Query 036474
Match_columns 646
No_of_seqs 363 out of 1709
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 03:21:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036474.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036474hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zux_A Transporter, ASBTNM; tr 99.1 7.3E-10 2.5E-14 116.7 17.2 145 490-643 9-154 (332)
2 3zux_A Transporter, ASBTNM; tr 94.4 0.39 1.3E-05 50.3 13.2 76 71-149 230-308 (332)
3 2zy9_A Mg2+ transporter MGTE; 43.5 2.8E+02 0.0095 29.9 13.9 91 540-632 357-454 (473)
4 3if4_A Integron cassette prote 20.0 51 0.0018 29.4 2.3 43 190-232 26-71 (119)
5 3rhw_A Avermectin-sensitive gl 12.3 5.1E+02 0.018 26.3 8.0 49 8-60 215-263 (347)
6 4ev6_A Magnesium transport pro 11.9 2.6E+02 0.0088 28.6 5.5 43 35-77 272-321 (339)
7 3rlb_A THIT; S-component, ECF 8.7 7E+02 0.024 23.9 7.0 37 497-533 58-95 (192)
8 2kdc_A Diacylglycerol kinase; 8.7 8.4E+02 0.029 21.7 7.1 62 579-640 41-115 (121)
9 2gsm_B Cytochrome C oxidase su 7.9 4E+02 0.014 26.8 5.1 25 6-30 34-58 (262)
10 1cn3_F Fragment of coat protei 6.8 2.4E+02 0.0083 19.1 1.8 12 358-369 2-13 (29)
No 1
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=99.14 E-value=7.3e-10 Score=116.66 Aligned_cols=145 Identities=16% Similarity=0.120 Sum_probs=118.3
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhHHHHHHHHHhhhccccch-hhhcchhHHHHHH
Q 036474 490 LIMVWRKLIRNPNTYSSVLGLIWSLVSYRWHIKMPTIMSGSISILSDAGLGMAMFSLGLFMALQPK-IIACGKSVATFAM 568 (646)
Q Consensus 490 l~~vlkkllkNP~IiAiilGLilsll~~r~gI~LP~~L~~tL~~Lg~aa~PLALf~LG~sLa~~~~-~~~~~~k~v~~~v 568 (646)
++++. +.+.++..+.+++++++.++ .|+... .++..-..+.++.||.+|+.+....- ...++++......
T Consensus 9 l~~~~-~~l~~~~~l~i~~~~~lg~~-------~P~~~~-~~~~~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l 79 (332)
T 3zux_A 9 LSKIS-SFIGKTFSLWAALFAAAAFF-------APDTFK-WAGPYIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGV 79 (332)
T ss_dssp HHHHH-HHHHHTHHHHHHHHHHHHHH-------CGGGTG-GGGGGHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHH-------cchhhh-hhHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHH
Confidence 34443 45688999999999999888 554322 23344456889999999999998641 1124667778889
Q ss_pred HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhccchhhHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 036474 569 AVRFLTGPAVIAATSIAIGLRGVLLHIAIVQAALPQGIVPFVFAKEYNVHPDILSTAVIFGMLIALPITILYYVL 643 (646)
Q Consensus 569 liKLIv~PLLa~ll~~l~gL~~~~~~vlVL~AAmP~Av~~~V~A~~Yg~d~elASsaVllSTLLSLpl~i~l~~L 643 (646)
+++++++|++++++..++++++.....+++.+++|+++.+.+++..+|.|.+.+...+.++|++++.+++++..+
T Consensus 80 ~~~~vi~Pll~~~l~~~~~l~~~~~~Glil~~~~P~~~~s~v~t~~a~Gd~~la~~~~~~stll~~~~~Pl~~~l 154 (332)
