Query 036490
Match_columns 557
No_of_seqs 160 out of 1527
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 02:37:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036490.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036490hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02344 chap_CCT_gamma T-com 100.0 2E-106 4E-111 877.0 60.5 521 6-527 3-523 (525)
2 TIGR02339 thermosome_arch ther 100.0 6E-106 1E-110 872.2 60.4 515 6-524 3-518 (519)
3 KOG0361 Chaperonin complex com 100.0 3E-107 6E-112 786.7 39.7 521 1-531 2-528 (543)
4 TIGR02347 chap_CCT_zeta T-comp 100.0 1E-104 2E-109 859.2 61.4 515 6-528 3-528 (531)
5 cd03335 TCP1_alpha TCP-1 (CTT 100.0 1E-104 2E-109 863.3 60.1 510 14-526 3-526 (527)
6 cd03343 cpn60 cpn60 chaperonin 100.0 2E-104 4E-109 861.4 60.2 514 7-525 3-516 (517)
7 PTZ00212 T-complex protein 1 s 100.0 9E-104 2E-108 855.2 61.1 512 4-527 7-527 (533)
8 cd03339 TCP1_epsilon TCP-1 (CT 100.0 6E-104 1E-108 857.3 59.4 516 3-524 5-526 (526)
9 TIGR02343 chap_CCT_epsi T-comp 100.0 7E-104 1E-108 855.3 59.5 516 4-525 10-531 (532)
10 cd03336 TCP1_beta TCP-1 (CTT o 100.0 1E-103 3E-108 852.2 61.3 508 8-527 2-515 (517)
11 cd03340 TCP1_eta TCP-1 (CTT or 100.0 2E-103 4E-108 853.0 60.9 511 6-525 3-519 (522)
12 TIGR02340 chap_CCT_alpha T-com 100.0 9E-103 2E-107 848.9 62.0 513 13-528 6-532 (536)
13 TIGR02342 chap_CCT_delta T-com 100.0 9E-103 2E-107 845.2 59.6 507 14-525 4-516 (517)
14 TIGR02345 chap_CCT_eta T-compl 100.0 1E-102 3E-107 844.7 58.6 512 4-525 3-519 (522)
15 cd03338 TCP1_delta TCP-1 (CTT 100.0 4E-102 8E-107 842.3 59.5 507 13-525 2-515 (515)
16 TIGR02341 chap_CCT_beta T-comp 100.0 8E-102 2E-106 836.5 61.4 509 7-527 2-516 (519)
17 TIGR02346 chap_CCT_theta T-com 100.0 1E-101 3E-106 836.9 61.2 511 7-527 5-521 (531)
18 cd03342 TCP1_zeta TCP-1 (CTT o 100.0 3E-100 7E-105 818.2 56.4 479 10-525 3-482 (484)
19 cd03337 TCP1_gamma TCP-1 (CTT 100.0 3E-100 7E-105 818.5 53.4 476 6-524 3-479 (480)
20 KOG0358 Chaperonin complex com 100.0 1.2E-98 3E-103 725.5 35.4 508 12-525 19-533 (534)
21 KOG0363 Chaperonin complex com 100.0 1.2E-97 3E-102 715.4 38.6 518 3-532 2-525 (527)
22 cd03341 TCP1_theta TCP-1 (CTT 100.0 4.6E-95 1E-99 777.0 54.0 463 15-525 4-471 (472)
23 cd00309 chaperonin_type_I_II c 100.0 5.9E-95 1.3E-99 778.3 54.9 462 14-524 3-464 (464)
24 COG0459 GroL Chaperonin GroEL 100.0 3.2E-94 6.8E-99 766.3 50.7 506 12-530 4-518 (524)
25 KOG0364 Chaperonin complex com 100.0 2.2E-94 4.7E-99 708.0 29.4 524 1-529 1-524 (527)
26 PF00118 Cpn60_TCP1: TCP-1/cpn 100.0 8E-92 1.7E-96 761.7 51.5 483 31-527 1-485 (485)
27 PRK12849 groEL chaperonin GroE 100.0 1.3E-89 2.9E-94 740.8 52.6 459 14-528 5-525 (542)
28 PRK00013 groEL chaperonin GroE 100.0 1.4E-89 3E-94 740.7 52.6 460 14-527 5-525 (542)
29 PRK12851 groEL chaperonin GroE 100.0 5.5E-89 1.2E-93 736.8 53.8 461 14-529 6-527 (541)
30 PRK12850 groEL chaperonin GroE 100.0 2.3E-88 5E-93 732.4 54.2 461 14-529 6-527 (544)
31 PTZ00114 Heat shock protein 60 100.0 3.7E-88 8.1E-93 733.3 54.7 463 13-529 16-543 (555)
32 cd03344 GroEL GroEL_like type 100.0 9.2E-88 2E-92 724.9 52.7 455 14-524 3-519 (520)
33 PRK12852 groEL chaperonin GroE 100.0 1.9E-87 4E-92 727.2 53.6 461 14-529 6-528 (545)
34 KOG0360 Chaperonin complex com 100.0 1.4E-89 3.1E-94 680.1 31.4 514 13-530 13-540 (545)
35 TIGR02348 GroEL chaperonin Gro 100.0 3E-87 6.6E-92 722.4 51.6 457 14-526 4-522 (524)
36 CHL00093 groEL chaperonin GroE 100.0 5.5E-86 1.2E-90 713.4 47.8 461 14-527 5-526 (529)
37 PRK14104 chaperonin GroEL; Pro 100.0 4.5E-85 9.8E-90 706.2 52.6 460 14-528 6-527 (546)
38 KOG0362 Chaperonin complex com 100.0 2.8E-85 6E-90 654.1 47.0 507 6-528 12-523 (537)
39 PLN03167 Chaperonin-60 beta su 100.0 1.4E-85 3E-90 713.6 48.0 464 14-529 59-584 (600)
40 KOG0359 Chaperonin complex com 100.0 2.5E-83 5.5E-88 629.0 27.9 495 18-525 16-514 (520)
41 KOG0357 Chaperonin complex com 100.0 6.3E-69 1.4E-73 512.8 22.5 385 2-527 9-397 (400)
42 KOG0356 Mitochondrial chaperon 100.0 1.2E-58 2.5E-63 470.4 30.2 460 13-530 18-541 (550)
43 cd03334 Fab1_TCP TCP-1 like do 100.0 1E-39 2.2E-44 322.3 27.5 235 164-408 17-257 (261)
44 cd03333 chaperonin_like chaper 100.0 1.9E-35 4.2E-40 284.3 24.7 208 148-404 2-209 (209)
45 KOG0230 Phosphatidylinositol-4 99.9 1.2E-23 2.6E-28 234.8 18.0 239 165-413 332-575 (1598)
46 PF02579 Nitro_FeMo-Co: Dinitr 49.7 68 0.0015 25.7 6.6 38 278-316 45-82 (94)
47 cd00851 MTH1175 This uncharact 45.8 60 0.0013 26.5 5.8 39 277-316 54-92 (103)
48 COG1433 Uncharacterized conser 45.2 96 0.0021 26.8 6.9 51 278-329 57-107 (121)
49 cd00562 NifX_NifB This CD repr 36.9 97 0.0021 25.1 5.7 37 279-316 54-90 (102)
50 PRK13600 putative ribosomal pr 31.7 2.1E+02 0.0046 23.0 6.5 51 276-329 19-73 (84)
51 PRK13601 putative L7Ae-like ri 29.5 2.4E+02 0.0053 22.5 6.5 51 277-330 15-69 (82)
52 cd01143 YvrC Periplasmic bindi 27.9 1.8E+02 0.004 26.5 6.7 50 280-329 54-110 (195)
53 KOG1481 Cysteine synthase [Ami 26.7 33 0.00072 34.0 1.3 57 354-412 46-102 (391)
54 TIGR03659 IsdE heme ABC transp 26.3 1.6E+02 0.0036 29.2 6.4 51 280-330 85-141 (289)
55 cd01144 BtuF Cobalamin binding 25.9 1.9E+02 0.0042 27.6 6.7 51 280-330 51-108 (245)
56 PF02603 Hpr_kinase_N: HPr Ser 25.8 70 0.0015 27.8 3.1 45 271-315 66-112 (127)
57 PRK07283 hypothetical protein; 25.8 2.7E+02 0.0058 22.9 6.4 50 277-329 25-78 (98)
58 PRK09534 btuF corrinoid ABC tr 24.2 1.9E+02 0.0042 30.0 6.6 51 279-329 112-169 (359)
59 TIGR00129 fdhD_narQ formate de 24.1 1.1E+02 0.0025 29.7 4.5 43 277-319 183-225 (237)
60 COG3962 Acetolactate synthase 22.7 72 0.0016 34.1 2.9 40 388-428 216-255 (617)
61 PF07278 DUF1441: Protein of u 22.5 5.1E+02 0.011 23.4 7.9 67 378-460 60-126 (152)
62 PRK00724 formate dehydrogenase 21.9 1.3E+02 0.0028 29.9 4.5 42 277-318 212-253 (263)
63 PRK13602 putative ribosomal pr 21.7 2.9E+02 0.0063 21.9 5.7 51 277-330 18-72 (82)
64 TIGR03151 enACPred_II putative 20.8 3.6E+02 0.0078 27.4 7.6 54 277-330 78-131 (307)
65 cd04743 NPD_PKS 2-Nitropropane 20.7 3.2E+02 0.007 28.0 7.1 53 277-330 73-125 (320)
No 1
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2e-106 Score=876.96 Aligned_cols=521 Identities=71% Similarity=1.108 Sum_probs=497.9
Q ss_pred cccccccccccchHHHHHHHHHHHHHHHHhhhcCCcccccceeecCCCCEEEeccHHHHhhhccccChHHHHHHHHHHhh
Q 036490 6 LVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQ 85 (557)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iT~DG~tIl~~l~~~hP~a~ll~~~~~~~ 85 (557)
.+++++....+|++++..|+.||..+++++++||||+||+|||+++.|+++|||||+|||++|+++||+++|++++|++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~ni~a~~~l~~~v~ttlGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~a~~q 82 (525)
T TIGR02344 3 LVLNQNTKRESGRKAQLSNIQAAKAVADIIRTTLGPRAMLKMLLDPMGGIVMTNDGNAILREIDVAHPAAKSMIELSRTQ 82 (525)
T ss_pred eeccCCCccccHHHHHHHHHHHHHHHHHHHhcccCCCCCCceEEcCCCCEEEEccHHHHHHhccCCCHHHHHHHHHHHhh
Confidence 35677778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhccccCCCCcHHHHHHHHHHhhhccccch
Q 036490 86 DEEVGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAMPIDANDRATVLGLVKSCIGTKFTSQ 165 (557)
Q Consensus 86 ~~~~GDGttt~viL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~i~~~~~~~l~~va~t~l~sk~~~~ 165 (557)
++++||||||+|+|+++||+++.+|+++|+||..|++||+.|++.++++|++++++++..+.+.|.++++|+++||+.++
T Consensus 83 ~~~~GDGTtt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~ 162 (525)
T TIGR02344 83 DEEVGDGTTSVIILAGEMLSVAEPFLEQNIHPTIIIRAYKKALDDALSVLEEISIPVDVNDDAAMLKLIQSCIGTKFVSR 162 (525)
T ss_pred hhhccCCcchhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHhhccccchh
Confidence 99999999999999999999999999999999999999999999999999999999987778889999999999999999
Q ss_pred hHHHHHHHHHHHHhhcccccCCCccccCcccceEEEEecCCCCCCcEEEEeEEEeccccCCCCCcccccCceEEEEeccc
Q 036490 166 FGDLLADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPL 245 (557)
Q Consensus 166 ~~~~ls~lv~~a~~~v~~~~~~g~~~~d~~~~I~I~~i~G~~~~~S~li~Givl~~~~~~~~~~~~~~~n~~Ill~~~~L 245 (557)
|.+.|++++++|+..++++..++...+|++++|+|++++|++++||++++|++|++++.++ .|+++++||+|++++++|
T Consensus 163 ~~~~ls~l~~~Ai~~v~~~~~~~~~~~d~~~~I~i~ki~Gg~~~dS~lv~Gvvi~k~~~~~-~m~~~~~n~kIlll~~~L 241 (525)
T TIGR02344 163 WSDLMCDLALDAVRTVKRDLGNGRKEIDIKRYAKVEKIPGGDIEDSCVLKGVMINKDVTHP-KMRRYIENPRIVLLDCPL 241 (525)
T ss_pred HHHHHHHHHHHHHHHhhccccCCCCccChhhceEEEEecCCChHhcCcccceEEecccCCC-CCccccCCCCEEEEeccc
Confidence 9999999999999999763212234678776799999999999999999999999999998 999999999999999999
Q ss_pred ccccccccceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCCeeEecCChhHHHHHHH
Q 036490 246 EYKKGENQTNAELVKEEDWGVMLKIEEDYIENLCMQIVKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAK 325 (557)
Q Consensus 246 e~~k~~~~~~~~i~~~~~l~~~~~~E~~~i~~~v~~i~~~~~~lIi~~~~i~~~al~~L~~~~I~~v~~v~~~~le~Ia~ 325 (557)
++.+++.++++.+.+.+++++++++|++++++++++|.+.+++||+++++|++.++++|.++||++++++++++|+||++
T Consensus 242 e~~~~~~~~~i~i~~~~~~~~~l~~E~~~l~~~v~~i~~~~~~vIi~~k~I~dla~~~l~~~~I~av~~v~~~~LerIa~ 321 (525)
T TIGR02344 242 EYKKGESQTNVEIMKEEDWNRILQMEEEYVQLMCEDIIAVKPDLVITEKGVSDLAQHYLLKANISAIRRVRKTDNNRIAR 321 (525)
T ss_pred ccccccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCCceEEecCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCccccCCCCCCCCCcCCccceEEEEEECceEEEEEEecCCCCeEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHhCC
Q 036490 326 ACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNP 405 (557)
Q Consensus 326 ~tGa~iis~~~~l~~~~lG~~~~~v~~~~ig~~~~~~l~~~~~~~~~TIll~G~t~~~l~e~~~~l~dal~~~~~~l~~g 405 (557)
+|||++++++++++++.+|+.|+.|+++++|+++|++|++|.++.+|||+|||+|+.+++|+||+++||+++++++++++
T Consensus 322 ~tGa~ii~~l~~l~~~~lG~~~~~v~~~~ig~~~~~~~~g~~~~~~~TIlLrG~t~~~l~E~er~l~DAl~~vk~~~~~~ 401 (525)
T TIGR02344 322 ACGATIVNRPEELRESDVGTGCGLFEVKKIGDEYFTFFTECKDPKACTILLRGASKDVLNEIERNLQDAMAVARNVLLEP 401 (525)
T ss_pred HhCCeEecchhhCCHhhcCCcCCEEEEEEECCeEEEEEEcCCCCCEEEEEEEcCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999996599999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCchHHHHHHHHHHhhccCCCchhHHHHHHHHHhhhhHHHHHHhcCCCHHHHHHHHHHHhhCCCCceEEEeCCCC
Q 036490 406 KLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTG 485 (557)
Q Consensus 406 ~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~~~~~~~~~~Gid~~~g 485 (557)
++|||||++|++|+.+|+++++..++++|+++++|++||+.||++|++|||+|+.+++.+|+..|..+++.++|+|+.+|
T Consensus 402 ~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g 481 (525)
T TIGR02344 402 KLLPGGGATEMAVSVYLAKKASKLEGVQQWPYRAVADALEIIPRTLAQNCGVNVIRTLTELRAKHAQEGNCTWGIDGETG 481 (525)
T ss_pred CcccCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCCeEeEECCCC
Confidence 99999999999999999998888899999999999999999999999999999999999999999876346899999999
Q ss_pred cccccccCccccchHHHHHHHHHHHHHHHHHHhhhhhhcCCc
Q 036490 486 AISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIK 527 (557)
Q Consensus 486 ~i~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~id~ii~~~~ 527 (557)
++.||++.|||||+.||+++|+.|+|+|++|||||++|...|
T Consensus 482 ~~~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~ 523 (525)
T TIGR02344 482 KIVDMKEKGIWEPLAVKLQTYKTAIESACMLLRIDDIVSGVK 523 (525)
T ss_pred ccccchhccceecHHHHHHHHHHHHHHHHHHHhhhHHhhcCC
Confidence 999999999999999999999999999999999999997755
No 2
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=100.00 E-value=5.9e-106 Score=872.20 Aligned_cols=515 Identities=41% Similarity=0.680 Sum_probs=494.1
Q ss_pred cccccccccccchHHHHHHHHHHHHHHHHhhhcCCcccccceeecCCCCEEEeccHHHHhhhccccChHHHHHHHHHHhh
Q 036490 6 LVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQ 85 (557)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iT~DG~tIl~~l~~~hP~a~ll~~~~~~~ 85 (557)
.+++++.+..+|.+++..|+.||..+++++++||||+||+|||+++.|+++|||||+|||++|+++||+++|+++++++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~ni~~~~~i~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~q 82 (519)
T TIGR02339 3 FILKEGTQRTKGRDAQRNNIAAAKAVAEAVKSTLGPRGMDKMLVDSLGDVTITNDGATILKEMDIEHPAAKMLVEVAKTQ 82 (519)
T ss_pred ccccCCcccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeeeECCCCCEEEEccHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 35678888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhccccCCCCcHHHHHHHHHHhhhcccc-c
Q 036490 86 DEEVGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAMPIDANDRATVLGLVKSCIGTKFT-S 164 (557)
Q Consensus 86 ~~~~GDGttt~viL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~i~~~~~~~l~~va~t~l~sk~~-~ 164 (557)
++++||||||+++|+++||+++.+++++|+||..|++||+.|++.++++|++++++++..+++.|.++|+|+++||+. +
T Consensus 83 d~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~v~~~~~~~L~~ia~tsl~sk~~~~ 162 (519)
T TIGR02339 83 DAEVGDGTTTAVVLAGELLEKAEDLLEQGIHPTVIIEGYRKAAEKALEIIDEIATKISPEDRDLLKKVAETSLTGKASAE 162 (519)
T ss_pred HHHhCCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCcccHHHHHHHHHhhhccccccc
Confidence 999999999999999999999999999999999999999999999999999999999866688999999999999998 7
Q ss_pred hhHHHHHHHHHHHHhhcccccCCCccccCcccceEEEEecCCCCCCcEEEEeEEEeccccCCCCCcccccCceEEEEecc
Q 036490 165 QFGDLLADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSP 244 (557)
Q Consensus 165 ~~~~~ls~lv~~a~~~v~~~~~~g~~~~d~~~~I~I~~i~G~~~~~S~li~Givl~~~~~~~~~~~~~~~n~~Ill~~~~ 244 (557)
.+.++|++++++|+.+++...++|...+|++ +|+|++++|++.++|++++|++|++++.++ .|++.++||||++++++
T Consensus 163 ~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~~-~I~i~k~~Ggs~~ds~lv~G~vi~~~~~~~-~m~~~i~n~kIlll~~~ 240 (519)
T TIGR02339 163 VTKDKLANLVVEAVKQVAEKRGDGKYYVDLD-NIKIEKKTGGSIDDTELVEGIVVDKEPVHP-GMPKRVKNAKIALLDAP 240 (519)
T ss_pred hhHHHHHHHHHHHHHHHhhhccCCCcccCHH-HeEEEEccCcChhcceeEeeEEEecCCCCC-CCccccCCCcEEEEecc
Confidence 8999999999999999974222454457776 699999999999999999999999999998 89999999999999999
Q ss_pred cccccccccceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCCeeEecCChhHHHHHH
Q 036490 245 LEYKKGENQTNAELVKEEDWGVMLKIEEDYIENLCMQIVKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIA 324 (557)
Q Consensus 245 Le~~k~~~~~~~~i~~~~~l~~~~~~E~~~i~~~v~~i~~~~~~lIi~~~~i~~~al~~L~~~~I~~v~~v~~~~le~Ia 324 (557)
|++++++.+.++.+++.+++.+++++|++++++++++|.+.|++||+++++|++.++++|.++||++++++++++|+||+
T Consensus 241 Le~~~~~~~~~~~i~~~~~~~~~l~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~gI~~v~~v~~~~L~rIa 320 (519)
T TIGR02339 241 LEVEKTEIDAKIRITDPDQIKKFLDQEEAMLKEMVDKIADAGANVVFCQKGIDDLAQHYLAKAGILAVRRVKKSDIEKLA 320 (519)
T ss_pred ccccccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEECCCccHHHHHHHHHCCCEEEecCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCccccCCCCCCCCCcCCccceEEEEEECceEEEEEEecCCCCeEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHhC
Q 036490 325 KACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKN 404 (557)
Q Consensus 325 ~~tGa~iis~~~~l~~~~lG~~~~~v~~~~ig~~~~~~l~~~~~~~~~TIll~G~t~~~l~e~~~~l~dal~~~~~~l~~ 404 (557)
++|||++++++++++++.+|+ |+.|+++++|+++|++|++|..+..|||+|||+|+.+++|.+|+++||++++++++++
T Consensus 321 ~~tGa~ii~~~~~l~~~~LG~-~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~ 399 (519)
T TIGR02339 321 RATGAKIVSSIKEITESDLGY-AGLVEERKVGDDKMTFVEGCKNPKAVTILLRGGTEHVVDELERSIQDALHVVASALED 399 (519)
T ss_pred HHhCCEEeCchhhCChhhccC-CceEEEEEECCeEEEEEEcCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999 9999999999999999999998999999999999999999999999999999999999
Q ss_pred CccccCCCchHHHHHHHHHHhhccCCCchhHHHHHHHHHhhhhHHHHHHhcCCCHHHHHHHHHHHhhCCCCceEEEeCCC
Q 036490 405 PKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNT 484 (557)
Q Consensus 405 g~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~~~~~~~~~~Gid~~~ 484 (557)
|++|||||++|++|+.+|++++...++++++++++|++||+.||++|++|||+|+.+++.+|+..|..++ .++|+|+.+
T Consensus 400 ~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~~-~~~Gid~~~ 478 (519)
T TIGR02339 400 GKVVAGGGAVEIELALRLRSYARKIGGREQLAIEAFADALEEIPRILAENAGLDPIDALVELRAKHEKGN-KNAGINVFT 478 (519)
T ss_pred CCEeeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccC-CceeEEcCC
Confidence 9999999999999999999988888899999999999999999999999999999999999999987664 689999999
Q ss_pred CcccccccCccccchHHHHHHHHHHHHHHHHHHhhhhhhc
Q 036490 485 GAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVS 524 (557)
Q Consensus 485 g~i~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~id~ii~ 524 (557)
|++.||++.|||||+.||+++|+.|+|+|++||+||++|.
T Consensus 479 g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~ 518 (519)
T TIGR02339 479 GEIEDMLELGVIEPLRVKEQAIKSATEAATMILRIDDVIA 518 (519)
T ss_pred CCccchhhccceEcHHHHHHHHHHHHHHHHHHHhHhHHhh
Confidence 9999999999999999999999999999999999999985
No 3
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-107 Score=786.69 Aligned_cols=521 Identities=35% Similarity=0.616 Sum_probs=501.0
Q ss_pred CCCCccccccccccccchHHHHHHHHHHHHHHHHhhhcCCcccccceeecCCCCEEEeccHHHHhhhccccChHHHHHHH
Q 036490 1 MHSPVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIE 80 (557)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iT~DG~tIl~~l~~~hP~a~ll~~ 80 (557)
|++|+.+++++++.++|..+..+|+.||..+++.+++||||+|++|+|++..|+++|||||+||||.|++-||+|+.|++
T Consensus 2 m~~~ii~lkegtd~sqGk~QlvSNInaC~~v~e~~rtTLGP~GmDkLivd~~g~~tIsNDGATIlKlldivhPaaktlVd 81 (543)
T KOG0361|consen 2 MQPPIILLKEGTDPSQGKGQLVSNINACTAVAEALRTTLGPRGMDKLIVDSKGKTTISNDGATILKLLDIVHPAAKTLVD 81 (543)
T ss_pred CCCCEEEeecccCcccCchhhhhchHHHHHHHHHHHhccCccccceeeecCCCcEEEecCcHHHHHHHhhcChhHHHHHH
Confidence 67888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhccccCCCCc----HHHHHHHHHH
Q 036490 81 LSRTQDEEVGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAMPIDAND----RATVLGLVKS 156 (557)
Q Consensus 81 ~~~~~~~~~GDGttt~viL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~i~~~~----~~~l~~va~t 156 (557)
++++||.++||||||+|+|++++|+++-.+++.|+||..|+++|++|...+++.++++++.++..+ ++.|++.|.|
T Consensus 82 ia~sQDaEVGDGTTSVv~la~E~lk~~Kpfiedgv~~~~iir~~rka~~l~v~ki~elav~i~~~~~~~~r~lL~KcA~T 161 (543)
T KOG0361|consen 82 IARSQDAEVGDGTTSVVLLAAEFLKEAKPFIEDGVHPQLIIRAYRKARQLAVEKIKELAVEIDGSSKTELRELLEKCAAT 161 (543)
T ss_pred HHhhccccccCCceeEeeeHHHHHHhhhhHhhcCCCHHHHHHHHHHHHHHHHHHHHHheeEecccchhhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999887433 6679999999
Q ss_pred hhhccccchhHHHHHHHHHHHHhhcccccCCCccccCcccceEEEEecCCCCCCcEEEEeEEEeccccCC--CCCccccc
Q 036490 157 CIGTKFTSQFGDLLADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAP--GKMRRKIV 234 (557)
Q Consensus 157 ~l~sk~~~~~~~~ls~lv~~a~~~v~~~~~~g~~~~d~~~~I~I~~i~G~~~~~S~li~Givl~~~~~~~--~~~~~~~~ 234 (557)
+++||+..+..++|+++++||+..+.. ..|. ++|-|+|++||.++||.+++|+-|.+.|++. ++.|+++.
T Consensus 162 ~lsSKlI~~ek~fF~~MvVDAV~~ld~-------~l~~-~mIGIKKV~GG~~~dS~lv~GVAFkKtFsYAGfEqqPKk~~ 233 (543)
T KOG0361|consen 162 ALSSKLIRQEKEFFAKMVVDAVLTLDN-------DLDL-NMIGIKKVPGGAMEDSLLVNGVAFKKTFSYAGFEQQPKKFL 233 (543)
T ss_pred HhhhhhhhhhHHHHHHHHHHHHHhhcc-------ccch-hhcceeecCCCccchhhhccceeeeehccccchhhCccccC
Confidence 999999999999999999999998862 1333 3799999999999999999999999998875 37899999
Q ss_pred CceEEEEecccccccccccceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCCeeEec
Q 036490 235 NPRIILLDSPLEYKKGENQTNAELVKEEDWGVMLKIEEDYIENLCMQIVKFKPDLVITEKGLSDLACHYLSKAGVSAIRR 314 (557)
Q Consensus 235 n~~Ill~~~~Le~~k~~~~~~~~i~~~~~l~~~~~~E~~~i~~~v~~i~~~~~~lIi~~~~i~~~al~~L~~~~I~~v~~ 314 (557)
||||+++|..||.+..+.+.++.+.++++++.+...||+++.+++++|...|+|||++.-.|.+.+.+||++++|.|.+|
T Consensus 234 NpkIl~LnvELElKaEkdNAEiRv~~v~eyQ~iVDAEW~Ii~~KL~ki~~sGAnVVLSkLpIGD~ATQyFAdrdiFCAGR 313 (543)
T KOG0361|consen 234 NPKILLLNVELELKAEKDNAEIRVDNVEEYQAIVDAEWNIIYDKLDKIHESGANVVLSKLPIGDLATQYFADRDIFCAGR 313 (543)
T ss_pred CceEEEEeeeeeecccccCceeecCCHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEecccchHHHHHHhhccCceecCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHhCCccccCCCCCCCCCcCCccceEEEEEECceEEEEEEecCCCCeEEEEEccCCHHHHHHHHHHHHHH
Q 036490 315 LRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDA 394 (557)
Q Consensus 315 v~~~~le~Ia~~tGa~iis~~~~l~~~~lG~~~~~v~~~~ig~~~~~~l~~~~~~~~~TIll~G~t~~~l~e~~~~l~da 394 (557)
++.++|.|+..++|++|.++..++.+..||. |..|+++++|.+||-+|+||+..+.||++|||+.++.++|.+|++|||
T Consensus 314 V~~eDl~Rv~~acGGsi~tt~~~i~~~~LG~-C~~FeE~QvG~eRyN~Fegcp~aktcTliLRGgaeqfieE~eRSlHDA 392 (543)
T KOG0361|consen 314 VPEEDLNRVMQACGGSIQTTVSDIKEEVLGT-CALFEERQVGGERYNLFEGCPKAKTCTLILRGGAEQFIEETERSLHDA 392 (543)
T ss_pred CCHHHHHHHHHhcCcchhhhhhhcchhhcch-hhhHHHHhhcchhhhhhcCCCccceeEEEEeccHHHHHHHHhhhhhhH
Confidence 9999999999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCccccCCCchHHHHHHHHHHhhccCCCchhHHHHHHHHHhhhhHHHHHHhcCCCHHHHHHHHHHHhhCCC
Q 036490 395 MSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGE 474 (557)
Q Consensus 395 l~~~~~~l~~g~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~~~~~~ 474 (557)
++++|.++++..||+|||++||.++++|++++..+.+++|+.+.+|++|||.||++||.|+|+|...++++||..|..|.
T Consensus 393 ImIVrralkn~~vVaGGGaiEMElSk~lRd~S~ti~gK~q~~i~A~akalEvIPrqLc~NaGfDa~~ilnkLR~rHA~G~ 472 (543)
T KOG0361|consen 393 IMIVRRALKNDSVVAGGGAIEMELSKYLRDYSRTIAGKQQLFINAYAKALEVIPRQLCDNAGFDATNILNKLRQRHAQGE 472 (543)
T ss_pred HHHHHHHhccCcEeeCCceeeehHHHHHHHhhcccCcHHHHHHHHHHHHHHHhHHHHhhhcCCcHHHHHHHHHHHhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CceEEEeCCCCcccccccCccccchHHHHHHHHHHHHHHHHHHhhhhhhcCCccCCC
Q 036490 475 NAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQA 531 (557)
Q Consensus 475 ~~~~Gid~~~g~i~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~id~ii~~~~~~~~ 531 (557)
.|+|+|..++.+.|+++.+||||..||++++..|+|+||++|.+|+.|...++.++
T Consensus 473 -~w~Gvdi~~e~i~dn~~~~VwEP~~VK~Nai~aateAa~lIlsvDeTikn~~S~~~ 528 (543)
T KOG0361|consen 473 -KWYGVDINTEGIADNFEKFVWEPSIVKINAITAATEAACLILSVDETIKNPKSQSA 528 (543)
T ss_pred -ceeeeeecccchhhHHHhhccChHHHHHHHHHHHHHhhhheEehhhhhcCCcccCC
Confidence 99999999999999999999999999999999999999999999999987664443
No 4
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.1e-104 Score=859.20 Aligned_cols=515 Identities=29% Similarity=0.548 Sum_probs=490.8
Q ss_pred cccccccccccchHHHHHHHHHHHHHHHHhhhcCCcccccceeecCCCCEEEeccHHHHhhhccccChHHHHHHHHHHhh
Q 036490 6 LVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQ 85 (557)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iT~DG~tIl~~l~~~hP~a~ll~~~~~~~ 85 (557)
.+++++....+|.+++..|+.||..+++++++||||+||+|||+++.|+++|||||+||+++|+++||+++|++++|++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~ni~a~~~l~~~vkttlGP~G~~Kmi~~~~G~~~ITnDG~TIlk~i~i~hP~a~ll~~~a~~q 82 (531)
T TIGR02347 3 KLLNPKAESLRRDAALMMNINAARGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLNEMQIQHPTASMIARAATAQ 82 (531)
T ss_pred ccccCCcccccHHHHHHHHHHHHHHHHHHHhcCCCCCccceEEEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHHh
Confidence 35577778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhccccCC-CCcHHHHHHHHHHhhhccccc
Q 036490 86 DEEVGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAMPID-ANDRATVLGLVKSCIGTKFTS 164 (557)
Q Consensus 86 ~~~~GDGttt~viL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~i~-~~~~~~l~~va~t~l~sk~~~ 164 (557)
++++||||||+++|+++||+++.+|+++|+||..|++||+.|++.++++|+++++++. ..+.+.|.++++|+++||+.+
T Consensus 83 d~~~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~ia~tsl~sK~~~ 162 (531)
T TIGR02347 83 DDITGDGTTSTVILIGELLKQAERYILEGIHPRILTEGFEIARGELLEFLDKFKIKTEDEVDRELLLNVARTSLRTKLPI 162 (531)
T ss_pred hhhhcCcHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhccccch
Confidence 9999999999999999999999999999999999999999999999999999997763 457889999999999999999
Q ss_pred hhHHHHHHHHHHHHhhcccccCCCccccCcccceEEEEecCCCCCCcEEEEeEEEeccccCCCCCcccccCceEEEEecc
Q 036490 165 QFGDLLADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSP 244 (557)
Q Consensus 165 ~~~~~ls~lv~~a~~~v~~~~~~g~~~~d~~~~I~I~~i~G~~~~~S~li~Givl~~~~~~~~~~~~~~~n~~Ill~~~~ 244 (557)
+++++|++++++|+..+++ ++. .+|++ +|++.+..|++.++|++++|++|++++.++ .|+++++||+|++++++
T Consensus 163 ~~~~~ls~iv~~Av~~v~~---~~~-~i~~~-~I~i~k~~g~s~~ds~~v~Giv~~~~~~~~-~~~~~~~n~~Ill~~~~ 236 (531)
T TIGR02347 163 DLADQLTEIVVDAVLAIKK---DGE-QIDLF-MVEIMEMKHKSATDTTLIRGLVLDHGARHP-DMPRRVKNAYILTCNVS 236 (531)
T ss_pred hhHHHHHHHHHHHHHHHhh---cCC-CCChh-HeEEEEecCCCccccEEEeeEEEecCcCCC-CCceeccCceEEEEeCC
Confidence 9999999999999999975 232 46665 599999999999999999999999999999 89999999999999999
Q ss_pred cccccccccceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcC-------Cc---EEEeCCCCCHHHHHHHHHcCCeeEec
Q 036490 245 LEYKKGENQTNAELVKEEDWGVMLKIEEDYIENLCMQIVKFK-------PD---LVITEKGLSDLACHYLSKAGVSAIRR 314 (557)
Q Consensus 245 Le~~k~~~~~~~~i~~~~~l~~~~~~E~~~i~~~v~~i~~~~-------~~---lIi~~~~i~~~al~~L~~~~I~~v~~ 314 (557)
|++.+++....+.+++.+++..++..|++++++++++|.+.+ ++ ||+++++|++.+++||.++||+++++
T Consensus 237 le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~I~~~~~~~~~~~~~~~~lvi~~k~I~~~a~~~L~~~~I~~i~r 316 (531)
T TIGR02347 237 LEYEKTEVNSGFFYSNAEQREKLVEAERKFVDDRVKKIIELKKKVCGKSPDKGFVVINQKGIDPPSLDLLAKEGIMALRR 316 (531)
T ss_pred CCCCccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccEEEEeCCCccHHHHHHHHHCCceEEcc
Confidence 999999999999999999999999999999999999999866 25 99999999999999999999999999
Q ss_pred CChhHHHHHHHHhCCccccCCCCCCCCCcCCccceEEEEEECceEEEEEEecCCCCeEEEEEccCCHHHHHHHHHHHHHH
Q 036490 315 LRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDA 394 (557)
Q Consensus 315 v~~~~le~Ia~~tGa~iis~~~~l~~~~lG~~~~~v~~~~ig~~~~~~l~~~~~~~~~TIll~G~t~~~l~e~~~~l~da 394 (557)
+++++|+||+++|||++++++++++++++|+ |+.|+++.+|+++|++|++|.+++.|||+|||+|+.+++|++|+++||
T Consensus 317 v~~~~le~ia~~tGa~~i~~l~~~~~~~LG~-~~~v~~~~ig~~~~~~i~~~~~~~~~TI~lrG~t~~~l~E~er~l~DA 395 (531)
T TIGR02347 317 AKRRNMERLTLACGGEALNSVEDLTPECLGW-AGLVYETSIGEEKYTFIEEVKNPKSCTILIKGPNDHTIKQIKDAVRDG 395 (531)
T ss_pred CCHHHHHHHHHHhCCEEecccccCCcccccc-ceEEEEEEECCeEEEEEEcCCCCCeEEEEEeCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCccccCCCchHHHHHHHHHHhhccCCCchhHHHHHHHHHhhhhHHHHHHhcCCCHHHHHHHHHHHhhCCC
Q 036490 395 MSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGE 474 (557)
Q Consensus 395 l~~~~~~l~~g~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~~~~~~ 474 (557)
++++++++++|++|||||++|++|+.+|++++...++++|+++++|++||+.||++|++|||+|+.+++.+|++.|..+.
T Consensus 396 l~v~~~~~~~~~vvpGGGa~E~~ls~~l~~~~~~~~~~~~~~i~~fa~ALe~ip~~La~NaG~d~~~vl~~l~~~~~~~~ 475 (531)
T TIGR02347 396 LRAVKNAIEDKCVVPGAGAFEIAAYCHLKEEKKSVKGKAKLGVEAFANALLVIPKTLAENSGLDAQDTLVKLEDEHDEGG 475 (531)
T ss_pred HHHHHHHhhCCcEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccC
Confidence 99999999999999999999999999999998888899999999999999999999999999999999999999997764
Q ss_pred CceEEEeCCCCcccccccCccccchHHHHHHHHHHHHHHHHHHhhhhhhcCCcc
Q 036490 475 NAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKK 528 (557)
Q Consensus 475 ~~~~Gid~~~g~i~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~id~ii~~~~~ 528 (557)
.++|+|+.+|++.||++.|||||+.+|+++|+.|+|+|++|||||++|...|+
T Consensus 476 -~~~Gid~~~g~~~d~~~~gV~Dp~~vk~~al~~A~e~a~~iLrID~ii~~~~~ 528 (531)
T TIGR02347 476 -EVVGVDLETGEPIDPEIKGIWDNYRVKKQLIQSATVIASQLLLVDEVMRAGRS 528 (531)
T ss_pred -CceeeeccCCCccchhhccCEEcHHHHHHHHHHHHHHHHHHHhHHHHHhCccc
Confidence 67999999999999999999999999999999999999999999999987554
No 5
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1e-104 Score=863.27 Aligned_cols=510 Identities=32% Similarity=0.505 Sum_probs=484.7
Q ss_pred cccchHHHHHHHHHHHHHHHHhhhcCCcccccceeecCCCCEEEeccHHHHhhhccccChHHHHHHHHHHhhhhhcCCCh
Q 036490 14 RESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGT 93 (557)
Q Consensus 14 ~~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iT~DG~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGt 93 (557)
.++|++++..|++||..+++++++||||+||+|||+++.|+++|||||+||+++|+++||+++|++++|++|++++||||
T Consensus 3 ~~~~~~~~~~ni~a~~~l~~~v~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hP~akll~~~a~~q~~~~GDGT 82 (527)
T cd03335 3 RTSGQDVRTQNVTAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKILVELAQLQDKEVGDGT 82 (527)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhcCcCCCcCceEEEcCCCCEEEeCcHHHHHHhccccChHHHHHHHHHHHHHHHhCCCc
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhh-ccccCCCCcHHHHHHHHHHhhhccccchhHHHHHH
Q 036490 94 TSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDT-IAMPIDANDRATVLGLVKSCIGTKFTSQFGDLLAD 172 (557)
Q Consensus 94 tt~viL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~-~s~~i~~~~~~~l~~va~t~l~sk~~~~~~~~ls~ 172 (557)
||+++|+++||+++.+|+++|+||..|++||+.|++.++++|++ +++|++..+++.|.++++|+++||+.+.+.+.+++
T Consensus 83 Tt~vvLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~ls~ 162 (527)
T cd03335 83 TSVVIIAAELLKRANELVKQKIHPTTIISGYRLACKEAVKYIKEHLSISVDNLGKESLINVAKTSMSSKIIGADSDFFAN 162 (527)
T ss_pred chHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcccccchhHHHHHH
Confidence 99999999999999999999999999999999999999999996 89998766788999999999999999888899999
Q ss_pred HHHHHHhhcccccCCCccccCcccceEEEEecCCCCCCcEEEEeEEEeccccCCCCCcccccCceEEEEecccccccccc
Q 036490 173 LAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGEN 252 (557)
Q Consensus 173 lv~~a~~~v~~~~~~g~~~~d~~~~I~I~~i~G~~~~~S~li~Givl~~~~~~~~~~~~~~~n~~Ill~~~~Le~~k~~~ 252 (557)
++++|+..++....+|...+|++ +|+|+++.|++.++|++++|++|++++.++ +|++.++||+|++++++|++.+++.
T Consensus 163 l~~~A~~~v~~~~~~~~~~~~~~-~I~i~~~~Ggs~~~s~li~Givi~~~~~~~-~m~~~i~n~kIlll~~~Le~~~~~~ 240 (527)
T cd03335 163 MVVDAILAVKTTNEKGKTKYPIK-AVNILKAHGKSAKESYLVNGYALNCTRASQ-GMPTRVKNAKIACLDFNLQKTKMKL 240 (527)
T ss_pred HHHHHHHHhhcccccCCCccCHH-HeEEEEecCcChhhcceeeeEEEecccCCC-CCcccccCCcEEEEeccCCCCcccc
Confidence 99999999863212343357776 699999999999999999999999999998 8999999999999999999999999
Q ss_pred cceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCCeeEecCChhHHHHHHHHhCCccc
Q 036490 253 QTNAELVKEEDWGVMLKIEEDYIENLCMQIVKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIV 332 (557)
Q Consensus 253 ~~~~~i~~~~~l~~~~~~E~~~i~~~v~~i~~~~~~lIi~~~~i~~~al~~L~~~~I~~v~~v~~~~le~Ia~~tGa~ii 332 (557)
+.++.+++.++++.+.+.|++++++++++|.+.|++||+++++|++.+++||.++||++++++++++|+|||++|||+++
T Consensus 241 ~~~~~~~~~~~le~~~~~E~~~l~~~i~~i~~~g~~lvi~~k~I~d~al~~L~~~~I~~v~~v~~~~lerIa~~tGa~ii 320 (527)
T cd03335 241 GVQVVVTDPEKLEKIRQRESDITKERIKKILAAGANVVLTTGGIDDMCLKYFVEAGAMAVRRVKKEDLRRIAKATGATLV 320 (527)
T ss_pred ceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCCcEEEEeCCHHHHHHHHHHhCCEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCC------CCCCcCCccceEEEEEECceEEEEEEecCCCCeEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHhCCc
Q 036490 333 NRPDEL------QESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPK 406 (557)
Q Consensus 333 s~~~~l------~~~~lG~~~~~v~~~~ig~~~~~~l~~~~~~~~~TIll~G~t~~~l~e~~~~l~dal~~~~~~l~~g~ 406 (557)
++++++ +++++|+ |+.|+++++|+++|++|++|.++++|||+|||+|+.+++|++|+++||++++++++++|+
T Consensus 321 ~~~~~l~~~~~~~~~~LG~-~~~v~~~~ig~~~~~~i~g~~~~~~~TIllrG~t~~~l~e~er~i~Dal~~~~~~~~~~~ 399 (527)
T cd03335 321 STLANLEGEETFDPSYLGE-AEEVVQERIGDDELILIKGTKKRSSASIILRGANDFMLDEMERSLHDALCVVKRTLESNS 399 (527)
T ss_pred cChhhcCcccccCHhhCcc-CceEEEEEECCeEEEEEEcCCCCCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 988665 3347999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCchHHHHHHHHHHhhccCCCchhHHHHHHHHHhhhhHHHHHHhcCCCHHHHHHHHHHHhhCCC-------CceEE
Q 036490 407 LVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGE-------NAWIG 479 (557)
Q Consensus 407 vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~~~~~~-------~~~~G 479 (557)
+|||||++|++|+.+|+++++..++++++++++|++||+.||++|++|||+|+.+++.+|++.|..+. ++++|
T Consensus 400 vvpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~~~~~l~~~h~~~~~~~~~~~~~~~G 479 (527)
T cd03335 400 VVPGGGAVETALSIYLENFATTLGSREQLAIAEFAEALLVIPKTLAVNAAKDATELVAKLRAYHAAAQVKPDKKHLKWYG 479 (527)
T ss_pred EeeCCCHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCccccccCceEe
Confidence 99999999999999999998888899999999999999999999999999999999999999997652 36899
Q ss_pred EeCCCCcccccccCccccchHHHHHHHHHHHHHHHHHHhhhhhhcCC
Q 036490 480 IDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGI 526 (557)
Q Consensus 480 id~~~g~i~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~id~ii~~~ 526 (557)
+|+.+|++.||++.|||||+.+|.++|+.|+|+|++|||||++|...
