Query 036474
Match_columns 646
No_of_seqs 363 out of 1709
Neff 4.9
Searched_HMMs 13730
Date Mon Mar 25 03:22:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036474.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/036474hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 36.6 1.5E+02 0.011 26.9 13.3 19 12-30 294-312 (447)
2 d2e74f1 f.23.25.1 (F:1-32) Pet 17.1 64 0.0047 20.9 3.4 20 10-29 5-24 (32)
3 d1u00a2 b.130.1.1 (A:389-503) 9.5 89 0.0065 25.5 3.0 44 169-212 60-103 (115)
4 d1dkza2 b.130.1.1 (A:389-506) 8.4 1.2E+02 0.0084 24.9 3.4 44 169-212 63-106 (118)
5 d1oedc_ f.36.1.1 (C:) Acetylch 6.4 1.8E+02 0.013 25.6 3.9 23 7-29 2-24 (260)
6 d1pv7a_ f.38.1.2 (A:) Lactose 5.7 7.6E+02 0.055 20.8 12.9 51 102-152 347-400 (417)
7 d1oede_ f.36.1.1 (E:) Acetylch 5.3 1.2E+02 0.0089 26.9 2.0 47 8-59 3-50 (260)
8 d2iuba2 f.17.3.1 (A:286-349) M 4.9 2.5E+02 0.018 20.1 3.2 21 46-66 12-32 (64)
9 d2nwwa1 f.49.1.1 (A:12-416) Pr 4.6 1.1E+03 0.081 21.8 9.1 32 53-84 200-233 (405)
10 d1oedb_ f.36.1.1 (B:) Acetylch 4.2 2.7E+02 0.02 24.3 3.6 22 8-29 3-24 (250)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=36.61 E-value=1.5e+02 Score=26.92 Aligned_cols=19 Identities=5% Similarity=-0.047 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 036474 12 AAIVPLYVAMILAYGSVRW 30 (646)
Q Consensus 12 ~~ilPVFlLI~LGyla~R~ 30 (646)
..+.-++..+..|++..|+
T Consensus 294 ~~~~~~~~~~~~g~~~~~~ 312 (447)
T d1pw4a_ 294 YEYAGIPGTLLCGWMSDKV 312 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred chhhhhhhhhhhhhhhhhc
Confidence 3344455666677777764
No 2
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=17.12 E-value=64 Score=20.85 Aligned_cols=20 Identities=15% Similarity=0.203 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 036474 10 VLAAIVPLYVAMILAYGSVR 29 (646)
Q Consensus 10 IL~~ilPVFlLI~LGyla~R 29 (646)
++++.+--|.+|++||..+-
T Consensus 5 il~aa~lsfglifvgwglga 24 (32)
T d2e74f1 5 MLYAALLSFGLIFVGWGLGV 24 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHhHHHH
Confidence 56677778999999998875
No 3
>d1u00a2 b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]}
Probab=9.48 E-value=89 Score=25.50 Aligned_cols=44 Identities=18% Similarity=0.249 Sum_probs=34.3
Q ss_pred cCcccceeecCcccccCCCCCcccccccCCCCceEEEEeecCCc
Q 036474 169 AGSITSFRVDSDVVSLNGREPLQTDAEIGDDGKLHVVVRRSSAS 212 (646)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (646)
+..++.|.+++--=.-.|..++.-.-+++.||.|+|..+.-...
T Consensus 60 N~~lg~~~l~~ip~~p~G~~~I~Vtf~id~nGiL~V~A~d~~tg 103 (115)
T d1u00a2 60 CRSLARFALRGIPALPAGGAHIRVTFQVDADGLLSVTAMEKSTG 103 (115)
T ss_dssp SEEEEEEEECCCCCCSTTCSCEEEEEEECTTCCEEEEEEETTTC
T ss_pred ceEeeEEEEeCcccCccccccEEEEEEccCCceEEEEEEECCCC
Confidence 44577777776555556777888999999999999999887544
No 4
>d1dkza2 b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxId: 562]}
Probab=8.44 E-value=1.2e+02 Score=24.91 Aligned_cols=44 Identities=23% Similarity=0.363 Sum_probs=34.4
Q ss_pred cCcccceeecCcccccCCCCCcccccccCCCCceEEEEeecCCc
Q 036474 169 AGSITSFRVDSDVVSLNGREPLQTDAEIGDDGKLHVVVRRSSAS 212 (646)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (646)
+..++.|.+++.-=.-.|..+++-.-+++.||.|+|+.++-...
T Consensus 63 n~~lg~~~i~~ip~~p~G~~~I~Vtf~iD~nGiL~V~a~d~~tg 106 (118)
T d1dkza2 63 NKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSG 106 (118)
T ss_dssp SEEEEEEEEECCCSCCTTCSCEEEEEEECTTCCEEEEEEETTTC
T ss_pred ceEEEEEEEcCCccCCCCCcEEEEEEEecCCCeEEEEEEECCCC
Confidence 44688888876655556777788889999999999999887544
No 5
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=6.39 E-value=1.8e+02 Score=25.57 Aligned_cols=23 Identities=22% Similarity=0.259 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 036474 7 IYDVLAAIVPLYVAMILAYGSVR 29 (646)
Q Consensus 7 M~~IL~~ilPVFlLI~LGyla~R 29 (646)
++-+++.++|.+++.++-++.-.
