BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036497
(375 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LE2|A Chain A, Structure Of Arabidopsis Atserpin1. Native Stressed
Conforma
Length = 393
Score = 357 bits (915), Expect = 9e-99, Method: Compositional matrix adjust.
Identities = 200/381 (52%), Positives = 250/381 (65%), Gaps = 31/381 (8%)
Query: 3 DVLESISEQTDITLSLSKHIKAPTSSSS-----PLSIHVLLSMIAAGSKGPTXXXXXXXX 57
DV ESIS Q ++++L+KH+ S +S P SI+V+LS+IAAGS G T
Sbjct: 4 DVRESISLQNQVSMNLAKHVITTVSQNSNVIFSPASINVVLSIIAAGSAGATKDQILSFL 63
Query: 58 XXXXNEQQN-FASELVAIVFADGSANGGPRLSVANGVWIDQSLSFKNTFKQTVDNIYKAS 116
+Q N F+SE+V+ V ADGSANGGP+LSVANG WID+SLSFK +FKQ +++ YKA+
Sbjct: 64 KFSSTDQLNSFSSEIVSAVLADGSANGGPKLSVANGAWIDKSLSFKPSFKQLLEDSYKAA 123
Query: 117 SHQVDFQNKAVEVSREINFWAEKETNGFIKEVLPPGSVDDSSKLVFANALYFKGVWNEAF 176
S+Q DFQ+KAVEV E+N WAEKETNG I EVLP GS D +KL+FANALYFKG WNE F
Sbjct: 124 SNQADFQSKAVEVIAEVNSWAEKETNGLITEVLPEGSADSMTKLIFANALYFKGTWNEKF 183
Query: 177 DSSKTKEYDFHLLNGGSIKVPFMTSKNKQLVTAFDGFKVLVLPYKQDE------------ 224
D S T+E +FHLL+G + PFMTSK KQ V+A+DGFKVL LPY Q +
Sbjct: 184 DESLTQEGEFHLLDGNKVTAPFMTSKKKQYVSAYDGFKVLGLPYLQGQDKRQFSMYFYLP 243
Query: 225 -----LPALEKKTGSQSGFLKDHIPYEMIEVGDFRIPRFKISFGIEVSRVLKALGLVLSF 279
L L K S GFL +HIP ++V +F+IP+FK SFG + S VLK LGL F
Sbjct: 244 DANNGLSDLLDKIVSTPGFLDNHIPRRQVKVREFKIPKFKFSFGFDASNVLKGLGLTSPF 303
Query: 280 SRKGGRLTEMVDS-HVG-----VGIFQKSFIEVKEEGTEXXXXXXXVITLKS-LPRFDKI 332
S + G LTEMV+S +G IF K+ IEV EEGTE VI L+ L D+I
Sbjct: 304 SGEEG-LTEMVESPEMGKNLCVSNIFHKACIEVNEEGTEAAAASAGVIKLRGLLMEEDEI 362
Query: 333 DFVADHPFIFMIREDATGVVL 353
DFVADHPF+ ++ E+ TGVVL
Sbjct: 363 DFVADHPFLLVVTENITGVVL 383
>pdb|1ATT|A Chain A, Crystal Structure Of Cleaved Bovine Antithrombin Iii At
3.2 Angstroms Resolution
pdb|1ATT|B Chain B, Crystal Structure Of Cleaved Bovine Antithrombin Iii At
3.2 Angstroms Resolution
Length = 429
Score = 124 bits (312), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 88/290 (30%), Positives = 144/290 (49%), Gaps = 19/290 (6%)
Query: 81 ANGGPRLSVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDFQNKAVEVSREINFWAEKE 140
AN L AN ++ D+S++F T++ + +Y A +DF+ A + IN W +
Sbjct: 131 ANKSSELVSANRLFGDKSITFNETYQDISEVVYGAKLQPLDFKGNAEQSRLTINQWISNK 190
Query: 141 TNGFIKEVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTKEYDFHLLNGGSIKVPFMT 200
T G I +V+PP ++++ + LV N +YFKG+W F T++ F+ +G S V M
Sbjct: 191 TEGRITDVIPPQAINEFTVLVLVNTIYFKGLWKSKFSPENTRKELFYKADGESCSVLMMY 250
Query: 201 SKNK-QLVTAFDGFKVLVLPYKQDE------LPALEKKTGS-QSGFLKDHIPYEMIEVGD 252
++K + + +VL LP+K D+ LP LEK + D + + E+ +
Sbjct: 251 QESKFRYRRVAESTQVLELPFKGDDITMVLILPKLEKTLAKVEQELTPDMLQEWLDELTE 310
Query: 253 ----FRIPRFKISFGIEVSRVLKALGLVLSFSRKGGRLTEMV-----DSHVGVGIFQKSF 303
+PRF+I V L+ +GL FS + RL +V D +V F K+F
Sbjct: 311 TLLVVHMPRFRIEDSFSVKEQLQDMGLEDLFSPEKSRLPGIVAEGRSDLYVS-DAFHKAF 369
Query: 304 IEVKEEGTEXXXXXXXVITLKSLPRFDKIDFVADHPFIFMIREDATGVVL 353
+EV EEG+E I +SL D++ F A+ PF+ +IRE A ++
Sbjct: 370 LEVNEEGSEAAASTVISIAGRSL-NSDRVTFKANRPFLVLIREVALNTII 418
>pdb|3KCG|I Chain I, Crystal Structure Of The Antithrombin-Factor Ixa-
Pentasaccharide Complex
Length = 432
Score = 124 bits (310), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 88/294 (29%), Positives = 144/294 (48%), Gaps = 21/294 (7%)
Query: 81 ANGGPRLSVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDFQNKAVEVSREINFWAEKE 140
AN +L AN ++ D+SL+F T++ + +Y A +DF+ A + IN W +
Sbjct: 134 ANKASKLVSANRLFGDKSLTFNETYQDISELVYGAKLQPLDFKENAEQSRAAINKWVSNK 193
Query: 141 TNGFIKEVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTKEYDFHLLNGGSIKVPFMT 200
T G I +V+P ++++ + LV N +YFKG+W F T++ F+ +G S M
Sbjct: 194 TEGRITDVIPSEAINELTVLVLVNTIYFKGLWKSKFSPENTRKELFYKADGESCSASMMY 253
Query: 201 SKNK-QLVTAFDGFKVLVLPYKQDE------LPALEKKTGSQSGFLKDHIPYEMIEVGD- 252
+ K + +G +VL LP+K D+ LP EK L + E ++ +
Sbjct: 254 QEGKFRYRRVAEGTQVLELPFKGDDITMVLILPKPEKSLAKVEKELTPEVLQEWLDELEE 313
Query: 253 ----FRIPRFKISFGIEVSRVLKALGLVLSFSRKGGRLTEMV----DSHVGVGIFQKSFI 304
+PRF+I G + L+ +GLV FS + +L +V D F K+F+
Sbjct: 314 MMLVVHMPRFRIEDGFSLKEQLQDMGLVDLFSPEKSKLPGIVAEGRDDLYVSDAFHKAFL 373
Query: 305 EVKEEGTEXXXXXXXVITLKSLPRFDKIDFVADHPFIFMIREDATGVVLSLVMF 358
EV EEG+E VI +SL +++ F A+ PF+ IRE V L+ ++F
Sbjct: 374 EVNEEGSEAAASTAVVIAGRSL-NPNRVTFKANRPFLVFIRE----VPLNTIIF 422
>pdb|1TB6|I Chain I, 2.5a Crystal Structure Of The
Antithrombin-Thrombin-Heparin Ternary Complex
pdb|1T1F|A Chain A, Crystal Structure Of Native Antithrombin In Its Monomeric
Form
pdb|1T1F|B Chain B, Crystal Structure Of Native Antithrombin In Its Monomeric
Form
pdb|1T1F|C Chain C, Crystal Structure Of Native Antithrombin In Its Monomeric
Form
pdb|2BEH|I Chain I, Crystal Structure Of Antithrombin Variant
S137a/v317c/t401c With Plasma Latent Antithrombin
pdb|2B5T|I Chain I, 2.1 Angstrom Structure Of A Nonproductive Complex Between
Antithrombin, Synthetic Heparin Mimetic Sr123781 And Two
S195a Thrombin Molecules
Length = 432
Score = 124 bits (310), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 88/294 (29%), Positives = 144/294 (48%), Gaps = 21/294 (7%)
Query: 81 ANGGPRLSVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDFQNKAVEVSREINFWAEKE 140
AN +L AN ++ D+SL+F T++ + +Y A +DF+ A + IN W +
Sbjct: 134 ANKASKLVSANRLFGDKSLTFNETYQDISELVYGAKLQPLDFKENAEQSRAAINKWVSNK 193
Query: 141 TNGFIKEVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTKEYDFHLLNGGSIKVPFMT 200
T G I +V+P ++++ + LV N +YFKG+W F T++ F+ +G S M
Sbjct: 194 TEGRITDVIPSEAINELTVLVLVNTIYFKGLWKSKFSPENTRKELFYKADGESCSASMMY 253
Query: 201 SKNK-QLVTAFDGFKVLVLPYKQDE------LPALEKKTGSQSGFLKDHIPYEMIEVGD- 252
+ K + +G +VL LP+K D+ LP EK L + E ++ +
Sbjct: 254 QEGKFRYRRVAEGTQVLELPFKGDDITMVLILPKPEKSLAKVEKELTPEVLQEWLDELEE 313
Query: 253 ----FRIPRFKISFGIEVSRVLKALGLVLSFSRKGGRLTEMV----DSHVGVGIFQKSFI 304
+PRF+I G + L+ +GLV FS + +L +V D F K+F+
Sbjct: 314 MMLCVHMPRFRIEDGFSLKEQLQDMGLVDLFSPEKSKLPGIVAEGRDDLYVSDAFHKAFL 373
Query: 305 EVKEEGTEXXXXXXXVITLKSLPRFDKIDFVADHPFIFMIREDATGVVLSLVMF 358
EV EEG+E VI +SL +++ F A+ PF+ IRE V L+ ++F
Sbjct: 374 EVNEEGSEAAASTAVVIAGRSL-NPNRVCFKANRPFLVFIRE----VPLNTIIF 422
>pdb|1ATH|A Chain A, The Intact And Cleaved Human Antithrombin Iii Complex As A
Model For Serpin-Proteinase Interactions
pdb|1ANT|L Chain L, Biological Implications Of A 3 Angstroms Structure Of
Dimeric Antithrombin
pdb|1ANT|I Chain I, Biological Implications Of A 3 Angstroms Structure Of
Dimeric Antithrombin
pdb|2ANT|L Chain L, The 2.6 A Structure Of Antithrombin Indicates A
Conformational Change At The Heparin Binding Site
pdb|2ANT|I Chain I, The 2.6 A Structure Of Antithrombin Indicates A
Conformational Change At The Heparin Binding Site
pdb|1AZX|I Chain I, AntithrombinPENTASACCHARIDE COMPLEX
pdb|1AZX|L Chain L, AntithrombinPENTASACCHARIDE COMPLEX
pdb|1BR8|L Chain L, Implications For Function And Therapy Of A 2.9a Structure
Of Binary-Complexed Antithrombin
pdb|1BR8|I Chain I, Implications For Function And Therapy Of A 2.9a Structure
Of Binary-Complexed Antithrombin
pdb|1E03|L Chain L, Plasma Alpha Antithrombin-Iii And Pentasaccharide
pdb|1E03|I Chain I, Plasma Alpha Antithrombin-Iii And Pentasaccharide
pdb|1E04|L Chain L, Plasma Beta Antithrombin-Iii
pdb|1E04|I Chain I, Plasma Beta Antithrombin-Iii
pdb|1E05|L Chain L, Plasma Alpha Antithrombin-Iii
pdb|1E05|I Chain I, Plasma Alpha Antithrombin-Iii
pdb|1DZG|L Chain L, N135q-S380c-Antithrombin-Iii
pdb|1DZH|L Chain L, P14-Fluorescein-N135q-S380c-Antithrombin-Iii
pdb|1JVQ|L Chain L, Crystal Structure At 2.6a Of The Ternary Complex Between
Antithrombin, A P14-P8 Reactive Loop Peptide, And An
Exogenous Tetrapeptide
pdb|1JVQ|I Chain I, Crystal Structure At 2.6a Of The Ternary Complex Between
Antithrombin, A P14-P8 Reactive Loop Peptide, And An
Exogenous Tetrapeptide
pdb|1LK6|L Chain L, Structure Of Dimeric Antithrombin Complexed With A P14-P9
Reactive Loop Peptide And An Exogenous Tripeptide
pdb|1LK6|I Chain I, Structure Of Dimeric Antithrombin Complexed With A P14-P9
Reactive Loop Peptide And An Exogenous Tripeptide
pdb|1NQ9|I Chain I, Crystal Structure Of Antithrombin In The
Pentasaccharide-Bound Intermediate State
pdb|1NQ9|L Chain L, Crystal Structure Of Antithrombin In The
Pentasaccharide-Bound Intermediate State
pdb|1OYH|L Chain L, Crystal Structure Of P13 Alanine Variant Of Antithrombin
pdb|1SR5|A Chain A, Antithrombin-Anhydrothrombin-Heparin Ternary Complex
Structure
pdb|1R1L|L Chain L, Structure Of Dimeric Antithrombin Complexed With A P14-P9
Reactive Loop Peptide And An Exogenous Tripeptide
(Formyl-Norleucine-Lf)
pdb|1R1L|I Chain I, Structure Of Dimeric Antithrombin Complexed With A P14-P9
Reactive Loop Peptide And An Exogenous Tripeptide
(Formyl-Norleucine-Lf)
pdb|2BEH|L Chain L, Crystal Structure Of Antithrombin Variant
S137a/v317c/t401c With Plasma Latent Antithrombin
pdb|2HIJ|L Chain L, Crystal Structure Of P14 Alanine Variant Of Antithrombin
pdb|1ATH|B Chain B, The Intact And Cleaved Human Antithrombin Iii Complex As A
Model For Serpin-Proteinase Interactions
pdb|2ZNH|A Chain A, Crystal Structure Of A Domain-Swapped Serpin Dimer
pdb|2ZNH|B Chain B, Crystal Structure Of A Domain-Swapped Serpin Dimer
pdb|3EVJ|I Chain I, Intermediate Structure Of Antithrombin Bound To The
Natural Pentasaccharide
pdb|3EVJ|L Chain L, Intermediate Structure Of Antithrombin Bound To The
Natural Pentasaccharide
pdb|4EB1|L Chain L, Hyperstable In-Frame Insertion Variant Of Antithrombin
Length = 432
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 88/294 (29%), Positives = 144/294 (48%), Gaps = 21/294 (7%)
Query: 81 ANGGPRLSVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDFQNKAVEVSREINFWAEKE 140
AN +L AN ++ D+SL+F T++ + +Y A +DF+ A + IN W +
Sbjct: 134 ANKSSKLVSANRLFGDKSLTFNETYQDISELVYGAKLQPLDFKENAEQSRAAINKWVSNK 193
Query: 141 TNGFIKEVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTKEYDFHLLNGGSIKVPFMT 200
T G I +V+P ++++ + LV N +YFKG+W F T++ F+ +G S M
Sbjct: 194 TEGRITDVIPSEAINELTVLVLVNTIYFKGLWKSKFSPENTRKELFYKADGESCSASMMY 253
Query: 201 SKNK-QLVTAFDGFKVLVLPYKQDE------LPALEKKTGSQSGFLKDHIPYEMIEVGD- 252
+ K + +G +VL LP+K D+ LP EK L + E ++ +
Sbjct: 254 QEGKFRYRRVAEGTQVLELPFKGDDITMVLILPKPEKSLAKVEKELTPEVLQEWLDELEE 313
Query: 253 ----FRIPRFKISFGIEVSRVLKALGLVLSFSRKGGRLTEMV----DSHVGVGIFQKSFI 304
+PRF+I G + L+ +GLV FS + +L +V D F K+F+
Sbjct: 314 MMLVVHMPRFRIEDGFSLKEQLQDMGLVDLFSPEKSKLPGIVAEGRDDLYVSDAFHKAFL 373
Query: 305 EVKEEGTEXXXXXXXVITLKSLPRFDKIDFVADHPFIFMIREDATGVVLSLVMF 358
EV EEG+E VI +SL +++ F A+ PF+ IRE V L+ ++F
Sbjct: 374 EVNEEGSEAAASTAVVIAGRSL-NPNRVTFKANRPFLVFIRE----VPLNTIIF 422
>pdb|2B4X|L Chain L, Crystal Structure Of Antithrombin-Iii
Length = 427
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 88/294 (29%), Positives = 144/294 (48%), Gaps = 21/294 (7%)
Query: 81 ANGGPRLSVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDFQNKAVEVSREINFWAEKE 140
AN +L AN ++ D+SL+F T++ + +Y A +DF+ A + IN W +
Sbjct: 130 ANKSSKLVSANRLFGDKSLTFNETYQDISELVYGAKLQPLDFKENAEQSRAAINKWVSNK 189
Query: 141 TNGFIKEVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTKEYDFHLLNGGSIKVPFMT 200
T G I +V+P ++++ + LV N +YFKG+W F T++ F+ +G S M
Sbjct: 190 TEGRITDVIPSEAINELTVLVLVNTIYFKGLWKSKFSPENTRKELFYKADGESCSASMMY 249
Query: 201 SKNK-QLVTAFDGFKVLVLPYKQDE------LPALEKKTGSQSGFLKDHIPYEMIEVGD- 252
+ K + +G +VL LP+K D+ LP EK L + E ++ +
Sbjct: 250 QEGKFRYRRVAEGTQVLELPFKGDDITMVLILPKPEKSLAKVEKELTPEVLQEWLDELEE 309
Query: 253 ----FRIPRFKISFGIEVSRVLKALGLVLSFSRKGGRLTEMV----DSHVGVGIFQKSFI 304
+PRF+I G + L+ +GLV FS + +L +V D F K+F+
Sbjct: 310 MMLVVHMPRFRIEDGFSLKEQLQDMGLVDLFSPEKSKLPGIVAEGRDDLYVSDAFHKAFL 369
Query: 305 EVKEEGTEXXXXXXXVITLKSLPRFDKIDFVADHPFIFMIREDATGVVLSLVMF 358
EV EEG+E VI +SL +++ F A+ PF+ IRE V L+ ++F
Sbjct: 370 EVNEEGSEAAASTAVVIAGRSL-NPNRVTFKANRPFLVFIRE----VPLNTIIF 418
>pdb|2GD4|I Chain I, Crystal Structure Of The Antithrombin-S195a Factor
Xa-Pentasaccharide Complex
pdb|2GD4|C Chain C, Crystal Structure Of The Antithrombin-S195a Factor
Xa-Pentasaccharide Complex
Length = 443
Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 88/294 (29%), Positives = 142/294 (48%), Gaps = 21/294 (7%)
Query: 81 ANGGPRLSVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDFQNKAVEVSREINFWAEKE 140
AN +L AN ++ D+SL+F T++ + +Y A +DF+ A + IN W +
Sbjct: 145 ANKASKLVSANRLFGDKSLTFNETYQDISELVYGAKLQPLDFKENAEQSRAAINKWVSNK 204
Query: 141 TNGFIKEVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTKEYDFHLLNGGSIKVPFMT 200
T G I +V+P ++++ + LV N +YFKG+W F T++ F+ +G S M
Sbjct: 205 TEGRITDVIPSEAINELTVLVLVNTIYFKGLWKSKFSPENTRKELFYKADGESCSASMMY 264
Query: 201 SKNK-QLVTAFDGFKVLVLPYKQDE------LPALEKKTGSQSGFLKDHIPYEMIEVGD- 252
+ K + +G +VL LP+K D+ LP EK L + E ++ +
Sbjct: 265 QEGKFRYRRVAEGTQVLELPFKGDDITMVLILPKPEKSLAKVEKELTPEVLQEWLDELEE 324
Query: 253 ----FRIPRFKISFGIEVSRVLKALGLVLSFSRKGGRLTEMV----DSHVGVGIFQKSFI 304
+PRF+I G + L+ +GLV FS L +V D F K+F+
Sbjct: 325 MMLVVHMPRFRIEDGFSLKEQLQDMGLVDLFSPAASALPGIVAEGRDDLYVSDAFHKAFL 384
Query: 305 EVKEEGTEXXXXXXXVITLKSLPRFDKIDFVADHPFIFMIREDATGVVLSLVMF 358
EV EEG+E VI +SL +++ F A+ PF+ IRE V L+ ++F
Sbjct: 385 EVNEEGSEAAASTAVVIAGRSL-NPNRVTFKANRPFLVFIRE----VPLNTIIF 433
>pdb|1DZG|I Chain I, N135q-S380c-Antithrombin-Iii
Length = 432
Score = 121 bits (303), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 87/294 (29%), Positives = 142/294 (48%), Gaps = 21/294 (7%)
Query: 81 ANGGPRLSVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDFQNKAVEVSREINFWAEKE 140
A +L AN ++ D+SL+F T++ + +Y A +DF+ A + IN W +
Sbjct: 134 AQKSSKLVSANRLFGDKSLTFNETYQDISELVYGAKLQPLDFKENAEQSRAAINKWVSNK 193
Query: 141 TNGFIKEVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTKEYDFHLLNGGSIKVPFMT 200
T G I +V+P ++++ + LV N +YFKG+W F T++ F+ +G S M
Sbjct: 194 TEGRITDVIPSEAINELTVLVLVNTIYFKGLWKSKFSPENTRKELFYKADGESCSASMMY 253
Query: 201 SKNK-QLVTAFDGFKVLVLPYKQDE------LPALEKKTGSQSGFLKDHIPYEMIEVGD- 252
+ K + +G +VL LP+K D+ LP EK L + E ++ +
Sbjct: 254 QEGKFRYRRVAEGTQVLELPFKGDDITMVLILPKPEKSLAKVEKELTPEVLQEWLDELEE 313
Query: 253 ----FRIPRFKISFGIEVSRVLKALGLVLSFSRKGGRLTEMV----DSHVGVGIFQKSFI 304
+PRF+I G + L+ +GLV FS + +L +V D F K+F+
Sbjct: 314 MMLVVHMPRFRIEDGFSLKEQLQDMGLVDLFSPEKSKLPGIVAEGRDDLYVSDAFHKAFL 373
Query: 305 EVKEEGTEXXXXXXXVITLKSLPRFDKIDFVADHPFIFMIREDATGVVLSLVMF 358
EV EEG E VI +SL +++ F A+ PF+ IRE V L+ ++F
Sbjct: 374 EVNEEGCEAAASTAVVIAGRSL-NPNRVTFKANRPFLVFIRE----VPLNTIIF 422
>pdb|1BY7|A Chain A, Human Plasminogen Activator Inhibitor-2. Loop (66-98)
Deletion Mutant
pdb|1JRR|A Chain A, Human Plasminogen Activator Inhibitor-2.[loop (66-98)
Deletionmutant] Complexed With Peptide Mimicking The
Reactive Center Loop
Length = 382
Score = 120 bits (302), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 102/377 (27%), Positives = 168/377 (44%), Gaps = 34/377 (9%)
Query: 12 TDITLSLSKHIK--APTSSS--SPLSIHVLLSMIAAGSKGPTXXXXXXXXXXXXNE---- 63
T L+L KH+ +PT + SP SI ++M+ GS+G T NE
Sbjct: 9 TLFALNLFKHLAKASPTQNLFLSPWSISSTMAMVYMGSRGSTEDQMAKVLQF--NEVGAA 66
Query: 64 QQNFASELVAIVFADGSANGGPRLSVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDFQ 123
S ++ A ++ G L N ++ ++S SF+ + + Y + VDF
Sbjct: 67 ADKIHSSFRSLSSAINASTGNYLLESVNKLFGEKSASFREEYIRLCQKYYSSEPQAVDFL 126
Query: 124 NKAVEVSREINFWAEKETNGFIKEVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTKE 183
A E ++IN W + +T G I +LP GSVD +++V NA+YFKG W F+
Sbjct: 127 ECAEEARKKINSWVKTQTKGKIPNLLPEGSVDGDTRMVLVNAVYFKGKWKTPFEKKLNGL 186
Query: 184 YDFHLLNGGSIKVPFMTSKNKQLVTAFDGFK--VLVLPYKQDE-----LPALEKKTGSQS 236
Y F + + V M + K + + K +L LPY D LP +
Sbjct: 187 YPFRVNSAQRTPVQMMYLREKLNIGYIEDLKAQILELPYAGDVSMFLLLPDEIADVSTGL 246
Query: 237 GFLKDHIPYEMI------------EVGDFRIPRFKISFGIEVSRVLKALGLVLSFSRKGG 284
L+ I Y+ + EV + IP+FK+ E+ +L+++G+ +F++
Sbjct: 247 ELLESEITYDKLNKWTSKDKMAEDEV-EVYIPQFKLEEHYELRSILRSMGMEDAFNKGRA 305
Query: 285 RLTEMVDSH--VGVGIFQKSFIEVKEEGTEXXXXXXXVITLKSLPRFDKIDFVADHPFIF 342
+ M + + +F ++ ++V EEGTE V+T ++ FVADHPF+F
Sbjct: 306 NFSGMSERNDLFLSEVFHQAMVDVNEEGTEAAAGTGGVMTGRT--GHGGPQFVADHPFLF 363
Query: 343 MIREDATGVVLSLVMFS 359
+I T +L FS
Sbjct: 364 LIMHKITNCILFFGRFS 380
>pdb|1DZH|I Chain I, P14-Fluorescein-N135q-S380c-Antithrombin-Iii
Length = 432
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 87/294 (29%), Positives = 142/294 (48%), Gaps = 21/294 (7%)
Query: 81 ANGGPRLSVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDFQNKAVEVSREINFWAEKE 140
A +L AN ++ D+SL+F T++ + +Y A +DF+ A + IN W +
Sbjct: 134 AQKSSKLVSANRLFGDKSLTFNETYQDISELVYGAKLQPLDFKENAEQSRAAINKWVSNK 193
Query: 141 TNGFIKEVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTKEYDFHLLNGGSIKVPFMT 200
T G I +V+P ++++ + LV N +YFKG+W F T++ F+ +G S M
Sbjct: 194 TEGRITDVIPSEAINELTVLVLVNTIYFKGLWKSKFSPENTRKELFYKADGESCSASMMY 253
Query: 201 SKNK-QLVTAFDGFKVLVLPYKQDE------LPALEKKTGSQSGFLKDHIPYEMIEVGD- 252
+ K + +G +VL LP+K D+ LP EK L + E ++ +
Sbjct: 254 QEGKFRYRRVAEGTQVLELPFKGDDITMVLILPKPEKSLAKVEKELTPEVLQEWLDELEE 313
Query: 253 ----FRIPRFKISFGIEVSRVLKALGLVLSFSRKGGRLTEMV----DSHVGVGIFQKSFI 304
+PRF+I G + L+ +GLV FS + +L +V D F K+F+
Sbjct: 314 MMLVVHMPRFRIEDGFSLKEQLQDMGLVDLFSPEKSKLPGIVAEGRDDLYVSDAFHKAFL 373
Query: 305 EVKEEGTEXXXXXXXVITLKSLPRFDKIDFVADHPFIFMIREDATGVVLSLVMF 358
EV EEG E VI +SL +++ F A+ PF+ IRE V L+ ++F
Sbjct: 374 EVNEEGXEAAASTAVVIAGRSL-NPNRVTFKANRPFLVFIRE----VPLNTIIF 422