T Consensus 480 id~~~g~~~d~~~~gV~dp~~~k~~~i~~A~e~a~~iLrID~ii~~~ 526 (527)
T cd03335 480 LDLINGKVRDNLEAGVLEPTVSKIKSLKFATEAAITILRIDDLIKLN 526 (527)
T ss_pred EECCCCcccchhhccceecHHHHHHHHHHHHHHHHHHHhhcceeecC
Confidence 99999999999999999999999999999999999999999999764
No 6
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=1.9e-104 Score=861.40 Aligned_cols=514 Identities=42% Similarity=0.698 Sum_probs=493.1
Q ss_pred ccccccccccchHHHHHHHHHHHHHHHHhhhcCCcccccceeecCCCCEEEeccHHHHhhhccccChHHHHHHHHHHhhh
Q 036490 7 VLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQD 86 (557)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iT~DG~tIl~~l~~~hP~a~ll~~~~~~~~ 86 (557)
+++++....+|.+++..|+.||..+++++++||||+||+|||+++.|+++|||||+||+++|+++||+++|++++|++|+
T Consensus 3 ~~~~~~~~~~~~~~~~~n~~~~~~i~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~q~ 82 (517)
T cd03343 3 ILKEGTQRTSGRDAQRMNIAAAKAVAEAVRTTLGPKGMDKMLVDSLGDVTITNDGATILKEMDIEHPAAKMLVEVAKTQD 82 (517)
T ss_pred ccCCCcccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCceeEcCCCCEEEEccHHHHHHHccCcCHHHHHHHHHHHHHH
Confidence 45777788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhccccCCCCcHHHHHHHHHHhhhccccchh
Q 036490 87 EEVGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAMPIDANDRATVLGLVKSCIGTKFTSQF 166 (557)
Q Consensus 87 ~~~GDGttt~viL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~i~~~~~~~l~~va~t~l~sk~~~~~ 166 (557)
+++||||||+++|+++|++++.+++++|+||..|++||+.|++.++++|++++++++..+++.+.++|+|+++||+.+.+
T Consensus 83 ~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~l~~va~ts~~sk~~~~~ 162 (517)
T cd03343 83 EEVGDGTTTAVVLAGELLEKAEDLLDQNIHPTVIIEGYRLAAEKALELLDEIAIKVDPDDKDTLRKIAKTSLTGKGAEAA 162 (517)
T ss_pred HHhCCChhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHhhcccchhhH
Confidence 99999999999999999999999999999999999999999999999999999998766788999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccccCCCccccCcccceEEEEecCCCCCCcEEEEeEEEeccccCCCCCcccccCceEEEEecccc
Q 036490 167 GDLLADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLE 246 (557)
Q Consensus 167 ~~~ls~lv~~a~~~v~~~~~~g~~~~d~~~~I~I~~i~G~~~~~S~li~Givl~~~~~~~~~~~~~~~n~~Ill~~~~Le 246 (557)
.+.+++++++|+.+++.+. .+...+|++ +|+|.+++|+++++|++++|++|++++.++ .|++.++||||++++++||
T Consensus 163 ~~~l~~l~~~A~~~v~~~~-~~~~~~~~~-~I~i~k~~Ggs~~ds~lv~G~v~~~~~~~~-~m~~~~~n~~Illl~~~Le 239 (517)
T cd03343 163 KDKLADLVVDAVLQVAEKR-DGKYVVDLD-NIKIEKKTGGSVDDTELIRGIVIDKEVVHP-GMPKRVENAKIALLDAPLE 239 (517)
T ss_pred HHHHHHHHHHHHHHhhhcc-CCCccccHH-HeeEEeecCcCHHHcceeeeEEEeccCCCC-CCccccCCCcEEEEecccc
Confidence 9999999999999997521 122467775 699999999999999999999999999998 8999999999999999999
Q ss_pred cccccccceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCCeeEecCChhHHHHHHHH
Q 036490 247 YKKGENQTNAELVKEEDWGVMLKIEEDYIENLCMQIVKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKA 326 (557)
Q Consensus 247 ~~k~~~~~~~~i~~~~~l~~~~~~E~~~i~~~v~~i~~~~~~lIi~~~~i~~~al~~L~~~~I~~v~~v~~~~le~Ia~~ 326 (557)
+++++.++++.+++.+++.+++++|++++++++++|.+.|++||+++++|++.+++||.++||++++++++++|+||+++
T Consensus 240 ~~k~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~l~~~gI~~v~~v~~~~l~~Ia~~ 319 (517)
T cd03343 240 VKKTEIDAKIRITSPDQLQAFLEQEEAMLKEMVDKIADTGANVVFCQKGIDDLAQHYLAKAGILAVRRVKKSDMEKLARA 319 (517)
T ss_pred CCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCCcEEEEeCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCccccCCCCCCCCCcCCccceEEEEEECceEEEEEEecCCCCeEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHhCCc
Q 036490 327 CGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPK 406 (557)
Q Consensus 327 tGa~iis~~~~l~~~~lG~~~~~v~~~~ig~~~~~~l~~~~~~~~~TIll~G~t~~~l~e~~~~l~dal~~~~~~l~~g~ 406 (557)
|||++++++++++++++|+ |+.|+++++|+++|++|++|.++..|||+|||+|+.+++|.+|+++||++++++++++|+
T Consensus 320 tGa~ii~~~~~l~~~~LG~-~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t~~~l~e~~~~l~Dal~~~~~~~~~~~ 398 (517)
T cd03343 320 TGAKIVTNIDDLTPEDLGE-AELVEERKVGDDKMVFVEGCKNPKAVTILLRGGTEHVVDELERALEDALRVVADALEDGK 398 (517)
T ss_pred hCCEEecchhhCChhhCCc-cceEEEEEECCeEEEEEEcCCCCceEEEEEECCcHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCchHHHHHHHHHHhhccCCCchhHHHHHHHHHhhhhHHHHHHhcCCCHHHHHHHHHHHhhCCCCceEEEeCCCCc
Q 036490 407 LVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGA 486 (557)
Q Consensus 407 vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~~~~~~~~~~Gid~~~g~ 486 (557)
+|||||++|++++.+|++++...++++++++++|++||+.||++|++|||+|+.+++.+|++.|..++ .++|+|+.+|+
T Consensus 399 vvpGGG~~e~~ls~~L~~~~~~~~~~~~~~~~~~~~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~-~~~G~d~~~g~ 477 (517)
T cd03343 399 VVAGGGAVEIELAKRLREYARSVGGREQLAVEAFADALEEIPRTLAENAGLDPIDTLVELRAAHEKGN-KNAGLDVYTGE 477 (517)
T ss_pred eeeCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccC-CceeeecCCCC
Confidence 99999999999999999988888899999999999999999999999999999999999999887664 78999999999
Q ss_pred ccccccCccccchHHHHHHHHHHHHHHHHHHhhhhhhcC
Q 036490 487 ISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSG 525 (557)
Q Consensus 487 i~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~id~ii~~ 525 (557)
+.||++.|||||+.+|+++|+.|+|+|++||+||++|+.
T Consensus 478 ~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~ 516 (517)
T cd03343 478 VVDMLEKGVIEPLRVKKQAIKSATEAATMILRIDDVIAA 516 (517)
T ss_pred ccchhhcCceecHHHHHHHHHHHHHHHHHHHhhhHhhhC
Confidence 999999999999999999999999999999999999965
No 7
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=100.00 E-value=9.3e-104 Score=855.21 Aligned_cols=512 Identities=32% Similarity=0.519 Sum_probs=488.4
Q ss_pred CccccccccccccchHHHHHHHHHHHHHHHHhhhcCCcccccceeecC-----CCCEEEeccHHHHhhhccccChHHHHH
Q 036490 4 PVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDA-----SGGIVVTNDGNAILRELDVAHPAAKSM 78 (557)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~-----~g~~~iT~DG~tIl~~l~~~hP~a~ll 78 (557)
|..+++++....+|.+++..|+.||..+++++++||||+||+|||+++ .|+++|||||+|||++|+++||+|+|+
T Consensus 7 ~~~~~~~~~~~~~~~~a~~~ni~a~~~i~~~vkttlGP~G~~Kmi~~~~~~~~~G~~~iTnDG~TIlk~i~~~hP~akll 86 (533)
T PTZ00212 7 PPQVLKQGAQEEKGETARLQSFVGAIAVADLVKTTLGPKGMDKILQPMSEGPRSGNVTVTNDGATILKSVWLDNPAAKIL 86 (533)
T ss_pred chHHhcCCcccccHHHHHHHHHHHHHHHHHHHhCCCCCCccceEeecCCCcccCCCEEEeccHHHHHHhccCcCHHHHHH
Confidence 556778888899999999999999999999999999999999999998 599999999999999999999999999
Q ss_pred HHHHHhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhccccCCCCc---HHHHHHHHH
Q 036490 79 IELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAMPIDAND---RATVLGLVK 155 (557)
Q Consensus 79 ~~~~~~~~~~~GDGttt~viL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~i~~~~---~~~l~~va~ 155 (557)
+++|++|++++||||||+|+|+++||+++.+|+++|+||..|++||+.|++.++++|++++++++..+ .+.|.++|+
T Consensus 87 ~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~l~~va~ 166 (533)
T PTZ00212 87 VDISKTQDEEVGDGTTSVVVLAGELLREAEKLLDQKIHPQTIIEGWRMALDVARKALEEIAFDHGSDEEKFKEDLLNIAR 166 (533)
T ss_pred HHHHHhhhhhhCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCcCCCccchhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999886433 678999999
Q ss_pred HhhhccccchhHHHHHHHHHHHHhhcccccCCCccccCcccceEEEEecCCCCCCcEEEEeEEEeccccCCCCCcccccC
Q 036490 156 SCIGTKFTSQFGDLLADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVN 235 (557)
Q Consensus 156 t~l~sk~~~~~~~~ls~lv~~a~~~v~~~~~~g~~~~d~~~~I~I~~i~G~~~~~S~li~Givl~~~~~~~~~~~~~~~n 235 (557)
|+++||+.+.+.+.|++++++|+..+.. .+|++ +|++.+++|+++++|++++|+++++++.+ .|+++++|
T Consensus 167 t~l~sk~~~~~~~~l~~i~~~av~~i~~-------~~~~~-~I~i~ki~Ggsi~ds~lv~G~v~~~~~~~--~~~~~i~n 236 (533)
T PTZ00212 167 TTLSSKLLTVEKDHFAKLAVDAVLRLKG-------SGNLD-YIQIIKKPGGTLRDSYLEDGFILEKKIGV--GQPKRLEN 236 (533)
T ss_pred HHhcccccchhHHHHHHHHHHHHHHHhc-------cCCcc-ceEEEEecCcCccccEEEEeEEEecccCC--CCCccccC
Confidence 9999999999999999999999998852 24444 59999999999999999999999999876 58999999
Q ss_pred ceEEEEecccccccccc-cceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCCeeEec
Q 036490 236 PRIILLDSPLEYKKGEN-QTNAELVKEEDWGVMLKIEEDYIENLCMQIVKFKPDLVITEKGLSDLACHYLSKAGVSAIRR 314 (557)
Q Consensus 236 ~~Ill~~~~Le~~k~~~-~~~~~i~~~~~l~~~~~~E~~~i~~~v~~i~~~~~~lIi~~~~i~~~al~~L~~~~I~~v~~ 314 (557)
|||++++++||+++++. +.++.+++.+++..+.+.|+++++++++.|.+.|+++++++++|++.++++|.++||+++++
T Consensus 237 ~kIll~~~~Le~~k~~~~~~~~~i~~~~~~~~l~~~E~~~i~~~v~~Ii~~gv~vvv~~~~I~d~a~~~L~~~~I~avr~ 316 (533)
T PTZ00212 237 CKILVANTPMDTDKIKIYGAKVKVDSMEKVAEIEAAEKEKMKNKVDKILAHGCNVFINRQLIYNYPEQLFAEAGIMAIEH 316 (533)
T ss_pred CcEEEEeCCCCCCcccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCCCEEEec
Confidence 99999999999999987 78899999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHhCCccccCCCCCCCCCcCCccceEEEEEECceEEEEEEecCCCCeEEEEEccCCHHHHHHHHHHHHHH
Q 036490 315 LRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDA 394 (557)
Q Consensus 315 v~~~~le~Ia~~tGa~iis~~~~l~~~~lG~~~~~v~~~~ig~~~~~~l~~~~~~~~~TIll~G~t~~~l~e~~~~l~da 394 (557)
+++.+++||+++|||+++++++++++.++|+ |+.|++..+|+++|++|++|..+++|||+|||+|+.+++|.||+++||
T Consensus 317 v~~~~l~rIa~~tGa~iis~l~~~~~~~LG~-~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~er~i~DA 395 (533)
T PTZ00212 317 ADFDGMERLAAALGAEIVSTFDTPEKVKLGH-CDLIEEIMIGEDKLIRFSGCAKGEACTIVLRGASTHILDEAERSLHDA 395 (533)
T ss_pred CCHHHHHHHHHHhCCEEeecCCCCCHHHccC-CceEEEEEECCeEEEEEEccCCCCEEEEEEECCChhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCccccCCCchHHHHHHHHHHhhccCCCchhHHHHHHHHHhhhhHHHHHHhcCCCHHHHHHHHHHHhhCCC
Q 036490 395 MSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGE 474 (557)
Q Consensus 395 l~~~~~~l~~g~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~~~~~~ 474 (557)
++++++++++|++|||||++|++|+.+|++++++.++++++++++|++||+.||++|++|||+|+.+++.+|+..|..++
T Consensus 396 l~vv~~~i~~~~vVpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~~ 475 (533)
T PTZ00212 396 LCVLSQTVKDTRVVLGGGCSEMLMANAVEELAKKVEGKKSLAIEAFAKALRQIPTIIADNGGYDSAELVSKLRAEHYKGN 475 (533)
T ss_pred HHHHHHHhhCCCEeeCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC
Confidence 99999999999999999999999999999998888899999999999999999999999999999999999999998774
Q ss_pred CceEEEeCCCCcccccccCccccchHHHHHHHHHHHHHHHHHHhhhhhhcCCc
Q 036490 475 NAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIK 527 (557)
Q Consensus 475 ~~~~Gid~~~g~i~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~id~ii~~~~ 527 (557)
.++|+|+.+|++.||++.|||||+.||+++|+.|+|+|++|||||++|...|
T Consensus 476 -~~~G~d~~~g~i~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~id~ii~~~~ 527 (533)
T PTZ00212 476 -KTAGIDMEKGTVGDMKELGITESYKVKLSQLCSATEAAEMILRVDDIIRCAP 527 (533)
T ss_pred -CccceeccCCcccchhhccceecHHHHHHHHHHHHHHHHHHHhhhHhhhcCC
Confidence 7899999999999999999999999999999999999999999999998753
No 8
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=5.5e-104 Score=857.34 Aligned_cols=516 Identities=34% Similarity=0.594 Sum_probs=488.5
Q ss_pred CCccccccc--cccccchHHHHHHHHHHHHHHHHhhhcCCcccccceeecCCCCEEEeccHHHHhhhccccChHHHHHHH
Q 036490 3 SPVLVLKDS--LKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIE 80 (557)
Q Consensus 3 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iT~DG~tIl~~l~~~hP~a~ll~~ 80 (557)
.|..+++++ ....+|++++..|++||..+++++++||||+||+|||+++.|+++|||||+||+++|+++||+++|+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~ni~~~~~i~~~v~tslGP~G~~kmi~~~~G~~~iTnDG~tIlk~l~~~hP~akll~~ 84 (526)
T cd03339 5 RPFIIVREQEKKKRLKGLEAHKSHILAAKSVANILRTSLGPRGMDKILVSPDGEVTVTNDGATILEKMDVDHQIAKLLVE 84 (526)
T ss_pred CCeEEecCCCccccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCcEEEECCCCCEEEeCcHHHHHHHhcccCHHHHHHHH
Confidence 355556776 368899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhccccCCC--CcHHHHHHHHHHhh
Q 036490 81 LSRTQDEEVGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAMPIDA--NDRATVLGLVKSCI 158 (557)
Q Consensus 81 ~~~~~~~~~GDGttt~viL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~i~~--~~~~~l~~va~t~l 158 (557)
+|++|++++||||||+++|+++||+++.+|+++|+||..|++||+.|++.++++|++++++++. .+.+.|.++++|++
T Consensus 85 ~a~~q~~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~ia~tsl 164 (526)
T cd03339 85 LSKSQDDEIGDGTTGVVVLAGALLEQAEKLLDRGIHPIRIADGYEQACKIAVEHLEEIADKIEFSPDNKEPLIQTAMTSL 164 (526)
T ss_pred HHHhhhhhhcCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCcccHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999998753 35788999999999
Q ss_pred hccccchhHHHHHHHHHHHHhhcccccCCCccccCcccceEEEEecCCCCCCcEEEEeEEEeccccCCCCCcccccCceE
Q 036490 159 GTKFTSQFGDLLADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRI 238 (557)
Q Consensus 159 ~sk~~~~~~~~ls~lv~~a~~~v~~~~~~g~~~~d~~~~I~I~~i~G~~~~~S~li~Givl~~~~~~~~~~~~~~~n~~I 238 (557)
++|+.+.+.+.|++++++|+..+... ....+|++ +|+|.+++|++++||++++|++|++++.++ .|++.++||||
T Consensus 165 ~sk~~~~~~~~~s~i~v~av~~i~~~---~~~~~d~~-~I~i~ki~Ggs~~dS~~v~Givi~~~~~~~-~m~~~~~n~kI 239 (526)
T cd03339 165 GSKIVSRCHRQFAEIAVDAVLSVADL---ERKDVNFE-LIKVEGKVGGRLEDTKLVKGIVIDKDFSHP-QMPKEVKDAKI 239 (526)
T ss_pred cccchhhHHHHHHHHHHHHHHHHhhc---CCCccchH-HeEEEEecCcCHHHcceeeeEEEecccCCC-CCCceecCCCE
Confidence 99999889999999999999988631 11245554 699999999999999999999999999998 89999999999
Q ss_pred EEEecccccccccccceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCCeeEecCChh
Q 036490 239 ILLDSPLEYKKGENQTNAELVKEEDWGVMLKIEEDYIENLCMQIVKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKT 318 (557)
Q Consensus 239 ll~~~~Le~~k~~~~~~~~i~~~~~l~~~~~~E~~~i~~~v~~i~~~~~~lIi~~~~i~~~al~~L~~~~I~~v~~v~~~ 318 (557)
++++++|++++.+.+.++.+++.++++.+.++|+++++++++++.+.|++||+++++|++.+++||.++||+++++++++
T Consensus 240 ~ll~~~le~~~~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~~I~av~~v~~~ 319 (526)
T cd03339 240 AILTCPFEPPKPKTKHKLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANLVICQWGFDDEANHLLLQNGLPAVRWVGGV 319 (526)
T ss_pred EEEEecccCCccccceEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCEEEEeCCHH
Confidence 99999999999998999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCccccCCCCCCCCCcCCccceEEEEEECc--eEEEEEEecCCCCeEEEEEccCCHHHHHHHHHHHHHHHH
Q 036490 319 DNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGD--EFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMS 396 (557)
Q Consensus 319 ~le~Ia~~tGa~iis~~~~l~~~~lG~~~~~v~~~~ig~--~~~~~l~~~~~~~~~TIll~G~t~~~l~e~~~~l~dal~ 396 (557)
+|+||+++|||+++++++++++..+|+ |+.|+++.+|+ ++|++|++|++++.|||+|||+|+.+++|+||+++||++
T Consensus 320 ~LerIa~~tGa~ii~~l~~l~~~~LG~-~~~v~~~~ig~~~~~~~~i~g~~~~~~~TIllrG~t~~~l~E~er~l~DAl~ 398 (526)
T cd03339 320 EIELIAIATGGRIVPRFEDLSPEKLGK-AGLVREISFGTTKDKMLVIEGCPNSKAVTIFIRGGNKMIIEEAKRSLHDALC 398 (526)
T ss_pred HHHHHHHHhCCEEecchhhCChhhccc-CceEEEEEecCCCcEEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 99999999985 689999999999999999999999999999999999999
Q ss_pred HHHHHHhCCccccCCCchHHHHHHHHHHhhccCCCchhHHHHHHHHHhhhhHHHHHHhcCCCHHHHHHHHHHHhhCCCCc
Q 036490 397 VARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENA 476 (557)
Q Consensus 397 ~~~~~l~~g~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~~~~~~~~ 476 (557)
++++++++|++|||||++|++++.+|++++...++++++++++|++||+.||++|++|||+|+.+++.+++..|..+++.
T Consensus 399 ~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~~~~ 478 (526)
T cd03339 399 VVRNLIRDNRIVYGGGAAEISCSLAVEKAADKCSGIEQYAMRAFADALESIPLALAENSGLNPIETLSEVKARQVKEKNP 478 (526)
T ss_pred HHHHHhhCCCEEeCCCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999998888888999999999999999999999999999999999999999755446
Q ss_pred eEEEeCCCCcccccccCccccchHHHHHHHHHHHHHHHHHHhhhhhhc
Q 036490 477 WIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVS 524 (557)
Q Consensus 477 ~~Gid~~~g~i~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~id~ii~ 524 (557)
++|||+.+|++.||++.|||||+.||+++|+.|+|+|++|||||++|.
T Consensus 479 ~~Gid~~~g~~~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~iD~ii~ 526 (526)
T cd03339 479 HLGIDCLGRGTNDMKEQKVFETLISKKQQILLATQVVKMILKIDDVIV 526 (526)
T ss_pred eEeeecCCCccCchhhcCceecHHHHHHHHHHHHHHHHHHhhhceecC
Confidence 899999999999999999999999999999999999999999999873
No 9
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=6.6e-104 Score=855.31 Aligned_cols=516 Identities=36% Similarity=0.586 Sum_probs=489.6
Q ss_pred Ccccccc--ccccccchHHHHHHHHHHHHHHHHhhhcCCcccccceeecCCCCEEEeccHHHHhhhccccChHHHHHHHH
Q 036490 4 PVLVLKD--SLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIEL 81 (557)
Q Consensus 4 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iT~DG~tIl~~l~~~hP~a~ll~~~ 81 (557)
|..++++ +...++|.+++..|++||..+++++++||||+||+|||+++.|+++|||||+||+++|+++||+++|++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~a~~~ni~a~~~i~~~vkttlGP~G~~KmI~~~~G~~~ITnDG~tIlk~l~~~hP~akll~~~ 89 (532)
T TIGR02343 10 PFIIIKDQDKKKRLKGLEAIKSNIAAAKSVASILRTSLGPKGMDKMLQSPDGDITVTNDGATILSQMDVDNPIAKLMVEL 89 (532)
T ss_pred CchhhccccccccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEcCCCCEEEeCcHHHHHHHccCCCHHHHHHHHH
Confidence 4455666 46789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhccccCC--CCcHHHHHHHHHHhhh
Q 036490 82 SRTQDEEVGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAMPID--ANDRATVLGLVKSCIG 159 (557)
Q Consensus 82 ~~~~~~~~GDGttt~viL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~i~--~~~~~~l~~va~t~l~ 159 (557)
|++|++++||||||+++|+++||+++.+|+++|+||..|++||+.|++.++++|++++++++ ..+++.|.++++|+++
T Consensus 90 a~~qd~~~GDGTttvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~ia~t~l~ 169 (532)
T TIGR02343 90 SKSQDDEIGDGTTGVVVLAGALLEQAEALLDKGIHPIKIAEGFEVAARVAVEHLEEISEEISDDNNNKEPLIQAAKTSLG 169 (532)
T ss_pred HHHHHHHhcCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCcCCCCHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999874 3357889999999999
Q ss_pred ccccchhHHHHHHHHHHHHhhcccccCCCccccCcccceEEEEecCCCCCCcEEEEeEEEeccccCCCCCcccccCceEE
Q 036490 160 TKFTSQFGDLLADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRII 239 (557)
Q Consensus 160 sk~~~~~~~~ls~lv~~a~~~v~~~~~~g~~~~d~~~~I~I~~i~G~~~~~S~li~Givl~~~~~~~~~~~~~~~n~~Il 239 (557)
+|+.+.+.+.|++++++|+..+... ....+|++ +|+|++++|+++++|++++|++|++++.++ .|++.++||||+
T Consensus 170 sK~~~~~~~~ls~i~~~av~~i~~~---~~~~~d~~-~I~i~ki~Ggs~~ds~~v~Gi~i~~~~~~~-~m~~~~~n~kI~ 244 (532)
T TIGR02343 170 SKIVSKCHRRFAEIAVDAVLMVADM---ERRDVDFD-LIKVEGKVGGSLEDTKLIKGIIIDKDFSHP-QMPKEVKDAKIA 244 (532)
T ss_pred cchhhHHHHHHHHHHHHHHHhhhhc---CCCcCCHH-HeeEEEecCCCcccceeEeeEEEecCcCCC-CCCeeecCCcEE
Confidence 9998888999999999999988531 11356775 699999999999999999999999999998 899999999999
Q ss_pred EEecccccccccccceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCCeeEecCChhH
Q 036490 240 LLDSPLEYKKGENQTNAELVKEEDWGVMLKIEEDYIENLCMQIVKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTD 319 (557)
Q Consensus 240 l~~~~Le~~k~~~~~~~~i~~~~~l~~~~~~E~~~i~~~v~~i~~~~~~lIi~~~~i~~~al~~L~~~~I~~v~~v~~~~ 319 (557)
+++++|++++++.+.++.+++.+++..+.+.|++++++++++|.+.|++||+++++|++.+++||.++||++++++++++
T Consensus 245 l~~~~le~~~~~~~~~~~i~~~~~~~~~~~~E~~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~L~~~~i~~v~~~~~~~ 324 (532)
T TIGR02343 245 ILTCPFEPPKPKTKHKLDISSVEEYKKLQKYEQQKFAEMIDDIKKSGANIVICQWGFDDEANHLLLQNDLPAVRWVGGHE 324 (532)
T ss_pred EEEeeccccccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHHCCcEEEEcCCHHH
Confidence 99999999999989999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCccccCCCCCCCCCcCCccceEEEEEECc--eEEEEEEecCCCCeEEEEEccCCHHHHHHHHHHHHHHHHH
Q 036490 320 NNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGD--EFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSV 397 (557)
Q Consensus 320 le~Ia~~tGa~iis~~~~l~~~~lG~~~~~v~~~~ig~--~~~~~l~~~~~~~~~TIll~G~t~~~l~e~~~~l~dal~~ 397 (557)
|+||+++|||++++++++++++.+|+ |+.|+++.+|+ ++|+++++|++++.+||+|||+|+.+++|.||+++||+++
T Consensus 325 l~~Ia~~tGa~~i~~l~~~~~~~LG~-a~~v~~~~ig~~~~~~~~i~~~~~~~~~TIllrG~t~~~l~E~er~l~DAl~~ 403 (532)
T TIGR02343 325 LELIAIATGGRIVPRFEELSEDKLGK-AGLVREISFGTTKDRMLVIEQCKNSKAVTIFIRGGNKMIIEEAKRSIHDALCV 403 (532)
T ss_pred HHHHHHHhCCEEecccccCCHhHCcc-cceEEEEEecCCcceEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 99999999987 4899999999999999999999999999999999999999
Q ss_pred HHHHHhCCccccCCCchHHHHHHHHHHhhccCCCchhHHHHHHHHHhhhhHHHHHHhcCCCHHHHHHHHHHHhhCCCCce
Q 036490 398 ARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAW 477 (557)
Q Consensus 398 ~~~~l~~g~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~~~~~~~~~ 477 (557)
++++++++++|||||++|++|+++|++++...++++|+++++|++||+.||++|++|||+|+.+++.++++.|..+.+.+
T Consensus 404 v~~~i~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~fa~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~ 483 (532)
T TIGR02343 404 VRNLIKNSRIVYGGGAAEISCSLAVSQEADKYSGVEQYAIRAFADALEEIPMALAENSGLDPIGTLSDLKSLQMKEKNPH 483 (532)
T ss_pred HHHHHhCCCEEeCcCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCCc
Confidence 99999999999999999999999999988888899999999999999999999999999999999999999997553468
Q ss_pred EEEeCCCCcccccccCccccchHHHHHHHHHHHHHHHHHHhhhhhhcC
Q 036490 478 IGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSG 525 (557)
Q Consensus 478 ~Gid~~~g~i~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~id~ii~~ 525 (557)
+|+|+.+|++.||++.|||||+.||+++|+.|+|+|++||+||++|.+
T Consensus 484 ~Gid~~~g~i~d~~~~gV~Dp~~vk~~al~~A~e~a~~iL~id~ii~~ 531 (532)
T TIGR02343 484 LGVDCLGDGTNDMKEQGVFETLIGKKQQIQLATQLVRMILKIDDVISP 531 (532)
T ss_pred cCeeCCCCccccchhccCeecHHHHHHHHHHHHHHHHHHHhHhhhccC
Confidence 999999999999999999999999999999999999999999999864
No 10
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.2e-103 Score=852.25 Aligned_cols=508 Identities=31% Similarity=0.485 Sum_probs=484.5
Q ss_pred cccccccccchHHHHHHHHHHHHHHHHhhhcCCcccccceeecC--CCCEEEeccHHHHhhhccccChHHHHHHHHHHhh
Q 036490 8 LKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDA--SGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQ 85 (557)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~--~g~~~iT~DG~tIl~~l~~~hP~a~ll~~~~~~~ 85 (557)
++++...++|.+++..|+.||..+++++++||||+||+|||+++ .|+++|||||+||+++|+++||+++|++++|++|
T Consensus 2 ~~~~~~~~~~~~a~~~n~~~~~~i~~~v~tslGP~G~~Kmi~~~~~~g~~~iTnDG~tIlk~l~~~hP~akll~~~a~~q 81 (517)
T cd03336 2 LKDGAQEEKGETARLSSFVGAIAIGDLVKTTLGPKGMDKILQSVGRSGGVTVTNDGATILKSIGVDNPAAKVLVDISKVQ 81 (517)
T ss_pred CCCccccccHHHHHHHHHHHHHHHHHHHhcCCCCCcCceEeecCCCCCCeEEeccHHHHHHHccCcChHHHHHHHHHHHH
Confidence 45666788999999999999999999999999999999999998 4999999999999999999999999999999999
Q ss_pred hhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhccccCCC---CcHHHHHHHHHHhhhccc
Q 036490 86 DEEVGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAMPIDA---NDRATVLGLVKSCIGTKF 162 (557)
Q Consensus 86 ~~~~GDGttt~viL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~i~~---~~~~~l~~va~t~l~sk~ 162 (557)
++++||||||+|+|+++||+++.+|+++|+||..|++||+.|.+.++++|++++++++. .+.+.|.++++|+++||+
T Consensus 82 d~~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~l~~ia~t~lssk~ 161 (517)
T cd03336 82 DDEVGDGTTSVTVLAAELLREAEKLVAQKIHPQTIIEGYRMATAAAREALLSSAVDHSSDEEAFREDLLNIARTTLSSKI 161 (517)
T ss_pred HhHhCCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCcccccchhHHHHHHHHHhhccccc
Confidence 99999999999999999999999999999999999999999999999999999998853 135789999999999999
Q ss_pred cchhHHHHHHHHHHHHhhcccccCCCccccCcccceEEEEecCCCCCCcEEEEeEEEeccccCCCCCcccccCceEEEEe
Q 036490 163 TSQFGDLLADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLD 242 (557)
Q Consensus 163 ~~~~~~~ls~lv~~a~~~v~~~~~~g~~~~d~~~~I~I~~i~G~~~~~S~li~Givl~~~~~~~~~~~~~~~n~~Ill~~ 242 (557)
.+.++++|++++++|+..++. .+|.+ +|++++++|+++++|++++|+++++++.+ .|++.++||+|++++
T Consensus 162 ~~~~~~~l~~l~~~A~~~v~~-------~~~~~-~i~i~ki~G~s~~ds~l~~G~v~~~~~~~--~~~~~~~n~kIli~~ 231 (517)
T cd03336 162 LTQDKEHFAELAVDAVLRLKG-------SGNLD-AIQIIKKLGGSLKDSYLDEGFLLDKKIGV--NQPKRIENAKILIAN 231 (517)
T ss_pred cchhHHHHHHHHHHHHHHhhc-------cCCcc-ceeEEEccCCCccceEEEeeEEEecccCC--CCCCeeccccEEEEe
Confidence 999999999999999999852 24443 59999999999999999999999998766 479999999999999
Q ss_pred cccccccccc-cceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCCeeEecCChhHHH
Q 036490 243 SPLEYKKGEN-QTNAELVKEEDWGVMLKIEEDYIENLCMQIVKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNN 321 (557)
Q Consensus 243 ~~Le~~k~~~-~~~~~i~~~~~l~~~~~~E~~~i~~~v~~i~~~~~~lIi~~~~i~~~al~~L~~~~I~~v~~v~~~~le 321 (557)
++|++++++. +.++.+++.+++..+.+.|+++++++++.|.+.|++++++++.|++.+++||.++||++++++++.+|+
T Consensus 232 ~~le~~~~~~~~~~~~~~~~~~~~~l~~~E~~~~~~~v~~I~~~gv~~v~~~~~I~~~~~~~l~~~~I~av~~v~~~~L~ 311 (517)
T cd03336 232 TPMDTDKIKIFGAKVRVDSTAKVAEIEEAEKEKMKNKVEKILKHGINCFINRQLIYNYPEQLFADAGIMAIEHADFDGVE 311 (517)
T ss_pred cCCCcccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCCcEEEecCCHHHHH
Confidence 9999999887 789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCccccCCCCCCCCCcCCccceEEEEEECceEEEEEEecCCCCeEEEEEccCCHHHHHHHHHHHHHHHHHHHHH
Q 036490 322 RIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNI 401 (557)
Q Consensus 322 ~Ia~~tGa~iis~~~~l~~~~lG~~~~~v~~~~ig~~~~~~l~~~~~~~~~TIll~G~t~~~l~e~~~~l~dal~~~~~~ 401 (557)
||+++|||++++++++++++++|+ |+.|++..+|+++|++|++|++++.|||+|||+|+.+++|.+|+++||+++++++
T Consensus 312 rIa~~tGa~ii~~l~~~~~~~LG~-~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~er~i~Dal~~~~~~ 390 (517)
T cd03336 312 RLALVTGGEIASTFDHPELVKLGT-CKLIEEIMIGEDKLIRFSGVAAGEACTIVLRGASQQILDEAERSLHDALCVLAQT 390 (517)
T ss_pred HHHHHhCCEEecccCCCCcccccc-cceEEEEEECCeEEEEEEccCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCccccCCCchHHHHHHHHHHhhccCCCchhHHHHHHHHHhhhhHHHHHHhcCCCHHHHHHHHHHHhhCCCCceEEEe
Q 036490 402 IKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGID 481 (557)
Q Consensus 402 l~~g~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~~~~~~~~~~Gid 481 (557)
+++|++|||||++|++|+..|++++++.++++|+++++|++||+.||++|++|||+|+.+++.+|+..|.+++ .++|||
T Consensus 391 i~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~~-~~~Gid 469 (517)
T cd03336 391 VKDTRVVLGGGCSEMLMAKAVEELAKKTPGKKSLAIEAFAKALRQLPTIIADNAGYDSAELVAQLRAAHYNGN-TTAGLD 469 (517)
T ss_pred HhCCCEEeCCCHHHHHHHHHHHHHhhhCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-Cceeee
Confidence 9999999999999999999999998888899999999999999999999999999999999999999998775 789999
Q ss_pred CCCCcccccccCccccchHHHHHHHHHHHHHHHHHHhhhhhhcCCc
Q 036490 482 GNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIK 527 (557)
Q Consensus 482 ~~~g~i~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~id~ii~~~~ 527 (557)
+.+|++.||++.|||||+.||+++|+.|+|+|++||+||++|...|
T Consensus 470 ~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~ 515 (517)
T cd03336 470 MRKGTVGDMKELGITESFKVKRQVLLSASEAAEMILRVDDIIKCAP 515 (517)
T ss_pred cCCCCccchhhcCceecHHHHHHHHHHHHHHHHHHHhHhHHhhcCC
Confidence 9999999999999999999999999999999999999999998755
No 11
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2e-103 Score=853.04 Aligned_cols=511 Identities=35% Similarity=0.631 Sum_probs=488.1
Q ss_pred cccccccccccchHHHHHHHHHHHHHHHHhhhcCCcccccceeecCCCCEEEeccHHHHhhhccccChHHHHHHHHHHhh
Q 036490 6 LVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQ 85 (557)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iT~DG~tIl~~l~~~hP~a~ll~~~~~~~ 85 (557)
.+++++...++|.+++.+|+.||..+++++++||||+||+|||+++.|+++|||||+|||++|+++||+++|+++++++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~ni~a~~~i~~~v~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~akll~~~a~~q 82 (522)
T cd03340 3 ILLKEGTDTSQGKGQLISNINACQAIADAVRTTLGPRGMDKLIVDGRGKVTISNDGATILKLLDIVHPAAKTLVDIAKSQ 82 (522)
T ss_pred ccccCCcccccHHHHHHHHHHHHHHHHHHHhcCCCCCcCceEEEcCCCCEEEeccHHHHHHHccccCHHHHHHHHHHHHh
Confidence 45678888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhccccCCCC----cHHHHHHHHHHhhhcc
Q 036490 86 DEEVGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAMPIDAN----DRATVLGLVKSCIGTK 161 (557)
Q Consensus 86 ~~~~GDGttt~viL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~i~~~----~~~~l~~va~t~l~sk 161 (557)
++++||||||+|+|+++||+++.+++++|+||+.|++||+.|++.++++|++++++++.. +++.|.++++|+++||
T Consensus 83 ~~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~~l~~ia~t~l~sK 162 (522)
T cd03340 83 DAEVGDGTTSVVVLAGEFLKEAKPFIEDGVHPQIIIRGYRKALQLAIEKIKEIAVNIDKEDKEEQRELLEKCAATALNSK 162 (522)
T ss_pred HhHhCCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCcccccccHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999999999999999999988642 3677999999999999
Q ss_pred ccchhHHHHHHHHHHHHhhcccccCCCccccCcccceEEEEecCCCCCCcEEEEeEEEeccccCCC--CCcccccCceEE
Q 036490 162 FTSQFGDLLADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPG--KMRRKIVNPRII 239 (557)
Q Consensus 162 ~~~~~~~~ls~lv~~a~~~v~~~~~~g~~~~d~~~~I~I~~i~G~~~~~S~li~Givl~~~~~~~~--~~~~~~~n~~Il 239 (557)
+.+.++++|++++++|+..+++ ++|.+ +|+|+++.|++.++|++++|++|++++.+++ +|++.++||+|+
T Consensus 163 ~~~~~~~~l~~l~~~A~~~v~~-------~~~~~-~I~i~~i~Ggs~~ds~lv~Giv~~k~~~~~~~~~~~~~~~n~kIl 234 (522)
T cd03340 163 LIASEKEFFAKMVVDAVLSLDD-------DLDLD-MIGIKKVPGGSLEDSQLVNGVAFKKTFSYAGFEQQPKKFKNPKIL 234 (522)
T ss_pred cchhHHHHHHHHHHHHHHHhcc-------cCChh-HheEeeecCCChhhceeeeeEEEecccCccccccCCccccCCeEE
Confidence 9999999999999999999964 23443 6999999999999999999999999999762 468999999999
Q ss_pred EEecccccccccccceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCCeeEecCChhH
Q 036490 240 LLDSPLEYKKGENQTNAELVKEEDWGVMLKIEEDYIENLCMQIVKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTD 319 (557)
Q Consensus 240 l~~~~Le~~k~~~~~~~~i~~~~~l~~~~~~E~~~i~~~v~~i~~~~~~lIi~~~~i~~~al~~L~~~~I~~v~~v~~~~ 319 (557)
+++++|++.+++.+.++.+.+.++++.+.+.|++++.++++.+.+.|+++|+++++|++.+++||.++||++++++++++
T Consensus 235 l~~~~Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~vvl~~~~i~d~a~~~l~~~~I~~~~~v~~~~ 314 (522)
T cd03340 235 LLNVELELKAEKDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIVKSGANVVLSKLPIGDLATQYFADRDIFCAGRVPEED 314 (522)
T ss_pred EEeCCCCCCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCcHHHHHHHHHCCcEEEEeCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCccccCCCCCCCCCcCCccceEEEEEECceEEEEEEecCCCCeEEEEEccCCHHHHHHHHHHHHHHHHHHH
Q 036490 320 NNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVAR 399 (557)
Q Consensus 320 le~Ia~~tGa~iis~~~~l~~~~lG~~~~~v~~~~ig~~~~~~l~~~~~~~~~TIll~G~t~~~l~e~~~~l~dal~~~~ 399 (557)
|+|||++|||++++++++++++.+|+ |+.|+++++|+++|++|++|..++.+||+|||+++..++|.+|+++||+++++
T Consensus 315 l~rIa~~tGa~ii~~l~~l~~~~LG~-~~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~~l~E~er~i~Dal~~~~ 393 (522)
T cd03340 315 LKRVAQATGGSIQTTVSNITDDVLGT-CGLFEERQVGGERYNIFTGCPKAKTCTIILRGGAEQFIEEAERSLHDAIMIVR 393 (522)
T ss_pred HHHHHHHHCCEEeeccccCCcccccc-ceEEEEEEECCEEEEEEECCCCCceEEEEEECCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCccccCCCchHHHHHHHHHHhhccCCCchhHHHHHHHHHhhhhHHHHHHhcCCCHHHHHHHHHHHhhCCCCceEE
Q 036490 400 NIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIG 479 (557)
Q Consensus 400 ~~l~~g~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~~~~~~~~~~G 479 (557)
+++++|++|||||++|++++.+|+++++..++++++++++|++||+.||++|++|||+|+.+++.+|+..|..++..++|
T Consensus 394 ~~i~~~~vvpGGG~~E~~ls~~l~~~~~~~~~~~~~~~~~fa~aL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~G 473 (522)
T cd03340 394 RAIKNDSVVAGGGAIEMELSKYLRDYSRTIAGKQQLVINAFAKALEIIPRQLCDNAGFDATDILNKLRQKHAQGGGKWYG 473 (522)
T ss_pred HHhcCCCEEECcCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCCeee
Confidence 99999999999999999999999998888889999999999999999999999999999999999999999876425899
Q ss_pred EeCCCCcccccccCccccchHHHHHHHHHHHHHHHHHHhhhhhhcC
Q 036490 480 IDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSG 525 (557)
Q Consensus 480 id~~~g~i~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~id~ii~~ 525 (557)
||+.+|++.||++.|||||+.||+++|+.|+|+|++||+||++|..
