Q 036474 490 LIMVWRKLIRNPNTYSSVLGL-IWSLVSYRWHIKMPTIMSGSISILSDAGLGMAMFSLGLFMALQPKIIACGKSVATFAM 568 (646)
Q Consensus 490 l~~vlkkllkNP~IiAiilGL-ilsll~~r~gI~LP~~L~~tL~~Lg~aa~PLALf~LG~sLa~~~~~~~~~~k~v~~~v 568 (646)
+.+-+++.+.||+++++++=+ ++.++ |++..++. +.-+++... ..-+-.++++-|..+++..+++++.+...+
T Consensus 11 l~~r~~~~~l~P~l~a~~~ii~~L~~~----~i~y~~Y~-~gg~~l~~l-LgPatVALAvPLY~~~~~l~~~~~~il~~~ 84 (215)
T PF04172_consen 11 LYKRFKSPFLNPLLIAIVLIIAFLLLT----GIPYEDYM-QGGDILSFL-LGPATVALAVPLYRQRRLLKKNWIPILVGV 84 (215)
T ss_pred HHHHcCCCcccHHHHHHHHHHHHHHHH----CCCHHHHH-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456667799999888744 44555 66665544 445666544 444588999999988766778888888888
Q ss_pred HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHh-ccchhhHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHH
Q 036474 569 AVRFLTGPAVIAATSIAIGLRGVLLHIAIVQA-ALPQGIVPFVFAKEYNVHPDILSTAVIFGMLIALPITILYY 641 (646)
Q Consensus 569 liKLIv~PLLa~ll~~l~gL~~~~~~vlVL~A-AmP~Av~~~V~A~~Yg~d~elASsaVllSTLLSLpl~i~l~ 641 (646)
++=-++.-+..+.+.+++|++++....+.--+ ..|.|. -++++.|.++.+++..++++=++...+-.+++
T Consensus 85 ~~g~~~~~~~~~~l~~~lgl~~~~~~Sl~pkSVTtpiAi---~is~~iGG~~sLta~~VvitGi~Ga~~g~~ll 155 (215)
T PF04172_consen 85 LVGSLVSIFSAVLLARLLGLSPEIILSLAPKSVTTPIAI---EISEQIGGIPSLTAVFVVITGILGAVLGPPLL 155 (215)
T ss_pred HHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHhhHHHHH---HHHHHhCChHHHHHHHHHHHhhHHHHhHHHHH
Confidence 88888888888888999999987654443322 233333 56899999999999999998887754444433
No 14
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=95.68 E-value=0.52 Score=48.93 Aligned_cols=138 Identities=16% Similarity=0.096 Sum_probs=98.2
Q ss_pred HHHHhhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhHHHHHHHHHhhhccccchhhhcchhHHHHHHHHHHHH
Q 036474 495 RKLIRNPNTYSSVLGLIWSLVSYRWHIKMPTIMSGSISILSDAGLGMAMFSLGLFMALQPKIIACGKSVATFAMAVRFLT 574 (646)
Q Consensus 495 kkllkNP~IiAiilGLilsll~~r~gI~LP~~L~~tL~~Lg~aa~PLALf~LG~sLa~~~~~~~~~~k~v~~~vliKLIv 574 (646)
+..+.||+++++++-+.+-.. .+++-.++ .+.-+++...-. -|-.++++=|..+.+..++.++.+...+++=-++
T Consensus 32 ~~~~lnPll~s~~~ii~~L~~---~~i~Y~~Y-~~g~~~l~~lLg-PAtVALAvPLY~q~~~lk~~~~~Il~~~~vG~~~ 106 (232)
T PRK04288 32 GFFLFTPLFVAMVLGIAFLKL---TGISYEEY-NIGGDIISFFLE-PATIAFAIPLYKKRDVLKKYWWQILGGIVVGSVC 106 (232)
T ss_pred CCcchhHHHHHHHHHHHHHHH---hCCCHHHH-HhhhHHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 455679999988776665443 15555444 445555555533 3567888888888766778888888888888888
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHhccchhhHH---HHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 036474 575 GPAVIAATSIAIGLRGVLLHIAIVQAALPQGIVP---FVFAKEYNVHPDILSTAVIFGMLIALPITILYYV 642 (646)
Q Consensus 575 ~PLLa~ll~~l~gL~~~~~~vlVL~AAmP~Av~~---~V~A~~Yg~d~elASsaVllSTLLSLpl~i~l~~ 642 (646)
.-+..+.++.++|++++... +-+|=.++. .-++++.|..+..++..++++=++...+-.+++-
T Consensus 107 ~i~s~~~la~~lgl~~~~~~-----Sl~pKSVTtPIAm~is~~iGG~psLtA~~ViitGi~Gai~g~~llk 172 (232)
T PRK04288 107 SVLIIYLVAKLIQLDNAVMA-----SMLPQAATTAIALPVSAGIGGIKEITSFAVIFNAVIIYALGAKFLK 172 (232)
T ss_pred HHHHHHHHHHHHCcCHHHHH-----HHhhHhhhHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888999999997543 334443332 3579999999999999999998887555444433
No 15
>PRK10711 hypothetical protein; Provisional
Probab=95.65 E-value=0.28 Score=50.83 Aligned_cols=140 Identities=14% Similarity=0.070 Sum_probs=99.9
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhHHHHHHHHHhhhccccchhhhcchhHHHHHHHHHHH
Q 036474 494 WRKLIRNPNTYSSVLGLIWSLVSYRWHIKMPTIMSGSISILSDAGLGMAMFSLGLFMALQPKIIACGKSVATFAMAVRFL 573 (646)
Q Consensus 494 lkkllkNP~IiAiilGLilsll~~r~gI~LP~~L~~tL~~Lg~aa~PLALf~LG~sLa~~~~~~~~~~k~v~~~vliKLI 573 (646)
++..+.||+++++++-+++-.. .|++-.++ .+.-+++...-.| |-.++++-|..+.+..++.++.+...+++=-+
T Consensus 26 ~~~~~l~Pll~s~~~ii~~L~~---~~i~Y~~Y-~~g~~~l~~lLgP-AtVALAvPLY~q~~~lk~~~~~I~~~~~vG~~ 100 (231)
T PRK10711 26 FKFPLLNPLLVAMVVIIPFLLL---TGIPYEHY-FKGSEVLNDLLQP-AVVALAFPLYEQLHQIRARWKSIISICFIGSV 100 (231)
T ss_pred cCCCcccHHHHHHHHHHHHHHH---hCCCHHHH-HhccHHHHhhhhH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3666779999988766555443 15655554 4455666655444 66788889998876778888888888888888
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHhc-cchhhHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHH
Q 036474 574 TGPAVIAATSIAIGLRGVLLHIAIVQAA-LPQGIVPFVFAKEYNVHPDILSTAVIFGMLIALPITILYY 641 (646)
Q Consensus 574 v~PLLa~ll~~l~gL~~~~~~vlVL~AA-mP~Av~~~V~A~~Yg~d~elASsaVllSTLLSLpl~i~l~ 641 (646)
+.-+..+.++.++|++++....+.--+. .|.| .-++++.|.++.+++..++++=++...+-.+++
T Consensus 101 v~i~s~~~l~~~lg~~~~~~~Sl~pkSVTtPIA---m~is~~iGG~~sLta~~ViitGi~Ga~~g~~ll 166 (231)
T PRK10711 101 VAMVTGTAVALWMGATPEIAASILPKSVTTPIA---MAVGGSIGGIPAISAVCVIFVGILGAVFGHTLL 166 (231)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHhhhhhhHHHH---HHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888889999999999986544433322 3333 356899999999999999998887755444443
No 16
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=95.39 E-value=0.63 Score=48.18 Aligned_cols=139 Identities=14% Similarity=0.107 Sum_probs=96.5
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhHHHHHHHHHhhhccccchhhhcchhHHHHHHHHHHH
Q 036474 494 WRKLIRNPNTYSSVLGLIWSLVSYRWHIKMPTIMSGSISILSDAGLGMAMFSLGLFMALQPKIIACGKSVATFAMAVRFL 573 (646)
Q Consensus 494 lkkllkNP~IiAiilGLilsll~~r~gI~LP~~L~~tL~~Lg~aa~PLALf~LG~sLa~~~~~~~~~~k~v~~~vliKLI 573 (646)
++..+.||+++++++-+.+-.. .|++-.++ .+.-+++... ..-|..++++=|..+.+..++.+..+...+++=-+
T Consensus 25 ~~~~~lnPvl~~~~~ii~~L~~---~~i~Y~~Y-~~g~~~l~~l-LgPAtVALAvPLY~~~~~lk~~~~~Il~~~~~G~~ 99 (226)
T TIGR00659 25 FKRPYLNPLLLTPLVLVGILLL---VGIPYESY-MLGGGVINDL-LGPAVVALAIPLYKQLPQIKKYWKEIILNVAVGSV 99 (226)
T ss_pred cCCccccHHHHHHHHHHHHHHH---hCCCHHHH-HHhhHHHHHh-hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4677889999998876665443 15555454 4555555543 44467788888888876667788888777777777
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHh-ccchhhHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHH
Q 036474 574 TGPAVIAATSIAIGLRGVLLHIAIVQA-ALPQGIVPFVFAKEYNVHPDILSTAVIFGMLIALPITILY 640 (646)
Q Consensus 574 v~PLLa~ll~~l~gL~~~~~~vlVL~A-AmP~Av~~~V~A~~Yg~d~elASsaVllSTLLSLpl~i~l 640 (646)
+.-+..+.+.+++|++++....+.--+ ..|.| .-.+++.|.++..++..++++=++...+-..+
T Consensus 100 ~~~~s~~~la~~lg~~~~i~~Sl~pkSvTtpiA---m~vs~~iGG~~sLta~~vvitGi~Ga~~g~~l 164 (226)
T TIGR00659 100 IAIISGTLLALLLGLGPEIIASLLPKSVTTPIA---MHVSEMIGGIPAVTAVFVILTGLLGTVFGPMV 164 (226)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHhhhHHhhHHHH---HHHHHHhCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888888899999987554332222 12222 34689999999999999999888774444333
No 17
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=95.02 E-value=0.68 Score=47.94 Aligned_cols=137 Identities=15% Similarity=0.074 Sum_probs=100.1
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhHHHHHHHHHhhhccccchhhhcchhHHHHHHH
Q 036474 490 LIMVWRKLIRNPNTYSSVLGLIWSLVSYRWHIKMPTIMSGSISILSDAGLGMAMFSLGLFMALQPKIIACGKSVATFAMA 569 (646)
Q Consensus 490 l~~vlkkllkNP~IiAiilGLilsll~~r~gI~LP~~L~~tL~~Lg~aa~PLALf~LG~sLa~~~~~~~~~~k~v~~~vl 569 (646)
+.+-.|+.+.||.++++++.+.+-.. .+++-.+ -...-+++-..-.| |-.++.+=|..+.+..++.|+.+...++
T Consensus 24 l~~r~~~~~l~PlLv~~~~li~~L~~---~~i~Y~~-Y~~g~~~i~~lLgP-AtVAlAvPLYkq~~~ik~~w~~I~~g~~ 98 (230)
T COG1346 24 LYKRTKSPFLNPLLVATVLLIAFLLL---FGISYED-YMKGGQWINFLLGP-ATVALAVPLYKQRHLIKRHWKPILAGVL 98 (230)
T ss_pred HHHhcCCcccchHHHHHHHHHHHHHH---cCCCHHH-HhcccHHHHHHHHH-HHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44556778889999999888777654 2555443 34444555555556 7788888888887677888998888888
Q ss_pred HHHHHHHHHHHHHHHHhCCChHHHHHHHHHhccchhhHHH---HHHHHcCCChhHHHHHHHHHHHHHHHH
Q 036474 570 VRFLTGPAVIAATSIAIGLRGVLLHIAIVQAALPQGIVPF---VFAKEYNVHPDILSTAVIFGMLIALPI 636 (646)
Q Consensus 570 iKLIv~PLLa~ll~~l~gL~~~~~~vlVL~AAmP~Av~~~---V~A~~Yg~d~elASsaVllSTLLSLpl 636 (646)
+=-++.=...+++.++||++++.. .+-+|-.+++. -.+++.|.-++.++..|+++=++.-.+
T Consensus 99 vGs~~ai~s~~llak~~g~~~~~~-----~Sl~PkSvTTpiAm~vs~~iGGip~ltav~Vi~tGi~Gavl 163 (230)
T COG1346 99 VGSVVAIISGVLLAKLFGLSPELI-----LSLLPKSVTTPIAMEVSESIGGIPALTAVFVILTGILGAVL 163 (230)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHH-----HHhcccccccHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH
Confidence 777777788888899999999854 44456544433 358999999999999998888876433
No 18
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=94.83 E-value=0.51 Score=50.73 Aligned_cols=142 Identities=15% Similarity=0.097 Sum_probs=90.5
Q ss_pred HhhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhHHHHHHHHHhhhccccchhhhcchhHHHHHHHHHHHHHHH
Q 036474 498 IRNPNTYSSVLGLIWSLVSYRWHIKMPTIMSGSISILSDAGLGMAMFSLGLFMALQPKIIACGKSVATFAMAVRFLTGPA 577 (646)
Q Consensus 498 lkNP~IiAiilGLilsll~~r~gI~LP~~L~~tL~~Lg~aa~PLALf~LG~sLa~~~~~~~~~~k~v~~~vliKLIv~PL 577 (646)
...++++|+++|++++-. -+..|+.+...++.-.+....++...+|..+.... .....++.+... .+=.++.=+
T Consensus 25 ~l~~~~~AillG~~i~n~----~~~~~~~~~~Gi~~~~k~~Lr~gIVLlG~~l~~~~-i~~~G~~~~~~~-~~~v~~~~~ 98 (305)
T PF03601_consen 25 GLGALLIAILLGMLIGNL----FFGLPARFKPGIKFSSKKLLRLGIVLLGFRLSFSD-ILALGWKGLLII-IIVVILTFL 98 (305)
T ss_pred CccHHHHHHHHHHHHhhh----ccCCcHHHHhHHHHHHHHHHHHHHHHHCccccHHH-HHHhCccHHHHH-HHHHHHHHH
Confidence 456789999999999832 25788999999999999999999999999999864 333344333333 333333334
Q ss_pred HHHHHH-HHhCCChHHHHHHHHHhccchhhHHHHHHHHcCCChhHHHHHHHHHHHHH---HHHHHHHHHHhc
Q 036474 578 VIAATS-IAIGLRGVLLHIAIVQAALPQGIVPFVFAKEYNVHPDILSTAVIFGMLIA---LPITILYYVLLG 645 (646)
Q Consensus 578 La~ll~-~l~gL~~~~~~vlVL~AAmP~Av~~~V~A~~Yg~d~elASsaVllSTLLS---Lpl~i~l~~LL~ 645 (646)
+.+.+. .++++|......+-.-.+.--+......+---+.++++.+.++..-+++. +.+.++++-.++
T Consensus 99 ~~~~lg~r~~~l~~~~~~Lia~GtsICG~SAi~A~a~~i~a~~~~~a~ava~V~lfg~vam~~~P~l~~~l~ 170 (305)
T PF03601_consen 99 LTYWLGRRLFGLDRKLAILIAAGTSICGASAIAATAPVIKAKEEDVAYAVATVFLFGTVAMFLYPLLGHALG 170 (305)
T ss_pred HHHHHHHHHhCCCHHHHHHHHhhcccchHHHHHHHcccccCCCCceeeeehHHHHHHHHHHHHHHHHHHHhC
Confidence 444455 88999977654433333333344444455555666666665555555544 455555554443
No 19
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=93.47 E-value=1 Score=48.70 Aligned_cols=113 Identities=16% Similarity=0.247 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCHHHH------HHHHHHHHhHHHHHHHHHhhhccccchhhhcchhHHHHHHHHHHHHH
Q 036474 502 NTYSSVLGLIWSLVSYRWHIKMPTIMS------GSISILSDAGLGMAMFSLGLFMALQPKIIACGKSVATFAMAVRFLTG 575 (646)
Q Consensus 502 ~IiAiilGLilsll~~r~gI~LP~~L~------~tL~~Lg~aa~PLALf~LG~sLa~~~~~~~~~~k~v~~~vliKLIv~ 575 (646)
+++-.++|.+++-+ .|..++ +.+-.=...-..+-+|+.|.++..+. .....|+-..+++.|+++.
T Consensus 15 mvVPLllgalinTf-------~P~~l~~iG~fT~al~~G~~~iig~~l~~~Ga~I~~k~--~~~~lkkg~~ll~~K~~~~ 85 (314)
T PF03812_consen 15 MVVPLLLGALINTF-------FPNALEIIGGFTTALFTGANPIIGVFLFCMGAQIDLKS--AGKVLKKGGVLLLVKFIIG 85 (314)
T ss_pred eHHHHHHHHHHHhc-------CCChhhccCcHHHHHHcchHHHHHHHHHHhccccchhh--hhHHHHhhhHHHHHHHHHH
Confidence 45666677777766 454433 22222234445667889999998853 3455677788899999999
Q ss_pred HHHHHHHHHHhCCChH------HHHHHHHHhccch--hhHHHHHHHHcCCChhHHH
Q 036474 576 PAVIAATSIAIGLRGV------LLHIAIVQAALPQ--GIVPFVFAKEYNVHPDILS 623 (646)
Q Consensus 576 PLLa~ll~~l~gL~~~------~~~vlVL~AAmP~--Av~~~V~A~~Yg~d~elAS 623 (646)
-++.+++.+++|.++. -...+.+.+||-. +..-.-+.++||-+.|..+
T Consensus 86 ~~lgl~~~~~fg~~Gi~~g~f~GlS~LAiiaa~~~~NggLY~aL~~~yGd~~D~gA 141 (314)
T PF03812_consen 86 ALLGLLVGKFFGPEGIQSGFFLGLSALAIIAAMTNSNGGLYLALMGQYGDEEDVGA 141 (314)
T ss_pred HHHHHHHHHHcCccccccccccchHHHHHHHHHhcCCHHHHHHHHHHhCCHHHhHH
Confidence 9999999999988763 3556666666654 3444556889998777654
No 20
>COG2855 Predicted membrane protein [Function unknown]
Probab=92.04 E-value=1.3 Score=48.34 Aligned_cols=138 Identities=19% Similarity=0.248 Sum_probs=90.1
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhHHHHHHHHHhhhccccchhhhcchhHHHHHHHHHHHHHHHHHH
Q 036474 501 PNTYSSVLGLIWSLVSYRWHIKMPTIMSGSISILSDAGLGMAMFSLGLFMALQPKIIACGKSVATFAMAVRFLTGPAVIA 580 (646)
Q Consensus 501 P~IiAiilGLilsll~~r~gI~LP~~L~~tL~~Lg~aa~PLALf~LG~sLa~~~~~~~~~~k~v~~~vliKLIv~PLLa~ 580 (646)
++++|+++|+++..+ .+.|+-....++.-.+.-...+...+|..+..+. ...-+.. .+....+-+...-++++
T Consensus 39 al~lAIllGi~l~~l-----~~~~~~~~~GI~fs~k~LLr~gIvLlG~~ltl~~-i~~~G~~-~v~~~~~~l~~t~~~~~ 111 (334)
T COG2855 39 ALTLAILLGILLGIL-----PQIPAQTSAGITFSSKKLLRLGIVLLGFRLTLSD-IADVGGS-GVLIIAITLSSTFLFAY 111 (334)
T ss_pred HHHHHHHHHHHHhcc-----ccchhhhccchhhhHHHHHHHHHHHHcceeeHHH-HHHcCcc-HHHHHHHHHHHHHHHHH
Confidence 899999999999954 4567778888888889999999999999999864 2222222 33344444455556666
Q ss_pred HHHHHhCCChHHHHHHHHHhccchhhHHHHHHHHcCCChhHHHHHHHHHHHHH---HHHHHHHHHHhc
Q 036474 581 ATSIAIGLRGVLLHIAIVQAALPQGIVPFVFAKEYNVHPDILSTAVIFGMLIA---LPITILYYVLLG 645 (646)
Q Consensus 581 ll~~l~gL~~~~~~vlVL~AAmP~Av~~~V~A~~Yg~d~elASsaVllSTLLS---Lpl~i~l~~LL~ 645 (646)
.+..++|+|.......=.-.+.--+......+-.-+.++++.+.+|..-++++ +.+.++++-+++
T Consensus 112 ~lg~~lgld~~~a~Lia~GssICGasAiaA~~pvika~~~eva~aIa~V~lfgtia~llyP~l~~~l~ 179 (334)
T COG2855 112 FLGKLLGLDKKLALLIAAGSSICGASAIAATAPVIKAEEEEVAVAIAVVVLFGTLAMLLYPLLYPLLG 179 (334)
T ss_pred HHHHHhCCCHHHHHHHHccchhhHHHHHHHhCCcCCCCccccceehhhHHHHHHHHHHHHHHHHHHhC
Confidence 66778899876542222222222244444445556777788777777777766 455555655554
No 21
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=91.97 E-value=5.3 Score=46.68 Aligned_cols=135 Identities=13% Similarity=0.083 Sum_probs=90.8
Q ss_pred hhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhHHHHHHHHHhhhccccchhhhcchhHHHHHHHHHHHHHHHH
Q 036474 499 RNPNTYSSVLGLIWSLVSYRWHIKMPTIMSGSISILSDAGLGMAMFSLGLFMALQPKIIACGKSVATFAMAVRFLTGPAV 578 (646)
Q Consensus 499 kNP~IiAiilGLilsll~~r~gI~LP~~L~~tL~~Lg~aa~PLALf~LG~sLa~~~~~~~~~~k~v~~~vliKLIv~PLL 578 (646)
.++.+-|+++|+++.-. +.-.-+...++.+.+...|+-.+.+|+.+.... ....+..++..++..+++-++.