>pdb|2HIJ|I Chain I, Crystal Structure Of P14 Alanine Variant Of Antithrombin
Length = 432
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 86/289 (29%), Positives = 141/289 (48%), Gaps = 21/289 (7%)
Query: 86 RLSVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDFQNKAVEVSREINFWAEKETNGFI 145
+L AN ++ D+SL+F T++ + +Y A +DF+ A + IN W +T G I
Sbjct: 139 KLVSANRLFGDKSLTFNETYQDISELVYGAKLQPLDFKENAEQSRAAINKWVSNKTEGRI 198
Query: 146 KEVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTKEYDFHLLNGGSIKVPFMTSKNK- 204
+V+P ++++ + LV N +YFKG+W F T++ F+ +G S M + K
Sbjct: 199 TDVIPSEAINELTVLVLVNTIYFKGLWKSKFSPENTRKELFYKADGESCSASMMYQEGKF 258
Query: 205 QLVTAFDGFKVLVLPYKQDE------LPALEKKTGSQSGFLKDHIPYEMIEVGD-----F 253
+ +G +VL LP+K D+ LP EK L + E ++ +
Sbjct: 259 RYRRVAEGTQVLELPFKGDDITMVLILPKPEKSLAKVEKELTPEVLQEWLDELEEMMLVV 318
Query: 254 RIPRFKISFGIEVSRVLKALGLVLSFSRKGGRLTEMV----DSHVGVGIFQKSFIEVKEE 309
+PRF+I G + L+ +GLV FS + +L +V D F K+F+EV EE
Sbjct: 319 HMPRFRIEDGFSLKEQLQDMGLVDLFSPEKSKLPGIVAEGRDDLYVSDAFHKAFLEVNEE 378
Query: 310 GTEXXXXXXXVITLKSLPRFDKIDFVADHPFIFMIREDATGVVLSLVMF 358
G E VI +SL +++ F A+ PF+ IRE V L+ ++F
Sbjct: 379 GAEAAASTAVVIAGRSL-NPNRVTFKANRPFLVFIRE----VPLNTIIF 422
>pdb|2ARQ|A Chain A, Human Plasminogen Activator Inhibitor-2.[loop (66-98)
Deletion Mutant] Complexed With Peptide
N-Acetyl-Teaaagdggvmtgr-Oh
pdb|2ARR|A Chain A, Human Plasminogen Activator Inhibitor-2.[loop (66-98)
Deletion Mutant] Complexed With Peptide
N-acetyl-teaaagmggvmtgr-oh
Length = 382
Score = 119 bits (297), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 101/377 (26%), Positives = 168/377 (44%), Gaps = 34/377 (9%)
Query: 12 TDITLSLSKHIK--APTSSS--SPLSIHVLLSMIAAGSKGPTXXXXXXXXXXXXNE---- 63
T L+L KH+ +PT + SP SI ++M+ GS+G T NE
Sbjct: 9 TLFALNLFKHLAKASPTQNLFLSPWSISSTMAMVYMGSRGSTEDQMASVLQF--NEVGAA 66
Query: 64 QQNFASELVAIVFADGSANGGPRLSVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDFQ 123
S ++ A ++ G L N ++ ++S SF+ + + Y + VDF
Sbjct: 67 ADKIHSSFRSLSSAINASTGNYLLESVNKLFGEKSASFREEYIRLCQKYYSSEPQAVDFL 126
Query: 124 NKAVEVSREINFWAEKETNGFIKEVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTKE 183
A E ++IN W + +T G I +LP GSVD +++V NA+YFKG W F+
Sbjct: 127 ECAEEARKKINSWVKTQTKGKIPNLLPEGSVDGDTRMVLVNAVYFKGKWKTPFEKKLNGL 186
Query: 184 YDFHLLNGGSIKVPFMTSKNKQLVTAFDGFK--VLVLPYKQDE-----LPALEKKTGSQS 236
+ F + + V M + K + + K +L LPY D LP +
Sbjct: 187 FPFRVNSAQRTPVQMMYLREKLNIGYIEDLKAQILELPYAGDVSMFLLLPDEIADVSTGL 246
Query: 237 GFLKDHIPYEMI------------EVGDFRIPRFKISFGIEVSRVLKALGLVLSFSRKGG 284
L+ I Y+ + EV + IP+FK+ E+ +L+++G+ +F++
Sbjct: 247 ELLESEITYDKLNKWTSKDKMAEDEV-EVYIPQFKLEEHYELRSILRSMGMEDAFNKGRA 305
Query: 285 RLTEMVDSH--VGVGIFQKSFIEVKEEGTEXXXXXXXVITLKSLPRFDKIDFVADHPFIF 342
+ M + + +F ++ ++V EEGTE V+T ++ FVADHPF+F
Sbjct: 306 NFSGMSERNDLFLSEVFHQAMVDVNEEGTEAAAGTGGVMTGRT--GHGGPQFVADHPFLF 363
Query: 343 MIREDATGVVLSLVMFS 359
+I T +L FS
Sbjct: 364 LIMHKITNCILFFGRFS 380
>pdb|4EB1|I Chain I, Hyperstable In-Frame Insertion Variant Of Antithrombin
Length = 440
Score = 118 bits (295), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 89/302 (29%), Positives = 144/302 (47%), Gaps = 29/302 (9%)
Query: 81 ANGGPRLSVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDFQNKAVEVSREINFWAEKE 140
AN +L AN ++ D+SL+F T++ + +Y A +DF+ A + IN W +
Sbjct: 134 ANKASKLVSANRLFGDKSLTFNETYQDISELVYGAKLQPLDFKENAEQSRAAINKWVSNK 193
Query: 141 TNGFIKEVLPPGSVD--------DSSKLVFANALYFKGVWNEAFDSSKTKEYDFHLLNGG 192
T G I +V+P +++ S+ LV N +YFKG+W F T++ F+ +G
Sbjct: 194 TEGRITDVIPSEAINVLVLVNTRTSTVLVLVNTIYFKGLWKSKFSPENTRKELFYKADGE 253
Query: 193 SIKVPFMTSKNK-QLVTAFDGFKVLVLPYKQDE------LPALEKKTGSQSGFLKDHIPY 245
S M + K + +G +VL LP+K D+ LP EK L +
Sbjct: 254 SCSASMMYQEGKFRYRRVAEGTQVLELPFKGDDITMVLILPKPEKSLAKVEKELTPEVLQ 313
Query: 246 EMIEVGD-----FRIPRFKISFGIEVSRVLKALGLVLSFSRKGGRLTEMV----DSHVGV 296
E ++ + +PRF+I G + L+ +GLV FS + +L +V D
Sbjct: 314 EWLDELEEMMLVVHMPRFRIEDGFSLKEQLQDMGLVDLFSPEKSKLPGIVAEGRDDLYVS 373
Query: 297 GIFQKSFIEVKEEGTEXXXXXXXVITLKSLPRFDKIDFVADHPFIFMIREDATGVVLSLV 356
F K+F+EV EEG+E VI +SL +++ F A+ PF+ IRE V L+ +
Sbjct: 374 DAFHKAFLEVNEEGSEAAASTAVVIAGRSL-NPNRVTFKANRPFLVFIRE----VPLNTI 428
Query: 357 MF 358
+F
Sbjct: 429 IF 430
>pdb|3F5N|A Chain A, Structure Of Native Human Neuroserpin
pdb|3F5N|B Chain B, Structure Of Native Human Neuroserpin
pdb|3F5N|C Chain C, Structure Of Native Human Neuroserpin
pdb|3F5N|D Chain D, Structure Of Native Human Neuroserpin
pdb|3F5N|E Chain E, Structure Of Native Human Neuroserpin
Length = 407
Score = 117 bits (293), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 98/376 (26%), Positives = 169/376 (44%), Gaps = 47/376 (12%)
Query: 12 TDITLSLSKHIKAPTSSS----SPLSIHVLLSMIAAGSKGPTXXXXXXXX---XXXXNEQ 64
D+++++ ++A SPLSI + + M+ G++G T E+
Sbjct: 24 ADLSVNMYNRLRATGEDENILFSPLSIALAMGMMELGAQGSTQKEIRHSMGYDSLKNGEE 83
Query: 65 QNFASELVAIVFADGSANGGPRLSVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDFQN 124
+F E +V A S + +AN +++ F Q + + A+ + VDF +
Sbjct: 84 FSFLKEFSNMVTAKESQY---VMKIANSLFVQNGFHVNEEFLQMMKKYFNAAVNHVDF-S 139
Query: 125 KAVEVSREINFWAEKETNGFIKEVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTKEY 184
+ V V+ IN W E TN +K+++ P D ++ L NA+YFKG W F T+ +
Sbjct: 140 QNVAVANYINKWVENNTNNLVKDLVSPRDFDAATYLALINAVYFKGNWKSQFRPENTRTF 199
Query: 185 DFHLLNGGSIKVPFMTSKNKQLVTAF-DG-------FKVLVLPYKQDELPAL------EK 230
F + +++P M + + F DG ++VL +PY+ DE+ + E
Sbjct: 200 SFTKDDESEVQIPMMYQQGEFYYGEFSDGSNEAGGIYQVLEIPYEGDEISMMLVLSRQEV 259
Query: 231 KTGSQSGFLK--------DHIPYEMIEVGDFRIPRFKISFGIEVSRVLKALGLVLSFSRK 282
+ +K + + + +EV +PRF + I++ VLKALG+ F K
Sbjct: 260 PLATLEPLVKAQLVEEWANSVKKQKVEV---YLPRFTVEQEIDLKDVLKALGITEIFI-K 315
Query: 283 GGRLTEMVDSHVGVGIF-----QKSFIEVKEEGTEXXXXXXXVITLKSLPRFDKIDFVAD 337
LT + D+ IF KSF+EV EEG+E + + + ++ + D
Sbjct: 316 DANLTGLSDNK---EIFLSKAIHKSFLEVNEEGSEAAAVSGMIAISRMAVLYPQV--IVD 370
Query: 338 HPFIFMIREDATGVVL 353
HPF F+IR TG +L
Sbjct: 371 HPFFFLIRNRRTGTIL 386
>pdb|3FGQ|A Chain A, Crystal Structure Of Native Human Neuroserpin
pdb|3FGQ|B Chain B, Crystal Structure Of Native Human Neuroserpin
Length = 397
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 98/376 (26%), Positives = 169/376 (44%), Gaps = 47/376 (12%)
Query: 12 TDITLSLSKHIKAPTSSS----SPLSIHVLLSMIAAGSKGPTXXXXXXXX---XXXXNEQ 64
D+++++ ++A SPLSI + + M+ G++G T E+
Sbjct: 24 ADLSVNMYNRLRATGEDENILFSPLSIALAMGMMELGAQGSTQKEIRHSMGYDSLKNGEE 83
Query: 65 QNFASELVAIVFADGSANGGPRLSVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDFQN 124
+F E +V A S + +AN +++ F Q + + A+ + VDF +
Sbjct: 84 FSFLKEFSNMVTAKESQY---VMKIANSLFVQNGFHVNEEFLQMMKKYFNAAVNHVDF-S 139
Query: 125 KAVEVSREINFWAEKETNGFIKEVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTKEY 184
+ V V+ IN W E TN +K+++ P D ++ L NA+YFKG W F T+ +
Sbjct: 140 QNVAVANYINKWVENNTNNLVKDLVSPRDFDAATYLALINAVYFKGNWKSQFRPENTRTF 199
Query: 185 DFHLLNGGSIKVPFMTSKNKQLVTAF-DG-------FKVLVLPYKQDELPAL------EK 230
F + +++P M + + F DG ++VL +PY+ DE+ + E
Sbjct: 200 SFTKDDESEVQIPMMYQQGEFYYGEFSDGSNEAGGIYQVLEIPYEGDEISMMLVLSRQEV 259
Query: 231 KTGSQSGFLK--------DHIPYEMIEVGDFRIPRFKISFGIEVSRVLKALGLVLSFSRK 282
+ +K + + + +EV +PRF + I++ VLKALG+ F K
Sbjct: 260 PLATLEPLVKAQLVEEWANSVKKQKVEV---YLPRFTVEQEIDLKDVLKALGITEIFI-K 315
Query: 283 GGRLTEMVDSHVGVGIF-----QKSFIEVKEEGTEXXXXXXXVITLKSLPRFDKIDFVAD 337
LT + D+ IF KSF+EV EEG+E + + + ++ + D
Sbjct: 316 DANLTGLSDNK---EIFLSKAIHKSFLEVNEEGSEAAAVSGMIAISRMAVLYPQV--IVD 370
Query: 338 HPFIFMIREDATGVVL 353
HPF F+IR TG +L
Sbjct: 371 HPFFFLIRNRRTGTIL 386
>pdb|2B4X|I Chain I, Crystal Structure Of Antithrombin-Iii
Length = 427
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 85/289 (29%), Positives = 141/289 (48%), Gaps = 21/289 (7%)
Query: 86 RLSVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDFQNKAVEVSREINFWAEKETNGFI 145
+L AN ++ D+SL+F T++ + +Y A +DF+ A + IN W +T G I
Sbjct: 135 KLVSANRLFGDKSLTFNETYQDISELVYGAKLQPLDFKENAEQSRAAINKWVSNKTEGRI 194
Query: 146 KEVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTKEYDFHLLNGGSIKVPFMTSKNK- 204
+V+P ++++ + LV N + FKG+W F T++ F+ +G S M + K
Sbjct: 195 TDVIPSEAINELTVLVLVNTILFKGLWKSKFSPENTRKELFYKADGESCSASMMYQEGKF 254
Query: 205 QLVTAFDGFKVLVLPYKQDE------LPALEKKTGSQSGFLKDHIPYEMIEVGD-----F 253
+ +G +VL LP+K D+ LP EK L + E ++ +
Sbjct: 255 RYRRVAEGTQVLELPFKGDDITMVLILPKPEKSLAKVEKELTPEVLQEWLDELEEMMLVV 314
Query: 254 RIPRFKISFGIEVSRVLKALGLVLSFSRKGGRLTEMV----DSHVGVGIFQKSFIEVKEE 309
+PRF+I G + L+ +GLV FS + +L +V D F K+F+EV EE
Sbjct: 315 HMPRFRIEDGFSLKEQLQDMGLVDLFSPEKSKLPGIVAEGRDDLYVSDAFHKAFLEVNEE 374
Query: 310 GTEXXXXXXXVITLKSLPRFDKIDFVADHPFIFMIREDATGVVLSLVMF 358
G+E VI +SL +++ F A+ PF+ IRE V L+ ++F
Sbjct: 375 GSEAAASTAVVIAGRSL-NPNRVTFKANRPFLVFIRE----VPLNTIIF 418
>pdb|1OYH|I Chain I, Crystal Structure Of P13 Alanine Variant Of Antithrombin
Length = 432
Score = 115 bits (288), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 98/351 (27%), Positives = 160/351 (45%), Gaps = 29/351 (8%)
Query: 30 SPLSIHVLLSMIAAGSKGPTXXXXXXXXXXXXNEQQNFASELVAIVFAD------GSANG 83
SPLSI +M G+ T ++ S+ + FA AN
Sbjct: 79 SPLSISTAFAMTKLGACNDTLQQLMEVFKFDTISEK--TSDQIHFFFAKLNCRLYRKANK 136
Query: 84 GPRLSVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDFQNKAVEVSREINFWAEKETNG 143
+L AN ++ D+SL+F T++ + +Y A +DF+ A + IN W +T G
Sbjct: 137 ASKLVSANRLFGDKSLTFNETYQDISELVYGAKLQPLDFKENAEQSRAAINKWVSNKTEG 196
Query: 144 FIKEVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTKEYDFHLLNGGSIKVPFMTSKN 203
I +V+P ++++ + LV N +YFKG+W F T++ F+ +G S M +
Sbjct: 197 RITDVIPSEAINELTVLVLVNTIYFKGLWKSKFSPENTRKELFYKADGESCSASMMYQEG 256
Query: 204 K-QLVTAFDGFKVLVLPYKQDE------LPALEKKTGSQSGFLKDHIPYEMIEVGD---- 252
K + +G +VL LP+K D+ LP EK L + E ++ +
Sbjct: 257 KFRYRRVAEGTQVLELPFKGDDITMVLILPKPEKSLAKVEKELTPEVLQEWLDELEEMML 316
Query: 253 -FRIPRFKISFGIEVSRVLKALGLVLSFSRKGGRLTEMV----DSHVGVGIFQKSFIEVK 307
+PRF+I G + L+ +GLV FS + +L +V D F K+F+EV
Sbjct: 317 VVHMPRFRIEDGFSLKEQLQDMGLVDLFSPEKSKLPGIVAEGRDDLYVSDAFHKAFLEVN 376
Query: 308 EEGTEXXXXXXXVITLKSLPRFDKIDFVADHPFIFMIREDATGVVLSLVMF 358
EEG+ VI +SL +++ F A+ PF+ IRE V L+ ++F
Sbjct: 377 EEGSAAAASTAVVIAGRSL-NPNRVTFKANRPFLVFIRE----VPLNTIIF 422
>pdb|3CVM|A Chain A, High Resolution Structure Of A Stable Plasminogen
Activator Inhibitor Type-1 In Its Protease Cleaved Form
pdb|3CVM|B Chain B, High Resolution Structure Of A Stable Plasminogen
Activator Inhibitor Type-1 In Its Protease Cleaved Form
Length = 392
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/288 (29%), Positives = 130/288 (45%), Gaps = 28/288 (9%)
Query: 87 LSVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDFQNKAVEVSR-EINFWAEKETNGFI 145
+S + +++ + L F +++++ QVDF VE +R IN W + T G I
Sbjct: 104 ISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQVDFSE--VERARFIINDWVKTHTKGMI 161
Query: 146 KEVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTKEYDFHLLNGGSIKVPFMTSKNKQ 205
+L G+VD ++LV NALYF G W F S T FH +G ++ VP M NK
Sbjct: 162 SHLLGTGAVDQLTRLVLVNALYFNGQWKTPFPDSSTHRRLFHKSDGSTVSVPMMAQTNKF 221
Query: 206 LVTAF---DG--FKVLVLPYKQDELP-----------ALEKKTGSQSGFLKDHIPYEMIE 249
T F DG + +L LPY D L L T S L H M
Sbjct: 222 NYTEFTTPDGHYYDILELPYHGDTLSMFIAAPYEKEVPLSALTNILSAQLISHWKGNMTR 281
Query: 250 VGDFRI-PRFKISFGIEVSRVLKALGLVLSFSRKGGRLTEMVDS---HVGVGIFQKSFIE 305
+ + P+F + +++ + L+ LG+ F + T + D HV + + QK IE
Sbjct: 282 LPRLLVLPKFSLETEVDLRKPLENLGMTDMFRQFQADFTSLSDQEPLHVALAL-QKVKIE 340
Query: 306 VKEEGTEXXXXXXXVITLKSLPRFDKIDFVADHPFIFMIREDATGVVL 353
V E GT +++ + P + + D PF+F++R + TG VL
Sbjct: 341 VNESGTVASSSTAVIVSARMAPE----EIIIDRPFLFVVRHNPTGTVL 384
>pdb|3UT3|A Chain A, A Novel Pai-i Inhibitor And Its Structural Mechanism
pdb|3UT3|B Chain B, A Novel Pai-i Inhibitor And Its Structural Mechanism
pdb|3UT3|C Chain C, A Novel Pai-i Inhibitor And Its Structural Mechanism
pdb|3UT3|D Chain D, A Novel Pai-i Inhibitor And Its Structural Mechanism
Length = 375
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/288 (29%), Positives = 130/288 (45%), Gaps = 28/288 (9%)
Query: 87 LSVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDFQNKAVEVSR-EINFWAEKETNGFI 145
+S + +++ + L F +++++ QVDF VE +R IN W + T G I
Sbjct: 87 ISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQVDFSE--VERARFIINDWVKTHTKGMI 144
Query: 146 KEVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTKEYDFHLLNGGSIKVPFMTSKNKQ 205
+L G+VD ++LV NALYF G W F S T FH +G ++ VP M NK
Sbjct: 145 SHLLGTGAVDQLTRLVLVNALYFNGQWKTPFPDSSTHRRLFHKSDGSTVSVPMMAQTNKF 204
Query: 206 LVTAF---DG--FKVLVLPYKQDELP-----------ALEKKTGSQSGFLKDHIPYEMIE 249
T F DG + +L LPY D L L T S L H M
Sbjct: 205 NYTEFTTPDGHYYDILELPYHGDTLSMFIAAPYEKEVPLSALTNILSAQLISHWKGNMTR 264
Query: 250 VGDFRI-PRFKISFGIEVSRVLKALGLVLSFSRKGGRLTEMVDS---HVGVGIFQKSFIE 305
+ + P+F + +++ + L+ LG+ F + T + D HV + + QK IE
Sbjct: 265 LPRLLVLPKFSLETEVDLRKPLENLGMTDMFRQFQADFTSLSDQEPLHVALAL-QKVKIE 323
Query: 306 VKEEGTEXXXXXXXVITLKSLPRFDKIDFVADHPFIFMIREDATGVVL 353
V E GT +++ + P + + D PF+F++R + TG VL
Sbjct: 324 VNESGTVASSSTAVIVSARMAPE----EIIIDRPFLFVVRHNPTGTVL 367
>pdb|1B3K|A Chain A, Plasminogen Activator Inhibitor-1
pdb|1B3K|B Chain B, Plasminogen Activator Inhibitor-1
pdb|1B3K|C Chain C, Plasminogen Activator Inhibitor-1
pdb|1B3K|D Chain D, Plasminogen Activator Inhibitor-1
pdb|1OC0|A Chain A, Plasminogen Activator Inhibitor-1 Complex With Somatomedin
B Domain Of Vitronectin
Length = 379
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/288 (29%), Positives = 130/288 (45%), Gaps = 28/288 (9%)
Query: 87 LSVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDFQNKAVEVSR-EINFWAEKETNGFI 145
+S + +++ + L F +++++ QVDF VE +R IN W + T G I
Sbjct: 91 ISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQVDFSE--VERARFIINDWVKTHTKGMI 148
Query: 146 KEVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTKEYDFHLLNGGSIKVPFMTSKNKQ 205
+L G+VD ++LV NALYF G W F S T FH +G ++ VP M NK
Sbjct: 149 SHLLGTGAVDQLTRLVLVNALYFNGQWKTPFPDSSTHRRLFHKSDGSTVSVPMMAQTNKF 208
Query: 206 LVTAF---DG--FKVLVLPYKQDELP-----------ALEKKTGSQSGFLKDHIPYEMIE 249
T F DG + +L LPY D L L T S L H M
Sbjct: 209 NYTEFTTPDGHYYDILELPYHGDTLSMFIAAPYEKEVPLSALTNILSAQLISHWKGNMTR 268
Query: 250 VGDFRI-PRFKISFGIEVSRVLKALGLVLSFSRKGGRLTEMVDS---HVGVGIFQKSFIE 305
+ + P+F + +++ + L+ LG+ F + T + D HV + + QK IE
Sbjct: 269 LPRLLVLPKFSLETEVDLRKPLENLGMTDMFRQFQADFTSLSDQEPLHVALAL-QKVKIE 327
Query: 306 VKEEGTEXXXXXXXVITLKSLPRFDKIDFVADHPFIFMIREDATGVVL 353
V E GT +++ + P + + D PF+F++R + TG VL
Sbjct: 328 VNESGTVASSSTAVIVSARMAPE----EIIIDRPFLFVVRHNPTGTVL 371
>pdb|2DUT|A Chain A, Crystal Structure Of A M-Loop Deletion Variant Of Ment In
The Native Conformation
pdb|2DUT|B Chain B, Crystal Structure Of A M-Loop Deletion Variant Of Ment In
The Native Conformation
pdb|2DUT|C Chain C, Crystal Structure Of A M-Loop Deletion Variant Of Ment In
The Native Conformation
pdb|2DUT|D Chain D, Crystal Structure Of A M-Loop Deletion Variant Of Ment In
The Native Conformation
Length = 423
Score = 112 bits (279), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 88/347 (25%), Positives = 151/347 (43%), Gaps = 28/347 (8%)
Query: 30 SPLSIHVLLSMIAAGSKGPTXXXXXXXXXXXXNEQQNFASELVAIVFADGSANGGPRLSV 89
SP SI L++ +KG T + +N S ++ A L
Sbjct: 72 SPWSISSALALTYLAAKGSTAREMAEVLHF--EQAENIHSGFKELLTAFNKPRNNYSLRS 129
Query: 90 ANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDFQNKAVEVSREINFWAEKETNGFIKEVL 149
AN ++++++ + T+ Q YKA +V+F+ + +EIN W EK+T IK +L
Sbjct: 130 ANRIYVEKTYALLPTYLQLSKKYYKAEPQKVNFKTAPEQSRKEINTWVEKQTESKIKNLL 189
Query: 150 PPGSVDDSSKLVFANALYFKGVWNEAFDSSKTKEYDFHLLNGGS--IKVPFMTSKNKQLV 207
V +++L+ NA+YFK W F + KT F L S +K+ +M L+
Sbjct: 190 SSDDVKATTRLILVNAIYFKAEWEVKFQAEKTSIQPFRLSKNKSKPVKMMYMRDTFPVLI 249
Query: 208 TAFDGFKVLVLPYKQDELPAL--------EKKTGSQSGFLKDHIPYEMIE---------- 249
FK++ LPY + EL + TG + L+ + YE +
Sbjct: 250 MEKMNFKMIELPYVKRELSMFILLPDDIKDGTTGLEQ--LERELTYERLSEWADSKMMTE 307
Query: 250 -VGDFRIPRFKISFGIEVSRVLKALGLVLSFSRKGG--RLTEMVDSHVGVGIFQKSFIEV 306
+ D +P+F + I++ L+ +G+ +F+ +T+ D + I Q SF+ V
Sbjct: 308 TLVDLHLPKFSLEDRIDLRDTLRNMGMTTAFTTNADFRGMTDKKDLAISKVIHQ-SFVAV 366
Query: 307 KEEGTEXXXXXXXVITLKSLPRFDKIDFVADHPFIFMIREDATGVVL 353
E+GTE +I+ + + F DHPF F IR + + +L
Sbjct: 367 DEKGTEAAAATAVIISFTTSVINHVLKFKVDHPFHFFIRHNKSKTIL 413
>pdb|1DB2|A Chain A, Crystal Structure Of Native Plasminogen Activator
Inhibitor- 1
pdb|1DB2|B Chain B, Crystal Structure Of Native Plasminogen Activator
Inhibitor- 1
Length = 377
Score = 112 bits (279), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 84/288 (29%), Positives = 129/288 (44%), Gaps = 28/288 (9%)
Query: 87 LSVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDFQNKAVEVSR-EINFWAEKETNGFI 145
+S + +++ + L F +++++ QVDF VE +R IN W + T G I
Sbjct: 89 ISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQVDFSE--VERARFIINDWVKTHTKGMI 146
Query: 146 KEVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTKEYDFHLLNGGSIKVPFMTSKNKQ 205
+L G+VD ++LV NALYF G W F S T FH +G ++ VP M NK
Sbjct: 147 SHLLGTGAVDQLTRLVLVNALYFNGQWKTPFPDSSTHRRLFHKSDGSTVSVPMMAQTNKF 206
Query: 206 LVTAF---DG--FKVLVLPYKQDELP-----------ALEKKTGSQSGFLKDHIPYEMIE 249
T F DG + +L LPY D L L T S L H M
Sbjct: 207 NYTEFTTPDGHYYDILELPYHGDTLSMFIAAPYEKEVPLSALTNILSAQLISHWKGNMTR 266
Query: 250 VGDFRI-PRFKISFGIEVSRVLKALGLVLSFSRKGGRLTEMVDS---HVGVGIFQKSFIE 305
+ + P+F + +++ + L+ LG+ F T + D HV + + QK IE