T Consensus 474 id~~~g~i~d~~~~gV~dp~~vk~~~i~~A~e~a~~iL~id~ii~~ 519 (522)
T cd03340 474 VDINNEGIADNFEAFVWEPSLVKINALTAATEAACLILSVDETIKN 519 (522)
T ss_pred eeCCCCcccchhhcCceEcHHHHHHHHHHHHHHHHHHhhhhhheeC
Confidence 9999999999999999999999999999999999999999999976
No 12
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=8.9e-103 Score=848.90 Aligned_cols=513 Identities=32% Similarity=0.507 Sum_probs=485.8
Q ss_pred ccccchHHHHHHHHHHHHHHHHhhhcCCcccccceeecCCCCEEEeccHHHHhhhccccChHHHHHHHHHHhhhhhcCCC
Q 036490 13 KRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDG 92 (557)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iT~DG~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDG 92 (557)
++++|+++++.|++||..|++++++||||+||+|||+++.|+++|||||+||+++|+++||+++|++++|++|++++|||
T Consensus 6 ~~~~~~~~~~~ni~~~~~l~~~vkttlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~hP~akll~~~a~~qd~~~GDG 85 (536)
T TIGR02340 6 ERTSGQDVRTQNVTAAMAIANIVKTSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKILVELAQLQDREVGDG 85 (536)
T ss_pred ceecHHHHHHHHHHHHHHHHHHHhcCcCCCcCceEEEcCCCCEEEeccHHHHHHHhcccChHHHHHHHHHHHHHHHhCCC
Confidence 47789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhh-ccccCCCCcHHHHHHHHHHhhhccccchhHHHHH
Q 036490 93 TTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDT-IAMPIDANDRATVLGLVKSCIGTKFTSQFGDLLA 171 (557)
Q Consensus 93 ttt~viL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~-~s~~i~~~~~~~l~~va~t~l~sk~~~~~~~~ls 171 (557)
|||+++|+++||+++.+++++|+||+.|++||+.|++.++++|++ +++|++..+.+.+.++++|+++||+.+.+++.|+
T Consensus 86 TTt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~ls 165 (536)
T TIGR02340 86 TTSVVIIAAELLKRADELIKRKVHPTSIISGYRLACKEAVKYIKENLSVSVDELGREALINVAKTSMSSKIIGLDSDFFS 165 (536)
T ss_pred hhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHhccccchhhHHHHH
Confidence 999999999999999999999999999999999999999999987 4888876678889999999999999999999999
Q ss_pred HHHHHHHhhcccccCCCccccCcccceEEEEecCCCCCCcEEEEeEEEeccccCCCCCcccccCceEEEEeccccccccc
Q 036490 172 DLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGE 251 (557)
Q Consensus 172 ~lv~~a~~~v~~~~~~g~~~~d~~~~I~I~~i~G~~~~~S~li~Givl~~~~~~~~~~~~~~~n~~Ill~~~~Le~~k~~ 251 (557)
+++++|+..++.+..+|...+|++ +|+++++.|++.++|++++|++|++++.++ +|++.++||+|++++++|++.+++
T Consensus 166 ~l~~~A~~~v~~~~~~g~~~~~~~-~I~i~k~~G~s~~~s~~i~Gi~i~~~~~~~-~m~~~~~n~kIli~~~~L~~~~~~ 243 (536)
T TIGR02340 166 NIVVDAVLAVKMTNENGETKYPIK-AVNILKAHGGSARESYLVKGYALNCTRASQ-QMPKRIKKAKIACLDFNLQKQKMA 243 (536)
T ss_pred HHHHHHHHHHhcccccCccccchH-HeEEEEecCCCccccEEEEEEEEecccCCC-CCcceecCCcEEEEecCCCCCccc
Confidence 999999999963222454457776 699999999999999999999999999998 899999999999999999999999
Q ss_pred ccceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCCeeEecCChhHHHHHHHHhCCcc
Q 036490 252 NQTNAELVKEEDWGVMLKIEEDYIENLCMQIVKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVI 331 (557)
Q Consensus 252 ~~~~~~i~~~~~l~~~~~~E~~~i~~~v~~i~~~~~~lIi~~~~i~~~al~~L~~~~I~~v~~v~~~~le~Ia~~tGa~i 331 (557)
.+.++.+++.++++.+.+.|+++++++++.|.+.+++||+++++|++.+++||.+++|++++++++++|+||+++|||++
T Consensus 244 ~~~~~~~~~~~~le~~~~~E~~~i~~~i~~I~~~g~~lvi~~k~I~~~a~~~L~k~~I~~i~rv~~~~LerIa~~tGa~i 323 (536)
T TIGR02340 244 LGVQIVVDDPAKLEGIRQREADITKERIKKILKAGANVVLTTGGIDDMCLKYFVEAGAMGVRRCKKEDLKRIAKATGGTL 323 (536)
T ss_pred CceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCCcEEEecCCHHHHHHHHHHhCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCC------CCCCcCCccceEEEEEECceEEEEEEecCCCCeEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHhCC
Q 036490 332 VNRPDEL------QESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNP 405 (557)
Q Consensus 332 is~~~~l------~~~~lG~~~~~v~~~~ig~~~~~~l~~~~~~~~~TIll~G~t~~~l~e~~~~l~dal~~~~~~l~~g 405 (557)
++++.++ ++.++|+ |+.|+++++|+++|++|++|.++++|||+|||+|+.+++|++|+++||++++++++++|
T Consensus 324 i~~~~~l~~~~~~~~~~LG~-~~~v~~~~ig~~~~~~i~~~~~~~~~TIlirG~t~~~l~E~~r~i~DAl~~~~~~~~~~ 402 (536)
T TIGR02340 324 VSTLADLEGEETFDASYLGF-ADEVVEERIADDECILIKGTKGRKSASIILRGANDFMLDEMERSLHDALCVVKRTLESN 402 (536)
T ss_pred ecchhhcCcccccccccccc-CceEEEEEECCeEEEEEEcCCCCCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9988654 4456999 99999999999999999999989999999999999999999999999999999999999
Q ss_pred ccccCCCchHHHHHHHHHHhhccCCCchhHHHHHHHHHhhhhHHHHHHhcCCCHHHHHHHHHHHhhCCC-------CceE
Q 036490 406 KLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGE-------NAWI 478 (557)
Q Consensus 406 ~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~~~~~~-------~~~~ 478 (557)
++|||||++|++++.+|+++++..++++++++++|++||+.||++|++|||+|+.+++.+|+..|..++ +.++
T Consensus 403 ~vVpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~fa~AL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~~~~~~~~ 482 (536)
T TIGR02340 403 SVVPGGGAVETALSIYLENFATTLGSREQLAIAEFAEALLIIPKVLAVNAALDSTELVAKLRAYHAAAQLKPEKKHLKWY 482 (536)
T ss_pred CEEECCCHHHHHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCcccccccCceE
Confidence 999999999999999999888888899999999999999999999999999999999999999887652 3579
Q ss_pred EEeCCCCcccccccCccccchHHHHHHHHHHHHHHHHHHhhhhhhcCCcc
Q 036490 479 GIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKK 528 (557)
Q Consensus 479 Gid~~~g~i~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~id~ii~~~~~ 528 (557)
|||+.+|++.||++.|||||+.+|.++|+.|+|+|++|||||++|...|+
T Consensus 483 Gid~~~g~~~d~~~~gI~Dp~~~k~~~l~~A~e~a~~iL~ID~ii~~~~~ 532 (536)
T TIGR02340 483 GLDLSNGKIRDNKEAGVLEPAVSKVKSLKFATEAAITILRIDDLIKLNPE 532 (536)
T ss_pred eEEccCCccccchhccceecHHHHHHHHHHHHHHHHHHHhhhhhhhcCCC
Confidence 99999999999999999999999999999999999999999999988653
No 13
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=9.4e-103 Score=845.25 Aligned_cols=507 Identities=35% Similarity=0.565 Sum_probs=484.4
Q ss_pred cccchHHHHHHHHHHHHHHHHhhhcCCcccccceeecCCCCEEEeccHHHHhhhccccChHHHHHHHHHHhhhhhcCCCh
Q 036490 14 RESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGT 93 (557)
Q Consensus 14 ~~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iT~DG~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGt 93 (557)
...+.+++.+|+.||..+++++++||||+||+|||+++.|+++|||||+|||++|+++||+++|++++|++|++++||||
T Consensus 4 ~~~~~~~~~~ni~a~~~ia~~~kttlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hP~akll~~~a~~qd~~~GDGT 83 (517)
T TIGR02342 4 KDKPTDVRTSNIVAAKAVADAIRTSLGPRGMDKMIQSGNGEVIITNDGATILKQMGVIHPAAKMLVELSKAQDIEAGDGT 83 (517)
T ss_pred chhhHHHHHHHHHHHHHHHHHHhCCcCCCCCcEEEEcCCCCEEEeCCHHHHHHhccccChHHHHHHHHHHHHHHHhCCCc
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhccccCCCCcHHHHHHHHHHhhhccccchhHHHHHHH
Q 036490 94 TSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAMPIDANDRATVLGLVKSCIGTKFTSQFGDLLADL 173 (557)
Q Consensus 94 tt~viL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~i~~~~~~~l~~va~t~l~sk~~~~~~~~ls~l 173 (557)
||+++|+++||+++.+|+++|+||+.|++||+.|++.++++|+++++|++..+++.|.++++|++++|+.+.+.+.|+++
T Consensus 84 tt~viLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~ls~l 163 (517)
T TIGR02342 84 TSVVILAGALLGACETLLERGIHPTTISESFQIAADEAIKILDEMSIPVDLSDREILIKSATTSLSSKVVSQYSSLLAPL 163 (517)
T ss_pred chHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCccCHHHHHHHHHHHhccccchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987767889999999999999999999999999
Q ss_pred HHHHHhhcccccCCCccccCcccceEEEEecCCCCCCcEEEEeEEEeccccCCCCCcccccCceEEEEeccccccccccc
Q 036490 174 AIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENQ 253 (557)
Q Consensus 174 v~~a~~~v~~~~~~g~~~~d~~~~I~I~~i~G~~~~~S~li~Givl~~~~~~~~~~~~~~~n~~Ill~~~~Le~~k~~~~ 253 (557)
+++|+..++.+..+ ..+|++ +|+|.++.|++.++|++++|++|++++.++.+||+.++||+|++++++|++.+++..
T Consensus 164 ~~~a~~~v~~~~~~--~~~~~~-~i~i~k~~Ggs~~ds~li~Givl~k~~~~~~~mpk~i~n~kI~ll~~~Le~~~~~~~ 240 (517)
T TIGR02342 164 AVDAVLKVIDPEND--KNVDLN-DIKVVKKLGGTIDDTELIEGLVFTQKASRSAGGPTRIEKAKIGLIQFQISPPKTDME 240 (517)
T ss_pred HHHHHHHHhccccC--CccCHH-HeeEEeccCCChhhcEEEeeEEEeccccccCCCCccccCCcEEEEecCCCCCccccc
Confidence 99999999742112 257765 699999999999999999999999999984489999999999999999999999999
Q ss_pred ceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCC-----CHHHHHHHHHcCCeeEecCChhHHHHHHHHhC
Q 036490 254 TNAELVKEEDWGVMLKIEEDYIENLCMQIVKFKPDLVITEKGL-----SDLACHYLSKAGVSAIRRLRKTDNNRIAKACG 328 (557)
Q Consensus 254 ~~~~i~~~~~l~~~~~~E~~~i~~~v~~i~~~~~~lIi~~~~i-----~~~al~~L~~~~I~~v~~v~~~~le~Ia~~tG 328 (557)
.++.+++.++++.++++|+++++++++++.+.|++||+++++| ++.+++||.++||++++++++++|+|||++||
T Consensus 241 ~~~~~~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~lvi~~~~I~~~~l~~l~~~~l~~~~I~av~~v~~~~LerIa~~tG 320 (517)
T TIGR02342 241 NQVIVNDYAQMDRVLKEERKYILNIVKKIKKTGCNVLLIQKSILRDAVNDLALHFLAKMKIMVVKDIEREEVEFICKTIG 320 (517)
T ss_pred ceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHhhCCceEEecCCHHHHHHHHHHHC
Confidence 9999999999999999999999999999999999999999998 99999999999999999999999999999999
Q ss_pred CccccCCCCCCCCCcCCccceEEEEEECceEEEEEEecCC-CCeEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHhCCcc
Q 036490 329 AVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKD-PKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKL 407 (557)
Q Consensus 329 a~iis~~~~l~~~~lG~~~~~v~~~~ig~~~~~~l~~~~~-~~~~TIll~G~t~~~l~e~~~~l~dal~~~~~~l~~g~v 407 (557)
|+++++++++++.++|+ |+.|+++++|+++|+++++|++ ++.+||+|||+|+.+++|++|+++||+++++++++++++
T Consensus 321 a~ii~~~~~l~~~~LG~-~~~v~~~~~~~~~~~~i~~~~~~~~~~tIllrG~t~~~l~E~er~i~DAl~~v~~~~~~~~~ 399 (517)
T TIGR02342 321 CKPIASIDHFTADKLGS-AELVEEVTTDGGKIIKITGIQNAGKTVTVLLRGSNKLVIDEAERSLHDALCVIRSLVKKRGL 399 (517)
T ss_pred CEEEcchhhcCcccCcC-CceEEEEEECCeEEEEEEccCCCCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCE
Confidence 99999999999999999 9999999999999999999987 489999999999999999999999999999999999899
Q ss_pred ccCCCchHHHHHHHHHHhhccCCCchhHHHHHHHHHhhhhHHHHHHhcCCCHHHHHHHHHHHhhCCCCceEEEeCCCCcc
Q 036490 408 VPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAI 487 (557)
Q Consensus 408 vpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~~~~~~~~~~Gid~~~g~i 487 (557)
|||||++|++|+.+|++++++.++++|+++++|++||+.||++|++|||+|+.+++.+|+..|..++ .++|+|+.+|++
T Consensus 400 VpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~-~~~Gid~~~g~i 478 (517)
T TIGR02342 400 IPGGGAPEIEIAIKLSKLARTMKGVESYCVRAFADALEVIPYTLAENAGLNPIDVVTELRNRHANGE-KYAGISVRKGGI 478 (517)
T ss_pred EECcCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCC-CccceecCCCCc
Confidence 9999999999999999998888899999999999999999999999999999999999999998775 789999999999
Q ss_pred cccccCccccchHHHHHHHHHHHHHHHHHHhhhhhhcC
Q 036490 488 SDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSG 525 (557)
Q Consensus 488 ~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~id~ii~~ 525 (557)
.||++.|||||+.||+++|+.|+|+|++|||||++|..
T Consensus 479 ~d~~~~gI~dp~~vk~~ai~~A~e~a~~iL~iD~ii~~ 516 (517)
T TIGR02342 479 TDMLEEEVLQPLLVTTSAVTLASETVRMILKIDDIVFT 516 (517)
T ss_pred cchhhccceEcHHHHHHHHHHHHHHHHHHhcccceeec
Confidence 99999999999999999999999999999999999865
No 14
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.5e-102 Score=844.68 Aligned_cols=512 Identities=36% Similarity=0.638 Sum_probs=488.4
Q ss_pred CccccccccccccchHHHHHHHHHHHHHHHHhhhcCCcccccceeecCCCCEEEeccHHHHhhhccccChHHHHHHHHHH
Q 036490 4 PVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSR 83 (557)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iT~DG~tIl~~l~~~hP~a~ll~~~~~ 83 (557)
|..+++++...++|.+++..|+.||.+++++|++||||+||+|||+++.| ++|||||+|||++|+++||+++|++++|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~ni~a~~~i~~~v~ttlGP~G~~k~i~~~~g-~~iTnDG~TIlk~i~~~hP~a~ll~~~a~ 81 (522)
T TIGR02345 3 TIVLLKEGTDTSQGKGQLISNINACVAIAEILKTTLGPRGMDKLIVGKNG-ATVSNDGATILKLLDIVHPAAKTLVDIAK 81 (522)
T ss_pred ccchhcCCcccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCceEEECCCC-cEEeCcHHHHHHHhcccChHHHHHHHHHH
Confidence 44567888889999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred hhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhccccCCC---CcHHHHHHHHHHhhhc
Q 036490 84 TQDEEVGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAMPIDA---NDRATVLGLVKSCIGT 160 (557)
Q Consensus 84 ~~~~~~GDGttt~viL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~i~~---~~~~~l~~va~t~l~s 160 (557)
+|++++||||||+|+|+++||+++.+++++|+||..|++||+.|.+.++++|+++++|++. .+.+.|.++++|+++|
T Consensus 82 ~q~~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~l~~va~tsl~s 161 (522)
T TIGR02345 82 SQDSEVGDGTTSVVILAGELLKEAKPFIEEGVHPQLIIRCYREALMLAIEKLKEIAVTIDEVKGEQREVLEKCAATALNS 161 (522)
T ss_pred HHHHHhCCCchhHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCcCCcccccHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999999863 2457899999999999
Q ss_pred cccchhHHHHHHHHHHHHhhcccccCCCccccCcccceEEEEecCCCCCCcEEEEeEEEeccccCCC--CCcccccCceE
Q 036490 161 KFTSQFGDLLADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPG--KMRRKIVNPRI 238 (557)
Q Consensus 161 k~~~~~~~~ls~lv~~a~~~v~~~~~~g~~~~d~~~~I~I~~i~G~~~~~S~li~Givl~~~~~~~~--~~~~~~~n~~I 238 (557)
|+.+.++++|++++++|+.++++ + .+|++ +|.|+++.|++.++|++++|++|++++.+|. +|++.++||+|
T Consensus 162 K~~~~~~~~l~~l~~~A~~~v~~---~---~~~~~-~I~i~ki~Ggs~~ds~~v~Giv~~~~~~~~~~~~~~~~~~n~kI 234 (522)
T TIGR02345 162 KLIAHEKEFFSKMIVDAVLQLDI---D---DLDLK-LIGVKKVQGGSLQDSVLVNGVAFKKTFSYAGFEQQPKKFANPKI 234 (522)
T ss_pred ccccchHHHHHHHHHHHHHHHhh---c---cCChh-HheEEeecCCCHHhcceecceEEecccCccccccCCceeccceE
Confidence 99999999999999999999974 1 35554 6999999999999999999999999998772 46899999999
Q ss_pred EEEecccccccccccceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCCeeEecCChh
Q 036490 239 ILLDSPLEYKKGENQTNAELVKEEDWGVMLKIEEDYIENLCMQIVKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKT 318 (557)
Q Consensus 239 ll~~~~Le~~k~~~~~~~~i~~~~~l~~~~~~E~~~i~~~v~~i~~~~~~lIi~~~~i~~~al~~L~~~~I~~v~~v~~~ 318 (557)
++++++|++.+++.+..+.+.+.++++++.+.|+++++++++.+.+.|+++|+++++|++.+++||.+++|+++++++++
T Consensus 235 ll~~~~Le~~~~~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~~~~~i~d~~~~~L~~~~I~~~~~v~~~ 314 (522)
T TIGR02345 235 LLLNVELELKAEKDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVLSKLPIGDLATQYFADHNIFCAGRVSDE 314 (522)
T ss_pred EEEecCcccCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCccHHHHHHHHHCCcEEEecCCHH
Confidence 99999999999888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCccccCCCCCCCCCcCCccceEEEEEECceEEEEEEecCCCCeEEEEEccCCHHHHHHHHHHHHHHHHHH
Q 036490 319 DNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVA 398 (557)
Q Consensus 319 ~le~Ia~~tGa~iis~~~~l~~~~lG~~~~~v~~~~ig~~~~~~l~~~~~~~~~TIll~G~t~~~l~e~~~~l~dal~~~ 398 (557)
++++|+++|||++++++++++++.+|+ |+.|+++++|+++|++|++|+++++|||+|||+|+.+++|.+|+++||++++
T Consensus 315 dl~ria~~tga~ii~~~~~l~~~~LG~-~~~ie~~~~~~~r~~~~~g~~~~~~~TI~lrG~t~~~l~E~~r~i~DAl~~~ 393 (522)
T TIGR02345 315 DLKRVVKACGGSIQSTTSDLEADVLGT-CALFEERQIGSERYNYFTGCPHAKTCTIILRGGAEQFIEEAERSLHDAIMIV 393 (522)
T ss_pred HHHHHHHHhCCeEEcchhhCChhhccC-CceEEEEEECCeEEEEEEcCCCCceEEEEEECCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 9999999999999999999998999999999999999999999999999999
Q ss_pred HHHHhCCccccCCCchHHHHHHHHHHhhccCCCchhHHHHHHHHHhhhhHHHHHHhcCCCHHHHHHHHHHHhhCCCCceE
Q 036490 399 RNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWI 478 (557)
Q Consensus 399 ~~~l~~g~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~~~~~~~~~~ 478 (557)
+++++++++|||||++|++++.+|++++++.++++++++++|++||+.||++|++|||+|+.+++.+|+..|..++ .++
T Consensus 394 ~~~~~~~~vvpGGG~~e~~ls~~l~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~~-~~~ 472 (522)
T TIGR02345 394 RRALKARKIVAGGGAIEMELSKILREHSKKIDGKQQLIIEAFAKALEIIPRSLCENAGFDSIEILNKLRSRHAKGG-KWY 472 (522)
T ss_pred HHHhcCCCEEeCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC-Ccc
Confidence 9999998899999999999999999988888899999999999999999999999999999999999999997764 689
Q ss_pred EEeCCCCcccccccCccccchHHHHHHHHHHHHHHHHHHhhhhhhcC
Q 036490 479 GIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSG 525 (557)
Q Consensus 479 Gid~~~g~i~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~id~ii~~ 525 (557)
|||+.+|++.||++.|||||+.||+++|+.|+|+|++||+||++|..
T Consensus 473 G~d~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~ 519 (522)
T TIGR02345 473 GVDINTEDIGDNFENFVWEPLLVKKNALKAAFEAACTILSIDETIMN 519 (522)
T ss_pred ceeCCCCcccchhhcCceEcHHHHHHHHHHHHHHHHHHHhHHHHHhC
Confidence 99999999999999999999999999999999999999999999976
No 15
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=3.9e-102 Score=842.33 Aligned_cols=507 Identities=37% Similarity=0.583 Sum_probs=484.7
Q ss_pred ccccchHHHHHHHHHHHHHHHHhhhcCCcccccceeecCCCCEEEeccHHHHhhhccccChHHHHHHHHHHhhhhhcCCC
Q 036490 13 KRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDG 92 (557)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iT~DG~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDG 92 (557)
++..+.+++.+|+.||..++++|++||||+||+|||+++.|+++|||||+|||++|+++||+++|+++++++|++++|||
T Consensus 2 ~~~~~~~~~~~ni~a~~~i~~~v~ttlGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hp~a~ll~~~a~~q~~~~GDG 81 (515)
T cd03338 2 DKEKPADVRLSNIQAAKAVADAIRTSLGPRGMDKMIQTGKGEVIITNDGATILKQMSVLHPAAKMLVELSKAQDIEAGDG 81 (515)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeeeeCCCCCEEEECcHHHHHHhCcCcCHHHHHHHHHHHHHHhHhcCC
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhccccCCCCcHHHHHHHHHHhhhccccchhHHHHHH
Q 036490 93 TTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAMPIDANDRATVLGLVKSCIGTKFTSQFGDLLAD 172 (557)
Q Consensus 93 ttt~viL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~i~~~~~~~l~~va~t~l~sk~~~~~~~~ls~ 172 (557)
|||+++|+++|++++.+++++|+||..|++||+.|.+.++++|++++++++..+.+.|.++|+|+++||+.+.+++.+++
T Consensus 82 Ttt~vvLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~a~~v~~~~~~~l~~va~ts~~sK~~~~~~~~ls~ 161 (515)
T cd03338 82 TTSVVVLAGALLSACESLLKKGIHPTVISESFQIAAKKAVEILDSMSIPVDLNDRESLIKSATTSLNSKVVSQYSSLLAP 161 (515)
T ss_pred cchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHhccccchhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999998766788999999999999999999999999
Q ss_pred HHHHHHhhcccccCCCc-cccCcccceEEEEecCCCCCCcEEEEeEEEeccccCCCCCcccccCceEEEEeccccccccc
Q 036490 173 LAIDATTTVGVDLGQGL-REVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGE 251 (557)
Q Consensus 173 lv~~a~~~v~~~~~~g~-~~~d~~~~I~I~~i~G~~~~~S~li~Givl~~~~~~~~~~~~~~~n~~Ill~~~~Le~~k~~ 251 (557)
++++|+.+++.+ +. ..+|++ +|.|.+..|++.++|++++|++|++++.++..||+.++||++++++|+|++.+++
T Consensus 162 li~~A~~~v~~~---~~~~~~d~~-~i~i~~~~Ggs~~ds~lv~Giv~~k~~~~~~~~p~~i~n~ki~ll~~~le~~~~~ 237 (515)
T cd03338 162 IAVDAVLKVIDP---ATATNVDLK-DIRIVKKLGGTIEDTELVDGLVFTQKASKKAGGPTRIEKAKIGLIQFCLSPPKTD 237 (515)
T ss_pred HHHHHHHHhhcc---cccCcCCHH-HeEEEEecCCChhhceeeeeEEEeccccCcCCCCccccCCcEEEEeccccccccc
Confidence 999999999853 22 367776 6999999999999999999999999999972359999999999999999999999
Q ss_pred ccceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCC-----CHHHHHHHHHcCCeeEecCChhHHHHHHHH
Q 036490 252 NQTNAELVKEEDWGVMLKIEEDYIENLCMQIVKFKPDLVITEKGL-----SDLACHYLSKAGVSAIRRLRKTDNNRIAKA 326 (557)
Q Consensus 252 ~~~~~~i~~~~~l~~~~~~E~~~i~~~v~~i~~~~~~lIi~~~~i-----~~~al~~L~~~~I~~v~~v~~~~le~Ia~~ 326 (557)
....+.+++.++++.+.++|+++++++++++.+.|++||+++++| ++.+++||.++||++++++++++|+||+++
T Consensus 238 ~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~i~~~~v~~l~~~~l~~~~I~av~~~~~~~LerIa~~ 317 (515)
T cd03338 238 MDNNIVVNDYAQMDRILREERKYILNMCKKIKKSGCNVLLIQKSILRDAVSDLALHFLAKLKIMVVKDIEREEIEFICKT 317 (515)
T ss_pred cCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHHHCCceEEecCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999987 899999999999999999999999999999
Q ss_pred hCCccccCCCCCCCCCcCCccceEEEEEECceEEEEEEecCC-CCeEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHhCC
Q 036490 327 CGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKD-PKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNP 405 (557)
Q Consensus 327 tGa~iis~~~~l~~~~lG~~~~~v~~~~ig~~~~~~l~~~~~-~~~~TIll~G~t~~~l~e~~~~l~dal~~~~~~l~~g 405 (557)
|||+++++++++++..+|+ |+.|+++++|+++|.+|++|++ +++|||+|||+|+.+++|++|+++||++++++++++|
T Consensus 318 tGa~ii~sl~~l~~~~LG~-~~~v~~~~~g~~~~~~i~~~~~~~~~~TIllrG~t~~~l~e~~r~i~Dal~~~~~~~~~~ 396 (515)
T cd03338 318 IGCKPVASIDHFTEDKLGS-ADLVEEVSLGDGKIVKITGVKNPGKTVTILVRGSNKLVLDEAERSLHDALCVIRCLVKKR 396 (515)
T ss_pred HCCEEecccccCCHhhCCC-CceEEEEEECCeEEEEEEecCCCCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 9999999999999999999 9999999999999999999987 6999999999999999999999999999999999999
Q ss_pred ccccCCCchHHHHHHHHHHhhccCCCchhHHHHHHHHHhhhhHHHHHHhcCCCHHHHHHHHHHHhhCCCCceEEEeCCCC
Q 036490 406 KLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTG 485 (557)
Q Consensus 406 ~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~~~~~~~~~~Gid~~~g 485 (557)
++|||||++|++|+.+|++++.+.++++|+++++|++||+.||++|++|||+|+.+++.+|+..|..++ .++|+|+.+|
T Consensus 397 ~vvpGGG~~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~-~~~G~d~~~g 475 (515)
T cd03338 397 ALIPGGGAPEIEIALQLSEWARTLTGVEQYCVRAFADALEVIPYTLAENAGLNPISIVTELRNRHAQGE-KNAGINVRKG 475 (515)
T ss_pred CEEECCCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccC-CccceeccCC
Confidence 999999999999999999988888899999999999999999999999999999999999999998764 7899999999
Q ss_pred cccccccCccccchHHHHHHHHHHHHHHHHHHhhhhhhcC
Q 036490 486 AISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSG 525 (557)
Q Consensus 486 ~i~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~id~ii~~ 525 (557)
++.||++.|||||+.+|+++|+.|+|+|++||+||++|++
T Consensus 476 ~~~d~~~~gI~dp~~vk~~~l~~A~~~a~~iL~ID~ii~~ 515 (515)
T cd03338 476 AITNILEENVVQPLLVSTSAITLATETVRMILKIDDIVLA 515 (515)
T ss_pred CccchhhcCceecHHHHHHHHHHHHHHHHHHhccchhhcC
Confidence 9999999999999999999999999999999999999863
No 16
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=8.5e-102 Score=836.48 Aligned_cols=509 Identities=30% Similarity=0.496 Sum_probs=484.2
Q ss_pred ccccccccccchHHHHHHHHHHHHHHHHhhhcCCcccccceeecCC--CCEEEeccHHHHhhhccccChHHHHHHHHHHh
Q 036490 7 VLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDAS--GGIVVTNDGNAILRELDVAHPAAKSMIELSRT 84 (557)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~--g~~~iT~DG~tIl~~l~~~hP~a~ll~~~~~~ 84 (557)
+++++...+++++++..|+.|+..+++++++||||+||+|||+++. |+++|||||+|||++|+++||+++|++++|++
T Consensus 2 ~~~~~~~~~~~~~a~~~ni~a~~~i~~~vkttlGP~G~~KmI~~~~~~G~~~iTnDG~tIlk~l~i~hP~akll~~~a~~ 81 (519)
T TIGR02341 2 IFKDNAQEERGENARLSSFVGAIAIGDLVKSTLGPKGMDKILQSGSSESGIMVTNDGATILKSIGVDNPAAKVLVDMSKV 81 (519)
T ss_pred CccCCCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcCceEEeccCCCCCeEEeccHHHHHHHccCcChHHHHHHHHHHH
Confidence 3567777889999999999999999999999999999999999985 99999999999999999999999999999999
Q ss_pred hhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhccccCCCC---cHHHHHHHHHHhhhcc
Q 036490 85 QDEEVGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAMPIDAN---DRATVLGLVKSCIGTK 161 (557)
Q Consensus 85 ~~~~~GDGttt~viL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~i~~~---~~~~l~~va~t~l~sk 161 (557)
|++++||||||+|+|+++||+++.+|+++|+||..|++||+.|++.++++|++++++++.. +.+.|.++++|++++|
T Consensus 82 qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~L~~ia~t~l~sk 161 (519)
T TIGR02341 82 QDDEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRRATKAAQEALKKSSIDNGSDKTKFRDDLLNIARTTLSSK 161 (519)
T ss_pred hHhhhCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhcccccCcccccHHHHHHHHHHHhhhh
Confidence 9999999999999999999999999999999999999999999999999999999988532 3578999999999999
Q ss_pred ccchhHHHHHHHHHHHHhhcccccCCCccccCcccceEEEEecCCCCCCcEEEEeEEEeccccCCCCCcccccCceEEEE
Q 036490 162 FTSQFGDLLADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILL 241 (557)
Q Consensus 162 ~~~~~~~~ls~lv~~a~~~v~~~~~~g~~~~d~~~~I~I~~i~G~~~~~S~li~Givl~~~~~~~~~~~~~~~n~~Ill~ 241 (557)
+.+.+.+.|++++++|+..+.. + .|.+ +|++.+++|+++++|++++|+++++.+.+ .|++.++||+|+++
T Consensus 162 i~~~~~~~~s~l~~~av~~i~~----~---~~~~-~i~i~k~~G~s~~~s~l~~G~v~~~~~~~--~~~~~~~n~~Ili~ 231 (519)
T TIGR02341 162 ILSQHKDHFAQLAVDAVLRLKG----S---GNLD-AIQIIKKLGGSLNDSYLDEGFLLEKKIGV--NQPKRIENAKILIA 231 (519)
T ss_pred hhhhHHHHHHHHHHHHHHHhcc----C---CChh-heEEEEccCCCcccceEEeeEEEeccCCC--CCceeeccccEEEE
Confidence 9999999999999999999842 1 2443 49999999999999999999999999876 57999999999999
Q ss_pred ecccccccccc-cceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCCeeEecCChhHH
Q 036490 242 DSPLEYKKGEN-QTNAELVKEEDWGVMLKIEEDYIENLCMQIVKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDN 320 (557)
Q Consensus 242 ~~~Le~~k~~~-~~~~~i~~~~~l~~~~~~E~~~i~~~v~~i~~~~~~lIi~~~~i~~~al~~L~~~~I~~v~~v~~~~l 320 (557)
+++|++.+++. ++++.+++.+++..+...|+++++++++.|.+.|++++++++.|++.+++||.+++|++++++++.+|
T Consensus 232 ~~~Le~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~I~~~g~~~v~~~~~I~~~~~~~l~~~~I~~v~~~~~~~l 311 (519)
T TIGR02341 232 NTPMDTDKVKVFGSRVRVDSTAKVAELEAAEKEKMKEKVEKILKHNINCFINRQLIYNYPEQLFADAGVMAIEHADFEGI 311 (519)
T ss_pred ecCCCCCccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCcCCHHHHHHHHHCCcEEEecCCHHHH
Confidence 99999999886 78899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCccccCCCCCCCCCcCCccceEEEEEECceEEEEEEecCCCCeEEEEEccCCHHHHHHHHHHHHHHHHHHHH
Q 036490 321 NRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARN 400 (557)
Q Consensus 321 e~Ia~~tGa~iis~~~~l~~~~lG~~~~~v~~~~ig~~~~~~l~~~~~~~~~TIll~G~t~~~l~e~~~~l~dal~~~~~ 400 (557)
+||+++|||++++++++++++++|+ |+.|++..+|+++|++|++|+.++.|||+|||+|+.+++|.+|+++||++++++
T Consensus 312 ~~ia~~tGa~ii~~~~~~~~~~lG~-~~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~~l~E~er~i~Dal~~~~~ 390 (519)
T TIGR02341 312 ERLALVTGGEIVSTFDHPELVKLGS-CDLIEEIMIGEDKLLKFSGVKLGEACTIVLRGATQQILDESERSLHDALCVLSQ 390 (519)
T ss_pred HHHHHHhCCEEecccccCCcccccc-CceEEEEEECCEEEEEEEcCCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCccccCCCchHHHHHHHHHHhhccCCCchhHHHHHHHHHhhhhHHHHHHhcCCCHHHHHHHHHHHhhCCCCceEEE
Q 036490 401 IIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGI 480 (557)
Q Consensus 401 ~l~~g~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~~~~~~~~~~Gi 480 (557)
+++++++||||||+|++|+..|++++++.++++++++++|++||+.||++|++|||+|+.+++.+|+..|..+. .++|+
T Consensus 391 ~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~Ale~ip~~La~NaG~d~~~~l~~l~~~h~~~~-~~~Gi 469 (519)
T TIGR02341 391 TVKESRTVLGGGCSEMLMSKAVAVEAQKVPGKEALAVEAFARALRQLPTIIADNAGFDSAELVAQLRAAHYNGN-HTMGL 469 (519)
T ss_pred HHhCCCEEeCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC-Cccce
Confidence 99999999999999999999999988888899999999999999999999999999999999999999998775 68999
Q ss_pred eCCCCcccccccCccccchHHHHHHHHHHHHHHHHHHhhhhhhcCCc
Q 036490 481 DGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIK 527 (557)
Q Consensus 481 d~~~g~i~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~id~ii~~~~ 527 (557)
|+.+|++.||++.|||||+.||+++|+.|+|+|++||+||++|...|
T Consensus 470 d~~~g~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~ 516 (519)
T TIGR02341 470 DMEEGEIADMRKLGIIESYKVKRAVVSSAAEAAEVILRVDNIIKAAP 516 (519)
T ss_pred ecCCCcccchhhccceEcHHHHHHHHHHHHHHHHHHHhHHHHHhcCC
Confidence 99999999999999999999999999999999999999999998866
No 17
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.4e-101 Score=836.89 Aligned_cols=511 Identities=33% Similarity=0.534 Sum_probs=481.9
Q ss_pred ccccccccccchH-HHHHHHHHHHHHHHHhhhcCCcccccceeecCCCCEEEeccHHHHhhhccccChHHHHHHHHHHhh
Q 036490 7 VLKDSLKRESGTK-VHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQ 85 (557)
Q Consensus 7 ~~~~~~~~~~~~~-~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iT~DG~tIl~~l~~~hP~a~ll~~~~~~~ 85 (557)
+++++...++|.+ ++..|+.||..++++|++||||+||+|||+++.|+++|||||+||+++|+++||+++|++++|++|
T Consensus 5 ~~~~~~~~~~~~~~~~~~ni~a~~~l~~~vkttlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hP~akll~e~a~sq 84 (531)
T TIGR02346 5 LLKEGYRHMSGLEEAVIKNIEACKELSNITRTSLGPNGMNKMVINHLDKLFVTNDAATILRELEVQHPAAKLLVMASEMQ 84 (531)
T ss_pred cccCCcccccchHHHHHHHHHHHHHHHHHHhcccCCCcCCeEEEcCCCCEEEECcHHHHHHhccccCHHHHHHHHHHHHH
Confidence 4466656677754 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhccc-cC-CCCcHHHHHHHHHHhhhcccc
Q 036490 86 DEEVGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAM-PI-DANDRATVLGLVKSCIGTKFT 163 (557)
Q Consensus 86 ~~~~GDGttt~viL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~-~i-~~~~~~~l~~va~t~l~sk~~ 163 (557)
++++||||||+|||+++||+++.+++++|+||..|++||+.|++.++++|+++++ ++ +..+.+.+.++++|+++||+.
T Consensus 85 d~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~i~~tsl~sK~~ 164 (531)
T TIGR02346 85 ENEIGDGTNLVIVLAGELLDKAEELIRMGLHPSEIIKGYEQALKKAMEVLEELVVWEVEDVRNKKELIKALKASISSKQY 164 (531)
T ss_pred hhhhCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHhccccC
Confidence 9999999999999999999999999999999999999999999999999999886 66 334678899999999999998
Q ss_pred chhHHHHHHHHHHHHhhcccccCCCccccCcccceEEEEecCCCCCCcEEEEeEEEeccccCCCCCcccccCceEEEEec
Q 036490 164 SQFGDLLADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDS 243 (557)
Q Consensus 164 ~~~~~~ls~lv~~a~~~v~~~~~~g~~~~d~~~~I~I~~i~G~~~~~S~li~Givl~~~~~~~~~~~~~~~n~~Ill~~~ 243 (557)
+. +++|++++++|+.+++++ +...+|++ .|+|+++.|++.++|++++|++|+++.. .|++.++||||+++++
T Consensus 165 ~~-~~~ls~l~~~Ai~~v~~~---~~~~~~~~-~I~i~ki~G~s~~ds~li~Gi~~~~~~~---~~~k~i~n~kI~l~~~ 236 (531)
T TIGR02346 165 GN-EDFLAQLVAKACSTVMPK---NPENFNVD-NIRVSKIMGGSISNSEVLKGMVFNREAE---GSVKRVKNAKVAVFSC 236 (531)
T ss_pred ch-HHHHHHHHHHHHHHHhhc---CCCcCChh-HeeEEEecCCChhhceeEeeeEEeccCC---CCceeccCCCEEEEec
Confidence 77 999999999999999852 32356775 5999999999999999999999999843 4689999999999999
Q ss_pred ccccccccccceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCCeeEecCChhHHHHH
Q 036490 244 PLEYKKGENQTNAELVKEEDWGVMLKIEEDYIENLCMQIVKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRI 323 (557)
Q Consensus 244 ~Le~~k~~~~~~~~i~~~~~l~~~~~~E~~~i~~~v~~i~~~~~~lIi~~~~i~~~al~~L~~~~I~~v~~v~~~~le~I 323 (557)
++++.+++.+.++.+++++++..+...|+++++++++.+.+.|++||+++++|++.++++|.++||+++++++..+|+||
T Consensus 237 ~l~~~~~~~~~~~~~~~~~~l~~~~~~e~~~i~~~l~~i~~~g~~lvi~~~~I~d~~~~~l~~~~I~av~~~~~~~l~~I 316 (531)
T TIGR02346 237 PLDTATTETKGTVLIHNAEELLNYSKGEENQIEAYIKAIADSGVNVIVTGGSVGDMALHYCEKYNIMVLKIPSKFELRRL 316 (531)
T ss_pred CcCCCcccCceEEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCCcCHHHHHHHHHCCcEEEecCCHHHHHHH
Confidence 99999999899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCccccCCCCCCCCCcCCccceEEEEEECceEEEEEEecC-CCCeEEEEEccCCHHHHHHHHHHHHHHHHHHHHHH
Q 036490 324 AKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCK-DPKACTVLLRGASKDLLNEVERNLQDAMSVARNII 402 (557)
Q Consensus 324 a~~tGa~iis~~~~l~~~~lG~~~~~v~~~~ig~~~~~~l~~~~-~~~~~TIll~G~t~~~l~e~~~~l~dal~~~~~~l 402 (557)
+.+|||++++++++++++++|+ |+.|+++++|+++|.+|++|. .+.++||+|||+|+.+++|++|+++||++++++++
T Consensus 317 a~~tGa~ii~~l~~~~~~~LG~-a~~v~~~~ig~~~~~~i~~~~~~~~~~tI~lrG~t~~~l~E~er~i~DAl~~~k~ai 395 (531)
T TIGR02346 317 CKTVGATPLARLGAPQPEEIGY-VDSVYVSEIGGQKVTVFKQENGDSKISTIILRGSTKNLLDDIERAIDDGVNVIKALV 395 (531)
T ss_pred HHHHCCEEecccccCCHhHccc-cceEEEEEECCEEEEEEEccCCCCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999 999999999999999999987 58999999999999999999999999999999999
Q ss_pred hCCccccCCCchHHHHHHHHHHhhccCCCchhHHHHHHHHHhhhhHHHHHHhcCCCHHHHHHHHHHHhhCCCCceEEEeC
Q 036490 403 KNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDG 482 (557)
Q Consensus 403 ~~g~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~~~~~~~~~~Gid~ 482 (557)
++|++|||||++|++|+.+|+++++..++++++++++|++||+.||++|++|||+|+.+++.+|+..|..++ .++|||+
T Consensus 396 ~~~~vVpGGG~~e~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~-~~~Gid~ 474 (531)
T TIGR02346 396 KDNRFLPGAGATEIELALRLKKYANKLPGLDQYAIKKFAEAFEIIPRTLAENAGLNPNEVIPKLYAAHKKGN-TSSGIDI 474 (531)
T ss_pred cCCCEEECcCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-Cccceee
Confidence 999999999999999999999988888899999999999999999999999999999999999999997664 6899999
Q ss_pred CCCc--ccccccCccccchHHHHHHHHHHHHHHHHHHhhhhhhcCCc
Q 036490 483 NTGA--ISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIK 527 (557)
Q Consensus 483 ~~g~--i~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~id~ii~~~~ 527 (557)
.+|+ +.||++.|||||+.||+++|+.|+|+|++|||||++|...|
T Consensus 475 ~~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~ 521 (531)
T TIGR02346 475 EAESDGVKDASEAGIYDNLATKKWAIKLATEAAVTVLRVDQIIMAKP 521 (531)
T ss_pred eCCCccccChhhcCceEcHHHHHHHHHHHHHHHHHHhhhhHhhccCC
Confidence 9999 59999999999999999999999999999999999998754
No 18
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=3.4e-100 Score=818.18 Aligned_cols=479 Identities=31% Similarity=0.564 Sum_probs=456.1
Q ss_pred cccccccchHHHHHHHHHHHHHHHHhhhcCCcccccceeecCCCCEEEeccHHHHhhhccccChHHHHHHHHHHhhhhhc
Q 036490 10 DSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEV 89 (557)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iT~DG~tIl~~l~~~hP~a~ll~~~~~~~~~~~ 89 (557)
++....+|.+++..|+.||..+++++++||||+||+|||+++.|+++|||||+|||++|+++||+++|++++|++|++++
T Consensus 3 ~~~~~~~~~~~~~~ni~a~~~l~~~vkttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hP~a~l~~~~a~~qd~~~ 82 (484)
T cd03342 3 PKAEVLRRGQALAVNISAAKGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLSEMQIQHPTASMIARAATAQDDIT 82 (484)
T ss_pred CCcccccHHHHHHHHHHHHHHHHHHHhcCcCCCCCceEEECCCCCEEEeccHHHHHHhccCcCHHHHHHHHHHHHhhhHh
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhccccCCC-CcHHHHHHHHHHhhhccccchhHH
Q 036490 90 GDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAMPIDA-NDRATVLGLVKSCIGTKFTSQFGD 168 (557)
Q Consensus 90 GDGttt~viL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~i~~-~~~~~l~~va~t~l~sk~~~~~~~ 168 (557)
||||||+++|+++|++++.+++++|+||..|++||+.|.+.++++|++++.+++. .+.+.+.++|++++++|+.+.+.+
T Consensus 83 GDGTTt~vvLa~~Ll~~a~~li~~gi~P~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~~l~~va~ts~~sk~~~~~~~ 162 (484)
T cd03342 83 GDGTTSNVLLIGELLKQAERYIQEGVHPRIITEGFELAKNKALKFLESFKVPVEIDTDRELLLSVARTSLRTKLHADLAD 162 (484)
T ss_pred CCChhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHhCcccchhHHH
Confidence 9999999999999999999999999999999999999999999999999998864 478899999999999999999999
Q ss_pred HHHHHHHHHHhhcccccCCCccccCcccceEEEEecCCCCCCcEEEEeEEEeccccCCCCCcccccCceEEEEecccccc
Q 036490 169 LLADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYK 248 (557)
Q Consensus 169 ~ls~lv~~a~~~v~~~~~~g~~~~d~~~~I~I~~i~G~~~~~S~li~Givl~~~~~~~~~~~~~~~n~~Ill~~~~Le~~ 248 (557)
.|++++++|+..+++ ++ ..+|++ +|+|+++.|++.++|++++|++|++++.++ .|+++++||+|++++++|++.
T Consensus 163 ~l~~l~~~A~~~v~~---~~-~~~~~~-~I~i~ki~ggs~~ds~~i~G~~~~~~~~~~-~m~~~~~n~~Ill~~~~le~~ 236 (484)
T cd03342 163 QLTEIVVDAVLAIYK---PD-EPIDLH-MVEIMQMQHKSDSDTKLIRGLVLDHGARHP-DMPKRVENAYILTCNVSLEYE 236 (484)
T ss_pred HHHHHHHHHHHHHhh---cC-CccChh-HeEEEEecCCChhhceEEeeEEEecCCCCC-CCCccccCceEEEEeCCCCCC
Confidence 999999999999975 23 257775 699999999999999999999999999998 899999999999999999998
Q ss_pred cccccceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCCeeEecCChhHHHHHHHHhC
Q 036490 249 KGENQTNAELVKEEDWGVMLKIEEDYIENLCMQIVKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACG 328 (557)
Q Consensus 249 k~~~~~~~~i~~~~~l~~~~~~E~~~i~~~v~~i~~~~~~lIi~~~~i~~~al~~L~~~~I~~v~~v~~~~le~Ia~~tG 328 (557)
+++...++.+. ||+++++|++.++++|.++||++++++++++|+||+++||
T Consensus 237 ~~~~~~~~~~~-----------------------------lvi~~~~I~~~al~~l~~~~I~av~~~~~~~l~~ia~~tG 287 (484)
T cd03342 237 KTEVNSGFFYS-----------------------------VVINQKGIDPPSLDMLAKEGILALRRAKRRNMERLTLACG 287 (484)
T ss_pred ccccCcEEEEE-----------------------------EEEeCCCccHHHHHHHHHCCCeEEEeCCHHHHHHHHHHhC
Confidence 88776654432 9999999999999999999999999999999999999999
Q ss_pred CccccCCCCCCCCCcCCccceEEEEEECceEEEEEEecCCCCeEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHhCCccc
Q 036490 329 AVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLV 408 (557)
Q Consensus 329 a~iis~~~~l~~~~lG~~~~~v~~~~ig~~~~~~l~~~~~~~~~TIll~G~t~~~l~e~~~~l~dal~~~~~~l~~g~vv 408 (557)
|++++++++++++++|+ |+.++++.+|+++|++|++|..++.|||+|||+|+.+++|+||+++||++++++++++|++|
T Consensus 288 a~ii~~l~~~~~~~LG~-~~~v~~~~ig~~~~~~i~~~~~~~~~tI~lrg~t~~~l~E~er~l~DAl~~vk~~~~~~~~v 366 (484)
T cd03342 288 GVAMNSVDDLSPECLGY-AGLVYERTLGEEKYTFIEGVKNPKSCTILIKGPNDHTITQIKDAIRDGLRAVKNAIEDKCVV 366 (484)
T ss_pred CEEecccccCChhhCcc-cceEEEEEECCeEEEEEECCCCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCcEE
Confidence 99999999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCchHHHHHHHHHHhhccCCCchhHHHHHHHHHhhhhHHHHHHhcCCCHHHHHHHHHHHhhCCCCceEEEeCCCCccc
Q 036490 409 PGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAIS 488 (557)
Q Consensus 409 pGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~~~~~~~~~~Gid~~~g~i~ 488 (557)
||||++|++|+.+|++++...++++|+++++|++||+.||++|++|||+|+.+++.+|++.|..+. .++|||+.+|++.