T Consensus 237 ls~~LGAFlaGl~l~~s------~~~~~l~~~i~pf~~lll~lFFi~vGm~id~~~--l~~~~~~il~~~~~~l~~K~~~ 308 (601)
T PRK03659 237 LSMALGTFIAGVLLAES------EYRHELEIAIEPFKGLLLGLFFISVGMALNLGV--LYTHLLWVLISVVVLVAVKGLV 308 (601)
T ss_pred ccHHHHHHHHHHHhcCC------chHHHHHHHHHHHHHHHHHHHHHHHhhhccHHH--HHHhHHHHHHHHHHHHHHHHHH
Confidence 57888888999888743 334566777777888999999999999988742 2234444555556667777788
Q ss_pred HHHHHHHhCCChHHH-HHH-HHHhccchhhHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHH
Q 036474 579 IAATSIAIGLRGVLL-HIA-IVQAALPQGIVPFVFAKEYNVHPDILSTAVIFGMLIALPITILYY 641 (646)
Q Consensus 579 a~ll~~l~gL~~~~~-~vl-VL~AAmP~Av~~~V~A~~Yg~d~elASsaVllSTLLSLpl~i~l~ 641 (646)
+++...+++++.... .+. .+...-..+...+-+|.++|.=.+...+.+++.+++|+.+.++++
T Consensus 309 ~~~~~~~~g~~~~~al~~g~~L~~~Gef~~vl~~~a~~~g~i~~~~~~~lv~~v~ls~~~tP~l~ 373 (601)
T PRK03659 309 LYLLARLYGLRSSERMQFAGVLSQGGEFAFVLFSAASSQRLLQGDQMALLLVVVTLSMMTTPLLM 373 (601)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHhccccHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888875432 222 222333445555556788887777777777777777755555443
No 22
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=91.18 E-value=6.9 Score=45.96 Aligned_cols=133 Identities=11% Similarity=0.075 Sum_probs=86.3
Q ss_pred hhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhHHHHHHHHHhhhccccchhhhcchhHHHHHHHHHHHHHHHHH
Q 036474 500 NPNTYSSVLGLIWSLVSYRWHIKMPTIMSGSISILSDAGLGMAMFSLGLFMALQPKIIACGKSVATFAMAVRFLTGPAVI 579 (646)
Q Consensus 500 NP~IiAiilGLilsll~~r~gI~LP~~L~~tL~~Lg~aa~PLALf~LG~sLa~~~~~~~~~~k~v~~~vliKLIv~PLLa 579 (646)
++.+=|+++|+++.-. +.-.-+++.++.+.+...|+-.+.+|+.+.... ....+..++..++..+++-++.+
T Consensus 241 s~~lGAFlAGl~l~~~------~~~~~le~~i~pf~~lll~lFFi~vG~~id~~~--l~~~~~~il~~~~~~~~~K~~~~ 312 (621)
T PRK03562 241 SMALGAFLAGVLLASS------EYRHALESDIEPFKGLLLGLFFIAVGMSIDFGT--LLENPLRILILLLGFLAIKIAML 312 (621)
T ss_pred cHHHHHHHHHHHhcCC------ccHHHHHHHHHHHHHHHHHHHHHHhhhhccHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777888777633 334567777777788889999999999998742 22233344455556677777888
Q ss_pred HHHHHHhCCChHHH-H-HHHHHhccchhhHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHH
Q 036474 580 AATSIAIGLRGVLL-H-IAIVQAALPQGIVPFVFAKEYNVHPDILSTAVIFGMLIALPITILY 640 (646)
Q Consensus 580 ~ll~~l~gL~~~~~-~-vlVL~AAmP~Av~~~V~A~~Yg~d~elASsaVllSTLLSLpl~i~l 640 (646)
++.+.+++++.... . .+.+...-..+...+-+|.++|.=.+...+.+++.+++|+.+.+++
T Consensus 313 ~~~~~~~g~~~~~a~~~gl~L~~~Gef~~vl~~~a~~~~~i~~~~~~~lv~~v~lS~~~tP~l 375 (621)
T PRK03562 313 WLLARPLGVPRKQRRWFAVLLGQGGEFAFVVFGAAQMANVLEPEWAKLLTLAVALSMAATPLL 375 (621)
T ss_pred HHHHHHhCCCHhHHHHHHHHHhccccHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888864432 2 2222223444555666677777666666666667777775555444
No 23
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=90.32 E-value=9 Score=42.53 Aligned_cols=139 Identities=12% Similarity=0.107 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccChhhhhHHHHHHHHHHHHHHHHHHhhcCCcccc---hhHHHHHHHHHHHHHHHHH
Q 036474 10 VLAAIVPLYVAMILAYGSVRWWKIFTPDQCSGINRFVAVFAVPLLSFHFISLNDPYAM---NYHFIAADSLQKVVILAAL 86 (646)
Q Consensus 10 IL~~ilPVFlLI~LGyla~R~~glfs~e~~~~LnrFV~~~ALPALLF~~lA~~~l~~l---~~~filay~l~~ll~f~l~ 86 (646)
.+..+-|+.+.+++|.++.-. |+++......+-.+|..+.+|+.++--+.+.|+.++ .++.+++|+++.+.+.+..
T Consensus 21 ~f~~l~~~vl~~~~~~~lsnl-gli~~p~~s~~y~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l~~F~~~~~g~viG~ 99 (378)
T PF05684_consen 21 FFKYLPGAVLCYLLGMLLSNL-GLIDSPASSPVYDFVWTYLVPLAIPLLLLSADLRRILRLGGRLLLAFLIGAVGTVIGA 99 (378)
T ss_pred hHhhcCHHHHHHHHHHHHHHC-CCcCCCCcchHHHHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 345666888999999999995 999655566788999999999999999999999983 7788888888877555432
Q ss_pred HHHHHHHhcC--Ccchh-HHhh-hh--cccCcccccHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHHHHHHHhc
Q 036474 87 FLWQAFTKHG--NLEWM-ITLF-SL--STLPNTLVMGIPLLKAMYGDDSGSLMVQVVVLQSVIWYTLMLFMFEYR 155 (646)
Q Consensus 87 ~l~ar~~~~~--~~~~~-aal~-al--asfsNtgfmGiPLl~aLfG~eal~~l~livvv~~lil~~l~lvLmE~~ 155 (646)
.+-...+... +..|. .+.+ +- .+-.|..-++ ..++-.. ..+...+++||++...-..+++-..
T Consensus 100 ~va~~l~~~~l~~~~wk~ag~l~gsyiGGs~N~~Av~-----~al~~~~-~~~~a~~aaDnv~~~~~~~~l~~l~ 168 (378)
T PF05684_consen 100 VVAFLLFGGFLGPEGWKIAGMLAGSYIGGSVNFVAVA-----EALGVSD-SLFAAALAADNVVMALWFAFLLALP 168 (378)
T ss_pred HHHHHHHhhcccchHHHHHHHHHhcccCchhHHHHHH-----HHHCCCH-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2212222221 22332 2222 21 2234544333 3456543 4677778888887666666665553
No 24
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=89.12 E-value=3.8 Score=44.79 Aligned_cols=142 Identities=7% Similarity=-0.011 Sum_probs=77.2
Q ss_pred hhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhHHHHHHHHHhhhccccchhhhcchhHHHHHHHHHHHHHHHH
Q 036474 499 RNPNTYSSVLGLIWSLVSYRWHIKMPTIMSGSISILSDAGLGMAMFSLGLFMALQPKIIACGKSVATFAMAVRFLTGPAV 578 (646)
Q Consensus 499 kNP~IiAiilGLilsll~~r~gI~LP~~L~~tL~~Lg~aa~PLALf~LG~sLa~~~~~~~~~~k~v~~~vliKLIv~PLL 578 (646)
.+++++|+++|++++-+ ...+.|+.....++.-.+...-++...+|..+.... ...-..+.+.. ..+=.+..=++
T Consensus 31 l~~~~~AillG~~l~n~---~~~~~~~~~~~Gi~f~~k~lLr~gIVLlG~~l~~~~-i~~~G~~~l~~-~~~~v~~~~~~ 105 (335)
T TIGR00698 31 LSALFLAILLGMVAGNT---IYPQRDEEKKRGVLFAKPFLLRIGITLYGFRLTFPY-IADVGPNEIVA-DTLILTSTFFL 105 (335)
T ss_pred CcHHHHHHHHHHHHhcc---ccccchhhccchHHHHHHHHHHHHHHHHCccccHHH-HHHhhHHHHHH-HHHHHHHHHHH
Confidence 56788999999988743 012467777788888888999999999999999864 22233332222 22222222222
Q ss_pred HHHHH-HHhCCChHHHHHHHHHhccchhhHHHHHHHHcCCChhHHHHHHHHHHH---HHHHHHHHHHHHhc
Q 036474 579 IAATS-IAIGLRGVLLHIAIVQAALPQGIVPFVFAKEYNVHPDILSTAVIFGML---IALPITILYYVLLG 645 (646)
Q Consensus 579 a~ll~-~l~gL~~~~~~vlVL~AAmP~Av~~~V~A~~Yg~d~elASsaVllSTL---LSLpl~i~l~~LL~ 645 (646)
++.+. ..+++|......+-.-.+.--+....-.+.--+.++++.+.++..-++ +++.+.++++-+++
T Consensus 106 ~~~~g~k~l~l~~~~~~Lia~GtsICGaSAi~A~a~~i~A~~~~~a~ava~V~lfgt~am~l~P~l~~~l~ 176 (335)
T TIGR00698 106 TVFLGSSRLKLDKQMSILLGAGSSICGAAAVAAIEPVIKAEKEKVSVAIAIVVIFGTTGIFLYPSIYHYAS 176 (335)
T ss_pred HHHHHHHHhCCChhHHHHHHcchhHHHHHHHHHhccccCCCccceeeeehHHHHHHHHHHHHHHHHHHHHc
Confidence 23333 578898765422222122222222333333444555554444333333 44555555555543
No 25
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=87.93 E-value=30 Score=35.78 Aligned_cols=94 Identities=16% Similarity=0.204 Sum_probs=57.2
Q ss_pred HHHHHHHHHHhhhHHHHH-HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhHHHHHHHHHhhhccccchhhhcchhHHHHH
Q 036474 489 ILIMVWRKLIRNPNTYSS-VLGLIWSLVSYRWHIKMPTIMSGSISILSDAGLGMAMFSLGLFMALQPKIIACGKSVATFA 567 (646)
Q Consensus 489 il~~vlkkllkNP~IiAi-ilGLilsll~~r~gI~LP~~L~~tL~~Lg~aa~PLALf~LG~sLa~~~~~~~~~~k~v~~~ 567 (646)
+...+.|+ ++-|.+.+. ++|+++.-..+ |+--+. +.++.++..+..+-||..|+.+..+ ..++..+.....
T Consensus 6 ~~~~l~~~-l~lP~~v~~il~GillGp~~l--g~i~~~---~~~~~l~~igl~~llF~~Gl~~d~~--~l~~~~~~~~~~ 77 (273)
T TIGR00932 6 LAVPLSRR-LGIPSVLGYLLAGVLIGPSGL--GLISNV---EGVNHLAEFGVILLMFLIGLELDLE--RLWKLRKAAFGV 77 (273)
T ss_pred HHHHHHHH-hCCCHHHHHHHHHHHhCcccc--cCCCCh---HHHHHHHHHHHHHHHHHHHhCCCHH--HHHHHHHHHHHH
Confidence 34456666 567765554 55777764300 321122 4688899999999999999999875 234455566666
Q ss_pred HHHHHHHHH-HHH-HHHHHHhCCChH
Q 036474 568 MAVRFLTGP-AVI-AATSIAIGLRGV 591 (646)
Q Consensus 568 vliKLIv~P-LLa-~ll~~l~gL~~~ 591 (646)
.+.-++ .| ++. +.+.++++++..
T Consensus 78 ~~~~~~-~~~~~~~~~~~~~~~~~~~ 102 (273)
T TIGR00932 78 GVLQVL-VPGVLLGLLLGHLLGLALG 102 (273)
T ss_pred HHHHHH-HHHHHHHHHHHHHHCCCHH
Confidence 655554 45 332 224556776543
No 26
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=86.77 E-value=21 Score=38.48 Aligned_cols=133 Identities=13% Similarity=0.197 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHhccccChhhhhHHHHHHHHHHHHHHHHHHhhcC---Cc-ccchhHHHHHHH-HHHHHH---HHHHHH
Q 036474 17 LYVAMILAYGSVRWWKIFTPDQCSGINRFVAVFAVPLLSFHFISLN---DP-YAMNYHFIAADS-LQKVVI---LAALFL 88 (646)
Q Consensus 17 VFlLI~LGyla~R~~glfs~e~~~~LnrFV~~~ALPALLF~~lA~~---~l-~~l~~~filay~-l~~ll~---f~l~~l 88 (646)
+++=+.+|-+++||.+..-+. .+..-+.+-..++-.+++.++++. +. +++++.-++... ++..+. +.+.+.
T Consensus 167 vllP~~~Gq~~r~~~~~~~~~-~~~~~~~~~~~~ll~iv~~~fs~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 245 (313)
T PF13593_consen 167 VLLPLVLGQLLRRWVPKWVAR-HKKPLSLLSQLALLLIVYSAFSSAFAQGAWHSVSAAALALIVAVSLLLLLVVLVLGWL 245 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333345677777652222222 244455556677777777776654 22 234443222222 222111 222334
Q ss_pred HHHHHhcCCcchhHHhhhhcccCcccccHHHHHHHhhcCC-hhhHHHHHHHHHHHHHHHHHHHHH
Q 036474 89 WQAFTKHGNLEWMITLFSLSTLPNTLVMGIPLLKAMYGDD-SGSLMVQVVVLQSVIWYTLMLFMF 152 (646)
Q Consensus 89 ~ar~~~~~~~~~~aal~alasfsNtgfmGiPLl~aLfG~e-al~~l~livvv~~lil~~l~lvLm 152 (646)
++|.++.++.|. .++ .+|+--.+.-+|+|++..+|++. ....+.+=.++...++.-++-++.
T Consensus 246 ~~r~~~~~~~d~-iA~-~F~gs~Ksl~~gvpl~~~lf~~~~~~~~~~lP~~iyh~~Ql~~~s~la 308 (313)
T PF13593_consen 246 AARLLGFSRPDR-IAV-LFCGSQKSLALGVPLASILFPGHPDLGLIVLPLMIYHPLQLFVGSFLA 308 (313)
T ss_pred HHhhcCCChhhE-EEE-EEEcCcCcchhHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHH
Confidence 455544333342 121 22566899999999999999874 233333333344444444444443
No 27
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=86.53 E-value=24 Score=40.65 Aligned_cols=135 Identities=10% Similarity=0.045 Sum_probs=84.8
Q ss_pred hhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhHHHHHHHHHhhhccccchhhhcchhHHHHHHHHHHHHHHHH
Q 036474 499 RNPNTYSSVLGLIWSLVSYRWHIKMPTIMSGSISILSDAGLGMAMFSLGLFMALQPKIIACGKSVATFAMAVRFLTGPAV 578 (646)
Q Consensus 499 kNP~IiAiilGLilsll~~r~gI~LP~~L~~tL~~Lg~aa~PLALf~LG~sLa~~~~~~~~~~k~v~~~vliKLIv~PLL 578 (646)
.++.+-|+++|++++-. +....+.+...-+.+...|+-.+.+|+.+.... . ...+..++..+++.++.-++.
T Consensus 248 ls~~lGAflaGl~l~~~------~~~~~~~~~~~~~~~~f~plFFv~~G~~~d~~~-l-~~~~~~~~~~~~~~~v~K~~~ 319 (558)
T PRK10669 248 VSFALGAFFAGMVLNES------ELSHRAAHDTLPLRDAFAVLFFVSVGMLFDPMI-L-IQQPLAVLATLAIIVFGKSLA 319 (558)
T ss_pred ccHHHHHHHHHHHHhCC------hhHHHHHHHHhhHHHHHHHHHHHHhhhhcCHHH-H-HHHHHHHHHHHHHHHHHHHHH
Confidence 36888888999887633 223334433444567789999999999988642 1 122223344455566666677
Q ss_pred HHHHHHHhCCChH--HHHHHHHHhccchhhHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHH
Q 036474 579 IAATSIAIGLRGV--LLHIAIVQAALPQGIVPFVFAKEYNVHPDILSTAVIFGMLIALPITILYY 641 (646)
Q Consensus 579 a~ll~~l~gL~~~--~~~vlVL~AAmP~Av~~~V~A~~Yg~d~elASsaVllSTLLSLpl~i~l~ 641 (646)
++..+.+++.+.. +...+.+..--..+...+.++.++|.=.+..-+.+++.++++..+.++++
T Consensus 320 ~~~~~~~~g~~~~~a~~~gl~l~~~Gef~lii~~~~~~~gii~~~~~~~~v~~~~~t~~~~P~l~ 384 (558)
T PRK10669 320 AFFLVRLFGHSRRTALTIAASLAQIGEFAFILAGLGMALNLLPQAGQNLVLAGAILSIMLNPVLF 384 (558)
T ss_pred HHHHHHHhCCChhhHHHHHHHHhcccchHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777776532 22222222235566677777888888777777888888888865555543
No 28
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=84.89 E-value=6 Score=42.94 Aligned_cols=81 Identities=16% Similarity=0.200 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhHHHHHHHHHhhhccccchhhhcchhHHHHHHHHHHHHHHHHHHH
Q 036474 502 NTYSSVLGLIWSLVSYRWHIKMPTIMSGSISILSDAGLGMAMFSLGLFMALQPKIIACGKSVATFAMAVRFLTGPAVIAA 581 (646)
Q Consensus 502 ~IiAiilGLilsll~~r~gI~LP~~L~~tL~~Lg~aa~PLALf~LG~sLa~~~~~~~~~~k~v~~~vliKLIv~PLLa~l 581 (646)
.++++++|+++.-+ .-.+|+.+...... .+|+.-|.+|..+..+. .....+.-++..+++=.+ .=.+.+.
T Consensus 169 lilpILiGmilGNl----d~~~~~~l~~Gi~f----~I~f~~f~LG~~lnl~~-I~~~G~~GIlL~v~vv~~-t~~~~~~ 238 (312)
T PRK12460 169 ALLPLVLGMILGNL----DPDMRKFLTKGGPL----LIPFFAFALGAGINLSM-LLQAGLAGILLGVLVTIV-TGFFNIF 238 (312)
T ss_pred HHHHHHHHHHHhcc----chhhHHHHhccceE----eHHHHHHHhcCCeeHHH-HHHhChHHHHHHHHHHHH-HHHHHHH
Confidence 67788888888655 33466777666665 88999999999999864 334445444443333333 3344444
Q ss_pred HHHHhCCChHH
Q 036474 582 TSIAIGLRGVL 592 (646)
Q Consensus 582 l~~l~gL~~~~ 592 (646)
+..+++.++..