Sbjct: 267 LPRLLVLPKFSLETEVDLRKPLENLGMTDMFRPFQADFTSLSDQEPLHVALAL-QKVKIE 325
Query: 306 VKEEGTEXXXXXXXVITLKSLPRFDKIDFVADHPFIFMIREDATGVVL 353
V E GT +++ + P + + D PF+F++R + TG VL
Sbjct: 326 VNESGTVASSSTAVIVSARMAPE----EIIIDRPFLFVVRHNPTGTVL 369
>pdb|1C5G|A Chain A, Plasminogen Activator Inhibitor-1
Length = 402
Score = 111 bits (278), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 84/288 (29%), Positives = 129/288 (44%), Gaps = 28/288 (9%)
Query: 87 LSVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDFQNKAVEVSR-EINFWAEKETNGFI 145
+S + +++ + L F +++++ QVDF VE +R IN W + T G I
Sbjct: 114 ISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQVDFSE--VERARFIINDWVKTHTKGMI 171
Query: 146 KEVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTKEYDFHLLNGGSIKVPFMTSKNKQ 205
+L G+VD ++LV NALYF G W F S T FH +G ++ VP M NK
Sbjct: 172 SNLLGKGAVDQLTRLVLVNALYFNGQWKTPFPDSSTHRRLFHKSDGSTVSVPMMAQTNKF 231
Query: 206 LVTAF---DG--FKVLVLPYKQDELP-----------ALEKKTGSQSGFLKDHIPYEMIE 249
T F DG + +L LPY D L L T S L H M
Sbjct: 232 NYTEFTTPDGHYYDILELPYHGDTLSMFIAAPYEKEVPLSALTNILSAQLISHWKGNMTR 291
Query: 250 VGDFRI-PRFKISFGIEVSRVLKALGLVLSFSRKGGRLTEMVDS---HVGVGIFQKSFIE 305
+ + P+F + +++ + L+ LG+ F + T + D HV + QK IE
Sbjct: 292 LPRLLVLPKFSLETEVDLRKPLENLGMTDMFRQFQADFTSLSDQEPLHVAQAL-QKVKIE 350
Query: 306 VKEEGTEXXXXXXXVITLKSLPRFDKIDFVADHPFIFMIREDATGVVL 353
V E GT +++ + P + + D PF+F++R + TG VL
Sbjct: 351 VNESGTVASSSTAVIVSARMAPE----EIIMDRPFLFVVRHNPTGTVL 394
>pdb|1DVN|A Chain A, Latent Form Of Plasminogen Activator Inhibitor-1 (Pai-1)
pdb|1LJ5|A Chain A, 1.8a Resolution Structure Of Latent Plasminogen Activator
Inhibitor-1(Pai-1)
Length = 379
Score = 111 bits (278), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 84/288 (29%), Positives = 129/288 (44%), Gaps = 28/288 (9%)
Query: 87 LSVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDFQNKAVEVSR-EINFWAEKETNGFI 145
+S + +++ + L F +++++ QVDF VE +R IN W + T G I
Sbjct: 91 ISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQVDFSE--VERARFIINDWVKTHTKGMI 148
Query: 146 KEVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTKEYDFHLLNGGSIKVPFMTSKNKQ 205
+L G+VD ++LV NALYF G W F S T FH +G ++ VP M NK
Sbjct: 149 SNLLGKGAVDQLTRLVLVNALYFNGQWKTPFPDSSTHRRLFHKSDGSTVSVPMMAQTNKF 208
Query: 206 LVTAF---DG--FKVLVLPYKQDELP-----------ALEKKTGSQSGFLKDHIPYEMIE 249
T F DG + +L LPY D L L T S L H M
Sbjct: 209 NYTEFTTPDGHYYDILELPYHGDTLSMFIAAPYEKEVPLSALTNILSAQLISHWKGNMTR 268
Query: 250 VGDFRI-PRFKISFGIEVSRVLKALGLVLSFSRKGGRLTEMVDS---HVGVGIFQKSFIE 305
+ + P+F + +++ + L+ LG+ F + T + D HV + QK IE
Sbjct: 269 LPRLLVLPKFSLETEVDLRKPLENLGMTDMFRQFQADFTSLSDQEPLHVAQAL-QKVKIE 327
Query: 306 VKEEGTEXXXXXXXVITLKSLPRFDKIDFVADHPFIFMIREDATGVVL 353
V E GT +++ + P + + D PF+F++R + TG VL
Sbjct: 328 VNESGTVASSSTAVIVSARMAPE----EIIMDRPFLFVVRHNPTGTVL 371
>pdb|3EOX|A Chain A, High Quality Structure Of Cleaved Pai-1-Stab
Length = 379
Score = 111 bits (278), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 84/288 (29%), Positives = 129/288 (44%), Gaps = 28/288 (9%)
Query: 87 LSVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDFQNKAVEVSR-EINFWAEKETNGFI 145
+S + +++ + L F +++++ QVDF VE +R IN W + T G I
Sbjct: 91 ISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQVDFSE--VERARFIINDWVKTHTKGMI 148
Query: 146 KEVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTKEYDFHLLNGGSIKVPFMTSKNKQ 205
+L G+VD ++LV NALYF G W F S T FH +G ++ VP M NK
Sbjct: 149 SHLLGTGAVDQLTRLVLVNALYFNGQWKTPFPDSSTHRRLFHKSDGSTVSVPMMAQTNKF 208
Query: 206 LVTAF---DG--FKVLVLPYKQDELP-----------ALEKKTGSQSGFLKDHIPYEMIE 249
T F DG + +L LPY D L L T S L H M
Sbjct: 209 NYTEFTTPDGHYYDILELPYHGDTLSMFIAAPYEKEVPLSALTNILSAQLISHWKGNMTR 268
Query: 250 VGDFRI-PRFKISFGIEVSRVLKALGLVLSFSRKGGRLTEMVDS---HVGVGIFQKSFIE 305
+ + P+F + +++ + L+ LG+ F T + D HV + + QK IE
Sbjct: 269 LPRLLVLPKFSLETEVDLRKPLENLGMTDMFRPFQADFTSLSDQEPLHVALAL-QKVKIE 327
Query: 306 VKEEGTEXXXXXXXVITLKSLPRFDKIDFVADHPFIFMIREDATGVVL 353
V E GT +++ + P + + D PF+F++R + TG VL
Sbjct: 328 VNESGTVASSSTAVIVSARMAPE----EIIIDRPFLFVVRHNPTGTVL 371
>pdb|4AQH|A Chain A, Plasminogen Activator Inhibitor Type-1 In Complex With The
Inhibitor Az3976
pdb|4AQH|B Chain B, Plasminogen Activator Inhibitor Type-1 In Complex With The
Inhibitor Az3976
pdb|4AQH|C Chain C, Plasminogen Activator Inhibitor Type-1 In Complex With The
Inhibitor Az3976
Length = 383
Score = 111 bits (278), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 84/288 (29%), Positives = 129/288 (44%), Gaps = 28/288 (9%)
Query: 87 LSVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDFQNKAVEVSR-EINFWAEKETNGFI 145
+S + +++ + L F +++++ QVDF VE +R IN W + T G I
Sbjct: 95 ISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQVDFSE--VERARFIINDWVKTHTKGMI 152
Query: 146 KEVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTKEYDFHLLNGGSIKVPFMTSKNKQ 205
+L G+VD ++LV NALYF G W F S T FH +G ++ VP M NK
Sbjct: 153 SNLLGKGAVDQLTRLVLVNALYFNGQWKTPFPDSSTHRRLFHKSDGSTVSVPMMAQTNKF 212
Query: 206 LVTAF---DG--FKVLVLPYKQDELP-----------ALEKKTGSQSGFLKDHIPYEMIE 249
T F DG + +L LPY D L L T S L H M
Sbjct: 213 NYTEFTTPDGHYYDILELPYHGDTLSMFIAAPYEKEVPLSALTNILSAQLISHWKGNMTR 272
Query: 250 VGDFRI-PRFKISFGIEVSRVLKALGLVLSFSRKGGRLTEMVDS---HVGVGIFQKSFIE 305
+ + P+F + +++ + L+ LG+ F + T + D HV + QK IE
Sbjct: 273 LPRLLVLPKFSLETEVDLRKPLENLGMTDMFRQFQADFTSLSDQEPLHVAQAL-QKVKIE 331
Query: 306 VKEEGTEXXXXXXXVITLKSLPRFDKIDFVADHPFIFMIREDATGVVL 353
V E GT +++ + P + + D PF+F++R + TG VL
Sbjct: 332 VNESGTVASSSTAVIVSARMAPE----EIIMDRPFLFVVRHNPTGTVL 375
>pdb|1A7C|A Chain A, Human Plasminogen Activator Inhibitor Type-1 In Complex
With A Pentapeptide
Length = 379
Score = 111 bits (278), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 84/288 (29%), Positives = 129/288 (44%), Gaps = 28/288 (9%)
Query: 87 LSVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDFQNKAVEVSR-EINFWAEKETNGFI 145
+S + +++ + L F +++++ QVDF VE +R IN W + T G I
Sbjct: 91 ISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQVDFSE--VERARFIINDWVKTHTKGMI 148
Query: 146 KEVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTKEYDFHLLNGGSIKVPFMTSKNKQ 205
+L G+VD ++LV NALYF G W F S T FH +G ++ VP M NK
Sbjct: 149 SNLLGKGAVDQLTRLVLVNALYFNGQWKTPFPDSSTHRRLFHKSDGSTVSVPMMAQTNKF 208
Query: 206 LVTAF---DG--FKVLVLPYKQDELP-----------ALEKKTGSQSGFLKDHIPYEMIE 249
T F DG + +L LPY D L L T S L H M
Sbjct: 209 NYTEFTTPDGHYYDILELPYHGDTLSMFIAAPYEKEVPLSALTNILSAQLISHWKGNMTR 268
Query: 250 VGDFRI-PRFKISFGIEVSRVLKALGLVLSFSRKGGRLTEMVDS---HVGVGIFQKSFIE 305
+ + P+F + +++ + L+ LG+ F + T + D HV + QK IE
Sbjct: 269 LPRLLVLPKFSLETEVDLRKPLENLGMTDMFRQFQADFTSLSDQEPLHVAQAL-QKVKIE 327
Query: 306 VKEEGTEXXXXXXXVITLKSLPRFDKIDFVADHPFIFMIREDATGVVL 353
V E GT +++ + P + + D PF+F++R + TG VL
Sbjct: 328 VNESGTVESSSTAVIVSARMAPE----EIIMDRPFLFVVRHNPTGTVL 371
>pdb|1DVM|A Chain A, Active Form Of Human Pai-1
pdb|1DVM|B Chain B, Active Form Of Human Pai-1
pdb|1DVM|C Chain C, Active Form Of Human Pai-1
pdb|1DVM|D Chain D, Active Form Of Human Pai-1
pdb|3PB1|I Chain I, Crystal Structure Of A Michaelis Complex Between
Plasminogen Activator Inhibitor-1 And Urokinase-Type
Plasminogen Activator
Length = 379
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 83/288 (28%), Positives = 129/288 (44%), Gaps = 28/288 (9%)
Query: 87 LSVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDFQNKAVEVSR-EINFWAEKETNGFI 145
+S + +++ + L F +++++ QVDF VE +R IN W + T G I
Sbjct: 91 ISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQVDFSE--VERARFIINDWVKTHTKGMI 148
Query: 146 KEVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTKEYDFHLLNGGSIKVPFMTSKNKQ 205
+L G+V ++LV NALYF G W F S T FH +G ++ VP M NK
Sbjct: 149 SHLLGTGAVQQLTRLVLVNALYFNGQWKTPFPDSSTHRRLFHKSDGSTVSVPMMAQTNKF 208
Query: 206 LVTAF---DG--FKVLVLPYKQDELP-----------ALEKKTGSQSGFLKDHIPYEMIE 249
T F DG + +L LPY D L L T S L H M
Sbjct: 209 NYTEFTTPDGHYYDILELPYHGDTLSMFIAAPYEKEVPLSALTNILSAQLISHWKGNMTR 268
Query: 250 VGDFRI-PRFKISFGIEVSRVLKALGLVLSFSRKGGRLTEMVDS---HVGVGIFQKSFIE 305
+ + P+F + +++ + L+ LG+ F + T + D HV + + QK IE
Sbjct: 269 LPRLLVLPKFSLETEVDLRKPLENLGMTDMFRQFQADFTSLSDQEPLHVALAL-QKVKIE 327
Query: 306 VKEEGTEXXXXXXXVITLKSLPRFDKIDFVADHPFIFMIREDATGVVL 353
V E GT +++ + P + + D PF+F++R + TG VL
Sbjct: 328 VNESGTVASSSTAVIVSARMAPE----EIIIDRPFLFVVRHNPTGTVL 371
>pdb|3R4L|A Chain A, Human Very Long Half Life Plasminogen Activator Inhibitor
Type-1
Length = 379
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 83/288 (28%), Positives = 128/288 (44%), Gaps = 28/288 (9%)
Query: 87 LSVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDFQNKAVEVSR-EINFWAEKETNGFI 145
+S + +++ + L F +++++ QVDF VE +R IN W + T G I
Sbjct: 91 ISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQVDFSE--VERARFIINDWVKTHTKGMI 148
Query: 146 KEVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTKEYDFHLLNGGSIKVPFMTSKNKQ 205
+L G+VD ++LV NALYF G W F S T FH +G ++ VP M NK
Sbjct: 149 SNLLGKGAVDQLTRLVLVNALYFNGCWKTPFPDSSTHRRLFHKSDGSTVSVPMMAQTNKF 208
Query: 206 LVTAF---DG--FKVLVLPYKQDELP-----------ALEKKTGSQSGFLKDHIPYEMIE 249
T F DG + +L LPY D L L T S L H M
Sbjct: 209 NYTEFTTPDGHYYDILELPYHGDTLSMFIAAPYEKEVPLSALTNILSAQLISHWKGNMTR 268
Query: 250 VGDFRI-PRFKISFGIEVSRVLKALGLVLSFSRKGGRLTEMVDS---HVGVGIFQKSFIE 305
+ + P+F + +++ + L+ LG+ F + T + D HV + QK IE
Sbjct: 269 LPRLLVLPKFSLETEVDLRKPLENLGMTDMFRQFQADFTSLSDQEPLHVAQAL-QKVKIE 327
Query: 306 VKEEGTEXXXXXXXVITLKSLPRFDKIDFVADHPFIFMIREDATGVVL 353
V E T +++ + P + + D PF+F++R + TG VL
Sbjct: 328 VNESCTVASSSTAVIVSARMAPE----EIIMDRPFLFVVRHNPTGTVL 371
>pdb|3VVJ|A Chain A, Structure Of Ovalbumin From Emu (Dromaius Novaehollandiae)
pdb|3VVJ|B Chain B, Structure Of Ovalbumin From Emu (Dromaius Novaehollandiae)
pdb|3VVJ|C Chain C, Structure Of Ovalbumin From Emu (Dromaius Novaehollandiae)
Length = 392
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/289 (27%), Positives = 128/289 (44%), Gaps = 32/289 (11%)
Query: 87 LSVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDFQNKAVEVSREINFWAEKETNGFIK 146
LS+A+ ++ +++ + Q + +YK S V FQ A + IN W E +TNG IK
Sbjct: 100 LSLASKLYAEETYPVLPEYLQCIKELYKGSLETVSFQTAADQARELINSWVETQTNGVIK 159
Query: 147 EVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTKEYDFHLLNGGSIKVPFMTSKN--K 204
L PGSVD +++V +A+YFKG W +AF T+E F + S V M K
Sbjct: 160 NFLQPGSVDPQTEMVLVDAIYFKGTWEKAFKDEDTQEVPFRITEQESKPVQMMYQAGSFK 219
Query: 205 QLVTAFDGFKVLVLPYKQDELPALEKKTGSQSGF-----------LKDHIPYEMIEVGDF 253
A + K+L LPY EL SG L + M+E
Sbjct: 220 VATVAAEKMKILELPYASGELSMFVLLPDDISGLEQLETTISIEKLSEWTSSNMMEDRKM 279
Query: 254 RI--PRFKISFGIEVSRVLKALGLVLSFSRKG-------GRLTEMVDSHVGVGIFQKSFI 304
++ P KI ++ VL ALG+ FS + +M ++ G +++
Sbjct: 280 KVYLPHMKIEEKYNLTSVLVALGMTDLFSPSANLSGISTAQTLKMSEAIHG------AYV 333
Query: 305 EVKEEGTEXXXXXXXVITLKSLPRFDKIDFVADHPFIFMIREDATGVVL 353
E+ E G+E ++ S+ +F DHPF+F+I+ + + +L
Sbjct: 334 EIYEAGSEMATSTGVLVEAASVSE----EFRVDHPFLFLIKHNPSNSIL 378
>pdb|2H4R|A Chain A, Crystal Structure Of Wildtype Ment In The Native
Conformation
Length = 415
Score = 108 bits (270), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 81/300 (27%), Positives = 139/300 (46%), Gaps = 28/300 (9%)
Query: 80 SANGGPR----LSVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDFQNKAVEVSREINF 135
+A PR L AN ++++++ + T+ Q YKA +V+F+ + +EIN
Sbjct: 108 TAFNKPRNNYSLRSANRIYVEKTYALLPTYLQLSKKYYKAEPQKVNFKTAPEQSRKEINT 167
Query: 136 WAEKETNGFIKEVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTKEYDFHLLNGGS-- 193
W EK+T IK +L V +++L+ NA+YFK W F + KT F L S
Sbjct: 168 WVEKQTESKIKNLLSSDDVKATTRLILVNAIYFKAEWEVKFQAEKTSIQPFRLSKNKSKP 227
Query: 194 IKVPFMTSKNKQLVTAFDGFKVLVLPYKQDELPAL-----EKKTGSQSGF--LKDHIPYE 246
+K+ +M L+ FK++ LPY + EL + K G+ +G L+ + YE
Sbjct: 228 VKMMYMRDTFPVLIMEKMNFKMIELPYVKRELSMFILLPDDIKDGT-TGLEQLERELTYE 286
Query: 247 MIE-----------VGDFRIPRFKISFGIEVSRVLKALGLVLSFSRKGG--RLTEMVDSH 293
+ + D +P+F + I++ L+ +G+ +F+ +T+ D
Sbjct: 287 RLSEWADSKMMTETLVDLHLPKFSLEDRIDLRDTLRNMGMTTAFTTNADFRGMTDKKDLA 346
Query: 294 VGVGIFQKSFIEVKEEGTEXXXXXXXVITLKSLPRFDKIDFVADHPFIFMIREDATGVVL 353
+ I Q SF+ V E+GTE +I+ + + F DHPF F IR + + +L
Sbjct: 347 ISKVIHQ-SFVAVDEKGTEAAAATAVIISFTTSVINHVLKFKVDHPFHFFIRHNKSKTIL 405
>pdb|3Q02|A Chain A, Crystal Structure Of Plasminogen Activator Inhibitor-1 In
A Metastable Active Conformation.
pdb|3Q02|B Chain B, Crystal Structure Of Plasminogen Activator Inhibitor-1 In
A Metastable Active Conformation.
pdb|3Q03|A Chain A, Crystal Structure Of Plasminogen Activator Inhibitor-1 In
A Metastable Active Conformation.
pdb|3Q03|B Chain B, Crystal Structure Of Plasminogen Activator Inhibitor-1 In
A Metastable Active Conformation
Length = 379
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 83/288 (28%), Positives = 129/288 (44%), Gaps = 28/288 (9%)
Query: 87 LSVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDFQNKAVEVSR-EINFWAEKETNGFI 145
+S + +++ + L F +++++ QVDF VE +R IN W + T G I
Sbjct: 91 ISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQVDFSE--VERARFIINDWVKTHTKGMI 148
Query: 146 KEVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTKEYDFHLLNGGSIKVPFMTSKNKQ 205
+L G+VD ++LV NALYF G + F S T FH +G ++ VP M NK
Sbjct: 149 SNLLGKGAVDQLTRLVLVNALYFNGQFKTPFPDSSTHRRLFHKSDGSTVSVPMMAQTNKF 208
Query: 206 LVTAF---DG--FKVLVLPYKQDELP-----------ALEKKTGSQSGFLKDHIPYEMIE 249
T F DG + +L LPY D L L T S L H M
Sbjct: 209 NYTEFTTPDGHYYDILELPYHGDTLSMFIAAPYEKEVPLSALTNILSAQLISHWKGNMTR 268
Query: 250 VGDFRI-PRFKISFGIEVSRVLKALGLVLSFSRKGGRLTEMVDS---HVGVGIFQKSFIE 305
+ + P+F + +++ + L+ LG+ F + T + D HV + QK IE
Sbjct: 269 LPRLLVLPKFSLETEVDLRKPLENLGMTDMFRQFQADFTSLSDQEPLHVAQAL-QKVKIE 327
Query: 306 VKEEGTEXXXXXXXVITLKSLPRFDKIDFVADHPFIFMIREDATGVVL 353
V E GT +++ + P + + D PF+F++R + TG VL
Sbjct: 328 VNESGTVASSSTAVIVSARMAPE----EIIMDRPFLFVVRHNPTGTVL 371
>pdb|3LW2|A Chain A, Mouse Plasminogen Activator Inhibitor-1 (Pai-1)
Length = 379
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 99/352 (28%), Positives = 155/352 (44%), Gaps = 43/352 (12%)
Query: 30 SPLSIHVLLSMIAAGSKGPTXXXXXXXXXXXXNEQ------QNFASELVAIVFADGSANG 83
SP + +L+M+ + G T NE+ + + EL+ G N
Sbjct: 35 SPYGVSSVLAMLQMTTAGKTRRQIQDAMGFKVNEKGTAHALRQLSKELM------GPWNK 88
Query: 84 GPRLSVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDFQNKAVEVSR-EINFWAEKETN 142
+S A+ +++ + L F +++ QVDF VE +R IN W E+ T
Sbjct: 89 N-EISTADAIFVQRDLELVQGFMPHFFKLFQTMVKQVDFSE--VERARFIINDWVERHTK 145
Query: 143 GFIKEVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTKEYDFHLLNGGSIKVPFMTSK 202
G I ++L G+VD+ ++LV NALYF G W F + T + FH +G ++ VP M
Sbjct: 146 GMINDLLAKGAVDELTRLVLVNALYFSGQWKTPFLEASTHQRLFHKSDGSTVSVPMMAQS 205
Query: 203 NKQLVTAF---DG--FKVLVLPYKQDEL-----PALEKKTGSQSGFLKDHIPYEMIEV-- 250
NK T F DG + V+ LPY+ D L EK + L + + E+I
Sbjct: 206 NKFNYTEFTTPDGLEYDVVELPYQGDTLSMFIAAPFEKDVHLSA--LTNILDAELIRQWK 263
Query: 251 GDF-RIPR------FKISFGIEVSRVLKALGLVLSFSRKGGRLTEMVDS-HVGVG-IFQK 301
G+ R+PR F + +++ L+ LG+ FS T + D + V QK
Sbjct: 264 GNMTRLPRLLILPKFSLETEVDLRGPLEKLGMPDMFSATLADFTSLSDQEQLSVAQALQK 323
Query: 302 SFIEVKEEGTEXXXXXXXVITLKSLPRFDKIDFVADHPFIFMIREDATGVVL 353
IEV E GT VI+ + P + V D F+F++R + T +L
Sbjct: 324 VRIEVNESGTVASSSTAFVISARMAP----TEMVIDRSFLFVVRHNPTETIL 371
>pdb|1K9O|I Chain I, Crystal Structure Of Michaelis Serpin-Trypsin Complex
Length = 378
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 84/296 (28%), Positives = 144/296 (48%), Gaps = 26/296 (8%)
Query: 75 VFADGS----ANGGPRLSVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDFQNKAVEVS 130
VFAD + A G L +A+ +++ + L + F +++ + VDF K+VE +
Sbjct: 76 VFADLNRGVRAVKGVDLKMASKIYVAKGLELNDDFAAVSRDVFGSEVQNVDFV-KSVEAA 134
Query: 131 REINFWAEKETNGFIKEVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTKEYDFHLLN 190
IN W E +TN IK ++ P ++D++++ V NA+YFKG W + F +T + DFH+
Sbjct: 135 GAINKWVEDQTNNRIKNLVDPDALDETTRSVLVNAIYFKGSWKDKFVKERTMDRDFHVSK 194
Query: 191 GGSIKVPFMTSKN------------KQLVTAFDGFK---VLVLPYKQDELPALEKKTGSQ 235
+IKVP M K K + +++G + +++LP + D + ALE+K
Sbjct: 195 DKTIKVPTMIGKKDVRYADVPELDAKMIEMSYEGDQASMIIILPNQVDGITALEQKLKDP 254
Query: 236 SGFLKDHIPYEMIEVGDFRIPRFKISFGIEVSRVLKALGLVLSFSRKGGRLTEMVDSHVG 295
+ EV + +P+FKI ++ VL + + F+ RL ++ +
Sbjct: 255 KALSRAEERLYNTEV-EITLPKFKIETTTDLKEVLSNMNIKKLFTPGAARLENLLKTKES 313
Query: 296 VGI---FQKSFIEVKEEGTEXXXXXXXVITLKSLPRFDKIDFVADHPFIFMIREDA 348
+ + QK+FIEV EEG E I KSL + ++ D PF F ++ D
Sbjct: 314 LTVDAAIQKAFIEVNEEGAEAAAANAFGIVPKSLILYPEVHI--DRPFYFELKIDG 367
>pdb|4GA7|A Chain A, Crystal Structure Of Human Serpinb1 Mutant
pdb|4GA7|B Chain B, Crystal Structure Of Human Serpinb1 Mutant
Length = 389
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 111/372 (29%), Positives = 165/372 (44%), Gaps = 33/372 (8%)
Query: 13 DITLSLSKHIKAPTSSSSPLSIHVLLSMIAAGSKGPTXXXXXXXXXXXXNEQ--QNFASE 70
D+ L+LS++ A SP SI ++M+ G++G T E+ F S
Sbjct: 24 DLFLALSENNPAGNIFISPFSISSAMAMVFLGTRGNTAAQLSKTFHFNTVEEVHSRFQS- 82
Query: 71 LVAIVFADGSANGGPR-LSVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDFQNKAVEV 129
+ AD + G L +AN ++ +++ +F F + Y A VDFQ+ + +
Sbjct: 83 ----LNADINKRGASYILKLANRLYGEKTYNFLPEFLVSTQKTYGADLASVDFQHASEDA 138
Query: 130 SREINFWAEKETNGFIKEVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTKEYDFHLL 189
+ IN W + +T G I E+L G VD+ +KLV NA+YFKG W + F T F L
Sbjct: 139 RKTINQWVKGQTEGKIPELLASGMVDNMTKLVLVNAIYFKGNWKDKFMKEATTNAPFRLN 198