T Consensus 367 pGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~-~~~Gid~~~g~~~ 445 (484)
T cd03342 367 PGAGAFEVALYAHLKEFKKSVKGKAKLGVQAFADALLVIPKTLAENSGLDVQETLVKLQDEYAEGG-QVGGVDLDTGEPM 445 (484)
T ss_pred eCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccC-CceeeeCCCCccc
Confidence 999999999999999998888999999999999999999999999999999999999998887765 6899999999999
Q ss_pred ccccCccccchHHHHHHHHHHHHHHHHHHhhhhhhcC
Q 036490 489 DMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSG 525 (557)
Q Consensus 489 d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~id~ii~~ 525 (557)
||++.|||||+.+|+++|+.|+|+|++|||||++|..
T Consensus 446 d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~ID~ii~~ 482 (484)
T cd03342 446 DPESEGIWDNYSVKRQILHSATVIASQLLLVDEIIRA 482 (484)
T ss_pred chhhcCcEEcHHHHHHHHHHHHHHHHHHhhhhHhhhc
Confidence 9999999999999999999999999999999999875
No 19
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=3.1e-100 Score=818.52 Aligned_cols=476 Identities=74% Similarity=1.134 Sum_probs=452.9
Q ss_pred cccccccccccchHHHHHHHHHHHHHHHHhhhcCCcccccceeecCCCCEEEeccHHHHhhhccccChHHHHHHHHHHhh
Q 036490 6 LVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQ 85 (557)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iT~DG~tIl~~l~~~hP~a~ll~~~~~~~ 85 (557)
.+++++....+|++++..|+.||..+++++++||||+||+|||+++.|+++|||||+|||++|+++||+++|+++++++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~ni~a~~~l~~~~~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~q 82 (480)
T cd03337 3 LVLNQNTKRESGRKAQLGNIQAAKTVADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVAHPAAKSMIELSRTQ 82 (480)
T ss_pred eeccCCCccccHHHHHHHHHHHHHHHHHHHhccCCCCcCceEeEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHhH
Confidence 35577777899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhccccCCCCcHHHHHHHHHHhhhccccch
Q 036490 86 DEEVGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAMPIDANDRATVLGLVKSCIGTKFTSQ 165 (557)
Q Consensus 86 ~~~~GDGttt~viL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~i~~~~~~~l~~va~t~l~sk~~~~ 165 (557)
++++||||||+++|+++||+++.+++++|+||..|++||+.|++.++++|++++++++..+.+.|.++++|+++||+.++
T Consensus 83 ~~~~GDGTtt~vvL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~i~~t~l~sK~~~~ 162 (480)
T cd03337 83 DEEVGDGTTSVIILAGEILAVAEPFLERGIHPTVIIKAYRKALEDALKILEEISIPVDVNDRAQMLKIIKSCIGTKFVSR 162 (480)
T ss_pred HHHhCCCcchhHhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHhccCcchh
Confidence 99999999999999999999999999999999999999999999999999999999987788899999999999999999
Q ss_pred hHHHHHHHHHHHHhhcccccCCCc-cccCcccceEEEEecCCCCCCcEEEEeEEEeccccCCCCCcccccCceEEEEecc
Q 036490 166 FGDLLADLAIDATTTVGVDLGQGL-REVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSP 244 (557)
Q Consensus 166 ~~~~ls~lv~~a~~~v~~~~~~g~-~~~d~~~~I~I~~i~G~~~~~S~li~Givl~~~~~~~~~~~~~~~n~~Ill~~~~ 244 (557)
|.+.+++++++|+..++++. .+. .++|++++|+|++++|++.++|++++|++|++++.++ +|+++++||+|++++++
T Consensus 163 ~~~~ls~lv~~Ai~~v~~~~-~~~~~~id~~~~I~i~ki~Ggs~~ds~li~Gvvi~k~~~~~-~m~~~~~n~kIlll~~~ 240 (480)
T cd03337 163 WSDLMCNLALDAVKTVAVEE-NGRKKEIDIKRYAKVEKIPGGEIEDSRVLDGVMLNKDVTHP-KMRRRIENPRIVLLDCP 240 (480)
T ss_pred HHHHHHHHHHHHHHhhcccc-CCCCCcCChhhceEEEEecCCCHHhcccccceEEeccCCCC-CCCcEecCCCEEEEecC
Confidence 99999999999999998632 122 3577776799999999999999999999999999998 99999999999999999
Q ss_pred cccccccccceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCCeeEecCChhHHHHHH
Q 036490 245 LEYKKGENQTNAELVKEEDWGVMLKIEEDYIENLCMQIVKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIA 324 (557)
Q Consensus 245 Le~~k~~~~~~~~i~~~~~l~~~~~~E~~~i~~~v~~i~~~~~~lIi~~~~i~~~al~~L~~~~I~~v~~v~~~~le~Ia 324 (557)
|++ ||+++++|++.++++|.++||++++++++++|+||+
T Consensus 241 Le~-----------------------------------------lvi~~k~I~d~al~~L~~~~I~~v~~v~~~~L~rIa 279 (480)
T cd03337 241 LEY-----------------------------------------LVITEKGVSDLAQHYLVKAGITALRRVRKTDNNRIA 279 (480)
T ss_pred cce-----------------------------------------EEEeCCCccHHHHHHHHHCCcEEEEeCCHHHHHHHH
Confidence 885 999999999999999999999999999999999999
Q ss_pred HHhCCccccCCCCCCCCCcCCccceEEEEEECceEEEEEEecCCCCeEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHhC
Q 036490 325 KACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKN 404 (557)
Q Consensus 325 ~~tGa~iis~~~~l~~~~lG~~~~~v~~~~ig~~~~~~l~~~~~~~~~TIll~G~t~~~l~e~~~~l~dal~~~~~~l~~ 404 (557)
++|||++++++++++++.+|+.|+.++++++++++|++|++|++++.|||+|||+|+.+++|.||+++||++++++++++
T Consensus 280 ~~tGa~ii~~~~~l~~~~LG~~~~~~~~~~~~~~~~~~i~~~~~~~~~TIllrG~t~~~l~e~er~l~DAl~v~~~~~~~ 359 (480)
T cd03337 280 RACGATIVNRPEELTESDVGTGAGLFEVKKIGDEYFTFITECKDPKACTILLRGASKDVLNEVERNLQDAMAVARNIILN 359 (480)
T ss_pred HHHCCEEecchhhCCHHHcCCcccEEEEEEeCCeEEEEEEcCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999856777888889999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCchHHHHHHHHHHhhccCCCchhHHHHHHHHHhhhhHHHHHHhcCCCHHHHHHHHHHHhhCCCCceEEEeCCC
Q 036490 405 PKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNT 484 (557)
Q Consensus 405 g~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~~~~~~~~~~Gid~~~ 484 (557)
+++|||||++|++|+.+|++++++.++++|+++++|++||+.||++|++|||+|+.+++.+|++.|..++..++|+|+.+
T Consensus 360 ~~~vpGGGa~E~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~ 439 (480)
T cd03337 360 PKLVPGGGATEMAVSHALSEKAKSIEGVEQWPYKAVASALEVIPRTLAQNCGANVIRTLTELRAKHAQGENSTWGIDGET 439 (480)
T ss_pred CCEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCCeECeeccC
Confidence 99999999999999999999888888999999999999999999999999999999999999999987733689999999
Q ss_pred CcccccccCccccchHHHHHHHHHHHHHHHHHHhhhhhhc
Q 036490 485 GAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVS 524 (557)
Q Consensus 485 g~i~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~id~ii~ 524 (557)
|++.||++.|||||+.+|+++|+.|+|+|++|||||++|.
T Consensus 440 g~i~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~id~ii~ 479 (480)
T cd03337 440 GDIVDMKELGIWDPLAVKAQTYKTAIEAACMLLRIDDIVS 479 (480)
T ss_pred CCcccchhccCeEcHHHHHHHHHHHHHHHHHHhhhhheec
Confidence 9999999999999999999999999999999999999984
No 20
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-98 Score=725.52 Aligned_cols=508 Identities=35% Similarity=0.570 Sum_probs=486.0
Q ss_pred cccccchHHHHHHHHHHHHHHHHhhhcCCcccccceeecCCCCEEEeccHHHHhhhccccChHHHHHHHHHHhhhhhcCC
Q 036490 12 LKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGD 91 (557)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iT~DG~tIl~~l~~~hP~a~ll~~~~~~~~~~~GD 91 (557)
.+.++.+++|.+||+|++++++.+++||||+||+|||++..|+++|||||+|||+.|++-||+++||++.+..||.++||
T Consensus 19 ~d~ekp~~vR~sni~Aa~avadairTSLGPkGmDKMIq~~~gev~iTNDGaTILk~m~vlhP~akmLvelS~aQD~eaGD 98 (534)
T KOG0358|consen 19 KDKEKPEQVRFSNIQAARAVADAIRTSLGPKGMDKMIQTGKGEVIITNDGATILKQMNVLHPAAKMLVELSAAQDSEAGD 98 (534)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHhccCccchhhHhhcCCCcEEEecChHHHHHHHhhhChHHHHHHHhhhhccccccC
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhccccCCCCcHHHHHHHHHHhhhccccchhHHHHH
Q 036490 92 GTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAMPIDANDRATVLGLVKSCIGTKFTSQFGDLLA 171 (557)
Q Consensus 92 Gttt~viL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~i~~~~~~~l~~va~t~l~sk~~~~~~~~ls 171 (557)
||||+|+|+++||+.+.+|+++|+||+.|.+.|+.|.+..+++|.+++.|++.+|++.|.+-+.|+|+||+.+++...++
T Consensus 99 GTTsVVilaGaLL~~~~~LL~kgiHPtvIsdsfq~a~~~~v~il~~m~~~velsdre~Li~~atTsLnSKvvSq~s~lla 178 (534)
T KOG0358|consen 99 GTTSVVILAGALLEAAEKLLQKGIHPTVISDSFQSAAKKAVDILDEMSVPVELSDRESLIKSATTSLNSKVVSQYSSLLA 178 (534)
T ss_pred CceEEEEehhhHHHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHHhcCCCcccCcHHHHHHHHHhHhhHHHHHhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccccCCCccccCcccceEEEEecCCCCCCcEEEEeEEEeccccCCCCCcccccCceEEEEeccccccccc
Q 036490 172 DLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGE 251 (557)
Q Consensus 172 ~lv~~a~~~v~~~~~~g~~~~d~~~~I~I~~i~G~~~~~S~li~Givl~~~~~~~~~~~~~~~n~~Ill~~~~Le~~k~~ 251 (557)
.+.++|+.++..+ ....++|++ +|+|.+..||.++|+++++|++|++..... ..|.++++++|-++.|.|+.+|++
T Consensus 179 pmAVdAV~kv~dp--~~~~nvdlk-dIkivkklGgtvdDte~i~glvl~~~~~~~-~gptriekAkIglIQF~iS~PKtd 254 (534)
T KOG0358|consen 179 PMAVDAVLKVIDP--ENATNVDLK-DIKIVKKLGGTVDDTELIKGLVLTQKASKS-AGPTRIEKAKIGLIQFQISPPKTD 254 (534)
T ss_pred hHHHHHHHhccCc--ccccccchh-hhhhHHhhCCccchhhhhcceEEeeecccC-CCcchhhhceeeEEEEEecCCCCC
Confidence 9999999998532 233567877 599999999999999999999999987776 579999999999999999999999
Q ss_pred ccceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCC-----CHHHHHHHHHcCCeeEecCChhHHHHHHHH
Q 036490 252 NQTNAELVKEEDWGVMLKIEEDYIENLCMQIVKFKPDLVITEKGL-----SDLACHYLSKAGVSAIRRLRKTDNNRIAKA 326 (557)
Q Consensus 252 ~~~~~~i~~~~~l~~~~~~E~~~i~~~v~~i~~~~~~lIi~~~~i-----~~~al~~L~~~~I~~v~~v~~~~le~Ia~~ 326 (557)
...++.++++.+++++++.|++|+.+++++|.+.|+||+++|++| ++.+++||.+.+|+++..+.++++|.+++.
T Consensus 255 men~iiv~DyaqMdrilkeER~YiL~mcKkIKk~gcnvLliQKSILRdavsDLAlHfL~klkimvikdieRediefick~ 334 (534)
T KOG0358|consen 255 MENQIIVNDYAQMDRILKEERQYILNMCKKIKKAGCNVLLIQKSILRDAVSDLALHFLAKLKIMVIKDIEREDIEFICKT 334 (534)
T ss_pred cccceEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeHHHHHHHHHHHHHHHHHhCcEEEEccccHhhHHHHHhh
Confidence 999999999999999999999999999999999999999999976 888999999999999999999999999999
Q ss_pred hCCccccCCCCCCCCCcCCccceEEEEE-ECceEEEEEEecCC-CCeEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHhC
Q 036490 327 CGAVIVNRPDELQESDVGTGAGLFEVKK-IGDEFFAFIVDCKD-PKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKN 404 (557)
Q Consensus 327 tGa~iis~~~~l~~~~lG~~~~~v~~~~-ig~~~~~~l~~~~~-~~~~TIll~G~t~~~l~e~~~~l~dal~~~~~~l~~ 404 (557)
+|+.++.+++.+++..+|+ ++.+++.. .|+.+++.+.|+.+ ++++||++||.+...++|.+|++|||||++|++++.
T Consensus 335 l~c~Pia~id~f~~d~Lg~-adlveE~~~~G~gkivk~tg~~n~g~tvsil~RGsn~lvleEaeRSlhDALCVirCLvk~ 413 (534)
T KOG0358|consen 335 LGCKPIADIDHFTADKLGS-ADLVEETDSSGEGKIVKITGIQNAGRTVSILLRGSNKLVLEEAERSLHDALCVIRCLVKK 413 (534)
T ss_pred cCCeecchhhhcChhhcCc-chhhhhcccCCCccEEEEEEeecCCCceEEEEecCchhhhHHHhhhhhhhhHHHHhhhhc
Confidence 9999999999999999999 99999874 46669999999977 889999999999999999999999999999999999
Q ss_pred CccccCCCchHHHHHHHHHHhhccCCCchhHHHHHHHHHhhhhHHHHHHhcCCCHHHHHHHHHHHhhCCCCceEEEeCCC
Q 036490 405 PKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNT 484 (557)
Q Consensus 405 g~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~~~~~~~~~~Gid~~~ 484 (557)
..++||||+.|+.++..|..++....+.+.+++++||+|||.||.+|++|||++|..++.+||+.|.+|+ .+.|+++..
T Consensus 414 r~li~GGGapEieia~~L~~~a~t~eG~~~yc~rafA~AlEvIP~tLAeNAGLnpI~~VtELRn~haqge-~~aGInVRk 492 (534)
T KOG0358|consen 414 RALIAGGGAPEIEIALRLSALARTLEGVEAYCWRAFADALEVIPYTLAENAGLNPIATVTELRNRHAQGE-KNAGINVRK 492 (534)
T ss_pred cceecCCCCcchHHHHHHHHHHhhhccchhHHHHHHHHHHhcccHhHHhhCCCChhhHHHHHHHHHhcCC-cccceeeec
Confidence 9999999999999999999999999999999999999999999999999999999999999999999986 899999999
Q ss_pred CcccccccCccccchHHHHHHHHHHHHHHHHHHhhhhhhcC
Q 036490 485 GAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSG 525 (557)
Q Consensus 485 g~i~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~id~ii~~ 525 (557)
|.+.||.+..|+.|+.|-.++++.|+|++.++|+||+|+..
T Consensus 493 g~~tni~ee~VvQPllVs~SaitlA~Etvr~ILKIDDIv~a 533 (534)
T KOG0358|consen 493 GGITNILEENVVQPLLVSISAITLATETVRSILKIDDIVNA 533 (534)
T ss_pred ccchhhHHHhcccceeeeHHHHHHHHHHHHHHhhhhhhccc
Confidence 99999999999999999999999999999999999999854
No 21
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-97 Score=715.43 Aligned_cols=518 Identities=30% Similarity=0.499 Sum_probs=491.8
Q ss_pred CCccccccccccccchHHHHHHHHHHHHHHHHhhhcCCcccccceeecC--CCCEEEeccHHHHhhhccccChHHHHHHH
Q 036490 3 SPVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDA--SGGIVVTNDGNAILRELDVAHPAAKSMIE 80 (557)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~--~g~~~iT~DG~tIl~~l~~~hP~a~ll~~ 80 (557)
+|+.+++++..+++|+.+|.+.|.++..+.++|||||||+||+|+++.. .|.+.+||||+|||+++.+.+|+||+|++
T Consensus 2 ~p~~i~~~~~~eErge~ArlssfvGaiaigDlvKsTLGPKGMdKiL~s~~~~~~v~VTNDGAtILksi~vDnpaAkvLv~ 81 (527)
T KOG0363|consen 2 NPVQIFKDGATEERGENARLSSFVGAIAIGDLVKSTLGPKGMDKILQSTGRAGTVMVTNDGATILKSIGVDNPAAKVLVD 81 (527)
T ss_pred ChhhhhcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcchHHHHHhccCCCCceEEecchHHHHHhcCCCCchhhheec
Confidence 4788999999999999999999999999999999999999999999974 46799999999999999999999999999
Q ss_pred HHHhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhccccCCC---CcHHHHHHHHHHh
Q 036490 81 LSRTQDEEVGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAMPIDA---NDRATVLGLVKSC 157 (557)
Q Consensus 81 ~~~~~~~~~GDGttt~viL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~i~~---~~~~~l~~va~t~ 157 (557)
+++-||.++||||||+++|+++||++|.+|+.+.+||+.|++||+.|.+.+.+.|.+.++.... .-+++|.++++|.
T Consensus 82 ~S~vQD~EvGDGTTSV~vlaaeLlreAeklv~~kiHPq~Ii~GyR~A~~~a~eaL~~~s~dns~~~~kfr~DLl~iarTT 161 (527)
T KOG0363|consen 82 ISKVQDDEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRMATAAALEALTKSSIDNSSDKEKFREDLLKIARTT 161 (527)
T ss_pred cccccccccCCCceehHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999887765321 1278899999999
Q ss_pred hhccccchhHHHHHHHHHHHHhhcccccCCCccccCcccceEEEEecCCCCCCcEEEEeEEEeccccCCCCCcccccCce
Q 036490 158 IGTKFTSQFGDLLADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPR 237 (557)
Q Consensus 158 l~sk~~~~~~~~ls~lv~~a~~~v~~~~~~g~~~~d~~~~I~I~~i~G~~~~~S~li~Givl~~~~~~~~~~~~~~~n~~ 237 (557)
|+||+.++..++|++++++|+.++. |..+++ .|+|+|..||.++||++-+|+++++.+-. +.|++++|++
T Consensus 162 L~SKiLsq~kehFaelavdAV~rLk-----Gs~nL~---~IqIIK~~Gg~l~dSfLDeGFlL~K~igv--~qpkriena~ 231 (527)
T KOG0363|consen 162 LSSKILSQDKEHFAELAVDAVLRLK-----GSTNLE---AIQIIKKLGGKLEDSFLDEGFLLDKKIGV--NQPKRIENAK 231 (527)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHhc-----CCCCcc---ceeeehhcCCccccccccccceeccccCC--CCcccccccc
Confidence 9999999999999999999999985 444444 59999999999999999999999998776 6899999999
Q ss_pred EEEEeccccccccc-ccceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCCeeEecCC
Q 036490 238 IILLDSPLEYKKGE-NQTNAELVKEEDWGVMLKIEEDYIENLCMQIVKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLR 316 (557)
Q Consensus 238 Ill~~~~Le~~k~~-~~~~~~i~~~~~l~~~~~~E~~~i~~~v~~i~~~~~~lIi~~~~i~~~al~~L~~~~I~~v~~v~ 316 (557)
||+.|.+++..|-+ ..+.+.+.+...+.++...|++.++.++++|.++|+|+.+...-|.++-.++|...||+++...+
T Consensus 232 iLIANT~mDtDKvKvfGarvrVds~~klaelE~AEkeKmK~KV~kI~~hgiN~FiNRQLiYnyPeqLf~dagi~aIEHAD 311 (527)
T KOG0363|consen 232 ILIANTPMDTDKVKVFGARVRVDSTAKLAELEKAEKEKMKEKVEKILKHGINVFINRQLIYNYPEQLFADAGIMAIEHAD 311 (527)
T ss_pred eEEecCCCcccceeeecceEeecchhHHHHHHHHHHHHHHHHHHHHHhcCCcEEeehhHhhcCHHHHHhhcCcceeeccc
Confidence 99999999988765 45789999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhCCccccCCCCCCCCCcCCccceEEEEEECceEEEEEEecCCCCeEEEEEccCCHHHHHHHHHHHHHHHH
Q 036490 317 KTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMS 396 (557)
Q Consensus 317 ~~~le~Ia~~tGa~iis~~~~l~~~~lG~~~~~v~~~~ig~~~~~~l~~~~~~~~~TIll~G~t~~~l~e~~~~l~dal~ 396 (557)
.+-+||++.+||+.|++++++++..++|+ |+.+++..+|++++++|+||..+..|||+|||.|++.++|.+|++|||||
T Consensus 312 FdGiERLalvtGGeI~STFd~p~~~klG~-C~~IeeimiGed~li~FSGv~~GeActIVlrGat~q~LDEaeRslHDALc 390 (527)
T KOG0363|consen 312 FDGIERLALVTGGEIVSTFDNPELVKLGE-CDLIEEIMIGEDKLIKFSGVKLGEACTIVLRGATQQILDEAERSLHDALC 390 (527)
T ss_pred chhHHHHhhcccceeeeccCCcchhcccc-chhhHHHhcCccceeeecccccccceEEEEecccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCccccCCCchHHHHHHHHHHhhccCCCchhHHHHHHHHHhhhhHHHHHHhcCCCHHHHHHHHHHHhhCCCCc
Q 036490 397 VARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENA 476 (557)
Q Consensus 397 ~~~~~l~~g~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~~~~~~~~ 476 (557)
++...+++.+++.||||.||.++..+.+++...++++..++++|++||..+|.+|+.|+|+|+.+++++||+.|.+|. .
T Consensus 391 VLaqtv~esrvv~GgG~sEm~Ma~av~~~A~~~pGkea~AieAfarAL~qlPtiiaDNaG~dsaelva~Lra~h~~g~-~ 469 (527)
T KOG0363|consen 391 VLAQTVKESRVVLGGGCSEMLMAKAVDKEAQETPGKEALAIEAFARALRQLPTIIADNAGYDSAELVAQLRAEHYNGR-T 469 (527)
T ss_pred HHHHHhccceeeecCCcHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHhcchhhhccCCCCHHHHHHHHHHHhhcCC-c
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999887 8
Q ss_pred eEEEeCCCCcccccccCccccchHHHHHHHHHHHHHHHHHHhhhhhhcCCccCCCC
Q 036490 477 WIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAP 532 (557)
Q Consensus 477 ~~Gid~~~g~i~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~id~ii~~~~~~~~~ 532 (557)
.+|+|+.+|.+.||.+.||+|++.+|.+.+.+|.|+|.+|||+|.||.+.|.+..+
T Consensus 470 t~Gld~~~G~i~dm~~~Gi~es~~vK~~vv~sasEaae~ilrvD~Iik~aPR~r~~ 525 (527)
T KOG0363|consen 470 TMGLDVRNGEIGDMRELGIVESLKVKQAVVSSASEAAEMILRVDNIIKAAPRERER 525 (527)
T ss_pred ccccccccCchhhHHHhhhHHHHHHHHHHHhhhHHHHHHHHhhhhhhhcCCccccc
Confidence 99999999999999999999999999999999999999999999999998876644
No 22
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=4.6e-95 Score=776.96 Aligned_cols=463 Identities=33% Similarity=0.558 Sum_probs=436.7
Q ss_pred ccchHHHHHHHHHHHHHHHHhhhcCCcccccceeecCCCCEEEeccHHHHhhhccccChHHHHHHHHHHhhhhhcCCChh
Q 036490 15 ESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTT 94 (557)
Q Consensus 15 ~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iT~DG~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGtt 94 (557)
..+++++..|+.||..|++++++||||+||+|||+++.|+++|||||+|||++|+++||+++|+++++++|++++|||||
T Consensus 4 ~~~~~~~~~ni~a~~~l~~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~~~~~~GDGTT 83 (472)
T cd03341 4 SGLEEAVLRNIEACKELSQITRTSYGPNGMNKMVINHLEKLFVTSDAATILRELEVQHPAAKLLVMASQMQEEEIGDGTN 83 (472)
T ss_pred chHHHHHHHHHHHHHHHHHHHhcCcCCCCCceEEEcCCCCEEEeCcHHHHHHhccccCHHHHHHHHHHHHHhhhhCCChh
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhcccc-C-CCCcHHHHHHHHHHhhhccccchhHHHHHH
Q 036490 95 SVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAMP-I-DANDRATVLGLVKSCIGTKFTSQFGDLLAD 172 (557)
Q Consensus 95 t~viL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~-i-~~~~~~~l~~va~t~l~sk~~~~~~~~ls~ 172 (557)
|+++|+++||+++.+++++|+||..|++||+.|++.++++|++++++ + +..+.+.+.++++|+++||+.+ +++++++
T Consensus 84 t~vvL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~-~~~~l~~ 162 (472)
T cd03341 84 LVVVLAGELLEKAEELLRMGLHPSEIIEGYEKALKKALEILEELVVYKIEDLRNKEEVSKALKTAIASKQYG-NEDFLSP 162 (472)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccccCCccCHHHHHHHHHHHhcccccc-hHHHHHH
Confidence 99999999999999999999999999999999999999999999876 4 4346788999999999999876 7999999
Q ss_pred HHHHHHhhcccccCCCccccCcccceEEEEecCCCCCCcEEEEeEEEeccccCCCCCcccccCceEEEEecccccccccc
Q 036490 173 LAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGEN 252 (557)
Q Consensus 173 lv~~a~~~v~~~~~~g~~~~d~~~~I~I~~i~G~~~~~S~li~Givl~~~~~~~~~~~~~~~n~~Ill~~~~Le~~k~~~ 252 (557)
++++|+.+++++. .| .+|++ +|+|++++|++.+||++++|++|++.+. .++++++||+|++++++|++
T Consensus 163 l~~~a~~~~~~~~-~~--~~~~~-~i~i~ki~Gg~~~ds~lv~Giv~~~~~~---~~~~~~~n~~Ili~~~~Le~----- 230 (472)
T cd03341 163 LVAEACISVLPEN-IG--NFNVD-NIRVVKILGGSLEDSKVVRGMVFKREPE---GSVKRVKKAKVAVFSCPFDI----- 230 (472)
T ss_pred HHHHHHHHHhhcc-CC--cCChh-HeEEEEecCCCcccceEEeeEEEccccC---CCceeccCCcEEEEeccccC-----
Confidence 9999999997521 13 46765 5999999999999999999999987654 34588999999999999985
Q ss_pred cceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCCeeEecCChhHHHHHHHHhCCccc
Q 036490 253 QTNAELVKEEDWGVMLKIEEDYIENLCMQIVKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIV 332 (557)
Q Consensus 253 ~~~~~i~~~~~l~~~~~~E~~~i~~~v~~i~~~~~~lIi~~~~i~~~al~~L~~~~I~~v~~v~~~~le~Ia~~tGa~ii 332 (557)
|++||+++++|++.+++||.++||++++++++++|+||+++|||+++
T Consensus 231 ---------------------------------g~~lvi~~~~I~d~al~~l~~~~I~av~~~~~~~Le~Ia~~tGa~ii 277 (472)
T cd03341 231 ---------------------------------GVNVIVAGGSVGDLALHYCNKYGIMVIKINSKFELRRLCRTVGATPL 277 (472)
T ss_pred ---------------------------------CCeEEEECCCCCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCEEe
Confidence 89999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCcCCccceEEEEEECceEEEEEEecCC-CCeEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHhCCccccCC
Q 036490 333 NRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKD-PKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGG 411 (557)
Q Consensus 333 s~~~~l~~~~lG~~~~~v~~~~ig~~~~~~l~~~~~-~~~~TIll~G~t~~~l~e~~~~l~dal~~~~~~l~~g~vvpGG 411 (557)
+++++++++++|+ |+.|+++++|+++|++|++|.. +++|||+|||+|+.+++|+||+++||++++++++++|++||||
T Consensus 278 ~~~~~l~~~~lG~-~~~v~~~~ig~~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~er~i~DAl~~~~~ai~~~~vVpGG 356 (472)
T cd03341 278 PRLGAPTPEEIGY-CDSVYVEEIGDTKVVVFRQNKEDSKIATIVLRGATQNILDDVERAIDDGVNVFKSLTKDGRFVPGA 356 (472)
T ss_pred cccccCCHhHCCC-ceEEEEEEECCeeEEEEEccCCCCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCc
Confidence 9999999999999 9999999999999999999987 8999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHhhccCCCchhHHHHHHHHHhhhhHHHHHHhcCCCHHHHHHHHHHHhhCCCCceEEEeCCCC--cccc
Q 036490 412 GATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTG--AISD 489 (557)
Q Consensus 412 G~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~~~~~~~~~~Gid~~~g--~i~d 489 (557)
|++|++++.+|++++...++++++++++|++||+.||++|++|||+|+.+++.+|+..|..++ .++|||+.+| ++.|
T Consensus 357 G~~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~-~~~Gid~~~g~~~~~d 435 (472)
T cd03341 357 GATEIELAKKLKEYGEKTPGLEQYAIKKFAEAFEVVPRTLAENAGLDATEVLSELYAAHQKGN-KSAGVDIESGDEGTKD 435 (472)
T ss_pred CHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccC-CeeeeeccCCCCCccC
Confidence 999999999999988888889999999999999999999999999999999999999897765 6899999999 9999
Q ss_pred cccCccccchHHHHHHHHHHHHHHHHHHhhhhhhcC
Q 036490 490 MKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSG 525 (557)
Q Consensus 490 ~~~~gi~dp~~vk~~~l~~A~e~a~~lL~id~ii~~ 525 (557)
|++.|||||+.||+++|+.|+|+|++|||||++|..
T Consensus 436 ~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~ 471 (472)
T cd03341 436 AKEAGIFDHLATKKWAIKLATEAAVTVLRVDQIIMA 471 (472)
T ss_pred hhhccceecHHHHHHHHHHHHHHHHHHhhhcceeec
Confidence 999999999999999999999999999999999864
No 23
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=5.9e-95 Score=778.27 Aligned_cols=462 Identities=48% Similarity=0.760 Sum_probs=443.0
Q ss_pred cccchHHHHHHHHHHHHHHHHhhhcCCcccccceeecCCCCEEEeccHHHHhhhccccChHHHHHHHHHHhhhhhcCCCh
Q 036490 14 RESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGT 93 (557)
Q Consensus 14 ~~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iT~DG~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGt 93 (557)
..++++++..|++||..+++++++||||+|++|||+++.|+++|||||+||+++|+++||+++++++++++|++++||||
T Consensus 3 ~~~~~~~~~~~~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~i~~~hp~a~ll~~~~~~~~~~~GDGT 82 (464)
T cd00309 3 REFGEEARLSNINAAKALADAVKTTLGPKGMDKMLVDSLGDPTITNDGATILKEIEVEHPAAKLLVEVAKSQDDEVGDGT 82 (464)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhcccCCCcCcEEEEcCCCCeEEEccHHHHHHhccCcCHHHHHHHHHHHHHHhHhCCch
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhccccCCCCcHHHHHHHHHHhhhccccchhHHHHHHH
Q 036490 94 TSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAMPIDANDRATVLGLVKSCIGTKFTSQFGDLLADL 173 (557)
Q Consensus 94 tt~viL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~i~~~~~~~l~~va~t~l~sk~~~~~~~~ls~l 173 (557)
||+++|+++|++++.+++++|+||..|++||+.|++.++++|++++++++..+.+.+.++++|+++||+.+.|+++++++
T Consensus 83 tt~viL~~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~l~~l 162 (464)
T cd00309 83 TTVVVLAGELLKEAEKLLAAGIHPTEIIRGYEKAVEKALEILKEIAVPIDVEDREELLKVATTSLNSKLVSGGDDFLGEL 162 (464)
T ss_pred hHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCccCCCCHHHHHHHhHhcccccccccchHHHHHH
Confidence 99999999999999999999999999999999999999999999999976668899999999999999999999999999
Q ss_pred HHHHHhhcccccCCCccccCcccceEEEEecCCCCCCcEEEEeEEEeccccCCCCCcccccCceEEEEeccccccccccc
Q 036490 174 AIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENQ 253 (557)
Q Consensus 174 v~~a~~~v~~~~~~g~~~~d~~~~I~I~~i~G~~~~~S~li~Givl~~~~~~~~~~~~~~~n~~Ill~~~~Le~~k~~~~ 253 (557)
+++|+.+++++. . .+|.. +|+|++++|+++.+|++++|++|++++.++ .|++.++||+|++++++|++
T Consensus 163 ~~~Ai~~v~~~~--~--~~~~~-~I~i~k~~gg~~~ds~li~Gi~~~~~~~~~-~m~~~~~n~~Ili~~~~Le~------ 230 (464)
T cd00309 163 VVDAVLKVGKEN--G--DVDLG-VIRVEKKKGGSLEDSELVVGMVFDKGYLSP-YMPKRLENAKILLLDCKLEY------ 230 (464)
T ss_pred HHHHHHHhcccc--C--ccccc-eEEEEecCCCCcccceeeeeEEEecCCCCC-CCceeecCceEEEEecCcce------
Confidence 999999998532 1 34443 699999999999999999999999999998 89999999999999999985
Q ss_pred ceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCCeeEecCChhHHHHHHHHhCCcccc
Q 036490 254 TNAELVKEEDWGVMLKIEEDYIENLCMQIVKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVN 333 (557)
Q Consensus 254 ~~~~i~~~~~l~~~~~~E~~~i~~~v~~i~~~~~~lIi~~~~i~~~al~~L~~~~I~~v~~v~~~~le~Ia~~tGa~iis 333 (557)
||+++++|++.++++|.++||++++++++++|+||+++||+++++
T Consensus 231 -----------------------------------lIi~~~~I~~~al~~L~~~~I~~v~~~~~~~L~~Ia~~tGa~ii~ 275 (464)
T cd00309 231 -----------------------------------VVIAEKGIDDEALHYLAKLGIMAVRRVRKEDLERIAKATGATIVS 275 (464)
T ss_pred -----------------------------------EEecCCCcCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCEEec
Confidence 999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcCCccceEEEEEECceEEEEEEecCCCCeEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHhCCccccCCCc
Q 036490 334 RPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGA 413 (557)
Q Consensus 334 ~~~~l~~~~lG~~~~~v~~~~ig~~~~~~l~~~~~~~~~TIll~G~t~~~l~e~~~~l~dal~~~~~~l~~g~vvpGGG~ 413 (557)
+++++++..+|+ |+.+++.++|+++|++|++|..++.|||+|||+|+.+++|+||+++||+++++++++++++|||||+
T Consensus 276 ~~~~~~~~~lG~-~~~v~~~~~g~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGGa 354 (464)
T cd00309 276 RLEDLTPEDLGT-AGLVEETKIGDEKYTFIEGCKGGKVATILLRGATEVELDEAERSLHDALCAVRAAVEDGGIVPGGGA 354 (464)
T ss_pred ccccCCcccCcc-ccEEEEEEEcCeeEEEEEecCCCCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCcH
Confidence 999999999999 9999999999999999999998999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhccCCCchhHHHHHHHHHhhhhHHHHHHhcCCCHHHHHHHHHHHhhCCCCceEEEeCCCCcccccccC
Q 036490 414 TELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEG 493 (557)
Q Consensus 414 ~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~~~~~~~~~~Gid~~~g~i~d~~~~ 493 (557)
+|++++++|++++...++++++++++|++||+.||++|++|||+|+.+++.+|+..|..+. .++|+|..+|++.||++.
T Consensus 355 ~E~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~-~~~g~d~~~~~~~d~~~~ 433 (464)
T cd00309 355 AEIELSKALEELAKTLPGKEQLGIEAFADALEVIPRTLAENAGLDPIEVVTKLRAKHAEGG-GNAGGDVETGEIVDMKEA 433 (464)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhccC-CCeeEECCCCcEeehhhc
Confidence 9999999999998888899999999999999999999999999999999999999887664 688999999999999999
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHhhhhhhc
Q 036490 494 KIWDAYNVKAQTFKTAIEAACMLLRIDDIVS 524 (557)
Q Consensus 494 gi~dp~~vk~~~l~~A~e~a~~lL~id~ii~ 524 (557)
|||||+.||+++|+.|+|+|++||+||++|.
T Consensus 434 gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~ 464 (464)
T cd00309 434 GIIDPLKVKRQALKSATEAASLILTIDDIIV 464 (464)
T ss_pred cCeecHHHHHHHHHHHHHHHHHHHhHHHHhC
Confidence 9999999999999999999999999999974
No 24
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-94 Score=766.26 Aligned_cols=506 Identities=37% Similarity=0.569 Sum_probs=472.1
Q ss_pred cccccchHHHHHHHHHHHHHHHHhhhcCCcccccceeecCCCCEEEeccHHHHhhhccccChHHHHHHHHHHhhhhhcCC
Q 036490 12 LKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGD 91 (557)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iT~DG~tIl~~l~~~hP~a~ll~~~~~~~~~~~GD 91 (557)
....+|.++|.+|+.|+..++++||+||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|++||+++||
T Consensus 4 ~~~~~~~~a~~~~~~~~~~la~~vkttLGPkG~~k~l~~~~g~~~iTnDG~tIlkeielehp~akll~eva~~qd~e~GD 83 (524)
T COG0459 4 KERKFGEDARRSNIRAARALADAVKTTLGPKGRNKMLVDSGGDITITNDGVTILKEIELEHPGAKLLVEVAKKQDDEAGD 83 (524)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhccCCCcCceEEecCCCCEEEecCcceehhhhhccCchhHHHHHHHHHHHHHhcC
Confidence 35678999999999999999999999999999999999997799999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhccccCCCCcHHHHHHHHHHhhhccccchhHHHHH
Q 036490 92 GTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAMPIDANDRATVLGLVKSCIGTKFTSQFGDLLA 171 (557)
Q Consensus 92 Gttt~viL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~i~~~~~~~l~~va~t~l~sk~~~~~~~~ls 171 (557)
||||++||+++||+++.+++++|+||+.|++||++|.+.++++|++++++++..+.+. +++.|++++|+.+++ ++++
T Consensus 84 GTTtavVLa~all~ea~~li~~gi~P~~I~~G~~~A~~~~~e~l~~~a~~v~~~~~~~--~~~~t~v~sk~~~~~-~~i~ 160 (524)
T COG0459 84 GTTTAVVLAGALLKEAEKLIAAGIHPTVIKRGYRLAVEKAVEELKEIAKPVSDSEEEL--KIAITSVASKSANSD-EEIG 160 (524)
T ss_pred chHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhh--hhhhheeeeeeccCh-HHHH
Confidence 9999999999999999999999999999999999999999999999999998644433 889999999988766 9999
Q ss_pred HHHHHHHhhcccccCCCccccCcccceEEEEecCCCCCCcEEEEeEEEeccccCCCCCc-ccccCceEEEEecccccccc
Q 036490 172 DLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMR-RKIVNPRIILLDSPLEYKKG 250 (557)
Q Consensus 172 ~lv~~a~~~v~~~~~~g~~~~d~~~~I~I~~i~G~~~~~S~li~Givl~~~~~~~~~~~-~~~~n~~Ill~~~~Le~~k~ 250 (557)
+++++|+.+++... . |++ .|.+.+..|+..+++++++|++|++++..+..|| +.++||+|+++|++|++.++
T Consensus 161 ~lv~~Av~~v~~~~----~--d~~-~i~~vk~~gg~~~e~~vveG~~~dkg~~s~~~~~~~~~e~~~Ili~d~~l~~~k~ 233 (524)
T COG0459 161 ELVVEAVEKVGKEQ----S--DLD-GIIIVKESGGSETELEVVEGMVFDKGYLSPYFMPDKRLENPKILLLDKKLEIKKP 233 (524)
T ss_pred HHHHHHHHHhcccc----c--ccC-CeEEEEecCCCccceEEEeeEEecCCccCCCCCCccccccceEEEEccccccccc
Confidence 99999999998521 1 443 5889999999999999999999999655544899 89999999999999999999
Q ss_pred cccceEEEcCHHHHHHHHHHHH-HHHHHHHHHHHHcCCc-EEEeCCCCCHHHHHHHHHcCCeeEecCChhHH-HHHHHHh
Q 036490 251 ENQTNAELVKEEDWGVMLKIEE-DYIENLCMQIVKFKPD-LVITEKGLSDLACHYLSKAGVSAIRRLRKTDN-NRIAKAC 327 (557)
Q Consensus 251 ~~~~~~~i~~~~~l~~~~~~E~-~~i~~~v~~i~~~~~~-lIi~~~~i~~~al~~L~~~~I~~v~~v~~~~l-e~Ia~~t 327 (557)
..+.++.++++++|..+.+.|+ +.+..+++++.+.++| +++++++++|.+++||.+.+|++++++.++++ ++|++++
T Consensus 234 ~l~~e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~~Ilt~~~v~~~dl~~~l~~~~ 313 (524)
T COG0459 234 ELPLEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYLEDIAILTGRRVKKEDLGERLAKLG 313 (524)
T ss_pred cCcceeEecCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhhcceecceecchhhHHHHHHcc
Confidence 9999999999999999999999 9999999999999999 99999999999999999999999999999999 8999999
Q ss_pred CCccccCCCCCCCCCcCC-ccceEEEEEECceEEEEEEecCC--CCeEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHhC
Q 036490 328 GAVIVNRPDELQESDVGT-GAGLFEVKKIGDEFFAFIVDCKD--PKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKN 404 (557)
Q Consensus 328 Ga~iis~~~~l~~~~lG~-~~~~v~~~~ig~~~~~~l~~~~~--~~~~TIll~G~t~~~l~e~~~~l~dal~~~~~~l~~ 404 (557)
||++++.++++++..+|. .|..++..++|++++.+|++|.. +++|||+|||+|+.+++|.+|+++|||+++++++++
T Consensus 314 ga~~v~~~~d~t~~~~G~~~~~~ve~~~~~~~~~~~~~~~~~~~~~~~tI~vrgate~~ldE~er~i~DAL~~~~~ave~ 393 (524)
T COG0459 314 GAKIVSVLKDLTTIVLGEGAAGLVEETKTGDYDMEKLQERKAKAGGVATILVRGATEVELDEKERRIEDALNVVRAAVEE 393 (524)
T ss_pred CceEEeecccCceeecCccccceEEEeeccchhhhhhhhhhhcCCCeEEEEECCccHhHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999888882 28999999999999999999985 889999999999999999999999999999999999
Q ss_pred CccccCCCchHHHHHHHHHHhhccCCC-chhHHHHHHHHHhhhhHHHHHHhcCCCHHHHHHHHHHHhhCCCCceEEEeCC
Q 036490 405 PKLVPGGGATELTVSATLKQKSSSIEG-IEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGN 483 (557)
Q Consensus 405 g~vvpGGG~~e~~l~~~L~~~~~~~~~-~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~~~~~~~~~~Gid~~ 483 (557)
|++|||||++|++++..|++++...++ ++|+++++|++||+.||++|++|||+|+.+++.+|++.|. .+++|+|+.
T Consensus 394 g~iV~GGGa~e~~~a~~L~~~~~~~~g~~e~~~i~~~a~Ale~ip~~La~NaG~d~~~v~~~L~~~~~---~~~~G~d~~ 470 (524)
T COG0459 394 GKIVPGGGAAEIEAALRLREYAMTVEGGDEQLGIEAFARALEAPPRQLAENAGLDPIEVLSKLRSAHA---TTNYGIDAF 470 (524)
T ss_pred CCeEeCCCHHHHHHHHHHHhhhccCCchHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccc---CCccceecc
Confidence 999999999999999999987444454 8999999999999999999999999999999999999874 146999999
Q ss_pred CCcc-cccccCccccchHHHHHHHHHHHHHHHHHHhhhhhhcCCccCC
Q 036490 484 TGAI-SDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQ 530 (557)
Q Consensus 484 ~g~i-~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~id~ii~~~~~~~ 530 (557)
+|++ .||.+.|||||+.||+++|+.|+|+|++||++|++|...|++.