T Consensus 239 i~rllg~~~~~ 249 (312)
T PRK12460 239 ADRLVGGTGIA 249 (312)
T ss_pred HHHHhCCChhH
Confidence 45777887665
No 29
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=84.77 E-value=4.9 Score=44.22 Aligned_cols=98 Identities=11% Similarity=0.059 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHhccccChh---hhhHHHHHHHHHHHHHHHH-HHhhcCCcccc----hhHHHHHHHHHHHHHHHHHHH
Q 036474 17 LYVAMILAYGSVRWWKIFTPD---QCSGINRFVAVFAVPLLSF-HFISLNDPYAM----NYHFIAADSLQKVVILAALFL 88 (646)
Q Consensus 17 VFlLI~LGyla~R~~glfs~e---~~~~LnrFV~~~ALPALLF-~~lA~~~l~~l----~~~filay~l~~ll~f~l~~l 88 (646)
...+|.+|.++... |+++++ .++..++|+.+...+++++ -.++.+|++++ .+.++.....+.+.+.+..++
T Consensus 207 ~v~mII~~vi~k~~-gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~~~vviiv~~Vlg~ii~s~l 285 (347)
T TIGR00783 207 YAFMILIAAALKAF-GLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSWQFVVICLSVVVAMILGGAF 285 (347)
T ss_pred HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhchhHhhhHHHHHHHHHHHHHH
Confidence 55678889999884 999975 4667777888877777777 57888999883 578888777777777777788
Q ss_pred HHHHHhcCCcchhHHhh-hh--cccCcccccH
Q 036474 89 WQAFTKHGNLEWMITLF-SL--STLPNTLVMG 117 (646)
Q Consensus 89 ~ar~~~~~~~~~~aal~-al--asfsNtgfmG 117 (646)
++|+++--+.|. ++- ++ +..+-||-++
T Consensus 286 vGKllG~YPiE~--aItagLC~~~~GGtGDva 315 (347)
T TIGR00783 286 LGKLMGMYPVES--AITAGLCNSGMGGTGDVA 315 (347)
T ss_pred HHHHhCCChHHH--HHHHhhhccCCCCCCcee
Confidence 899988878884 333 33 5555565554
No 30
>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]
Probab=84.29 E-value=1.2 Score=49.13 Aligned_cols=108 Identities=17% Similarity=0.166 Sum_probs=76.6
Q ss_pred hHHHHHHHHHhhhccccchh-hhcchhHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHH-hccchhhHHHHHHHH
Q 036474 537 AGLGMAMFSLGLFMALQPKI-IACGKSVATFAMAVRFLTGPAVIAATSIAIGLRGVLLHIAIVQ-AALPQGIVPFVFAKE 614 (646)
Q Consensus 537 aa~PLALf~LG~sLa~~~~~-~~~~~k~v~~~vliKLIv~PLLa~ll~~l~gL~~~~~~vlVL~-AAmP~Av~~~V~A~~ 614 (646)
...-.-++++|+.+...... ....-.......+.+++++|+..+.+...+.++..+...+++. +..|.+.-+++.+..
T Consensus 117 ~gl~~~~ls~g~~~~~~~~~~~~~rP~~~~lG~v~q~~i~pl~~f~~~~~~~lP~~~~ag~~Lvtc~~p~g~~~~~~~~~ 196 (371)
T KOG2718|consen 117 PGLLSNMLSFGIKLDMDLFAGMIKRPTPLALGFVPQYLIMPLLGFLLSKVLLLPAALAAGLLLVTCVSPGGGGNYLTSKR 196 (371)
T ss_pred cHHHHHHHHHhcCccHHHHhhHhhCCcceeehHHHHHHHHHHHHHhhhhHhhCCccccceeEEEEeccCCcchhhheeec
Confidence 44556788889888775311 1122233455566699999999999988888888774444444 445566777777766
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHh
Q 036474 615 YNVHPDILSTAVIFGMLIALPITILYYVLL 644 (646)
Q Consensus 615 Yg~d~elASsaVllSTLLSLpl~i~l~~LL 644 (646)
-+.|...+..+..++|+.++.+++.+-.++
T Consensus 197 ~~g~v~lsilmT~~stv~avi~~pl~s~~l 226 (371)
T KOG2718|consen 197 LPGDVTLSILMTTISTVLAVILTPLLSILL 226 (371)
T ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 688988888888999999887777776655
No 31
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=83.02 E-value=26 Score=42.70 Aligned_cols=93 Identities=18% Similarity=0.134 Sum_probs=57.3
Q ss_pred HHHHH-HHHhhhHHHHHHHHHHHHHHhhcCCCCCCHHHH-----HHHHHHHHhHHHHHHHHHhhhccccchhhhcchhHH
Q 036474 491 IMVWR-KLIRNPNTYSSVLGLIWSLVSYRWHIKMPTIMS-----GSISILSDAGLGMAMFSLGLFMALQPKIIACGKSVA 564 (646)
Q Consensus 491 ~~vlk-kllkNP~IiAiilGLilsll~~r~gI~LP~~L~-----~tL~~Lg~aa~PLALf~LG~sLa~~~~~~~~~~k~v 564 (646)
...++ ++-..-+++.+++|+++... ++.+..+.. ..+-.+...+..+.||..|+.|... ..+..|+.+
T Consensus 29 s~~lkeRl~Ls~~~v~Ll~GiilGP~----~l~~idP~~~g~~d~i~leIteIvL~I~LFa~Gl~L~~~--~Lrr~wrsV 102 (810)
T TIGR00844 29 SLFVKEKLYIGESMVASIFGLIVGPH----CLNWFNPLSWGNTDSITLEISRILLCLQVFAVSVELPRK--YMLKHWVSV 102 (810)
T ss_pred HHHHHhhcCCcHHHHHHHHHHHhhhh----hhccCChhhcccchHHHHHHHHHHHHHHHHHHHHhCCHH--HHHHhHHHH
Confidence 33444 44445678899999998876 444443332 2233388899999999999999874 345566666
Q ss_pred HHHHHHHHHHHHHHHHHHHH-H-hCCC
Q 036474 565 TFAMAVRFLTGPAVIAATSI-A-IGLR 589 (646)
Q Consensus 565 ~~~vliKLIv~PLLa~ll~~-l-~gL~ 589 (646)
+.++++=+.+.=+++.++.+ + +|++
T Consensus 103 ~rLl~~~M~lT~livAL~a~~Li~GL~ 129 (810)
T TIGR00844 103 TMLLVPVMTSGWLVIALFVWILVPGLN 129 (810)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 55555444444444444433 3 3665
No 32
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=78.93 E-value=8.1 Score=41.98 Aligned_cols=85 Identities=13% Similarity=0.092 Sum_probs=59.3
Q ss_pred hHHHHHHHHHhhhccccchhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhCCChH-HHHHHHHHhccchhhHHHH---HH
Q 036474 537 AGLGMAMFSLGLFMALQPKIIACGKSVATFAMAVRFLTGPAVIAATSIAIGLRGV-LLHIAIVQAALPQGIVPFV---FA 612 (646)
Q Consensus 537 aa~PLALf~LG~sLa~~~~~~~~~~k~v~~~vliKLIv~PLLa~ll~~l~gL~~~-~~~vlVL~AAmP~Av~~~V---~A 612 (646)
.-..+-+|++|.++..+. .....++-..+++.|+++.-++.+++..++|.++. -...+.+.+||=- .|.-+ +.
T Consensus 49 ~il~~~~~~~Ga~I~~k~--~~~~l~kg~~l~~~K~~~~~~~g~~~~~~~g~~g~~Gls~laiiaa~~~-~Ng~ly~al~ 125 (312)
T PRK12460 49 PLLGAFLLCMGAQISLKA--APQALLKGGVLTITKLGVAIVIGLLVGKFFGAEGIFGLSGLAIVAAMSN-SNGGLYAALM 125 (312)
T ss_pred HHHHHHHHHhcCeeeccc--cchhhhhhhhhhhHHHHHHHHHHHHHHHHcCcccccchHHHHHHHHHhc-CcHHHHHHHH
Confidence 345566889999998753 23445666778889999999999999999987765 2445555566543 33333 48
Q ss_pred HHcCCChhHHHH
Q 036474 613 KEYNVHPDILST 624 (646)
Q Consensus 613 ~~Yg~d~elASs 624 (646)
.|||-++|..+.
T Consensus 126 ~~yG~~~d~gA~ 137 (312)
T PRK12460 126 GEFGDERDVGAI 137 (312)
T ss_pred HHcCCHhhhhHH
Confidence 999987776643
No 33
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=78.54 E-value=52 Score=38.85 Aligned_cols=117 Identities=15% Similarity=0.148 Sum_probs=68.2
Q ss_pred HHHHHHHHHhhhHHHHHHH-HHHHHHHhhcCCCCCCHHHHHHHHHHHHhHHHHHHHHHhhhccccchhhhcchhHHHHHH
Q 036474 490 LIMVWRKLIRNPNTYSSVL-GLIWSLVSYRWHIKMPTIMSGSISILSDAGLGMAMFSLGLFMALQPKIIACGKSVATFAM 568 (646)
Q Consensus 490 l~~vlkkllkNP~IiAiil-GLilsll~~r~gI~LP~~L~~tL~~Lg~aa~PLALf~LG~sLa~~~~~~~~~~k~v~~~v 568 (646)
+..+.|+ ++.|.+++.++ |+++.-. ++.+-. -.+.+..++.....+-||.+|+.+.... .+...+.++...
T Consensus 20 ~~~l~~r-l~lp~vlgyilaGillGP~----~lg~i~-~~~~i~~laelGvv~LlF~iGLEl~~~~--l~~~~~~~~~~g 91 (621)
T PRK03562 20 IVPIAVR-LGLGSVLGYLIAGCIIGPW----GLRLVT-DVESILHFAEFGVVLMLFVIGLELDPQR--LWKLRRSIFGGG 91 (621)
T ss_pred HHHHHHH-hCCChHHHHHHHHHHhCcc----cccCCC-CHHHHHHHHHHHHHHHHHHHHhCcCHHH--HHHHHHHHHHHH
Confidence 3344555 68888887754 6666543 222211 1245778999999999999999998753 233344455555
Q ss_pred HHHHHHHHHHHHHHHHHhCCChHHHH-HHHHHhccchhhHHHHHHHH
Q 036474 569 AVRFLTGPAVIAATSIAIGLRGVLLH-IAIVQAALPQGIVPFVFAKE 614 (646)
Q Consensus 569 liKLIv~PLLa~ll~~l~gL~~~~~~-vlVL~AAmP~Av~~~V~A~~ 614 (646)
..-+++.-++.+.+.+++|++..... +...++...+++..-++.++
T Consensus 92 ~~qv~~~~~~~~~~~~~~g~~~~~al~ig~~la~SStaiv~~~L~e~ 138 (621)
T PRK03562 92 ALQMVACGGLLGLFCMLLGLRWQVALLIGLGLALSSTAIAMQAMNER 138 (621)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555544455555667777654322 22333334456655566554
No 34
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=76.69 E-value=37 Score=37.11 Aligned_cols=127 Identities=14% Similarity=0.138 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHhccccChhhhhHHHHHH---HHHHHHHHHHHHhhcCCcccchhHH--HHHHHHHHHHHHHHHHHHHH
Q 036474 17 LYVAMILAYGSVRWWKIFTPDQCSGINRFV---AVFAVPLLSFHFISLNDPYAMNYHF--IAADSLQKVVILAALFLWQA 91 (646)
Q Consensus 17 VFlLI~LGyla~R~~glfs~e~~~~LnrFV---~~~ALPALLF~~lA~~~l~~l~~~f--ilay~l~~ll~f~l~~l~ar 91 (646)
+++=+.+|-+++++ -++..+.+.+.+ -..++=+.++...+..-.......+ +++..+-.++.|.++++.+|
T Consensus 170 vllP~~LG~~~r~~----~~~~~~~~~~~l~~vs~~~illIv~~~~s~~~~~~~~~~~~v~~~v~~~n~lg~~~gy~~ar 245 (319)
T COG0385 170 VLLPFVLGQLLRPL----LPKWVERLKKALPPVSVLSILLIVYAAFSAAVENGIWSGLLIFVAVILHNLLGLLLGYFGAR 245 (319)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334567777765 334444444433 3344444445444433222223332 22223333455666777788
Q ss_pred HHhcCCcchhHHhhhh-cccCcccccHHHHHHHhhc-CChhhHHHHHHHHHHHHHHHHHHH
Q 036474 92 FTKHGNLEWMITLFSL-STLPNTLVMGIPLLKAMYG-DDSGSLMVQVVVLQSVIWYTLMLF 150 (646)
Q Consensus 92 ~~~~~~~~~~aal~al-asfsNtgfmGiPLl~aLfG-~eal~~l~livvv~~lil~~l~lv 150 (646)
+++.+..|. .+ .++ ++.-|.+ .|+|+...-++ +..+.|.++....|++..--++-.
T Consensus 246 ~~g~~~a~~-it-i~ie~g~qn~~-lg~alA~~f~~~~~~alP~aif~~~q~~~~a~la~~ 303 (319)
T COG0385 246 LLGFDKADE-IT-IAIEGGMQNLG-LGAALAAAFFGNPLMALPLAIFSVWQNMSGAVLAGL 303 (319)
T ss_pred HhCCChhhe-ee-EEEeeccccHH-HHHHHHHhcCCCchhHhHHHHHHHHHHHHHHHHHHH
Confidence 776543332 22 233 5556654 79999999556 566777777777777665444433
No 35
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=76.08 E-value=6.1 Score=42.79 Aligned_cols=85 Identities=16% Similarity=0.103 Sum_probs=57.7
Q ss_pred HHHHHHHHHhhhccccchhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhCCCh-----H-HHHHHHHHhccch--hhHHH
Q 036474 538 GLGMAMFSLGLFMALQPKIIACGKSVATFAMAVRFLTGPAVIAATSIAIGLRG-----V-LLHIAIVQAALPQ--GIVPF 609 (646)
Q Consensus 538 a~PLALf~LG~sLa~~~~~~~~~~k~v~~~vliKLIv~PLLa~ll~~l~gL~~-----~-~~~vlVL~AAmP~--Av~~~ 609 (646)
-..+-+|++|.++..+. .....++-..+++.|+++.-++.+++..++|.++ . -...+.+.+||=- +..-.
T Consensus 50 il~~~l~~~Ga~I~~k~--~g~~l~kg~~l~~~K~~i~~~~g~~~~~~~g~~Gi~~g~~~GlS~LAiiaA~~nsNggLY~ 127 (314)
T TIGR00793 50 ILAVWFFCMGASIDLSA--TGTVLRKSGTLVVTKIAVAWVVAAIASRIIPEDGVEVGFFAGLSTLALVAAMDMTNGGLYA 127 (314)
T ss_pred HHHHHHHHhCCeeeecc--cchhhhhcceeeeHHHHHHHHHHHHHHHHcCcCCccccceeccHHHHHHHHHhCCcHHHHH
Confidence 34556889999998753 2234555666778899999999999999998776 2 3445556666543 22233
Q ss_pred HHHHHcCCChhHHHH
Q 036474 610 VFAKEYNVHPDILST 624 (646)
Q Consensus 610 V~A~~Yg~d~elASs 624 (646)
-+..|||-++|..+.
T Consensus 128 aL~~qyGd~~D~gA~ 142 (314)
T TIGR00793 128 SIMQQYGTKEEAGAF 142 (314)
T ss_pred HHHHHcCCHhhhhhh
Confidence 348999987776643
No 36
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=75.50 E-value=81 Score=30.50 Aligned_cols=121 Identities=12% Similarity=0.104 Sum_probs=64.6
Q ss_pred HHHhhh--HHH-HHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhHHHHHHHHHhhhccccc-hhhhcchhHHHHHHHHH
Q 036474 496 KLIRNP--NTY-SSVLGLIWSLVSYRWHIKMPTIMSGSISILSDAGLGMAMFSLGLFMALQP-KIIACGKSVATFAMAVR 571 (646)
Q Consensus 496 kllkNP--~Ii-AiilGLilsll~~r~gI~LP~~L~~tL~~Lg~aa~PLALf~LG~sLa~~~-~~~~~~~k~v~~~vliK 571 (646)
+.++-| .++ +++++.+++.. ....+++|..+.+..+.+-+. .+|..+.... +...+.+...+..+++=
T Consensus 15 ~~l~~Pa~~llG~mi~~~~~~~~-~~~~~~~P~~~~~~~qviiG~-------~iG~~f~~~~l~~~~~~~~~~l~~~~~~ 86 (156)
T TIGR03082 15 SLLGLPAAWLLGPLLAGAVLSLA-GGLEITLPPWLLALAQVVIGI-------LIGSRFTREVLAELKRLWPAALLSTVLL 86 (156)
T ss_pred HHHCCCcHHHHHHHHHHHHHHhc-CCccCCCCHHHHHHHHHHHHH-------HHHccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 345665 344 44445555555 111356888766655544332 3455555432 01112222223333333
Q ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHhccchhhHH-HHHHHHcCCChhHHHHHHHH
Q 036474 572 FLTGPAVIAATSIAIGLRGVLLHIAIVQAALPQGIVP-FVFAKEYNVHPDILSTAVIF 628 (646)
Q Consensus 572 LIv~PLLa~ll~~l~gL~~~~~~vlVL~AAmP~Av~~-~V~A~~Yg~d~elASsaVll 628 (646)
+++.=+..+.+.++.++|... .+.+.+|-|... .++|+++|.|+...+..=.+
T Consensus 87 l~~~~~~~~~l~~~~~~~~~t----a~La~~PGGl~~m~~~A~~~gad~~~V~~~q~~ 140 (156)
T TIGR03082 87 LALSALLAWLLARLTGVDPLT----AFLATSPGGASEMAALAAELGADVAFVAAMQTL 140 (156)
T ss_pred HHHHHHHHHHHHHHHCCCHHH----HHHHhCCchHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 334444445555666777654 467899986654 46799999999888655443
No 37
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=75.14 E-value=36 Score=37.50 Aligned_cols=146 Identities=12% Similarity=0.067 Sum_probs=78.2
Q ss_pred CChHHHHH--HHHHHHHHHHHHHHHHHHHHhccccChhhhhHHHHHHHHHHHHHHHHHHhhcCCc--ccc--hhH---HH
Q 036474 2 ITGKDIYD--VLAAIVPLYVAMILAYGSVRWWKIFTPDQCSGINRFVAVFAVPLLSFHFISLNDP--YAM--NYH---FI 72 (646)
Q Consensus 2 i~~~dM~~--IL~~ilPVFlLI~LGyla~R~~glfs~e~~~~LnrFV~~~ALPALLF~~lA~~~l--~~l--~~~---fi 72 (646)
|+|++... ++-..+|+.+-++.=|...|+ +-- +-..+.+-..+--++++++++.-+.--.. +.+ ++. .+
T Consensus 172 v~~~~i~~Sv~lyl~iPli~G~lTR~i~~k~-kg~-~~~~~~f~p~ispi~ligLl~TivliF~~qg~~Iv~~p~~i~li 249 (342)
T COG0798 172 VPFWTIAKSVLLYLGIPLIAGVLTRYILIKK-KGR-EWYESRFLPKISPIALIGLLLTIVLIFAFQGEQIVEQPLDILLI 249 (342)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccc-hHHHHHHHhhcChHHHHHHHHHHHHHHHHhHHHHHhChHHHHHH
Confidence 45566544 555677877777777777774 211 11234444445556677777654331111 111 111 11
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHhcCCcchhHHhhhhcccCcccccHHHHHHHhhc-CChhhHHHHHHHHHHHHHHHHHHH
Q 036474 73 -AADSLQKVVILAALFLWQAFTKHGNLEWMITLFSLSTLPNTLVMGIPLLKAMYG-DDSGSLMVQVVVLQSVIWYTLMLF 150 (646)
Q Consensus 73 -lay~l~~ll~f~l~~l~ar~~~~~~~~~~aal~alasfsNtgfmGiPLl~aLfG-~eal~~l~livvv~~lil~~l~lv 150 (646)
..+.+-..+.|.+.++++|..+-. .+. ++-.++.+-+|..=+.+++..++|| +++. ++..++..++-.|+.+.
T Consensus 250 AIpl~iy~~~~~~i~~~i~k~lgl~-y~~-~~~~~ft~aSNnfeLAiAvAi~lfG~~s~a---A~a~vigpLvEVpvml~ 324 (342)
T COG0798 250 AIPLLIYFLLMFFISYFIAKALGLP-YED-AAALVFTGASNNFELAIAVAIALFGLTSGA---ALATVVGPLVEVPVMLG 324 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCC-hhh-hhceeeeeccccHHHHHHHHHHhcCccccc---hhhhhccchhhHHHHHH
Confidence 123333445666667777765542 322 3444555679999999999999999 4433 22233344444444444
Q ss_pred HHHh
Q 036474 151 MFEY 154 (646)
Q Consensus 151 LmE~ 154 (646)
+...
T Consensus 325 lV~v 328 (342)
T COG0798 325 LVKV 328 (342)
T ss_pred HHHH
Confidence 4443
No 38
>PRK05326 potassium/proton antiporter; Reviewed
Probab=74.54 E-value=56 Score=37.80 Aligned_cols=94 Identities=12% Similarity=0.063 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhhhHHHHH-HHHHHHHHHhhcCCCC-CCHHHHHHHHHHHHhHHHHHHHHHhhhccccchhhhcchhHHHH
Q 036474 489 ILIMVWRKLIRNPNTYSS-VLGLIWSLVSYRWHIK-MPTIMSGSISILSDAGLGMAMFSLGLFMALQPKIIACGKSVATF 566 (646)
Q Consensus 489 il~~vlkkllkNP~IiAi-ilGLilsll~~r~gI~-LP~~L~~tL~~Lg~aa~PLALf~LG~sLa~~~~~~~~~~k~v~~ 566 (646)
++....++ ++-|.+++. ++|+++.-. ++. ++..-.+..+.++..+.++.||..|+.+.... .+...+.++.
