BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036482
(177 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OSD|A Chain A, Crystal Structure Of Oxidized Merp From Ralstonia
Metallidurans Ch34
pdb|1OSD|B Chain B, Crystal Structure Of Oxidized Merp From Ralstonia
Metallidurans Ch34
Length = 72
Score = 30.0 bits (66), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 37 MDCEGCEKRIRRAISKIDVFNQFDVQF 63
M C C +++AISK++ ++ DV F
Sbjct: 12 MTCSACPITVKKAISKVEGVSKVDVTF 38
>pdb|4A48|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A48|B Chain B, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A4J|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
Length = 69
Score = 30.0 bits (66), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 37 MDCEGCEKRIRRAISKIDVFNQFDVQFSFD 66
MDC C I RAI+K+ V F+ +
Sbjct: 11 MDCTSCASSIERAIAKVPGVQSCQVNFALE 40
>pdb|4A47|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A47|B Chain B, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A47|C Chain C, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A47|D Chain D, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
Length = 63
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 16/71 (22%)
Query: 37 MDCEGCEKRIRRAISKIDVFNQFDVQFSFDFIITGVDSLDIDMDKQKVTVTGYVDERKVL 96
MDC C + + +A+ D Q VQ +D+ +KVT+T + E ++
Sbjct: 9 MDCTSCAEAVTKAVQNEDA--QATVQ--------------VDLTSKKVTITSALGEEQLR 52
Query: 97 KVVRRTGRKAE 107
+ G + E
Sbjct: 53 TAIASAGHEVE 63
>pdb|2ROE|A Chain A, Solution Structure Of Thermus Thermophilus Hb8 Ttha1718
Protein In Vitro
pdb|2ROG|A Chain A, Solution Structure Of Thermus Thermophilus Hb8 Ttha1718
Protein In Living E. Coli Cells
Length = 66
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 16/73 (21%)
Query: 37 MDCEGCEKRIRRAISKIDVFNQFDVQFSFDFIITGVDSLDIDMDKQKVTVTGYVDERKVL 96
M C C + +A+ K+ GV+ +++ ++K + V G D + ++
Sbjct: 9 MTCNHCVMAVTKALKKVP----------------GVEKVEVSLEKGEALVEGTADPKALV 52
Query: 97 KVVRRTGRKAEFW 109
+ V G KAE
Sbjct: 53 QAVEEEGYKAEVL 65
>pdb|1AFI|A Chain A, Structure Of The Reduced Form Of Merp, The Periplasmic
Protein From The Bacterial Mercury Detoxification
System, Nmr, 20 Structures
pdb|1AFJ|A Chain A, Structure Of The Mercury-Bound Form Of Merp, The
Periplasmic Protein From The Bacterial Mercury
Detoxification System, Nmr, 20 Structures
pdb|2HQI|A Chain A, Nmr Solution Structure Of The Oxidized Form Of Merp, 14
Structures
Length = 72
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 27 AMAIVELMV-HMDCEGCEKRIRRAISKIDVFNQFDVQF 63
A V L V M C C +++A+SK++ ++ DV F
Sbjct: 1 ATQTVTLAVPGMTCAACPITVKKALSKVEGVSKVDVGF 38
>pdb|2CRL|A Chain A, The Apo Form Of Hma Domain Of Copper Chaperone For
Superoxide Dismutase
Length = 98
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/81 (19%), Positives = 35/81 (43%), Gaps = 16/81 (19%)
Query: 26 NAMAIVELMVHMDCEGCEKRIRRAISKIDVFNQFDVQFSFDFIITGVDSLDIDMDKQKVT 85
+ +E V M C+ C +R+++ + GV +++ ++ Q V
Sbjct: 16 GTLCTLEFAVQMTCQSCVDAVRKSLQG----------------VAGVQDVEVHLEDQMVL 59
Query: 86 VTGYVDERKVLKVVRRTGRKA 106
V + ++V ++ TGR+A
Sbjct: 60 VHTTLPSQEVQALLEGTGRQA 80
>pdb|3CJK|A Chain A, Crystal Structure Of The Adduct Hah1-Cd(Ii)-Mnk1
Length = 68
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 17/80 (21%)
Query: 32 ELMVHMDCEGCEKRIRRAISKIDVFNQFDVQFSFDFIITGVDSLDIDMDKQKVTVTGYVD 91
E V M C GC + + R ++K+ G DID+ +KV +
Sbjct: 4 EFSVDMTCGGCAEAVSRVLNKL-----------------GGVKYDIDLPNKKVCIESEHS 46
Query: 92 ERKVLKVVRRTGRKAEFWPF 111
+L +++TG+ +
Sbjct: 47 MDTLLATLKKTGKTVSYLGL 66
>pdb|1FE4|A Chain A, Crystal Structure Of Mercury-Hah1
pdb|1FE4|B Chain B, Crystal Structure Of Mercury-Hah1
pdb|1FEE|A Chain A, Crystal Structure Of Copper-Hah1
pdb|1FEE|B Chain B, Crystal Structure Of Copper-Hah1
pdb|1FE0|A Chain A, Crystal Structure Of Cadmium-Hah1
pdb|1FE0|B Chain B, Crystal Structure Of Cadmium-Hah1
pdb|1TL4|A Chain A, Solution Structure Of Cu(i) Hah1
pdb|1TL5|A Chain A, Solution Structure Of Apohah1
pdb|2K1R|B Chain B, The Solution Nmr Structure Of The Complex Between Mnk1 And
Hah1 Mediated By Cu(I)
pdb|3IWL|A Chain A, Crystal Structure Of Cisplatin Bound To A Human Copper
Chaperone (Monomer)
pdb|3IWX|A Chain A, Crystal Structure Of Cisplatin Bound To A Human Copper
Chaperone (Dimer)