T Consensus 471 ~~~~~~dm~~~GI~dP~~v~~~al~~A~e~a~llL~~d~iI~~~~~~~ 518 (524)
T COG0459 471 TGEYEDDMIEAGIIDPLKVKRSALKNAAEAAGLLLTIDDIIAAKPEEK 518 (524)
T ss_pred CCccccchHhccCcChHHHHHHHHHHHHHHHHHHHHHHHhhccCCccc
Confidence 9999 7799999999999999999999999999999999999877653
No 25
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-94 Score=707.97 Aligned_cols=524 Identities=69% Similarity=1.062 Sum_probs=509.3
Q ss_pred CCCCccccccccccccchHHHHHHHHHHHHHHHHhhhcCCcccccceeecCCCCEEEeccHHHHhhhccccChHHHHHHH
Q 036490 1 MHSPVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIE 80 (557)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iT~DG~tIl~~l~~~hP~a~ll~~ 80 (557)
|+.|+-.++.+..+++|.+++..|++|++++++++++|+||+.|.||+.++.|.+..||||..||+++++.||.|+-+.+
T Consensus 1 m~apv~~~~~~~~re~g~kvq~~ni~aak~iadvirtclgp~am~kmlld~~g~i~~tndg~ailrei~Vahpaaksmie 80 (527)
T KOG0364|consen 1 MQAPVLVLSKNTKRESGRKVQLGNIQAAKAIADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVAHPAAKSMIE 80 (527)
T ss_pred CCCceeecccccCcCccccccccchhhHHHHHHHHHHhcChHHHHHHhhccCCceEEecCcHHHHHHHhhcCcchhhHhh
Confidence 89999888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhccccCCCCcHHHHHHHHHHhhhc
Q 036490 81 LSRTQDEEVGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAMPIDANDRATVLGLVKSCIGT 160 (557)
Q Consensus 81 ~~~~~~~~~GDGttt~viL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~i~~~~~~~l~~va~t~l~s 160 (557)
++..||+++||||||+++|++++|.++..++++++||..|+++|.+|++.++..++.++.|+|.++...+.+++++++.+
T Consensus 81 l~rtqdeevgdgttsvi~lagE~L~~~~~~l~~~~Hp~~i~ka~~~aled~~~~~~~~~~~~d~~~~~km~~vi~~~v~t 160 (527)
T KOG0364|consen 81 LSRTQDEEVGDGTTSVIILAGEMLNVAEPFLEEGIHPTVIIKAYIKALEDNIRALDKISIPVDVKDQAKMLRVINSSVGT 160 (527)
T ss_pred hhhcccccccCCceeeeeehHHHhhhcchhhhcCcchHHHHHHHHHHHHHHHHHHHhhcccCCcccHHHHHhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999998899999999999999
Q ss_pred cccchhHHHHHHHHHHHHhhcccccCCCccccCcccceEEEEecCCCCCCcEEEEeEEEeccccCCCCCcccccCceEEE
Q 036490 161 KFTSQFGDLLADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIIL 240 (557)
Q Consensus 161 k~~~~~~~~ls~lv~~a~~~v~~~~~~g~~~~d~~~~I~I~~i~G~~~~~S~li~Givl~~~~~~~~~~~~~~~n~~Ill 240 (557)
|+.+.|.+.++++..+|+.+++.+ +|. .+|+.++.++.|++|+.+++|++++|+.+.+++.|| .|...++||||++
T Consensus 161 k~~~~~~~~~~~lal~avk~V~~~--~g~-e~dik~y~kveKvpgg~l~~s~vl~Gv~~nkdv~Hp-kmrr~IenprivL 236 (527)
T KOG0364|consen 161 KFNSRWSDLICNLALDAVKTVGVE--NGR-EIDIKRYAKVEKVPGGLLEDSCVLKGVMINKDVTHP-KMRRAIENPRIVL 236 (527)
T ss_pred hhhhhhcchhhhHHHHHHHHhhhc--cCc-eechhhhccccccCcccccccceecceeeccccCcH-HHHHHhhcCcEEE
Confidence 999999999999999999999864 453 799999999999999999999999999999999999 9999999999999
Q ss_pred EecccccccccccceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCCeeEecCChhHH
Q 036490 241 LDSPLEYKKGENQTNAELVKEEDWGVMLKIEEDYIENLCMQIVKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDN 320 (557)
Q Consensus 241 ~~~~Le~~k~~~~~~~~i~~~~~l~~~~~~E~~~i~~~v~~i~~~~~~lIi~~~~i~~~al~~L~~~~I~~v~~v~~~~l 320 (557)
+||+|+|.+.+++.++.+...++|...++-|++++..+++.|....+++|++++++++.+++||.+.||.+++++++.+.
T Consensus 237 lD~~LeykkGeSqtnve~~~eed~~r~Lqieee~v~~mc~~Ii~v~pDlVitekG~sdla~hyl~k~~iT~~rr~rKtDn 316 (527)
T KOG0364|consen 237 LDCPLEYKKGESQTNVEIVKEEDFTRILQIEEEQVQAMCEVIIAVKPDLVITEKGVSDLAQHYLLKANITAIRRLRKTDN 316 (527)
T ss_pred ecCCccCCCCccccceeeeechhHHHHHHhhHHHHHHHHHHHHeecccEEEeccchhHHHHHHHHhcCchhhhhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCccccCCCCCCCCCcCCccceEEEEEECceEEEEEEecCCCCeEEEEEccCCHHHHHHHHHHHHHHHHHHHH
Q 036490 321 NRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARN 400 (557)
Q Consensus 321 e~Ia~~tGa~iis~~~~l~~~~lG~~~~~v~~~~ig~~~~~~l~~~~~~~~~TIll~G~t~~~l~e~~~~l~dal~~~~~ 400 (557)
.||+++|||+++++.+++.+.+.|+.|+.|+..++|+++|.||..|..++.|||++|||++.+++|.+|.+.||+.+.|+
T Consensus 317 ~ria~acga~iv~rpedl~e~dvGt~agLf~~kK~gdeyf~f~~~Ck~pkaCtillrg~skdil~e~ernlqda~~varn 396 (527)
T KOG0364|consen 317 NRIARACGARIVNRPEDLPERDVGTGAGLFEVKKIGDEYFTFFTDCKEPKACTILLRGPSKDILNEVERNLQDAMGVARN 396 (527)
T ss_pred chhhhhcCceeccChhhCchhccCcccceeeeeccCchhhhhhhhcCCCcceEEEeccCchhHHHHHHHHhhhHHHHHHH
Confidence 99999999999999999999999988999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCccccCCCchHHHHHHHHHHhhccCCCchhHHHHHHHHHhhhhHHHHHHhcCCCHHHHHHHHHHHhhCCCCceEEE
Q 036490 401 IIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGI 480 (557)
Q Consensus 401 ~l~~g~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~~~~~~~~~~Gi 480 (557)
.+-+|+++||||++||.+++.|++.+...++-+++.+++.+.||+.+|++|++|+|.++...+..++..|..|. ..+|+
T Consensus 397 ~ii~PklvPGGGAtEMAvs~~L~qksa~~~GVekwPY~Ava~AlEviPrtliqncGan~Ir~lTalr~kh~~G~-~~~gi 475 (527)
T KOG0364|consen 397 VIINPKLVPGGGATEMAVSHELRQKSALMTGVEKWPYGAVAGALEVIPRTLIQNCGANPIRALTALRAKHKEGQ-RVWGI 475 (527)
T ss_pred hccCCcccCCccHHHHHHHHHHHHHHhhccchhccchhhhhcCceeccHHHHhhcCccHHHHHHHHHHHhcCcc-eeecc
Confidence 99999999999999999999999988888899999999999999999999999999999999999999998775 77899
Q ss_pred eCCCCcccccccCccccchHHHHHHHHHHHHHHHHHHhhhhhhcCCccC
Q 036490 481 DGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKK 529 (557)
Q Consensus 481 d~~~g~i~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~id~ii~~~~~~ 529 (557)
|..+|.+.||.+.++|+|..+|.+..++|+|.+++|||||+++....++
T Consensus 476 ~g~tg~iVDm~~~~iwep~~vK~Q~~ktavesa~~LLRIddIvsg~kk~ 524 (527)
T KOG0364|consen 476 DGETGVIVDMVELGIWEPEAVKLQTGKTAVESACLLLRIDDIVSGKKKR 524 (527)
T ss_pred cCceeeEeeeeeccccchhhhhhhhhhHHHHHHHHHHhhhceeeeeeec
Confidence 9999999999999999999999999999999999999999999876554
No 26
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=100.00 E-value=8e-92 Score=761.70 Aligned_cols=483 Identities=40% Similarity=0.684 Sum_probs=460.4
Q ss_pred HHHHhhhcCCcccccceeecCCCCEEEeccHHHHhhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHHHHHHH
Q 036490 31 VADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEF 110 (557)
Q Consensus 31 l~~~v~sslGP~G~~k~i~~~~g~~~iT~DG~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGttt~viL~~~Ll~~~~~l 110 (557)
|+++|++||||+|++|||+++.|++++||||+||+++++++||+++++++++++|++++||||||+++|+++|++++.++
T Consensus 1 l~~~v~sslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~~P~~~ll~~~~~~~~~~~GDGtts~vlL~~~ll~~~~~l 80 (485)
T PF00118_consen 1 LADIVKSSLGPKGRDKLIVNDSGKIIITNDGATILKSLKINHPIAKLLVEASKSQDEEVGDGTTSVVLLACELLRNALKL 80 (485)
T ss_dssp HHHHHGCCSSTTS-EEEEEESSSSEEEESSHHHHHHHSTBSSHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhcccCcCCCCCeEEEEcCCCCeEEEechhHHHHHhhhccchhhhHHHhHHHHHhhhccccceeeecccchhhhhhhh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCChhHHHHHHHHHHHHHHHHHhhccccCCCCcHHHHHHHHHHhhhccccchhHHHHHHHHHHHHhhcccccCCCcc
Q 036490 111 INKNYHPTVICRAYNKALEDAVAVLDTIAMPIDANDRATVLGLVKSCIGTKFTSQFGDLLADLAIDATTTVGVDLGQGLR 190 (557)
Q Consensus 111 i~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~i~~~~~~~l~~va~t~l~sk~~~~~~~~ls~lv~~a~~~v~~~~~~g~~ 190 (557)
+++|+||..|++||+.+++.++++|++++++++..+ +.++++++|++++|+...|.+++++++++|+..+..
T Consensus 81 i~~gi~p~~I~~~~~~~~~~~~~~l~~~s~~~~~~~-~~l~~i~~t~l~~k~~~~~~~~l~~li~~a~~~~~~------- 152 (485)
T PF00118_consen 81 IKKGIHPQEIIRGLQEALKIILEYLEKISIPINNDD-ESLLNIAKTSLNSKISSSWSDHLSKLIVDAIKSIKS------- 152 (485)
T ss_dssp HHTTS-HHHHHHHHHHHHHHHHHHHHHHSEESTSTS-HHHHHHHHHHHTTSCGGGCHHHHHHHHHHHHHHHTT-------
T ss_pred hhccccccchhhhhhhhhhhhhhhhhhhhccccccc-hhhhhhhcccccccccccchhhhhhhHHHHHHhhcc-------
Confidence 999999999999999999999999999999987532 899999999999999999999999999999954432
Q ss_pred ccCcccceEEEEecCCCCCCcEEEEeEEEeccccCCCCCcccccCceEEEEecccccccccccceEEEcCHHHHHHHHHH
Q 036490 191 EVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWGVMLKI 270 (557)
Q Consensus 191 ~~d~~~~I~I~~i~G~~~~~S~li~Givl~~~~~~~~~~~~~~~n~~Ill~~~~Le~~k~~~~~~~~i~~~~~l~~~~~~ 270 (557)
.+|++ ++.++++.|++.++|++++|++|++++.++ +|+++++||+|++++++|++.++ .+.++.+++.+++..+.++
T Consensus 153 ~~~~~-~i~i~~i~g~~~~dS~li~Giv~~~~~~~~-~~~~~~~~~~Ill~~~~L~~~~~-~~~~~~~~~~~~~~~~~~~ 229 (485)
T PF00118_consen 153 NFDLD-NIKIIKIPGGSISDSELINGIVLDKGFSSP-NMPKKIENPKILLLNCPLEYSKS-FKSEIRITSPEQLDELSKQ 229 (485)
T ss_dssp THHGG-GEEEEEEESSSSGGEEEESEEEESSSBSST-TSBSEEESEEEEEESSEBSSCCH-STEEEEESSTHHHHHHHHH
T ss_pred ccccc-chhhhhhccccccccccccceeeecccccc-ccccccccceEEeeecccccccc-cccccchhhHHHHHHHHhh
Confidence 14554 499999999999999999999999999998 89999999999999999999988 8999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCCeeEecCChhHHHHHHHHhCCccccCCCCCCCCCcCCccceE
Q 036490 271 EEDYIENLCMQIVKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLF 350 (557)
Q Consensus 271 E~~~i~~~v~~i~~~~~~lIi~~~~i~~~al~~L~~~~I~~v~~v~~~~le~Ia~~tGa~iis~~~~l~~~~lG~~~~~v 350 (557)
|+++++++++++.+.|+++|+++++|++.++++|.++||.+++++++++|++|+++||+++++++++++++.+|+ |+.+
T Consensus 230 e~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~~i~~v~~~~l~~i~~~tg~~ii~~~~~l~~~~lG~-~~~v 308 (485)
T PF00118_consen 230 EKKYLKKILEKIINLGVNLIISQKSIDDEALQYLNKNGILVIRRVSKEDLERIARATGASIISSLDDLSDEDLGF-CKSV 308 (485)
T ss_dssp HHHHHHHHHHHHHTTTSSEEEESSEBTHHHHHHHHHCTHEEESSEHHHHHHHHHHHHTSBEBSSCGGSTGGGSEE-EEEE
T ss_pred hhhhhccccceEeeeccceeeeecccccccchhhhhhhhhccccchHHHHHhhhcccCCcEecccccccchhhhh-hhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988999 9999
Q ss_pred EEEEECceEEEEEE--ecCCCCeEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHhCCccccCCCchHHHHHHHHHHhhcc
Q 036490 351 EVKKIGDEFFAFIV--DCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSS 428 (557)
Q Consensus 351 ~~~~ig~~~~~~l~--~~~~~~~~TIll~G~t~~~l~e~~~~l~dal~~~~~~l~~g~vvpGGG~~e~~l~~~L~~~~~~ 428 (557)
+++.+++++|++++ +|..++.+||+|||+++.+++|++++++||+++++++++++++|||||++|++|+++|++++..
T Consensus 309 ~~~~i~~~~~~~~~~~~~~~~~~~Till~g~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~e~~l~~~L~~~~~~ 388 (485)
T PF00118_consen 309 EEREIGNKKYIFIEGIGCLSSKICTILLRGPTEFELEERERSIHDALKVLRSALKDGGVVPGGGATELHLSKALRKYAKS 388 (485)
T ss_dssp EEEEETSSEEEEEEEHSESSSSEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHSSEEEETTTHHHHHHHHHHHHHHHC
T ss_pred hhcccccccccccccccccccCceEEEeccccchhHHHHHHHHHHHHHHHHHhccCCceeecCcchhhhhhhhHHHhhhc
Confidence 99999999999999 5888999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCchhHHHHHHHHHhhhhHHHHHHhcCCCHHHHHHHHHHHhhCCCCceEEEeCCCCcccccccCccccchHHHHHHHHH
Q 036490 429 IEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKT 508 (557)
Q Consensus 429 ~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~~~~~~~~~~Gid~~~g~i~d~~~~gi~dp~~vk~~~l~~ 508 (557)
.++++++++++|++||+.||++|++|||+|+.+++.+++..|..+ .++|+|+.+|++.||.+.|||||+.+|+++|+.
T Consensus 389 ~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~h~~~--~~~g~d~~~~~i~~~~~~gi~dp~~~k~~~l~~ 466 (485)
T PF00118_consen 389 LSGKEQLAIEAFADALESIPKTLAQNAGLDSSEVISKLKSFHNNG--NNYGIDLDTGEIVDMKEAGILDPLLVKISALKS 466 (485)
T ss_dssp SSSHHHHHHHHHHHHTTHHHHHHHHHTTSTHHHHHHHHHHHHHST--TTEEEETTTTEEEETTTTTCEEEHHHHHHHHHH
T ss_pred ccCchhhhHHHHHHHHHHhhhhhhhccCCCceeeehhhHhhhccc--cccCcCccCCceeccccccchhhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988665 489999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhcCCc
Q 036490 509 AIEAACMLLRIDDIVSGIK 527 (557)
Q Consensus 509 A~e~a~~lL~id~ii~~~~ 527 (557)
|+|+|++||+||++|...|
T Consensus 467 A~~~a~~iL~id~iI~~~~ 485 (485)
T PF00118_consen 467 AVEIASLILRIDEIIMAKP 485 (485)
T ss_dssp HHHHHHHHHTEEEEEEESS
T ss_pred HHHHHHHHHHHHHHHhcCC
Confidence 9999999999999998743
No 27
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1.3e-89 Score=740.80 Aligned_cols=459 Identities=23% Similarity=0.346 Sum_probs=422.5
Q ss_pred cccchHHHHHHHHHHHHHHHHhhhcCCcccccceeecCCCCEEEeccHHHHhhhccccCh----HHHHHHHHHHhhhhhc
Q 036490 14 RESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHP----AAKSMIELSRTQDEEV 89 (557)
Q Consensus 14 ~~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iT~DG~tIl~~l~~~hP----~a~ll~~~~~~~~~~~ 89 (557)
-.+|.+++..|+.|+..++++|++||||+||+|||+++.|+++|||||+||+++|+++|| +|++++++|++|++++
T Consensus 5 ~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~ITnDGaTIlk~i~~~hp~~~~~a~ll~~~a~~qd~e~ 84 (542)
T PRK12849 5 IKFDEEARRALERGVNKLADAVKVTLGPKGRNVVIDKSFGAPTITKDGVSIAKEIELEDPFENLGAQLVKEVASKTNDVA 84 (542)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCccHhHHHHHHHHHHHhcCCcc
Confidence 357899999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhccccCCCCcHHHHHHHHHHhhhccccchhHHH
Q 036490 90 GDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAMPIDANDRATVLGLVKSCIGTKFTSQFGDL 169 (557)
Q Consensus 90 GDGttt~viL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~i~~~~~~~l~~va~t~l~sk~~~~~~~~ 169 (557)
||||||+++|+++||+++.+++++|+||..|++||+.|++.++++|+++++|++ +.+.+.++++|+. +++++
T Consensus 85 GDGTTtvviLageLL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~~~--~~~~l~~va~ts~------~~~~~ 156 (542)
T PRK12849 85 GDGTTTATVLAQALVQEGLKNVAAGANPMDLKRGIDKAVEAVVEELKALARPVS--GSEEIAQVATISA------NGDEE 156 (542)
T ss_pred CCCccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCC--CHHHHHHHHHHhc------CChHH
Confidence 999999999999999999999999999999999999999999999999999987 6778999999874 37899
Q ss_pred HHHHHHHHHhhcccccCCCccccCcccceEEEEecCCCCCC-cEEEEeEEEeccccCCC------CCcccccCceEEEEe
Q 036490 170 LADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLED-SRVLKGVMFNKDVVAPG------KMRRKIVNPRIILLD 242 (557)
Q Consensus 170 ls~lv~~a~~~v~~~~~~g~~~~d~~~~I~I~~i~G~~~~~-S~li~Givl~~~~~~~~------~~~~~~~n~~Ill~~ 242 (557)
+++++++|+..++. ++. +.+. .|+..++ +++++|++|++++.+|. .|++.++||+|+++|
T Consensus 157 l~~lv~~Av~~v~~---~g~--------i~i~--~g~~~~d~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d 223 (542)
T PRK12849 157 IGELIAEAMEKVGK---DGV--------ITVE--ESKTLETELEVTEGMQFDRGYLSPYFVTDPERMEAVLEDPLILLTD 223 (542)
T ss_pred HHHHHHHHHHHhcc---CCc--------EeEE--eCCCcceeEEEEEeEEEecCcccCcccccccCceEEeeCcEEEeec
Confidence 99999999999974 232 3443 5877775 79999999999999873 358899999999999
Q ss_pred cccccccccccceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHc------CCeeEecCC
Q 036490 243 SPLEYKKGENQTNAELVKEEDWGVMLKIEEDYIENLCMQIVKFKPDLVITEKGLSDLACHYLSKA------GVSAIRRLR 316 (557)
Q Consensus 243 ~~Le~~k~~~~~~~~i~~~~~l~~~~~~E~~~i~~~v~~i~~~~~~lIi~~~~i~~~al~~L~~~------~I~~v~~v~ 316 (557)
+.++ +.+++. ++++++.+.+++|||++++|++.++++|.++ +|+++++++
T Consensus 224 ~~i~-------------~~~~~~-----------~~l~~i~~~~~~lvI~~~~I~~~al~~l~~~~~~~~~~i~avr~~~ 279 (542)
T PRK12849 224 KKIS-------------SLQDLL-----------PLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPG 279 (542)
T ss_pred CCcC-------------CHHHHH-----------HHHHHHHHhCCCEEEECCCCcHHHHHHHHHhhhhccccEEEEeCCC
Confidence 9753 444443 5778999999999999999999999999998 899999777
Q ss_pred -----hhHHHHHHHHhCCcccc-----CCCCCCCCCcCCccceEEEEEECceEEEEEEecCCC-----------------
Q 036490 317 -----KTDNNRIAKACGAVIVN-----RPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDP----------------- 369 (557)
Q Consensus 317 -----~~~le~Ia~~tGa~iis-----~~~~l~~~~lG~~~~~v~~~~ig~~~~~~l~~~~~~----------------- 369 (557)
+++|+||+.+||+++++ +++++++++||+ |+.|++.. ++++++++|.++
T Consensus 280 ~~~~r~~~l~~ia~~tGa~~v~~~~~~~~~~~~~~~LG~-~~~v~~~~---~~~~~i~g~~~~~~i~~r~~~l~~~~~~~ 355 (542)
T PRK12849 280 FGDRRKAMLEDIAILTGGTVISEDLGLKLEEVTLDDLGR-AKRVTITK---DNTTIVDGAGDKEAIEARVAQIRRQIEET 355 (542)
T ss_pred ccchhHhHHHHHHHHhCCEEecccccCCcccCCHHHCce-eeEEEEee---eeEEEEeCCCCHHHHHHHHHHHHHHHHhc
Confidence 45699999999999999 689999889999 99999765 888999988664
Q ss_pred ------------------CeEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHhCCccccCCCchHHHHHHHHHHhhccCCC
Q 036490 370 ------------------KACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEG 431 (557)
Q Consensus 370 ------------------~~~TIll~G~t~~~l~e~~~~l~dal~~~~~~l~~g~vvpGGG~~e~~l~~~L~~~~~~~~~ 431 (557)
+.+||+|||+|+.+++|.+|+++||++++++++++| +|||||++|++++.+|++++ ..++
T Consensus 356 ~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~er~i~DAl~~~~~a~~~g-~VpGGGa~e~~ls~~L~~~~-~~~g 433 (542)
T PRK12849 356 TSDYDREKLQERLAKLAGGVAVIKVGAATEVELKERKDRVEDALNATRAAVEEG-IVPGGGVALLRAAKALDELA-GLNG 433 (542)
T ss_pred CcHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-eecCCCHHHHHHHHHHHHhh-CCCh
Confidence 589999999999999999999999999999999998 99999999999999999988 8889
Q ss_pred chhHHHHHHHHHhhhhHHHHHHhcCCCHHHHHHHHHHHhhCCCCceEEEeCCCCcccccccCccccchHHHHHHHHHHHH
Q 036490 432 IEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIE 511 (557)
Q Consensus 432 ~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~~~~~~~~~~Gid~~~g~i~d~~~~gi~dp~~vk~~~l~~A~e 511 (557)
++|+++++|++||+.||++|++|||+|+.+++.+|+..| .++|||+.+|++.||++.|||||+.+|.++|+.|+|
T Consensus 434 ~~~~~i~~~a~Al~~ip~~La~NaG~d~~~vi~~L~~~~-----~~~G~d~~~g~~~d~~~~GV~Dp~~vk~~al~~A~e 508 (542)
T PRK12849 434 DQAAGVEIVRRALEAPLRQIAENAGLDGSVVVAKVLELE-----DGFGFNAATGEYGDLIAAGIIDPVKVTRSALQNAAS 508 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhhC-----CCcceeCCCCccccHHhccCccCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998875 579999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhcCCcc
Q 036490 512 AACMLLRIDDIVSGIKK 528 (557)
Q Consensus 512 ~a~~lL~id~ii~~~~~ 528 (557)
+|++||+||++|...|.
T Consensus 509 ~A~~iL~id~iI~~~~~ 525 (542)
T PRK12849 509 VAGLLLTTEALVADKPE 525 (542)
T ss_pred HHHHHHhHHHHHhcCCc
Confidence 99999999999987663
No 28
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1.4e-89 Score=740.69 Aligned_cols=460 Identities=23% Similarity=0.354 Sum_probs=426.2
Q ss_pred cccchHHHHHHHHHHHHHHHHhhhcCCcccccceeecCCCCEEEeccHHHHhhhccccCh----HHHHHHHHHHhhhhhc
Q 036490 14 RESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHP----AAKSMIELSRTQDEEV 89 (557)
Q Consensus 14 ~~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iT~DG~tIl~~l~~~hP----~a~ll~~~~~~~~~~~ 89 (557)
..+|.+++..|++||..++++|++||||+||+|||+++.|+++|||||+|||++|+++|| ++++++++|++|++++
T Consensus 5 ~~~~~~a~~~~i~a~~~ia~~v~ttLGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~e~a~~qd~e~ 84 (542)
T PRK00013 5 IKFGEDARRKLLRGVNKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDPFENMGAQLVKEVASKTNDVA 84 (542)
T ss_pred hhchHHHHHHHHHHHHHHHHHhhccCCCCCCCEEEECCCCCeeEeccHHHHHHHccCCCchhhHHHHHHHHHHHhcCccc
Confidence 467899999999999999999999999999999999999999999999999999999999 7999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhccccCCCCcHHHHHHHHHHhhhccccchhHHH
Q 036490 90 GDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAMPIDANDRATVLGLVKSCIGTKFTSQFGDL 169 (557)
Q Consensus 90 GDGttt~viL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~i~~~~~~~l~~va~t~l~sk~~~~~~~~ 169 (557)
||||||+++|+++||+++.+++++|+||..|++||+.|.+.++++|+++++|++ +.+++.++++|++ ++++.
T Consensus 85 GDGTTtvviLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~~~--~~~~l~~va~ts~------~~~~~ 156 (542)
T PRK00013 85 GDGTTTATVLAQAIVREGLKNVAAGANPMDLKRGIDKAVEAAVEELKKISKPVE--DKEEIAQVATISA------NGDEE 156 (542)
T ss_pred CCccchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhccCCC--CHHHHHHHHHhcc------cchHH
Confidence 999999999999999999999999999999999999999999999999999987 6788999998874 36899
Q ss_pred HHHHHHHHHhhcccccCCCccccCcccceEEEEecCCCCCCcEEEEeEEEeccccCCC------CCcccccCceEEEEec
Q 036490 170 LADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPG------KMRRKIVNPRIILLDS 243 (557)
Q Consensus 170 ls~lv~~a~~~v~~~~~~g~~~~d~~~~I~I~~i~G~~~~~S~li~Givl~~~~~~~~------~~~~~~~n~~Ill~~~ 243 (557)
+++++++|+..++. ++ .|.|.+..| ...++++++|++|++++.+|. .|++.++||+|+++|+
T Consensus 157 ls~lv~~Av~~v~~---~g--------~i~i~~~~~-~~~~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ilv~d~ 224 (542)
T PRK00013 157 IGKLIAEAMEKVGK---EG--------VITVEESKG-FETELEVVEGMQFDRGYLSPYFVTDPEKMEAELENPYILITDK 224 (542)
T ss_pred HHHHHHHHHHHhCc---CC--------cEEEEEcCC-CCceEEEEEeEEecCCcccccccccccCCeEEEecCEEEEEcC
Confidence 99999999999974 23 277877776 768999999999999999872 3588999999999999
Q ss_pred ccccccccccceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcC------CeeEecCC-
Q 036490 244 PLEYKKGENQTNAELVKEEDWGVMLKIEEDYIENLCMQIVKFKPDLVITEKGLSDLACHYLSKAG------VSAIRRLR- 316 (557)
Q Consensus 244 ~Le~~k~~~~~~~~i~~~~~l~~~~~~E~~~i~~~v~~i~~~~~~lIi~~~~i~~~al~~L~~~~------I~~v~~v~- 316 (557)
.++ +.+++. ++++.+.+.|++|||++++|++.++++|..++ |+++++++
T Consensus 225 ~i~-------------~~~~l~-----------~~l~~i~~~g~~lvi~~~~I~~~al~~l~~~~~~g~~~i~avr~~~~ 280 (542)
T PRK00013 225 KIS-------------NIQDLL-----------PVLEQVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLKVVAVKAPGF 280 (542)
T ss_pred ccC-------------CHHHHH-----------HHHHHHHHhCCCEEEECCCCcHHHHHHHHHcCCcccceEEEEecCCc
Confidence 653 445543 67889999999999999999999999999996 88988776
Q ss_pred ----hhHHHHHHHHhCCcccc-----CCCCCCCCCcCCccceEEEEEECceEEEEEEecCCCC-----------------
Q 036490 317 ----KTDNNRIAKACGAVIVN-----RPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPK----------------- 370 (557)
Q Consensus 317 ----~~~le~Ia~~tGa~iis-----~~~~l~~~~lG~~~~~v~~~~ig~~~~~~l~~~~~~~----------------- 370 (557)
+++|+||+.+||+++++ +++++++++||+ |+.+++.. ++++++++|.++.
T Consensus 281 ~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~-~~~v~~~~---~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~ 356 (542)
T PRK00013 281 GDRRKAMLEDIAILTGGTVISEELGLKLEDATLEDLGQ-AKKVVVTK---DNTTIVDGAGDKEAIKARVAQIKAQIEETT 356 (542)
T ss_pred ccchhhhHHHHHHHcCCEEecccccCCcccCCHHHCCe-eeEEEEec---CEEEEEeCCCCHHHHHHHHHHHHHHHhhcC
Confidence 88999999999999999 799999999999 99999875 8899999887654
Q ss_pred ------------------eEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHhCCccccCCCchHHHHHHHHHHhhccCCCc
Q 036490 371 ------------------ACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGI 432 (557)
Q Consensus 371 ------------------~~TIll~G~t~~~l~e~~~~l~dal~~~~~~l~~g~vvpGGG~~e~~l~~~L~~~~~~~~~~ 432 (557)
.+||+|||+|+.+++|++|+++||++++++++++| +|||||++|++++.+|+++ ...+++
T Consensus 357 ~~~~~~~l~eRi~~l~g~~~tI~irG~t~~~l~E~er~i~Dal~~vk~al~~g-~VpGGGa~e~~~s~~L~~~-~~~~~~ 434 (542)
T PRK00013 357 SDYDREKLQERLAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEG-IVPGGGVALLRAAPALEAL-KGLNGD 434 (542)
T ss_pred CHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cccCcHHHHHHHHHHHHHh-cCCChH
Confidence 78999999999999999999999999999999998 9999999999999999988 678889
Q ss_pred hhHHHHHHHHHhhhhHHHHHHhcCCCHHHHHHHHHHHhhCCCCceEEEeCCCCcccccccCccccchHHHHHHHHHHHHH
Q 036490 433 EKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEA 512 (557)
Q Consensus 433 ~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~~~~~~~~~~Gid~~~g~i~d~~~~gi~dp~~vk~~~l~~A~e~ 512 (557)
+|+++++|++||+.||++|++|||+|+.+++.+|+..| ++++|||+.+|++.||++.|||||+.||.++|+.|+++
T Consensus 435 ~~~~i~~~a~Al~~ip~~La~NaG~d~~~vl~~l~~~~----~~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~ 510 (542)
T PRK00013 435 EATGINIVLRALEAPLRQIAENAGLEGSVVVEKVKNGK----GKGYGYNAATGEYVDMIEAGIIDPTKVTRSALQNAASV 510 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhc----CCCEeEeCCCCceeehhhccCeecHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999877 26899999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhcCCc
Q 036490 513 ACMLLRIDDIVSGIK 527 (557)
Q Consensus 513 a~~lL~id~ii~~~~ 527 (557)
|++||+||++|...|
T Consensus 511 a~~iL~id~iI~~~~ 525 (542)
T PRK00013 511 AGLLLTTEAVVADKP 525 (542)
T ss_pred HHHHHHHHHHHhcCC
Confidence 999999999998765
No 29
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=5.5e-89 Score=736.81 Aligned_cols=461 Identities=21% Similarity=0.325 Sum_probs=423.8
Q ss_pred cccchHHHHHHHHHHHHHHHHhhhcCCcccccceeecCCCCEEEeccHHHHhhhccccCh----HHHHHHHHHHhhhhhc
Q 036490 14 RESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHP----AAKSMIELSRTQDEEV 89 (557)
Q Consensus 14 ~~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iT~DG~tIl~~l~~~hP----~a~ll~~~~~~~~~~~ 89 (557)
..++.+++..|++|++.++++|++||||+||+|||+++.|+++|||||+|||++|+++|| +|++++++|++|++++
T Consensus 6 ~~~~~~a~~~~~~~~~~la~~v~tTlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~~~a~~qd~e~ 85 (541)
T PRK12851 6 VKFHVEAREKMLRGVNILADAVKVTLGPKGRNVVIDKSFGAPTITNDGVTIAKEIELEDKFENMGAQMVREVASKTNDVA 85 (541)
T ss_pred ecccHHHHHHHHHHHHHHHHHHhcCCCCCCCCEEEECCCCCeeEecCHHHHHHHccCCCchhhHHHHHHHHHHHhhhHhh
Confidence 456789999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhccccCCCCcHHHHHHHHHHhhhccccchhHHH
Q 036490 90 GDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAMPIDANDRATVLGLVKSCIGTKFTSQFGDL 169 (557)
Q Consensus 90 GDGttt~viL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~i~~~~~~~l~~va~t~l~sk~~~~~~~~ 169 (557)
||||||+++|+++||+++.+++++|+||..|++||+.|++.++++|+++++|++ +.+.+.+++++++ ++++.
T Consensus 86 GDGTTtvviLa~~LL~~a~~li~~Gihp~~I~~G~~~a~~~~~~~L~~~s~~~~--~~~~l~~va~~s~------~~~~~ 157 (541)
T PRK12851 86 GDGTTTATVLAQAIVREGAKAVAAGANPMDLKRGIDRAVAAVVEELKANARPVT--TNAEIAQVATISA------NGDAE 157 (541)
T ss_pred CCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCC--CHHHHHHHHHHhc------cChHH
Confidence 999999999999999999999999999999999999999999999999999987 6778999998864 47899
Q ss_pred HHHHHHHHHhhcccccCCCccccCcccceEEEEecCCCCCCcEEEEeEEEeccccCCC------CCcccccCceEEEEec
Q 036490 170 LADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPG------KMRRKIVNPRIILLDS 243 (557)
Q Consensus 170 ls~lv~~a~~~v~~~~~~g~~~~d~~~~I~I~~i~G~~~~~S~li~Givl~~~~~~~~------~~~~~~~n~~Ill~~~ 243 (557)
+++++++|+..++. ++. +.|.+.. +...++++++|++|++++.+|. +|+++++||+|+++|+
T Consensus 158 l~~lv~~Av~~vg~---~g~--------i~i~~~~-~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~Ilv~d~ 225 (541)
T PRK12851 158 IGRLVAEAMEKVGN---EGV--------ITVEESK-TAETELEVVEGMQFDRGYLSPYFVTDADKMEAELEDPYILIHEK 225 (541)
T ss_pred HHHHHHHHHHHhcc---cCc--------eEEEEcc-CCCcceEEEEEEEecCCccccccccCCCCCeEEecccEEEEEcC
Confidence 99999999999974 232 5565555 4557899999999999999873 4899999999999999
Q ss_pred ccccccccccceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCC------eeEec---
Q 036490 244 PLEYKKGENQTNAELVKEEDWGVMLKIEEDYIENLCMQIVKFKPDLVITEKGLSDLACHYLSKAGV------SAIRR--- 314 (557)
Q Consensus 244 ~Le~~k~~~~~~~~i~~~~~l~~~~~~E~~~i~~~v~~i~~~~~~lIi~~~~i~~~al~~L~~~~I------~~v~~--- 314 (557)
+++ +.++ +.++++.+.+.+++|||++++|++.++++|..++| +++++
T Consensus 226 ~i~-------------~~~~-----------i~~~l~~i~~~~~~lvi~~~~I~~~al~~l~~n~i~g~~~i~av~~p~~ 281 (541)
T PRK12851 226 KIS-------------NLQD-----------LLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGF 281 (541)
T ss_pred CcC-------------cHHH-----------HHHHHHHHHHhCcCEEEECCCCChHHHHHHHHcCCcCceeEEEEecCcc
Confidence 854 2222 45788999999999999999999999999999997 77775
Q ss_pred --CChhHHHHHHHHhCCcccc-----CCCCCCCCCcCCccceEEEEEECceEEEEEEecCCC------------------
Q 036490 315 --LRKTDNNRIAKACGAVIVN-----RPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDP------------------ 369 (557)
Q Consensus 315 --v~~~~le~Ia~~tGa~iis-----~~~~l~~~~lG~~~~~v~~~~ig~~~~~~l~~~~~~------------------ 369 (557)
+++++|+||+.+|||++++ +++++++++||+ |+.|++.+ ++++++.+|.++
T Consensus 282 ~~~~~~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~-~~~v~~~~---~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~ 357 (541)
T PRK12851 282 GDRRKAMLEDIAILTGGTVISEDLGIKLENVTLEQLGR-AKKVVVEK---ENTTIIDGAGSKTEIEGRVAQIRAQIEETT 357 (541)
T ss_pred ccccHhHHHHHHHHhCCEEeccCCCCCcCcCCHHHcCC-ccEEEEEc---ceEEEEcCCCCHHHHHHHHHHHHHHHHhcC
Confidence 8999999999999999999 688898889999 99999887 888999988664
Q ss_pred -----------------CeEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHhCCccccCCCchHHHHHHHHHHhhccCCCc
Q 036490 370 -----------------KACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGI 432 (557)
Q Consensus 370 -----------------~~~TIll~G~t~~~l~e~~~~l~dal~~~~~~l~~g~vvpGGG~~e~~l~~~L~~~~~~~~~~ 432 (557)
.++||+|||+|+.+++|++|+++||++++++++++| +|||||++|++++.+|++++.. +++
T Consensus 358 ~~~~~~~l~~ri~~l~g~~~tI~irG~t~~~l~E~er~i~DAl~a~~~al~~g-~VpGGGa~e~~~s~~L~~~~~~-~~~ 435 (541)
T PRK12851 358 SDYDREKLQERLAKLAGGVAVIRVGASTEVEVKEKKDRVDDALHATRAAVEEG-IVPGGGVALLRAVKALDKLETA-NGD 435 (541)
T ss_pred CHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cccCchHHHHHHHHHHHHHhcC-CcH
Confidence 388999999999999999999999999999999998 9999999999999999988765 889
Q ss_pred hhHHHHHHHHHhhhhHHHHHHhcCCCHHHHHHHHHHHhhCCCCceEEEeCCCCcccccccCccccchHHHHHHHHHHHHH
Q 036490 433 EKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEA 512 (557)
Q Consensus 433 ~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~~~~~~~~~~Gid~~~g~i~d~~~~gi~dp~~vk~~~l~~A~e~ 512 (557)
+|+++++|++||+.||++|++|||+|+.+++.+|+..| .++|||+.+|++.||++.|||||+.||.++|+.|+|+
T Consensus 436 ~~~~~~~~a~AL~~ip~~La~NaG~d~~~vl~~l~~~~-----~~~G~d~~~g~~~d~~~~GIiDp~~vk~~al~~A~e~ 510 (541)
T PRK12851 436 QRTGVEIVRRALEAPVRQIAENAGAEGSVVVGKLREKP-----GGYGFNAATNEYGDLYAQGVIDPVKVVRTALQNAASV 510 (541)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhC-----CCeeeeCCCCCccchhhccCEecHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998876 5799999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhcCCccC
Q 036490 513 ACMLLRIDDIVSGIKKK 529 (557)
Q Consensus 513 a~~lL~id~ii~~~~~~ 529 (557)
|++||+||++|...|++
T Consensus 511 A~~iL~id~iI~~~~~~ 527 (541)
T PRK12851 511 AGLLLTTEAMVAEKPKK 527 (541)
T ss_pred HHHHHhHHHhhhcCCCC
Confidence 99999999999886643
No 30
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=2.3e-88 Score=732.40 Aligned_cols=461 Identities=21% Similarity=0.329 Sum_probs=420.6
Q ss_pred cccchHHHHHHHHHHHHHHHHhhhcCCcccccceeecCCCCEEEeccHHHHhhhccccChH----HHHHHHHHHhhhhhc
Q 036490 14 RESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPA----AKSMIELSRTQDEEV 89 (557)
Q Consensus 14 ~~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iT~DG~tIl~~l~~~hP~----a~ll~~~~~~~~~~~ 89 (557)
-.++.+++..|++||..+++++++||||+||+|||+++.|+++|||||+|||++|+++||+ ++|++++|++|++++
T Consensus 6 ~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~G~~~ITnDG~tIlk~i~i~hp~~~~ga~ll~~~a~~qd~e~ 85 (544)
T PRK12850 6 IRFSTDARDRLLRGVNILANAVKVTLGPKGRNVVLEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVKEVASKTNDLA 85 (544)
T ss_pred ecccHHHHHHHHHHHHHHHHHHhCCcCCCCCCEEEECCCCCeeEeccHHHHHHHhcCCChhhhHHHHHHHHHHhhhcchh
Confidence 4568899999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhccccCCCCcHHHHHHHHHHhhhccccchhHHH
Q 036490 90 GDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAMPIDANDRATVLGLVKSCIGTKFTSQFGDL 169 (557)
Q Consensus 90 GDGttt~viL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~i~~~~~~~l~~va~t~l~sk~~~~~~~~ 169 (557)
||||||+++|+++||+++.+++++|+||..|++||+.|++.++++|++++.+++ +.+.|.++++++++ .++.