T Consensus 20 ~~~~l~~r-~~~P~ll~~il~GillGp~----~lg~i~~~~~~~~~~i~~l~L~~iLF~~Gl~~~~~~--l~~~~~~~~~ 92 (562)
T PRK05326 20 LASRLSSR-LGIPSLLLFLAIGMLAGED----GLGGIQFDNYPLAYLVGNLALAVILFDGGLRTRWSS--FRPALGPALS 92 (562)
T ss_pred HHHHHHHH-cCCcHHHHHHHHHHHhCcc----ccCCcccCcHHHHHHHHHHHHHHHHHcCccCCCHHH--HHHHHHHHHH
Confidence 34445555 467765554 567777654 332 11111356788999999999999999988752 3445555555
Q ss_pred HHHHHHHHHHHHH--HHHHHHhCCCh
Q 036474 567 AMAVRFLTGPAVI--AATSIAIGLRG 590 (646)
Q Consensus 567 ~vliKLIv~PLLa--~ll~~l~gL~~ 590 (646)
...+-.++ |.+. +...++++++.
T Consensus 93 la~~gv~~-t~~~~g~~~~~l~g~~~ 117 (562)
T PRK05326 93 LATLGVLI-TAGLTGLFAHWLLGLDW 117 (562)
T ss_pred HHHHHHHH-HHHHHHHHHHHHhcCCH
Confidence 54544333 4333 23345677754
No 39
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=73.57 E-value=88 Score=38.36 Aligned_cols=85 Identities=19% Similarity=0.248 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhhhHHHHH-HHHHHHHHHhhcCCCC-------CCHHHHHHHHHHHHhHHHHHHHHHhhhccccchhhhcc
Q 036474 489 ILIMVWRKLIRNPNTYSS-VLGLIWSLVSYRWHIK-------MPTIMSGSISILSDAGLGMAMFSLGLFMALQPKIIACG 560 (646)
Q Consensus 489 il~~vlkkllkNP~IiAi-ilGLilsll~~r~gI~-------LP~~L~~tL~~Lg~aa~PLALf~LG~sLa~~~~~~~~~ 560 (646)
.+..++++ ++-|.+++- ++|+++.-..+ |.- +|.--...++.++....-+-||.+|+-+.... .++.
T Consensus 57 l~~~ll~r-l~~P~ivgeIlaGIlLGPs~l--g~i~~~~~~~fp~~~~~~l~~la~lGlillmFliGLE~Dl~~--lr~~ 131 (832)
T PLN03159 57 LLVFILKP-FRQPRVISEILGGVILGPSVL--GQSEVFANTIFPLRSVMVLETMANLGLLYFLFLVGVEMDISV--IRRT 131 (832)
T ss_pred HHHHHHHh-cCCChhHHHHHHHHhcCHhhh--CcChhhhhhcCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHH--HHhc
Confidence 34445555 578877775 45666653311 221 23323347899999999999999999998752 3344
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 036474 561 KSVATFAMAVRFLTGPAVI 579 (646)
Q Consensus 561 ~k~v~~~vliKLIv~PLLa 579 (646)
.+..+...+.-+ +.|++.
T Consensus 132 ~k~a~~ia~~~~-ilpf~l 149 (832)
T PLN03159 132 GKKALAIAIAGM-ALPFCI 149 (832)
T ss_pred chHHHHHHHHHH-HHHHHH
Confidence 455555444444 445543
No 40
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=72.59 E-value=1.1e+02 Score=35.43 Aligned_cols=117 Identities=15% Similarity=0.173 Sum_probs=62.6
Q ss_pred HHHHHHHHHHhhhHHHHH-HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhHHHHHHHHHhhhccccchhhhcchhHHHHH
Q 036474 489 ILIMVWRKLIRNPNTYSS-VLGLIWSLVSYRWHIKMPTIMSGSISILSDAGLGMAMFSLGLFMALQPKIIACGKSVATFA 567 (646)
Q Consensus 489 il~~vlkkllkNP~IiAi-ilGLilsll~~r~gI~LP~~L~~tL~~Lg~aa~PLALf~LG~sLa~~~~~~~~~~k~v~~~ 567 (646)
.+..+.|+ ++.|.+++- ++|+++.-..+ |+ ++. ...++.++..+.-+-||.+|+.+.... .+...+.....
T Consensus 20 ~~~~l~~r-l~~P~ivg~IlaGillGp~~l--g~-~~~--~~~~~~la~lGli~llF~~Gle~d~~~--l~~~~~~~~~~ 91 (558)
T PRK10669 20 ILGMLANR-LRISPLVGYLLAGVLAGPFTP--GF-VAD--TKLAPELAELGVILLMFGVGLHFSLKD--LMAVKSIAIPG 91 (558)
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHhhCcccc--cc-ccc--hHHHHHHHHHHHHHHHHHhHhcCCHHH--HHHHhhHHHHH
Confidence 33445555 678877775 45666543300 22 111 246788999999999999999998753 22222333333
Q ss_pred HHHHHHHHHHHHHHHHHHhCCChHHH-HHHHHHhccchhhHHHHHHH
Q 036474 568 MAVRFLTGPAVIAATSIAIGLRGVLL-HIAIVQAALPQGIVPFVFAK 613 (646)
Q Consensus 568 vliKLIv~PLLa~ll~~l~gL~~~~~-~vlVL~AAmP~Av~~~V~A~ 613 (646)
.+.-+++.-++.+++.+.++.+.... ...+.++...+++..-++.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~al~lg~~ls~tS~~vv~~~L~e 138 (558)
T PRK10669 92 AIAQIAVATLLGMALSAVLGWSLMTGIVFGLCLSTASTVVLLRALEE 138 (558)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44454444444455556677653222 22223333334444444443
No 41
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=69.40 E-value=29 Score=37.72 Aligned_cols=116 Identities=16% Similarity=0.075 Sum_probs=74.7
Q ss_pred HHHH-HHHHHHHHhHHHHHHHHHhhhccccchhhhcchhHHH---HHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHh
Q 036474 525 TIMS-GSISILSDAGLGMAMFSLGLFMALQPKIIACGKSVAT---FAMAVRFLTGPAVIAATSIAIGLRGVLLHIAIVQA 600 (646)
Q Consensus 525 ~~L~-~tL~~Lg~aa~PLALf~LG~sLa~~~~~~~~~~k~v~---~~vliKLIv~PLLa~ll~~l~gL~~~~~~vlVL~A 600 (646)
+... +....++..+....++.+-.......+........+. ..+++=+++.-.+.+.+..+++++....+++.+..
T Consensus 205 ~~~~~~~~~~~~~~~~l~l~~iv~~~~~~~~~~i~~~~~~i~~~~~~v~l~~~~~~~lg~~~~r~~~l~~~~~~a~~~e~ 284 (328)
T TIGR00832 205 EWYEKVFLPKISPWSLIALLFTIVLLFAFQGETIIELPLDIALIAIPLLIYFYIMFFLTFALAKKLGLPYSITAPAAFTG 284 (328)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChhhhhhheehh
Confidence 3444 4444555555444444444444433222223322222 23445566667777777788999999999999999
Q ss_pred ccchhhHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHH
Q 036474 601 ALPQGIVPFVFAKEYNVHPDILSTAVIFGMLIALPITILY 640 (646)
Q Consensus 601 AmP~Av~~~V~A~~Yg~d~elASsaVllSTLLSLpl~i~l 640 (646)
++=-+..+..+|..+=.+.+.++...++..++=+|.+..+
T Consensus 285 g~qN~~lai~lA~~~f~~~~~~a~~~~~~~l~e~~~~~~~ 324 (328)
T TIGR00832 285 ASNNFELAIAVAISLFGLNSGAALATVVGPLIEVPVMLSL 324 (328)
T ss_pred hhhhHHHHHHHHHHhCCCCcccHHHHHhhhhhehhhhhee
Confidence 9988888888888875556788888888888777776554
No 42
>COG3329 Predicted permease [General function prediction only]
Probab=69.24 E-value=1.9e+02 Score=31.98 Aligned_cols=62 Identities=13% Similarity=0.125 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhHHHHHHHHHhhhcccc
Q 036474 489 ILIMVWRKLIRNPNTYSSVLGLIWSLVSYRWHIKMPTIMSGSISILSDAGLGMAMFSLGLFMALQ 553 (646)
Q Consensus 489 il~~vlkkllkNP~IiAiilGLilsll~~r~gI~LP~~L~~tL~~Lg~aa~PLALf~LG~sLa~~ 553 (646)
..|.+++..+.||-+...+.|+++.++ .|-+--..++.+.+-+=+...-+-|+.+|+.-.++
T Consensus 206 ~~~ell~Esflnpal~lllggl~iGli---tGe~g~~vl~~F~~~lFqGvL~lflL~MGm~A~rr 267 (372)
T COG3329 206 KIWELLQESFLNPALVLLLGGLAIGLI---TGEQGESVLKPFFDPLFQGVLCLFLLDMGMTAGRR 267 (372)
T ss_pred hhHHHHHHHHcCchHHHHHHHHHHhhe---eccCchhhhhhhhHHHHHHHHHHHHHHHhHHHHHH
Confidence 357889999999999999999999987 23343345666777777788888888899876653
No 43
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=68.88 E-value=1.4e+02 Score=35.12 Aligned_cols=113 Identities=13% Similarity=0.065 Sum_probs=63.6
Q ss_pred HHHHHHhhhHHHHHH-HHHHHHHHhhcCCCCC-CHHHHHHHHHHHHhHHHHHHHHHhhhccccchhhhcchhHHHHHHHH
Q 036474 493 VWRKLIRNPNTYSSV-LGLIWSLVSYRWHIKM-PTIMSGSISILSDAGLGMAMFSLGLFMALQPKIIACGKSVATFAMAV 570 (646)
Q Consensus 493 vlkkllkNP~IiAii-lGLilsll~~r~gI~L-P~~L~~tL~~Lg~aa~PLALf~LG~sLa~~~~~~~~~~k~v~~~vli 570 (646)
+.++ ++-|.+++.+ +|+++.-. ++.+ +. .+.+..++..+..+-||.+|+.+.... .+...+.+......
T Consensus 23 l~~r-l~~p~ilg~ilaGillGP~----~lg~i~~--~~~i~~laelGvv~LLF~iGLel~~~~--l~~~~~~~~~~g~~ 93 (601)
T PRK03659 23 LAQR-LGIGAVLGYLLAGIAIGPW----GLGFISD--VDEILHFSELGVVFLMFIIGLELNPSK--LWQLRRSIFGVGAA 93 (601)
T ss_pred HHHH-hCCChHHHHHHHHHHhccc----cccCCCc--HHHHHHHHHHHHHHHHHHHHhcCCHHH--HHHHHHHHHHHHHH
Confidence 4455 6778777764 46666533 2221 21 134668899999999999999998753 22333444444455
Q ss_pred HHHHHHHHHHHHHHHhCCChHHHH-HHHHHhccchhhHHHHHHHH
Q 036474 571 RFLTGPAVIAATSIAIGLRGVLLH-IAIVQAALPQGIVPFVFAKE 614 (646)
Q Consensus 571 KLIv~PLLa~ll~~l~gL~~~~~~-vlVL~AAmP~Av~~~V~A~~ 614 (646)
-+++.-++...+.+++|++..... +.+..+...+++..-++.++
T Consensus 94 ~v~~t~~~~~~~~~~~g~~~~~a~~~g~~la~SSTaiv~~iL~e~ 138 (601)
T PRK03659 94 QVLLSAAVLAGLLMLTDFSWQAAVVGGIGLAMSSTAMALQLMREK 138 (601)
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 544433344444556677643222 22333445556655666554
No 44
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=67.73 E-value=1.2e+02 Score=33.74 Aligned_cols=132 Identities=17% Similarity=0.212 Sum_probs=76.6
Q ss_pred HHHHHHHhhhHHHHHHH-HHHHHHHhhcCCCCCCHHHHHHHHHHHHhHHHHHHHHHhhhccccchhhhcchhHHHHHHHH
Q 036474 492 MVWRKLIRNPNTYSSVL-GLIWSLVSYRWHIKMPTIMSGSISILSDAGLGMAMFSLGLFMALQPKIIACGKSVATFAMAV 570 (646)
Q Consensus 492 ~vlkkllkNP~IiAiil-GLilsll~~r~gI~LP~~L~~tL~~Lg~aa~PLALf~LG~sLa~~~~~~~~~~k~v~~~vli 570 (646)
...++ ++-|.+++.++ |+++.-. ++-.+..-.+.++.++....-+-||.+|+-..... .++..+.+......
T Consensus 23 ~l~~r-l~lp~vlg~llaGiilGp~----~~~~~~~~~~~i~~laelGvi~LlF~~GLE~~~~~--l~~~~~~~~~~~~~ 95 (397)
T COG0475 23 PLFKR-LGLPPVLGYLLAGIILGPW----GLLLIIESSEIIELLAELGVVFLLFLIGLEFDLER--LKKVGRSVGLGVAQ 95 (397)
T ss_pred HHHHH-cCCchHHHHHHHHHhcCcc----cccccCCchHHHHHHHHHhHHHHHHHHHHCcCHHH--HHHhchhhhhhHHH
Confidence 34444 67888888665 4444422 34445556788889999999999999999998753 22333332444555
Q ss_pred HHHHHHHHHHHHH-H-HhCCChHHHHHH-HHHhccchhhHHHHHHHHcCCChhHHHHHHHHHHH
Q 036474 571 RFLTGPAVIAATS-I-AIGLRGVLLHIA-IVQAALPQGIVPFVFAKEYNVHPDILSTAVIFGML 631 (646)
Q Consensus 571 KLIv~PLLa~ll~-~-l~gL~~~~~~vl-VL~AAmP~Av~~~V~A~~Yg~d~elASsaVllSTL 631 (646)
-.+..|.+..... . .+|++....-.+ ..++..-+++..-++. ++|.......+.++...+
T Consensus 96 ~~~~~~~~l~~~~~~~~~g~~~~~al~lg~~l~~sS~~i~~~iL~-e~~~~~~~~g~~~l~~~i 158 (397)
T COG0475 96 VGLTAPFLLGLLLLLGILGLSLIAALFLGAALALSSTAIVLKILM-ELGLLKTREGQLILGALV 158 (397)
T ss_pred HHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHH-HhccccchHHHHHHHHHH
Confidence 5566664444322 2 477776543333 3333333455555554 555555555555444444
No 45
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=66.08 E-value=2e+02 Score=31.18 Aligned_cols=120 Identities=14% Similarity=0.151 Sum_probs=65.1
Q ss_pred hHHHHHHH-HHHHHHHhhcCCCCCCHHHHHHHHHHHHhHHHHHHHHHhhhccccc-hhhhcchhHHHHHHHHHHHHHHHH
Q 036474 501 PNTYSSVL-GLIWSLVSYRWHIKMPTIMSGSISILSDAGLGMAMFSLGLFMALQP-KIIACGKSVATFAMAVRFLTGPAV 578 (646)
Q Consensus 501 P~IiAiil-GLilsll~~r~gI~LP~~L~~tL~~Lg~aa~PLALf~LG~sLa~~~-~~~~~~~k~v~~~vliKLIv~PLL 578 (646)
|.+++.++ +.+++.+ ......+|.++....+.+-++ .+|..+.... +..++.....+...+.=+.+.=++
T Consensus 179 ~~llGpml~~a~~~~~-~~~~~~~P~~l~~~aqv~iG~-------~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~ 250 (318)
T PF05145_consen 179 PWLLGPMLVSAILNLF-GGPSFSLPPWLVNAAQVLIGA-------SIGSRFTRETLRELRRLLPPALLSTLLLLALCALF 250 (318)
T ss_pred HHHHHHHHHHHHHHHH-hCCCCCCCHHHHHHHHHHHHH-------HHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444 4444444 111467888666555544333 3555555432 111112222223333334444455
Q ss_pred HHHHHHHhCCChHHHHHHHHHhccchhhHHH-HHHHHcCCChhHHHHHHHHHHHH
Q 036474 579 IAATSIAIGLRGVLLHIAIVQAALPQGIVPF-VFAKEYNVHPDILSTAVIFGMLI 632 (646)
Q Consensus 579 a~ll~~l~gL~~~~~~vlVL~AAmP~Av~~~-V~A~~Yg~d~elASsaVllSTLL 632 (646)
++++.++.++|... .+++..|-+.... ++|...|.|+...++.=++=.++
T Consensus 251 a~~l~~~~~~~~~t----~~La~aPGGl~eM~l~A~~l~~d~~~V~~~q~~Rl~~ 301 (318)
T PF05145_consen 251 AWLLSRLTGIDFLT----ALLATAPGGLAEMALIALALGADVAFVAAHQVVRLLF 301 (318)
T ss_pred HHHHHHHHCCCHHH----HHHHhCCccHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 55556667777654 6788899977654 45999999998887655444433
No 46
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=64.32 E-value=44 Score=37.80 Aligned_cols=90 Identities=10% Similarity=0.025 Sum_probs=63.3
Q ss_pred HHHHhccccCh---hhhhHHHHHHHHHHHHHHHHH-HhhcCCcccc----hhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 036474 26 GSVRWWKIFTP---DQCSGINRFVAVFAVPLLSFH-FISLNDPYAM----NYHFIAADSLQKVVILAALFLWQAFTKHGN 97 (646)
Q Consensus 26 la~R~~glfs~---e~~~~LnrFV~~~ALPALLF~-~lA~~~l~~l----~~~filay~l~~ll~f~l~~l~ar~~~~~~ 97 (646)
...|..+++++ +.++.+.+|+.+--.|++++- .++-+|++++ ++.++.......+.+.+..++++|+++--+
T Consensus 282 ~i~K~~~lvP~~~e~~a~~~~~f~~~~lt~~lLvgiGv~~~~l~~l~~a~t~~~vv~~~~~Vl~~~~~a~~vG~l~g~YP 361 (414)
T PF03390_consen 282 AIVKAFGLVPESLEEGAKQWYKFFSKNLTWPLLVGIGVAYTDLNDLIAAFTPQYVVIVLATVLGAVIGAFLVGKLVGFYP 361 (414)
T ss_pred HHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCh
Confidence 33343588885 468889999999888888884 6777999983 888887776666666666677888888778
Q ss_pred cchhHHhhhh--cccCccccc
Q 036474 98 LEWMITLFSL--STLPNTLVM 116 (646)
Q Consensus 98 ~~~~aal~al--asfsNtgfm 116 (646)
.|. +-..++ +..+-||-+
T Consensus 362 vEs-AItaGLC~an~GGtGDv 381 (414)
T PF03390_consen 362 VES-AITAGLCMANMGGTGDV 381 (414)
T ss_pred HHH-HHHhhhcccCCCCCCcc
Confidence 884 233343 455555554
No 47
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=59.17 E-value=1.1e+02 Score=33.57 Aligned_cols=135 Identities=13% Similarity=-0.000 Sum_probs=70.4
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhHHHHHHHHHhhhccccchhhhcchhHHHHHHH
Q 036474 490 LIMVWRKLIRNPNTYSSVLGLIWSLVSYRWHIKMPTIMSGSISILSDAGLGMAMFSLGLFMALQPKIIACGKSVATFAMA 569 (646)
Q Consensus 490 l~~vlkkllkNP~IiAiilGLilsll~~r~gI~LP~~L~~tL~~Lg~aa~PLALf~LG~sLa~~~~~~~~~~k~v~~~vl 569 (646)
.+++++..++|+-++..+.|++..+...+-+++- ++.....+=+.. +++|.+-+.+.--++. ..+|+...-.+
T Consensus 167 ~~~~l~E~l~~~sv~LLlGgliIG~~~g~~g~~~---i~pf~~~lF~G~--L~lFLLeMGl~A~~rL--~~l~~~g~~li 239 (327)
T PF05982_consen 167 WGELLHESLTNKSVVLLLGGLIIGFLAGPEGVES---IKPFFVDLFKGV--LCLFLLEMGLVAARRL--RDLRKVGWFLI 239 (327)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHhheeCccchhh---ccchhhccHHHH--HHHHHHHhhHHHHHhh--HHHHhhhHHHH
Confidence 4678999999999999999999998743223322 222222222233 4555555544433222 22333333333
Q ss_pred HHHHHHHHHH----HHHHHHhCCChHHHHHHHHHhccchhhHHHHHHHHcCCChhHHHHHHHHHHHH
Q 036474 570 VRFLTGPAVI----AATSIAIGLRGVLLHIAIVQAALPQGIVPFVFAKEYNVHPDILSTAVIFGMLI 632 (646)
Q Consensus 570 iKLIv~PLLa----~ll~~l~gL~~~~~~vlVL~AAmP~Av~~~V~A~~Yg~d~elASsaVllSTLL 632 (646)
.==+++|++. +.+.+++|++.--...+.+++|.-.=+.+.- |.|.-..+...+-.+..|.-+
T Consensus 240 ~Fgi~~Pli~a~ig~~lg~~~gls~Gg~~llavLaASASYIAvPA-AmR~AiPeAnpslyl~~SLgi 305 (327)
T PF05982_consen 240 AFGILMPLINALIGIGLGWLLGLSPGGAVLLAVLAASASYIAVPA-AMRAAIPEANPSLYLTASLGI 305 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHhhHhhhhhhH-HHHhhCcccCchHHHHHHHhc
Confidence 3335566654 3445667887655555555544333222222 556655544444444444433
No 48
>KOG4821 consensus Predicted Na+-dependent cotransporter [General function prediction only]
Probab=57.15 E-value=22 Score=37.01 Aligned_cols=94 Identities=15% Similarity=0.209 Sum_probs=61.5
Q ss_pred HHHHhhhccccch-hhhcchhHHHHHHHHHHHHHHHHHHHHHHHh---CCChHHHHHHHHHhccchhhHHHH-HHHHcCC
Q 036474 543 MFSLGLFMALQPK-IIACGKSVATFAMAVRFLTGPAVIAATSIAI---GLRGVLLHIAIVQAALPQGIVPFV-FAKEYNV 617 (646)
Q Consensus 543 Lf~LG~sLa~~~~-~~~~~~k~v~~~vliKLIv~PLLa~ll~~l~---gL~~~~~~vlVL~AAmP~Av~~~V-~A~~Yg~ 617 (646)
.|.-|+.|..... .-..+|+.-+...+.-+++.|...|+++.+. +.+.....-+.+.++||+-+.+.+ +...-|.