pdb|3IWX|B Chain B, Crystal Structure Of Cisplatin Bound To A Human Copper
Chaperone (Dimer)
Length = 68
Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 17/80 (21%)
Query: 32 ELMVHMDCEGCEKRIRRAISKIDVFNQFDVQFSFDFIITGVDSLDIDMDKQKVTVTGYVD 91
E V M C GC + + R ++K+ G DID+ +KV +
Sbjct: 5 EFSVDMTCGGCAEAVSRVLNKL-----------------GGVKYDIDLPNKKVCIESEHS 47
Query: 92 ERKVLKVVRRTGRKAEFWPF 111
+L +++TG+ +
Sbjct: 48 MDTLLATLKKTGKTVSYLGL 67
>pdb|1SB6|A Chain A, Solution Structure Of A Cyanobacterial Copper
Metallochaperone, Scatx1
pdb|2XMT|A Chain A, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1
Form)
pdb|2XMT|B Chain B, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1
Form)
pdb|2XMU|A Chain A, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu2
Form)
pdb|2XMU|B Chain B, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu2
Form)
pdb|2XMJ|A Chain A, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites:atx1 Side-To-Side (Aerobic)
pdb|2XMJ|B Chain B, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites:atx1 Side-To-Side (Aerobic)
pdb|2XMK|A Chain A, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites: Atx1 Side-To-Side (Anaerobic)
pdb|2XMK|B Chain B, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites: Atx1 Side-To-Side (Anaerobic)
Length = 64
Score = 26.9 bits (58), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 16/71 (22%)
Query: 37 MDCEGCEKRIRRAISKIDVFNQFDVQFSFDFIITGVDSLDIDMDKQKVTVTGYVDERKVL 96
+ CE C + + +A+ D Q VQ +D+ +KVT+T + E ++
Sbjct: 10 IACEACAEAVTKAVQNEDA--QATVQ--------------VDLTSKKVTITSALGEEQLR 53
Query: 97 KVVRRTGRKAE 107
+ G + E
Sbjct: 54 TAIASAGHEVE 64
>pdb|4A46|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A46|B Chain B, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A46|C Chain C, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A46|D Chain D, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
Length = 63
Score = 26.9 bits (58), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 16/71 (22%)
Query: 37 MDCEGCEKRIRRAISKIDVFNQFDVQFSFDFIITGVDSLDIDMDKQKVTVTGYVDERKVL 96
+ CE C + + +A+ D Q VQ +D+ +KVT+T + E ++
Sbjct: 9 IACEACAEAVTKAVQNEDA--QATVQ--------------VDLTSKKVTITSALGEEQLR 52
Query: 97 KVVRRTGRKAE 107
+ G + E
Sbjct: 53 TAIASAGHEVE 63
>pdb|1CC7|A Chain A, Crystal Structure Of The Atx1 Metallochaperone Protein
pdb|1CC8|A Chain A, Crystal Structure Of The Atx1 Metallochaperone Protein
pdb|2GGP|A Chain A, Solution Structure Of The Atx1-Cu(I)-Ccc2a Complex
pdb|1FES|A Chain A, Solution Structure Of The Apo Form Of The Yeast
Metallochaperone, Atx1
pdb|3K7R|A Chain A, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|B Chain B, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|C Chain C, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|D Chain D, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|E Chain E, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|F Chain F, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|G Chain G, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|H Chain H, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|I Chain I, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|J Chain J, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|K Chain K, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|L Chain L, Crystal Structure Of [tm][cuatx1]3
Length = 73
Score = 26.2 bits (56), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 15/72 (20%)
Query: 35 VHMDCEGCEKRIRRAISKIDVFNQFDVQFSFDFIITGVDSLDIDMDKQKVTVTGYVDERK 94
V M C GC + + ++K++ V +DI ++KQ V V +
Sbjct: 11 VVMTCSGCSGAVNKVLTKLE---------------PDVSKIDISLEKQLVDVYTTLPYDF 55
Query: 95 VLKVVRRTGRKA 106
+L+ +++TG++
Sbjct: 56 ILEKIKKTGKEV 67
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.140 0.450
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,762,505
Number of Sequences: 62578
Number of extensions: 230486
Number of successful extensions: 637
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 630
Number of HSP's gapped (non-prelim): 14
length of query: 177
length of database: 14,973,337
effective HSP length: 92
effective length of query: 85
effective length of database: 9,216,161
effective search space: 783373685
effective search space used: 783373685
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (23.1 bits)