T 3zux_A 80 IAQFAIMPATAWCLSKLLNLPAEIAVGVILVGCCPGGTASNVMTYLARGNVALSVAVTSVSTLTSPLLTPAIFLM 154 (332)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCTHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhcCCchhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999996666655444
No 2
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=94.39 E-value=0.39 Score=50.30 Aligned_cols=76 Identities=12% Similarity=0.003 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcchhHHhhhh-cccCcccccHHHHHHHhhc--CChhhHHHHHHHHHHHHHHHH
Q 036474 71 FIAADSLQKVVILAALFLWQAFTKHGNLEWMITLFSL-STLPNTLVMGIPLLKAMYG--DDSGSLMVQVVVLQSVIWYTL 147 (646)
Q Consensus 71 filay~l~~ll~f~l~~l~ar~~~~~~~~~~aal~al-asfsNtgfmGiPLl~aLfG--~eal~~l~livvv~~lil~~l 147 (646)
.+....+-.++.|+++++++|+++....+ ....++ ++.-|++ +|+++....|| +....+.+.+...|++.-..+
T Consensus 230 v~~~~~l~~~~~~~lg~~~~r~~~~~~~~--~~ti~~e~G~qNs~-lai~lA~~~F~~~p~~alp~~iy~~~q~i~~~~l 306 (332)
T 3zux_A 230 IFAVVVLHNGIGYLLGFFAAKWTGLPYDA--QKALTIEVGMQNSG-LAAALAAAHFAAAPVVAVPGALFSVWHNISGSLL 306 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCHHH--HHHHHHHHHCCCHH-HHHHHHHHHSTTCGGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHhH--hhhhhhhhhhccHH-HHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHH
Confidence 33334444455666667777765543223 334455 7778885 99999999995 345567777777766655444
Q ss_pred HH
Q 036474 148 ML 149 (646)
Q Consensus 148 ~l 149 (646)
+-
T Consensus 307 a~ 308 (332)
T 3zux_A 307 AT 308 (332)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 3
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=43.55 E-value=2.8e+02 Score=29.90 Aligned_cols=91 Identities=10% Similarity=-0.019 Sum_probs=51.1
Q ss_pred HHHHHHHhhhccccc--hhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhCCChH-----HHHHHHHHhccchhhHHHHHH
Q 036474 540 GMAMFSLGLFMALQP--KIIACGKSVATFAMAVRFLTGPAVIAATSIAIGLRGV-----LLHIAIVQAALPQGIVPFVFA 612 (646)
Q Consensus 540 PLALf~LG~sLa~~~--~~~~~~~k~v~~~vliKLIv~PLLa~ll~~l~gL~~~-----~~~vlVL~AAmP~Av~~~V~A 612 (646)
-.++++=|+.+.... ...+.-+|.+...++.=+++..++....+.+++ ... ...++.+..|.=.|+...++.
T Consensus 357 ~~t~~ir~la~~~~~~~~~~~~~~ke~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~v~~a~~~~~~~a~~~g~~~p~~~ 435 (473)
T 2zy9_A 357 SATLIIRALATRDLDLRDWRRVFLKEMGVGLLLGLTLSFLLVGKVYWDGH-PLLLPVVGVSLVLIVFFANLVGAMLPFLL 435 (473)
T ss_dssp HHHHHHHHHHTTSSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-TTSHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455554332 111223455555555555555555554444455 211 223334445556677778889
Q ss_pred HHcCCChhHHHHHHHHHHHH
Q 036474 613 KEYNVHPDILSTAVIFGMLI 632 (646)
Q Consensus 613 ~~Yg~d~elASsaVllSTLL 632 (646)
.++|.||..+++ .++||+.