T Consensus 64 F~~SGL~LkTE~l~aA~~~w~LhLFilI~~Ll~tPs~~~Lf~~~~~~~~i~~wLl~GL~~~~CMPttvSS~ViLT~~aGG 143 (287)
T KOG4821|consen 64 FLQSGLGLKTESLMAAMLNWRLHLFILILSLLITPSIVYLFCCAVKAAKIDDWLLIGLILTACMPTTVSSNVILTTNAGG 143 (287)
T ss_pred EeecCccccHHHHHHHHhCCchHHHHHHHHHHHhHHHHHHHHHHHhCcchhHHHHhhheeeeecCCccccceeeeeccCc
Confidence 3444555543210 0124567777788888999999999987654 356678888999999999776655 4555555
Q ss_pred ChhHHHHHHHHHHHHHHHHHHH
Q 036474 618 HPDILSTAVIFGMLIALPITIL 639 (646)
Q Consensus 618 d~elASsaVllSTLLSLpl~i~ 639 (646)
++ ++..+.|.++++.+..|
T Consensus 144 Na---~A~~v~S~f~g~L~~~~ 162 (287)
T KOG4821|consen 144 NA---SALCVCSVFIGNLLGAF 162 (287)
T ss_pred cH---HHHHHHHHHHHHHhhhH
Confidence 54 55666666666444433
No 49
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=51.15 E-value=3.9e+02 Score=29.83 Aligned_cols=129 Identities=14% Similarity=0.066 Sum_probs=77.0
Q ss_pred hhhHHHHHHHHHHHHHHhhcCCCC-CCHHHHHHHHHHHHhHHHHHHHHHhhhccccchhhhcchhHHH--HHHHHHHHHH
Q 036474 499 RNPNTYSSVLGLIWSLVSYRWHIK-MPTIMSGSISILSDAGLGMAMFSLGLFMALQPKIIACGKSVAT--FAMAVRFLTG 575 (646)
Q Consensus 499 kNP~IiAiilGLilsll~~r~gI~-LP~~L~~tL~~Lg~aa~PLALf~LG~sLa~~~~~~~~~~k~v~--~~vliKLIv~ 575 (646)
..|+++.++++++++-+ |+- -| .-.+.-+.+.....|++++.+=.+...++ ..+...+.+. ....+=.++.
T Consensus 25 l~~~vl~~~~~~~lsnl----gli~~p-~~s~~y~~v~~~~vPlai~LlLl~~Dlr~-i~~~g~~~l~~F~~~~~g~viG 98 (378)
T PF05684_consen 25 LPGAVLCYLLGMLLSNL----GLIDSP-ASSPVYDFVWTYLVPLAIPLLLLSADLRR-ILRLGGRLLLAFLIGAVGTVIG 98 (378)
T ss_pred cCHHHHHHHHHHHHHHC----CCcCCC-CcchHHHHHHHHHHHHHHHHHHHHccHHH-HHHhhHHHHHHHHHHHHHHHHH
Confidence 47899999999999988 643 23 23445566777788888877766666542 3233333222 2222222333
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHhc-cchhhHHHHHHHHcCCChhHHHHHHHHHHHHH
Q 036474 576 PAVIAATSIAIGLRGVLLHIAIVQAA-LPQGIVPFVFAKEYNVHPDILSTAVIFGMLIA 633 (646)
Q Consensus 576 PLLa~ll~~l~gL~~~~~~vlVL~AA-mP~Av~~~V~A~~Yg~d~elASsaVllSTLLS 633 (646)
=++++.+....--+..|+....+.+. .=-++|-.-+++.++.+.+.-+.++..-++++
T Consensus 99 ~~va~~l~~~~l~~~~wk~ag~l~gsyiGGs~N~~Av~~al~~~~~~~~a~~aaDnv~~ 157 (378)
T PF05684_consen 99 AVVAFLLFGGFLGPEGWKIAGMLAGSYIGGSVNFVAVAEALGVSDSLFAAALAADNVVM 157 (378)
T ss_pred HHHHHHHHhhcccchHHHHHHHHHhcccCchhHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 23333332221123345544444444 33367778889999999988888888888776
No 50
>PRK05326 potassium/proton antiporter; Reviewed
Probab=51.05 E-value=1.7e+02 Score=33.98 Aligned_cols=108 Identities=13% Similarity=0.098 Sum_probs=63.2
Q ss_pred hhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhHHHHHHHHHhhhccccchhhhcchhHHHHHHHHHHHHHHHH
Q 036474 499 RNPNTYSSVLGLIWSLVSYRWHIKMPTIMSGSISILSDAGLGMAMFSLGLFMALQPKIIACGKSVATFAMAVRFLTGPAV 578 (646)
Q Consensus 499 kNP~IiAiilGLilsll~~r~gI~LP~~L~~tL~~Lg~aa~PLALf~LG~sLa~~~~~~~~~~k~v~~~vliKLIv~PLL 578 (646)
.++.+-+.++|+++.-. ...--..+.+..+.++....++..+.+|+.+.... .....+..+...+++-++.=|+.
T Consensus 244 ~Sg~la~~iaGl~l~n~----~~~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~~-l~~~~~~~l~i~~~l~~vaR~l~ 318 (562)
T PRK05326 244 GSGFLAVYLAGLVLGNR----PIRHRHSILRFFDGLAWLAQIGMFLVLGLLVTPSR-LLDIALPALLLALFLILVARPLA 318 (562)
T ss_pred CcHHHHHHHHHHHHhCC----cccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888643 22222457788888888889999999999887642 11111111222222333444666
Q ss_pred HHHHHHHhCCChHHHHHHHHHhccchhhHHHHHHH
Q 036474 579 IAATSIAIGLRGVLLHIAIVQAALPQGIVPFVFAK 613 (646)
Q Consensus 579 a~ll~~l~gL~~~~~~vlVL~AAmP~Av~~~V~A~ 613 (646)
+++....++++. ....++-.+.|-+..+.++|.
T Consensus 319 v~l~~~~~~~~~--~e~~~i~~~g~RG~v~i~lA~ 351 (562)
T PRK05326 319 VFLSLLPFRFNL--REKLFISWVGLRGAVPIVLAT 351 (562)
T ss_pred HHHHHccCCCCH--hhhheeeeecchhHHHHHHHH
Confidence 666555555543 333444434566666666653
No 51
>PRK15060 L-dehydroascorbate transporter large permease subunit; Provisional
Probab=47.59 E-value=4.8e+02 Score=29.76 Aligned_cols=92 Identities=17% Similarity=0.285 Sum_probs=54.4
Q ss_pred CCCCCHHHHHHHHHHHHhH------HHHHHHHHhhhccccchhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhCCChHHH
Q 036474 520 HIKMPTIMSGSISILSDAG------LGMAMFSLGLFMALQPKIIACGKSVATFAMAVRFLTGPAVIAATSIAIGLRGVLL 593 (646)
Q Consensus 520 gI~LP~~L~~tL~~Lg~aa------~PLALf~LG~sLa~~~~~~~~~~k~v~~~vliKLIv~PLLa~ll~~l~gL~~~~~ 593 (646)
...+|+.+.+.+.-++..- .-+.++.+|+.|... ..=+++.|++.= +..-+|+|+.+.
T Consensus 294 ~~gvp~~i~~~i~~~~~~~~~~Ll~i~~~~lvlGmfld~~---------------a~ili~~Pil~P-i~~~~Gidpv~f 357 (425)
T PRK15060 294 IAELPMMVSDLLQPLVDSPRLLFIVIMVAIMVVGMVMDLT---------------PTVLILTPVLMP-LVKEAGIDPIYF 357 (425)
T ss_pred HcChHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhHH---------------HHHHHHHHHHHH-HHHHcCCChHHH
Confidence 4578888888776665422 222333444444321 122244454432 233479999987
Q ss_pred HHHHHHh------ccchhhHHHHHHHHcCCChhHHHHHHH
Q 036474 594 HIAIVQA------ALPQGIVPFVFAKEYNVHPDILSTAVI 627 (646)
Q Consensus 594 ~vlVL~A------AmP~Av~~~V~A~~Yg~d~elASsaVl 627 (646)
.+.++.. .=|.+.+.|+.+.-.|.+.+.....+.
T Consensus 358 gii~~~~~~ig~iTPPvG~~lfv~~~ia~~~~~~i~~~~~ 397 (425)
T PRK15060 358 GVMFIINCSIGLITPPVGNVLNVISGVAKLKFDDAVRGVF 397 (425)
T ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHhcCCCHHHHHHHHH
Confidence 7666554 235599999999888888777655544
No 52
>PRK03818 putative transporter; Validated
Probab=47.11 E-value=4e+02 Score=31.27 Aligned_cols=94 Identities=16% Similarity=0.188 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhHHHHHHHHHhhhccccc--hhhhcchhHHHHHHHHHHHHHHHHHHH
Q 036474 504 YSSVLGLIWSLVSYRWHIKMPTIMSGSISILSDAGLGMAMFSLGLFMALQP--KIIACGKSVATFAMAVRFLTGPAVIAA 581 (646)
Q Consensus 504 iAiilGLilsll~~r~gI~LP~~L~~tL~~Lg~aa~PLALf~LG~sLa~~~--~~~~~~~k~v~~~vliKLIv~PLLa~l 581 (646)
-..+.|+++..+..++++++|......++.+| .-+=++++|+.-...- ..++..++..+..+ +=.++..+++++
T Consensus 35 g~L~~gl~~G~~~~~~~~~~~~~~~~~~~~~g---l~lFv~~vGl~~Gp~f~~~l~~~G~~~~~~~~-~~~~~~~~~~~~ 110 (552)
T PRK03818 35 GVLFGGIIVGHFVSQFGLTLDSDMLHFIQEFG---LILFVYTIGIQVGPGFFSSLRKSGLRLNLFAV-LIVILGGLVTAI 110 (552)
T ss_pred HHHHHHHHHhccccccCcccChHHHHHHHHHH---HHHHHHHHhhcccHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHH
Confidence 34455666665211127778887666665333 3333444554433221 11122344333332 223333455666
Q ss_pred HHHHhCCChHHHHHHHHHhcc
Q 036474 582 TSIAIGLRGVLLHIAIVQAAL 602 (646)
Q Consensus 582 l~~l~gL~~~~~~vlVL~AAm 602 (646)
+.++++++.. ..+-++..++
T Consensus 111 ~~~~~~~~~~-~~~G~~aGa~ 130 (552)
T PRK03818 111 LHKLFGIPLP-VMLGIFSGAV 130 (552)
T ss_pred HHHHhCCCHH-HHHHHhhccc
Confidence 6778999866 4444554443
No 53
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=47.00 E-value=2e+02 Score=35.50 Aligned_cols=110 Identities=13% Similarity=-0.039 Sum_probs=65.1
Q ss_pred hhhHHHHHHHHHHHHHHhhcCCC-CCCHHHHHHHHHHHHhHHHHHHHHHhhhccccch----hhhcchhHHHHHHHHHHH
Q 036474 499 RNPNTYSSVLGLIWSLVSYRWHI-KMPTIMSGSISILSDAGLGMAMFSLGLFMALQPK----IIACGKSVATFAMAVRFL 573 (646)
Q Consensus 499 kNP~IiAiilGLilsll~~r~gI-~LP~~L~~tL~~Lg~aa~PLALf~LG~sLa~~~~----~~~~~~k~v~~~vliKLI 573 (646)
-+-++-++++|+++... +. .--.-...+.+.+......+..+.+|+.+..... .....|+.+++.+++=++
T Consensus 264 gSGfLAVFVAGl~~gn~----~~~~~~~~~~~f~e~ie~LLn~~lFVlLGa~L~~~~l~~~~l~~~~w~~ilLaL~LifV 339 (810)
T TIGR00844 264 VDDLLVSFFAGTAFAWD----GWFAQKTHESNVSNVIDVLLNYAYFVYLGSILPWKDFNNGDIGLDVWRLIILSLVVIFL 339 (810)
T ss_pred cccHHHHHHHHHHHhcc----cchhhhHHHhhHHHHHHHHHHHHHHHHHHHhhCHhhcccchhhHHHHHHHHHHHHHHHH
Confidence 35666667777777643 21 0001122344455556667889999999864310 001235555666666667
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHhccchhhHHHHHH
Q 036474 574 TGPAVIAATSIAIGLRGVLLHIAIVQAALPQGIVPFVFA 612 (646)
Q Consensus 574 v~PLLa~ll~~l~gL~~~~~~vlVL~AAmP~Av~~~V~A 612 (646)
.-|.+++++..+.+-...+...+++--.=|-|+.+.+|+
T Consensus 340 rRPpaVlll~~li~~~~s~rErlFigWFGpRGIGSIyyl 378 (810)
T TIGR00844 340 RRIPAVLILKPLIPDIKSWREAMFIGHFGPIGVGAVFAA 378 (810)
T ss_pred HHHHHHHHHhhhcccCCCHHHHHHheeeccccHHHHHHH
Confidence 778777765555554445777777777788777666553
No 54
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=44.90 E-value=4.4e+02 Score=28.59 Aligned_cols=57 Identities=18% Similarity=0.200 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhccchhhH-HHHHHHHcCCChhHHHHHH
Q 036474 566 FAMAVRFLTGPAVIAATSIAIGLRGVLLHIAIVQAALPQGIV-PFVFAKEYNVHPDILSTAV 626 (646)
Q Consensus 566 ~~vliKLIv~PLLa~ll~~l~gL~~~~~~vlVL~AAmP~Av~-~~V~A~~Yg~d~elASsaV 626 (646)
...++=+++.-+..|.+....++|... -+++++|-+.. ..++|++||.|.+..+..=
T Consensus 59 ~~~~~~~~~~~~~~~~l~r~~~~d~~T----A~~~~~PGg~s~m~~la~~~gad~~~Va~~q 116 (318)
T PF05145_consen 59 LLLVVTLLLSLVGAWLLRRISGLDRAT----AFFASMPGGLSEMVALAEEYGADTRRVALVQ 116 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChhH----HHHHcCCccHHHHHHHHHHcCCChhhhHHHH
Confidence 333444444444445445555666443 57789998544 5678999999988776443
No 55
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=44.76 E-value=57 Score=35.73 Aligned_cols=98 Identities=14% Similarity=0.090 Sum_probs=49.3
Q ss_pred HHHHHHHHHhhhccccchhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhc-----cchhhHHHHHH
Q 036474 538 GLGMAMFSLGLFMALQPKIIACGKSVATFAMAVRFLTGPAVIAATSIAIGLRGVLLHIAIVQAA-----LPQGIVPFVFA 612 (646)
Q Consensus 538 a~PLALf~LG~sLa~~~~~~~~~~k~v~~~vliKLIv~PLLa~ll~~l~gL~~~~~~vlVL~AA-----mP~Av~~~V~A 612 (646)
-.|..-|.+|..+..+. .....+.-++.. +.=.++.+.+.+.+..+++.++......++.+| -|.+ ..-..
T Consensus 204 lLp~~~~~lG~~l~lq~-i~~~G~~GilL~-~~~~~~t~~~~~~~~Rl~~~~~g~~g~a~~ttaG~aic~pAA--vaa~~ 279 (326)
T PRK05274 204 LIPFFAFALGNGIDLGT-IITAGLSGILLG-VAVVAVTGIPLYLADRLIGGGNGVAGAAAGSTAGNAVATPAA--VAAAD 279 (326)
T ss_pred EHHHHHHHHhcceeHhH-HHhcCCcchhhh-hhHhhccchhhHhHhheeecCCCcchHHHHHHHHHHHHHHHH--HHhhc
Confidence 67888888999999874 333444433332 233344566566666777655543333333322 2222 11122
Q ss_pred HHcCCChhHHHHHHHHHHHHHHHHHHH
Q 036474 613 KEYNVHPDILSTAVIFGMLIALPITIL 639 (646)
Q Consensus 613 ~~Yg~d~elASsaVllSTLLSLpl~i~ 639 (646)
-.|....+.++..|....+++..+.++
T Consensus 280 p~~~~~~~~at~~VA~~vivt~il~P~ 306 (326)
T PRK05274 280 PSFAPFAPAATAQVAAAVIVTAILAPI 306 (326)
T ss_pred cccccchHhHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555333333
No 56
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=41.53 E-value=5.5e+02 Score=28.74 Aligned_cols=130 Identities=15% Similarity=0.130 Sum_probs=78.5
Q ss_pred HHHHHHHHHHhhhH---HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhHHHHHHHHHhhhccccch-hhhcchhHH
Q 036474 489 ILIMVWRKLIRNPN---TYSSVLGLIWSLVSYRWHIKMPTIMSGSISILSDAGLGMAMFSLGLFMALQPK-IIACGKSVA 564 (646)
Q Consensus 489 il~~vlkkllkNP~---IiAiilGLilsll~~r~gI~LP~~L~~tL~~Lg~aa~PLALf~LG~sLa~~~~-~~~~~~k~v 564 (646)
.+...+-+.+|.|. +-..+++.+++... -.++++|+++......+-++ .+|..++.... ..++.....
T Consensus 198 ~~~g~l~~~lr~Pa~~ll~~l~l~a~v~~~~-~~~~~lP~wl~~va~~~iG~-------~IG~~f~~~~l~~~~r~~~~~ 269 (352)
T COG3180 198 LLGGLLGKLLRFPAPTLLGPLLLGAIVHFGG-GITIQLPAWLLAVAQALIGA-------LIGSRFDRSILREAKRLLPAI 269 (352)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHhhccc-ceeeeCCHHHHHHHHHHHHH-------HHcccccHHHHHHhHhhcchH
Confidence 34445556677773 55667777777762 12578999888665554443 46776665421 112223334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhccchhhHHH-HHHHHcCCChhHHHHHHHHHH
Q 036474 565 TFAMAVRFLTGPAVIAATSIAIGLRGVLLHIAIVQAALPQGIVPF-VFAKEYNVHPDILSTAVIFGM 630 (646)
Q Consensus 565 ~~~vliKLIv~PLLa~ll~~l~gL~~~~~~vlVL~AAmP~Av~~~-V~A~~Yg~d~elASsaVllST 630 (646)
+...+.=+++.-.+++++.++.++|... .+++..|-+.... ..|..-+.|..+..+.=.+=-
T Consensus 270 ~v~ii~l~~~~~~~a~ll~~~~~i~~~t----a~La~sPGGl~~ma~~A~~l~ad~a~V~a~q~lRl 332 (352)
T COG3180 270 LVSIIALMAIAAGMAGLLSWLTGIDLNT----AYLATSPGGLDTMAAIAAALGADPAFVMALQVLRL 332 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHH----HHHHcCCCcHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 4444455555556666666777777664 5678899977654 457788888777765544433
No 57
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=40.77 E-value=3.2e+02 Score=32.03 Aligned_cols=78 Identities=15% Similarity=0.156 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhHHHHHHHHHhhhccccc--hhhhcchhHHHHHHHHHHHHHHHHHHH
Q 036474 504 YSSVLGLIWSLVSYRWHIKMPTIMSGSISILSDAGLGMAMFSLGLFMALQP--KIIACGKSVATFAMAVRFLTGPAVIAA 581 (646)
Q Consensus 504 iAiilGLilsll~~r~gI~LP~~L~~tL~~Lg~aa~PLALf~LG~sLa~~~--~~~~~~~k~v~~~vliKLIv~PLLa~l 581 (646)
-..++|+++..+ ++++|+.+.+ ...-+=++++|+.-..+- ..++..++..+..+ +=.++.-+++++
T Consensus 40 gvLfvgl~~G~~----g~~i~~~v~~-------~gl~lFvy~vG~~~Gp~Ff~~l~~~g~~~~~~a~-~~~~~~~~~~~~ 107 (562)
T TIGR03802 40 GSLIVAVLIGQL----GIQIDPGVKA-------VFFALFIFAIGYEVGPQFFASLKKDGLREIILAL-VFAVSGLITVYA 107 (562)
T ss_pred HHHHHHHHHHhc----CCCCChHHHH-------HHHHHHHHHhhhccCHHHHHHHHhccHHHHHHHH-HHHHHHHHHHHH
Confidence 345666666666 8888886443 333344445555544321 12233455444433 334455567777
Q ss_pred HHHHhCCChHHH
Q 036474 582 TSIAIGLRGVLL 593 (646)
Q Consensus 582 l~~l~gL~~~~~ 593 (646)
+.++++++....