T Consensus 86 GDGTTt~viLa~~LL~~a~~li~~GihP~~I~~G~~~a~~~~~~~L~~~s~~v~--~~~~l~~va~~s~~------~~~~ 157 (544)
T PRK12850 86 GDGTTTATVLAQAIVREGAKLVAAGMNPMDLKRGIDLAVAAVVDELKKIAKKVT--SSKEIAQVATISAN------GDES 157 (544)
T ss_pred cCCcchHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHhccCCC--CHHHHHHHHHHhcC------CHHH
Confidence 999999999999999999999999999999999999999999999999999987 67889999998754 3789
Q ss_pred HHHHHHHHHhhcccccCCCccccCcccceEEEEecCCCCCCcEEEEeEEEeccccCCC------CCcccccCceEEEEec
Q 036490 170 LADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPG------KMRRKIVNPRIILLDS 243 (557)
Q Consensus 170 ls~lv~~a~~~v~~~~~~g~~~~d~~~~I~I~~i~G~~~~~S~li~Givl~~~~~~~~------~~~~~~~n~~Ill~~~ 243 (557)
+++++++|+..++. +|. +|+ ...+..| .++++++|++|++++.+|. +|++.++||+|+++|+
T Consensus 158 l~~lv~eAv~~vg~---~g~--i~v----~~~~~~g---~~~~~v~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~ 225 (544)
T PRK12850 158 IGEMIAEAMDKVGK---EGV--ITV----EEAKTLG---TELDVVEGMQFDRGYLSPYFVTNPEKMRAELEDPYILLHEK 225 (544)
T ss_pred HHHHHHHHHHHhcc---cCc--eee----EEccccC---cceEEEEeEEecCccCcCccccccccCeEEEeCCEEEEEec
Confidence 99999999999974 332 332 2222223 6889999999999999872 2588999999999999
Q ss_pred ccccccccccceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCC------eeEec---
Q 036490 244 PLEYKKGENQTNAELVKEEDWGVMLKIEEDYIENLCMQIVKFKPDLVITEKGLSDLACHYLSKAGV------SAIRR--- 314 (557)
Q Consensus 244 ~Le~~k~~~~~~~~i~~~~~l~~~~~~E~~~i~~~v~~i~~~~~~lIi~~~~i~~~al~~L~~~~I------~~v~~--- 314 (557)
.++ +.++ +.++++.+.+.|++|||++++|++.++++|..++| +++++
T Consensus 226 ~i~-------------~~~~-----------i~~~l~~i~~~g~~lvI~~~~I~d~al~~l~~n~i~~~~~~~avk~p~~ 281 (544)
T PRK12850 226 KIS-------------NLQD-----------LLPILEAVVQSGRPLLIIAEDVEGEALATLVVNKLRGGLKSVAVKAPGF 281 (544)
T ss_pred ccC-------------CHHH-----------HHHHHHHHHHhCCCEEEECCCCChHHHHHHHHcCCcccceEEEEeCCCc
Confidence 753 2222 55788999999999999999999999999999999 88876
Q ss_pred --CChhHHHHHHHHhCCcccc-----CCCCCCCCCcCCccceEEEEEECceEEEEEEecCCC------------------
Q 036490 315 --LRKTDNNRIAKACGAVIVN-----RPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDP------------------ 369 (557)
Q Consensus 315 --v~~~~le~Ia~~tGa~iis-----~~~~l~~~~lG~~~~~v~~~~ig~~~~~~l~~~~~~------------------ 369 (557)
+++++|+||+.+||+++++ +++++++++||+ |+.+++.+ ++++++++|.++
T Consensus 282 g~~~~~~le~ia~~tG~~~i~~~~~~~~~~~~~~~LG~-~~~v~~~~---~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~ 357 (544)
T PRK12850 282 GDRRKAMLEDIAVLTGGQVISEDLGIKLENVTLDMLGR-AKRVLITK---ENTTIIDGAGDKKNIEARVKQIRAQIEETT 357 (544)
T ss_pred CcccHHHHHHHHHHhCCEEeccccCCCcccCCHHHcCC-CcEEEEEe---eeEEEEeCCCCHHHHHHHHHHHHHHHHhcc
Confidence 8899999999999999999 789999889999 99999876 788999988764
Q ss_pred -----------------CeEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHhCCccccCCCchHHHHHHHHHHhhccCCCc
Q 036490 370 -----------------KACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGI 432 (557)
Q Consensus 370 -----------------~~~TIll~G~t~~~l~e~~~~l~dal~~~~~~l~~g~vvpGGG~~e~~l~~~L~~~~~~~~~~ 432 (557)
+.+||+|||+|+.+++|++|+++||++++++++++| +|||||++|++++..|+++ ...+++
T Consensus 358 ~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~~~k~a~~~g-~VpGGGa~e~~~s~~L~~~-~~~~~~ 435 (544)
T PRK12850 358 SDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVDDALHATRAAVEEG-IVPGGGVALLRARSALRGL-KGANAD 435 (544)
T ss_pred cHHHHHHHHHHHHHhcCCeEEEEECCCcHHHHHHHHHHHHHHHHHHHHHHhcC-CccCCcHHHHHHHHHHHhc-cCCChH
Confidence 489999999999999999999999999999999997 9999999999999999988 677889
Q ss_pred hhHHHHHHHHHhhhhHHHHHHhcCCCHHHHHHHHHHHhhCCCCceEEEeCCCCcccccccCccccchHHHHHHHHHHHHH
Q 036490 433 EKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEA 512 (557)
Q Consensus 433 ~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~~~~~~~~~~Gid~~~g~i~d~~~~gi~dp~~vk~~~l~~A~e~ 512 (557)
+|+++++|++||+.||++|++|||+|+.+++.+|+..| .++|+|+.+|++.||++.|||||+.||.++|+.|+++
T Consensus 436 ~~~~i~~~a~Al~~ip~~La~NaG~d~~~v~~~l~~~~-----~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~ 510 (544)
T PRK12850 436 ETAGIDIVRRALEEPLRQIATNAGFEGSVVVGKVAELP-----GNFGFNAQTGEYGDMVEAGIIDPAKVTRTALQDAASI 510 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhC-----CCcceeCCCCcccchhhccCcccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998876 5789999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhcCCccC
Q 036490 513 ACMLLRIDDIVSGIKKK 529 (557)
Q Consensus 513 a~~lL~id~ii~~~~~~ 529 (557)
|++||++|++|...|.+
T Consensus 511 a~~iL~id~iI~~~~~~ 527 (544)
T PRK12850 511 AALLITTEAMVAEAPKK 527 (544)
T ss_pred HHHHHhHHHhhccCCCC
Confidence 99999999999887653
No 31
>PTZ00114 Heat shock protein 60; Provisional
Probab=100.00 E-value=3.7e-88 Score=733.31 Aligned_cols=463 Identities=22% Similarity=0.331 Sum_probs=423.7
Q ss_pred ccccchHHHHHHHHHHHHHHHHhhhcCCcccccceeecCCCCEEEeccHHHHhhhccccCh----HHHHHHHHHHhhhhh
Q 036490 13 KRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHP----AAKSMIELSRTQDEE 88 (557)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iT~DG~tIl~~l~~~hP----~a~ll~~~~~~~~~~ 88 (557)
...+|++++..|++||..++++|++||||+||+|||+++.|+++|||||+||+++++++|| +|+|++++|++|+++
T Consensus 16 ~~~~~~~a~~~~i~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~ITnDG~TIlk~i~~~~p~~~~~a~ll~~~a~~qd~e 95 (555)
T PTZ00114 16 EIRFGDEARQSLLKGIERLADAVAVTLGPKGRNVIIEQEYGSPKITKDGVTVAKAIEFSDRFENVGAQLIRQVASKTNDK 95 (555)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhccCCCCCCcEEEECCCCCeEEeeChHHHHHhcCcCCcchhHHHHHHHHHHHhhccc
Confidence 4678899999999999999999999999999999999999999999999999999999998 999999999999999
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhccccCCCCcHHHHHHHHHHhhhccccchhHH
Q 036490 89 VGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAMPIDANDRATVLGLVKSCIGTKFTSQFGD 168 (557)
Q Consensus 89 ~GDGttt~viL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~i~~~~~~~l~~va~t~l~sk~~~~~~~ 168 (557)
+||||||+|+|+++||+++.+++++|+||..|++||+.|.+.++++|+++++|++ +.+.+.++|+|+++ +++
T Consensus 96 vGDGTTtvvvLa~~LL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~v~--~~~~l~~va~ts~~------~~~ 167 (555)
T PTZ00114 96 AGDGTTTATILARAIFREGCKAVAAGLNPMDLKRGIDLAVKVVLESLKEQSRPVK--TKEDILNVATISAN------GDV 167 (555)
T ss_pred cCCcccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCC--CHHHHHHHHHHHcC------ChH
Confidence 9999999999999999999999999999999999999999999999999999996 67889999998854 468
Q ss_pred HHHHHHHHHHhhcccccCCCccccCcccceEEEEecCCCCCCc-EEEEeEEEeccccCCC------CCcccccCceEEEE
Q 036490 169 LLADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDS-RVLKGVMFNKDVVAPG------KMRRKIVNPRIILL 241 (557)
Q Consensus 169 ~ls~lv~~a~~~v~~~~~~g~~~~d~~~~I~I~~i~G~~~~~S-~li~Givl~~~~~~~~------~~~~~~~n~~Ill~ 241 (557)
.+++++++|+..++. +|. |.+..|++.+++ ++++|++|++++.+|. .|++.++||+|+++
T Consensus 168 ~l~~li~eAv~~vg~---~g~----------I~~~~g~~~~ds~~~v~G~~~~~g~~~~~~~~~~~~~~~~l~~~~Ili~ 234 (555)
T PTZ00114 168 EIGSLIADAMDKVGK---DGT----------ITVEDGKTLEDELEVVEGMSFDRGYISPYFVTNEKTQKVELENPLILVT 234 (555)
T ss_pred HHHHHHHHHHHHhCc---CCc----------EEEcCCCCccceEEEEEEEEEeccccccccccccccCeEEecCCEEEEE
Confidence 899999999999974 231 455679999998 7999999999999872 35889999999999
Q ss_pred ecccccccccccceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcC------CeeEec-
Q 036490 242 DSPLEYKKGENQTNAELVKEEDWGVMLKIEEDYIENLCMQIVKFKPDLVITEKGLSDLACHYLSKAG------VSAIRR- 314 (557)
Q Consensus 242 ~~~Le~~k~~~~~~~~i~~~~~l~~~~~~E~~~i~~~v~~i~~~~~~lIi~~~~i~~~al~~L~~~~------I~~v~~- 314 (557)
|++|+ +.++ +.++++.+.+.+++|+|++++|++.++++|..++ |+++++
T Consensus 235 d~~L~-------------~~~~-----------i~~~le~i~~~~~~llI~~~~i~~~al~~L~~n~~~g~~~i~avk~~ 290 (555)
T PTZ00114 235 DKKIS-------------SIQS-----------ILPILEHAVKNKRPLLIIAEDVEGEALQTLIINKLRGGLKVCAVKAP 290 (555)
T ss_pred cCCCC-------------CHHH-----------HHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhCCCCceEEEEEecC
Confidence 99987 2233 4477889999999999999999999999999886 888866
Q ss_pred ----CChhHHHHHHHHhCCccccCC------CCCCCCCcCCccceEEEEEECceEEEEEEecC-----------------
Q 036490 315 ----LRKTDNNRIAKACGAVIVNRP------DELQESDVGTGAGLFEVKKIGDEFFAFIVDCK----------------- 367 (557)
Q Consensus 315 ----v~~~~le~Ia~~tGa~iis~~------~~l~~~~lG~~~~~v~~~~ig~~~~~~l~~~~----------------- 367 (557)
+++++|+||+.+||++++++. ++++++++|+ |+.|++.+ ++++++.+|.
T Consensus 291 ~~g~~~~~~l~~la~~tG~~~i~~~~~~~~l~~~~~~~LG~-a~~v~~~~---~~~~~~~~~~~~~~i~~r~~~l~~~~~ 366 (555)
T PTZ00114 291 GFGDNRKDILQDIAVLTGATVVSEDNVGLKLDDFDPSMLGS-AKKVTVTK---DETVILTGGGDKAEIKERVELLRSQIE 366 (555)
T ss_pred CCCcchHHHHHHHHHHhCCEEecccccccCcccCCHHHcCC-CceEEEEe---ceEEEEeCCCcHHHHHHHHHHHHHHHH
Confidence 778999999999999999997 7788888999 99999988 4566666654
Q ss_pred ------------------CCCeEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHhCCccccCCCchHHHHHHHHHHhhc--
Q 036490 368 ------------------DPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSS-- 427 (557)
Q Consensus 368 ------------------~~~~~TIll~G~t~~~l~e~~~~l~dal~~~~~~l~~g~vvpGGG~~e~~l~~~L~~~~~-- 427 (557)
+++++||+|||+|+.+++|++|+++||++++++++++| +|||||++|++|+.+|++++.
T Consensus 367 ~~~~~~~~~~l~eR~~~l~~~~~tI~i~G~t~~~l~E~~r~i~Dal~~~k~a~~~g-vVpGGGa~e~~~s~~L~~~~~~~ 445 (555)
T PTZ00114 367 RTTSEYDKEKLKERLAKLSGGVAVIKVGGASEVEVNEKKDRIEDALNATRAAVEEG-IVPGGGVALLRASKLLDKLEEDN 445 (555)
T ss_pred hcCCHHHHHHHHHHHHhcCCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcC-cccCCcHHHHHHHHHHHHHhhcc
Confidence 67899999999999999999999999999999999988 999999999999999998875
Q ss_pred cCCCchhHHHHHHHHHhhhhHHHHHHhcCCCHHHHHHHHHHHhhCCCCceEEEeCCCCcccccccCccccchHHHHHHHH
Q 036490 428 SIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFK 507 (557)
Q Consensus 428 ~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~~~~~~~~~~Gid~~~g~i~d~~~~gi~dp~~vk~~~l~ 507 (557)
..++++|+++++|++||+.||++|++|||+|+.+++.+|+. .+ ++++|||+.+|++.||++.|||||+.||.++|+
T Consensus 446 ~~~~~~~~~i~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~---~~-~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~ 521 (555)
T PTZ00114 446 ELTPDQRTGVKIVRNALRLPTKQIAENAGVEGAVVVEKILE---KK-DPSFGYDAQTGEYVNMFEAGIIDPTKVVRSALV 521 (555)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh---cC-CCCEeEeCCCCcEeeHHhCCCEeCHHHHHHHHH
Confidence 57789999999999999999999999999999999999976 23 367999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhcCCccC
Q 036490 508 TAIEAACMLLRIDDIVSGIKKK 529 (557)
Q Consensus 508 ~A~e~a~~lL~id~ii~~~~~~ 529 (557)
.|+++|++||+||++|...+.+
T Consensus 522 ~A~~~A~~iL~id~iI~~~~~~ 543 (555)
T PTZ00114 522 DAASVASLMLTTEAAIVDLPKE 543 (555)
T ss_pred HHHHHHHHHHhHHHHHHhCCcc
Confidence 9999999999999999886654
No 32
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=9.2e-88 Score=724.93 Aligned_cols=455 Identities=25% Similarity=0.372 Sum_probs=420.6
Q ss_pred cccchHHHHHHHHHHHHHHHHhhhcCCcccccceeecCCCCEEEeccHHHHhhhccccCh----HHHHHHHHHHhhhhhc
Q 036490 14 RESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHP----AAKSMIELSRTQDEEV 89 (557)
Q Consensus 14 ~~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iT~DG~tIl~~l~~~hP----~a~ll~~~~~~~~~~~ 89 (557)
-.+|.+++..|++||+.+++++++||||+||+|||+++.|+++|||||+||+++++++|| +++++++++++|++++
T Consensus 3 ~~~g~~a~~~~i~~~~~l~~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~a~ll~~~a~~qd~e~ 82 (520)
T cd03344 3 IKFGEEARKALLRGVNKLADAVKVTLGPKGRNVVIEKSFGSPKITKDGVTVAKEIELEDPFENMGAQLVKEVASKTNDVA 82 (520)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhCCcCCCCCcEEEECCCCCeEEEecHHHHHHHcccCCcchhHHHHHHHHHHhhhcccc
Confidence 357889999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhccccCCCCcHHHHHHHHHHhhhccccchhHHH
Q 036490 90 GDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAMPIDANDRATVLGLVKSCIGTKFTSQFGDL 169 (557)
Q Consensus 90 GDGttt~viL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~i~~~~~~~l~~va~t~l~sk~~~~~~~~ 169 (557)
||||||+++|+++||+++.+++++|+||..|++||+.|.+.++++|+++++|++ +.+.+.++|+|+++ .+++
T Consensus 83 GDGTTtvviLa~~Ll~~~~~li~~gi~p~~I~~G~~~a~~~~~~~L~~~~~~i~--~~~~l~~va~ts~~------~~~~ 154 (520)
T cd03344 83 GDGTTTATVLARAIIKEGLKAVAAGANPMDLKRGIEKAVEAVVEELKKLSKPVK--TKEEIAQVATISAN------GDEE 154 (520)
T ss_pred CCCcchHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHhccCCC--CHHHHHHHHHHhcC------ChHH
Confidence 999999999999999999999999999999999999999999999999999997 78899999999875 3789
Q ss_pred HHHHHHHHHhhcccccCCCccccCcccceEEEEecCCCCCC-cEEEEeEEEeccccCCC------CCcccccCceEEEEe
Q 036490 170 LADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLED-SRVLKGVMFNKDVVAPG------KMRRKIVNPRIILLD 242 (557)
Q Consensus 170 ls~lv~~a~~~v~~~~~~g~~~~d~~~~I~I~~i~G~~~~~-S~li~Givl~~~~~~~~------~~~~~~~n~~Ill~~ 242 (557)
+++++++|+..++. ++ .|.+ ..|++..| +++++|++|++++.+|. .|++.++||+|+++|
T Consensus 155 l~~lv~~A~~~v~~---~~--------~i~v--~~g~~~~d~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d 221 (520)
T cd03344 155 IGELIAEAMEKVGK---DG--------VITV--EEGKTLETELEVVEGMQFDRGYLSPYFVTDPEKMEVELENPYILLTD 221 (520)
T ss_pred HHHHHHHHHHHhcc---CC--------cEEE--EeCCCcceeEEEEeeEEecCCCCCCccccCcccCeEEeeCCEEEEEC
Confidence 99999999999874 23 2445 46888888 79999999999998872 244689999999999
Q ss_pred cccccccccccceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCC------eeEecC-
Q 036490 243 SPLEYKKGENQTNAELVKEEDWGVMLKIEEDYIENLCMQIVKFKPDLVITEKGLSDLACHYLSKAGV------SAIRRL- 315 (557)
Q Consensus 243 ~~Le~~k~~~~~~~~i~~~~~l~~~~~~E~~~i~~~v~~i~~~~~~lIi~~~~i~~~al~~L~~~~I------~~v~~v- 315 (557)
++++ +.+++. ++++.+.+.|++|||++++|++.++++|.++|+ +++++.
T Consensus 222 ~~l~-------------~~~~l~-----------~~l~~i~~~~~~lvi~~~~i~~~al~~l~~~~i~~~~~v~avk~~~ 277 (520)
T cd03344 222 KKIS-------------SIQELL-----------PILELVAKAGRPLLIIAEDVEGEALATLVVNKLRGGLKVCAVKAPG 277 (520)
T ss_pred CCCC-------------CHHHHH-----------HHHHHHHhhCCCEEEEcCCCCHHHHHHHHHcCCccCceEEEEeCCC
Confidence 9964 344443 577899999999999999999999999999998 777655
Q ss_pred ----ChhHHHHHHHHhCCcccc-----CCCCCCCCCcCCccceEEEEEECceEEEEEEecCCC-----------------
Q 036490 316 ----RKTDNNRIAKACGAVIVN-----RPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDP----------------- 369 (557)
Q Consensus 316 ----~~~~le~Ia~~tGa~iis-----~~~~l~~~~lG~~~~~v~~~~ig~~~~~~l~~~~~~----------------- 369 (557)
++++|+||+.+|||++++ ++++++++++|+ |+.+++.+ ++++++++|..+
T Consensus 278 ~~~~~~~~l~~la~~tGa~~~~~~~~~~~~~~~~~~LG~-~~~v~~~~---~~~~~i~~~~~~~~i~~ri~~l~~~~~~~ 353 (520)
T cd03344 278 FGDRRKAMLEDIAILTGGTVISEELGLKLEDVTLEDLGR-AKKVVVTK---DDTTIIGGAGDKAAIKARIAQIRKQIEET 353 (520)
T ss_pred CCcccHHHHHHHHHHhCCEEecccccCCcccCCHHHCCc-ceEEEEee---ceEEEEeCCCCHHHHHHHHHHHHHHHHhc
Confidence 889999999999999999 788998889999 99999877 788899988664
Q ss_pred ------------------CeEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHhCCccccCCCchHHHHHHHHHHhhccCCC
Q 036490 370 ------------------KACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEG 431 (557)
Q Consensus 370 ------------------~~~TIll~G~t~~~l~e~~~~l~dal~~~~~~l~~g~vvpGGG~~e~~l~~~L~~~~~~~~~ 431 (557)
+.|||+|||+|+.+++|++|+++||++++++++++| +|||||++|++++.+|++++. .++
T Consensus 354 ~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~~r~i~Dal~~~k~a~~~g-~VpGGGa~e~~~s~~L~~~~~-~~~ 431 (520)
T cd03344 354 TSDYDKEKLQERLAKLSGGVAVIKVGGATEVELKEKKDRVEDALNATRAAVEEG-IVPGGGVALLRASPALDKLKA-LNG 431 (520)
T ss_pred CCHHHHHHHHHHHHHhcCCeEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHhcC-CCcCCcHHHHHHHHHHHHhcc-CCh
Confidence 599999999999999999999999999999999998 999999999999999999887 889
Q ss_pred chhHHHHHHHHHhhhhHHHHHHhcCCCHHHHHHHHHHHhhCCCCceEEEeCCCCcccccccCccccchHHHHHHHHHHHH
Q 036490 432 IEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIE 511 (557)
Q Consensus 432 ~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~~~~~~~~~~Gid~~~g~i~d~~~~gi~dp~~vk~~~l~~A~e 511 (557)
++|+++++|++||+.||++|++|||+|+.+++++|+..| .++|||+.+|++.||++.|||||+.||.++|+.|++
T Consensus 432 ~~~~~~~~~a~Al~~ip~~La~NaG~d~~~vi~~l~~~~-----~~~G~d~~~g~~~d~~~~gV~Dp~~vk~~~l~~A~~ 506 (520)
T cd03344 432 DEKLGIEIVRRALEAPLRQIAENAGVDGSVVVEKVLESP-----DGFGYDAATGEYVDMIEAGIIDPTKVVRSALQNAAS 506 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhc-----CCEeEECCCCcccchHhccCeecHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999877 379999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhc
Q 036490 512 AACMLLRIDDIVS 524 (557)
Q Consensus 512 ~a~~lL~id~ii~ 524 (557)
+|++||++|.+|.
T Consensus 507 ~a~~iL~id~~i~ 519 (520)
T cd03344 507 VASLLLTTEALVV 519 (520)
T ss_pred HHHHHHhhheEEe
Confidence 9999999999875
No 33
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1.9e-87 Score=727.23 Aligned_cols=461 Identities=20% Similarity=0.296 Sum_probs=420.9
Q ss_pred cccchHHHHHHHHHHHHHHHHhhhcCCcccccceeecCCCCEEEeccHHHHhhhccc----cChHHHHHHHHHHhhhhhc
Q 036490 14 RESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDV----AHPAAKSMIELSRTQDEEV 89 (557)
Q Consensus 14 ~~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iT~DG~tIl~~l~~----~hP~a~ll~~~~~~~~~~~ 89 (557)
..+|.+++..|++|+..++++|++||||+||+|||+++.|+++|||||+|||++|++ +||+|+|+++++++|++++
T Consensus 6 ~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~iTnDG~TIlk~i~~~~~~~~p~akll~e~a~~q~~e~ 85 (545)
T PRK12852 6 VKFSGDARDRMLRGVDILANAVKVTLGPKGRNVVIEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKTNDLA 85 (545)
T ss_pred hhccHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEECCCCCeeEeccHHHHHHHccCCCcccChHHHHHHHHHhhcCcee
Confidence 456789999999999999999999999999999999999999999999999999999 4999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhccccCCCCcHHHHHHHHHHhhhccccchhHHH
Q 036490 90 GDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAMPIDANDRATVLGLVKSCIGTKFTSQFGDL 169 (557)
Q Consensus 90 GDGttt~viL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~i~~~~~~~l~~va~t~l~sk~~~~~~~~ 169 (557)
||||||+++|+++||+++.+++++|+||..|++||+.|++.++++|+++++|++ +.+.+.++++++.+ .++.
T Consensus 86 GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~--~~~~l~~va~~s~~------~~~~ 157 (545)
T PRK12852 86 GDGTTTATVLAQAIVREGAKAVAAGMNPMDLKRGIDIAVAAVVKDIEKRAKPVA--SSAEIAQVGTISAN------GDAA 157 (545)
T ss_pred cCCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCC--CHHHHHHHHhhhcC------ChHH
Confidence 999999999999999999999999999999999999999999999999999987 45669999988753 3689
Q ss_pred HHHHHHHHHhhcccccCCCccccCcccceEEEEecCCCC-CCcEEEEeEEEeccccCCC------CCcccccCceEEEEe
Q 036490 170 LADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQL-EDSRVLKGVMFNKDVVAPG------KMRRKIVNPRIILLD 242 (557)
Q Consensus 170 ls~lv~~a~~~v~~~~~~g~~~~d~~~~I~I~~i~G~~~-~~S~li~Givl~~~~~~~~------~~~~~~~n~~Ill~~ 242 (557)
+++++++|+.+++. ++. |.+.. |+.. .++++++|++|++++.+|. .|+..++||+|++++
T Consensus 158 l~~li~eA~~~vg~---~g~--------i~v~~--g~~~~~~~~~v~G~~~~~g~~~p~~v~~~~~~~~~l~n~~Ili~d 224 (545)
T PRK12852 158 IGKMIAQAMQKVGN---EGV--------ITVEE--NKSLETEVDIVEGMKFDRGYLSPYFVTNAEKMTVELDDAYILLHE 224 (545)
T ss_pred HHHHHHHHHHHhcc---CCc--------eeeec--CCCcceEEEEEEeEEecCCccCCccccccccceEEecCceEEEec
Confidence 99999999999975 342 44443 6665 6999999999999999873 488999999999999
Q ss_pred cccccccccccceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHc------CCeeEecCC
Q 036490 243 SPLEYKKGENQTNAELVKEEDWGVMLKIEEDYIENLCMQIVKFKPDLVITEKGLSDLACHYLSKA------GVSAIRRLR 316 (557)
Q Consensus 243 ~~Le~~k~~~~~~~~i~~~~~l~~~~~~E~~~i~~~v~~i~~~~~~lIi~~~~i~~~al~~L~~~------~I~~v~~v~ 316 (557)
+.++ +.+ .+.++++.+.+.+++|||++++|++.++++|..+ +|+++++.+
T Consensus 225 ~~i~-------------~~~-----------~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~nk~~~~~~i~av~~~~ 280 (545)
T PRK12852 225 KKLS-------------GLQ-----------AMLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNRLRGGLKVAAVKAPG 280 (545)
T ss_pred CccC-------------CHH-----------HHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHHhcccccceEEEEecCC
Confidence 8653 222 3457889999999999999999999999999886 789998655
Q ss_pred -----hhHHHHHHHHhCCcccc-----CCCCCCCCCcCCccceEEEEEECceEEEEEEecCC------------------
Q 036490 317 -----KTDNNRIAKACGAVIVN-----RPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKD------------------ 368 (557)
Q Consensus 317 -----~~~le~Ia~~tGa~iis-----~~~~l~~~~lG~~~~~v~~~~ig~~~~~~l~~~~~------------------ 368 (557)
+++|+||+.+|||++++ +++++++++||+ |+.+++.+ ++++++.+|..
T Consensus 281 ~~~~r~~~l~~ia~~tGa~~i~~~~~~~l~~~~~~~lG~-~~~v~~~~---~~~~~i~~~~~~~~i~~ri~~l~~~~~~~ 356 (545)
T PRK12852 281 FGDRRKAMLEDIAILTGGQLISEDLGIKLENVTLKMLGR-AKKVVIDK---ENTTIVNGAGKKADIEARVGQIKAQIEET 356 (545)
T ss_pred cccchHhHHHHHHHhcCCEEEecCcCCCcCCCCHHHCCC-CcEEEEEc---cEEEEEeCCCCHHHHHHHHHHHHHHHHhc
Confidence 89999999999999999 789999889999 99999887 68888988765
Q ss_pred -----------------CCeEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHhCCccccCCCchHHHHHHHHHHhhccCCC
Q 036490 369 -----------------PKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEG 431 (557)
Q Consensus 369 -----------------~~~~TIll~G~t~~~l~e~~~~l~dal~~~~~~l~~g~vvpGGG~~e~~l~~~L~~~~~~~~~ 431 (557)
++++||+|||+|+.+++|++|+++||++++++++++| +|||||++|++++.+|++++.. ++
T Consensus 357 ~~~~~~~~l~~R~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~a~~~a~~~g-~VpGGGa~e~~~s~~L~~~~~~-~~ 434 (545)
T PRK12852 357 TSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVEDALNATRAAVQEG-IVPGGGVALLRAKKAVGRINND-NA 434 (545)
T ss_pred ccHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhcC-CCcCchHHHHHHHHHHHHhhcC-Cc
Confidence 3789999999999999999999999999999999998 9999999999999999988766 77
Q ss_pred chhHHHHHHHHHhhhhHHHHHHhcCCCHHHHHHHHHHHhhCCCCceEEEeCCCCcccccccCccccchHHHHHHHHHHHH
Q 036490 432 IEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIE 511 (557)
Q Consensus 432 ~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~~~~~~~~~~Gid~~~g~i~d~~~~gi~dp~~vk~~~l~~A~e 511 (557)
++|+++++|++||+.||++|++|||+|+.+++.+|++.| ++++|||+.+|++.||++.|||||+.||.++|+.|+|
T Consensus 435 ~~q~~i~~~a~AL~~ip~~La~NaG~d~~~vl~~l~~~~----~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~e 510 (545)
T PRK12852 435 DVQAGINIVLKALEAPIRQIAENAGVEGSIVVGKILENK----SETFGFDAQTEEYVDMVAKGIIDPAKVVRTALQDAAS 510 (545)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhc----CCCeeEeCcCCCcccHHhCcCCcChHHHHHHHHHHHH
Confidence 899999999999999999999999999999999998877 3689999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhcCCccC
Q 036490 512 AACMLLRIDDIVSGIKKK 529 (557)
Q Consensus 512 ~a~~lL~id~ii~~~~~~ 529 (557)
+|++||+||++|...|++
T Consensus 511 ~a~~iL~id~iI~~~~~~ 528 (545)
T PRK12852 511 VAGLLVTTEAMVAELPKK 528 (545)
T ss_pred HHHHHHhHHHHhhcCCCC
Confidence 999999999999876643
No 34
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-89 Score=680.14 Aligned_cols=514 Identities=32% Similarity=0.483 Sum_probs=482.7
Q ss_pred ccccchHHHHHHHHHHHHHHHHhhhcCCcccccceeecCCCCEEEeccHHHHhhhccccChHHHHHHHHHHhhhhhcCCC
Q 036490 13 KRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDG 92 (557)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iT~DG~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDG 92 (557)
....|+.+|..|..|+..++++|++||||-|++||++++.|++.+||||+|||+.+.++||++++|++.++.|++++|||
T Consensus 13 e~~sg~~vr~qnv~a~~~i~nivkss~GPvGldKmlvdd~Gdvt~TndgAtiL~~l~V~HPa~KiLvelaq~qd~evgDg 92 (545)
T KOG0360|consen 13 ERLSGERVRTQNVMAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILSLLEVEHPAAKVLVELAQLQDEEVGDG 92 (545)
T ss_pred CcccchhhhhhhhHHHHHHHHHHHhccCccchhhhccccccceEEeccHHHHHHhhhhcchHHHHHHHHHHhccccccCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhh-ccccCCCCcHHHHHHHHHHhhhccccchhHHHHH
Q 036490 93 TTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDT-IAMPIDANDRATVLGLVKSCIGTKFTSQFGDLLA 171 (557)
Q Consensus 93 ttt~viL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~-~s~~i~~~~~~~l~~va~t~l~sk~~~~~~~~ls 171 (557)
||++++++++|++++.+|+..++||..+++||+.|+..+++++.+ .+.|++...+..|.++++|+++||+.....++++
T Consensus 93 ttsvviia~eLl~~a~~Lv~~~ihpt~ii~gyr~ac~e~~k~i~~~~~~~vd~lg~~~Lin~~ktsmsSK~i~~ds~~f~ 172 (545)
T KOG0360|consen 93 TTSVVIIAAELLKNADELVKTKIHPTRIISGYRLACIEAVKYITEGLSKPVDSLGTQILINLAKTSMSSKIIGMDSDFFT 172 (545)
T ss_pred ceEEEEEEHHhhhhHHHhhcCCCcceehhhhHHHHHHHHHHHhhccceeehhhcchHHHHHHHHhhhcceecccchHHHH
Confidence 999999999999999999999999999999999999999999964 6888998889999999999999999999999999
Q ss_pred HHHHHHHhhcccccCCCccccCcccceEEEEecCCCCCCcEEEEeEEEeccccCCCCCcccccCceEEEEeccccccccc
Q 036490 172 DLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGE 251 (557)
Q Consensus 172 ~lv~~a~~~v~~~~~~g~~~~d~~~~I~I~~i~G~~~~~S~li~Givl~~~~~~~~~~~~~~~n~~Ill~~~~Le~~k~~ 251 (557)
+++++|+..+.....+|....-+ +.++|.|.+|.+..+|.++.|+.++....+. .|+.++.|+||+++++.|...+.+
T Consensus 173 ~~Vvda~l~v~~~~~~ge~~ypi-~~vnILkahG~s~~eS~l~~GyaLnc~~asq-~m~~~i~~~Kiacld~~Lqk~km~ 250 (545)
T KOG0360|consen 173 EMVVDALLAVKILDINGEPHYPI-NSVNILKAHGKSQIESMLLPGYALNCSVASQ-MMPLRIKNAKIACLDFTLQKTKMK 250 (545)
T ss_pred HHHHHHHHHHhhcccCCceeccc-cceeEEecCCccchhheeecceeeeccHhhh-ccccccccceeeeEeccccccccc
Confidence 99999999876433244322222 2589999999999999999999999998886 899999999999999999999999
Q ss_pred ccceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCCeeEecCChhHHHHHHHHhCCcc
Q 036490 252 NQTNAELVKEEDWGVMLKIEEDYIENLCMQIVKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVI 331 (557)
Q Consensus 252 ~~~~~~i~~~~~l~~~~~~E~~~i~~~v~~i~~~~~~lIi~~~~i~~~al~~L~~~~I~~v~~v~~~~le~Ia~~tGa~i 331 (557)
....+.+.+++.++++.+.|....++.+++|...|+|||+++++|||+.++||.+.|+++++|+++++|++|+++||+++
T Consensus 251 lGv~vvv~dp~kle~ir~~e~~itkeRi~kIl~~ganvVLtt~gIddmc~K~~veagamAVrR~~k~dlk~iakatGat~ 330 (545)
T KOG0360|consen 251 LGVQVVVDDPEKLEQIRQREQDITKERIKKILATGANVVLTTGGIDDMCLKYFVEAGAMAVRRCKKEDLKRIAKATGATL 330 (545)
T ss_pred ccceEEEcChHHHHHHHHHHhHhHHHHHHHHHhcCCcEEEEcCCccHHHHHHHHHcchhhhHHHHHHHHHHHHHhhCCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCC------CCCCCcCCccceEEEEEECceEEEEEEecCCCCeEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHhCC
Q 036490 332 VNRPDE------LQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNP 405 (557)
Q Consensus 332 is~~~~------l~~~~lG~~~~~v~~~~ig~~~~~~l~~~~~~~~~TIll~G~t~~~l~e~~~~l~dal~~~~~~l~~g 405 (557)
++++.+ +.++.+|. |+.|.+.+|+++.++++.+.+.. .|+|+|||++++.++|++|++|||+++++..++++
T Consensus 331 ~sSla~l~geetf~~~~lG~-a~evvqeri~dde~ilikg~ka~-~aSiILrgaNd~~~DEmers~hdaL~VlkrtLes~ 408 (545)
T KOG0360|consen 331 LSSLANLEGEETFEPASLGS-ADEVVQERIGDDELILIKGTKAT-SASIILRGANDFMLDEMERSLHDALCVLKRTLESK 408 (545)
T ss_pred eehhhccccccccChhhccc-hhHHHHHhcccceeEEeccCccc-eeeEEEecCCcccHhhhccchhhHHHHHHHHhccC
Confidence 999874 55678999 99999999999999999997755 99999999999999999999999999999999999
Q ss_pred ccccCCCchHHHHHHHHHHhhccCCCchhHHHHHHHHHhhhhHHHHHHhcCCCHHHHHHHHHHHhhC--C-----CCceE
Q 036490 406 KLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHAN--G-----ENAWI 478 (557)
Q Consensus 406 ~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~~~~--~-----~~~~~ 478 (557)
++||||||+|.+++-+|++++.+...++|.++..|+.||..+|++|+.|++.|+.+++.++|+.|+. + ...|+
T Consensus 409 ~vvpGGG~vE~aLs~yle~~a~s~~srE~laiaefa~all~ipktla~naa~Dstelvt~lra~Hs~~q~~p~~~~~k~~ 488 (545)
T KOG0360|consen 409 SVVPGGGAVETALSIYLENFATSVGSREQLAIAEFAAALLSIPKTLAVNAAKDSTELVTKLRAYHSVSQDNPWRLLLKQY 488 (545)
T ss_pred ccccCccHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhcchHHHhhhhccccccccccccCCchhhccCCccccchhh
Confidence 9999999999999999999999999999999999999999999999999999999999999998862 1 13589
Q ss_pred EEeCCCCcccccccCccccchHHHHHHHHHHHHHHHHHHhhhhhhcCCccCC
Q 036490 479 GIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQ 530 (557)
Q Consensus 479 Gid~~~g~i~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~id~ii~~~~~~~ 530 (557)
|+|+.+|++.|.++.|+++|..+|...|+.|+|.+..+||||+++.-.|..+
T Consensus 489 GldL~ng~~~dn~~~g~~ep~~~kvksLk~ateaaitiLriD~li~l~~~~~ 540 (545)
T KOG0360|consen 489 GLDLINGKIRDNKSAGSFEPPIVKVKSLKFATEAAITILRIDDLIKLLPELQ 540 (545)
T ss_pred CccccccEeecceeeeeeccceeehhhhHHHHHhhhhhcchhhhhhcCcccc
Confidence 9999999999999999999999999999999999999999999998766543
No 35
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=100.00 E-value=3e-87 Score=722.38 Aligned_cols=457 Identities=23% Similarity=0.350 Sum_probs=417.4
Q ss_pred cccchHHHHHHHHHHHHHHHHhhhcCCcccccceeecCCCCEEEeccHHHHhhhccccCh----HHHHHHHHHHhhhhhc
Q 036490 14 RESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHP----AAKSMIELSRTQDEEV 89 (557)
Q Consensus 14 ~~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iT~DG~tIl~~l~~~hP----~a~ll~~~~~~~~~~~ 89 (557)
-.+|+++++.|++|+..++++|++||||+||+|||+++.|+++|||||+||+++|+++|| ++++++++|++|++++
T Consensus 4 ~~~~~~a~~~~~~~~~~la~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~akll~~~a~~qd~e~ 83 (524)
T TIGR02348 4 IKFDEEARKALLRGVDKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDKFENMGAQLVKEVASKTNDVA 83 (524)
T ss_pred ccccHHHHHHHHHHHHHHHHHhccCcCCCCCcEEEECCCCCeeEeccHHHHHHHccCCChhhHHHHHHHHHHHHccCcee
Confidence 457889999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhccccCCCCcHHHHHHHHHHhhhccccchhHHH
Q 036490 90 GDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAMPIDANDRATVLGLVKSCIGTKFTSQFGDL 169 (557)
Q Consensus 90 GDGttt~viL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~i~~~~~~~l~~va~t~l~sk~~~~~~~~ 169 (557)
||||||+++|+++||+++.+++++|+||..|++||+.|++.++++|+++++|++ +.+.+.++++|+. ++++.
T Consensus 84 GDGTTtvviLa~~Ll~~a~~li~~GihP~~Ii~G~~~A~~~~l~~L~~~s~~~~--~~~~l~~va~ts~------~~~~~ 155 (524)
T TIGR02348 84 GDGTTTATVLAQAIVKEGLKNVAAGANPIELKRGIEKAVEAAVEELKKLSKPVK--GKKEIAQVATISA------NNDEE 155 (524)
T ss_pred CCCcchHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCC--CHHHHHHHHHHhc------cChHH
Confidence 999999999999999999999999999999999999999999999999999987 6788999999874 36899
Q ss_pred HHHHHHHHHhhcccccCCCccccCcccceEEEEecCCCC-CCcEEEEeEEEeccccCCC------CCcccccCceEEEEe
Q 036490 170 LADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQL-EDSRVLKGVMFNKDVVAPG------KMRRKIVNPRIILLD 242 (557)
Q Consensus 170 ls~lv~~a~~~v~~~~~~g~~~~d~~~~I~I~~i~G~~~-~~S~li~Givl~~~~~~~~------~~~~~~~n~~Ill~~ 242 (557)
+++++++|+..++. ++. |.|.. |+.. .++++++|++|++++.++. .|++.++||+|+++|
T Consensus 156 l~~lv~~A~~~v~~---~~~--------i~v~~--g~~~~~~s~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d 222 (524)
T TIGR02348 156 IGSLIAEAMEKVGK---DGV--------ITVEE--SKSLETELEVVEGMQFDRGYISPYFVTDAEKMEVELENPYILITD 222 (524)
T ss_pred HHHHHHHHHHHhCc---CCc--------Eeeec--CCCccccEEEEEeEEEcCCCCCcccccCccCCeEEeeCceeeecc
Confidence 99999999999874 232 44543 5555 6799999999999999872 248899999999999
Q ss_pred cccccccccccceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHc------CCeeEecCC
Q 036490 243 SPLEYKKGENQTNAELVKEEDWGVMLKIEEDYIENLCMQIVKFKPDLVITEKGLSDLACHYLSKA------GVSAIRRLR 316 (557)
Q Consensus 243 ~~Le~~k~~~~~~~~i~~~~~l~~~~~~E~~~i~~~v~~i~~~~~~lIi~~~~i~~~al~~L~~~------~I~~v~~v~ 316 (557)
+.++ +.+++ .++++.+.+.|++|||++++|++.++++|..+ +|+++++++
T Consensus 223 ~~i~-------------~~~~i-----------~~~l~~i~~~g~~lvi~~~~i~~~al~~l~~n~~~~~~~i~avr~~~ 278 (524)
T TIGR02348 223 KKIS-------------NIKDL-----------LPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLNVCAVKAPG 278 (524)
T ss_pred CCcC-------------CHHHH-----------HHHHHHHHHhCcCEEEECCCCChHHHHHHHHhhcccccceEEEECCC
Confidence 9754 34443 47789999999999999999999999999887 788997764
Q ss_pred h-----hHHHHHHHHhCCcccc-----CCCCCCCCCcCCccceEEEEEECceEEEEEEecCCCC----------------
Q 036490 317 K-----TDNNRIAKACGAVIVN-----RPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPK---------------- 370 (557)
Q Consensus 317 ~-----~~le~Ia~~tGa~iis-----~~~~l~~~~lG~~~~~v~~~~ig~~~~~~l~~~~~~~---------------- 370 (557)
+ ++|+||+.+||+++++ +++++++++||+ |+.+++.+ ++++++.+|..++
T Consensus 279 ~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~-~~~v~~~~---~~~~~i~~~~~~~~~~~ri~~l~~~~~~~ 354 (524)
T TIGR02348 279 FGDRRKAMLEDIAILTGGQVISEELGLKLEEVTLDDLGK-AKKVTVDK---DNTTIVEGAGDKAAIKARVAQIKAQIEET 354 (524)
T ss_pred ccchhhhhHHHHHHHhCCEEecccccCCcCcCCHHHCCC-ceEEEEee---cEEEEEcCCCCHHHHHHHHHHHHHHHHhc
Confidence 4 8999999999999999 899999999999 99999876 7888998876543
Q ss_pred -------------------eEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHhCCccccCCCchHHHHHHHHHHhhccCCC
Q 036490 371 -------------------ACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEG 431 (557)
Q Consensus 371 -------------------~~TIll~G~t~~~l~e~~~~l~dal~~~~~~l~~g~vvpGGG~~e~~l~~~L~~~~~~~~~ 431 (557)
.+||+|||+|+.+++|++|+++||++++|+++++| +|||||++|++++.+|++ +...++
T Consensus 355 ~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~Dal~~~r~a~~~g-~VpGGGa~e~~~s~~L~~-~~~~~~ 432 (524)
T TIGR02348 355 TSDYDREKLQERLAKLAGGVAVIKVGAATETEMKEKKLRVEDALNATRAAVEEG-IVPGGGVALLRAAAALEG-LKGDNE 432 (524)
T ss_pred CCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcC-CccCCcHHHHHHHHHHHH-hccCCh
Confidence 78999999999999999999999999999999998 999999999999999998 677888
Q ss_pred chhHHHHHHHHHhhhhHHHHHHhcCCCHHHHHHHHHHHhhCCCCceEEEeCCCCcccccccCccccchHHHHHHHHHHHH
Q 036490 432 IEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIE 511 (557)
Q Consensus 432 ~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~~~~~~~~~~Gid~~~g~i~d~~~~gi~dp~~vk~~~l~~A~e 511 (557)
++++++++|++||+.||++|++|||+|+.+++++|+.. .+ ++|||+.+|++.||++.|||||+.||.++|+.|++
T Consensus 433 ~~~~~~~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~~--~~---~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~ 507 (524)
T TIGR02348 433 DEAIGIDIVKRALEAPLRQIAENAGKDGAVVAEKVKES--KG---NFGFNAATGEYEDLVEAGIIDPTKVTRSALQNAAS 507 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhc--CC---CeeEeCcCCcccchhhccCEEcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999864 22 38999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhcCC
Q 036490 512 AACMLLRIDDIVSGI 526 (557)
Q Consensus 512 ~a~~lL~id~ii~~~ 526 (557)
+|++||++|++|...
T Consensus 508 ~a~~iL~id~ii~~~ 522 (524)
T TIGR02348 508 IAGLLLTTEAVVADK 522 (524)
T ss_pred HHHHHHhHHHHhhcC
Confidence 999999999999653
No 36
>CHL00093 groEL chaperonin GroEL
Probab=100.00 E-value=5.5e-86 Score=713.36 Aligned_cols=461 Identities=23% Similarity=0.317 Sum_probs=412.5
Q ss_pred cccchHHHHHHHHHHHHHHHHhhhcCCcccccceeecCCCCEEEeccHHHHhhhccccChHH----HHHHHHHHhhhhhc
Q 036490 14 RESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAA----KSMIELSRTQDEEV 89 (557)
Q Consensus 14 ~~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iT~DG~tIl~~l~~~hP~a----~ll~~~~~~~~~~~ 89 (557)
..++.++|++.++||..++++|++||||+||+|||+++.|+++|||||+|||++|+++||++ +|+++++++|++++
T Consensus 5 ~~~~~~~~~~~~~g~~~la~~v~tTlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~a~~g~~li~~~a~~~~~e~ 84 (529)
T CHL00093 5 ILYQDNARRALERGMDILAEAVSVTLGPKGRNVVLEKKYGSPQIVNDGVTIAKEIELEDHIENTGVALIRQAASKTNDVA 84 (529)
T ss_pred eecCHHHHHHHHHHHHHHHHHHhcccCCCCCcEEEECCCCCeeEeccHHHHHHHccCcCHHHHHHHHHHHHHHHhcCcee
Confidence 35678999999999999999999999999999999999999999999999999999999998 58888999999999
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhccccCCCCcHHHHHHHHHHhhhccccchhHHH
Q 036490 90 GDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAMPIDANDRATVLGLVKSCIGTKFTSQFGDL 169 (557)
Q Consensus 90 GDGttt~viL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~i~~~~~~~l~~va~t~l~sk~~~~~~~~ 169 (557)
||||||+++|+++||+++.+++++|+||..|++||+.|.+.+++.|+++++|++ +.+.|.++++++++ +++.