T Consensus 436 ~~~~~DPa~~s~-p~itt~~ 454 (473)
T 2zy9_A 436 RRLGVDPALVSN-PLVATLS 454 (473)
T ss_dssp HHHTCCGGGSCH-HHHHHHH
T ss_pred HHcCCCcccccc-chHHHHH
Confidence 999999999964 5677764
No 4
>3if4_A Integron cassette protein HFX_CASS5; integron cassette protein mobIle metagenome structural genomics PSI-2 protein structure initiative midwest center for structural genomics; HET: MSE; 2.18A {Unidentified}
Probab=20.04 E-value=51 Score=29.36 Aligned_cols=43 Identities=26% Similarity=0.285 Sum_probs=29.2
Q ss_pred cccccccCCCCceEEEEeecCCccccccccccC---CCCccccCCC
Q 036474 190 LQTDAEIGDDGKLHVVVRRSSASSIVSSFNKSH---GLNSLTSMTP 232 (646)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 232 (646)
....-|++..|+|||+...|+=+-|+|+-+.-+ +..++.+..|
T Consensus 26 ~ia~IEvd~~Grihv~p~~s~FpYIYREAmEV~Wd~~~k~lhSP~P 71 (119)
T 3if4_A 26 FVAAIEIDGTGRIHVTPGESQFPYIYREAMEVSWNESTRSLHSPVP 71 (119)
T ss_dssp EEEEEEECTTSCEEEEESSCCCTTGGGGCSSCEEETTTTEEECCCC
T ss_pred HHHHeeeccCCcEEEeeCCCcCceeeeeheeeeeccCcccccCCCC
Confidence 445579999999999998887777777654433 3344444344
No 5
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*
Probab=12.30 E-value=5.1e+02 Score=26.32 Aligned_cols=49 Identities=10% Similarity=0.097 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccChhhhhHHHHHHHHHHHHHHHHHHhh
Q 036474 8 YDVLAAIVPLYVAMILAYGSVRWWKIFTPDQCSGINRFVAVFAVPLLSFHFIS 60 (646)
Q Consensus 8 ~~IL~~ilPVFlLI~LGyla~R~~glfs~e~~~~LnrFV~~~ALPALLF~~lA 60 (646)
+-+++.++|.++++++-++.-. ++++....=-.+-+...|=...|..+.
T Consensus 215 ~y~~~l~iP~~li~~ls~~sF~----lp~~~~~~Rv~lgit~lLt~tv~~~~~ 263 (347)
T 3rhw_A 215 FYLLQLYIPSCMLVIVSWVSFW----FDRTAIPARVTLGVTTLLTMTAQSAGI 263 (347)
T ss_dssp HHHHHTHHHHHHHHHHHHTTTT----SCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeehhHHHHHHHhheEEe----ccCCCCcceEEEEeehHHHHHHHHHHH
Confidence 5588999999999999999774 576653221223344444444444433
No 6
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=11.85 E-value=2.6e+02 Score=28.61 Aligned_cols=43 Identities=7% Similarity=-0.158 Sum_probs=26.7
Q ss_pred ChhhhhHHHHHH--HHHHHHHHHHHHhhcCCcccc-----hhHHHHHHHH
Q 036474 35 TPDQCSGINRFV--AVFAVPLLSFHFISLNDPYAM-----NYHFIAADSL 77 (646)
Q Consensus 35 s~e~~~~LnrFV--~~~ALPALLF~~lA~~~l~~l-----~~~filay~l 77 (646)
+.++.+.+..|. --+.+|.-+..++.+.++..+ .++|+++.++
T Consensus 272 s~~~N~~mk~LTiit~IflP~T~IaGiyGMNf~~mPel~~~~gy~~~l~~ 321 (339)
T 4ev6_A 272 NIKMNQIMKILTMVTTIFAVPMWITGIYGMNFSYLPLANNPQGFWLVMAL 321 (339)
T ss_dssp HHHHHHHHHHHHHHHHHSSHHHHHHHHTTCCCSCCTTSSCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCcCCCCCCccCchHHHHHHHH
Confidence 344455555443 345689999999999988743 4555554443
No 7
>3rlb_A THIT; S-component, ECF transporter, ABC transporter, substrate-BIN domain, membrane, thiamine-binding protein; HET: BNG VIB; 2.00A {Lactococcus lactis subsp}