T Consensus 108 ~~~~~g~~~~~~ 119 (562)
T TIGR03802 108 LAKIFGLDKGTA 119 (562)
T ss_pred HHHHhCCCHHHH
Confidence 788899986543
No 58
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=36.56 E-value=3.4e+02 Score=33.43 Aligned_cols=117 Identities=10% Similarity=0.090 Sum_probs=60.8
Q ss_pred ChhhhhHHHHHHHHHHHHHHHHHHhhcCCcccc-h---hHHHHHHHH-HHHHHHHHHHHHHHHHhcCCcchhHHhhhhcc
Q 036474 35 TPDQCSGINRFVAVFAVPLLSFHFISLNDPYAM-N---YHFIAADSL-QKVVILAALFLWQAFTKHGNLEWMITLFSLST 109 (646)
Q Consensus 35 s~e~~~~LnrFV~~~ALPALLF~~lA~~~l~~l-~---~~filay~l-~~ll~f~l~~l~ar~~~~~~~~~~aal~alas 109 (646)
..+..+.+..|+..+.+|..+...-.+.|+..+ + |.+++.+.+ +.+.=++..++.+++.+- +.+. +...++ .
T Consensus 312 ~~~l~ekle~~~~~lflPlFFv~vGl~idl~~l~~~~~~~~~~~liv~a~~gK~~g~~l~a~~~g~-~~~e-al~lG~-l 388 (832)
T PLN03159 312 GVTLIEKLEDFVSGLLLPLFFAISGLKTNVTKIQGPATWGLLVLVIIMASAGKIMGTIIIAFFYTM-PFRE-GITLGF-L 388 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhheeeHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CHHH-HHHHHH-H
Confidence 345567788888999999999988888888654 2 222222211 111112223333444333 3322 233332 2
Q ss_pred cCcccccHHHHHHHh-----hcCChhhHHHHHHHHHHHHHHHHHHHHHHh
Q 036474 110 LPNTLVMGIPLLKAM-----YGDDSGSLMVQVVVLQSVIWYTLMLFMFEY 154 (646)
Q Consensus 110 fsNtgfmGiPLl~aL-----fG~eal~~l~livvv~~lil~~l~lvLmE~ 154 (646)
...-|.+.+-++... .+++....+.+.+++.+.+..|+...+...
T Consensus 389 m~~kG~~~Lii~~ig~~~gvi~~~~f~~lVl~avl~T~i~~Plv~~ly~p 438 (832)
T PLN03159 389 MNTKGLVEMIVLNVGRDQEVLDDESFAVMVLVAVAMTALITPVVTVVYRP 438 (832)
T ss_pred HhcccHHHHHHHHHHHhcCccCchhhhHHHHHHHHHHHHHHHHHHHHhCH
Confidence 233345554444443 334444444455556777777876665543
No 59
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=35.25 E-value=5.6e+02 Score=27.58 Aligned_cols=99 Identities=14% Similarity=0.003 Sum_probs=60.0
Q ss_pred hhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhHHHHHHHHHhhhccccchhhhcchhHHHHHHHHHHHHHHHHH
Q 036474 500 NPNTYSSVLGLIWSLVSYRWHIKMPTIMSGSISILSDAGLGMAMFSLGLFMALQPKIIACGKSVATFAMAVRFLTGPAVI 579 (646)
Q Consensus 500 NP~IiAiilGLilsll~~r~gI~LP~~L~~tL~~Lg~aa~PLALf~LG~sLa~~~~~~~~~~k~v~~~vliKLIv~PLLa 579 (646)
-|+++-+++|.++.-. ++=-++.....-++.-+.+.|+.+|.-=..-... .....+..+....++=.++.-++.
T Consensus 7 ~~i~~ii~~G~~~~~~----~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 80 (385)
T PF03547_consen 7 LPIFLIILLGYLLGRF----GILDPEASKGLSKLVFNVFLPALIFSSIANTDTL--EDLLSLWFIPVFAFIIFILGLLLG 80 (385)
T ss_pred HHHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccch--hhhhhhHHHHHHHHHHHHHHHHHH
Confidence 4778888888877765 7666777888888888999999998754431111 101122222222233334444455
Q ss_pred HHHHHHhCCChHHHHHHHHHhccch
Q 036474 580 AATSIAIGLRGVLLHIAIVQAALPQ 604 (646)
Q Consensus 580 ~ll~~l~gL~~~~~~vlVL~AAmP~ 604 (646)
+++..++..+..+..+.++.++.+=
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~N 105 (385)
T PF03547_consen 81 FLLSRLFRLPKEWRGVFVLAASFGN 105 (385)
T ss_pred HHHHHhcCCCcccceEEEecccCCc
Confidence 5555667778777777666665543
No 60
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=34.30 E-value=2.6e+02 Score=31.76 Aligned_cols=88 Identities=8% Similarity=-0.020 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHhccccCh---hhhhHHHHHHHHHHHHHHHH-HHhhcCCcccc----hhHHHHHHHHHHHHHHHHHH
Q 036474 16 PLYVAMILAYGSVRWWKIFTP---DQCSGINRFVAVFAVPLLSF-HFISLNDPYAM----NYHFIAADSLQKVVILAALF 87 (646)
Q Consensus 16 PVFlLI~LGyla~R~~glfs~---e~~~~LnrFV~~~ALPALLF-~~lA~~~l~~l----~~~filay~l~~ll~f~l~~ 87 (646)
|+-++|.+-.++.- .+++++ |..+.+++|..+=..=.|++ -.++=+|+.++ .|.+++..+.-.+.+....+
T Consensus 292 ~va~MIil~a~lk~-~nlvp~~i~~GA~~l~~F~sk~~t~~Lm~giGv~ytdl~ev~~alt~~~vii~~~vVl~~i~~~~ 370 (438)
T COG3493 292 PVAFMIILVAILKA-ANLVPKEIEEGAKQLSQFFSKNLTWPLMAGIGVAYTDLNEVAAALTWQNVIIALSVVLGAILGGA 370 (438)
T ss_pred hHHHHHHHHHHHHH-hCcCCHHHHHHHHHHHHHHHHhhHHHHHHhhhhccccHHHHHHHhchhHHHHHHHHHHHHHHHHH
Confidence 44355555555555 477875 46788888887655444455 57877899883 88888766555555556667
Q ss_pred HHHHHHhcCCcchhHHhhh
Q 036474 88 LWQAFTKHGNLEWMITLFS 106 (646)
Q Consensus 88 l~ar~~~~~~~~~~aal~a 106 (646)
+.+|+..--+.|. ++.+
T Consensus 371 f~grl~~~YPVEa--AI~a 387 (438)
T COG3493 371 FVGRLMGFYPVEA--AITA 387 (438)
T ss_pred HHHHHhcCCchHH--HHHH
Confidence 7788887777773 4444
No 61
>TIGR00819 ydaH p-Aminobenzoyl-glutamate transporter family. The p-Aminobenzoyl-glutamate transporter family includes two transporters, the AbgT (YdaH) protein of E. coli and MtrF of Neisseria gonorrhoea. AbgT is apparently cryptic in wild type cells, but when expressed on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs. p-Aminobenzoate is a constituent of and a precursor for the biosynthesis of folic acid.
Probab=34.05 E-value=8.4e+02 Score=28.67 Aligned_cols=91 Identities=16% Similarity=0.181 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhhccccchhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHH-----
Q 036474 525 TIMSGSISILSDAGLGMAMFSLGLFMALQPKIIACGKSVATFAMAVRFLTGPAVIAATSIAIGLRGVLLHIAIVQ----- 599 (646)
Q Consensus 525 ~~L~~tL~~Lg~aa~PLALf~LG~sLa~~~~~~~~~~k~v~~~vliKLIv~PLLa~ll~~l~gL~~~~~~vlVL~----- 599 (646)
.......+.|.+...|-..+.+|+.+-..- . + -.+--.+.-=.+.+|.++= +..++|++++..+.+.=.
T Consensus 370 ~ia~~~A~~L~~~~l~~~~~~i~~~l~~~~--i--N-lfI~S~Sgkwal~aPI~vP-m~~~lGisp~~t~~AyriGDs~t 443 (513)
T TIGR00819 370 FIAVGGADFLEESGLAGIPAFIGFALICAF--I--C-LFIASASAIWAILAPIFVP-MFMLAGFAPAFAQAAFRIADSST 443 (513)
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHH--H--H-heeccHHHHHHHHHHHHHH-HHHHcCCCHHHHHHHHHHhchHH
Confidence 344555566655555555566666554321 0 0 0000111111234454443 335678888877665432
Q ss_pred -hccchh---hHHHHHHHHcCCChhH
Q 036474 600 -AALPQG---IVPFVFAKEYNVHPDI 621 (646)
Q Consensus 600 -AAmP~A---v~~~V~A~~Yg~d~el 621 (646)
.-.|+. .....+++||+.|...
T Consensus 444 NiItP~~~y~~lil~~~~~y~k~~g~ 469 (513)
T TIGR00819 444 LIIAPMMPFFGLFLAFLMKYKKDAGL 469 (513)
T ss_pred HhhccCcchHHHHHHHHHHhccCCcH
Confidence 345666 7888889999887544
No 62
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=33.33 E-value=3e+02 Score=30.56 Aligned_cols=61 Identities=3% Similarity=0.003 Sum_probs=35.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcCCcccc---hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 036474 39 CSGINRFVAVFAVPLLSFHFISLNDPYAM---NYHFIAADSLQKVVILAALFLWQAFTKHGNLE 99 (646)
Q Consensus 39 ~~~LnrFV~~~ALPALLF~~lA~~~l~~l---~~~filay~l~~ll~f~l~~l~ar~~~~~~~~ 99 (646)
.+...+.+-.+++=.++..++++.++.++ ..++++...++.+++.+..+++..++.+++.|
T Consensus 273 d~~~i~~I~~~sL~~fl~~almsl~l~~l~~~a~Plliil~~q~i~~~~f~~fv~fr~~gkdyd 336 (368)
T PF03616_consen 273 DRKTIDRISGISLDLFLAMALMSLKLWVLADYALPLLIILAVQTILMVLFAYFVTFRVMGKDYD 336 (368)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCChh
Confidence 33334456777888888999999998884 33344444555554444444443333444444
No 63
>COG5505 Predicted integral membrane protein [Function unknown]
Probab=32.96 E-value=6.7e+02 Score=27.95 Aligned_cols=116 Identities=15% Similarity=0.100 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHhhcCCC-CCCHHHHHHHHHHHHhHHHHHHHHHhhhccccchhhhcchhHHHHHHHHHHHHHHHHHHH
Q 036474 503 TYSSVLGLIWSLVSYRWHI-KMPTIMSGSISILSDAGLGMAMFSLGLFMALQPKIIACGKSVATFAMAVRFLTGPAVIAA 581 (646)
Q Consensus 503 IiAiilGLilsll~~r~gI-~LP~~L~~tL~~Lg~aa~PLALf~LG~sLa~~~~~~~~~~k~v~~~vliKLIv~PLLa~l 581 (646)
++..+.|+++.++ .+ ++|..-+-..-+ .-.-+++++.+..+... ......+...++-++.|-++.+.
T Consensus 251 v~vsi~gLi~aLt----Pf~~lpgs~elgtv~---lY~~v~vias~Ad~~~i-----~taP~~i~~gf~il~~h~~v~f~ 318 (384)
T COG5505 251 VLVSITGLIIALT----PFERLPGSQELGTVL---LYLFVVVIASPADLRLI-----VTAPLIILFGFIILISHLAVSFA 318 (384)
T ss_pred hHHHHHHHHHHhC----ccccCCchhhhhHHH---HHHHHHHhccchhHHHH-----HhhhHHHHHHHHHHHHHHHHHHH
Confidence 4567788999888 43 356432211111 11234455555544432 12333455666777888888888
Q ss_pred HHHHhCCChHHHHHHHHHhccchhhHHHHHHHHcCCChhHHHHHHHHHHHHH
Q 036474 582 TSIAIGLRGVLLHIAIVQAALPQGIVPFVFAKEYNVHPDILSTAVIFGMLIA 633 (646)
Q Consensus 582 l~~l~gL~~~~~~vlVL~AAmP~Av~~~V~A~~Yg~d~elASsaVllSTLLS 633 (646)
...+|.+|-....++.+. -.=-.+.+.++|..|| .++++-.++..|+-.
T Consensus 319 ~~KlF~~dL~~i~~AslA-niGG~~sAp~~A~A~n--r~lv~~gvlmg~lG~ 367 (384)
T COG5505 319 AGKLFRVDLEEILLASLA-NIGGPTSAPAMAIAKN--RELVAPGVLMGTLGY 367 (384)
T ss_pred HHHHHHhHHHHHHHHHHh-ccCCccchhHHHhhcC--chhcchHHHHHHHHH
Confidence 889998887766555543 3334556678888888 689999999988855
No 64
>TIGR03109 exosortase_1 exosortase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. We designate this, the most common type so far, exosortase 1. We propose the gene symbol xrtA, analogous to srtA for the most common type of sortase in Gram-positive bacteria.
Probab=31.94 E-value=1.9e+02 Score=30.74 Aligned_cols=90 Identities=11% Similarity=0.088 Sum_probs=60.7
Q ss_pred CCCCCHHHHHHHHHHHHhHHHHHHHHHhhhccccchhh---hcchhHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHH
Q 036474 520 HIKMPTIMSGSISILSDAGLGMAMFSLGLFMALQPKII---ACGKSVATFAMAVRFLTGPAVIAATSIAIGLRGVLLHIA 596 (646)
Q Consensus 520 gI~LP~~L~~tL~~Lg~aa~PLALf~LG~sLa~~~~~~---~~~~k~v~~~vliKLIv~PLLa~ll~~l~gL~~~~~~vl 596 (646)
-+|+|+.+...++.+..-.+-..|-..|+-.......+ .....-.-.++.+|.++.=+..-.++..+-....+.+++
T Consensus 127 ~vP~p~~l~~pLq~~ta~~~~~~L~~~Gipv~~eG~~I~l~~g~~~Va~aCSGlr~l~~~~~l~~l~~~l~~~~~~~r~~ 206 (267)
T TIGR03109 127 AVPVGDFLIPPLQDITAFFTVALLSATGIPVYREGVFIHIPSGTFEVAEACSGLRYLIASLAIGALYAYLNFRSIKRRLL 206 (267)
T ss_pred HcCCHHHHhhHHHHHHHHHHHHHHHHcCCCEEEeeeEEEECCEEEEEeCCCCCHHHHHHHHHHHHHHHHHhccchhHHHH
Confidence 67899999999999999999999999998877643111 111222234677887664333333333333556667899
Q ss_pred HHHhccchhhHHH
Q 036474 597 IVQAALPQGIVPF 609 (646)
Q Consensus 597 VL~AAmP~Av~~~ 609 (646)
++.++.|.++..-
T Consensus 207 l~~~ai~iai~aN 219 (267)
T TIGR03109 207 FFLVSIIVPILAN 219 (267)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987653
No 65
>PRK04972 putative transporter; Provisional
Probab=31.50 E-value=8.4e+02 Score=28.67 Aligned_cols=84 Identities=17% Similarity=0.182 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhHHHHHHHHHhhhccccch----hhhcchhHHHHHHHHHHHHHHHHH
Q 036474 504 YSSVLGLIWSLVSYRWHIKMPTIMSGSISILSDAGLGMAMFSLGLFMALQPK----IIACGKSVATFAMAVRFLTGPAVI 579 (646)
Q Consensus 504 iAiilGLilsll~~r~gI~LP~~L~~tL~~Lg~aa~PLALf~LG~sLa~~~~----~~~~~~k~v~~~vliKLIv~PLLa 579 (646)
-..++|+++..+ +.++|..+. ...++||.-.+.+...+. .++..++..+.. ++=.++.-+++
T Consensus 42 g~L~vgl~~g~~----~~~~~~~~~---------~~gl~lF~~~vG~~~Gp~F~~~l~~~g~~~~~~~-~~~~~~~~~~~ 107 (558)
T PRK04972 42 GVLVVSLLLGQQ----HFSINTDAL---------NLGFMLFIFCVGVEAGPNFFSIFFRDGKNYLMLA-LVMVGSALVIA 107 (558)
T ss_pred HHHHHHHHHHhC----CCCCChHHH---------HHHHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHH
Confidence 344566666666 777777553 355666655554443321 112233433332 22233334555
Q ss_pred HHHHHHhCCChHHHHHHHHHhcc
Q 036474 580 AATSIAIGLRGVLLHIAIVQAAL 602 (646)
Q Consensus 580 ~ll~~l~gL~~~~~~vlVL~AAm 602 (646)
+.+.++++++... .+-++..++
T Consensus 108 ~~~~~~~~~~~~~-~~G~~aGa~ 129 (558)
T PRK04972 108 LGLGKLFGWDIGL-TAGMLAGSM 129 (558)
T ss_pred HHHHHHhCCCHHH-HHHHhhccc
Confidence 5666789999653 444444443
No 66
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=30.62 E-value=5.5e+02 Score=28.44 Aligned_cols=106 Identities=12% Similarity=0.102 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHhccccChhhhhHHHHHHHHHHHHHHHHHH---hhcCCcccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 036474 16 PLYVAMILAYGSVRWWKIFTPDQCSGINRFVAVFAVPLLSFHF---ISLNDPYAMNYHFIAADSLQKVVILAALFLWQAF 92 (646)
Q Consensus 16 PVFlLI~LGyla~R~~glfs~e~~~~LnrFV~~~ALPALLF~~---lA~~~l~~l~~~filay~l~~ll~f~l~~l~ar~ 92 (646)
|..+..++|.+++.. | =+-+--+.+.+++--+-|=++=|+. +++.++.++-+..+++..++.++-+. .+.+.|+
T Consensus 1 P~vLFF~LG~~A~~~-k-SdL~iP~~i~k~lsiyLLlaIGlkGG~~l~~~~~~~~~~~~~~~~~lg~liPl~-~~~iLr~ 77 (327)
T PF05982_consen 1 PVVLFFILGIIAALL-K-SDLEIPEAIYKFLSIYLLLAIGLKGGVELAHSGLTALLLPLLAAVLLGILIPLI-AFPILRR 77 (327)
T ss_pred CchHHHHHHHHHHHH-c-CCCcCChhHHHHHHHHHHHHHhcccHHHHHcCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 445556677777653 1 2445677788887777777777864 55666655555556666666655554 3333343
Q ss_pred Hhc-CCcchhHHhhhhcccCcccccHHHHHHHhhcC
Q 036474 93 TKH-GNLEWMITLFSLSTLPNTLVMGIPLLKAMYGD 127 (646)
Q Consensus 93 ~~~-~~~~~~aal~alasfsNtgfmGiPLl~aLfG~ 127 (646)
+.| ++.|. +++. +.|+..--.-+-...+..-.
T Consensus 78 ~~~l~~~da-aAiA--AhYGSVSavTF~~a~~~L~~ 110 (327)
T PF05982_consen 78 LGKLDRADA-AAIA--AHYGSVSAVTFAAALAFLES 110 (327)
T ss_pred ccCCChhhH-HHHH--HHcCchHHHHHHHHHHHHHH
Confidence 332 22232 3333 34555555555555555433
No 67
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=29.99 E-value=8.3e+02 Score=27.38 Aligned_cols=61 Identities=11% Similarity=0.087 Sum_probs=38.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhccchhhH-HHHHHHHcCCChhHHHHH
Q 036474 561 KSVATFAMAVRFLTGPAVIAATSIAIGLRGVLLHIAIVQAALPQGIV-PFVFAKEYNVHPDILSTA 625 (646)
Q Consensus 561 ~k~v~~~vliKLIv~PLLa~ll~~l~gL~~~~~~vlVL~AAmP~Av~-~~V~A~~Yg~d~elASsa 625 (646)
|.....+++.-+...-++.|++...-.+|+.. -+.+++|-+.. -..+|++||.|...+|-+
T Consensus 87 w~~~~~v~~~tl~~s~l~g~ll~r~~~~~~~T----a~~gs~PGgas~m~~iA~d~gAd~~~VAl~ 148 (352)
T COG3180 87 WPIVLVVLLLTLLSSILLGWLLKRFSILPGNT----AFLGSSPGGASAMVSIAQDYGADLRLVALM 148 (352)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhcCCCcch----hhHhcCCchHHHHHHHHHHhCCChhHHHHH
Confidence 44444445555555555555555544566554 35678898554 456799999998888644
No 68
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=29.95 E-value=8.2e+02 Score=27.31 Aligned_cols=50 Identities=16% Similarity=0.143 Sum_probs=41.1
Q ss_pred hhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH-hHHHHHHHHHhhhcccc
Q 036474 499 RNPNTYSSVLGLIWSLVSYRWHIKMPTIMSGSISILSD-AGLGMAMFSLGLFMALQ 553 (646)
Q Consensus 499 kNP~IiAiilGLilsll~~r~gI~LP~~L~~tL~~Lg~-aa~PLALf~LG~sLa~~ 553 (646)
-++.+=|.++|++++-+ ..+- +-+++-++.+++ ...|+=.+.+|+.+...