Query: 190 NGGSIKVPFMTSKNKQLVTAFDGFK--VLVLPYKQDELPAL-------------EKKTGS 234
V M K K + K VL LPY+ +EL + KK
Sbjct: 199 KKDRKTVKMMYQKKKFAYGYIEDLKCRVLELPYQGEELSMVILLPDDIEDESTGLKKIEE 258
Query: 235 QSGFLKDH-----IPYEMIEVGDFRIPRFKISFGIEVSRVLKALGLVLSFSRKGGRLTEM 289
Q K H + IEV + +PRFK+ ++ L LG+ F+ L+ M
Sbjct: 259 QLTLEKLHEWTKPENLDFIEV-NVSLPRFKLEESYTLNSDLARLGVQDLFNSSKADLSGM 317
Query: 290 VDSH--VGVGIFQKSFIEVKEEGTEXXXXXXXVITLKSLPRFDKIDFVADHPFIFMIRED 347
+ I KSF+EV EEGTE + T + +F ADHPF+F IR +
Sbjct: 318 SGARDIFISKIVHKSFVEVNEEGTEAAAATAGIATF--CMDDPEENFTADHPFLFFIRHN 375
Query: 348 ATGVVLSLVMFS 359
++G +L L FS
Sbjct: 376 SSGSILFLGRFS 387
>pdb|1SEK|A Chain A, The Structure Of Active Serpin K From Manduca Sexta And A
Model For Serpin-Protease Complex Formation
Length = 378
Score = 102 bits (253), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 71/253 (28%), Positives = 126/253 (49%), Gaps = 26/253 (10%)
Query: 75 VFADGS----ANGGPRLSVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDFQNKAVEVS 130
VFAD + A G L +A+ +++ + L + F +++ + VDF K+VE +
Sbjct: 76 VFADLNRGVRAVKGVDLKMASKIYVAKGLELNDDFAAVSRDVFGSEVQNVDFV-KSVEAA 134
Query: 131 REINFWAEKETNGFIKEVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTKEYDFHLLN 190
IN W E +TN IK ++ P ++D++++ V NA+YFKG W + F+ +T + DFH+
Sbjct: 135 GAINKWVEDQTNNRIKNLVDPDALDETTRSVLVNAIYFKGSWKDKFNKERTMDRDFHVSK 194
Query: 191 GGSIKVPFMTSKN------------KQLVTAFDGFK---VLVLPYKQDELPALEKKTGSQ 235
+IKVP M K K + +++G + +++LP + D + ALE+K
Sbjct: 195 DKTIKVPTMIGKKDVRYADVPELDAKMIEMSYEGDQASMIIILPNQVDGITALEQKLKDP 254
Query: 236 SGFLKDHIPYEMIEVGDFRIPRFKISFGIEVSRVLKALGLVLSFSRKGGRLTEMVDS--- 292
+ EV + +P+FKI ++ VL + + F+ RL ++ +
Sbjct: 255 KALSRAEERLYNTEV-EIYLPKFKIETTTDLKEVLSNMNIKKLFTPGAARLENLLKTKES 313
Query: 293 -HVGVGIFQKSFI 304
+V I QK+FI
Sbjct: 314 LYVDAAI-QKAFI 325
>pdb|3F02|A Chain A, Cleaved Human Neuroserpin
pdb|3F02|B Chain B, Cleaved Human Neuroserpin
Length = 359
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 90/335 (26%), Positives = 150/335 (44%), Gaps = 45/335 (13%)
Query: 12 TDITLSLSKHIKAPTSSS----SPLSIHVLLSMIAAGSKGPTXXXXXXXX---XXXXNEQ 64
D+++++ ++A SPLSI + + M+ G++G T E+
Sbjct: 24 ADLSVNMYNRLRATGEDENILFSPLSIALAMGMMELGAQGSTQKEIRHSMGYDSLKNGEE 83
Query: 65 QNFASELVAIVFADGSANGGPRLSVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDFQN 124
+F E +V A S + +AN +++ F Q + + A+ + VDF +
Sbjct: 84 FSFLKEFSNMVTAKESQ---YVMKIANSLFVQNGFHVNEEFLQMMKKYFNAAVNHVDF-S 139
Query: 125 KAVEVSREINFWAEKETNGFIKEVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTKEY 184
+ V V+ IN W E TN +K+++ P D ++ L NA+YFKG W F T+ +
Sbjct: 140 QNVAVANYINKWVENNTNNLVKDLVSPRDFDAATYLALINAVYFKGNWKSQFRPENTRTF 199
Query: 185 DFHLLNGGSIKVPFMTSKNKQLVTAF-DG-------FKVLVLPYKQDE------------ 224
F + +++P M + + F DG ++VL +PY+ DE
Sbjct: 200 SFTKDDESEVQIPMMYQQGEFYYGEFSDGSNEAGGIYQVLEIPYEGDEISMMLVLSRQEV 259
Query: 225 -LPALEKKTGSQ-SGFLKDHIPYEMIEVGDFRIPRFKISFGIEVSRVLKALGLVLSFSRK 282
L LE +Q + + + +EV +PRF + I++ VLKALG+ F K
Sbjct: 260 PLATLEPLVKAQLVEEWANSVKKQKVEV---YLPRFTVEQEIDLKDVLKALGITEIFI-K 315
Query: 283 GGRLTEMVDSHVGVGIF-----QKSFIEVKEEGTE 312
LT + D+ IF KSF+EV EEG+E
Sbjct: 316 DANLTGLSDNK---EIFLSKAIHKSFLEVNEEGSE 347
>pdb|2ZV6|A Chain A, Crystal Structure Of Human Squamous Cell Carcinoma Antigen
1
pdb|2ZV6|B Chain B, Crystal Structure Of Human Squamous Cell Carcinoma Antigen
1
pdb|2ZV6|C Chain C, Crystal Structure Of Human Squamous Cell Carcinoma Antigen
1
Length = 401
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 84/298 (28%), Positives = 133/298 (44%), Gaps = 35/298 (11%)
Query: 87 LSVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDFQNKAVEVSREINFWAEKETNGFIK 146
L +AN ++ +++ F + + Y+ S VDF N E ++IN W E +TN IK
Sbjct: 112 LKIANKLFGEKTYLFLQEYLDAIKKFYQTSVESVDFANAPEESRKKINSWVESQTNEKIK 171
Query: 147 EVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTKEYDFHLLNGGSIKVPFMTSKNKQL 206
++P G++ ++ LV NA+YFKG W + F+ TKE F T K+ Q+
Sbjct: 172 NLIPEGNIGSNTTLVLVNAIYFKGQWEKKFNKEDTKEEKFWPNKN--------TYKSIQM 223
Query: 207 VTAFDGF----------KVLVLPYKQ-------------DELPALEKKTGSQSGFLKDHI 243
+ + F KVL +PYK D L LE+K ++ +
Sbjct: 224 MRQYTSFHFASLEDVQAKVLEIPYKGKDLSMIVLLPNEIDGLQKLEEKLTAEKLMEWTSL 283
Query: 244 PYEMIEVGDFRIPRFKISFGIEVSRVLKALGLVLSFSRKGGRLTEMVDSH--VGVGIFQK 301
D +PRFK+ ++ L+ +G+V F+ L+ M S V G+ K
Sbjct: 284 QNMRETRVDLHLPRFKVEESYDLKDTLRTMGMVDIFNGDAD-LSGMTGSRGLVLSGVLHK 342
Query: 302 SFIEVKEEGTEXXXXXXXVITLKSLPRFDKIDFVADHPFIFMIREDATGVVLSLVMFS 359
+F+EV EE V+ S P +F +HPF+F IR++ T +L FS
Sbjct: 343 AFVEVTEE-GAEAAAATAVVGFGSSPTSTNEEFHCNHPFLFFIRQNKTNSILFYGRFS 399
>pdb|2H4Q|A Chain A, Crystal Structure Of A M-Loop Deletion Variant Of Ment In
The Cleaved Conformation
Length = 382
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 80/315 (25%), Positives = 139/315 (44%), Gaps = 26/315 (8%)
Query: 30 SPLSIHVLLSMIAAGSKGPTXXXXXXXXXXXXNEQQNFASELVAIVFADGSANGGPRLSV 89
SP SI L++ +KG T + +N S ++ A L
Sbjct: 72 SPWSISSALALTYLAAKGSTAREMAEVLHF--EQAENIHSGFKELLTAFNKPRNNYSLRS 129
Query: 90 ANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDFQNKAVEVSREINFWAEKETNGFIKEVL 149
AN ++++++ + T+ Q YKA +V+F+ + +EIN W EK+T IK +L
Sbjct: 130 ANRIYVEKTYALLPTYLQLSKKYYKAEPQKVNFKTAPEQSRKEINTWVEKQTESKIKNLL 189
Query: 150 PPGSVDDSSKLVFANALYFKGVWNEAFDSSKTKEYDFHLLNGGS--IKVPFMTSKNKQLV 207
V +++L+ NA+YFK W F + KT F L S +K+ +M L+
Sbjct: 190 SSDDVKATTRLILVNAIYFKAEWEVKFQAEKTSIQPFRLSKNKSKPVKMMYMRDTFPVLI 249
Query: 208 TAFDGFKVLVLPYKQDELPAL-----EKKTGSQSGF--LKDHIPYEMIE----------- 249
FK++ LPY + EL + K G+ +G L+ + YE +
Sbjct: 250 MEKMNFKMIELPYVKRELSMFILLPDDIKDGT-TGLEQLERELTYERLSEWADSKMMTET 308
Query: 250 VGDFRIPRFKISFGIEVSRVLKALGLVLSFSRKGG--RLTEMVDSHVGVGIFQKSFIEVK 307
+ D +P+F + I++ L+ +G+ +F+ +T+ D + I Q SF+ V
Sbjct: 309 LVDLHLPKFSLEDRIDLRDTLRNMGMTTAFTTNADFRGMTDKKDLAISKVIHQ-SFVAVD 367
Query: 308 EEGTEXXXXXXXVIT 322
E+GTE +I+
Sbjct: 368 EKGTEAVAATAVIIS 382
>pdb|1JTI|A Chain A, Loop-Inserted Structure Of P1-P1' Cleaved Ovalbumin Mutant
R339t
pdb|1JTI|B Chain B, Loop-Inserted Structure Of P1-P1' Cleaved Ovalbumin Mutant
R339t
Length = 385
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 78/284 (27%), Positives = 123/284 (43%), Gaps = 24/284 (8%)
Query: 88 SVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDFQNKAVEVSREINFWAEKETNGFIKE 147
S+A+ ++ ++ + Q V +Y+ ++FQ A + IN W E +TNG I+
Sbjct: 100 SLASRLYAEERYPILPEYLQCVKELYRGGLEPINFQTAADQARELINSWVESQTNGIIRN 159
Query: 148 VLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTKEYDFHLLNGGSIKVPFMTSKN--KQ 205
VL P SVD + +V NA+ FKG+W + F T+ F + S V M +
Sbjct: 160 VLQPSSVDSQTAMVLVNAIVFKGLWEKTFKDEDTQAMPFRVTEQESKPVQMMYQIGLFRV 219
Query: 206 LVTAFDGFKVLVLPYKQDELPALEKKTGSQSGF--LKDHIPYEMI------EVGDFR--- 254
A + K+L LP+ + L SG L+ I +E + V + R
Sbjct: 220 ASMASEKMKILELPFASGTMSMLVLLPDEVSGLEQLESIINFEKLTEWTSSNVMEERKIK 279
Query: 255 --IPRFKISFGIEVSRVLKALGLVLSFSRKGGRLTEMVDSHVGVGIFQ---KSFIEVKEE 309
+PR K+ ++ VL A+G+ FS + S + I Q + E+ E
Sbjct: 280 VYLPRMKMEEKYNLTSVLMAMGITDVFSSSAN--LSGISSAESLKISQAVHAAHAEINEA 337
Query: 310 GTEXXXXXXXVITLKSLPRFDKIDFVADHPFIFMIREDATGVVL 353
GTE + S+ +F ADHPF+F I+ AT VL
Sbjct: 338 GTEVVGSAEAGVDAASVSE----EFRADHPFLFCIKHIATNAVL 377
>pdb|4DY0|A Chain A, Crystal Structure Of Native Protease Nexin-1 With Heparin
pdb|4DY0|B Chain B, Crystal Structure Of Native Protease Nexin-1 With Heparin
pdb|4DY7|C Chain C, Crystal Structures Of Protease Nexin-1 In Complex With
S195a Thrombin
pdb|4DY7|F Chain F, Crystal Structures Of Protease Nexin-1 In Complex With
S195a Thrombin
Length = 379
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 77/293 (26%), Positives = 128/293 (43%), Gaps = 36/293 (12%)
Query: 87 LSVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDFQNKAVEVSREINFWAEKETNGFIK 146
++VAN V++ + + F ++++ V+F++ A IN W + ET I
Sbjct: 89 VTVANAVFVKNASEIEVPFVTRNKDVFQCEVRNVNFEDPA-SACDSINAWVKNETRDMID 147
Query: 147 EVLPPGSVDDS-SKLVFANALYFKGVWNEAFDSSKTKEYDFHLLNGGSIKVPFMTSKNKQ 205
+L P +D ++LV NA+YFKG+W F TK+ F +G S +VP + Q
Sbjct: 148 NLLSPDLIDGVLTRLVLVNAVYFKGLWKSRFQPENTKKRTFVAADGKSYQVPMLA----Q 203
Query: 206 LVTAFDG---------FKVLVLPYKQDE---LPALEKKTGSQSGFLKDHIPYEMIEVG-- 251
L G + + LPY + L AL ++ + + HI + I+
Sbjct: 204 LSVFRCGSTSAPNDLWYNFIELPYHGESISMLIALPTESSTPLSAIIPHISTKTIDSWMS 263
Query: 252 -------DFRIPRFKISFGIEVSRVLKALGLVLSFSRKGGRLTEMV----DSHVGVGIFQ 300
+P+F ++ LK LG+ F ++ + HV I Q
Sbjct: 264 IMVPKRVQVILPKFTAVAQTDLKEPLKVLGITDMFDSSKANFAKITTGSENLHVS-HILQ 322
Query: 301 KSFIEVKEEGTEXXXXXXXVITLKSLPRFDKIDFVADHPFIFMIREDATGVVL 353
K+ IEV E+GT+ ++ +S P + F+ D PF+F IR + TG VL
Sbjct: 323 KAKIEVSEDGTKASAATTAILIARSSPPW----FIVDRPFLFFIRHNPTGAVL 371
>pdb|1HLE|A Chain A, Crystal Structure Of Cleaved Equine Leucocyte Elastase
Inhibitor Determined At 1.95 Angstroms Resolution
Length = 345
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 86/301 (28%), Positives = 135/301 (44%), Gaps = 29/301 (9%)
Query: 30 SPLSIHVLLSMIAAGSKGPTXXXXXXXXXXXXNE--QQNFASELVAIVFADGSANGGPR- 86
SPLSI L+MI G++G T E F S + AD + G P
Sbjct: 32 SPLSISSALAMIFLGTRGNTAAQVSKALYFDTVEDIHSRFQS-----LNADINKPGAPYI 86
Query: 87 LSVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDFQNKAVEVSREINFWAEKETNGFIK 146
L +AN ++ +++ +F F + +Y A VDFQ + +EIN W + +T G I
Sbjct: 87 LKLANRLYGEKTYNFLADFLASTQKMYGAELASVDFQQAPEDARKEINEWVKGQTEGKIP 146
Query: 147 EVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTKEYDFHLLNGGSIKVPFMTSKNKQL 206
E+L G VD+ +KLV NA+YFKG W + F T++ F L + V M K K
Sbjct: 147 ELLVKGMVDNMTKLVLVNAIYFKGNWQQKFMKEATRDAPFRLNKKDTKTVKMMYQKKKFP 206
Query: 207 VTAFDGFK--VLVLPYKQDELPAL--------EKKTGSQS-------GFLKDHIPYEMIE 249
+ K VL LPY+ EL + ++ TG + L++ E +
Sbjct: 207 YNYIEDLKCRVLELPYQGKELSMIILLPDDIEDESTGLEKIEKQLTLDKLREWTKPENLY 266
Query: 250 VGDFRI--PRFKISFGIEVSRVLKALGLVLSFSRKGGRLTEMVDSH--VGVGIFQKSFIE 305
+ + + PRFK+ +++ L LG+ F+R L+ M + I KSF++
Sbjct: 267 LAEVNVHLPRFKLEESYDLTSHLARLGVQDLFNRGKADLSGMSGARDLFVSKIIHKSFVD 326
Query: 306 V 306
+
Sbjct: 327 L 327
>pdb|1OVA|C Chain C, Crystal Structure Of Uncleaved Ovalbumin At 1.95 Angstroms
Resolution
pdb|1OVA|D Chain D, Crystal Structure Of Uncleaved Ovalbumin At 1.95 Angstroms
Resolution
Length = 386
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 78/284 (27%), Positives = 123/284 (43%), Gaps = 24/284 (8%)
Query: 88 SVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDFQNKAVEVSREINFWAEKETNGFIKE 147
S+A+ ++ ++ + Q V +Y+ ++FQ A + IN W E +TNG I+
Sbjct: 101 SLASRLYAEERYPILPEYLQCVKELYRGGLEPINFQTAADQARELINSWVESQTNGIIRN 160
Query: 148 VLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTKEYDFHLLNGGSIKVPFMTSKN--KQ 205
VL P SVD + +V NA+ FKG+W +AF T+ F + S V M +
Sbjct: 161 VLQPSSVDSQTAMVLVNAIVFKGLWEKAFKDEDTQAMPFRVTEQESKPVQMMYQIGLFRV 220
Query: 206 LVTAFDGFKVLVLPYKQDELPALEKKTGSQSGF--LKDHIPYEMI------EVGDFR--- 254
A + K+L LP+ + L SG L+ I +E + V + R
Sbjct: 221 ASMASEKMKILELPFASGTMSMLVLLPDEVSGLEQLESIINFEKLTEWTSSNVMEERKIK 280
Query: 255 --IPRFKISFGIEVSRVLKALGLVLSFSRKGGRLTEMVDSHVGVGIFQ---KSFIEVKEE 309
+PR K+ ++ VL A+G+ FS + S + I Q + E+ E
Sbjct: 281 VYLPRMKMEEKYNLTSVLMAMGITDVFSSSAN--LSGISSAESLKISQAVHAAHAEINEA 338
Query: 310 GTEXXXXXXXVITLKSLPRFDKIDFVADHPFIFMIREDATGVVL 353
G E + S+ +F ADHPF+F I+ AT VL
Sbjct: 339 GREVVGSAEAGVDAASVSE----EFRADHPFLFCIKHIATNAVL 378
>pdb|1OVA|B Chain B, Crystal Structure Of Uncleaved Ovalbumin At 1.95 Angstroms
Resolution
Length = 386
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 79/284 (27%), Positives = 124/284 (43%), Gaps = 24/284 (8%)
Query: 88 SVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDFQNKAVEVSREINFWAEKETNGFIKE 147
S+A+ ++ ++ + Q V +Y+ ++FQ A + IN W E +TNG I+
Sbjct: 101 SLASRLYAEERYPILPEYLQCVKELYRGGLEPINFQTAADQARELINSWVESQTNGIIRN 160
Query: 148 VLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTKEYDFHLLNGGSIKVPFMTSKN--KQ 205
VL P SVD + +V NA+ FKG+W +AF T+ F + S V M +
Sbjct: 161 VLQPSSVDSQTAMVLVNAIVFKGLWEKAFKDEDTQAMPFRVTEQESKPVQMMYQIGLFRV 220
Query: 206 LVTAFDGFKVLVLPYKQDELPALEKKTGSQSGF--LKDHIPYEMI------EVGDFR--- 254
A + K+L LP+ + L SG L+ I +E + V + R
Sbjct: 221 ASMASEKMKILELPFASGTMSMLVLLPDEVSGLEQLESIINFEKLTEWTSSNVMEERKIK 280
Query: 255 --IPRFKISFGIEVSRVLKALGLVLSFSRKGGRLTEMVDSHVGVGIFQ---KSFIEVKEE 309
+PR K+ ++ VL A+G+ FS + S + I Q + E+ E
Sbjct: 281 VYLPRMKMEEKYNLTSVLMAMGITDVFSSSAN--LSGISSAESLKISQAVHAAHAEINEA 338
Query: 310 GTEXXXXXXXVITLKSLPRFDKIDFVADHPFIFMIREDATGVVL 353
G E + S+ +F ADHPF+F I+ AT VL
Sbjct: 339 GREVVGXAEAGVDAASVSE----EFRADHPFLFCIKHIATNAVL 378
>pdb|1OVA|A Chain A, Crystal Structure Of Uncleaved Ovalbumin At 1.95 Angstroms
Resolution
Length = 386
Score = 95.1 bits (235), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 79/284 (27%), Positives = 124/284 (43%), Gaps = 24/284 (8%)
Query: 88 SVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDFQNKAVEVSREINFWAEKETNGFIKE 147
S+A+ ++ ++ + Q V +Y+ ++FQ A + IN W E +TNG I+
Sbjct: 101 SLASRLYAEERYPILPEYLQCVKELYRGGLEPINFQTAADQARELINSWVESQTNGIIRN 160
Query: 148 VLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTKEYDFHLLNGGSIKVPFMTSKN--KQ 205
VL P SVD + +V NA+ FKG+W +AF T+ F + S V M +
Sbjct: 161 VLQPSSVDSQTAMVLVNAIVFKGLWEKAFKDEDTQAMPFRVTEQESKPVQMMYQIGLFRV 220
Query: 206 LVTAFDGFKVLVLPYKQDELPALEKKTGSQSGF--LKDHIPYEMI------EVGDFR--- 254
A + K+L LP+ + L SG L+ I +E + V + R
Sbjct: 221 ASMASEKMKILELPFASGTMSMLVLLPDEVSGLEQLESIINFEKLTEWTSSNVMEERKIK 280
Query: 255 --IPRFKISFGIEVSRVLKALGLVLSFSRKGGRLTEMVDSHVGVGIFQ---KSFIEVKEE 309
+PR K+ ++ VL A+G+ FS + S + I Q + E+ E
Sbjct: 281 VYLPRMKMEEKYNLTSVLMAMGITDVFSSSAN--LSGISSAESLKISQAVHAAHAEINEA 338
Query: 310 GTEXXXXXXXVITLKSLPRFDKIDFVADHPFIFMIREDATGVVL 353
G E + S+ +F ADHPF+F I+ AT VL
Sbjct: 339 GREVVGXAEAGVDAASVSE----EFRADHPFLFCIKHIATNAVL 378
>pdb|2H4P|A Chain A, Crystal Structure Of Wildtype Ment In The Cleaved
Conformation
Length = 394
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 125/269 (46%), Gaps = 28/269 (10%)
Query: 80 SANGGPR----LSVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDFQNKAVEVSREINF 135
+A PR L AN ++++++ + T+ Q YKA +V+F+ + +EIN
Sbjct: 128 TAFNKPRNNYSLRSANRIYVEKTYALLPTYLQLSKKYYKAEPQKVNFKTAPEQSRKEINT 187
Query: 136 WAEKETNGFIKEVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTKEYDFHLLNGGS-- 193
W EK+T IK +L V +++L+ NA+YFK W F + KT F L S
Sbjct: 188 WVEKQTESKIKNLLSSDDVKATTRLILVNAIYFKAEWEVKFQAEKTSIQPFRLSKNKSKP 247
Query: 194 IKVPFMTSKNKQLVTAFDGFKVLVLPYKQDELPAL-----EKKTGSQSGF--LKDHIPYE 246
+K+ +M L+ FK++ LPY + EL + K G+ +G L+ + YE
Sbjct: 248 VKMMYMRDTFPVLIMEKMNFKMIELPYVKRELSMFILLPDDIKDGT-TGLEQLERELTYE 306
Query: 247 MIE-----------VGDFRIPRFKISFGIEVSRVLKALGLVLSFSRKGG--RLTEMVDSH 293
+ + D +P+F + I++ L+ +G+ +F+ +T+ D
Sbjct: 307 RLSEWADSKMMTETLVDLHLPKFSLEDRIDLRDTLRNMGMTTAFTTNADFRGMTDKKDLA 366
Query: 294 VGVGIFQKSFIEVKEEGTEXXXXXXXVIT 322
+ I Q SF+ V E+GTE +I+
Sbjct: 367 ISKVIHQ-SFVAVDEKGTEAAAATAVIIS 394
>pdb|1UHG|A Chain A, Crystal Structure Of S-ovalbumin At 1.9 Angstrom
Resolution
pdb|1UHG|B Chain B, Crystal Structure Of S-ovalbumin At 1.9 Angstrom
Resolution
pdb|1UHG|C Chain C, Crystal Structure Of S-ovalbumin At 1.9 Angstrom
Resolution
pdb|1UHG|D Chain D, Crystal Structure Of S-ovalbumin At 1.9 Angstrom
Resolution
Length = 385
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 79/284 (27%), Positives = 124/284 (43%), Gaps = 24/284 (8%)
Query: 88 SVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDFQNKAVEVSREINFWAEKETNGFIKE 147
S+A+ ++ ++ + Q V +Y+ ++FQ A + IN W E +TNG I+
Sbjct: 100 SLASRLYAEERYPILPEYLQCVKELYRGGLEPINFQTAADQARELINSWVESQTNGIIRN 159
Query: 148 VLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTKEYDFHLLNGGSIKVPFMTSKN--KQ 205
VL P SVD + +V NA+ FKG+W +AF T+ F + S V M +
Sbjct: 160 VLQPXSVDSQTAMVLVNAIVFKGLWEKAFKDEDTQAMPFRVTEQESKPVQMMYQIGLFRV 219
Query: 206 LVTAFDGFKVLVLPYKQDELPALEKKTGSQSGF--LKDHIPYEMI------EVGDFR--- 254
A + K+L LP+ + L SG L+ I +E + V + R
Sbjct: 220 ASMASEKMKILELPFAXGTMSMLVLLPDEVSGLEQLESIINFEKLTEWTSSNVMEERKIK 279
Query: 255 --IPRFKISFGIEVSRVLKALGLVLSFSRKGGRLTEMVDSHVGVGIFQ---KSFIEVKEE 309
+PR K+ ++ VL A+G+ FS + S + I Q + E+ E
Sbjct: 280 VYLPRMKMEEKYNLTSVLMAMGITDVFSSSAN--LSGISSAEXLKISQAVHAAHAEINEA 337
Query: 310 GTEXXXXXXXVITLKSLPRFDKIDFVADHPFIFMIREDATGVVL 353
G E + S+ +F ADHPF+F I+ AT VL
Sbjct: 338 GREVVGXAEAGVDAASVSE----EFRADHPFLFCIKHIATNAVL 377
>pdb|9PAI|A Chain A, Cleaved Substrate Variant Of Plasminogen Activator
Inhibitor-1
Length = 346
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 74/246 (30%), Positives = 109/246 (44%), Gaps = 24/246 (9%)
Query: 87 LSVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDFQNKAVEVSR-EINFWAEKETNGFI 145
+S + +++ + L F +++++ QVDF VE +R IN W + T G I
Sbjct: 91 ISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQVDFSE--VERARFIINDWVKTHTKGMI 148
Query: 146 KEVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTKEYDFHLLNGGSIKVPFMTSKNKQ 205
+L G+VD ++LV NALYF G W F S T FH +G ++ VP M NK
Sbjct: 149 SNLLGKGAVDQLTRLVLVNALYFNGQWKTPFPDSSTHRRLFHKSDGSTVSVPMMAQTNKF 208
Query: 206 LVTAF---DG--FKVLVLPYKQDELP-----------ALEKKTGSQSGFLKDHIPYEMIE 249
T F DG + +L LPY D L L T S L H M
Sbjct: 209 NYTEFTTPDGHYYDILELPYHGDTLSMFIAAPYEKEVPLSALTNILSAQLISHWKGNMTR 268
Query: 250 VGDFRI-PRFKISFGIEVSRVLKALGLVLSFSRKGGRLTEMVDS---HVGVGIFQKSFIE 305
+ + P+F + +++ + L+ LG+ F + T + D HV + QK IE
Sbjct: 269 LPRLLVLPKFSLETEVDLRKPLENLGMTDMFRQFQADFTSLSDQEPLHVAQAL-QKVKIE 327
Query: 306 VKEEGT 311
V E GT