T Consensus 2 l~y~~n~~~P~~~~~~l~~~~f~ 24 (260)
T d1oedc_ 2 LFYVINFITPCVLISFLASLAFY 24 (260)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEhHHHHHHHHHHHHHHHee
Confidence 35688999999999999988875
No 6
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=5.66 E-value=7.6e+02 Score=20.81 Aligned_cols=51 Identities=14% Similarity=0.080 Sum_probs=22.4
Q ss_pred HHhhhh-cccCc-cc-ccHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHHHHHH
Q 036474 102 ITLFSL-STLPN-TL-VMGIPLLKAMYGDDSGSLMVQVVVLQSVIWYTLMLFMF 152 (646)
Q Consensus 102 aal~al-asfsN-tg-fmGiPLl~aLfG~eal~~l~livvv~~lil~~l~lvLm 152 (646)
+...++ ..+.+ .+ .+|.++...++..-+......+..+-.++...+..+++
T Consensus 347 ~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l 400 (417)
T d1pv7a_ 347 ATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTL 400 (417)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455554 34444 33 45555555554333333333333333344444444444
No 7
>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=5.32 E-value=1.2e+02 Score=26.94 Aligned_cols=47 Identities=11% Similarity=0.125 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccChhh-hhHHHHHHHHHHHHHHHHHHh
Q 036474 8 YDVLAAIVPLYVAMILAYGSVRWWKIFTPDQ-CSGINRFVAVFAVPLLSFHFI 59 (646)
Q Consensus 8 ~~IL~~ilPVFlLI~LGyla~R~~glfs~e~-~~~LnrFV~~~ALPALLF~~l 59 (646)
+-+++.++|.+++.++-++.-. ++++. .+-++ +.+...|=..+|..+
T Consensus 3 yY~~~lilP~~li~~ls~~~F~----lp~~~~g~Rv~-l~it~lLs~~~~~~~ 50 (260)
T d1oede_ 3 FYIINIIAPCVLISSLVVLVYF----LPAQAGGQKCT-LSISVLLAQTIFLFL 50 (260)
T ss_dssp SHHHHHHTHHHHHHHHHHHHHH----HHHTCCTTHHH-HHHHHHHHHHHHHHH
T ss_pred EEEEhHHHHHHHHHHHHHHheE----ecCCCCCCcEE-eehhHHHHHHHHHHH
Confidence 4578899999999999998875 46654 22222 444444444444433
No 8
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=4.88 E-value=2.5e+02 Score=20.09 Aligned_cols=21 Identities=19% Similarity=-0.040 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHhhcCCccc
Q 036474 46 VAVFAVPLLSFHFISLNDPYA 66 (646)
Q Consensus 46 V~~~ALPALLF~~lA~~~l~~ 66 (646)
+--+.+|.-+..++-..+...
T Consensus 12 it~iflP~t~i~gifGMN~~~ 32 (64)
T d2iuba2 12 IATIFMPLTFIAGIYGMNFEY 32 (64)
T ss_dssp HHHHHHHHHHHTTSCC-----
T ss_pred HHHHHHHHHHHHhhhccCCCC
Confidence 445678888888888877654
No 9
>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]}
Probab=4.56 E-value=1.1e+03 Score=21.79 Aligned_cols=32 Identities=9% Similarity=-0.091 Sum_probs=15.8
Q ss_pred HHHHHHhhcCCcccc--hhHHHHHHHHHHHHHHH
Q 036474 53 LLSFHFISLNDPYAM--NYHFIAADSLQKVVILA 84 (646)
Q Consensus 53 ALLF~~lA~~~l~~l--~~~filay~l~~ll~f~ 84 (646)
+++...+++.+.+.+ -..|++.++++.++.++
T Consensus 200 ~l~a~~~~~~g~~~l~~l~~~~~~~~~~~~l~~~ 233 (405)
T d2nwwa1 200 ALIAYVMAEQGVHVVGELAKVTAAVYVGLTLQIL 233 (405)
T ss_dssp HHHHHHHHHTGGGCCTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 333444555666554 34455555555554333
No 10
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=4.22 E-value=2.7e+02 Score=24.27 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 036474 8 YDVLAAIVPLYVAMILAYGSVR 29 (646)
Q Consensus 8 ~~IL~~ilPVFlLI~LGyla~R 29 (646)
+-+++.++|.+++.++-++.-.
T Consensus 3 ~y~~~~~~P~~~i~~l~~~~f~ 24 (250)
T d1oedb_ 3 FYIVYTIIPCILISILAILVFY 24 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeHHHHHHHHHHHHHHHhe
Confidence 5688999999999999888775
Done!