T Consensus 243 ls~ilGAFlaGl~ls~~----~~~~-~~l~~~i~~~~~~~fiplFFi~vG~~~dl~ 293 (397)
T COG0475 243 LSMILGAFLAGLLLSES----EYRK-HELEEKIEPFGDGLFIPLFFISVGMSLDLG 293 (397)
T ss_pred hhHHHHHHHHHHHhccc----ccch-HHHHHHHHhHHhHHHHHHHHHHhhHHcCHH
Confidence 57888889999999866 2221 578899999999 99999999999999875
No 69
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=29.23 E-value=3.5e+02 Score=29.83 Aligned_cols=62 Identities=18% Similarity=0.105 Sum_probs=43.2
Q ss_pred hhHH-HHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhHHHHHHHHHhhhccccchhhhcchhHHHHH
Q 036474 500 NPNT-YSSVLGLIWSLVSYRWHIKMPTIMSGSISILSDAGLGMAMFSLGLFMALQPKIIACGKSVATFA 567 (646)
Q Consensus 500 NP~I-iAiilGLilsll~~r~gI~LP~~L~~tL~~Lg~aa~PLALf~LG~sLa~~~~~~~~~~k~v~~~ 567 (646)
-|-+ +++++-.+++-+ + .+|+.+.+.++.+++...-+||.++|+....+. .++.+.|..+..
T Consensus 251 ~P~FvlgFl~~~~l~S~----~-~lp~~~~~~l~~~~~~ll~~AmaaiGl~t~~~~-l~~~G~kp~~~g 313 (335)
T TIGR00698 251 IPWFAVLFIGVAIFNSF----D-LLPGEVVQALVPLDTFLLATAMAALGLTTNVSA-VKKAGVKPLFAS 313 (335)
T ss_pred CChHHHHHHHHHHHHHh----h-hCcHHHHHHHHHHHHHHHHHHHHHHhhcCcHHH-HHHcCchHHHHH
Confidence 4543 344444444443 3 478889999999999999999999999998864 444556654443
No 70
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=28.05 E-value=4.2e+02 Score=30.34 Aligned_cols=40 Identities=8% Similarity=0.251 Sum_probs=28.7
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHhhc-CCCCCCHHHHHHHHH
Q 036474 494 WRKLIRNPNTYSSVLGLIWSLVSYR-WHIKMPTIMSGSISI 533 (646)
Q Consensus 494 lkkllkNP~IiAiilGLilsll~~r-~gI~LP~~L~~tL~~ 533 (646)
+|+++++|++||+.+.......++- .-..+|.++.+.+++
T Consensus 251 ~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f 291 (466)
T KOG2532|consen 251 YKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGF 291 (466)
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCC
Confidence 7789999999999998877665221 123478888876643
No 71
>TIGR00807 malonate_madL malonate transporter, MadL subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM. The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=27.46 E-value=3.8e+02 Score=25.69 Aligned_cols=80 Identities=9% Similarity=0.010 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHhccccChhhhhHHHHHHHHHHHHHHHHHHhhcCCcccc--hhHHHHHHHHHHHHHHHHHHHHH
Q 036474 13 AIVPLYVAMILAYGSVRWWKIFTPDQCSGINRFVAVFAVPLLSFHFISLNDPYAM--NYHFIAADSLQKVVILAALFLWQ 90 (646)
Q Consensus 13 ~ilPVFlLI~LGyla~R~~glfs~e~~~~LnrFV~~~ALPALLF~~lA~~~l~~l--~~~filay~l~~ll~f~l~~l~a 90 (646)
+-+-++++|++...+.| +|+++++..+++...- -.-+|..+=-+-.++=...+ -+.-+++-..+..++|+..-++.
T Consensus 36 VGiAMlLLi~~~~~l~k-~G~l~~~te~Gi~FW~-aMYIPIVVAMAA~QNVv~Al~gG~~Allagi~av~~~~~~i~~l~ 113 (125)
T TIGR00807 36 VGIAMILLIISKELLAK-RGHLPQVTQFGVGFWS-AMYIPIVVAMAAGQNVVAALSGGMLALLASVAALIVTVLVIRWIS 113 (125)
T ss_pred HHHHHHHHHHHHHHHHH-cCCCChhHHhHHHHHH-ccHhHHHHHHhhhchhHHHhcCCchHHHHHHHHHHHHHHHHHHHH
Confidence 34567889999999999 7999999999987432 12246555444334333334 33344455566667777767777
Q ss_pred HHHh
Q 036474 91 AFTK 94 (646)
Q Consensus 91 r~~~ 94 (646)
|+-+
T Consensus 114 r~g~ 117 (125)
T TIGR00807 114 KSSY 117 (125)
T ss_pred HhCC
Confidence 7643
No 72
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=27.30 E-value=5.8e+02 Score=28.45 Aligned_cols=105 Identities=12% Similarity=0.159 Sum_probs=69.1
Q ss_pred ccccChhhhhHHHHHH-----HHHHHHHHHHHHhhcCCcccc---hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhH
Q 036474 31 WKIFTPDQCSGINRFV-----AVFAVPLLSFHFISLNDPYAM---NYHFIAADSLQKVVILAALFLWQAFTKHGNLEWMI 102 (646)
Q Consensus 31 ~glfs~e~~~~LnrFV-----~~~ALPALLF~~lA~~~l~~l---~~~filay~l~~ll~f~l~~l~ar~~~~~~~~~~a 102 (646)
.++++++..+..+.|. +|+-.-||+--++...|-.-+ -.+|+...+++.+.+++++.+...++.....+
T Consensus 6 ~~~~p~~~~~~~~~fm~~~~Fl~fyIa~LI~GSIL~m~Rk~Lik~~~r~~p~il~g~~~a~~~g~lvG~l~G~~~~~--- 82 (347)
T TIGR00783 6 YNILPQNVIDATSNFMKGSNFLYLYIACLIVGSILGMNRKLLLKALMRFIPPALIGMVLAVIVGILVGTLFGLGFDH--- 82 (347)
T ss_pred eCCCCHHHHHHHHHHHccCChHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhH---
Confidence 3889999999998874 678888999999988877653 56777788888888887777777665554333
Q ss_pred Hhh--hh---cccCcccccHHHHHHH-hhcCChhhHHHHHHH
Q 036474 103 TLF--SL---STLPNTLVMGIPLLKA-MYGDDSGSLMVQVVV 138 (646)
Q Consensus 103 al~--al---asfsNtgfmGiPLl~a-LfG~eal~~l~livv 138 (646)
+++ .+ +.--+-|.+.+....+ ..|.++..+..+.+.
T Consensus 83 ~~~~i~lPIm~GG~GaGavPLS~~Y~~~~g~~~~~~~s~~ip 124 (347)
T TIGR00783 83 SLMYIVMPIMAGGVGAGIVPLSIIYSAITGRSSEEIFSQLIP 124 (347)
T ss_pred hhheeeehhcCCCcccchhhHHHHHHHHhCCCHHHHHHHHHH
Confidence 222 22 2223345555544444 557666655555443
No 73
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=26.36 E-value=67 Score=30.10 Aligned_cols=23 Identities=9% Similarity=0.156 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 036474 69 YHFIAADSLQKVVILAALFLWQA 91 (646)
Q Consensus 69 ~~filay~l~~ll~f~l~~l~ar 91 (646)
|.+++.+++..+++|++++...|
T Consensus 2 W~l~~iii~~i~l~~~~~~~~~r 24 (130)
T PF12273_consen 2 WVLFAIIIVAILLFLFLFYCHNR 24 (130)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHH
Confidence 55566555544444443333333
No 74
>PF10766 DUF2592: Protein of unknown function (DUF2592); InterPro: IPR019702 This entry represents proteins with unknown function, and appear to be restricted to Enterobacteriaceae. Some members are annotated as ybhY.
Probab=26.28 E-value=1.1e+02 Score=23.76 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=19.8
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHH
Q 036474 491 IMVWRKLIRNPNTYSSVLGLIWSLV 515 (646)
Q Consensus 491 ~~vlkkllkNP~IiAiilGLilsll 515 (646)
++..-.++.-|+++|+++|+++.+-
T Consensus 3 kSl~fa~iMVPVvma~ilglIyGlG 27 (41)
T PF10766_consen 3 KSLAFAVIMVPVVMALILGLIYGLG 27 (41)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455567778999999999999864
No 75
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=25.94 E-value=1e+03 Score=27.00 Aligned_cols=114 Identities=18% Similarity=0.113 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhHHHHHHHHHhhhccccchhhhcchhHHHHHHHHHHHHHHHHHHH
Q 036474 502 NTYSSVLGLIWSLVSYRWHIKMPTIMSGSISILSDAGLGMAMFSLGLFMALQPKIIACGKSVATFAMAVRFLTGPAVIAA 581 (646)
Q Consensus 502 ~IiAiilGLilsll~~r~gI~LP~~L~~tL~~Lg~aa~PLALf~LG~sLa~~~~~~~~~~k~v~~~vliKLIv~PLLa~l 581 (646)
..+..+.|++...... +...|+...+.-..+ ....|.-||.-|..+.... .++.++.+......=.++.=+..-.
T Consensus 33 i~~~ll~g~i~g~~~l--~~~~~~~~~~~el~~-~l~l~ilLf~~g~~l~~~~--l~~~~~~I~~La~~~v~it~~~~g~ 107 (429)
T COG0025 33 IPLLLLLGLLGGPPGL--NLISPDLELDPELFL-VLFLAILLFAGGLELDLRE--LRRVWRSILVLALPLVLITALGIGL 107 (429)
T ss_pred hHHHHHHHHHHhhhhh--ccccccccCChHHHH-HHHHHHHHHHhHhcCCHHH--HHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555553211 223332222222222 8889999999999998752 3444544443333333332222223
Q ss_pred HHHHhCCChHHHHHHHHHhc--cch-hhHHHHHHHHcCCChhH
Q 036474 582 TSIAIGLRGVLLHIAIVQAA--LPQ-GIVPFVFAKEYNVHPDI 621 (646)
Q Consensus 582 l~~l~gL~~~~~~vlVL~AA--mP~-Av~~~V~A~~Yg~d~el 621 (646)
+.+++ +++.....+.+.+| .|+ ++...-+..+++.+.+.
T Consensus 108 ~~~~l-~~~i~~~~a~l~gAilspTDPv~v~~i~~~~~vp~ri 149 (429)
T COG0025 108 LAHWL-LPGIPLAAAFLLGAILSPTDPVAVSPIFKRVRVPKRI 149 (429)
T ss_pred HHHHH-hCChhHHHHHHHhHHhcCCCchhhHHHHhcCCCCHHH
Confidence 33344 33444444444444 344 33334445667775443
No 76
>PF11299 DUF3100: Protein of unknown function (DUF3100); InterPro: IPR021450 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=25.39 E-value=1.2e+02 Score=32.04 Aligned_cols=115 Identities=11% Similarity=0.183 Sum_probs=0.0
Q ss_pred HHHhhhHHHHHHHHHHHHHHhhcCCC-CCCHHHHHHHHHHHHhHHHHHHHHHhhhccccchhhhcchhHHHHHHHHHHHH
Q 036474 496 KLIRNPNTYSSVLGLIWSLVSYRWHI-KMPTIMSGSISILSDAGLGMAMFSLGLFMALQPKIIACGKSVATFAMAVRFLT 574 (646)
Q Consensus 496 kllkNP~IiAiilGLilsll~~r~gI-~LP~~L~~tL~~Lg~aa~PLALf~LG~sLa~~~~~~~~~~k~v~~~vliKLIv 574 (646)
++..-|++||+++|++++.. .+ .++.++.+--...+.....++++.++..+...- ......+.-...-+++
T Consensus 18 ~i~llPmlyA~iig~~~~~~----~~~~~~k~~~~~~~~~a~~~~~~~ll~l~ak~g~~v----Gp~i~~i~~aGpALil 89 (241)
T PF11299_consen 18 KIVLLPMLYALIIGMALGPQ----KLKPLKKIISEKEMKFAGKLVGIALLPLIAKLGTTV----GPNIPKILSAGPALIL 89 (241)
T ss_pred eeehHHHHHHHHHHHHhcch----hhcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHh----cccHHHHHHhhHHHHH
Q ss_pred H-------HHHHHHHHHHhCCChHHHHHHHHHhccchhhHHHHHHHHcCCChhH
Q 036474 575 G-------PAVIAATSIAIGLRGVLLHIAIVQAALPQGIVPFVFAKEYNVHPDI 621 (646)
Q Consensus 575 ~-------PLLa~ll~~l~gL~~~~~~vlVL~AAmP~Av~~~V~A~~Yg~d~el 621 (646)
+ .++.+-+..++|+..+......=.+==| +..+++++||.|..+
T Consensus 90 QE~GnlGTillaLPiAllLGlkREaIGat~SI~REp---~laiI~ekYGldSpE 140 (241)
T PF11299_consen 90 QEFGNLGTILLALPIALLLGLKREAIGATFSIGREP---NLAIISEKYGLDSPE 140 (241)
T ss_pred HHhcchhhHHHHhHHHHHhcccHHhhcceeecccCc---ceeeeehhcCCCCcc
No 77
>COG3329 Predicted permease [General function prediction only]
Probab=25.22 E-value=8.1e+02 Score=27.26 Aligned_cols=53 Identities=13% Similarity=0.335 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhHHHHHHHHHhhh
Q 036474 487 RLILIMVWRKLIRNPNTYSSVLGLIWSLVSYRWHIKMPTIMSGSISILSDAGLGMAMFSLGLF 549 (646)
Q Consensus 487 ~~il~~vlkkllkNP~IiAiilGLilsll~~r~gI~LP~~L~~tL~~Lg~aa~PLALf~LG~s 549 (646)
...+....++ +.+|.+.=.++|++...+ +-++.+|+.+.+.+.+ .-|++||..
T Consensus 5 s~fl~~f~~n-L~sP~llFf~~Gmlia~~--ksdl~iP~~i~~~lsl-------yLL~aIG~k 57 (372)
T COG3329 5 SEFLMDFVGN-LLSPTLLFFILGMLIAAF--KSDLEIPEAIYQALSL-------YLLLAIGFK 57 (372)
T ss_pred HHHHHHHHhh-hccchHHHHHHHHHHHHH--hccccCchHHHHHHHH-------HHHHHHhcc
Confidence 3355666777 469999999999999987 3367899988887764 356677753
No 78
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=24.77 E-value=9.9e+02 Score=26.58 Aligned_cols=45 Identities=29% Similarity=0.476 Sum_probs=34.4
Q ss_pred HHHHhccchhhHHHH-------HHHHcCCChhHHHHHHHHHHHHHHHHHHHH
Q 036474 596 AIVQAALPQGIVPFV-------FAKEYNVHPDILSTAVIFGMLIALPITILY 640 (646)
Q Consensus 596 lVL~AAmP~Av~~~V-------~A~~Yg~d~elASsaVllSTLLSLpl~i~l 640 (646)
-.+..++|..+.++. +++.|+.|++....++.+++++.+.+.++|
T Consensus 184 ~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~~ai~~Gs~i~lv~yl~w 235 (394)
T PF03222_consen 184 SYILPALPVLVFSFGFHNIVPSLVKYLGGDPKKIRKAIIIGSLIPLVMYLLW 235 (394)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 344578888777665 467899999999999999999885554444
No 79
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=24.58 E-value=66 Score=30.75 Aligned_cols=35 Identities=26% Similarity=0.348 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHhccc-cChh---hhhHHHHHHH
Q 036474 13 AIVPLYVAMILAYGSVRWWKI-FTPD---QCSGINRFVA 47 (646)
Q Consensus 13 ~ilPVFlLI~LGyla~R~~gl-fs~e---~~~~LnrFV~ 47 (646)
.++|..++-++||+..||+|| |++- ..+.|++.|-
T Consensus 8 ~i~paa~~gavGY~Y~wwKGws~sD~M~vTrr~m~~A~~ 46 (126)
T PF07889_consen 8 LIVPAAAIGAVGYGYMWWKGWSFSDLMFVTRRSMSDAVA 46 (126)
T ss_pred hhhHHHHHHHHHheeeeecCCchhHHHHHHHHhHHHHHH
Confidence 467999999999999998888 5542 3455555543
No 80
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=24.46 E-value=3.3e+02 Score=27.61 Aligned_cols=44 Identities=18% Similarity=0.282 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhHHHHHHHHHhhhccccc
Q 036474 503 TYSSVLGLIWSLVSYRWHIKMPTIMSGSISILSDAGLGMAMFSLGLFMALQP 554 (646)
Q Consensus 503 IiAiilGLilsll~~r~gI~LP~~L~~tL~~Lg~aa~PLALf~LG~sLa~~~ 554 (646)
+.+.++|+++.++ ... | .+..+.+.....-+-||.+|+.+...+
T Consensus 2 l~~li~Gi~lG~~----~~~-~---~~~~~~~~~~~L~lLLF~VGi~lG~~~ 45 (191)
T PF03956_consen 2 LIALILGILLGYF----LRP-P---FSLIDKISTYALYLLLFLVGIDLGSNR 45 (191)
T ss_pred eeeHHHHHHHHHH----hcc-c---ccccccHHHHHHHHHHHHHHHHhcCCH
Confidence 3456778888776 211 1 222266777889999999999998753
No 81
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=24.42 E-value=6.3e+02 Score=27.43 Aligned_cols=58 Identities=16% Similarity=0.180 Sum_probs=40.8
Q ss_pred hhH-HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhHHHHHHHHHhhhccccchhhhcchhH
Q 036474 500 NPN-TYSSVLGLIWSLVSYRWHIKMPTIMSGSISILSDAGLGMAMFSLGLFMALQPKIIACGKSV 563 (646)
Q Consensus 500 NP~-IiAiilGLilsll~~r~gI~LP~~L~~tL~~Lg~aa~PLALf~LG~sLa~~~~~~~~~~k~ 563 (646)
-|. ++++++-.+++-+ ..+|+.+.+.++.+++...-++|.++|+....+. .++.++|.
T Consensus 243 ~P~FvlgFl~~~~l~s~-----~~~~~~~~~~~~~~s~~~~~~A~aaiGl~~~~~~-l~~~G~kp 301 (305)
T PF03601_consen 243 FPWFVLGFLAASLLNSL-----GLLPAAVVSALKSLSKWLFALAMAAIGLSTNFKD-LKQVGWKP 301 (305)
T ss_pred cCHHHHHHHHHHHHHHH-----hhhHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHH-HHhcCccc
Confidence 454 4444444444443 3467889999999999999999999999998863 33444443
No 82
>PF04235 DUF418: Protein of unknown function (DUF418); InterPro: IPR007349 Tihs is a probable integral membrane protein. It is usually found associated with (IPR007299 from INTERPRO).