Sbjct: 328 VNESGT 333
>pdb|3OZQ|A Chain A, Crystal Structure Of Serpin48, Which Is A Highly Specific
Serpin In The Insect Tenebrio Molitor
Length = 376
Score = 92.4 bits (228), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 92/340 (27%), Positives = 154/340 (45%), Gaps = 39/340 (11%)
Query: 30 SPLSIHVLLSMIAAGSKGPTXXXXXXXXXXXXNEQQNFASELVAIVFADGSANGGPRLSV 89
SP S LL++ +G +G T + ++ A V V + + N L
Sbjct: 37 SPFSAATLLALAQSGCRGDTAEEIRQVLHFVGDREK--AEGAVKEVLSKLT-NEEYTLHT 93
Query: 90 ANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDFQNKAVEVSREINFWAEKETNGFIKEVL 149
AN +++ + S + F++ +Y A S VDF K + ++ +N W E++T I+ ++
Sbjct: 94 ANKIYVKTNFSVREEFQKIAVEVYGAQSENVDFSEKN-DAAKLMNAWVEEQTQHKIQNLV 152
Query: 150 PPGSVDDSSKLVFANALYFKGVWNEAFDSSKTKEYDFHLLNGGSIKVPFMTSKNKQLVTA 209
P +++ +++V NALYF W F T++ DFH ++V M ++Q
Sbjct: 153 DPEILNNLTRVVLINALYFNAKWLVPFPPFHTRKSDFHKSAKEVVQVDTMYL-DEQYFNY 211
Query: 210 FDGF----KVLVLPYKQ------------DELPALEKKTGSQSGFLKDHIPYEMIEVGDF 253
++ K+L LP+K + L +LE K + FL ++ +++ V
Sbjct: 212 YECHHLDAKLLELPFKGGASLTIVLSNQIEGLVSLESKI--KRSFLPHNLTKQLVNVA-- 267
Query: 254 RIPRFKISFGIE------VSRVLKALGLVLSFSRKGGRLTEMVDSHVGVGIFQKSFIEVK 307
+P+FKI ++ V KA G S G ++V S+ I QKSFI+V
Sbjct: 268 -LPKFKIESTVDFKKVLKKLGVKKAFGDEADLSGIAGEKGDLVISN----IVQKSFIDVS 322
Query: 308 EEGTEXXXXXXXVITLK--SLPRFDKIDFVADHPFIFMIR 345
EEG E + L +LP K F+ DHPFIF I+
Sbjct: 323 EEGVEAAAATYIPVILPEMALPDSPK-QFIVDHPFIFYIK 361
>pdb|2VDX|A Chain A, Crystal Structure Of The Reactive Loop Cleaved
Corticosteroid Binding Globulin
pdb|2VDX|B Chain B, Crystal Structure Of The Reactive Loop Cleaved
Corticosteroid Binding Globulin
pdb|2VDY|A Chain A, Crystal Structure Of The Reactive Loop Cleaved
Corticosteroid Binding Globulin Complexed With Cortisol
pdb|2VDY|B Chain B, Crystal Structure Of The Reactive Loop Cleaved
Corticosteroid Binding Globulin Complexed With Cortisol
Length = 373
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 90/368 (24%), Positives = 167/368 (45%), Gaps = 53/368 (14%)
Query: 9 SEQTDITLSLSKHIKAPTSSS----SPLSIHVLLSMIAAGSKGPTXXXXXXXXXXXXNEQ 64
S D SL KH+ A + SP+SI + L+M++ G+ G T E+
Sbjct: 9 SANVDFAFSLYKHLVALSPKKNIFISPVSISMALAMLSLGTCGHTRAQLLQGLGFNLTER 68
Query: 65 ------QNFASELVAIVFADGSANGGPRLSVANGVWIDQSLSFKNTFKQTVDNIYKASSH 118
Q F + + +FA ++ +++ N +++D SL +F + + Y++
Sbjct: 69 SETEIHQGF--QHLHQLFA--KSDTSLEMTMGNALFLDGSLELLESFSADIKHYYESEVL 124
Query: 119 QVDFQNKAVEVSREINFWAEKETNGFIKEVLPPGSVDDSSKLVFANALYFKGVWNEAFDS 178
++FQ+ A SR+IN + + +T G I ++ +D + LV N ++FKG W + FD
Sbjct: 125 AMNFQDWAT-ASRQINSYVKNKTQGKIVDLF--SGLDSPAILVLVNYIFFKGTWTQPFDL 181
Query: 179 SKTKEYDFHLLNGGSIKVPFMTSKNK--------------QLVTAFDGFKVLVLPYK--- 221
+ T+E +F++ +KVP M + Q+ +G +LP K
Sbjct: 182 ASTREENFYVDETTVVKVPMMLQSSTISYLHDSELPCQLVQMNYVGNGTVFFILPDKGKM 241
Query: 222 QDELPALEKKTGSQ--SGFLKDHIPYEMIEVGDFRIPRFKISFGIEVSRVLKALGLVLSF 279
+ AL + T ++ +G + D IP+ IS ++ VL+ +G+ F
Sbjct: 242 NTVIAALSRDTINRWSAGLTSSQV--------DLYIPKVTISGVYDLGDVLEEMGIADLF 293
Query: 280 SRKGG--RLTEMVDSHV-GVGIFQKSFIEVKEEGTEXXXXXXXVITLKSLPRFDKIDFVA 336
+ + R+T+ D+ + + K+ +++ EEGTE + L+++PR I
Sbjct: 294 TTQANFSRITQ--DAQLKSSKVVHKAVLQLNEEGTE----AAGAMFLEAIPRSKPIILRF 347
Query: 337 DHPFIFMI 344
+ PFI MI
Sbjct: 348 NQPFIIMI 355
>pdb|3NDA|A Chain A, Crystal Structure Of Serpin From Tick Ixodes Ricinus
pdb|3NDA|B Chain B, Crystal Structure Of Serpin From Tick Ixodes Ricinus
Length = 377
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 92/339 (27%), Positives = 152/339 (44%), Gaps = 25/339 (7%)
Query: 30 SPLSIHVLLSMIAAGSKGPTXXXXXXXXXXXXNEQQNFASELVAIVFADGSANGGPR--- 86
SP S+ + M AG++G T + + A L A P
Sbjct: 33 SPYSVSTAMGMAFAGARGQTQQELSQGLGFSDVDLTD-AGVLDAYTHHTERLKSTPSNST 91
Query: 87 LSVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDFQNKAVEVSREINFWAEKETNGFIK 146
L VAN I ++L+ N+++ + + + A H+VDF + +N W +++T+ I+
Sbjct: 92 LDVANAAAIQRTLALLNSYESALQSSFGAELHKVDFAGEPQAAVDFVNNWVKRKTHDKIE 151
Query: 147 EVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTKEYDFHLLNGG--SIKVPFMTSKNK 204
++ +D + LV NA+YFKG WN AF T++ F NGG ++V M + +
Sbjct: 152 KLFNE-PLDPDTLLVLLNAIYFKGEWNTAFVKEHTEKRQF--FNGGVTPVEVDTMRLEAR 208
Query: 205 QLVTAFDGFKVLV--LPYKQDE--LPALEKKTGSQSGFLKDHIPYEMIE--VGDFR---- 254
FD +V V LPY+ + + L K + LK ++ + + + D R
Sbjct: 209 IKYRFFDDLQVEVVELPYRGLDYTMAILLPKENTGVEGLKQNLTIDRFQNYLSDLRERKI 268
Query: 255 ---IPRFKISFGIEVSRVLKALGLVLSFSRKGGRLTEMVDSHVGV-GIFQKSFIEVKEEG 310
+P+FK+ + L++LG+ F G L+ + D + V + K+ +EV EEG
Sbjct: 269 TVLLPKFKLETKYSLKAPLQSLGIKQIFE-SGADLSGINDGSLRVSAVEHKAVVEVNEEG 327
Query: 311 TEXXXXXXXVITLKSLPRFDKIDFVADHPFIFMIREDAT 349
T VI SL + + F DHPF+F IR T
Sbjct: 328 TVAAATTGVVIVPYSLGP-EPVVFRVDHPFLFFIRNTRT 365
>pdb|3H5C|A Chain A, X-Ray Structure Of Protein Z-Protein Z Inhibitor Complex
Length = 423
Score = 88.6 bits (218), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 80/285 (28%), Positives = 132/285 (46%), Gaps = 25/285 (8%)
Query: 87 LSVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDFQNKAVEVSREINFWAEKETNGFIK 146
L+ + +I + K TF + ++F+N A + R +N + KET G I
Sbjct: 139 LTQGSFAFIHKDFDVKETFFNLSKRYFDTECVPMNFRN-ASQAKRLMNHYINKETRGKIP 197
Query: 147 EVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTKEYDFHLLNGGSIKVPFMTSKNKQL 206
++ ++ +KL+ + + FKG W FD T+ FHL +IKVP M K
Sbjct: 198 KLF--DEINPETKLILVDYILFKGKWLTPFDPVFTEVDTFHLDKYKTIKVPMMYGAGKFA 255
Query: 207 VTAFDGFK--VLVLPYKQDE--LPALEKKTGSQSGFLKDHIPYEMIEVG---------DF 253
T F+ VL LPY+ + L L +K G L+D++ +++E +
Sbjct: 256 STFDKNFRCHVLKLPYQGNATMLVVLMEKMGDHLA-LEDYLTTDLVETWLRNMKTRNMEV 314
Query: 254 RIPRFKISFGIEVSRVLKALGLVLSFSRKGGRLTEMVDSHVGVG---IFQKSFIEVKEEG 310
P+FK+ E+ +L+ +G+ FS L+E+ + + + Q++ IEV E G
Sbjct: 315 FFPKFKLDQKYEMHELLRQMGIRRIFS-PFADLSELSATGRNLQVSRVLQRTVIEVDERG 373
Query: 311 TEXXXXXXXVITLKSLPRFDKIDFVADHPFIFMIREDATGVVLSL 355
TE IT S+P K+ D PF FMI E+ +G++L L
Sbjct: 374 TEAVAGILSEITAYSMPPVIKV----DRPFHFMIYEETSGMLLFL 414
>pdb|3F1S|A Chain A, Crystal Structure Of Protein Z Complexed With Protein
Z-Dependent Inhibitor
Length = 385
Score = 87.8 bits (216), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 80/285 (28%), Positives = 132/285 (46%), Gaps = 25/285 (8%)
Query: 87 LSVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDFQNKAVEVSREINFWAEKETNGFIK 146
L+ + +I + K TF + ++F+N A + R +N + KET G I
Sbjct: 101 LTQGSFAFIHKDFDVKETFFNLSKRYFDTECVPMNFRN-ASQAKRLMNHYINKETRGKIP 159
Query: 147 EVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTKEYDFHLLNGGSIKVPFMTSKNKQL 206
++ ++ +KL+ + + FKG W FD T+ FHL +IKVP M K
Sbjct: 160 KLF--DEINPETKLILVDYILFKGKWLTPFDPVFTEVDTFHLDKYKTIKVPMMYGAGKFA 217
Query: 207 VTAFDGFK--VLVLPYKQDE--LPALEKKTGSQSGFLKDHIPYEMIEVG---------DF 253
T F+ VL LPY+ + L L +K G L+D++ +++E +
Sbjct: 218 STFDKNFRCHVLKLPYQGNATMLVVLMEKMGDHLA-LEDYLTTDLVETWLRNMKTRNMEV 276
Query: 254 RIPRFKISFGIEVSRVLKALGLVLSFSRKGGRLTEMVDSHVGVG---IFQKSFIEVKEEG 310
P+FK+ E+ +L+ +G+ FS L+E+ + + + Q++ IEV E G
Sbjct: 277 FFPKFKLDQKYEMHELLRQMGIRRIFS-PFADLSELSATGRNLQVSRVLQRTVIEVDERG 335
Query: 311 TEXXXXXXXVITLKSLPRFDKIDFVADHPFIFMIREDATGVVLSL 355
TE IT S+P K+ D PF FMI E+ +G++L L
Sbjct: 336 TEAVAGILSEITAYSMPPVIKV----DRPFHFMIYEETSGMLLFL 376
>pdb|1JJO|C Chain C, Crystal Structure Of Mouse Neuroserpin (Cleaved Form)
pdb|1JJO|D Chain D, Crystal Structure Of Mouse Neuroserpin (Cleaved Form)
Length = 261
Score = 87.8 bits (216), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 113/250 (45%), Gaps = 29/250 (11%)
Query: 87 LSVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDFQNKAVEVSREINFWAEKETNGFIK 146
+ +AN +++ F Q + + A + VDF ++ V V+ IN W E TN +K
Sbjct: 6 MKLANSLFVQNGFHVNEEFLQMLKMYFNAEVNHVDF-SQNVAVANSINKWVENYTNSLLK 64
Query: 147 EVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTKEYDFHLLNGGSIKVPFMTSKNKQL 206
+++ P D + L NA+YFKG W F T+ + F + +++P M + +
Sbjct: 65 DLVSPEDFDGVTNLALINAVYFKGNWKSQFRPENTRTFSFTKDDESEVQIPMMYQQGEFY 124
Query: 207 VTAF-DG-------FKVLVLPYKQDELPAL------EKKTGSQSGFLK--------DHIP 244
F DG ++VL +PY+ DE+ + E + LK + +
Sbjct: 125 YGEFSDGSNEAGGIYQVLEIPYEGDEISMMLALSRQEVPLATLEPLLKAQLIEEWANSVK 184
Query: 245 YEMIEVGDFRIPRFKISFGIEVSRVLKALGLVLSFSRKGGRLTEMVDSH--VGVGIFQKS 302
+ +EV +PRF + I++ +LKALG+ F K LT M D KS
Sbjct: 185 KQKVEV---YLPRFTVEQEIDLKDILKALGVTEIFI-KDANLTAMSDKKELFLSKAVHKS 240
Query: 303 FIEVKEEGTE 312
IEV EEG+E
Sbjct: 241 CIEVNEEGSE 250
>pdb|1XU8|A Chain A, The 2.8 A Structure Of A Tumour Suppressing Serpin
pdb|1XU8|B Chain B, The 2.8 A Structure Of A Tumour Suppressing Serpin
Length = 380
Score = 85.5 bits (210), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 77/289 (26%), Positives = 128/289 (44%), Gaps = 29/289 (10%)
Query: 87 LSVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDFQNKAVEVSREINFWAEKETNGFIK 146
L + +++D+SL+ F + Y VDF++K E +IN + T+G +
Sbjct: 91 LKLIKRLYVDKSLNLSTEFISSTKRPYAKELETVDFKDKLEETKGQINNSIKDLTDGHFE 150
Query: 147 EVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTKEYDFHLLNGGSIKVPFMTSKNKQL 206
+L SV+D +K++ NA YF G W + F S+TKE F L + V M +
Sbjct: 151 NILADNSVNDQTKILVVNAAYFVGKWMKKFPESETKECPFRLNKTDTKPVQMMNMEATFC 210
Query: 207 VTAFDGF--KVLVLPYK--------------QDELPALEK--KTGSQSGFLKDHIPYEMI 248
+ D K++ LP++ +DE LEK K + + P M
Sbjct: 211 MGNIDSINCKIIELPFQNKHLSMFILLPKDVEDESTGLEKIEKQLNSESLSQWTNPSTMA 270
Query: 249 EVG-DFRIPRFKISFGIEVSRVLKALGLVLSFSRKGGRLTEMVDSHVGVG---IFQKSFI 304
IP+FK+ I+ L+ LGL FS + M ++ GV + K +
Sbjct: 271 NAKVKLSIPKFKVEKMIDPKACLENLGLKHIFSEDTSDFSGMSETK-GVALSNVIHKVCL 329
Query: 305 EVKEEGTEXXXXXXXVITLKSLPRFDKIDFVADHPFIFMIREDATGVVL 353
E+ E+G + V + L D+++ ADHPFI++IR + T ++
Sbjct: 330 EITEDGGD----SIEVPGARILQHKDELN--ADHPFIYIIRHNKTRNII 372
>pdb|1WZ9|A Chain A, The 2.1 A Structure Of A Tumour Suppressing Serpin
pdb|1WZ9|B Chain B, The 2.1 A Structure Of A Tumour Suppressing Serpin
Length = 375
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 77/289 (26%), Positives = 128/289 (44%), Gaps = 29/289 (10%)
Query: 87 LSVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDFQNKAVEVSREINFWAEKETNGFIK 146
L + +++D+SL+ F + Y VDF++K E +IN + T+G +
Sbjct: 86 LKLIKRLYVDKSLNLSTEFISSTKRPYAKELETVDFKDKLEETKGQINNSIKDLTDGHFE 145
Query: 147 EVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTKEYDFHLLNGGSIKVPFMTSKNKQL 206
+L SV+D +K++ NA YF G W + F S+TKE F L + V M +
Sbjct: 146 NILADNSVNDQTKILVVNAAYFVGKWMKKFPESETKEXPFRLNKTDTKPVQMMNMEATFX 205
Query: 207 VTAFDGF--KVLVLPYK--------------QDELPALEK--KTGSQSGFLKDHIPYEMI 248
+ D K++ LP++ +DE LEK K + + P M
Sbjct: 206 MGNIDSINXKIIELPFQNKHLSMFILLPKDVEDESTGLEKIEKQLNSESLSQWTNPSTMA 265
Query: 249 EVG-DFRIPRFKISFGIEVSRVLKALGLVLSFSRKGGRLTEMVDSHVGVG---IFQKSFI 304
IP+FK+ I+ L+ LGL FS + M ++ GV + K +
Sbjct: 266 NAKVKLSIPKFKVEKMIDPKACLENLGLKHIFSEDTSDFSGMSETK-GVALSNVIHKVXL 324
Query: 305 EVKEEGTEXXXXXXXVITLKSLPRFDKIDFVADHPFIFMIREDATGVVL 353
E+ E+G + V + L D+++ ADHPFI++IR + T ++
Sbjct: 325 EITEDGGD----SIEVPGARILQHKDELN--ADHPFIYIIRHNKTRNII 367
>pdb|2OL2|A Chain A, High Resolution Structure Of Native Pci In Space Group P21
pdb|2OL2|B Chain B, High Resolution Structure Of Native Pci In Space Group P21
pdb|3B9F|I Chain I, 1.6 A Structure Of The Pci-Thrombin-Heparin Complex
Length = 395
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 80/356 (22%), Positives = 164/356 (46%), Gaps = 26/356 (7%)
Query: 9 SEQTDITLSLSKHIKAPTSSS----SPLSIHVLLSMIAAGSKGPTXXXXXXXXXXXXNEQ 64
S + D T L + + + S SP+SI + L+M++ G+ T N Q
Sbjct: 32 SSRRDFTFDLYRALASAAPSQNIFFSPVSISMSLAMLSLGAGSSTKMQILEGLGL--NLQ 89
Query: 65 QNFASEL----VAIVFADGSANGGPRLSVANGVWIDQSLSFKNTFKQTVDNIYKASSHQV 120
++ EL ++ G +LS+ N ++ D + ++TF + +Y A +
Sbjct: 90 KSSEKELHRGFQQLLQELNQPRDGFQLSLGNALFTDLVVDLQDTFVSAMKTLYLADTFPT 149
Query: 121 DFQNKAVEVSREINFWAEKETNGFIKEVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSK 180
+F++ A + ++IN + K+T G I ++L ++D ++ ++ N ++FK W +F+
Sbjct: 150 NFRDSAGAM-KQINDYVAKQTKGKIVDLLK--NLDSNAVVIMVNYIFFKAKWETSFNHKG 206
Query: 181 TKEYDFHLLNGGSIKVPFMTSKNK--QLVTAFDGFKVLVLPYKQDE-----LPALEKKTG 233
T+E DF++ + ++VP M+ +++ L+ +V+ +PY+ + LP+ K
Sbjct: 207 TQEQDFYVTSETVVRVPMMSREDQYHYLLDRNLSCRVVGVPYQGNATALFILPSEGKMQQ 266
Query: 234 SQSGF----LKDHIPYEMIEVGDFRIPRFKISFGIEVSRVLKALGLVLSFSRKGGRLTEM 289
++G L+ + + +P+F I ++ +VL +LG+ F+
Sbjct: 267 VENGLSEKTLRKWLKMFKKRQLELYLPKFSIEGSYQLEKVLPSLGISNVFTSHADLSGIS 326
Query: 290 VDSHVGVG-IFQKSFIEVKEEGTEXXXXXXXVITLKSLPRFDKIDFVADHPFIFMI 344
S++ V + K+ +EV E GT + T +S R + V + PF+ I
Sbjct: 327 NHSNIQVSEMVHKAVVEVDESGTRAAAATGTIFTFRS-ARLNSQRLVFNRPFLMFI 381
>pdb|4IF8|A Chain A, Structure Of Vaspin
pdb|4IF8|B Chain B, Structure Of Vaspin
Length = 414
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 83/342 (24%), Positives = 144/342 (42%), Gaps = 27/342 (7%)
Query: 30 SPLSIHVLLSMIAAGSKGPTXXXXXXXXXXXXNEQQNFASELVAIVFADGSANGGPRLSV 89
SPLSI SM+ G++ T +++ I+ +LS+
Sbjct: 75 SPLSISTAFSMLCLGAQDSTLDEIKQGFNFRKMPEKDLHEGFHYIIHELTQKTQDLKLSI 134
Query: 90 ANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDFQNKAVEVSREINFWAEKETNGFIKEVL 149
N ++IDQ L + F + N Y A + +FQN + ++IN + ++T+G I ++
Sbjct: 135 GNTLFIDQRLQPQRKFLEDAKNFYSAETILTNFQNLEM-AQKQINDFISQKTHGKINNLI 193
Query: 150 PPGSVDDSSKLVFANALYFKGVWNEAFDSSKTKEYDFHLLNGGSIKVPFMTSKNKQLVTA 209
++D + ++ AN ++F+ W FD + TKE DF L S+KVP M V
Sbjct: 194 E--NIDPGTVMLLANYIFFRARWKHEFDPNVTKEEDFFLEKNSSVKVPMMFRSGIYQVGY 251
Query: 210 FDGFKVLVL--PYKQD-----------ELPALEKKTGSQSGFLKDHIPYEMIEVGDFRIP 256
D +L PY+++ +L LEK G Q V D +P
Sbjct: 252 DDKLSCTILEIPYQKNITAIFILPDEGKLKHLEK--GLQVDTFSRWKTLLSRRVVDVSVP 309
Query: 257 RFKISFGIEVSRVLKALGLVLSFSRKGGRLTEMVDSH---VGVGIFQKSFIEVKEEGTEX 313
R ++ ++ + L +G+ F G LT++ VG + K+ +++ E GTE
Sbjct: 310 RLHMTGTFDLKKTLSYIGVSKIFEEHGD-LTKIAPHRSLKVGEAV-HKAELKMDERGTEG 367
Query: 314 XXXXXXVITLKSLPRFDKIDFVADHPFIFMIREDATGVVLSL 355
++LP + D P++ +I + VL L
Sbjct: 368 AAGTGA----QTLPMETPLVVKIDKPYLLLIYSEKIPSVLFL 405
>pdb|2HI9|A Chain A, Crystal Structure Of Human Native Protein C Inhibitor
pdb|2HI9|B Chain B, Crystal Structure Of Human Native Protein C Inhibitor
pdb|2HI9|C Chain C, Crystal Structure Of Human Native Protein C Inhibitor
Length = 363
Score = 81.6 bits (200), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 79/354 (22%), Positives = 163/354 (46%), Gaps = 26/354 (7%)
Query: 11 QTDITLSLSKHIKAPTSSS----SPLSIHVLLSMIAAGSKGPTXXXXXXXXXXXXNEQQN 66
+ D T L + + + S SP+SI + L+M++ G+ T N Q++
Sbjct: 2 RRDFTFDLYRALASAAPSQNIFFSPVSISMSLAMLSLGAGSSTKMQILEGLGL--NLQKS 59
Query: 67 FASEL----VAIVFADGSANGGPRLSVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDF 122
EL ++ G +LS+ N ++ D + ++TF + +Y A + +F
Sbjct: 60 SEKELHRGFQQLLQELNQPRDGFQLSLGNALFTDLVVDLQDTFVSAMKTLYLADTFPTNF 119
Query: 123 QNKAVEVSREINFWAEKETNGFIKEVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTK 182
++ A + ++IN + K+T G I ++L ++D ++ ++ N ++FK W +F+ T+
Sbjct: 120 RDSAGAM-KQINDYVAKQTKGKIVDLLK--NLDSNAVVIMVNYIFFKAKWETSFNHKGTQ 176
Query: 183 EYDFHLLNGGSIKVPFMTSKNK--QLVTAFDGFKVLVLPYKQDE-----LPALEKKTGSQ 235
E DF++ + ++VP M+ +++ L+ +V+ +PY+ + LP+ K +
Sbjct: 177 EQDFYVTSETVVRVPMMSREDQYHYLLDRNLSCRVVGVPYQGNATALFILPSEGKMQQVE 236
Query: 236 SGF----LKDHIPYEMIEVGDFRIPRFKISFGIEVSRVLKALGLVLSFSRKGGRLTEMVD 291
+G L+ + + +P+F I ++ +VL +LG+ F+
Sbjct: 237 NGLSEKTLRKWLKMFKKRQLELYLPKFSIEGSYQLEKVLPSLGISNVFTSHADLSGISNH 296
Query: 292 SHVGVG-IFQKSFIEVKEEGTEXXXXXXXVITLKSLPRFDKIDFVADHPFIFMI 344
S++ V + K+ +EV E GT + T +S R + V + PF+ I
Sbjct: 297 SNIQVSEMVHKAVVEVDESGTRAAAATGTIFTFRS-ARLNSQRLVFNRPFLMFI 349
>pdb|1XQG|A Chain A, 3.10 A Crystal Structure Of Maspin, Space Group P 4 21 2
pdb|1XQG|B Chain B, 3.10 A Crystal Structure Of Maspin, Space Group P 4 21 2
pdb|1XQJ|A Chain A, 3.10 A Crystal Structure Of Maspin, Space Group I 4 2 2
Length = 389
Score = 81.3 bits (199), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 78/295 (26%), Positives = 130/295 (44%), Gaps = 29/295 (9%)
Query: 87 LSVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDFQNKAVEVSREINFWAEKETNGFIK 146
L + +++D+SL+ F + Y VDF++K E +IN + T+G +
Sbjct: 100 LKLIKRLYVDKSLNLSTEFISSTKRPYAKELETVDFKDKLEETKGQINNSIKDLTDGHFE 159
Query: 147 EVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTKEYDFHLLNGGSIKVPFMTSKNKQL 206
+L SV+D +K++ NA YF G W + F S+TKE F + + V M +
Sbjct: 160 NILADNSVNDQTKILVVNAAYFVGKWMKKFSESETKESPFRVNKTDTKPVQMMNMEATFS 219
Query: 207 VTAFDGF--KVLVLPYK--------------QDELPALEK--KTGSQSGFLKDHIPYEMI 248
+ D K++ LP++ +DE LEK K + + P M
Sbjct: 220 MGNIDSINSKIIELPFQNKHLSMFILLPKDVEDESTGLEKIEKQLNSESLSQWTNPSTMA 279
Query: 249 EVG-DFRIPRFKISFGIEVSRVLKALGLVLSFSRKGGRLTEMVDSHVGVG---IFQKSFI 304
IP+FK+ I+ L+ LGL FS + M ++ GV + K +
Sbjct: 280 NAKVKLSIPKFKVEKMIDPKASLENLGLKHIFSEDTSDFSGMSETK-GVALSNVIHKVSL 338
Query: 305 EVKEEGTEXXXXXXXVITLKSLPRFDKIDFVADHPFIFMIREDATGVVLSLVMFS 359
E+ E+G + V + L D+++ ADHPFI++IR + T ++ FS
Sbjct: 339 EITEDGGD----SIEVPGARILQHKDELN--ADHPFIYIIRHNKTRNIIFFGKFS 387
>pdb|1JMO|A Chain A, Crystal Structure Of The Heparin Cofactor Ii-S195a
Thrombin Complex
Length = 480
Score = 81.3 bits (199), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 85/350 (24%), Positives = 143/350 (40%), Gaps = 41/350 (11%)
Query: 30 SPLSIHVLLSMIAAGSKGPTXXXX----------XXXXXXXXNEQQNFASELVAIVFADG 79
+P+ I + MI+ G KG T N +L +F
Sbjct: 135 APVGISTAMGMISLGLKGETHEQVHSILHFKDFVNASSKYEITTIHNLFRKLTHRLF--- 191
Query: 80 SANGGPRLSVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDFQNKAVEVSREINFWAEK 139
N G L N ++I + FK V Y A + DF + A +S+ N K