T Consensus 85 GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~--d~~~L~~VA~ts~~------~~~~ 156 (529)
T CHL00093 85 GDGTTTATVLAYAIVKQGMKNVAAGANPISLKRGIEKATQYVVSQIAEYARPVE--DIQAITQVASISAG------NDEE 156 (529)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHhcc------ChHH
Confidence 999999999999999999999999999999999999999999999999999997 67889999998753 7899
Q ss_pred HHHHHHHHHhhcccccCCCccccCcccceEEEEecCCCCCCcEEEEeEEEeccccCCC------CCcccccCceEEEEec
Q 036490 170 LADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPG------KMRRKIVNPRIILLDS 243 (557)
Q Consensus 170 ls~lv~~a~~~v~~~~~~g~~~~d~~~~I~I~~i~G~~~~~S~li~Givl~~~~~~~~------~~~~~~~n~~Ill~~~ 243 (557)
+++++++|+.+++. +|. |.+.. .++...++++++|++|+++|.+|+ .|+..++||+|+++|+
T Consensus 157 l~~lv~eAv~~vg~---~g~--------i~~~~-g~~~~~~~~~v~G~~~~~g~~~p~fv~~~k~~~~~l~n~~Ili~d~ 224 (529)
T CHL00093 157 VGSMIADAIEKVGR---EGV--------ISLEE-GKSTVTELEITEGMRFEKGFISPYFVTDTERMEVVQENPYILLTDK 224 (529)
T ss_pred HHHHHHHHHHHhcc---CCc--------eeecC-CCccceeeEEEeeEEecCccCcCccccCCccceEEecCceehhhcC
Confidence 99999999999974 342 43322 222346789999999999999873 2333699999999999
Q ss_pred ccccccccccceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHH--HH----cCCeeEecCC-
Q 036490 244 PLEYKKGENQTNAELVKEEDWGVMLKIEEDYIENLCMQIVKFKPDLVITEKGLSDLACHYL--SK----AGVSAIRRLR- 316 (557)
Q Consensus 244 ~Le~~k~~~~~~~~i~~~~~l~~~~~~E~~~i~~~v~~i~~~~~~lIi~~~~i~~~al~~L--~~----~~I~~v~~v~- 316 (557)
+|++.+ ..+.++++.+.+.+++++|++++|++.++.+| ++ .+|+++++++
T Consensus 225 ~le~~~-----------------------~~i~~~l~~i~~~~~~lvi~~~~i~~~al~~l~l~k~~g~~~i~avr~~~~ 281 (529)
T CHL00093 225 KITLVQ-----------------------QDLLPILEQVTKTKRPLLIIAEDVEKEALATLVLNKLRGIVNVVAVRAPGF 281 (529)
T ss_pred CCCchH-----------------------HHHHHHHHHHHhcCCCEEEEcCCCChHHHHHHHHhhhcccceEEEEecCCC
Confidence 998532 12457889999999999999999999777766 66 4899999884
Q ss_pred ----hhHHHHHHHHhCCcccc-----CCCCCCCCCcCCccceEEEEEECceEEEEEEe---------cCC----------
Q 036490 317 ----KTDNNRIAKACGAVIVN-----RPDELQESDVGTGAGLFEVKKIGDEFFAFIVD---------CKD---------- 368 (557)
Q Consensus 317 ----~~~le~Ia~~tGa~iis-----~~~~l~~~~lG~~~~~v~~~~ig~~~~~~l~~---------~~~---------- 368 (557)
+++|+||+.+|||++++ ++++++++++|+ |+.+++.+ ++++++++ |..
T Consensus 282 ~~~~k~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~-~~~v~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 357 (529)
T CHL00093 282 GDRRKAMLEDIAILTGGQVITEDAGLSLETIQLDLLGQ-ARRIIVTK---DSTTIIADGNEEQVKARCEQLRKQIEIADS 357 (529)
T ss_pred CcchHHHHHHHHHhhCCEEecccccCCcCCCCHHHCCc-ceEEEEec---CEEEEEecCcHHHHHHHHHHHHHHhhhcCC
Confidence 48899999999999999 799999999999 99999875 67788874 321
Q ss_pred ---------------CCeEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHhCCccccCCCchHHHHHHHHHHhhc-cCCCc
Q 036490 369 ---------------PKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSS-SIEGI 432 (557)
Q Consensus 369 ---------------~~~~TIll~G~t~~~l~e~~~~l~dal~~~~~~l~~g~vvpGGG~~e~~l~~~L~~~~~-~~~~~ 432 (557)
+..+||+|||+|+.+++|.+|+++||++++++++++| +|||||++|++|+.+|++++. ..+++
T Consensus 358 ~~~~~~l~eR~~~l~g~~~~I~irg~t~~~l~E~er~i~DAl~a~r~a~~~g-vVpGGGa~e~~~s~~L~~~~~~~~~g~ 436 (529)
T CHL00093 358 SYEKEKLQERLAKLSGGVAVIKVGAATETEMKDKKLRLEDAINATKAAVEEG-IVPGGGATLVHLSENLKTWAKNNLKED 436 (529)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcC-cccCCcHHHHHHHHHHHHHhccCCChH
Confidence 1488899999999999999999999999999999998 999999999999999999876 78899
Q ss_pred hhHHHHHHHHHhhhhHHHHHHhcCCCHHHHHHHHHHHhhCCCCceEEEeCCCCcccccccCccccchHHHHHHHHHHHHH
Q 036490 433 EKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEA 512 (557)
Q Consensus 433 ~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~~~~~~~~~~Gid~~~g~i~d~~~~gi~dp~~vk~~~l~~A~e~ 512 (557)
+|+++++|++||+.||++|++|||+|+.+++.+++.. +.++|||+.+|++.||++.|||||+.||.++|+.|+|+
T Consensus 437 ~~~~i~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~~-----~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~e~ 511 (529)
T CHL00093 437 ELIGALIVARAILAPLKRIAENAGKNGSVIIEKVQEQ-----DFEIGYNAANNKFVNMYEAGIIDPAKVTRSALQNAASI 511 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcc-----CCCEeEECCCCcccchHhccCEEcHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999754 25899999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhcCCc
Q 036490 513 ACMLLRIDDIVSGIK 527 (557)
Q Consensus 513 a~~lL~id~ii~~~~ 527 (557)
|++||+||++|...|
T Consensus 512 a~~iL~id~ii~~~~ 526 (529)
T CHL00093 512 ASMILTTECIIVDKK 526 (529)
T ss_pred HHHHHHHHHHHHcCC
Confidence 999999999998754
No 37
>PRK14104 chaperonin GroEL; Provisional
Probab=100.00 E-value=4.5e-85 Score=706.20 Aligned_cols=460 Identities=22% Similarity=0.302 Sum_probs=415.9
Q ss_pred cccchHHHHHHHHHHHHHHHHhhhcCCcccccceeecCCCCEEEeccHHHHhhhcccc----ChHHHHHHHHHHhhhhhc
Q 036490 14 RESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVA----HPAAKSMIELSRTQDEEV 89 (557)
Q Consensus 14 ~~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iT~DG~tIl~~l~~~----hP~a~ll~~~~~~~~~~~ 89 (557)
..+|.+++..|++|+..++++|++||||+||+|||+++.|+++|||||+||+++|+++ ||+++|++++|++|++++
T Consensus 6 ~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~k~i~~~~g~~~iTnDG~tIlk~i~~~d~~~~pgakll~e~a~~qd~e~ 85 (546)
T PRK14104 6 VKFGVDARDRMLRGVDILANAVKVTLGPKGRNVVLDKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKSADAA 85 (546)
T ss_pred ecchHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEcCCCCeeEeccHHHHHHHhcCCCcccChHHHHHHHHHHhhcccc
Confidence 4578899999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhccccCCCCcHHHHHHHHHHhhhccccchhHHH
Q 036490 90 GDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAMPIDANDRATVLGLVKSCIGTKFTSQFGDL 169 (557)
Q Consensus 90 GDGttt~viL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~i~~~~~~~l~~va~t~l~sk~~~~~~~~ 169 (557)
||||||+|+|+++||+++.+++++|+||..|++||+.|.+.+++.|+++++|++ +.+.+.++++++.+ .++.
T Consensus 86 GDGTTTvvvLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~v~--~~~~l~~va~~s~~------~d~~ 157 (546)
T PRK14104 86 GDGTTTATVLAQAIVREGAKSVAAGMNPMDLKRGIDLAVEAVVADLVKNSKKVT--SNDEIAQVGTISAN------GDAE 157 (546)
T ss_pred cCcccHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHhcccCC--CHHHHHHHHHHHhc------CchH
Confidence 999999999999999999999999999999999999999999999999999997 45679999998754 4578
Q ss_pred HHHHHHHHHhhcccccCCCccccCcccceEEEEecCCCC-CCcEEEEeEEEeccccCCC------CCcccccCceEEEEe
Q 036490 170 LADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQL-EDSRVLKGVMFNKDVVAPG------KMRRKIVNPRIILLD 242 (557)
Q Consensus 170 ls~lv~~a~~~v~~~~~~g~~~~d~~~~I~I~~i~G~~~-~~S~li~Givl~~~~~~~~------~~~~~~~n~~Ill~~ 242 (557)
+++++++|+..++. +|. |.+.. ++.. .++++++|++|++++.+|. .++.+++||+|++++
T Consensus 158 i~~lv~~Av~~vg~---~g~--------i~v~~--~~~~~~~~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~~~~Ilv~d 224 (546)
T PRK14104 158 IGKFLADAMKKVGN---EGV--------ITVEE--AKSLETELDVVEGMQFDRGYISPYFVTNADKMRVEMDDAYILINE 224 (546)
T ss_pred HHHHHHHHHHHhcc---CCc--------eeeEe--cccccceEEEEEEEEEeCCCCCcchhcCcccCceeeeCcEEEEeh
Confidence 99999999999975 342 55544 3344 4899999999999999871 336789999999998
Q ss_pred cccccccccccceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHH------cCCeeEecCC
Q 036490 243 SPLEYKKGENQTNAELVKEEDWGVMLKIEEDYIENLCMQIVKFKPDLVITEKGLSDLACHYLSK------AGVSAIRRLR 316 (557)
Q Consensus 243 ~~Le~~k~~~~~~~~i~~~~~l~~~~~~E~~~i~~~v~~i~~~~~~lIi~~~~i~~~al~~L~~------~~I~~v~~v~ 316 (557)
..+. +.++ +.++++.+.+.+++|||++++|++.++++|.. .+|+++++.+
T Consensus 225 ~~i~-------------~~~~-----------i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~Nk~~~~~~i~av~~~~ 280 (546)
T PRK14104 225 KKLS-------------SLNE-----------LLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPG 280 (546)
T ss_pred hhhc-------------CHHH-----------HHHHHHHHHHhCcCEEEECCCCcHHHHHHHHhCcccceeeEEEEeccC
Confidence 5543 3333 44788999999999999999999999999985 4678886666
Q ss_pred -----hhHHHHHHHHhCCccccC-----CCCCCCCCcCCccceEEEEEECceEEEEEEecCCC-----------------
Q 036490 317 -----KTDNNRIAKACGAVIVNR-----PDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDP----------------- 369 (557)
Q Consensus 317 -----~~~le~Ia~~tGa~iis~-----~~~l~~~~lG~~~~~v~~~~ig~~~~~~l~~~~~~----------------- 369 (557)
+++|+||+.+||++++++ ++++++++||+ |+.+++ ++++++++.+|.++
T Consensus 281 ~g~~r~~~l~~ia~~tG~~~i~~~~~~~l~~~~~~~LG~-a~~v~~---~~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~ 356 (546)
T PRK14104 281 FGDRRKAMLQDIAILTGGQAISEDLGIKLENVTLQMLGR-AKKVMI---DKENTTIVNGAGKKADIEARVAQIKAQIEET 356 (546)
T ss_pred CCcchHHHHHHHHHHhCCEEEecCCCCCcCcCCHHHCCc-eeEEEE---cCCEEEEEeCCCCHHHHHHHHHHHHHHHHhc
Confidence 799999999999999998 89999889999 999875 66899999998764
Q ss_pred ------------------CeEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHhCCccccCCCchHHHHHHHHHHhhccCCC
Q 036490 370 ------------------KACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEG 431 (557)
Q Consensus 370 ------------------~~~TIll~G~t~~~l~e~~~~l~dal~~~~~~l~~g~vvpGGG~~e~~l~~~L~~~~~~~~~ 431 (557)
+++||+|||+|+.+++|++|+++||++++++++++| +|||||++|++++..|+++. ..++
T Consensus 357 ~~~~~~~~l~eRi~~l~~~~atI~irG~t~~~l~e~~r~i~Dal~a~~~ai~~g-~VpGGGa~e~~~s~~L~~~~-~~~~ 434 (546)
T PRK14104 357 TSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEG-IVPGGGVALLRASEQLKGIK-TKND 434 (546)
T ss_pred CCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cCcCchHHHHHHHHHHHHhh-cCCh
Confidence 899999999999999999999999999999999998 99999999999999999874 4578
Q ss_pred chhHHHHHHHHHhhhhHHHHHHhcCCCHHHHHHHHHHHhhCCCCceEEEeCCCCcccccccCccccchHHHHHHHHHHHH
Q 036490 432 IEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIE 511 (557)
Q Consensus 432 ~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~~~~~~~~~~Gid~~~g~i~d~~~~gi~dp~~vk~~~l~~A~e 511 (557)
++++++++|++||+.||++|++|||+|+.+++.+|+..| .+++|||+.+|++.||++.|||||+.||.++|+.|++
T Consensus 435 ~~~~~i~~~a~Al~~ip~~La~NaG~d~~~v~~~l~~~~----~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~~ 510 (546)
T PRK14104 435 DQKTGVEIVRKALSAPARQIAINAGEDGSVIVGKILEKE----QYSYGFDSQTGEYGNLVSKGIIDPTKVVRTAIQNAAS 510 (546)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhCCCCHHHHHHHHHhcC----CCcEeEeCCCCceeehHhcCCEEcHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999998654 3679999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhcCCcc
Q 036490 512 AACMLLRIDDIVSGIKK 528 (557)
Q Consensus 512 ~a~~lL~id~ii~~~~~ 528 (557)
+|++||+||++|...|+
T Consensus 511 ~a~~iL~id~~I~~~~~ 527 (546)
T PRK14104 511 VAALLITTEAMVAELPK 527 (546)
T ss_pred HHHHHHHHHHHHhcCCc
Confidence 99999999999977653
No 38
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-85 Score=654.14 Aligned_cols=507 Identities=29% Similarity=0.475 Sum_probs=471.2
Q ss_pred cccccccccccc-hHHHHHHHHHHHHHHHHhhhcCCcccccceeecCCCCEEEeccHHHHhhhccccChHHHHHHHHHHh
Q 036490 6 LVLKDSLKRESG-TKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRT 84 (557)
Q Consensus 6 ~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iT~DG~tIl~~l~~~hP~a~ll~~~~~~ 84 (557)
.++++|..+.+| +++..+|+.||+++++++||+|||+||+||++++.|+..+|||.+||+++|+++||+||||+++++.
T Consensus 12 q~~k~g~r~~~~~e~~v~~ni~a~~ela~~~rs~yGpng~nK~vvnh~~k~~~TndaatIlrelev~HPaakllv~a~~~ 91 (537)
T KOG0362|consen 12 QMLKEGARSPSGEEEAVIRNIAAVRELANVIRSAYGPNGRNKMVVNHLGKTFVTNDAATILRELEVEHPAAKLLVEATQM 91 (537)
T ss_pred hHHhccccCcccchHHHHHHHHHHHHHHHHHHhhcCCCCcceeeecccceEEEcCChHHHHHHhhccCcHHHHHHHHHHH
Confidence 577899888888 6677999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhcccc--CCCCcHHHHHHHHHHhhhccc
Q 036490 85 QDEEVGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAMP--IDANDRATVLGLVKSCIGTKF 162 (557)
Q Consensus 85 ~~~~~GDGttt~viL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~--i~~~~~~~l~~va~t~l~sk~ 162 (557)
|+++.||||+++|+|+++||++|++++..|++|.+|++||+.|.+++++.|+++.+. .+..|.+ .++++++.||.
T Consensus 92 q~~~iGDgtnfvvvla~~LLe~Ae~li~~Gl~~~ei~~gy~~A~~~~~e~l~~lv~~~~~d~~d~~---~~~rs~i~skq 168 (537)
T KOG0362|consen 92 QEEEIGDGTNFVVVLAGALLEQAEELIRMGLTPAEISEGYETATKEALEILPELVVQSIGDLEDKE---WALRSVIMSKQ 168 (537)
T ss_pred HHHhhCCCceEeehhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHhcccccChH---HHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999887553 1223443 78888888886
Q ss_pred cchhHHHHHHHHHHHHhhcccccCCCccccCcccceEEEEecCCCCCCcEEEEeEEEeccccCCCCCcccccCceEEEEe
Q 036490 163 TSQFGDLLADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLD 242 (557)
Q Consensus 163 ~~~~~~~ls~lv~~a~~~v~~~~~~g~~~~d~~~~I~I~~i~G~~~~~S~li~Givl~~~~~~~~~~~~~~~n~~Ill~~ 242 (557)
.. ..+++++++++|...+.+ .+. |+.+ +|+|+|+.|+++++|+++.|++|.+.... .++.-..+||++++
T Consensus 169 ~~-~ed~l~~lVa~ac~si~p---~~~--Fnvd-nIrVcKi~Gg~l~~S~Vv~GmVfkr~~eG---~v~~ak~arvAvf~ 238 (537)
T KOG0362|consen 169 YG-NEDFLTKLVAKACVSILP---LMS--FNVD-NIRVCKILGGGLEDSCVVCGMVFKRDPEG---EVKSAKDARVAVFA 238 (537)
T ss_pred cc-hHHHHHHHHHHHHHhhcc---ccc--cccc-ceEEEEEecCCcccceeeEEEEeccccCC---cccccccceeEEEe
Confidence 44 578999999999999986 233 5555 69999999999999999999999987654 34777889999999
Q ss_pred cccccccccccceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCCeeEecCChhHHHH
Q 036490 243 SPLEYKKGENQTNAELVKEEDWGVMLKIEEDYIENLCMQIVKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNR 322 (557)
Q Consensus 243 ~~Le~~k~~~~~~~~i~~~~~l~~~~~~E~~~i~~~v~~i~~~~~~lIi~~~~i~~~al~~L~~~~I~~v~~v~~~~le~ 322 (557)
||++...++++.++.+++++++.+|.+.|+..++..++.|...|+++|++.+.+++++++||++.+|++++--++.+|.|
T Consensus 239 cP~d~~~TEtkgTvLi~~A~el~~FSKgEe~lle~~vk~Ia~~gvkViV~~g~V~em~Lhflnky~ImVlqi~Sk~eLrr 318 (537)
T KOG0362|consen 239 CPFDIAQTETKGTVLLKNAKELLNFSKGEEALLEEQVKAIADAGVKVIVSGGKVDEMTLHFLNKYKIMVLQINSKFDLRR 318 (537)
T ss_pred cCCCcccccCcceeeecCcHhhhhhccccHHHHHHHHHHHHhcCCeEEEecCccchhhhhhhccccEEEEEeccHhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCccccCCCCCCCCCcCCccceEEEEEECceEEEEEEec-CCCCeEEEEEccCCHHHHHHHHHHHHHHHHHHHHH
Q 036490 323 IAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDC-KDPKACTVLLRGASKDLLNEVERNLQDAMSVARNI 401 (557)
Q Consensus 323 Ia~~tGa~iis~~~~l~~~~lG~~~~~v~~~~ig~~~~~~l~~~-~~~~~~TIll~G~t~~~l~e~~~~l~dal~~~~~~ 401 (557)
|++..||++++++..+.++.+|+ |++|...++|+.+++.|... ..+++.|++|||+++..+|+.||+++|++++.+..
T Consensus 319 lcrtvGA~~l~rl~~P~~~~lG~-~d~V~~~EiG~~~v~vF~~e~~~~~~~TvVLRgst~s~LDd~ERAVddgV~tyK~l 397 (537)
T KOG0362|consen 319 LCRTVGATALPRLFPPAPEELGY-CDSVSTQEIGDTLVVVFRWESTGTRVATVVLRGATQSILDDAERAVDDGVNTYKAL 397 (537)
T ss_pred HHHHcCCccchhccCCCCccccc-cceeeeeecCCceEEEEeeccCCCceeEEEEcccchhhHHHHHHHHHHhHHHhhhh
Confidence 99999999999999999999999 99999999999999888753 46789999999999999999999999999999999
Q ss_pred HhCCccccCCCchHHHHHHHHHHhhccCCCchhHHHHHHHHHhhhhHHHHHHhcCCCHHHHHHHHHHHhhCCCCceEEEe
Q 036490 402 IKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGID 481 (557)
Q Consensus 402 l~~g~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~~~~~~~~~~Gid 481 (557)
.++++++||+|++|++|+..|.+++..+++..|++++.|++||+.+|++|++|+|++..+++++|.+.|..+ ...|+|
T Consensus 398 ~~d~rLlpGagatEieLak~i~~~g~~~~Gl~q~Aik~fa~Ale~~PktlaEnagl~~~evia~ly~~h~~g--~~~g~d 475 (537)
T KOG0362|consen 398 CSDSRLLPGAGATEIELAKQISSRGATLPGLKQLAIKKFAEALEVLPKTLAENAGLAVTEVIAKLYAVHQGG--KNLGMD 475 (537)
T ss_pred ccCCccccCCchhHHHHHHHHHHhcccCCCcchhHHHHHHHHhccccHhHHHhcCCcHHHHHHHHHHhhcCC--Ccceee
Confidence 999999999999999999999999999999999999999999999999999999999999999999999844 457888
Q ss_pred CCCC-cccccccCccccchHHHHHHHHHHHHHHHHHHhhhhhhcCCcc
Q 036490 482 GNTG-AISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKK 528 (557)
Q Consensus 482 ~~~g-~i~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~id~ii~~~~~ 528 (557)
+.-. ...|+.+.||||.+.+|.++++.|+|+|+++|++|+||++++.
T Consensus 476 i~~e~~~~d~~~~~i~D~~~~K~~a~k~at~aa~tvl~vDqiimak~a 523 (537)
T KOG0362|consen 476 IEAEGGTIDVREEGIWDTLAVKAQAIKLATEAALTVLTVDQIIMAKKA 523 (537)
T ss_pred eeccccccChhhhchHHHHHHHHHHHHHHHhhhheeeehhheeEeccc
Confidence 7666 5899999999999999999999999999999999999998665
No 39
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=100.00 E-value=1.4e-85 Score=713.55 Aligned_cols=464 Identities=21% Similarity=0.316 Sum_probs=414.6
Q ss_pred cccch--HHHHHHHHHHHHHHHHhhhcCCcccccceeecCCCCEEEeccHHHHhhhccccCh----HHHHHHHHHHhhhh
Q 036490 14 RESGT--KVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHP----AAKSMIELSRTQDE 87 (557)
Q Consensus 14 ~~~~~--~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iT~DG~tIl~~l~~~hP----~a~ll~~~~~~~~~ 87 (557)
..+|. ++|+..++||+.|+++|++||||+||+|||+++.|+++|||||+||+|+|+++|| +|+|++++|++|++
T Consensus 59 ~~~~~~~~ar~~l~~g~~~la~~vktTLGP~G~~kmi~~~~G~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd~ 138 (600)
T PLN03167 59 LHFNKDGSAIKKLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTND 138 (600)
T ss_pred eecCCcHHHHHHHHHHHHHHHHHHhccCCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCchhhHHHHHHHHHHHhhhh
Confidence 35667 7999999999999999999999999999999999999999999999999999999 59999999999999
Q ss_pred hcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhccccCCCCcHHHHHHHHHHhhhccccchhH
Q 036490 88 EVGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAMPIDANDRATVLGLVKSCIGTKFTSQFG 167 (557)
Q Consensus 88 ~~GDGttt~viL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~i~~~~~~~l~~va~t~l~sk~~~~~~ 167 (557)
++||||||++||+++||+++.+++++|+||..|++||+.|.+.+++.|++++.|++ + +.|.++++++++ ++
T Consensus 139 evGDGTTTvvVLa~~LL~ea~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~s~~v~--d-~~L~~vA~tS~~------~~ 209 (600)
T PLN03167 139 LAGDGTTTSVVLAQGLIAEGVKVVAAGANPVQITRGIEKTAKALVKELKKMSKEVE--D-SELADVAAVSAG------NN 209 (600)
T ss_pred hhCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCC--H-HHHHHHHHHhcc------Cc
Confidence 99999999999999999999999999999999999999999999999999999886 3 579999998854 56
Q ss_pred HHHHHHHHHHHhhcccccCCCccccCcccceEEEEecCCCCCCc-EEEEeEEEeccccCCC------CCcccccCceEEE
Q 036490 168 DLLADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDS-RVLKGVMFNKDVVAPG------KMRRKIVNPRIIL 240 (557)
Q Consensus 168 ~~ls~lv~~a~~~v~~~~~~g~~~~d~~~~I~I~~i~G~~~~~S-~li~Givl~~~~~~~~------~~~~~~~n~~Ill 240 (557)
+.|++++++|+.++++ +|. |.+. .|++.+++ ++++|++|+++|.+|+ +|+++++||+|++
T Consensus 210 ~~i~~liaeAv~~Vg~---~g~--------i~v~--~g~s~~dsl~~v~G~~~d~g~~spyfvt~~~~m~~~l~np~Ill 276 (600)
T PLN03167 210 YEVGNMIAEAMSKVGR---KGV--------VTLE--EGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYDNCKLLL 276 (600)
T ss_pred HHHHHHHHHHHHHhcc---CCc--------EEec--cCCCccceeEEEEEEEecCCccCcccccCcCCCeEEEeCCEEEE
Confidence 7999999999999974 342 4443 58888887 8999999999999873 6899999999999
Q ss_pred EecccccccccccceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHH------HcCCeeEec
Q 036490 241 LDSPLEYKKGENQTNAELVKEEDWGVMLKIEEDYIENLCMQIVKFKPDLVITEKGLSDLACHYLS------KAGVSAIRR 314 (557)
Q Consensus 241 ~~~~Le~~k~~~~~~~~i~~~~~l~~~~~~E~~~i~~~v~~i~~~~~~lIi~~~~i~~~al~~L~------~~~I~~v~~ 314 (557)
+|+.++ +.+++. ++++.+.+.++++||++++|++.++++|. ..+|+++++
T Consensus 277 ~d~~i~-------------~~~~l~-----------~~le~i~~~g~~lvI~a~~I~~~aL~~L~~nkl~g~~~i~aVk~ 332 (600)
T PLN03167 277 VDKKIT-------------NARDLI-----------GILEDAIRGGYPLLIIAEDIEQEALATLVVNKLRGSLKIAALKA 332 (600)
T ss_pred EccccC-------------CHHHHH-----------HHHHHHHHhCcCEEEEcCCCCHHHHHHHHHhhccccceEEEEEc
Confidence 998643 555665 44567788999999999999999999998 567899988
Q ss_pred CC-----hhHHHHHHHHhCCcccc-----CCCCCCCCCcCCccceEEEEE-----ECc--------eEEEEEEecC----
Q 036490 315 LR-----KTDNNRIAKACGAVIVN-----RPDELQESDVGTGAGLFEVKK-----IGD--------EFFAFIVDCK---- 367 (557)
Q Consensus 315 v~-----~~~le~Ia~~tGa~iis-----~~~~l~~~~lG~~~~~v~~~~-----ig~--------~~~~~l~~~~---- 367 (557)
.+ +++|+||+.+||+++++ +++++++++||+ |+.|++++ +|+ +|+.+|++|.
T Consensus 333 p~~g~~~~~~L~dia~~tGa~~i~~~~~~~l~~~~~~~LG~-a~~v~~~~~~t~iig~~~~~~~i~~r~~~i~~~~~~~~ 411 (600)
T PLN03167 333 PGFGERKSQYLDDIAILTGGTVIREEVGLSLDKVGKEVLGT-AAKVVLTKDTTTIVGDGSTQEAVNKRVAQIKNLIEAAE 411 (600)
T ss_pred ccCCcchHHHHHHHHHhhCCEEecccccCCcccCCHHHCce-eeEEEEecccceeeCCCccHHHHHHHHHHHHhhhhccC
Confidence 85 78999999999999999 788898889999 99999987 765 4677776653
Q ss_pred --------C------CCeEEE-EEccCCHHHHHHHHHHHHHHHHHHHHHHhCCccccCCCchHHHHHHHHHHhhccCCCc
Q 036490 368 --------D------PKACTV-LLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGI 432 (557)
Q Consensus 368 --------~------~~~~TI-ll~G~t~~~l~e~~~~l~dal~~~~~~l~~g~vvpGGG~~e~~l~~~L~~~~~~~~~~ 432 (557)
. ...+|+ +|||+|+.+++|+||+++||++++++++++| +|||||++|++|+.+|++++...++.
T Consensus 412 ~~~~~~~l~~Ri~~l~g~~aiI~vgG~t~~~l~E~er~i~DAl~avk~ai~~g-vVpGGGa~el~ls~~L~~~~~~~~~~ 490 (600)
T PLN03167 412 QDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLASKVDAIKDTLEND 490 (600)
T ss_pred CHHHHHHHHHHHhhcCCcEEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHhcC-CCccHHHHHHHHHHHHHHHHhcCCCh
Confidence 1 123455 5999999999999999999999999999999 99999999999999999988777777
Q ss_pred hhH-HHHHHHHHhhhhHHHHHHhcCCCHHHHHHHHHHHhhCCCCceEEEeCCCCcccccccCccccchHHHHHHHHHHHH
Q 036490 433 EKW-PYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIE 511 (557)
Q Consensus 433 ~~~-~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~~~~~~~~~~Gid~~~g~i~d~~~~gi~dp~~vk~~~l~~A~e 511 (557)
+|+ +++++++||+.||++|++|||+|+.+++.+|+..+ ++++|||+.+|++.||++.|||||+.||+++|+.|++
T Consensus 491 eq~~g~~~~~~Al~~p~r~La~NAG~d~~~vv~~L~~~~----~~~~G~d~~~g~~~dm~~~GI~Dp~~Vk~~al~~A~~ 566 (600)
T PLN03167 491 EQKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSND----NPKFGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAAS 566 (600)
T ss_pred hHHHHHHHHHHHHhcchhhhhhcCCCCHHHHHHHHHhcC----CCCEeEeCCCCcCcchHhccCeecHHHHHHHHHHHHH
Confidence 774 59999999999999999999999999999997433 3689999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhcCCccC
Q 036490 512 AACMLLRIDDIVSGIKKK 529 (557)
Q Consensus 512 ~a~~lL~id~ii~~~~~~ 529 (557)
+|++||++|++|...+.+
T Consensus 567 ~A~~iL~iD~iI~~~~~~ 584 (600)
T PLN03167 567 VAKTFLTSDCVVVEIKEP 584 (600)
T ss_pred HHHHHHHHHHHhhcCCCC
Confidence 999999999999876543
No 40
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-83 Score=628.99 Aligned_cols=495 Identities=28% Similarity=0.520 Sum_probs=472.2
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCcccccceeecCCCCEEEeccHHHHhhhccccChHHHHHHHHHHhhhhhcCCChhHHH
Q 036490 18 TKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVI 97 (557)
Q Consensus 18 ~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iT~DG~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGttt~v 97 (557)
..+...|+.++..+.+++++.+||.|..||++++.|++.+|+||.+.+++|+++||-+-++..++.+|++..||||||+|
T Consensus 16 ~aal~iNis~AigLqsV~~snlgPkgt~KmlvsgagdIklakdgnvLl~emQiqhPTa~lIakaatAqdd~tGDGttS~V 95 (520)
T KOG0359|consen 16 QAALALNISAAIGLQSVLVLNLGPKGTEKMLVSGAGDIKLAKDGNVLLKEMQIQHPTASLIAKVATAQDDITGDGTTSVV 95 (520)
T ss_pred hcceeeccccccceeeeehhccCchhHHHhccCCccceEEEecchhhHHHHhhcCchHHHHHHHHHHhhcccCCCcceEE
Confidence 45566799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhccccCCCCcHHHHHHHHHHhhhccccchhHHHHHHHHHHH
Q 036490 98 VLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAMPIDANDRATVLGLVKSCIGTKFTSQFGDLLADLAIDA 177 (557)
Q Consensus 98 iL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~i~~~~~~~l~~va~t~l~sk~~~~~~~~ls~lv~~a 177 (557)
+|+++|+++|..++..|+||..|++||+.|.+.++++|+..+.++ +++.|..+++|+|++|+...-.+.+++++++|
T Consensus 96 lligEllkqa~~~i~eGlhprii~~gfe~a~~~~l~~L~k~~~~~---~~~~L~~va~tsl~Tkv~~~la~~lt~~vv~a 172 (520)
T KOG0359|consen 96 LLIGELLKQADRYISEGLHPRIITEGFEAAKNKALEFLEKVSREV---DRETLKDVARTSLRTKVHAELADVLTPIVVDS 172 (520)
T ss_pred EeeHHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHhhhhccccch---hHHHHHHHHHHhhcCcccHHHHhHhHHHHHhh
Confidence 999999999999999999999999999999999999999777776 48899999999999999998899999999999
Q ss_pred HhhcccccCCCccccCcccceEEEEecCCCCCCcEEEEeEEEeccccCCCCCcccccCceEEEEecccccccccccceEE
Q 036490 178 TTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAE 257 (557)
Q Consensus 178 ~~~v~~~~~~g~~~~d~~~~I~I~~i~G~~~~~S~li~Givl~~~~~~~~~~~~~~~n~~Ill~~~~Le~~k~~~~~~~~ 257 (557)
+..+.. ...++|+. ++.|.+....+..|+.+++|++++++..|| .||++++|++||++|-+|||+|++.++.+.
T Consensus 173 Vl~i~~----~~~~idl~-mveim~mq~~s~~dT~~v~glvLdhg~rHp-dmp~~~e~a~iL~~NvSLEYEK~Einsgff 246 (520)
T KOG0359|consen 173 VLCIRR----QEEPIDLF-MVEIMEMQHKSLHDTSLVQGLVLDHGARHP-DMPRRVEDAYILICNVSLEYEKPEINSGFF 246 (520)
T ss_pred heeecc----CCCCcchh-HHHhhhhccCchhhhHHhhhhhccCCCCCc-ccccchhceEEEEeeccccccccccccchh
Confidence 998862 23457886 799999888898999999999999999999 999999999999999999999999999999
Q ss_pred EcCHHHHHHHHHHHHHHHHHHHHHHHHcCC----cEEEeCCCCCHHHHHHHHHcCCeeEecCChhHHHHHHHHhCCcccc
Q 036490 258 LVKEEDWGVMLKIEEDYIENLCMQIVKFKP----DLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVN 333 (557)
Q Consensus 258 i~~~~~l~~~~~~E~~~i~~~v~~i~~~~~----~lIi~~~~i~~~al~~L~~~~I~~v~~v~~~~le~Ia~~tGa~iis 333 (557)
|++.++.+.+...|++++.+.+++|++++. -+||.|++|||..++.|++.||++++|.++..|||+..+||+..++
T Consensus 247 Ysta~ere~L~~~eR~Fi~~r~~kiielk~~vc~fvvinqkGidp~sld~~a~~gIlaLRRAKRRNmERL~lacGG~a~n 326 (520)
T KOG0359|consen 247 YSTAEEREVLVLAERKFIDQRVRKIIELKRKVCEFVVINQKGIDPTSLDSLAKSGILALRRAKRRNMERLVLACGGEAVN 326 (520)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcceEEEecccCCCCCcchhhhhcchHHHHHHhhhhHHHHHHhhccceec
Confidence 999999999999999999999999988654 3688899999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcCCccceEEEEEECceEEEEEEecCCCCeEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHhCCccccCCCc
Q 036490 334 RPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGA 413 (557)
Q Consensus 334 ~~~~l~~~~lG~~~~~v~~~~ig~~~~~~l~~~~~~~~~TIll~G~t~~~l~e~~~~l~dal~~~~~~l~~g~vvpGGG~ 413 (557)
++++|+++.+|+ |+.+++.++|+++|+|+++|+++.+|||+|+||+++.+.+.|++++|++++++++++++.++||+|+
T Consensus 327 svddLtp~~LG~-aglVye~tlGEEkfTFIE~~~~p~S~TiLikgpnkht~tQikdairdglrav~ntl~d~~~i~Gaga 405 (520)
T KOG0359|consen 327 SVDDLTPDYLGY-AGLVYEYTLGEEKFTFIEKCNNPSSVTILIKGPNKHTITQIKDAIRDGLRAVKNTLEDKCGIPGAGA 405 (520)
T ss_pred ccccCChhhccc-cceeEEeeccceeeEeeecCCCCcceEEEEeCCccchHHHHHHHHhhHHHHHHHHhhhcccccCchH
Confidence 999999999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhccCCCchhHHHHHHHHHhhhhHHHHHHhcCCCHHHHHHHHHHHhhCCCCceEEEeCCCCcccccccC
Q 036490 414 TELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEG 493 (557)
Q Consensus 414 ~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~~~~~~~~~~Gid~~~g~i~d~~~~ 493 (557)
+|..++.+|+....+.+++.++++++|++||..+|++|+.|+|+|..+.+.+|...|..+ .+|+|+.+|+..+....
T Consensus 406 ~~va~~~~lr~~k~~vkgra~~g~~afa~all~ipk~La~nsg~D~qe~l~~l~~e~~~~---~~g~dl~~g~~~~~~~~ 482 (520)
T KOG0359|consen 406 FEVALGRHLRESKKSVKGRAYLGVKAFANALLVIPKTLAKNSGLDEQETLVSLKKEHEVT---LRGLDLFRGEECDPSRK 482 (520)
T ss_pred HHHHHHHHHHHhhhccCchhhhhHHHHHhhhhhhhHHHHHhcCCchHHHHHHHHHhhhhh---hcccccccCCccchhhc
Confidence 999999999988888999999999999999999999999999999999999999888644 45999999999999999
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHhhhhhhcC
Q 036490 494 KIWDAYNVKAQTFKTAIEAACMLLRIDDIVSG 525 (557)
Q Consensus 494 gi~dp~~vk~~~l~~A~e~a~~lL~id~ii~~ 525 (557)
||||.+.||++.|..++-+|+.||-+|+|+.+
T Consensus 483 gi~Dny~v~~~~l~s~~via~nlLlvDEi~rA 514 (520)
T KOG0359|consen 483 GIYDNYSVKKQLLRSEAVIATNLLLVDEIIRA 514 (520)
T ss_pred cccchHHHHHHHhhhhHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999976
No 41
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.3e-69 Score=512.81 Aligned_cols=385 Identities=37% Similarity=0.582 Sum_probs=362.8
Q ss_pred CCCccccccc--cccccchHHHHHHHHHHHHHHHHhhhcCCcccccceeecCCCCEEEeccHHHHhhhccccChHHHHHH
Q 036490 2 HSPVLVLKDS--LKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMI 79 (557)
Q Consensus 2 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iT~DG~tIl~~l~~~hP~a~ll~ 79 (557)
.+|+.+++++ .+...|.++.++++.+..++++++++|+||+|++|+++.+.|++++|||| .|++++++.
T Consensus 9 ~~~~iiLrDQd~~~Ri~G~ea~Ks~I~agkaVA~~lrtSLGPkGlDK~l~~pdgditvtndg---------d~~IakLmv 79 (400)
T KOG0357|consen 9 GRPFIILRDQERKDRLFGLDAVKSHIGAAKAVARILRTSLGPKGLDKMLVSPDGDITVTNDG---------VHQIAKLIV 79 (400)
T ss_pred cCceEEeeeccCCchhhHHHHhhhhhHHHHHHHHHHHhhcCccccccccccCCCCceeeecc---------chHHHHHHH
Confidence 4788777765 46678999999999999999999999999999999999999999999999 789999999
Q ss_pred HHHHhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhccccCCCCcHHHHHHHHHHhhh
Q 036490 80 ELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAMPIDANDRATVLGLVKSCIG 159 (557)
Q Consensus 80 ~~~~~~~~~~GDGttt~viL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~i~~~~~~~l~~va~t~l~ 159 (557)
..+..|+.++|||||.+++|++++++++.+++.+|+||..|.+||..+.+.+++.|++.+.+++
T Consensus 80 ~LS~sqd~eIgdGtTgVvvLa~alleqa~~li~~~ihpiki~~g~e~~~~~av~~l~~i~~~~e---------------- 143 (400)
T KOG0357|consen 80 ILSKSQDDEIGDGTTGVVVLAGALLEQAHELIDRGIHPIKIAQGYEKAKVVAVEHLDEISDPFE---------------- 143 (400)
T ss_pred HhcccchhhhccCCcccEEecccchHhHHhhcccccchhHHHHhhhhHHHhhhhhhhhhccccc----------------
Confidence 9999999999999999999999999999999999999999999999998888777766544332
Q ss_pred ccccchhHHHHHHHHHHHHhhcccccCCCccccCcccceEEEEecCCCCCCcEEEEeEEEeccccCCCCCcccccCceEE
Q 036490 160 TKFTSQFGDLLADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRII 239 (557)
Q Consensus 160 sk~~~~~~~~ls~lv~~a~~~v~~~~~~g~~~~d~~~~I~I~~i~G~~~~~S~li~Givl~~~~~~~~~~~~~~~n~~Il 239 (557)
T Consensus 144 -------------------------------------------------------------------------------- 143 (400)
T KOG0357|consen 144 -------------------------------------------------------------------------------- 143 (400)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecccccccccccceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCCeeEecCChhH
Q 036490 240 LLDSPLEYKKGENQTNAELVKEEDWGVMLKIEEDYIENLCMQIVKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTD 319 (557)
Q Consensus 240 l~~~~Le~~k~~~~~~~~i~~~~~l~~~~~~E~~~i~~~v~~i~~~~~~lIi~~~~i~~~al~~L~~~~I~~v~~v~~~~ 319 (557)
+.++++++.+.|+++++|+|++|+++-++|.+|+..+++||...+
T Consensus 144 -----------------------------------f~emi~~vK~~ga~l~icqwgfddeanhll~~n~lpavrwVGGpE 188 (400)
T KOG0357|consen 144 -----------------------------------FEEMIQQIKETGANLAICQWGFDDEANHLLLQNNLPAVRWVGGPE 188 (400)
T ss_pred -----------------------------------HHHHHHHHHhhCCcEEEEecccCchhhhHHhhcCCCceeecCCcc
Confidence 226778999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCccccCCCCCCCCCcCCccceEEEEEEC--ceEEEEEEecCCCCeEEEEEccCCHHHHHHHHHHHHHHHHH
Q 036490 320 NNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIG--DEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSV 397 (557)
Q Consensus 320 le~Ia~~tGa~iis~~~~l~~~~lG~~~~~v~~~~ig--~~~~~~l~~~~~~~~~TIll~G~t~~~l~e~~~~l~dal~~ 397 (557)
+|.|+.+||++|++++++|+++.||+ |+.|++..|| ++++..+++|++++.+||.+||.++.+++|.||++|||||+
T Consensus 189 iEliAiaT~grIVprF~eL~~~kLG~-aglVrE~sfgttkdkmlviEqc~nskaVTifvRg~Nkmii~EakrslhdalCv 267 (400)
T KOG0357|consen 189 IELIAIATGGRIVPRFSELTAEKLGF-AGLVREISFGTTKDKMLVIEQCKNSKAVTIFVRGGNKMIIEEAKRSLHDALCV 267 (400)
T ss_pred eEEEEeecCCeeeccHhhhCHhhccc-cceEEEEecccccceEEEEEecCCCceEEEEEecCcceeHHHHHHHhhhhHHH
Confidence 99999999999999999999999999 9999999998 58999999999999999999999999999999999999999
Q ss_pred HHHHHhCCccccCCCchHHHHHHHHHHhhccCCCchhHHHHHHHHHhhhhHHHHHHhcCCCHHHHHHHHHHHhhCCCCce
Q 036490 398 ARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAW 477 (557)
Q Consensus 398 ~~~~l~~g~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~~~~~~~~~ 477 (557)
+|+++++.++|+|||++|+.||-.+.+-+.++++.+|+++++|++||++||..|++|||++|++.++++++.+.......
T Consensus 268 irnlird~rivYgGGaaEiscslav~~ead~~~g~eqya~rafa~ale~ipmalaensgl~pi~~ls~~ka~q~~~~~~~ 347 (400)
T KOG0357|consen 268 IRNLIRDNRVVYGGGAAEISCALAVSQEADKIPGIEQYAFRAFADALESIPMALAENSGLDPIETLSDVKARQVKEMNPA 347 (400)
T ss_pred HHHHhhcCeeEecCchHHhhhhhHhhHhhccCCcHHHHHHHHHHHHHhhcchhhhhccCCCchhhhhHhHHHHHHhcCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998876555588
Q ss_pred EEEeCCCCcccccccCccccchHHHHHHHHHHHHHHHHHHhhhhhhcCCc
Q 036490 478 IGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIK 527 (557)
Q Consensus 478 ~Gid~~~g~i~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~id~ii~~~~ 527 (557)
+|+|+.-..-.||.+.+|+|++..|++.+..|++++.|+|+||+++.+..