Probab=8.74 E-value=7e+02 Score=23.89 Aligned_cols=37 Identities=22% Similarity=0.253 Sum_probs=21.9
Q ss_pred HHhhhHHHHHHHHHHHHHHhhcCCCC-CCHHHHHHHHH
Q 036474 497 LIRNPNTYSSVLGLIWSLVSYRWHIK-MPTIMSGSISI 533 (646)
Q Consensus 497 llkNP~IiAiilGLilsll~~r~gI~-LP~~L~~tL~~ 533 (646)
-++.=+..++++|+++.++.+-.+-. ...++...+++
T Consensus 58 a~~~Gp~~G~~~g~i~gll~~i~g~~~~~~p~q~lldy 95 (192)
T 3rlb_A 58 SLRRGLTAGLVGGLIWGILSMITGHAYILSLSQAFLEY 95 (192)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHTTCSCCSSHHHHHHHH
T ss_pred HHHHChHHHHHHHHHHHHHHHHhCCccccchHHHHHHH
Confidence 35566778888888888874322322 33455555554
No 8
>2kdc_A Diacylglycerol kinase; membrane protein, solution kinase, DAGK, cell inner membrane, cell membrane, membrane, phospholipid biosynthesis; NMR {Escherichia coli}
Probab=8.71 E-value=8.4e+02 Score=21.74 Aligned_cols=62 Identities=16% Similarity=0.156 Sum_probs=33.5
Q ss_pred HHHHHHHhCCChHHHHHHHHHhccch---hhHHHHHHH------HcCCC----hhHHHHHHHHHHHHHHHHHHHH
Q 036474 579 IAATSIAIGLRGVLLHIAIVQAALPQ---GIVPFVFAK------EYNVH----PDILSTAVIFGMLIALPITILY 640 (646)
Q Consensus 579 a~ll~~l~gL~~~~~~vlVL~AAmP~---Av~~~V~A~------~Yg~d----~elASsaVllSTLLSLpl~i~l 640 (646)
+..+..+++++......+++...+-. ..|+.+=+. +|+-- .|.+|.+|+++.+.++.++...
T Consensus 41 ~i~~~~~l~~s~~e~~~li~~i~lVl~~EllNTAIE~vvD~v~~e~h~lak~AKD~aaaAVlv~~~~a~~v~~~i 115 (121)
T 2kdc_A 41 AVVIACWLDVDAITRVLLISSVMLVMIVEILNSAIEAVVDRIGSEYHELSGRAKDMGSAAVLIAIIVAVITWCIL 115 (121)
T ss_dssp HHHHHHHCCCCCSHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCSCTTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345567777665544444333322 233333221 22211 4788999999998887665443
No 9
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 3omi_B* 3om3_B* 3oma_B* 3omn_B* 1m56_B* 1m57_B*
Probab=7.92 E-value=4e+02 Score=26.77 Aligned_cols=25 Identities=20% Similarity=0.517 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 036474 6 DIYDVLAAIVPLYVAMILAYGSVRW 30 (646)
Q Consensus 6 dM~~IL~~ilPVFlLI~LGyla~R~ 30 (646)
|..-++..++-+++..++-|.+.|+
T Consensus 34 ~~~~~i~~~I~v~V~~ll~~~~~r~ 58 (262)
T 2gsm_B 34 GFILVIIAAITIFVTLLILYAVWRF 58 (262)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444555556666776553
No 10
>1cn3_F Fragment of coat protein VP2; viral coat protein VP1, viral coat protein VP2, viral entry, viral protein; 2.20A {Polyomavirus}
Probab=6.78 E-value=2.4e+02 Score=19.09 Aligned_cols=12 Identities=67% Similarity=1.204 Sum_probs=6.7
Q ss_pred CCCCCCCCCCCC
Q 036474 358 GGGSGGGAAPAG 369 (646)
Q Consensus 358 ~~~~~~~~~~~~ 369 (646)
+||.|+++|+-+
T Consensus 2 gggggggaashq 13 (29)
T 1cn3_F 2 GGGGGGGAASHQ 13 (29)
T ss_dssp CCCCCSTTTCCC
T ss_pred CCCCCCcccccc
Confidence 445556666544
Done!