Sbjct: 192 RRNFGYTLRSVNDLYIQKQFPILLDFKTKVREYYFAEAQIADFSDPAF-ISKTNNHIM-K 249
Query: 140 ETNGFIKEVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTKEYDFHLLNGGSIKVPFM 199
T G IK+ L ++D +++++ N +YFKG W F T ++F L +KV M
Sbjct: 250 LTKGLIKDALE--NIDPATQMMILNCIYFKGSWVNKFPVEMTHNHNFRLNEREVVKVSMM 307
Query: 200 TSKNKQL-------------VTAFDGFKVL-VLPYKQDELPALEKKTGSQSGFLKDHIPY 245
+K L + G +L V+P+K + LE + + + +
Sbjct: 308 QTKGNFLAANDQELDCDILQLEYVGGISMLIVVPHKMSGMKTLEAQLTPR---VVERWQK 364
Query: 246 EMI-EVGDFRIPRFKISFGIEVSRVLKALGLVLSFSRKGGRLTEMVDSHVGVGIFQ-KSF 303
M + +P+FK+ + LK +G+ + F K G + + D + + +F+ +
Sbjct: 365 SMTNRTREVLLPKFKLEKNYNLVESLKLMGIRMLFD-KNGNMAGISDQRIAIDLFKHQGT 423
Query: 304 IEVKEEGTEXXXXXXXVITLKSLPRFDKIDFVADHPFIFMIREDATGVVL 353
I V EEGT+ V T+ +P ++ F D PF+F+I E T +L
Sbjct: 424 ITVNEEGTQ----ATTVTTVGFMPLSTQVRFTVDRPFLFLIYEHRTSCLL 469
>pdb|4AJT|A Chain A, The Cystal Structure Of Mouse Protein-Z Dependent Protease
Inhibitor(Mzpi)
Length = 427
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 132/292 (45%), Gaps = 25/292 (8%)
Query: 80 SANGGPRLSVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDFQNKAVEVSREINFWAEK 139
S+N LS + +I + K T+ + ++FQN + + IN K
Sbjct: 136 SSNRDLGLSQGSFAFIHKDFDIKETYFNLSKKYFDIEYVSINFQNSS-QARGLINHCIVK 194
Query: 140 ETNGFIKEVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTKEYDFHLLNGGSIKVPFM 199
ET G I ++ ++ +KL+ + + FKG W FD S T+ FHL +IKVP M
Sbjct: 195 ETEGKIPKLF--DEINPETKLILVDYVLFKGKWLTPFDPSFTEADTFHLDKYRAIKVPMM 252
Query: 200 TSKNKQLVTAFDG---FKVLVLPYKQDE--LPALEKKTGSQSGFLKDHIPYEMIEVG--- 251
+ + FD +L LPY+ + L L +KTG L+D++ +++E
Sbjct: 253 Y-REGNFTSTFDKKFRCHILKLPYQGNATMLVVLMEKTGDYLA-LEDYLTVDLVETWLQN 310
Query: 252 ------DFRIPRFKISFGIEVSRVLKALGLVLSFSRKG--GRLTEMVDSHVGVGIFQKSF 303
+ P+FK++ E+ +LK +G+ FS L+ M + + Q+S
Sbjct: 311 MKTRKMEVFFPKFKLNQRYEMHELLKQMGIRRLFSTSADLSELSAMARNLQVSRVLQQSV 370
Query: 304 IEVKEEGTEXXXXXXXVITLKSLPRFDKIDFVADHPFIFMIREDATGVVLSL 355
+EV E GTE I S+P K+ + PF F+I E+ + ++L L
Sbjct: 371 LEVDERGTEAVSGTLSEIIAYSMPPAIKV----NRPFHFIIYEEMSRMLLFL 418
>pdb|1JMJ|A Chain A, Crystal Structure Of Native Heparin Cofactor Ii
pdb|1JMJ|B Chain B, Crystal Structure Of Native Heparin Cofactor Ii
Length = 480
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 88/350 (25%), Positives = 144/350 (41%), Gaps = 41/350 (11%)
Query: 30 SPLSIHVLLSMIAAGSKGPTXXXX----------XXXXXXXXNEQQNFASELVAIVFADG 79
+P+ I + MI+ G KG T N +L +F
Sbjct: 135 APVGISTAMGMISLGLKGETHEQVHSILHFKDFVNASSKYEITTIHNLFRKLTHRLF--- 191
Query: 80 SANGGPRLSVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDFQNKAVEVSREINFWAEK 139
N G L N ++I + FK V Y A + DF + A +S+ N K
Sbjct: 192 RRNFGYTLRSVNDLYIQKQFPILLDFKTKVREYYFAEAQIADFSDPAF-ISKTNNHIM-K 249
Query: 140 ETNGFIKEVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTKEYDFHLLNGGSIKVPFM 199
T G IK+ L ++D +++++ N +YFKG W F T ++F L +KV M
Sbjct: 250 LTKGLIKDALE--NIDPATQMMILNCIYFKGSWVNKFPVEMTHNHNFRLNEREVVKVSMM 307
Query: 200 TSK------NKQLVTA-------FDGFKVL-VLPYKQDELPALEKK-TGSQSGFLKDHIP 244
+K N Q + G +L V+P+K + LE + T + +
Sbjct: 308 QTKGNFLAANDQELDCDILQLEYVGGISMLIVVPHKMSGMKTLEAQLTPRVVERWQKSMT 367
Query: 245 YEMIEVGDFRIPRFKISFGIEVSRVLKALGLVLSFSRKGGRLTEMVDSHVGVGIFQ-KSF 303
EV +P+FK+ + LK +G+ + F K G + + D + + +F+ +
Sbjct: 368 NRTREV---LLPKFKLEKNYNLVESLKLMGIRMLFD-KNGNMAGISDQRIAIDLFKHQGT 423
Query: 304 IEVKEEGTEXXXXXXXVITLKSLPRFDKIDFVADHPFIFMIREDATGVVL 353
I V EEGT+ V T+ +P ++ F D PF+F+I E T +L
Sbjct: 424 ITVNEEGTQ----ATTVTTVGFMPLSTQVRFTVDRPFLFLIYEHRTSCLL 469
>pdb|3DLW|A Chain A, Antichymotrypsin
Length = 411
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 87/379 (22%), Positives = 155/379 (40%), Gaps = 69/379 (18%)
Query: 9 SEQTDITLSLSKHI--KAPTSSS--SPLSIHVLLSMIAAGSKGPTXXXXXXXXXXXXNE- 63
S D SL K + KAP + SPLSI L+ ++ G+ T E
Sbjct: 39 SANVDFAFSLYKQLVLKAPDKNVIFSPLSISTALAFLSLGAHNTTLTEILKGLKFNLTET 98
Query: 64 -----QQNFASELVAIVFADGSANGGPRLSVANGVWIDQSLSFKNTFKQTVDNIYKASSH 118
Q+F L + ++ +LS+ N +++ + LS + F + +Y + +
Sbjct: 99 SEAEIHQSFQHLLRTL----NQSSDELQLSMGNAMFVKEQLSLLDRFTEDAKRLYGSEAF 154
Query: 119 QVDFQNKAVEVSREINFWAEKETNGFIKEVLPPGSVDDSSKLVFANALYFKGVWNEAFDS 178
DFQ+ A + IN + + T G I +++ +D + +V N ++FK W FD
Sbjct: 155 ATDFQDSAA-AKKLINDYVKNGTRGKITDLI--KDLDSQTMMVLVNYIFFKAKWEMPFDP 211
Query: 179 SKTKEYDFHLLNGGSIKVPFMTSKNKQLVTAFDGFKVLVLPYKQDE-------------- 224
T + F+L + VP M+ + L +PY +DE
Sbjct: 212 QDTHQSRFYLSKKKWVMVPMMSLHH------------LTIPYFRDEELSCTVVELKYTGN 259
Query: 225 ------LPALEKKTGSQSGFLKDHI-----PYEMIEVGDFRIPRFKISFGIEVSRVLKAL 273
LP +K ++ L + + E E+G+ +P+F IS ++ +L L
Sbjct: 260 ASALFILPDQDKMEEVEAMLLPETLKRWRDSLEFREIGELYLPKFSISRDYNLNDILLQL 319
Query: 274 GLVLSFSRKGGRLTEMVDSHVGVG-IFQKSFIEVKEEGTEXXXXXXXVITL-------KS 325
G+ +F+ K ++ V + K+ ++V EEGTE ITL ++
Sbjct: 320 GIEEAFTSKADLSGITGARNLAVSQVVHKAVLDVFEEGTEASGTTAVKITLLSALVETRT 379
Query: 326 LPRFDKIDFVADHPFIFMI 344
+ RF++ PF+ +I
Sbjct: 380 ITRFNR-------PFLMII 391
>pdb|2ACH|A Chain A, Crystal Structure Of Cleaved Human Alpha1-antichymotrypsin
At 2.7 Angstroms Resolution And Its Comparison With
Other Serpins
Length = 360
Score = 77.8 bits (190), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 82/351 (23%), Positives = 143/351 (40%), Gaps = 55/351 (15%)
Query: 9 SEQTDITLSLSKHI--KAPTSSS--SPLSIHVLLSMIAAGSKGPTXXXXXXXXXXXXNE- 63
S D SL K + KAP + SPLSI L+ ++ G+ T E
Sbjct: 28 SANVDFAFSLYKQLVLKAPDKNVIFSPLSISTALAFLSLGAHNTTLTEILKGLKFNLTET 87
Query: 64 -----QQNFASELVAIVFADGSANGGPRLSVANGVWIDQSLSFKNTFKQTVDNIYKASSH 118
Q+F L + ++ +LS+ N +++ + LS + F + +Y + +
Sbjct: 88 SEAEIHQSFQHLLRTL----NQSSDELQLSMGNAMFVKEQLSLLDRFTEDAKRLYGSEAF 143
Query: 119 QVDFQNKAVEVSREINFWAEKETNGFIKEVLPPGSVDDSSKLVFANALYFKGVWNEAFDS 178
DFQ+ A + IN + + T G I +++ +D + +V N ++FK W FD
Sbjct: 144 ATDFQDSAA-AKKLINDYVKNGTRGKITDLIK--DLDSQTMMVLVNYIFFKAKWEMPFDP 200
Query: 179 SKTKEYDFHLLNGGSIKVPFMTSKNKQLVTAFDGFKVLVLPYKQDE-------------- 224
T + F+L + VP M+ + L +PY +DE
Sbjct: 201 QDTHQSRFYLSKKKWVMVPMMSLHH------------LTIPYFRDEELSCTVVELKYTGN 248
Query: 225 ------LPALEKKTGSQSGFLKDHI-----PYEMIEVGDFRIPRFKISFGIEVSRVLKAL 273
LP +K ++ L + + E E+G+ +P+F IS ++ +L L
Sbjct: 249 ASALFILPDQDKMEEVEAMLLPETLKRWRDSLEFREIGELYLPKFSISRDYNLNDILLQL 308
Query: 274 GLVLSFSRKGGRLTEMVDSHVGVG-IFQKSFIEVKEEGTEXXXXXXXVITL 323
G+ +F+ K ++ V + K+ ++V EEGTE ITL
Sbjct: 309 GIEEAFTSKADLSGITGARNLAVSQVVHKAVLDVFEEGTEASAATAVKITL 359
>pdb|3CAA|A Chain A, Cleaved Antichymotrypsin A347r
Length = 341
Score = 77.8 bits (190), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 82/351 (23%), Positives = 143/351 (40%), Gaps = 55/351 (15%)
Query: 9 SEQTDITLSLSKHI--KAPTSSS--SPLSIHVLLSMIAAGSKGPTXXXXXXXXXXXXNE- 63
S D SL K + KAP + SPLSI L+ ++ G+ T E
Sbjct: 9 SANVDFAFSLYKQLVLKAPDKNVIFSPLSISTALAFLSLGAHNTTLTEILKGLKFNLTET 68
Query: 64 -----QQNFASELVAIVFADGSANGGPRLSVANGVWIDQSLSFKNTFKQTVDNIYKASSH 118
Q+F L + ++ +LS+ N +++ + LS + F + +Y + +
Sbjct: 69 SEAEIHQSFQHLLRTL----NQSSDELQLSMGNAMFVKEQLSLLDRFTEDAKRLYGSEAF 124
Query: 119 QVDFQNKAVEVSREINFWAEKETNGFIKEVLPPGSVDDSSKLVFANALYFKGVWNEAFDS 178
DFQ+ A + IN + + T G I +++ +D + +V N ++FK W FD
Sbjct: 125 ATDFQDSAA-AKKLINDYVKNGTRGKITDLIK--DLDSQTMMVLVNYIFFKAKWEMPFDP 181
Query: 179 SKTKEYDFHLLNGGSIKVPFMTSKNKQLVTAFDGFKVLVLPYKQDE-------------- 224
T + F+L + VP M+ + L +PY +DE
Sbjct: 182 QDTHQSRFYLSKKKWVMVPMMSLHH------------LTIPYFRDEELSCTVVELKYTGN 229
Query: 225 ------LPALEKKTGSQSGFLKDHI-----PYEMIEVGDFRIPRFKISFGIEVSRVLKAL 273
LP +K ++ L + + E E+G+ +P+F IS ++ +L L
Sbjct: 230 ASALFILPDQDKMEEVEAMLLPETLKRWRDSLEFREIGELYLPKFSISRDYNLNDILLQL 289
Query: 274 GLVLSFSRKGGRLTEMVDSHVGVG-IFQKSFIEVKEEGTEXXXXXXXVITL 323
G+ +F+ K ++ V + K+ ++V EEGTE ITL
Sbjct: 290 GIEEAFTSKADLSGITGARNLAVSQVVHKAVLDVFEEGTERSAATAVKITL 340
>pdb|1AS4|A Chain A, Cleaved Antichymotrypsin A349r
Length = 341
Score = 77.8 bits (190), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 82/351 (23%), Positives = 143/351 (40%), Gaps = 55/351 (15%)
Query: 9 SEQTDITLSLSKHI--KAPTSSS--SPLSIHVLLSMIAAGSKGPTXXXXXXXXXXXXNE- 63
S D SL K + KAP + SPLSI L+ ++ G+ T E
Sbjct: 9 SANVDFAFSLYKQLVLKAPDKNVIFSPLSISTALAFLSLGAHNTTLTEILKGLKFNLTET 68
Query: 64 -----QQNFASELVAIVFADGSANGGPRLSVANGVWIDQSLSFKNTFKQTVDNIYKASSH 118
Q+F L + ++ +LS+ N +++ + LS + F + +Y + +
Sbjct: 69 SEAEIHQSFQHLLRTL----NQSSDELQLSMGNAMFVKEQLSLLDRFTEDAKRLYGSEAF 124
Query: 119 QVDFQNKAVEVSREINFWAEKETNGFIKEVLPPGSVDDSSKLVFANALYFKGVWNEAFDS 178
DFQ+ A + IN + + T G I +++ +D + +V N ++FK W FD
Sbjct: 125 ATDFQDSAA-AKKLINDYVKNGTRGKITDLIK--DLDSQTMMVLVNYIFFKAKWEMPFDP 181
Query: 179 SKTKEYDFHLLNGGSIKVPFMTSKNKQLVTAFDGFKVLVLPYKQDE-------------- 224
T + F+L + VP M+ + L +PY +DE
Sbjct: 182 QDTHQSRFYLSKKKWVMVPMMSLHH------------LTIPYFRDEELSCTVVELKYTGN 229
Query: 225 ------LPALEKKTGSQSGFLKDHI-----PYEMIEVGDFRIPRFKISFGIEVSRVLKAL 273
LP +K ++ L + + E E+G+ +P+F IS ++ +L L
Sbjct: 230 ASALFILPDQDKMEEVEAMLLPETLKRWRDSLEFREIGELYLPKFSISRDYNLNDILLQL 289
Query: 274 GLVLSFSRKGGRLTEMVDSHVGVG-IFQKSFIEVKEEGTEXXXXXXXVITL 323
G+ +F+ K ++ V + K+ ++V EEGTE ITL
Sbjct: 290 GIEEAFTSKADLSGITGARNLAVSQVVHKAVLDVFEEGTEASRATAVKITL 340
>pdb|2PEE|A Chain A, Crystal Structure Of A Thermophilic Serpin, Tengpin, In
The Native State
pdb|2PEE|B Chain B, Crystal Structure Of A Thermophilic Serpin, Tengpin, In
The Native State
Length = 387
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/293 (24%), Positives = 129/293 (44%), Gaps = 31/293 (10%)
Query: 86 RLSVANGVWIDQS-LSFKNTFKQTVDNIYKASSHQVDFQNKAVEVSREINFWAEKETNGF 144
+L++AN +W ++ F Q + + YKA + F + V +IN W + +TNG
Sbjct: 103 KLTIANSIWFKENDFMPSKDFLQIIADYYKADIFKAAFDSSTV---SDINNWVKSKTNGM 159
Query: 145 IKEVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTKEYDFHLLNGGSIKVPFMTSKNK 204
I ++L +D + NA+ F W ++ + E F + G KV FM S+
Sbjct: 160 IDKIL--NKIDPEDVMYLINAVAFDAEWETVYEKASVHEDIFTDVYGNRQKVEFMNSEEN 217
Query: 205 QLVTAFDGFKVLVLPYKQDE---LPALEKKTGSQSGFLK--------DHIPYEMIEVGDF 253
+ + V PY ++ + L + S + ++K D I I +
Sbjct: 218 LYIEEENAIG-FVKPYAKNHYSFVAILPDENISVNEYIKTLTGQKFIDLIKNAKITLVRA 276
Query: 254 RIPRFKISFGIEVSRVLKALGLVLSFSRKGGRLTEMVDSHVG----VGIFQKSFIEVKEE 309
+P+FK + I+++ L++LG+ +F +++ S +G + K+FI V E
Sbjct: 277 SLPKFKYEYTIKMNETLESLGMTDAFLPDKADFSKLGKSDIGNLYISEVLHKTFISVDEL 336
Query: 310 GTEXXXXXXXVITLKSLP-RFDKIDFVADHPFIFMIREDAT------GVVLSL 355
GT+ IT +P F + + PFIF I +++T G VLSL
Sbjct: 337 GTKAGAVTSVDITAAGIPVNFKTVKL--NRPFIFAIIDNSTNLPIFIGTVLSL 387
>pdb|2VH4|A Chain A, Structure Of A Loop C-sheet Serpin Polymer
pdb|2VH4|B Chain B, Structure Of A Loop C-sheet Serpin Polymer
Length = 381
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/293 (24%), Positives = 129/293 (44%), Gaps = 31/293 (10%)
Query: 86 RLSVANGVWIDQS-LSFKNTFKQTVDNIYKASSHQVDFQNKAVEVSREINFWAEKETNGF 144
+L++AN +W ++ F Q + + YKA + F + V +IN W + +TNG
Sbjct: 96 KLTIANSIWFKENDFMPSKDFLQIIADYYKADIFKAAFDSSTV---SDINNWVKSKTNGM 152
Query: 145 IKEVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTKEYDFHLLNGGSIKVPFMTSKNK 204
I ++L +D + NA+ F W ++ + E F + G KV FM S+
Sbjct: 153 IDKIL--NKIDPEDVMYLINAVAFDAEWETVYEKASVHEDIFTDVYGNRQKVEFMNSEEN 210
Query: 205 QLVTAFDGFKVLVLPYKQDE---LPALEKKTGSQSGFLK--------DHIPYEMIEVGDF 253
+ + V PY ++ + L + S + ++K D I I +
Sbjct: 211 LYIEEENAIG-FVKPYAKNHYSFVAILPDENISVNEYIKTLTGQKFIDLIKNAKITLVRA 269
Query: 254 RIPRFKISFGIEVSRVLKALGLVLSFSRKGGRLTEMVDSHVG----VGIFQKSFIEVKEE 309
+P+FK + I+++ L++LG+ +F +++ S +G + K+FI V E
Sbjct: 270 SLPKFKYEYTIKMNETLESLGMTDAFLPDKADFSKLGKSDIGNLYISEVLHKTFISVDEL 329
Query: 310 GTEXXXXXXXVITLKSLP-RFDKIDFVADHPFIFMIREDAT------GVVLSL 355
GT+ IT +P F + + PFIF I +++T G VLSL
Sbjct: 330 GTKAGAVTSVDITAAGIPVNFKTVKL--NRPFIFAIIDNSTNLPIFIGTVLSL 380
>pdb|2PEF|A Chain A, Crystal Structure Of A Thermophilic Serpin, Tengpin, In
The Latent State
Length = 373
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 75/295 (25%), Positives = 131/295 (44%), Gaps = 35/295 (11%)
Query: 86 RLSVANGVWIDQS-LSFKNTFKQTVDNIYKASSHQVDFQNKAVEVSREINFWAEKETNGF 144
+L++AN +W ++ F Q + + YKA + F + V +IN W + +TNG
Sbjct: 88 KLTIANSIWFKENDFMPSKDFLQIIADYYKADIFKAAFDSSTV---SDINNWVKSKTNGM 144
Query: 145 IKEVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTKEYDFHLLNGGSIKVPFMTSKNK 204
I ++L +D + NA+ F W ++ + E F + G KV FM S+
Sbjct: 145 IDKIL--NKIDPEDVMYLINAVAFDAEWETVYEKASVHEDIFTDVYGNRQKVEFMNSEEN 202
Query: 205 QLVTAFD--GFKVLVLPYKQDE---LPALEKKTGSQSGFLK--------DHIPYEMIEVG 251
+ + GF V PY ++ + L + S + ++K D I I +
Sbjct: 203 LYIEEENAVGF---VKPYAKNHYSFVAILPDENISVNEYIKTLTGQKFIDLIKNAKITLV 259
Query: 252 DFRIPRFKISFGIEVSRVLKALGLVLSFSRKGGRLTEMVDSHVG----VGIFQKSFIEVK 307
+P+FK + I+++ L++LG+ +F +++ S +G + K+FI V
Sbjct: 260 RASLPKFKYEYTIKMNETLESLGMTDAFLPDKADFSKLGKSDIGNLYISEVLHKTFISVD 319
Query: 308 EEGTEXXXXXXXVITLKSLP-RFDKIDFVADHPFIFMIREDAT------GVVLSL 355
E GT+ IT +P F + + PFIF I +++T G VLSL
Sbjct: 320 ELGTKAGAVTSVDITAAGIPVNFKTVKL--NRPFIFAIIDNSTNLPIFIGTVLSL 372
>pdb|1QMN|A Chain A, Alpha1-Antichymotrypsin Serpin In The Delta Conformation
(Partial Loop Insertion)
Length = 401
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 86/379 (22%), Positives = 154/379 (40%), Gaps = 69/379 (18%)
Query: 9 SEQTDITLSLSKHI--KAPTSSS--SPLSIHVLLSMIAAGSKGPTXXXXXXXXXXXXNE- 63
S D SL K + KAP + SP SI L+ ++ G+ T E
Sbjct: 29 SANVDFAFSLYKQLVLKAPDKNVIFSPPSISTALAFLSLGAHNTTLTEILKGLKFNLTET 88
Query: 64 -----QQNFASELVAIVFADGSANGGPRLSVANGVWIDQSLSFKNTFKQTVDNIYKASSH 118
Q+F L + ++ +LS+ N +++ + LS + F + +Y + +
Sbjct: 89 SEAEIHQSFQHLLRTL----NQSSDELQLSMGNAMFVKEQLSLLDRFTEDAKRLYGSEAF 144
Query: 119 QVDFQNKAVEVSREINFWAEKETNGFIKEVLPPGSVDDSSKLVFANALYFKGVWNEAFDS 178
DFQ+ A + IN + + T G I +++ +D + +V N ++FK W FD
Sbjct: 145 ATDFQDSAA-AKKLINDYVKNGTRGKITDLI--KDLDSQTMMVLVNYIFFKAKWEMPFDP 201
Query: 179 SKTKEYDFHLLNGGSIKVPFMTSKNKQLVTAFDGFKVLVLPYKQDE-------------- 224
T + F+L + VP M+ + L +PY +DE
Sbjct: 202 QDTHQSRFYLSKKKWVMVPMMSLHH------------LTIPYFRDEELSCTVVELKYTGN 249
Query: 225 ------LPALEKKTGSQSGFLKDHI-----PYEMIEVGDFRIPRFKISFGIEVSRVLKAL 273
LP +K ++ L + + E E+G+ +P+F IS ++ +L L
Sbjct: 250 ASALFILPDQDKMEEVEAMLLPETLKRWRDSLEFREIGELYLPKFSISRDYNLNDILLQL 309
Query: 274 GLVLSFSRKGGRLTEMVDSHVGVG-IFQKSFIEVKEEGTEXXXXXXXVITL-------KS 325
G+ +F+ K ++ V + K+ ++V EEGTE ITL ++
Sbjct: 310 GIEEAFTSKADLSGITGARNLAVSQVVHKAVLDVFEEGTEASAATAVKITLLSALVETRT 369
Query: 326 LPRFDKIDFVADHPFIFMI 344
+ RF++ PF+ +I
Sbjct: 370 IVRFNR-------PFLMII 381
>pdb|4BB2|A Chain A, Crystal Structure Of Cleaved Corticosteroid-binding
Globulin In Complex With Progesterone
Length = 340
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 79/336 (23%), Positives = 152/336 (45%), Gaps = 49/336 (14%)
Query: 9 SEQTDITLSLSKHIKAPTSSS----SPLSIHVLLSMIAAGSKGPTXXXXXXXXXXXXNEQ 64
S D SL KH+ A + SP+SI + L+M++ G+ G T E+
Sbjct: 10 SANVDFAFSLYKHLVALSPKKNIFISPVSISMALAMLSLGTCGHTRAQLLQGLGFNLTER 69
Query: 65 ------QNFASELVAIVFADGSANGGPRLSVANGVWIDQSLSFKNTFKQTVDNIYKASSH 118
Q F + + +FA ++ +++ N +++D SL +F + + Y++
Sbjct: 70 SETEIHQGF--QHLHQLFA--KSDTSLEMTMGNALFLDGSLELLESFSADIAHYYESEVL 125
Query: 119 QVDFQNKAVEVSREINFWAEKETNGFIKEVLPPGSVDDSSKLVFANALYFKGVWNEAFDS 178
++FQ+ A SR+IN + + +T G I ++ +D + LV N ++FKG W + FD
Sbjct: 126 AMNFQDWAT-ASRQINSYVKNKTQGKIVDLFS--GLDSPAILVLVNYIFFKGTWTQPFDL 182
Query: 179 SKTKEYDFHLLNGGSIKVPFMTSKNK--------------QLVTAFDGFKVLVLPYK--- 221
+ T+E +F++ +KVP M + Q+ +G +LP K
Sbjct: 183 ASTREENFYVDETTVVKVPMMLQSSTISYLHDSELPCQLVQMNYVGNGTVFFILPDKGKM 242
Query: 222 QDELPALEKKTGSQ--SGFLKDHIPYEMIEVGDFRIPRFKISFGIEVSRVLKALGLVLSF 279
+ AL + T ++ +G + D IP+ IS ++ VL+ +G+ F
Sbjct: 243 NTVIAALSRDTINRWSAGLTSSQV--------DLYIPKVTISGVYDLGDVLEEMGIADLF 294
Query: 280 SRKGG--RLTEMVDSHV-GVGIFQKSFIEVKEEGTE 312
+ + R+T+ D+ + + K+ +++ EEG +
Sbjct: 295 TNQANFSRITQ--DAQLKSSKVVHKAVLQLNEEGVD 328
>pdb|1LQ8|A Chain A, Crystal Structure Of Cleaved Protein C Inhibitor
pdb|1LQ8|C Chain C, Crystal Structure Of Cleaved Protein C Inhibitor
pdb|1LQ8|E Chain E, Crystal Structure Of Cleaved Protein C Inhibitor
pdb|1LQ8|G Chain G, Crystal Structure Of Cleaved Protein C Inhibitor
Length = 346
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/337 (22%), Positives = 156/337 (46%), Gaps = 25/337 (7%)
Query: 9 SEQTDITLSLSKHIKAPTSSS----SPLSIHVLLSMIAAGSKGPTXXXXXXXXXXXXNEQ 64
S + D T L + + + S SP+SI + L+M++ G+ T N Q
Sbjct: 14 SSRRDFTFDLYRALASAAPSQNIFFSPVSISMSLAMLSLGAGSSTKMQILEGLGL--NLQ 71
Query: 65 QNFASEL----VAIVFADGSANGGPRLSVANGVWIDQSLSFKNTFKQTVDNIYKASSHQV 120
++ EL ++ G +LS+ N ++ D + ++TF + +Y A +
Sbjct: 72 KSSEKELHRGFQQLLQELNQPRDGFQLSLGNALFTDLVVDLQDTFVSAMKTLYLADTFPT 131
Query: 121 DFQNKAVEVSREINFWAEKETNGFIKEVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSK 180
+F++ A + ++IN + K+T G I ++L ++D ++ ++ N ++FK W +F+
Sbjct: 132 NFRDSAGAM-KQINDYVAKQTKGKIVDLLK--NLDSNAVVIMVNYIFFKAKWETSFNHKG 188
Query: 181 TKEYDFHLLNGGSIKVPFMTSKNK--QLVTAFDGFKVLVLPYKQDE-----LPALEKKTG 233
T+E DF++ + ++VP M+ +++ L+ +V+ +PY+ + LP+ K
Sbjct: 189 TQEQDFYVTSETVVRVPMMSREDQYHYLLDRNLSCRVVGVPYQGNATALFILPSEGKMQQ 248
Query: 234 SQSGF----LKDHIPYEMIEVGDFRIPRFKISFGIEVSRVLKALGLVLSFSRKGGRLTEM 289
++G L+ + + +P+F I ++ +VL +LG+ F+
Sbjct: 249 VENGLSEKTLRKWLKMFKKRQLELYLPKFSIEGSYQLEKVLPSLGISNVFTSHADLSGIS 308
Query: 290 VDSHVGVG-IFQKSFIEVKEEGTEXXXXXXXVITLKS 325
S++ V + K+ +EV E GT + T +S
Sbjct: 309 NHSNIQVSEMVHKAVVEVDESGTRAAAATGTIFTFRS 345
>pdb|3PZF|A Chain A, 1.75a Resolution Structure Of Serpin-2 From Anopheles
Gambiae
Length = 397
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 70/286 (24%), Positives = 123/286 (43%), Gaps = 23/286 (8%)