Probab=24.35 E-value=6.2e+02 Score=24.07 Aligned_cols=67 Identities=18% Similarity=0.149 Sum_probs=35.7
Q ss_pred cChhhhhHHHHHHHHHHHHHHHHHHhhcCCcccchhHHHHHHHHHHH-HHHHHHHHHHHHHhcCCcch
Q 036474 34 FTPDQCSGINRFVAVFAVPLLSFHFISLNDPYAMNYHFIAADSLQKV-VILAALFLWQAFTKHGNLEW 100 (646)
Q Consensus 34 fs~e~~~~LnrFV~~~ALPALLF~~lA~~~l~~l~~~filay~l~~l-l~f~l~~l~ar~~~~~~~~~ 100 (646)
+.+-+.-.|+.++....+=.++|...--.-..++.......+.++.. +..++..+|.|+++++|.|+
T Consensus 87 l~~~GrmaLT~Yi~qsii~~~lf~~~~l~l~~~~~~~~~~~~~~~i~~~q~~~s~~W~~~f~~GPlE~ 154 (163)
T PF04235_consen 87 LAAVGRMALTNYILQSIIGTLLFYGYGLGLFGHLSPAQSLLIALGIWVVQLLFSYLWLRRFRRGPLEW 154 (163)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcHHH
Confidence 33445666777777766666666544222222343332222322222 22333467788888888886
No 83
>COG1968 BacA Undecaprenyl pyrophosphate phosphatase [Lipid transport and metabolism]
Probab=24.23 E-value=8.2e+02 Score=26.42 Aligned_cols=97 Identities=13% Similarity=0.094 Sum_probs=56.8
Q ss_pred hHHHHHHHHHhhhccccchh---------hhcchhHHHHHHHHHHHHH-HHH-----HHHHHHHhCCChHHHHHHHHHhc
Q 036474 537 AGLGMAMFSLGLFMALQPKI---------IACGKSVATFAMAVRFLTG-PAV-----IAATSIAIGLRGVLLHIAIVQAA 601 (646)
Q Consensus 537 aa~PLALf~LG~sLa~~~~~---------~~~~~k~v~~~vliKLIv~-PLL-----a~ll~~l~gL~~~~~~vlVL~AA 601 (646)
..+..+|++.|+.+-...+. ..-.+++.+.+-+...+.. |-+ +.....++|++.....=.--..+
T Consensus 116 ~~va~~lIv~gi~li~~e~~~~~~~~~~~~~l~~~da~~IGlaQ~lAl~PG~SRSGaTI~~~lllG~~r~~AaefSFlLa 195 (270)
T COG1968 116 RVVAIALIVGGILLILAEKLNKKPRLRDLDDLTLRDALIIGLAQCLALIPGTSRSGATISGGLLLGLSREAAAEFSFLLA 195 (270)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccCcCChhhCCHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 45666677777666442211 1224556665555554443 533 33445678999888877778889
Q ss_pred cchhhHHHHHHHHcCCChhHHHHH--HHHHHHHH
Q 036474 602 LPQGIVPFVFAKEYNVHPDILSTA--VIFGMLIA 633 (646)
Q Consensus 602 mP~Av~~~V~A~~Yg~d~elASsa--VllSTLLS 633 (646)
+|+..-+..+.-.-..+.-..... +.++++.+
T Consensus 196 IP~m~GA~~l~l~k~~~~~~~~~~~~l~vg~i~A 229 (270)
T COG1968 196 IPAMFGASALDLFKSGDALSAADLPILLVGFIVA 229 (270)
T ss_pred HHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHHH
Confidence 999888888775544333333222 45555555
No 84
>PF09925 DUF2157: Predicted membrane protein (DUF2157); InterPro: IPR018677 This family of various hypothetical prokaryotic proteins has no known function.
Probab=24.17 E-value=6.2e+02 Score=23.97 Aligned_cols=50 Identities=18% Similarity=0.261 Sum_probs=32.7
Q ss_pred CCChHHHHHHHHHhccchhhHHHHHHHHcCCChhHHHHHHHHHHHHHHHHH
Q 036474 587 GLRGVLLHIAIVQAALPQGIVPFVFAKEYNVHPDILSTAVIFGMLIALPIT 637 (646)
Q Consensus 587 gL~~~~~~vlVL~AAmP~Av~~~V~A~~Yg~d~elASsaVllSTLLSLpl~ 637 (646)
.-++.....+.+.+++=.+....+++|-|+.+.+.......+ .++.+|+.
T Consensus 85 ~~~~~~~~~l~~l~~~l~ga~ialigQ~y~~~~~~~~~~~~W-~~~~l~~~ 134 (145)
T PF09925_consen 85 RRSPRLAEALLLLGAVLFGALIALIGQIYQTGADPWQLFLLW-ALLALPLA 134 (145)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHhHhcCCCchHHHHHHH-HHHHHHHH
Confidence 345556666666666667788888888888887776555554 44445544
No 85
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=23.92 E-value=5.3e+02 Score=27.76 Aligned_cols=58 Identities=9% Similarity=0.088 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccChhhhhHHHHH--HHHHHHHHHHHHHhhcCCccc---chhHH
Q 036474 6 DIYDVLAAIVPLYVAMILAYGSVRWWKIFTPDQCSGINRF--VAVFAVPLLSFHFISLNDPYA---MNYHF 71 (646)
Q Consensus 6 dM~~IL~~ilPVFlLI~LGyla~R~~glfs~e~~~~LnrF--V~~~ALPALLF~~lA~~~l~~---l~~~f 71 (646)
+|.+.+...+-...=..++...- ++.+.+..| +--+.+|.-+..++.+.++.. ++|.+
T Consensus 234 ~~~~~~~~~l~~l~d~~~s~is~--------~~N~imk~LTi~s~iflPpTlIagiyGMNf~~mPel~~~~ 296 (322)
T COG0598 234 EMLEALRERLSSLLDAYLSLINN--------NQNEIMKILTIVSTIFLPPTLITGFYGMNFKGMPELDWPY 296 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhhHHHHcccccCCCCCcCCCCcc
Confidence 44444444444444444444444 344444444 445668888888999988885 46666
No 86
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=23.37 E-value=2e+02 Score=29.60 Aligned_cols=62 Identities=13% Similarity=0.161 Sum_probs=31.4
Q ss_pred CCCCHHHHHHHHHHHHhHHHHHHHHHhhhccccchhhhcchhHHHHHHHHHHHHHHHHHHHHH
Q 036474 521 IKMPTIMSGSISILSDAGLGMAMFSLGLFMALQPKIIACGKSVATFAMAVRFLTGPAVIAATS 583 (646)
Q Consensus 521 I~LP~~L~~tL~~Lg~aa~PLALf~LG~sLa~~~~~~~~~~k~v~~~vliKLIv~PLLa~ll~ 583 (646)
+++|++..+.=..=-..+.++.++.+|..+........... .++.++++=++..|+...++.
T Consensus 28 lRfPD~YtRLHAATKa~TLGv~LILlgv~l~~~~~~~~~sl-klLLiIvFllLTaPVaSHaIA 89 (197)
T PRK12585 28 IRLPDVYTRTHAAGISNTFGVSLLLFATVGYFFHSGEGFNA-RVLLAVLFIFLTTPVASHLIN 89 (197)
T ss_pred HhcCcHHHHhhccccchhhhHHHHHHHHHHHHHhccchHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 57898777654333334455666666655432110000112 233444444667777776664
No 87
>PF03817 MadL: Malonate transporter MadL subunit; InterPro: IPR004690 The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM. The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=22.40 E-value=5.2e+02 Score=24.84 Aligned_cols=79 Identities=10% Similarity=0.048 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHhccccChhhhhHHHHHHHHHHHHHHHHHHhhcCCcccc--hhHHHHHHHHHHHHHHHHHHHHHH
Q 036474 14 IVPLYVAMILAYGSVRWWKIFTPDQCSGINRFVAVFAVPLLSFHFISLNDPYAM--NYHFIAADSLQKVVILAALFLWQA 91 (646)
Q Consensus 14 ilPVFlLI~LGyla~R~~glfs~e~~~~LnrFV~~~ALPALLF~~lA~~~l~~l--~~~filay~l~~ll~f~l~~l~ar 91 (646)
-+-++++|++...+.| +|+++++..+++...- -.-+|..+=-+-.++=...+ -+.-+++-..+.+++|++.-++.|
T Consensus 37 GiAMlLLI~~~~~l~k-~g~l~~~te~Gi~FW~-amYIPIVVAMAA~QNVv~Al~gG~~Allagi~av~~~~~~ip~lsr 114 (125)
T PF03817_consen 37 GIAMLLLIFARLWLQK-KGLLSKPTEQGIEFWS-AMYIPIVVAMAAQQNVVAALSGGPVALLAGIGAVAVCFLLIPLLSR 114 (125)
T ss_pred HHHHHHHHHHHHHHHH-cCCCChHHHhHHHHHH-ccHHHHHHHHhhhhhhHHhhcCCcchHHHHHHHHHHHHHHHHHHHh
Confidence 3567889999999999 7999999999987431 22246655444444433334 333344455666677777777777
Q ss_pred HHh
Q 036474 92 FTK 94 (646)
Q Consensus 92 ~~~ 94 (646)
+-+
T Consensus 115 ~g~ 117 (125)
T PF03817_consen 115 IGR 117 (125)
T ss_pred cCC
Confidence 643
No 88
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=22.30 E-value=4.4e+02 Score=29.02 Aligned_cols=67 Identities=24% Similarity=0.244 Sum_probs=42.4
Q ss_pred hhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhHHHHHHHHHhhhccccchhhhcchhHHHHHHHHHHHHHHHHH
Q 036474 500 NPNTYSSVLGLIWSLVSYRWHIKMPTIMSGSISILSDAGLGMAMFSLGLFMALQPKIIACGKSVATFAMAVRFLTGPAVI 579 (646)
Q Consensus 500 NP~IiAiilGLilsll~~r~gI~LP~~L~~tL~~Lg~aa~PLALf~LG~sLa~~~~~~~~~~k~v~~~vliKLIv~PLLa 579 (646)
-|+++++++| + +-+-+.+.+.--....+|.--|++|..+.... ..+....-++..+.+-++-.+...
T Consensus 176 lPlliG~ilG----------N--LD~~~r~fl~~~~~~lIpFf~FaLGaginl~~-i~~aGl~GIlLGl~v~~vtG~~~~ 242 (314)
T TIGR00793 176 LPFLVGFALG----------N--LDPELRDFFSKAVQTLIPFFAFALGNTIDLGV-IIQTGLLGILLGVSVIILTGIPLI 242 (314)
T ss_pred HHHHHHHHHh----------c--CCHHHHHHhccCCCeeeehhhhhhcCCCCHHH-HHHhCcchHHHHHHHHHHHhHHHH
Confidence 4777766666 2 33557777777777889999999999999863 333444444444444444443333
No 89
>PF06942 GlpM: GlpM protein; InterPro: IPR009707 This family consists of several bacterial GlpM membrane proteins. GlpM is a hydrophobic protein containing 109 amino acids. It is thought that GlpM may play a role in alginate biosynthesis in Pseudomonas aeruginosa [].
Probab=22.26 E-value=6.6e+02 Score=23.61 Aligned_cols=77 Identities=10% Similarity=0.169 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccChhhhhHHHHHHHHHHHHHHHHHHhhc--CCcccchhHHHHHHHHHHHHHHHHHHH
Q 036474 11 LAAIVPLYVAMILAYGSVRWWKIFTPDQCSGINRFVAVFAVPLLSFHFISL--NDPYAMNYHFIAADSLQKVVILAALFL 88 (646)
Q Consensus 11 L~~ilPVFlLI~LGyla~R~~glfs~e~~~~LnrFV~~~ALPALLF~~lA~--~~l~~l~~~filay~l~~ll~f~l~~l 88 (646)
+-.++|.|.+|+-=..... -+.|+.+.-..|=++-.+|-++|....= .+.-++.+.+..+.....+.+.++...
T Consensus 27 LvPLFPTFALIahyiVg~e----r~~~~lr~T~lFgi~siipy~~yL~svy~~~~~~~l~~aL~~a~~~W~iaA~~Li~~ 102 (107)
T PF06942_consen 27 LVPLFPTFALIAHYIVGSE----RGMEALRTTALFGIWSIIPYAAYLLSVYYFSDRMRLPLALLGAVLVWLIAAWVLILL 102 (107)
T ss_pred HHHHhHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457888888877544444 2678888888888888888888754321 111112344444444444444455555
Q ss_pred HHH
Q 036474 89 WQA 91 (646)
Q Consensus 89 ~ar 91 (646)
|.|
T Consensus 103 w~~ 105 (107)
T PF06942_consen 103 WSR 105 (107)
T ss_pred HHh
Confidence 554
No 90
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=21.95 E-value=1.2e+03 Score=27.14 Aligned_cols=131 Identities=12% Similarity=0.024 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhccccChhhhhHHHHHHHHHHHHHHHHHHhhcCCcccc--hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 036474 16 PLYVAMILAYGSVRWWKIFTPDQCSGINRFVAVFAVPLLSFHFISLNDPYAM--NYHFIAADSLQKVVILAALFLWQAFT 93 (646)
Q Consensus 16 PVFlLI~LGyla~R~~glfs~e~~~~LnrFV~~~ALPALLF~~lA~~~l~~l--~~~filay~l~~ll~f~l~~l~ar~~ 93 (646)
+..+.+++|.+.+-. .....-..+. ..++++.+|.++|.+-.+.+..++ ++.-+..+.+...+.=.+...+.-++
T Consensus 24 ~~v~lil~Gi~lg~~-~~~~~~~~~~--~~~~~~~Lp~lLF~~g~~~~~~~l~~~~~~i~~la~~~vlit~~~v~~~~~~ 100 (525)
T TIGR00831 24 YPIALILAGLLLGLA-GLLPEVPLDR--EIVLFLFLPPLLFEAAMNTDLRELRENFRPIALIAFLLVVVTTVVVGFSLNW 100 (525)
T ss_pred HHHHHHHHHHHHHhc-cccCCCCCCH--HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hcCCcchhHHhhhh-cccCcccccHHHHHHHhhcCChhh-HHHHHHHHHHHHHHHHHHHHHHh
Q 036474 94 KHGNLEWMITLFSL-STLPNTLVMGIPLLKAMYGDDSGS-LMVQVVVLQSVIWYTLMLFMFEY 154 (646)
Q Consensus 94 ~~~~~~~~aal~al-asfsNtgfmGiPLl~aLfG~eal~-~l~livvv~~lil~~l~lvLmE~ 154 (646)
--..++ ...+.+ +..+-|- .+.+.+++.+..+. -+..++..++++-=..+++++..
T Consensus 101 -~~~l~~-~~alllGails~TD---pvav~~il~~~~~p~rl~~il~gESllND~~alvlf~~ 158 (525)
T TIGR00831 101 -ILGIPL-ALALILGAVLSPTD---AVAVLGTFKSIRAPKKLSILLEGESLLNDGAALVVFAI 158 (525)
T ss_pred -HhcccH-HHHHHHHHHhCCCC---HHHHHHHHhcCCCCHHHHHHHhhhhhhcchHHHHHHHH
No 91
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=21.86 E-value=4.3e+02 Score=29.10 Aligned_cols=65 Identities=22% Similarity=0.194 Sum_probs=42.9
Q ss_pred hhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhHHHHHHHHHhhhccccchhhhcchhHHHHHHHHHHHHHHH
Q 036474 500 NPNTYSSVLGLIWSLVSYRWHIKMPTIMSGSISILSDAGLGMAMFSLGLFMALQPKIIACGKSVATFAMAVRFLTGPA 577 (646)
Q Consensus 500 NP~IiAiilGLilsll~~r~gI~LP~~L~~tL~~Lg~aa~PLALf~LG~sLa~~~~~~~~~~k~v~~~vliKLIv~PL 577 (646)
-|+++++++| .+-+-+.+.+.--....+|.-=|++|..+..+. ..+....-++..+++=++..+.
T Consensus 176 lP~iiG~iLG------------NLD~~~r~fl~~~~~~lIPF~~f~lGa~inl~~-i~~aGl~GIlLgv~~~~vtg~~ 240 (314)
T PF03812_consen 176 LPIIIGMILG------------NLDPDFRKFLAPGVPILIPFFGFALGAGINLSN-IIKAGLSGILLGVIVVVVTGIP 240 (314)
T ss_pred HHHHHHHHHh------------cCCHHHHHHHhcCCCeeeehhhhhhcCCCCHHH-HHHhCcchHHHHHHHHHHHhHH
Confidence 4777777766 234567778888888889999999999999874 3344444444444444333333
No 92
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=21.56 E-value=4.9e+02 Score=24.79 Aligned_cols=24 Identities=8% Similarity=0.246 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 036474 6 DIYDVLAAIVPLYVAMILAYGSVR 29 (646)
Q Consensus 6 dM~~IL~~ilPVFlLI~LGyla~R 29 (646)
++..++++++-++...+.||...+
T Consensus 78 qls~v~Nilvsv~~~~~~~~~~~~ 101 (142)
T PF11712_consen 78 QLSTVFNILVSVFAVFFAGWYWAG 101 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345577777777777777775544
No 93
>PF09515 Thia_YuaJ: Thiamine transporter protein (Thia_YuaJ); InterPro: IPR012651 Members of this protein family have been assigned as thiamine transporters by a phylogenomic analysis of families of genes regulated by the THI element, a broadly conserved RNA secondary structure element through which thiamine pyrophosphate (TPP) levels can regulate transcription of many genes related to thiamine transport, salvage, and de novo biosynthesis. Species with this protein always lack the ThiBPQ ABC transporter. In some species (e.g. Streptococcus mutans and Streptococcus pyogenes), YuaJ is the only THI-regulated gene. The thiamine transporter YuaJ, also known as ThiT, is a member of the energy coupling factor (ECF) transporters, a new class of transport proteins that shares some resemblance with ABC transporters [, ]. ; PDB: 3RLB_B.
Probab=21.45 E-value=5.6e+02 Score=25.76 Aligned_cols=117 Identities=17% Similarity=0.257 Sum_probs=51.5
Q ss_pred HhhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhHHHHHHHHHhhhccccc-h-hhh--------cchhHHHHH
Q 036474 498 IRNPNTYSSVLGLIWSLVSYRWHIKMPTIMSGSISILSDAGLGMAMFSLGLFMALQP-K-IIA--------CGKSVATFA 567 (646)
Q Consensus 498 lkNP~IiAiilGLilsll~~r~gI~LP~~L~~tL~~Lg~aa~PLALf~LG~sLa~~~-~-~~~--------~~~k~v~~~ 567 (646)
+|.=...+++.|+++.++++-.| |..+....+.+=+--.|.+.+.+.......- + ... .-..-.+..
T Consensus 40 ~r~G~~~G~~~G~l~Gll~~~~g---~~~~~~p~q~llDY~laf~~lGlaGlf~~~~~~~~~~~~~~~~~~~i~~g~~i~ 116 (177)
T PF09515_consen 40 FRRGWKAGILAGFLYGLLQFLLG---PAYIVHPVQVLLDYPLAFGALGLAGLFAKPLQKTLKNNRYKKSYLNIILGTFIA 116 (177)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHTT----S--SSHHHHHHHHTHHHHHGGGGGGG-----------SSS--HHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHHHHHhC---CceehhHHHHHHHHHHHHHHHHHHHhcccccchhhhhcccchhHHHHHHHHHHH
Confidence 45566778888888877732223 1133334444444444444444444444310 0 000 011122334
Q ss_pred HHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhccchhhHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHH
Q 036474 568 MAVRFLTGPAVIAATSIAIGLRGVLLHIAIVQAALPQGIVPFVFAKEYNVHPDILSTAVIFGMLIALPITI 638 (646)
Q Consensus 568 vliKLIv~PLLa~ll~~l~gL~~~~~~vlVL~AAmP~Av~~~V~A~~Yg~d~elASsaVllSTLLSLpl~i 638 (646)
.+.|++.|=+-. +.+--.-.|.+.++.+++--||. +.++.++++++.+..
T Consensus 117 ~~~r~~~h~isG---------------vif~~~yAp~g~~~~~YS~~yN~------sy~l~~~~i~~iv~~ 166 (177)
T PF09515_consen 117 VFLRYFCHFISG---------------VIFFGSYAPEGMNPWLYSFIYNG------SYMLPELLITLIVLS 166 (177)
T ss_dssp HHHHHHHHHHHH---------------HHH-GGG--TT--HHHHHHHHHH------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---------------HHHHHHhCcCcccHHHHHHHHHH------HHHHHHHHHHHHHHH
Confidence 455555553333 22323335777888999988886 344555555544433
No 94
>PF11992 DUF3488: Domain of unknown function (DUF3488); InterPro: IPR021878 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is typically between 323 to 339 amino acids in length. This domain is found associated with PF01841 from PFAM. This domain has a conserved PLW sequence motif. This domain contains 6 transmembrane helices.
Probab=20.40 E-value=1.1e+03 Score=25.47 Aligned_cols=21 Identities=24% Similarity=0.543 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 036474 624 TAVIFGMLIALPITILYYVLL 644 (646)
Q Consensus 624 saVllSTLLSLpl~i~l~~LL 644 (646)
.....-.+.++|++.++++++
T Consensus 157 ~~~~~l~l~alpl~~vlFl~f 177 (325)
T PF11992_consen 157 RRALKLLLQALPLALVLFLLF 177 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 333444445678777766653
No 95
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=20.09 E-value=2.9e+02 Score=31.12 Aligned_cols=58 Identities=3% Similarity=-0.101 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCcccc--hhH-HHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 036474 42 INRFVAVFAVPLLSFHFISLNDPYAM--NYH-FIAADSLQKVVILAALFLWQAFTKHGNLE 99 (646)
Q Consensus 42 LnrFV~~~ALPALLF~~lA~~~l~~l--~~~-filay~l~~ll~f~l~~l~ar~~~~~~~~ 99 (646)
.-+.+-.+++=.++-.++++.++.++ .+. ++.....+.+..++..+++.++..+++.|
T Consensus 274 ~i~~I~~~sLdlfl~~AlmsL~L~~l~~~a~Plliil~~q~i~~~l~~~fv~fr~mg~~yd 334 (398)
T TIGR00210 274 AVSVIGNVSLSLFLAIALMSLQLWELADLAGPIALILLVQVMFMALYAIFVTFRLMGKDYD 334 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhccchHH
Confidence 55667778888888889999988884 333 33334444444444444444444444455
Done!