T Consensus 348 lGidcl~~G~nDMk~~~vie~l~~KkqQi~laTQ~vrMiLKiddv~~~~~ 397 (400)
T KOG0357|consen 348 LGIDCLHKGTNDMKEQHVIETLIGKKQQISLATQMVRMILKIDDVRKPGE 397 (400)
T ss_pred cCcchhccCchhhhhhccHHHhhhhHHHHHHHHHHHHHhhhccceecCCC
Confidence 99999999999999999999999999999999999999999999987643
No 42
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-58 Score=470.44 Aligned_cols=460 Identities=23% Similarity=0.315 Sum_probs=402.4
Q ss_pred ccccchHHHHHHHHHHHHHHHHhhhcCCcccccceeecCCCCEEEeccHHHHhhhccccCh----HHHHHHHHHHhhhhh
Q 036490 13 KRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHP----AAKSMIELSRTQDEE 88 (557)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iT~DG~tIl~~l~~~hP----~a~ll~~~~~~~~~~ 88 (557)
+..+|.++|...++++..|+++|..|+||+||+++|.+..|.|.|||||.|+++++.+.++ +|+++++.+.+.++.
T Consensus 18 ~i~fg~~~r~~ll~Gv~~Ladav~~TlgpKgrnViieq~~gsPkvtkdgvTva~si~l~d~~~n~gaklvq~va~~tN~~ 97 (550)
T KOG0356|consen 18 DIKFGKDVRAKLLQGVDLLADAVAVTLGPKGRNVIIEQSWGSPKVTKDGVTVAKSIELKDKYENIGAKLVQDVANNTNEE 97 (550)
T ss_pred ccccCHHHHHHHHhhHHHHHHHhhhhccCCcceEEcccccCCCceecCCceeeccccccchhhhhccHHHHHHHhhccCc
Confidence 3578999999999999999999999999999999999999999999999999999998765 899999999999999
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhccccCCCCcHHHHHHHHHHhhhccccchhHH
Q 036490 89 VGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAMPIDANDRATVLGLVKSCIGTKFTSQFGD 168 (557)
Q Consensus 89 ~GDGttt~viL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~i~~~~~~~l~~va~t~l~sk~~~~~~~ 168 (557)
.||||||+++|++++..++.+-+.+|.+|..+.+|+..+.+.+.+.|.+++++++ ..+.+.+++..+ .+.+.
T Consensus 98 agdGtttatvlar~i~~eg~~~v~~G~npv~irrGi~~av~~vv~~L~k~sk~Vt--t~eeIaqVAtiS------AngD~ 169 (550)
T KOG0356|consen 98 AGDGTTTATVLARAIAKEGFEKVAKGANPVEIRRGIMLAVDAVVDELKKMSKPVT--TPEEIAQVATIS------ANGDK 169 (550)
T ss_pred cccCcchHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHhCCCCC--CHHHHHHHHhhh------cCCcH
Confidence 9999999999999999999999999999999999999999999999999999998 578899999865 56789
Q ss_pred HHHHHHHHHHhhcccccCCCccccCcccceEEEEecCCCCC-CcEEEEeEEEeccccCCC------CCcccccCceEEEE
Q 036490 169 LLADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLE-DSRVLKGVMFNKDVVAPG------KMRRKIVNPRIILL 241 (557)
Q Consensus 169 ~ls~lv~~a~~~v~~~~~~g~~~~d~~~~I~I~~i~G~~~~-~S~li~Givl~~~~~~~~------~~~~~~~n~~Ill~ 241 (557)
.+.+++.+|+.++++ +|. |.|+ .|.... +.++++|+.|+++|.+|. ....+++||++++.
T Consensus 170 ~ig~li~~a~~kvG~---~GV--------Itv~--~gkt~~delev~eGmkfdrGyiSPyfi~~~k~~~~e~e~~~~ll~ 236 (550)
T KOG0356|consen 170 EIGNLISDAMKKVGR---KGV--------ITVK--DGKTLEDELEVIEGMKFDRGYISPYFITSSKKQKVEFENALLLLS 236 (550)
T ss_pred HHHHHHHHHHHHhCc---CCe--------EEee--cCCccccchhhhhcccccccccCccccccchhhhhhhhhhhhhhh
Confidence 999999999999986 564 7774 476664 667999999999999862 34557899999998
Q ss_pred ecccccccccccceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCC------e-----
Q 036490 242 DSPLEYKKGENQTNAELVKEEDWGVMLKIEEDYIENLCMQIVKFKPDLVITEKGLSDLACHYLSKAGV------S----- 310 (557)
Q Consensus 242 ~~~Le~~k~~~~~~~~i~~~~~l~~~~~~E~~~i~~~v~~i~~~~~~lIi~~~~i~~~al~~L~~~~I------~----- 310 (557)
+.+++ +.+++- +.++.-.....++++.+.+++.++|..|.-|+. .
T Consensus 237 ~kki~-------------~v~~iv-----------p~LE~A~~~~~PLliIAeDi~~eaL~tLIlNkLk~glqV~AvKap 292 (550)
T KOG0356|consen 237 EKKIS-------------SVQSIV-----------PALELALAKRRPLLIIAEDIDGEALATLVLNKLKGGLQVVAVKAP 292 (550)
T ss_pred hhhhh-------------HHHHHh-----------HHHHHhhhccCceEEEehhcchhHHHHHHhhhhccceeEEEEecC
Confidence 87754 334433 555666677789999999999999999987742 2
Q ss_pred eEecCChhHHHHHHHHhCCcccc------CCCCCCCCCcCCccceEEEEEEC----------------------------
Q 036490 311 AIRRLRKTDNNRIAKACGAVIVN------RPDELQESDVGTGAGLFEVKKIG---------------------------- 356 (557)
Q Consensus 311 ~v~~v~~~~le~Ia~~tGa~iis------~~~~l~~~~lG~~~~~v~~~~ig---------------------------- 356 (557)
.|+.-++..+.+|+.+||++++. +++..+..++|. |+.+.+..-.
T Consensus 293 gfGdnrk~~l~Diai~Tg~~v~~~e~~~l~le~~~~~dLG~-~~evvvtkd~t~ll~g~~~~~~v~~rIeqik~~~e~t~ 371 (550)
T KOG0356|consen 293 GFGDNRKNLLKDIAILTGATVFGEELSTLNLEDAKLEDLGE-VGEVVVTKDDTMLLKGKGNKAQVEGRIEQIKEMIEETT 371 (550)
T ss_pred CCcchHHHhhhHHHHHhhhhhhccchhhcccccCchhhcCc-ceeEEEecCcceeeCCCCCHHHHHHHHHHHHHHHHhhh
Confidence 24667778899999999999886 345667788998 9888776420
Q ss_pred --------ceEEEEEEecCCCCeEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHhCCccccCCCchHHHHHHHHHHhhcc
Q 036490 357 --------DEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSS 428 (557)
Q Consensus 357 --------~~~~~~l~~~~~~~~~TIll~G~t~~~l~e~~~~l~dal~~~~~~l~~g~vvpGGG~~e~~l~~~L~~~~~~ 428 (557)
++|...|. +.+++|.++|.++.+++|.+.+++|||+++++++++| +|||||+++++|+..|.+....
T Consensus 372 ~~ye~ekl~er~a~ls----~gvavi~vGg~se~Ev~ekk~rv~dalnat~aaveeG-ivpGGG~all~~~~~l~~lk~~ 446 (550)
T KOG0356|consen 372 SDYEKEKLNERLAKLS----GGVAVIKVGGHSEVEVNEKKDRVEDALNATRAAVEEG-IVPGGGTALLRAIPVLDELKAT 446 (550)
T ss_pred hhhhHhHHHHHHHHhc----CCeEEEEecCcchhhhhhhhhhHHHHHHHHHHHhhcC-cccCCchHHHHhhhhhhhcccc
Confidence 12333333 5789999999999999999999999999999999999 9999999999999999987653
Q ss_pred CCCchhHHHHHHHHHhhhhHHHHHHhcCCCHHHHHHHHHHHhhCCCCceEEEeCCCCcccccccCccccchHHHHHHHHH
Q 036490 429 IEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKT 508 (557)
Q Consensus 429 ~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~~~~~~~~~~Gid~~~g~i~d~~~~gi~dp~~vk~~~l~~ 508 (557)
.+..++.+++++.+||..|.++++.|||.|+..++.|++. ..+|||..+|++.||.+.||+||+.|.+.+|..
T Consensus 447 ~~~~~k~G~eiv~~Al~~P~~~IakNAGvdg~~vv~Kv~~-------~~~gyda~~~ey~dlv~~GiidP~kVvr~al~~ 519 (550)
T KOG0356|consen 447 NNFDQKVGVEIVKKALRLPAQTIAKNAGVDGSVVVEKVLN-------DDYGYDAAKGEYVDLVEAGIIDPTKVVRTALTD 519 (550)
T ss_pred cchHhhhhHHHHHHHHhhhHHHHHHhcCCchHHHHHHHHh-------hhhhhhhhcccHHHHHhccCCChHHHHHHhhhh
Confidence 4456778899999999999999999999999999999982 269999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhcCCccCC
Q 036490 509 AIEAACMLLRIDDIVSGIKKKQ 530 (557)
Q Consensus 509 A~e~a~~lL~id~ii~~~~~~~ 530 (557)
|..+|++|++++.+|...|++.
T Consensus 520 a~~vasll~tte~vvteipk~~ 541 (550)
T KOG0356|consen 520 AAGVASLLTTTEAVVTEIPKEE 541 (550)
T ss_pred hhHHHHHHhhheeEEEeccccc
Confidence 9999999999999999888766
No 43
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=100.00 E-value=1e-39 Score=322.28 Aligned_cols=235 Identities=33% Similarity=0.581 Sum_probs=216.3
Q ss_pred chhHHHHHHHHHHHHhhcccccCCCccccCcccceEEEEecCCCCCCcEEEEeEEEeccccCCCCCcccccCceEEEEec
Q 036490 164 SQFGDLLADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDS 243 (557)
Q Consensus 164 ~~~~~~ls~lv~~a~~~v~~~~~~g~~~~d~~~~I~I~~i~G~~~~~S~li~Givl~~~~~~~~~~~~~~~n~~Ill~~~ 243 (557)
+.|.++|++++++|+..+.++..++ ..+|+.++|+|++++|+++++|++++|+++++++.++ .||+.++||||+++++
T Consensus 17 ~~~~~~ls~l~v~Av~~v~~~~~~~-~~~di~~~I~I~ki~Ggs~~dS~li~Gvvi~k~~~~~-~m~~~i~n~kIlll~~ 94 (261)
T cd03334 17 ESWLDILLPLVWKAASNVKPDVRAG-DDMDIRQYVKIKKIPGGSPSDSEVVDGVVFTKNVAHK-RMPSKIKNPRILLLQG 94 (261)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccC-CccChhHceEEEEecCCCHHHcEEEeeEEEeCCCCCc-cCCcccCCCcEEEEee
Confidence 4588999999999999986421112 3578766799999999999999999999999999998 8999999999999999
Q ss_pred ccccccccccceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCCeeEecCChhHHHHH
Q 036490 244 PLEYKKGENQTNAELVKEEDWGVMLKIEEDYIENLCMQIVKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRI 323 (557)
Q Consensus 244 ~Le~~k~~~~~~~~i~~~~~l~~~~~~E~~~i~~~v~~i~~~~~~lIi~~~~i~~~al~~L~~~~I~~v~~v~~~~le~I 323 (557)
+|++++++. +.+++++++++|++++++++++|.+.|++||+++++|++.+++||.++||++++++++++|+||
T Consensus 95 ~Le~~~~~~-------~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~~k~I~~~a~~~l~k~gI~~v~~v~~~dl~rI 167 (261)
T cd03334 95 PLEYQRVEN-------KLLSLDPVILQEKEYLKNLVSRIVALRPDVILVEKSVSRIAQDLLLEAGITLVLNVKPSVLERI 167 (261)
T ss_pred eeccccccC-------CHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCccCHHHHHHHHHCCCEEEEecCHHHHHHH
Confidence 999988764 4578999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCccccCC-CCCCCCCcCCccceEEEEEECc-----eEEEEEEecCCCCeEEEEEccCCHHHHHHHHHHHHHHHHH
Q 036490 324 AKACGAVIVNRP-DELQESDVGTGAGLFEVKKIGD-----EFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSV 397 (557)
Q Consensus 324 a~~tGa~iis~~-~~l~~~~lG~~~~~v~~~~ig~-----~~~~~l~~~~~~~~~TIll~G~t~~~l~e~~~~l~dal~~ 397 (557)
+++|||++++++ ++++++.+|+ |+.|+++++|+ ++|++|++|..++++||+|||+|+..++|+||+++||+++
T Consensus 168 a~~tGa~ii~~i~~~~~~~~lG~-~~~v~~~~ig~~~~~~~~~~~~~~~~~~~~~TIlLRG~t~~~lde~eR~i~Dal~v 246 (261)
T cd03334 168 SRCTGADIISSMDDLLTSPKLGT-CESFRVRTYVEEHGRSKTLMFFEGCPKELGCTILLRGGDLEELKKVKRVVEFMVFA 246 (261)
T ss_pred HHHhCCEEecChhhhcCcccCcC-cceEEEEEecCcCCCceeEEEEecCCCCceeEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 999999999994 5889999999 99999999996 6999999999999999999999999999999999999999
Q ss_pred HHHHHhCCccc
Q 036490 398 ARNIIKNPKLV 408 (557)
Q Consensus 398 ~~~~l~~g~vv 408 (557)
++++..+++++
T Consensus 247 ~~~~~le~~~~ 257 (261)
T cd03334 247 AYHLKLETSFL 257 (261)
T ss_pred HHHHHHhHHHH
Confidence 99999887544
No 44
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=100.00 E-value=1.9e-35 Score=284.32 Aligned_cols=208 Identities=47% Similarity=0.765 Sum_probs=195.7
Q ss_pred HHHHHHHHHhhhccccchhHHHHHHHHHHHHhhcccccCCCccccCcccceEEEEecCCCCCCcEEEEeEEEeccccCCC
Q 036490 148 ATVLGLVKSCIGTKFTSQFGDLLADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPG 227 (557)
Q Consensus 148 ~~l~~va~t~l~sk~~~~~~~~ls~lv~~a~~~v~~~~~~g~~~~d~~~~I~I~~i~G~~~~~S~li~Givl~~~~~~~~ 227 (557)
+.|.++++|+++||+ +.|.+.+++++++|+..++++. + .++. ++|+|++++|++.++|++++|++|++++.++
T Consensus 2 ~~l~~ia~ts~~sk~-~~~~~~l~~l~~~Av~~v~~~~--~--~~~~-~~I~i~~~~gg~~~ds~li~Gv~~~~~~~~~- 74 (209)
T cd03333 2 ELLLQVATTSLNSKL-SSWDDFLGKLVVDAVLKVGPDN--R--MDDL-GVIKVEKIPGGSLEDSELVVGVVFDKGYASP- 74 (209)
T ss_pred hHHHHHHHHHhccch-hhHHHHHHHHHHHHHHHhhccC--C--CCch-HHEEEEEecCcChhhceeEeeEEEeccccCC-
Confidence 468999999999999 9999999999999999997531 1 2333 4799999999999999999999999999999
Q ss_pred CCcccccCceEEEEecccccccccccceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHc
Q 036490 228 KMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWGVMLKIEEDYIENLCMQIVKFKPDLVITEKGLSDLACHYLSKA 307 (557)
Q Consensus 228 ~~~~~~~n~~Ill~~~~Le~~k~~~~~~~~i~~~~~l~~~~~~E~~~i~~~v~~i~~~~~~lIi~~~~i~~~al~~L~~~ 307 (557)
.|++.++||+|++++++|++ +|+++++|++.++++|.++
T Consensus 75 ~m~~~~~n~~Ill~~~~le~-----------------------------------------vii~~~~I~~~al~~l~~~ 113 (209)
T cd03333 75 YMPKRLENAKILLLDCPLEY-----------------------------------------VVIAEKGIDDLALHYLAKA 113 (209)
T ss_pred CCCeEcCCCcEEEEeCCeeE-----------------------------------------EEEecCcccHHHHHHHHHC
Confidence 89999999999999999985 9999999999999999999
Q ss_pred CCeeEecCChhHHHHHHHHhCCccccCCCCCCCCCcCCccceEEEEEECceEEEEEEecCCCCeEEEEEccCCHHHHHHH
Q 036490 308 GVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEV 387 (557)
Q Consensus 308 ~I~~v~~v~~~~le~Ia~~tGa~iis~~~~l~~~~lG~~~~~v~~~~ig~~~~~~l~~~~~~~~~TIll~G~t~~~l~e~ 387 (557)
||++++++++++|+||+++|||++++++++++++.+|+ |+.+++.++|++++++|++|..+..|||+|||+|+.+++|.
T Consensus 114 ~I~~v~~~~~~~l~~ia~~tga~ii~~~~~~~~~~lG~-~~~v~~~~~~~~~~~~~~~~~~~~~~tIllrG~t~~~l~e~ 192 (209)
T cd03333 114 GIMAVRRVKKEDLERIARATGATIVSSLEDLTPEDLGT-AELVEETKIGEEKLTFIEGCKGGKAATILLRGATEVELDEV 192 (209)
T ss_pred CCEEEEeCCHHHHHHHHHHHCCEEecccccCChhhcee-eeEEEEEEECCeEEEEEEcCCCCCEEEEEEECCCHhHHHHH
Confidence 99999999999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhC
Q 036490 388 ERNLQDAMSVARNIIKN 404 (557)
Q Consensus 388 ~~~l~dal~~~~~~l~~ 404 (557)
||+++||++++++++++
T Consensus 193 kr~l~dal~~~~~~~~~ 209 (209)
T cd03333 193 KRSLHDALCAVRAAVEE 209 (209)
T ss_pred HHHHHHHHHHHHHHhhC
Confidence 99999999999999864
No 45
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=99.91 E-value=1.2e-23 Score=234.84 Aligned_cols=239 Identities=31% Similarity=0.528 Sum_probs=215.1
Q ss_pred hhHHHHHHHHHHHHhhcccccCCCccccCcccceEEEEecCCCCCCcEEEEeEEEeccccCCCCCcccccCceEEEEecc
Q 036490 165 QFGDLLADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSP 244 (557)
Q Consensus 165 ~~~~~ls~lv~~a~~~v~~~~~~g~~~~d~~~~I~I~~i~G~~~~~S~li~Givl~~~~~~~~~~~~~~~n~~Ill~~~~ 244 (557)
.|.+.+..++.+|+..+.++...| ..+|+.++|+|++++||...+|++++|+++.+.++++ .|..++++|||+++.++
T Consensus 332 ~W~~ii~~L~~eaa~~~kp~~~~~-~~md~~~YVkvK~I~~g~~~dS~vi~Gvv~sKn~~~k-~M~~~~e~prilll~g~ 409 (1598)
T KOG0230|consen 332 EWLDIITSLCWEAANLLKPDTDSG-GLMDPGNYVKVKCVAGGSRVDSEVIKGVVCSKNVAHK-RMATKYENPRILLLGGP 409 (1598)
T ss_pred hHHHHHHHHHHHHHHhcCcCcccC-CCcCcccceEEEEecCCCcccceeeeEEEeecchhhh-hhhhhccCCceEEEecc
Confidence 589999999999999998754323 4578888999999999999999999999999999998 99999999999999999
Q ss_pred cccccccccceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCCeeEecCChhHHHHHH
Q 036490 245 LEYKKGENQTNAELVKEEDWGVMLKIEEDYIENLCMQIVKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIA 324 (557)
Q Consensus 245 Le~~k~~~~~~~~i~~~~~l~~~~~~E~~~i~~~v~~i~~~~~~lIi~~~~i~~~al~~L~~~~I~~v~~v~~~~le~Ia 324 (557)
|+|++-..+. ..++.++.+|.++++..+.+|...++++++++++|++.|+++|...+|.++-++++.-|+||+
T Consensus 410 leyqrisn~l-------sS~etvlqqE~e~lk~~varI~s~~p~vllVeksVS~~aqe~L~~k~I~lvlnvK~s~leRIs 482 (1598)
T KOG0230|consen 410 LEYQRISNQL-------SSIETVLQQEKEYLKKVVARIESLRPDVLLVEKSVSRIAQELLLDKGISLVLNVKRSLLERIS 482 (1598)
T ss_pred hhhhhhhccc-------cchHHHHhhHHHHHHHHHHHHHhcCCCeEEEechHHHHHHHHhhccCeEEEEeccHHHHHHHH
Confidence 9998644332 256677778999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCccccCCCCCCCCCcCCccceEEEEEEC-----ceEEEEEEecCCCCeEEEEEccCCHHHHHHHHHHHHHHHHHHH
Q 036490 325 KACGAVIVNRPDELQESDVGTGAGLFEVKKIG-----DEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVAR 399 (557)
Q Consensus 325 ~~tGa~iis~~~~l~~~~lG~~~~~v~~~~ig-----~~~~~~l~~~~~~~~~TIll~G~t~~~l~e~~~~l~dal~~~~ 399 (557)
++|||.|+++++.++...+|+ |+.|++.+.- .+.++||++|+....|||++||....++++.|+.++-++.+++
T Consensus 483 R~tga~I~~siDslt~~klg~-C~~F~v~~~~e~hk~sKTlmffegc~~~lG~TiLLrG~~~~eLkkVK~Vvq~~v~aay 561 (1598)
T KOG0230|consen 483 RCTGADIVPSVDSLTSQKLGY-CELFRVENYVEEHKPSKTLMFFEGCPKPLGCTILLRGDSLEELKKVKHVVQYLVFAAY 561 (1598)
T ss_pred HHhcCceecchhhhhccccCC-CccHhhhhhhhcccchhhhHHhhcCCCCCCceEEecCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 9999887764 4678999999999999999999999999999999999999999
Q ss_pred HHHhCCccccCCCc
Q 036490 400 NIIKNPKLVPGGGA 413 (557)
Q Consensus 400 ~~l~~g~vvpGGG~ 413 (557)
++.-+-.++.-=|+
T Consensus 562 ~l~LE~SflaDe~a 575 (1598)
T KOG0230|consen 562 HLALETSFLADEGA 575 (1598)
T ss_pred HHHHhhhhhhccCC
Confidence 88766556655554
No 46
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=49.65 E-value=68 Score=25.65 Aligned_cols=38 Identities=18% Similarity=0.270 Sum_probs=31.1
Q ss_pred HHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCCeeEecCC
Q 036490 278 LCMQIVKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLR 316 (557)
Q Consensus 278 ~v~~i~~~~~~lIi~~~~i~~~al~~L~~~~I~~v~~v~ 316 (557)
+.+.+...+++++++ +.+.+.+...|.++||.++....
T Consensus 45 ~~~~l~~~~v~~li~-~~iG~~~~~~L~~~gI~v~~~~~ 82 (94)
T PF02579_consen 45 IAKFLAEEGVDVLIC-GGIGEGAFRALKEAGIKVYQGAG 82 (94)
T ss_dssp HHHHHHHTTESEEEE-SCSCHHHHHHHHHTTSEEEESTS
T ss_pred HHHHHHHcCCCEEEE-eCCCHHHHHHHHHCCCEEEEcCC
Confidence 335566689999998 56899999999999999998733
No 47
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=45.79 E-value=60 Score=26.51 Aligned_cols=39 Identities=21% Similarity=0.251 Sum_probs=32.3
Q ss_pred HHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCCeeEecCC
Q 036490 277 NLCMQIVKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLR 316 (557)
Q Consensus 277 ~~v~~i~~~~~~lIi~~~~i~~~al~~L~~~~I~~v~~v~ 316 (557)
...+.|...++++|++. ++.+.+.+.|..+||.++....
T Consensus 54 ~~~~~l~~~~v~~vi~~-~iG~~~~~~l~~~gI~v~~~~~ 92 (103)
T cd00851 54 KAAEFLADEGVDVVIVG-GIGPRALNKLRNAGIKVYKGAE 92 (103)
T ss_pred HHHHHHHHcCCCEEEeC-CCCcCHHHHHHHCCCEEEEcCC
Confidence 34455666899999995 6999999999999999987665
No 48
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=45.23 E-value=96 Score=26.85 Aligned_cols=51 Identities=20% Similarity=0.154 Sum_probs=38.2
Q ss_pred HHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCCeeEecCChhHHHHHHHHhCC
Q 036490 278 LCMQIVKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGA 329 (557)
Q Consensus 278 ~v~~i~~~~~~lIi~~~~i~~~al~~L~~~~I~~v~~v~~~~le~Ia~~tGa 329 (557)
..+.|.+.|+++|++. .+.+-+.++|...||-++.-.+.+.=+.|.....+
T Consensus 57 ~a~~l~~~gvdvvi~~-~iG~~a~~~l~~~GIkv~~~~~~~V~e~i~~~~~g 107 (121)
T COG1433 57 IAELLVDEGVDVVIAS-NIGPNAYNALKAAGIKVYVAPGGTVEEAIKAFLEG 107 (121)
T ss_pred HHHHHHHcCCCEEEEC-ccCHHHHHHHHHcCcEEEecCCCCHHHHHHHHhcC
Confidence 4567889999999995 78999999999999998876664333344444433
No 49
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=36.86 E-value=97 Score=25.12 Aligned_cols=37 Identities=22% Similarity=0.254 Sum_probs=31.1
Q ss_pred HHHHHHcCCcEEEeCCCCCHHHHHHHHHcCCeeEecCC
Q 036490 279 CMQIVKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLR 316 (557)
Q Consensus 279 v~~i~~~~~~lIi~~~~i~~~al~~L~~~~I~~v~~v~ 316 (557)
.+.+...++++|++. ++.+.++..|.+.||.++....
T Consensus 54 ~~~l~~~~v~~vi~~-~iG~~a~~~l~~~gI~v~~~~~ 90 (102)
T cd00562 54 ARLLALEGCDAVLVG-GIGGPAAAKLEAAGIKPIKAAE 90 (102)
T ss_pred HHHHHHCCCcEEEEc-ccCccHHHHHHHcCCEEEEcCC
Confidence 345567899999996 5999999999999999987665
No 50
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=31.71 E-value=2.1e+02 Score=23.02 Aligned_cols=51 Identities=10% Similarity=0.023 Sum_probs=37.4
Q ss_pred HHHHHHHHHcCCcEEEeCCCCCHHHHH----HHHHcCCeeEecCChhHHHHHHHHhCC
Q 036490 276 ENLCMQIVKFKPDLVITEKGLSDLACH----YLSKAGVSAIRRLRKTDNNRIAKACGA 329 (557)
Q Consensus 276 ~~~v~~i~~~~~~lIi~~~~i~~~al~----~L~~~~I~~v~~v~~~~le~Ia~~tGa 329 (557)
++-++.+.+-.+.+++.++++++.... +|.++||.++.--++.+| -++||.
T Consensus 19 kqt~Kai~kg~~~~v~iA~Da~~~vv~~l~~lceek~Ip~v~V~s~~~L---GkAcgi 73 (84)
T PRK13600 19 KETLKALKKDQVTSLIIAEDVEVYLMTRVLSQINQKNIPVSFFKSKHAL---GKHVGI 73 (84)
T ss_pred HHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCHHHH---HHHhCC
Confidence 455666766778899999999987665 567789988876666665 556654
No 51
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=29.51 E-value=2.4e+02 Score=22.49 Aligned_cols=51 Identities=10% Similarity=0.057 Sum_probs=36.4
Q ss_pred HHHHHHHHcCCcEEEeCCCCCHHHHHH----HHHcCCeeEecCChhHHHHHHHHhCCc
Q 036490 277 NLCMQIVKFKPDLVITEKGLSDLACHY----LSKAGVSAIRRLRKTDNNRIAKACGAV 330 (557)
Q Consensus 277 ~~v~~i~~~~~~lIi~~~~i~~~al~~----L~~~~I~~v~~v~~~~le~Ia~~tGa~ 330 (557)
+.++.|.+-.+.+||++.+.++....- +..++|.+...-.+. .|.+++|-.
T Consensus 15 ~vlkaIk~gkakLViiA~Da~~~~~k~i~~~c~~~~Vpv~~~~t~~---eLG~A~G~~ 69 (82)
T PRK13601 15 QTLKAITNCNVLQVYIAKDAEEHVTKKIKELCEEKSIKIVYIDTMK---ELGVMCGID 69 (82)
T ss_pred HHHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHHhCCCCEEEeCCHH---HHHHHHCCc
Confidence 344566667889999999998877664 456799886555554 467777754
No 52
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=27.94 E-value=1.8e+02 Score=26.55 Aligned_cols=50 Identities=30% Similarity=0.347 Sum_probs=34.6
Q ss_pred HHHHHcCCcEEEeCCCCCHHHHHHHHHcCCeeE--ecCC-h----hHHHHHHHHhCC
Q 036490 280 MQIVKFKPDLVITEKGLSDLACHYLSKAGVSAI--RRLR-K----TDNNRIAKACGA 329 (557)
Q Consensus 280 ~~i~~~~~~lIi~~~~i~~~al~~L~~~~I~~v--~~v~-~----~~le~Ia~~tGa 329 (557)
+.|.+.+|+||+......+...+.|.+.|+.++ .... . +.++.++.++|-
T Consensus 54 E~l~~l~PDlii~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~lg~~~g~ 110 (195)
T cd01143 54 EKIVALKPDLVIVSSSSLAELLEKLKDAGIPVVVLPAASSLDEIYDQIELIGKITGA 110 (195)
T ss_pred HHHhccCCCEEEEcCCcCHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHHHHHhCC
Confidence 567788999999876666667788999998543 2221 2 346677777774
No 53
>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism]
Probab=26.68 E-value=33 Score=33.99 Aligned_cols=57 Identities=23% Similarity=0.317 Sum_probs=33.5
Q ss_pred EECceEEEEEEecCCCCeEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHhCCccccCCC
Q 036490 354 KIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGG 412 (557)
Q Consensus 354 ~ig~~~~~~l~~~~~~~~~TIll~G~t~~~l~e~~~~l~dal~~~~~~l~~g~vvpGGG 412 (557)
-||+..++++....+...|.|+-+..-..----.|++ -|++++|.+.+.|.++|||-
T Consensus 46 ~IGnTpliri~sLs~aTGcnIlaK~Ef~NPggS~KDR--vAl~iir~Aee~GkL~~gg~ 102 (391)
T KOG1481|consen 46 AIGNTPLIRINSLSNATGCNILAKAEFLNPGGSVKDR--VALYIIRTAEEKGKLVRGGT 102 (391)
T ss_pred hhCCCceEEeeccccccccchhhhhhccCCCCChhhh--hHHHHHHHHHHcCCcccCce
Confidence 3566666666655555566555321000000012232 28999999999999999973
No 54
>TIGR03659 IsdE heme ABC transporter, heme-binding protein isdE. This family of ABC substrate-binding proteins is observed primarily in close proximity with proteins localized to the cell wall and bearing the NEAT (NEAr Transporter, pfam05031) heme-binding domain. IsdE has been shown to bind heme and is involved in the process of scavenging heme for the purpose of obtaining iron.
Probab=26.26 E-value=1.6e+02 Score=29.23 Aligned_cols=51 Identities=22% Similarity=0.281 Sum_probs=38.7
Q ss_pred HHHHHcCCcEEEeCCCCCHHHHHHHHHcCCeeEe-cC-C----hhHHHHHHHHhCCc
Q 036490 280 MQIVKFKPDLVITEKGLSDLACHYLSKAGVSAIR-RL-R----KTDNNRIAKACGAV 330 (557)
Q Consensus 280 ~~i~~~~~~lIi~~~~i~~~al~~L~~~~I~~v~-~v-~----~~~le~Ia~~tGa~ 330 (557)
+.|...+|+|||.....++...+.|.+.+|.++- .. . .+.++.++.++|..
T Consensus 85 E~I~al~PDlIi~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~i~~lg~~~G~~ 141 (289)
T TIGR03659 85 EKIKSLKPTVVLSVTTLEEDLGPKFKQLGVEATFLNLTSVDGMKKSITELGEKYGRE 141 (289)
T ss_pred HHHhccCCcEEEEcCcccHHHHHHHHHcCCcEEEEcCCCHHHHHHHHHHHHHHhCCH
Confidence 6788889999999888888888899999986642 11 1 24577888888853
No 55
>cd01144 BtuF Cobalamin binding protein BtuF. These proteins have been shown to function as initial receptors in ABC transport of vitamin B12 (cobalamin) in eubacterial and some archaeal species. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=25.91 E-value=1.9e+02 Score=27.64 Aligned_cols=51 Identities=24% Similarity=0.325 Sum_probs=36.3
Q ss_pred HHHHHcCCcEEEeCCCCCHH-HHHHHHHcCCeeEecC--C----hhHHHHHHHHhCCc
Q 036490 280 MQIVKFKPDLVITEKGLSDL-ACHYLSKAGVSAIRRL--R----KTDNNRIAKACGAV 330 (557)
Q Consensus 280 ~~i~~~~~~lIi~~~~i~~~-al~~L~~~~I~~v~~v--~----~~~le~Ia~~tGa~ 330 (557)
+.|...+|+|||.....++. ..+.|.+.++.++-.. . .+.++.|+.++|..
T Consensus 51 E~i~~l~PDlIi~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~lg~~~g~~ 108 (245)
T cd01144 51 ERVLALKPDLVIAWDDCNVCAVVDQLRAAGIPVLVSEPQTLDDILADIRRLGTLAGRP 108 (245)
T ss_pred HHHHhCCCCEEEEecCCCHHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhCCh
Confidence 67888899999997655444 4788989998654321 2 24578888888864
No 56
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=25.75 E-value=70 Score=27.80 Aligned_cols=45 Identities=16% Similarity=0.291 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHcCCcEEEeCCCC--CHHHHHHHHHcCCeeEecC
Q 036490 271 EEDYIENLCMQIVKFKPDLVITEKGL--SDLACHYLSKAGVSAIRRL 315 (557)
Q Consensus 271 E~~~i~~~v~~i~~~~~~lIi~~~~i--~~~al~~L~~~~I~~v~~v 315 (557)
..+..++.++++...++++||++.+. ++..++.+.++++.+++--
T Consensus 66 ~~~~r~~~l~~l~~~~~P~iIvt~~~~~p~~l~e~a~~~~ipll~t~ 112 (127)
T PF02603_consen 66 DEEERKERLEKLFSYNPPCIIVTRGLEPPPELIELAEKYNIPLLRTP 112 (127)
T ss_dssp -HHHHCCHHHHHCTTT-S-EEEETTT---HHHHHHHHHCT--EEEES
T ss_pred CHHHHHHHHHHHhCCCCCEEEEECcCCCCHHHHHHHHHhCCcEEEcC
Confidence 34455678888889999988887755 7888899999999988643
No 57
>PRK07283 hypothetical protein; Provisional
Probab=25.75 E-value=2.7e+02 Score=22.92 Aligned_cols=50 Identities=12% Similarity=0.040 Sum_probs=37.0
Q ss_pred HHHHHHHHcCCcEEEeCCCCCHHHH----HHHHHcCCeeEecCChhHHHHHHHHhCC
Q 036490 277 NLCMQIVKFKPDLVITEKGLSDLAC----HYLSKAGVSAIRRLRKTDNNRIAKACGA 329 (557)
Q Consensus 277 ~~v~~i~~~~~~lIi~~~~i~~~al----~~L~~~~I~~v~~v~~~~le~Ia~~tGa 329 (557)
+..+.+.+-.+.+||.+.+.++... +.+..++|.++....+++ |..++|-
T Consensus 25 ~v~~aik~gk~~lVi~A~Das~~~~kk~~~~~~~~~Vp~~~~~t~~e---LG~a~Gk 78 (98)
T PRK07283 25 LVVKAIQSGQAKLVFLANDAGPNLTKKVTDKSNYYQVEVSTVFSTLE---LSAAVGK 78 (98)
T ss_pred HHHHHHHcCCccEEEEeCCCCHHHHHHHHHHHHHcCCCEEEeCCHHH---HHHHhCC
Confidence 3445666667899999999999888 556667999887766644 6777774
No 58
>PRK09534 btuF corrinoid ABC transporter substrate-binding protein; Reviewed
Probab=24.16 E-value=1.9e+02 Score=29.99 Aligned_cols=51 Identities=20% Similarity=0.340 Sum_probs=37.2
Q ss_pred HHHHHHcCCcEEEeCCCCCHHHHHHHHHcCCeeEecC---Ch----hHHHHHHHHhCC
Q 036490 279 CMQIVKFKPDLVITEKGLSDLACHYLSKAGVSAIRRL---RK----TDNNRIAKACGA 329 (557)
Q Consensus 279 v~~i~~~~~~lIi~~~~i~~~al~~L~~~~I~~v~~v---~~----~~le~Ia~~tGa 329 (557)
+|.|...+++|||......+...+.|.+.||.++..- .. +.++.|.+++|-
T Consensus 112 ~E~Il~l~PDLVi~~~~~~~~~~~~L~~~gi~V~~~~~~~~l~~i~~~i~~lG~i~G~ 169 (359)
T PRK09534 112 VEAVVGLDPDLVLAPNAVAGDTVTRLREAGITVFHFPAATSIEDVAEKTATIGRLTGN 169 (359)
T ss_pred HHHHhcCCCCEEEEcCCCchHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHHHHHhCC
Confidence 4788889999999876556667888999999875432 11 445677777775
No 59
>TIGR00129 fdhD_narQ formate dehydrogenase family accessory protein FdhD. FdhD in E. coli and NarQ in B. subtilis are required for the activity of formate dehydrogenase. The gene name in B. subtilis reflects the requirement of the neighboring gene narA for nitrate assimilation, for which NarQ is not required. In some species, the gene is associated not with a known formate dehydrogenase but with a related putative molybdopterin-binding oxidoreductase. A reasonable hypothesis is that this protein helps prepare a required cofactor for assembly into the holoenzyme.
Probab=24.07 E-value=1.1e+02 Score=29.74 Aligned_cols=43 Identities=12% Similarity=0.207 Sum_probs=37.5
Q ss_pred HHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCCeeEecCChhH
Q 036490 277 NLCMQIVKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTD 319 (557)
Q Consensus 277 ~~v~~i~~~~~~lIi~~~~i~~~al~~L~~~~I~~v~~v~~~~ 319 (557)
+++.+.+..|+++|++...-...+.++..+.||..++.++...
T Consensus 183 emv~Ka~~aGIpvlvS~sapT~lavelA~~~giTLigf~R~~r 225 (237)
T TIGR00129 183 EMVQKAARCGVPIIASKSAPTDLAIEVAEESNITLIGFARNGR 225 (237)
T ss_pred HHHHHHHHcCCCEEEEcccchHHHHHHHHHhCCEEEEEecCCc
Confidence 5778889999999999999999999999999999988776543
No 60
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=22.72 E-value=72 Score=34.06 Aligned_cols=40 Identities=30% Similarity=0.497 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHhCCccccCCCchHHHHHHHHHHhhcc
Q 036490 388 ERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSS 428 (557)
Q Consensus 388 ~~~l~dal~~~~~~l~~g~vvpGGG~~e~~l~~~L~~~~~~ 428 (557)
++.+.+|+..+|++ +.+-+|.|||+-+-.+...|+.+++.
T Consensus 216 ~~eL~~A~~lik~a-k~PlIvaGGGv~YS~A~~~L~af~E~ 255 (617)
T COG3962 216 ERELADAAALIKSA-KKPLIVAGGGVLYSGAREALRAFAET 255 (617)
T ss_pred HHHHHHHHHHHHhc-CCCEEEecCceeechHHHHHHHHHHh
Confidence 35677888888887 55679999999998888888887764
No 61
>PF07278 DUF1441: Protein of unknown function (DUF1441); InterPro: IPR009901 This entry is represented by Bacteriophage VT1-Sakai, H0025. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Enterobacterial proteins of around 160 residues in length. The function of this family is unknown.
Probab=22.46 E-value=5.1e+02 Score=23.40 Aligned_cols=67 Identities=13% Similarity=0.124 Sum_probs=48.1
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHhCCccccCCCchHHHHHHHHHHhhccCCCchhHHHHHHHHHhhhhHHHHHHhcCC
Q 036490 378 GASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGV 457 (557)
Q Consensus 378 G~t~~~l~e~~~~l~dal~~~~~~l~~g~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~ 457 (557)
.|.+..-.+++.-++.-..-++--.+-|.++|-. ...+.++ ..++++...|+++|-.|.+++|+
T Consensus 60 ~p~~m~p~dRK~w~qsE~eRlk~e~e~g~Lipa~--------eV~~~~s--------~~~Kav~q~LetlPD~LERd~gL 123 (152)
T PF07278_consen 60 DPDDMTPKDRKAWWQSENERLKFEKETGQLIPAE--------EVRREMS--------EMAKAVVQVLETLPDILERDAGL 123 (152)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHHHHHcccCcHH--------HHHHHHH--------HHHHHHHHHHHHhhHHHHhcCCC
Confidence 4444455577777777777788777888777744 2222222 35678999999999999999999
Q ss_pred CHH
Q 036490 458 NVI 460 (557)
Q Consensus 458 ~~~ 460 (557)
.+.
T Consensus 124 ~p~ 126 (152)
T PF07278_consen 124 PPE 126 (152)
T ss_pred CHH
Confidence 984
No 62
>PRK00724 formate dehydrogenase accessory protein; Reviewed
Probab=21.90 E-value=1.3e+02 Score=29.86 Aligned_cols=42 Identities=10% Similarity=0.135 Sum_probs=37.0
Q ss_pred HHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCCeeEecCChh
Q 036490 277 NLCMQIVKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKT 318 (557)
Q Consensus 277 ~~v~~i~~~~~~lIi~~~~i~~~al~~L~~~~I~~v~~v~~~ 318 (557)
+++.+.+..|+++|++-..-...+.++..+.||..++.++..
T Consensus 212 emv~Ka~~aGipvivS~saPT~lAVelA~~~giTLiGf~R~~ 253 (263)
T PRK00724 212 EMVQKAAMAGIPILVAVSAPTSLAVELAEELGLTLVGFARGG 253 (263)
T ss_pred HHHHHHHHcCCcEEEEcccchHHHHHHHHHhCCEEEEEecCC
Confidence 677888999999999999999999999999999998877654
No 63
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=21.74 E-value=2.9e+02 Score=21.92 Aligned_cols=51 Identities=14% Similarity=0.162 Sum_probs=37.1
Q ss_pred HHHHHHHHcCCcEEEeCCCCCHHHHH----HHHHcCCeeEecCChhHHHHHHHHhCCc
Q 036490 277 NLCMQIVKFKPDLVITEKGLSDLACH----YLSKAGVSAIRRLRKTDNNRIAKACGAV 330 (557)
Q Consensus 277 ~~v~~i~~~~~~lIi~~~~i~~~al~----~L~~~~I~~v~~v~~~~le~Ia~~tGa~ 330 (557)
+.++.|.+-.+.+|+.+.+.++.... ++..++|.++..-.+.+ |..++|-.
T Consensus 18 ~v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Vp~~~~~s~~e---LG~a~G~~ 72 (82)
T PRK13602 18 QTVKALKRGSVKEVVVAEDADPRLTEKVEALANEKGVPVSKVDSMKK---LGKACGIE 72 (82)
T ss_pred HHHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHHcCCCEEEECCHHH---HHHHHCCC
Confidence 44566666778999999999887654 45778998876665544 67777754
No 64
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=20.82 E-value=3.6e+02 Score=27.38 Aligned_cols=54 Identities=20% Similarity=0.170 Sum_probs=38.2
Q ss_pred HHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCCeeEecCChhHHHHHHHHhCCc
Q 036490 277 NLCMQIVKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAV 330 (557)
Q Consensus 277 ~~v~~i~~~~~~lIi~~~~i~~~al~~L~~~~I~~v~~v~~~~le~Ia~~tGa~ 330 (557)
+.++.+.+.++++|.+..+.++...+.+.+.|+.++-.+..-+.-+-+.-.|+.
T Consensus 78 ~~~~~~~~~~v~~v~~~~g~p~~~i~~lk~~g~~v~~~v~s~~~a~~a~~~GaD 131 (307)
T TIGR03151 78 ELVDLVIEEKVPVVTTGAGNPGKYIPRLKENGVKVIPVVASVALAKRMEKAGAD 131 (307)
T ss_pred HHHHHHHhCCCCEEEEcCCCcHHHHHHHHHcCCEEEEEcCCHHHHHHHHHcCCC
Confidence 456677788999999888877778888998998887766554333333334543
No 65
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=20.65 E-value=3.2e+02 Score=27.98 Aligned_cols=53 Identities=17% Similarity=0.171 Sum_probs=37.8
Q ss_pred HHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCCeeEecCChhHHHHHHHHhCCc
Q 036490 277 NLCMQIVKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAV 330 (557)
Q Consensus 277 ~~v~~i~~~~~~lIi~~~~i~~~al~~L~~~~I~~v~~v~~~~le~Ia~~tGa~ 330 (557)
+.++.+.+.++++|++..+.+.. .+.|.+.||.++..+..-..-+-+.-.|+.
T Consensus 73 ~~l~vi~e~~v~~V~~~~G~P~~-~~~lk~~Gi~v~~~v~s~~~A~~a~~~GaD 125 (320)
T cd04743 73 AQLAVVRAIKPTFALIAGGRPDQ-ARALEAIGISTYLHVPSPGLLKQFLENGAR 125 (320)
T ss_pred HHHHHHHhcCCcEEEEcCCChHH-HHHHHHCCCEEEEEeCCHHHHHHHHHcCCC
Confidence 45677778899999998887766 588999999998777654333334444543
Done!