Query: 87 LSVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDFQNKAVEVSREINFWAEKETNGFIK 146
L++A ++D + N ++Q + Y A +V + N + + IN W + TNG ++
Sbjct: 106 LNIATNFFVDDFIEVINKYQQIANTHYHAMLEKVSYSN-PTQTAATINNWVSEHTNGRLR 164
Query: 147 EVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTKEYDFHLLNGGSIKVPFMTSKNKQL 206
E++ P S+ + + + N +YFKG+W F F+ G +M +N Q
Sbjct: 165 EIVTPDSL-EGAVITLVNVIYFKGLWTYPFPEVANNVKPFYGTRGKPTNAQYM-EQNGQF 222
Query: 207 V---TAFDGFKVLVLPYKQDE------LPALEKKTGS-----QSGFLKDHIPYEMIEVGD 252
+A G ++L LPY+ ++ LP + S L + Y +
Sbjct: 223 YYDNSADLGAQILRLPYRGNKLAMYFILPNPDNTVNQVLDRINSASLHQALWYMEENEVN 282
Query: 253 FRIPRFKISFGIEVSRVLKALGLVLSFSRKG-----GRLTEMVDSHVGVGIFQKSFIEVK 307
+P+FK F +++ L+ +G+ FS+ R D IFQK+ I +
Sbjct: 283 VTLPKFKFDFSEQLNEPLQQVGIREIFSQNASLPLLARGRGARDEVRVSRIFQKAGITIN 342
Query: 308 EEGTEXXXXXXXVITLKSLPRFDKIDFVADHPFIFMIREDATGVVL 353
E G+E + K +I F A+ PFIF I ++ G +L
Sbjct: 343 ELGSEAYAATEIQLVNKFGGDGVQI-FNANRPFIFFIEDETLGTML 387
>pdb|4CAA|A Chain A, Cleaved Antichymotrypsin T345r
Length = 341
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 81/351 (23%), Positives = 142/351 (40%), Gaps = 55/351 (15%)
Query: 9 SEQTDITLSLSKHI--KAPTSSS--SPLSIHVLLSMIAAGSKGPTXXXXXXXXXXXXNE- 63
S D SL K + KAP + SPLSI L+ ++ G+ T E
Sbjct: 9 SANVDFAFSLYKQLVLKAPDKNVIFSPLSISTALAFLSLGAHNTTLTEILKGLKFNLTET 68
Query: 64 -----QQNFASELVAIVFADGSANGGPRLSVANGVWIDQSLSFKNTFKQTVDNIYKASSH 118
Q+F L + ++ +LS+ N +++ + LS + F + +Y + +
Sbjct: 69 SEAEIHQSFQHLLRTL----NQSSDELQLSMGNAMFVKEQLSLLDRFTEDAKRLYGSEAF 124
Query: 119 QVDFQNKAVEVSREINFWAEKETNGFIKEVLPPGSVDDSSKLVFANALYFKGVWNEAFDS 178
DFQ+ A + IN + + T G I +++ +D + +V N ++FK W FD
Sbjct: 125 ATDFQDSAA-AKKLINDYVKNGTRGKITDLIK--DLDSQTMMVLVNYIFFKAKWEMPFDP 181
Query: 179 SKTKEYDFHLLNGGSIKVPFMTSKNKQLVTAFDGFKVLVLPYKQDE-------------- 224
T + F+L + VP M+ + L +PY +DE
Sbjct: 182 QDTHQSRFYLSKKKWVMVPMMSLHH------------LTIPYFRDEELSCTVVELKYTGN 229
Query: 225 ------LPALEKKTGSQSGFLKDHI-----PYEMIEVGDFRIPRFKISFGIEVSRVLKAL 273
LP +K ++ L + + E E+G+ +P+F IS ++ +L L
Sbjct: 230 ASALFILPDQDKMEEVEAMLLPETLKRWRDSLEFREIGELYLPKFSISRDYNLNDILLQL 289
Query: 274 GLVLSFSRKGGRLTEMVDSHVGVG-IFQKSFIEVKEEGTEXXXXXXXVITL 323
G+ +F+ K ++ V + K+ ++V EEG E ITL
Sbjct: 290 GIEEAFTSKADLSGITGARNLAVSQVVHKAVLDVFEEGREASAATAVKITL 340
>pdb|1OO8|A Chain A, Crystal Structure Of A1pi-Pittsburgh In The Native
Conformation
pdb|1OPH|A Chain A, Non-Covalent Complex Between Alpha-1-Pi-Pittsburgh And
S195a Trypsin
Length = 394
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 90/367 (24%), Positives = 157/367 (42%), Gaps = 41/367 (11%)
Query: 13 DITLSLSKHIKAPTSSS----SPLSIHVLLSMIAAGSKGPTXXXXXXXXXXXXNE----- 63
+ SL + + ++S+ SP+SI +M++ G+KG T E
Sbjct: 32 EFAFSLYRQLAHQSNSTNILFSPVSIAAAFAMLSLGAKGDTHDEILEGLNFNLTEIPEAQ 91
Query: 64 -QQNFASELVAIVFADGSANGGPRLSVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDF 122
+ F L + D +L+ NG+++ + L + F + V +Y + + V+F
Sbjct: 92 IHEGFQELLRTLNQPDSQL----QLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNF 147
Query: 123 QNKAVEVSREINFWAEKETNGFIKEVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTK 182
+ E ++IN + EK T G I +++ +D + N ++FKG W F+ T+
Sbjct: 148 GDTE-EAKKQINDYVEKGTQGKIVDLVK--ELDRDTVFALVNYIFFKGKWERPFEVKDTE 204
Query: 183 EYDFHLLNGGSIKVPFMTSK---NKQLVTAFDGFKVLVLPYKQDE-----LPALEKKTGS 234
E DFH+ ++KVP M N Q + VL++ Y + LP E K
Sbjct: 205 EEDFHVDQVTTVKVPMMKRLGMFNIQHSKKLSSW-VLLMKYLGNATAIFFLPD-EGKLQH 262
Query: 235 QSGFLKDHIPYEMIEVGDFR-----IPRFKISFGIEVSRVLKALGLVLSFSRKGGRL--- 286
L I + +E D R +P+ I+ ++ VL LG+ FS G L
Sbjct: 263 LENELTHDIITKFLENEDRRSASLHLPKLSITGTYDLKSVLGQLGITKVFSN-GADLSGV 321
Query: 287 TEMVDSHVGVGIFQKSFIEVKEEGTEXXXXXXXVITLKSLPRFDKIDFVADHPFIFMIRE 346
TE + + K+ + + E+GTE + L+++PR + + PF+F+I E
Sbjct: 322 TEEAPLKLSKAV-HKAVLTIDEKGTE----AAGAMFLEAIPRSIPPEVKFNKPFVFLIIE 376
Query: 347 DATGVVL 353
T L
Sbjct: 377 QNTKAPL 383
>pdb|3DY0|A Chain A, Crystal Structure Of Cleaved Pci Bound To Heparin
Length = 336
Score = 74.7 bits (182), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 74/334 (22%), Positives = 154/334 (46%), Gaps = 25/334 (7%)
Query: 9 SEQTDITLSLSKHIKAPTSSS----SPLSIHVLLSMIAAGSKGPTXXXXXXXXXXXXNEQ 64
S + D T L + + + S SP+SI + L+M++ G+ T N Q
Sbjct: 7 SSRRDFTFDLYRALASAAPSQNIFFSPVSISMSLAMLSLGAGSSTKMQILEGLGL--NLQ 64
Query: 65 QNFASEL----VAIVFADGSANGGPRLSVANGVWIDQSLSFKNTFKQTVDNIYKASSHQV 120
++ EL ++ G +LS+ N ++ D + ++TF + +Y A +
Sbjct: 65 KSSEKELHRGFQQLLQELNQPRDGFQLSLGNALFTDLVVDLQDTFVSAMKTLYLADTFPT 124
Query: 121 DFQNKAVEVSREINFWAEKETNGFIKEVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSK 180
+F++ A + ++IN + K+T G I ++L ++D ++ ++ N ++FK W +F+
Sbjct: 125 NFRDSAGAM-KQINDYVAKQTKGKIVDLLK--NLDSNAVVIMVNYIFFKAKWETSFNHKG 181
Query: 181 TKEYDFHLLNGGSIKVPFMTSKNK--QLVTAFDGFKVLVLPYKQDE-----LPALEKKTG 233
T+E DF++ + ++VP M+ +++ L+ +V+ +PY+ + LP+ K
Sbjct: 182 TQEQDFYVTSETVVRVPMMSREDQYHYLLDRNLSCRVVGVPYQGNATALFILPSEGKMQQ 241
Query: 234 SQSGF----LKDHIPYEMIEVGDFRIPRFKISFGIEVSRVLKALGLVLSFSRKGGRLTEM 289
++G L+ + + +P+F I ++ +VL +LG+ F+
Sbjct: 242 VENGLSEKTLRKWLKMFKKRQLELYLPKFSIEGSYQLEKVLPSLGISNVFTSHADLSGIS 301
Query: 290 VDSHVGVG-IFQKSFIEVKEEGTEXXXXXXXVIT 322
S++ V + K+ +EV E GT + T
Sbjct: 302 NHSNIQVSEMVHKAVVEVDESGTRAAAATGTIFT 335
>pdb|1ATU|A Chain A, Uncleaved Alpha-1-Antitrypsin
Length = 374
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 87/366 (23%), Positives = 155/366 (42%), Gaps = 39/366 (10%)
Query: 13 DITLSLSKHIKAPTSSS----SPLSIHVLLSMIAAGSKGPTXXXXXXXXXXXXNE----- 63
+ SL + + ++S+ SP+SI +M++ G+KG T E
Sbjct: 12 EFAFSLYRQLAHQSNSTNILFSPVSIAAAFAMLSLGAKGDTHDEILEGLNFNLTEIPEAQ 71
Query: 64 -QQNFASELVAIVFADGSANGGPRLSVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDF 122
+ F L + D +L+ NG+++ + L + F + V +Y + + V+F
Sbjct: 72 IHEGFQELLRTLNQPDSQL----QLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNF 127
Query: 123 QNKAVEVSREINFWAEKETNGFIKEVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTK 182
+ E ++IN + EK T G I +++ +D + N ++FKG W F+ T+
Sbjct: 128 GDTE-EAKKQINDYVEKGTQGKIVDLVK--ELDRDTVFALVNYIFFKGKWERPFEVKDTE 184
Query: 183 EYDFHLLNGGSIKVPFMTSK---NKQLVTAFDGFKVLVLPYKQDE-----LPALEKKTGS 234
E DFH+ ++KVP M N Q + VL++ Y + LP E K
Sbjct: 185 EEDFHVDQVTTVKVPMMKRLGMFNIQHCKKLSSW-VLLMKYLGNATAIFFLPD-EGKLQH 242
Query: 235 QSGFLKDHIPYEMIEVGDFR-----IPRFKISFGIEVSRVLKALGLVLSFSRKG--GRLT 287
L I + +E D R +P+ I+ ++ VL LG+ FS +T
Sbjct: 243 LENELTHDIITKFLENEDRRSASLHLPKLSITGTYDLKSVLGQLGITKVFSNGADLSGVT 302
Query: 288 EMVDSHVGVGIFQKSFIEVKEEGTEXXXXXXXVITLKSLPRFDKIDFVADHPFIFMIRED 347
E + + K+ + + E+GTE + L+++P + + PF+F+I E
Sbjct: 303 EEAPLKLSKAV-HKAVLTIDEKGTE----AAGAMFLEAIPMSIPPEVKFNKPFVFLIIEQ 357
Query: 348 ATGVVL 353
T L
Sbjct: 358 NTKAPL 363
>pdb|1KCT|A Chain A, Alpha1-Antitrypsin
Length = 394
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 87/363 (23%), Positives = 155/363 (42%), Gaps = 41/363 (11%)
Query: 13 DITLSLSKHIKAPTSSS----SPLSIHVLLSMIAAGSKGPTXXXXXXXXXXXXNE----- 63
+ SL + + ++S+ SP+SI +M++ G+KG T E
Sbjct: 32 EFAFSLYRQLAHQSNSTNIFFSPVSIAAAFAMLSLGAKGDTHDEILEGLNFNLTEIPEAQ 91
Query: 64 -QQNFASELVAIVFADGSANGGPRLSVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDF 122
+ F L + D +L+ NG+++ + L + F + V +Y + + V+F
Sbjct: 92 IHEGFQELLRTLNQPDSQL----QLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNF 147
Query: 123 QNKAVEVSREINFWAEKETNGFIKEVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTK 182
+ E ++IN + EK T G I +++ +D + N ++FKG W F+ T+
Sbjct: 148 GDTE-EAKKQINDYVEKGTQGKIVDLVK--ELDRDTVFALVNYIFFKGKWERPFEVKDTE 204
Query: 183 EYDFHLLNGGSIKVPFMTSK---NKQLVTAFDGFKVLVLPYKQDE-----LPALEKKTGS 234
E DFH+ ++KVP M N Q + VL++ Y + LP E K
Sbjct: 205 EEDFHVDQVTTVKVPMMKRLGMFNIQHCKKLSSW-VLLMKYLGNATAIFFLPD-EGKLQH 262
Query: 235 QSGFLKDHIPYEMIEVGDFR-----IPRFKISFGIEVSRVLKALGLVLSFSRKGGRL--- 286
L I + +E D R +P+ I+ ++ VL LG+ FS G L
Sbjct: 263 LENELTHDIITKFLENEDRRSASLHLPKLSITGTYDLKSVLGQLGITKVFSN-GADLSGV 321
Query: 287 TEMVDSHVGVGIFQKSFIEVKEEGTEXXXXXXXVITLKSLPRFDKIDFVADHPFIFMIRE 346
TE + + K+ + + E+GTE + L+++P + + PF+F++ E
Sbjct: 322 TEEAPLKLSKAV-HKAVLTIDEKGTE----AAGAMFLEAIPMSIPPEVKFNKPFVFLMIE 376
Query: 347 DAT 349
T
Sbjct: 377 QNT 379
>pdb|1IZ2|A Chain A, Interactions Causing The Kinetic Trap In Serpin Protein
Folding
Length = 394
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 87/366 (23%), Positives = 154/366 (42%), Gaps = 39/366 (10%)
Query: 13 DITLSLSKHIKAPTSSS----SPLSIHVLLSMIAAGSKGPTXXXXXXXXXXXXNE--QQN 66
+ SL + + ++S+ SP+SI +M++ G+KG T E +
Sbjct: 32 EFAFSLYRQLAHQSNSTNILFSPVSIAAAFAMLSLGAKGDTHDEILEGLNFNLTEIPEAQ 91
Query: 67 FASELVAIVFADGSANGGPRLSVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDFQNKA 126
++ + +L+ NG+++ + L + F + V +Y + + V+F +
Sbjct: 92 IHEGFQELLHTLNQPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNFGDTE 151
Query: 127 VEVSREINFWAEKETNGFIKEVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTKEYDF 186
E ++IN + EK T G I +++ +D + N ++FKG W F+ T+E DF
Sbjct: 152 -EAKKQINDYVEKGTQGKIVDLVK--ELDRDTVFALVNYIFFKGKWERPFEVKDTEEEDF 208
Query: 187 HLLNGGSIKVPFMTSK---NKQLVTAFDGFKVLVLPYKQDE-----LPALEKKTGSQSGF 238
H+ ++KVP M N Q + VL++ Y + LP E K
Sbjct: 209 HVDQVTTVKVPMMKRLGMFNIQHCKKLSSW-VLLMKYLGNATAIFFLPD-EGKLQHLENE 266
Query: 239 LKDHIPYEMIEVGDFR-----IPRFKISFGIEVSRVLKALGLVLSFSRKGGRL---TEMV 290
L I + +E D R +P+ I+ ++ VL LG+ FS G L TE
Sbjct: 267 LTHDIITKFLENEDRRSASLHLPKLSITGTYDLKSVLGQLGITKVFSN-GADLSGVTEEA 325
Query: 291 DSHVGVGIFQKSFIEVKEEGTEXXXXXXXVITLKSLP---RFDKIDFVADHPFIFMIRED 347
+ + K+ + + E+GTE S+P +F+K PF+F+I +
Sbjct: 326 PLKLSKAV-HKAVLTIDEKGTEAAGAMFLEAIPMSIPPEAKFNK-------PFVFLIIDQ 377
Query: 348 ATGVVL 353
T L
Sbjct: 378 NTKAPL 383
>pdb|3T1P|A Chain A, Crystal Structure Of An Alpha-1-Antitrypsin Trimer
Length = 371
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 87/363 (23%), Positives = 155/363 (42%), Gaps = 41/363 (11%)
Query: 13 DITLSLSKHIKAPTSSS----SPLSIHVLLSMIAAGSKGPTXXXXXXXXXXXXNE----- 63
+ SL + + ++S+ SP+SI +M++ G+K T E
Sbjct: 9 EFAFSLYRQLAHQSNSTNIFFSPVSIATAFAMLSLGTKADTHDEILEGLNFNLTEIPEAQ 68
Query: 64 -QQNFASELVAIVFADGSANGGPRLSVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDF 122
+ F L + D +L+ NG+++ + L + F + V +Y + + V+F
Sbjct: 69 IHEGFQELLRTLNQPDSQL----QLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNF 124
Query: 123 QNKAVEVSREINFWAEKETNGFIKEVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTK 182
+ E ++IN + EK T G I +++ +D + N ++FKG W F+ T+
Sbjct: 125 GDTE-EAKKQINDYVEKGTQGKIVDLVK--ELDRDTVFALVNYIFFKGKWERPFEVKDTE 181
Query: 183 EYDFHLLNGGSIKVPFMTSK---NKQLVTAFDGFKVLVLPYKQDE-----LPALEKKTGS 234
E DFH+ ++KVP M N Q + VL++ Y + LP E K
Sbjct: 182 EEDFHVDQVTTVKVPMMKRLGMFNIQHSKKLSSW-VLLMKYLGNATAIFFLPD-EGKLQH 239
Query: 235 QSGFLKDHIPYEMIEVGDFR-----IPRFKISFGIEVSRVLKALGLVLSFSRKGGRL--- 286
L I + +E D R +P+ I+ ++ VL LG+ FS G L
Sbjct: 240 LENELTHDIITKFLENEDRRSASLHLPKLCITGTYDLKSVLGQLGITKVFSN-GADLSGV 298
Query: 287 TEMVDSHVGVGIFQKSFIEVKEEGTEXXXXXXXVITLKSLPRFDKIDFVADHPFIFMIRE 346
TE + + K+ + + E+GTE + L+++PR + + PF+F++ E
Sbjct: 299 TEEAPLKLSKAV-HKAVLCIDEKGTE----AAGAMFLEAIPRSIPPEVKFNKPFVFLMIE 353
Query: 347 DAT 349
T
Sbjct: 354 QNT 356
>pdb|1YXA|A Chain A, Serpina3n, A Murine Orthologue Of Human Antichymotrypsin
pdb|1YXA|B Chain B, Serpina3n, A Murine Orthologue Of Human Antichymotrypsin
Length = 398
Score = 71.2 bits (173), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 76/316 (24%), Positives = 127/316 (40%), Gaps = 54/316 (17%)
Query: 3 DVLESISEQTDITLSLSKHI--KAPTSSS--SPLSIHVLLSMIAAGSKGPTXXXXXXXXX 58
D L S TD SL K + K P ++ SPLSI L++++ G+KG T
Sbjct: 23 DSLTLASINTDFAFSLYKELVLKNPDTNIVFSPLSISAALALVSLGAKGNTLEEILEGLK 82
Query: 59 XXXNE------QQNFASELVAIVFADGSANGGPRLSVANGVWIDQSLSFKNTFKQTVDNI 112
E Q F L + ++S + ++I++ F++ +
Sbjct: 83 FNLTETSEADIHQGFGHLLQRL----NQPKDQVQISTGSALFIEKRQQILTEFQEKAKTL 138
Query: 113 YKASSHQVDFQNKAVEVSREINFWAEKETNGFIKEVLPPGSVDDSSKLVFANALYFKGVW 172
Y+A + DFQ + + + IN + K+T G IKE++ +D + +V N +YFK W
Sbjct: 139 YQAEAFTADFQ-QPRQAKKLINDYVRKQTQGMIKELV--SDLDKRTLMVLVNYIYFKAKW 195
Query: 173 NEAFDSSKTKEYDFHLLNGGSIKVPFMTSKNKQLVTAFDGFKVLVLPYKQDELPALE--- 229
FD T + +F+ + VP M+ ++ L PY +DE +
Sbjct: 196 KVPFDPLDTFKSEFYCGKRRPVIVPMMSMED------------LTTPYFRDEELSCTVVE 243
Query: 230 -KKTGSQSGF--LKDHIPYEMIE-------------------VGDFRIPRFKISFGIEVS 267
K TG+ S L D + +E + + +P+F IS +
Sbjct: 244 LKYTGNASALFILPDQGRMQQVEASLQPETLRKWKNSLKPRMIDELHLPKFSISTDYSLE 303
Query: 268 RVLKALGLVLSFSRKG 283
VL LG+ FS +
Sbjct: 304 DVLSKLGIREVFSTQA 319
>pdb|1HP7|A Chain A, A 2.1 Angstrom Structure Of An Uncleaved
Alpha-1-Antitrypsin Shows Variability Of The Reactive
Center And Other Loops
Length = 394
Score = 71.2 bits (173), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 83/359 (23%), Positives = 154/359 (42%), Gaps = 33/359 (9%)
Query: 13 DITLSLSKHIKAPTSSS----SPLSIHVLLSMIAAGSKGPTXXXXXXXXXXXXNE--QQN 66
+ SL + + ++S+ SP+SI +M++ G+KG T E +
Sbjct: 32 EFAFSLYRQLAHQSNSTNIFFSPVSIATAFAMLSLGTKGDTHDEILEGLNFNLTEIPEAQ 91
Query: 67 FASELVAIVFADGSANGGPRLSVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDFQNKA 126
++ + +L+ NG+++ + L + F + V +Y + + V+F +
Sbjct: 92 IHEGFQELLHTLNQPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNFGDTE 151
Query: 127 VEVSREINFWAEKETNGFIKEVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTKEYDF 186
E ++IN + EK T G I +++ +D + N ++FKG W F+ T+E DF
Sbjct: 152 -EAKKQINDYVEKGTQGKIVDLVK--ELDRDTVFALVNYIFFKGKWERPFEVKDTEEEDF 208
Query: 187 HLLNGGSIKVPFMTSK---NKQLVTAFDGFKVLVLPYKQDE-----LPALEKKTGSQSGF 238
H+ ++KVP M N Q + VL++ Y + LP E K
Sbjct: 209 HVDQVTTVKVPMMKRLGMFNIQHCKKLSSW-VLLMKYLGNATAIFFLPD-EGKLQHLENE 266
Query: 239 LKDHIPYEMIEVGDFR-----IPRFKISFGIEVSRVLKALGLVLSFSRKGGRL---TEMV 290
L I + +E D R +P+ I+ ++ VL LG+ FS G L TE
Sbjct: 267 LTHDIITKFLENEDRRSASLHLPKLSITGTYDLKSVLGQLGITKVFSN-GADLSGVTEEA 325
Query: 291 DSHVGVGIFQKSFIEVKEEGTEXXXXXXXVITLKSLPRFDKIDFVADHPFIFMIREDAT 349
+ + K+ + + E+GTE + L+++P + + PF+F++ + T
Sbjct: 326 PLKLSKAV-HKAVLTIDEKGTE----AAGAMFLEAIPMSIPPEVKFNKPFVFLMIDQNT 379
>pdb|3NE4|A Chain A, 1.8 Angstrom Structure Of Intact Native Wild-Type
Alpha-1-Antitrypsin
Length = 424
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 81/341 (23%), Positives = 144/341 (42%), Gaps = 35/341 (10%)
Query: 30 SPLSIHVLLSMIAAGSKGPTXXXXXXXXXXXXNE------QQNFASELVAIVFADGSANG 83
SP+SI +M++ G+K T E + F L + D
Sbjct: 83 SPVSIATAFAMLSLGTKADTHDEILEGLNFNLTEIPEAQIHEGFQELLRTLNQPDSQL-- 140
Query: 84 GPRLSVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDFQNKAVEVSREINFWAEKETNG 143
+L+ NG+++ + L + F + V +Y + + V+F + E ++IN + EK T G
Sbjct: 141 --QLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNFGDTE-EAKKQINDYVEKGTQG 197
Query: 144 FIKEVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTKEYDFHLLNGGSIKVPFMTSK- 202
I +++ +D + N ++FKG W F+ T+E DFH+ ++KVP M
Sbjct: 198 KIVDLV--KELDRDTVFALVNYIFFKGKWERPFEVKDTEEEDFHVDQVTTVKVPMMKRLG 255
Query: 203 --NKQLVTAFDGFKVLVLPYKQDE-----LPALEKKTGSQSGFLKDHIPYEMIEVGDFR- 254
N Q + VL++ Y + LP E K L I + +E D R
Sbjct: 256 MFNIQHCKKLSSW-VLLMKYLGNATAIFFLPD-EGKLQHLENELTHDIITKFLENEDRRS 313
Query: 255 ----IPRFKISFGIEVSRVLKALGLVLSFSRKG--GRLTEMVDSHVGVGIFQKSFIEVKE 308
+P+ I+ ++ VL LG+ FS +TE + + K+ + + E
Sbjct: 314 ASLHLPKLSITGTYDLKSVLGQLGITKVFSNGADLSGVTEEAPLKLSKAV-HKAVLTIDE 372
Query: 309 EGTEXXXXXXXVITLKSLPRFDKIDFVADHPFIFMIREDAT 349
+GTE + L+++P + + PF+F++ E T
Sbjct: 373 KGTE----AAGAMFLEAIPMSIPPEVKFNKPFVFLMIEQNT 409
>pdb|1QLP|A Chain A, 2.0 Angstrom Structure Of Intact Alpha-1-Antitrypsin: A
Canonical Template For Active Serpins
Length = 394
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 86/363 (23%), Positives = 154/363 (42%), Gaps = 41/363 (11%)
Query: 13 DITLSLSKHIKAPTSSS----SPLSIHVLLSMIAAGSKGPTXXXXXXXXXXXXNE----- 63
+ SL + + ++S+ SP+SI +M++ G+K T E
Sbjct: 32 EFAFSLYRQLAHQSNSTNIFFSPVSIATAFAMLSLGTKADTHDEILEGLNFNLTEIPEAQ 91
Query: 64 -QQNFASELVAIVFADGSANGGPRLSVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDF 122
+ F L + D +L+ NG+++ + L + F + V +Y + + V+F
Sbjct: 92 IHEGFQELLRTLNQPDSQL----QLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNF 147
Query: 123 QNKAVEVSREINFWAEKETNGFIKEVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTK 182
+ E ++IN + EK T G I +++ +D + N ++FKG W F+ T+
Sbjct: 148 GDTE-EAKKQINDYVEKGTQGKIVDLV--KELDRDTVFALVNYIFFKGKWERPFEVKDTE 204
Query: 183 EYDFHLLNGGSIKVPFMTSK---NKQLVTAFDGFKVLVLPYKQDE-----LPALEKKTGS 234
E DFH+ ++KVP M N Q + VL++ Y + LP E K
Sbjct: 205 EEDFHVDQVTTVKVPMMKRLGMFNIQHCKKLSSW-VLLMKYLGNATAIFFLPD-EGKLQH 262
Query: 235 QSGFLKDHIPYEMIEVGDFR-----IPRFKISFGIEVSRVLKALGLVLSFSRKGGRL--- 286
L I + +E D R +P+ I+ ++ VL LG+ FS G L
Sbjct: 263 LENELTHDIITKFLENEDRRSASLHLPKLSITGTYDLKSVLGQLGITKVFSN-GADLSGV 321
Query: 287 TEMVDSHVGVGIFQKSFIEVKEEGTEXXXXXXXVITLKSLPRFDKIDFVADHPFIFMIRE 346
TE + + K+ + + E+GTE + L+++P + + PF+F++ E
Sbjct: 322 TEEAPLKLSKAV-HKAVLTIDEKGTE----AAGAMFLEAIPMSIPPEVKFNKPFVFLMIE 376
Query: 347 DAT 349
T
Sbjct: 377 QNT 379
>pdb|1MTP|A Chain A, The X-Ray Crystal Structure Of A Serpin From A
Thermophilic Prokaryote
Length = 323
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 83/196 (42%), Gaps = 11/196 (5%)
Query: 30 SPLSIHVLLSMIAAGSKGPTXXXXXXXXXXXXNEQQNFASELVAIVFADGSANGGPRLSV 89
SP S+ L ++AAG++ + A L A+ D + P L+
Sbjct: 33 SPYSVACALGVLAAGARA------TTRTELTTLLGTDPAPLLAAL---DRAVTDSPDLAS 83
Query: 90 ANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDFQNKAVEVSREINFWAEKETNGFIKEVL 149
+W+ + +++F+ T+ + + DF+ V +N T G I+E+L
Sbjct: 84 RTVLWVSADVPVRSSFRATMHDRPDSDVRTADFRTNPEGVRATVNADIADATRGMIRELL 143
Query: 150 PPGSVDDSSKLVFANALYFKGVWNEAFDSSKTKEYDFHLLNGGSIKVPFMTSKNKQLVTA 209
P G+V + + NAL+ K W F++ T+E F G +VPFM
Sbjct: 144 PQGAVTPDLRAILTNALWAKARWTTPFEAHLTREGTFRTPRGPK-RVPFMHRTKTMPYAT 202
Query: 210 FDGFKVLVLPYKQDEL 225
G++++ L + DEL
Sbjct: 203 ARGWRMVTL-HAHDEL 217
>pdb|4AFX|A Chain A, Crystal Structure Of The Reactive Loop Cleaved Zpi In I2
Space Group
pdb|4AJU|A Chain A, Crystal Structure Of The Reactive Loop Cleaved Zpi In P41
Space Group
Length = 387
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 114/254 (44%), Gaps = 21/254 (8%)
Query: 87 LSVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDFQNKAVEVSREINFWAEKETNGFIK 146
L+ + +I + K TF + ++F+N A + R +N + KET G I
Sbjct: 139 LTQGSFAFIHKDFDVKETFFNLSKRYFDTECVPMNFRN-ASQAKRLMNHYINKETRGKIP 197
Query: 147 EVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTKEYDFHLLNGGSIKVPFMTSKNKQL 206
++ ++ +KL+ + + FKG W FD T+ FHL +IKVP M K
Sbjct: 198 KLF--DEINPETKLILVDYILFKGKWLTPFDPVFTEVDTFHLDKYKTIKVPMMYGAGKFA 255
Query: 207 VTAFDGFK--VLVLPYKQDE--LPALEKKTGSQSGFLKDHIPYEMIEVG---------DF 253
T F+ VL LPY+ + L L +K G L+D++ +++E +
Sbjct: 256 STFDKNFRCHVLKLPYQGNATMLVVLMEKMGDHLA-LEDYLTTDLVETWLRNMKTRNMEV 314
Query: 254 RIPRFKISFGIEVSRVLKALGLVLSFSRKGGRLTEMVDSHVGVG---IFQKSFIEVKEEG 310
P+FK+ E+ +L+ +G+ FS L+E+ + + + Q++ IEV E G
Sbjct: 315 FFPKFKLDQKYEMHELLRQMGIRRIFS-PFADLSELSATGRNLQVSRVLQRTVIEVDERG 373
Query: 311 TEXXXXXXXVITLK 324
TE IT +
Sbjct: 374 TEAVAGILSEITAR 387
>pdb|3DRM|A Chain A, 2.2 Angstrom Crystal Structure Of Thr114phe Alpha1-
Antitrypsin
Length = 404
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 86/363 (23%), Positives = 154/363 (42%), Gaps = 41/363 (11%)
Query: 13 DITLSLSKHIKAPTSSS----SPLSIHVLLSMIAAGSKGPTXXXXXXXXXXXXNE----- 63
+ SL + + ++S+ SP+SI +M++ G+K T E
Sbjct: 42 EFAFSLYRQLAHQSNSTNIFFSPVSIATAFAMLSLGTKADTHDEILEGLNFNLTEIPEAQ 101
Query: 64 -QQNFASELVAIVFADGSANGGPRLSVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDF 122
+ F L + D +L+ NG+++ + L + F + V +Y + + V+F
Sbjct: 102 IHEGFQELLRTLNQPDSQL----QLTFGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNF 157
Query: 123 QNKAVEVSREINFWAEKETNGFIKEVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTK 182
+ E ++IN + EK T G I +++ +D + N ++FKG W F+ T+
Sbjct: 158 GDTE-EAKKQINDYVEKGTQGKIVDLVK--ELDRDTVFALVNYIFFKGKWERPFEVKDTE 214
Query: 183 EYDFHLLNGGSIKVPFMTSK---NKQLVTAFDGFKVLVLPYKQDE-----LPALEKKTGS 234
E DFH+ ++KVP M N Q + VL++ Y + LP E K
Sbjct: 215 EEDFHVDQVTTVKVPMMKRLGMFNIQHCKKLSSW-VLLMKYLGNATAIFFLPD-EGKLQH 272
Query: 235 QSGFLKDHIPYEMIEVGDFR-----IPRFKISFGIEVSRVLKALGLVLSFSRKGGRL--- 286
L I + +E D R +P+ I+ ++ VL LG+ FS G L
Sbjct: 273 LENELTHDIITKFLENEDRRSASLHLPKLSITGTYDLKSVLGQLGITKVFSN-GADLSGV 331
Query: 287 TEMVDSHVGVGIFQKSFIEVKEEGTEXXXXXXXVITLKSLPRFDKIDFVADHPFIFMIRE 346
TE + + K+ + + E+GTE + L+++P + + PF+F++ E
Sbjct: 332 TEEAPLKLSKAV-HKAVLTIDEKGTE----AAGAMFLEAIPMSIPPEVKFNKPFVFLMIE 386
Query: 347 DAT 349
T
Sbjct: 387 QNT 389
>pdb|2QUG|A Chain A, Crystal Structure Of Alpha-1-Antitrypsin, Crystal Form A
pdb|3CWL|A Chain A, Crystal Structure Of Alpha-1-Antitrypsin, Crystal Form B
pdb|3CWM|A Chain A, Crystal Structure Of Alpha-1-Antitrypsin Complexed With
Citrate
Length = 394
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 86/363 (23%), Positives = 154/363 (42%), Gaps = 41/363 (11%)
Query: 13 DITLSLSKHIKAPTSSS----SPLSIHVLLSMIAAGSKGPTXXXXXXXXXXXXNE----- 63
+ SL + + ++S+ SP+SI +M++ G+K T E
Sbjct: 32 EFAFSLYRQLAHQSNSTNIFFSPVSIATAFAMLSLGTKADTHDEILEGLNFNLTEIPEAQ 91
Query: 64 -QQNFASELVAIVFADGSANGGPRLSVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDF 122
+ F L + D +L+ NG+++ + L + F + V +Y + + V+F
Sbjct: 92 IHEGFQELLRTLNQPDSQL----QLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNF 147
Query: 123 QNKAVEVSREINFWAEKETNGFIKEVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTK 182
+ E ++IN + EK T G I +++ +D + N ++FKG W F+ T+
Sbjct: 148 GDTE-EAKKQINDYVEKGTQGKIVDLV--KELDRDTVFALVNYIFFKGKWERPFEVKDTE 204
Query: 183 EYDFHLLNGGSIKVPFMTSK---NKQLVTAFDGFKVLVLPYKQDE-----LPALEKKTGS 234
E DFH+ ++KVP M N Q + VL++ Y + LP E K
Sbjct: 205 EEDFHVDQVTTVKVPMMKRLGMFNIQHXKKLSSW-VLLMKYLGNATAIFFLPD-EGKLQH 262
Query: 235 QSGFLKDHIPYEMIEVGDFR-----IPRFKISFGIEVSRVLKALGLVLSFSRKGGRL--- 286
L I + +E D R +P+ I+ ++ VL LG+ FS G L
Sbjct: 263 LENELTHDIITKFLENEDRRSASLHLPKLSITGTYDLKSVLGQLGITKVFSN-GADLSGV 321
Query: 287 TEMVDSHVGVGIFQKSFIEVKEEGTEXXXXXXXVITLKSLPRFDKIDFVADHPFIFMIRE 346
TE + + K+ + + E+GTE + L+++P + + PF+F++ E
Sbjct: 322 TEEAPLKLSKAV-HKAVLTIDEKGTE----AAGAMFLEAIPMSIPPEVKFNKPFVFLMIE 376
Query: 347 DAT 349
T
Sbjct: 377 QNT 379
>pdb|1PSI|A Chain A, Intact Recombined Alpha1-Antitrypsin Mutant Phe 51 To Leu
Length = 394
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 86/363 (23%), Positives = 154/363 (42%), Gaps = 41/363 (11%)
Query: 13 DITLSLSKHIKAPTSSS----SPLSIHVLLSMIAAGSKGPTXXXXXXXXXXXXNE----- 63
+ SL + + ++S+ SP+SI +M++ G+K T E
Sbjct: 32 EFAFSLYRQLAHQSNSTNILFSPVSIATAFAMLSLGTKADTHDEILEGLNFNLTEIPEAQ 91
Query: 64 -QQNFASELVAIVFADGSANGGPRLSVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDF 122
+ F L + D +L+ NG+++ + L + F + V +Y + + V+F
Sbjct: 92 IHEGFQELLRTLNQPDSQL----QLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNF 147
Query: 123 QNKAVEVSREINFWAEKETNGFIKEVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTK 182
+ E ++IN + EK T G I +++ +D + N ++FKG W F+ T+
Sbjct: 148 GDTE-EAKKQINDYVEKGTQGKIVDLV--KELDRDTVFALVNYIFFKGKWERPFEVKDTE 204
Query: 183 EYDFHLLNGGSIKVPFMTSK---NKQLVTAFDGFKVLVLPYKQDE-----LPALEKKTGS 234
E DFH+ ++KVP M N Q + VL++ Y + LP E K
Sbjct: 205 EEDFHVDQVTTVKVPMMKRLGMFNIQHXKKLSSW-VLLMKYLGNATAIFFLPD-EGKLQH 262
Query: 235 QSGFLKDHIPYEMIEVGDFR-----IPRFKISFGIEVSRVLKALGLVLSFSRKGGRL--- 286
L I + +E D R +P+ I+ ++ VL LG+ FS G L
Sbjct: 263 LENELTHDIITKFLENEDRRSASLHLPKLSITGTYDLKSVLGQLGITKVFSN-GADLSGV 321
Query: 287 TEMVDSHVGVGIFQKSFIEVKEEGTEXXXXXXXVITLKSLPRFDKIDFVADHPFIFMIRE 346
TE + + K+ + + E+GTE + L+++P + + PF+F++ E
Sbjct: 322 TEEAPLKLSKAV-HKAVLTIDEKGTE----AAGAMFLEAIPMSIPPEVKFNKPFVFLMIE 376
Query: 347 DAT 349
T
Sbjct: 377 QNT 379
>pdb|1SNG|A Chain A, Structure Of A Thermophilic Serpin In The Native State
Length = 370
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 82/196 (41%), Gaps = 11/196 (5%)
Query: 30 SPLSIHVLLSMIAAGSKGPTXXXXXXXXXXXXNEQQNFASELVAIVFADGSANGGPRLSV 89
SP S+ L ++AAG++ + A L A+ D + P L+
Sbjct: 37 SPYSVAXALGVLAAGARA------TTRTELTTLLGTDPAPLLAAL---DRAVTDSPDLAS 87
Query: 90 ANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDFQNKAVEVSREINFWAEKETNGFIKEVL 149
+W+ + +++F+ T+ + + DF+ V +N T G I+E+L
Sbjct: 88 RTVLWVSADVPVRSSFRATMHDRPDSDVRTADFRTNPEGVRATVNADIADATRGMIRELL 147
Query: 150 PPGSVDDSSKLVFANALYFKGVWNEAFDSSKTKEYDFHLLNGGSIKVPFMTSKNKQLVTA 209
P G+V + + NAL+ K W F++ T+ F G +VPFM
Sbjct: 148 PQGAVTPDLRAILTNALWAKARWTTPFEAHLTRAGTFRTPRGPK-RVPFMHRTKTMPYAT 206
Query: 210 FDGFKVLVLPYKQDEL 225
G++++ L + DEL
Sbjct: 207 ARGWRMVTL-HAHDEL 221
>pdb|2D26|A Chain A, Active Site Distortion Is Sufficient For Proteinase
Inhibit Second Crystal Structure Of Covalent
Serpin-Proteinase Complex
Length = 358
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 77/322 (23%), Positives = 138/322 (42%), Gaps = 29/322 (9%)
Query: 13 DITLSLSKHIKAPTSSS----SPLSIHVLLSMIAAGSKGPTXXXXXXXXXXXXNE--QQN 66
+ SL + + ++S+ SP+SI +M++ G+KG T E +
Sbjct: 32 EFAFSLYRQLAHQSNSTNILFSPVSIAAAFAMLSLGAKGDTHDEILEGLNFNLTEIPEAQ 91
Query: 67 FASELVAIVFADGSANGGPRLSVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDFQNKA 126
++ + +L+ NG+++ + L + F + V +Y + + V+F +
Sbjct: 92 IHEGFQELLHTLNQPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNFGDTE 151
Query: 127 VEVSREINFWAEKETNGFIKEVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTKEYDF 186
E ++IN + EK T G I +++ +D + N ++FKG W F+ T+E DF
Sbjct: 152 -EAKKQINDYVEKGTQGKIVDLVK--ELDRDTVFALVNYIFFKGKWERPFEVKDTEEEDF 208
Query: 187 HLLNGGSIKVPFMTSK---NKQLVTAFDGFKVLVLPYKQDE-----LPALEKKTGSQSGF 238
H+ ++KVP M N Q + VL++ Y + LP E K
Sbjct: 209 HVDQVTTVKVPMMKRLGMFNIQHSKKLSSW-VLLMKYLGNATAIFFLPD-EGKLQHLENE 266
Query: 239 LKDHIPYEMIEVGDFR-----IPRFKISFGIEVSRVLKALGLVLSFSRKGGRL---TEMV 290
L I + +E D R +P+ I+ ++ VL LG+ FS G L TE
Sbjct: 267 LTHDIITKFLENEDRRSASLHLPKLSITGTYDLKSVLGQLGITKVFSN-GADLSGVTEEA 325
Query: 291 DSHVGVGIFQKSFIEVKEEGTE 312
+ + K+ + + E+GTE
Sbjct: 326 PLKLSKAV-HKAVLTIDEKGTE 346
>pdb|2V95|A Chain A, Struture Of Corticosteroid-Binding Globulin In Complex
With Cortisol
Length = 371
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/332 (19%), Positives = 139/332 (41%), Gaps = 31/332 (9%)
Query: 30 SPLSIHVLLSMIAAGSKGPTXXXXXXXXXXXXNEQQNFASELVAIVFADGSANGGPRLSV 89
SP+SI + L+M++ GS T + + + ++ G +++
Sbjct: 36 SPVSISMALAMVSLGS-AQTQSLQSLGFNLTETSEAEIHQSFQYLNYLLKQSDTGLEMNM 94
Query: 90 ANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDFQNKAVEVSREINFWAEKETNGFIKEVL 149
N +++ Q L K++F V Y++ + +DF++ + S++IN + +T G I+ V
Sbjct: 95 GNAMFLLQKLKLKDSFLADVKQYYESEALAIDFED-WTKASQQINQHVKDKTQGKIEHVF 153
Query: 150 PPGSVDDSSKLVFANALYFKGVWNEAFDSSKTKEYDFHLLNGGSIKVPFMTSKNK----- 204
+D + + N ++ +G+W F T+E DF++ ++KVP M
Sbjct: 154 --SDLDSPASFILVNYIFLRGIWELPFSPENTREEDFYVNETSTVKVPMMVQSGSIGYFR 211
Query: 205 ---------QLVTAFDGFKVLVLPYK---QDELPALEKKTGSQSGFLKDHIPYEMIEVGD 252
Q+ +G +LP + + AL + T + G K P ++ +
Sbjct: 212 DSVFPCQLIQMDYVGNGTAFFILPDQGQMDTVIAALSRDTIDRWG--KLMTPRQV----N 265
Query: 253 FRIPRFKISFGIEVSRVLKALGLVLSFSRKGGRLTEMVDSHVGVGIFQKSFIEVKEEGTE 312
IP+F +S ++ VL+ L + + + D + + + K+ +++ E
Sbjct: 266 LYIPKFSMSDTYDLKDVLEDLNIKDLLTNQSDFSGNTKDVPLTLTMVHKAMLQLDEGNVL 325
Query: 313 XXXXXXXVITLKSLPRFDKIDFVADHPFIFMI 344
+ L+S P +D + PFI ++
Sbjct: 326 PNSTNGAPLHLRSEP----LDIKFNKPFILLL 353
>pdb|3STO|A Chain A, Serpin From The Trematode Schistosoma Haematobium
Length = 406
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/280 (22%), Positives = 129/280 (46%), Gaps = 27/280 (9%)
Query: 87 LSVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDFQNKAVEVSREINFWAEKETNGFIK 146
+ ++ G++++++ + F +++ N + QVDF N+ + +IN W ++++NG ++
Sbjct: 115 VRISTGIFVEKTYEVERRFNESIANDSEGELKQVDFSNRT-SATVDINDWVDQQSNGLLE 173
Query: 147 EVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTKEYDFHLLNGGSIKVPFMTSKNKQL 206
+ DD++ + N YF+ W F+ T++ DF++ I V T +
Sbjct: 174 KFFTDDIPDDTAX-ILVNVFYFRDFWQSPFEPHYTRKEDFYISPDRQITVDXXTQEGVXK 232
Query: 207 VTAF--DGFK-------------VLVLPYKQDELP-ALEKKTGSQSGFLKDHIPYEMIEV 250
F +GF+ V+VLP ++ L A E G++ L +++
Sbjct: 233 YGKFEDEGFEIVSKPLNNTRFTFVIVLPLEKWSLNGATELLNGNK--VLSEYVKNLKETT 290
Query: 251 GDFRIPRFKISFGIEVSRVLKALGLVLSFSRKGGRLTEMV-DSHVGVGIF-QKSFIEVKE 308
R+P+F + +++ LK++G+V F L+ + + ++ V F Q + +++ E
Sbjct: 291 VSLRLPKFTLKNTLDLVPTLKSIGVVDLFDPVKSDLSGITPNPNLYVNEFIQTNVLKLNE 350
Query: 309 EGTEXXXXXXXVITLKS--LPRFDKIDFVADHPFIFMIRE 346
G E + S +P ++DF HPFI I +
Sbjct: 351 SGIEATTVTSPIFVPFSAIIP---EVDFHVTHPFICFIYD 387
>pdb|1EZX|A Chain A, Crystal Structure Of A Serpin:protease Complex
Length = 335
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 79/326 (24%), Positives = 138/326 (42%), Gaps = 37/326 (11%)
Query: 13 DITLSLSKHIKAPTSSS----SPLSIHVLLSMIAAGSKGPTXXXXXXXXXXXXNE----- 63
+ SL + + ++S+ SP+SI +M++ G+K T E
Sbjct: 9 EFAFSLYRQLAHQSNSTNIFFSPVSIATAFAMLSLGTKADTHDEILEGLNFNLTEIPEAQ 68
Query: 64 -QQNFASELVAIVFADGSANGGPRLSVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDF 122
+ F L + D +L+ NG+++ + L + F + V +Y + + V+F
Sbjct: 69 IHEGFQELLRTLNQPDSQL----QLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNF 124
Query: 123 QNKAVEVSREINFWAEKETNGFIKEVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTK 182
+ E ++IN + EK T G I +++ +D + N ++FKG W F+ T+
Sbjct: 125 GDTE-EAKKQINDYVEKGTQGKIVDLVK--ELDRDTVFALVNYIFFKGKWERPFEVKDTE 181
Query: 183 EYDFHLLNGGSIKVPFMTSK---NKQLVTAFDGFKVLVLPYKQDE-----LPALEKKTGS 234
E DFH+ ++KVP M N Q + VL++ Y + LP E K
Sbjct: 182 EEDFHVDQVTTVKVPMMKRLGMFNIQHCKKLSSW-VLLMKYLGNATAIFFLPD-EGKLQH 239
Query: 235 QSGFLKDHIPYEMIEVGDFR-----IPRFKISFGIEVSRVLKALGLVLSFSRKGGRL--- 286
L I + +E D R +P+ I+ ++ VL LG+ FS G L
Sbjct: 240 LENELTHDIITKFLENEDRRSASLHLPKLSITGTYDLKSVLGQLGITKVFSN-GADLSGV 298
Query: 287 TEMVDSHVGVGIFQKSFIEVKEEGTE 312
TE + + K+ + + E+GTE
Sbjct: 299 TEEAPLKLSKAV-HKAVLTIDEKGTE 323
>pdb|1D5S|A Chain A, Crystal Structure Of Cleaved Antitrypsin Polymer
Length = 334
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 79/326 (24%), Positives = 138/326 (42%), Gaps = 37/326 (11%)
Query: 13 DITLSLSKHIKAPTSSS----SPLSIHVLLSMIAAGSKGPTXXXXXXXXXXXXNE----- 63
+ SL + + ++S+ SP+SI +M++ G+K T E
Sbjct: 13 EFAFSLYRQLAHQSNSTNIFFSPVSIATAFAMLSLGTKADTHDEILEGLNFNLTEIPEAQ 72
Query: 64 -QQNFASELVAIVFADGSANGGPRLSVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDF 122
+ F L + D +L+ NG+++ + L + F + V +Y + + V+F
Sbjct: 73 IHEGFQELLRTLNQPDSQL----QLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNF 128
Query: 123 QNKAVEVSREINFWAEKETNGFIKEVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTK 182
+ E ++IN + EK T G I +++ +D + N ++FKG W F+ T+
Sbjct: 129 GDTE-EAKKQINDYVEKGTQGKIVDLVK--ELDRDTVFALVNYIFFKGKWERPFEVKDTE 185
Query: 183 EYDFHLLNGGSIKVPFMTSK---NKQLVTAFDGFKVLVLPYKQDE-----LPALEKKTGS 234
E DFH+ ++KVP M N Q + VL++ Y + LP E K
Sbjct: 186 EEDFHVDQVTTVKVPMMKRLGMFNIQHCKKLSSW-VLLMKYLGNATAIFFLPD-EGKLQH 243
Query: 235 QSGFLKDHIPYEMIEVGDFR-----IPRFKISFGIEVSRVLKALGLVLSFSRKGGRL--- 286
L I + +E D R +P+ I+ ++ VL LG+ FS G L
Sbjct: 244 LENELTHDIITKFLENEDRRSASLHLPKLSITGTYDLKSVLGQLGITKVFSN-GADLSGV 302
Query: 287 TEMVDSHVGVGIFQKSFIEVKEEGTE 312
TE + + K+ + + E+GTE
Sbjct: 303 TEEAPLKLSKAV-HKAVLTIDEKGTE 327
>pdb|3DRU|A Chain A, Crystal Structure Of Gly117phe Alpha1-Antitrypsin
pdb|3DRU|B Chain B, Crystal Structure Of Gly117phe Alpha1-Antitrypsin
pdb|3DRU|C Chain C, Crystal Structure Of Gly117phe Alpha1-Antitrypsin
Length = 404
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 85/363 (23%), Positives = 153/363 (42%), Gaps = 41/363 (11%)
Query: 13 DITLSLSKHIKAPTSSS----SPLSIHVLLSMIAAGSKGPTXXXXXXXXXXXXNE----- 63
+ SL + + ++S+ SP+SI +M++ G+K T E
Sbjct: 42 EFAFSLYRQLAHQSNSTNIFFSPVSIATAFAMLSLGTKADTHDEILEGLNFNLTEIPEAQ 101
Query: 64 -QQNFASELVAIVFADGSANGGPRLSVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDF 122
+ F L + D +L+ N +++ + L + F + V +Y + + V+F
Sbjct: 102 IHEGFQELLRTLNQPDSQL----QLTTGNFLFLSEGLKLVDKFLEDVKKLYHSEAFTVNF 157
Query: 123 QNKAVEVSREINFWAEKETNGFIKEVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTK 182
+ E ++IN + EK T G I +++ +D + N ++FKG W F+ T+
Sbjct: 158 GDTE-EAKKQINDYVEKGTQGKIVDLV--KELDRDTVFALVNYIFFKGKWERPFEVKDTE 214
Query: 183 EYDFHLLNGGSIKVPFMTSK---NKQLVTAFDGFKVLVLPYKQDE-----LPALEKKTGS 234
E DFH+ ++KVP M N Q + VL++ Y + LP E K
Sbjct: 215 EEDFHVDQVTTVKVPMMKRLGMFNIQHCKKLSSW-VLLMKYLGNATAIFFLPD-EGKLQH 272
Query: 235 QSGFLKDHIPYEMIEVGDFR-----IPRFKISFGIEVSRVLKALGLVLSFSRKGGRL--- 286
L I + +E D R +P+ I+ ++ VL LG+ FS G L
Sbjct: 273 LENELTHDIITKFLENEDRRSASLHLPKLSITGTYDLKSVLGQLGITKVFSN-GADLSGV 331
Query: 287 TEMVDSHVGVGIFQKSFIEVKEEGTEXXXXXXXVITLKSLPRFDKIDFVADHPFIFMIRE 346
TE + + K+ + + E+GTE + L+++P + + PF+F++ E
Sbjct: 332 TEEAPLKLSKAV-HKAVLTIDEKGTE----AAGAMFLEAIPMSIPPEVKFNKPFVFLMIE 386
Query: 347 DAT 349
T
Sbjct: 387 QNT 389
>pdb|7API|A Chain A, The S Variant Of Human Alpha1-Antitrypsin, Structure And
Implications For Function And Metabolism
pdb|8API|A Chain A, The S Variant Of Human Alpha1-antitrypsin, Structure And
Implications For Function And Metabolism
pdb|9API|A Chain A, The S Variant Of Human Alpha1-Antitrypsin, Structure And
Implications For Function And Metabolism
Length = 347
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 79/326 (24%), Positives = 138/326 (42%), Gaps = 37/326 (11%)
Query: 13 DITLSLSKHIKAPTSSS----SPLSIHVLLSMIAAGSKGPTXXXXXXXXXXXXNE----- 63
+ SL + + ++S+ SP+SI +M++ G+K T E
Sbjct: 21 EFAFSLYRQLAHQSNSTNIFFSPVSIATAFAMLSLGTKADTHDEILEGLNFNLTEIPEAQ 80
Query: 64 -QQNFASELVAIVFADGSANGGPRLSVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDF 122
+ F L + D +L+ NG+++ + L + F + V +Y + + V+F
Sbjct: 81 IHEGFQELLRTLNQPDSQL----QLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNF 136
Query: 123 QNKAVEVSREINFWAEKETNGFIKEVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTK 182
+ E ++IN + EK T G I +++ +D + N ++FKG W F+ T+
Sbjct: 137 GDTE-EAKKQINDYVEKGTQGKIVDLVK--ELDRDTVFALVNYIFFKGKWERPFEVKDTE 193
Query: 183 EYDFHLLNGGSIKVPFMTSK---NKQLVTAFDGFKVLVLPYKQDE-----LPALEKKTGS 234
E DFH+ ++KVP M N Q + VL++ Y + LP E K
Sbjct: 194 EEDFHVDQVTTVKVPMMKRLGMFNIQHCKKLSSW-VLLMKYLGNATAIFFLPD-EGKLQH 251
Query: 235 QSGFLKDHIPYEMIEVGDFR-----IPRFKISFGIEVSRVLKALGLVLSFSRKGGRL--- 286
L I + +E D R +P+ I+ ++ VL LG+ FS G L
Sbjct: 252 LENELTHDIITKFLENEDRRSASLHLPKLSITGTYDLKSVLGQLGITKVFSN-GADLSGV 310
Query: 287 TEMVDSHVGVGIFQKSFIEVKEEGTE 312
TE + + K+ + + E+GTE
Sbjct: 311 TEEAPLKLSKAV-HKAVLTIDEKGTE 335
>pdb|1QMB|A Chain A, Cleaved Alpha-1-Antitrypsin Polymer
Length = 326
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 72/323 (22%), Positives = 136/323 (42%), Gaps = 33/323 (10%)
Query: 13 DITLSLSKHIKAPTSSS---SPLSIHVLLSMIAAGSKGPTXXXXXXXXXXXXNE------ 63
+ SL + + +S++ SP+SI +M++ G+K T E
Sbjct: 8 EFAFSLYRQLAHQSSTNIFFSPVSIATAFAMLSLGTKADTHDEILEGLNFNLTEIPEAAI 67
Query: 64 QQNFASELVAIVFADGSANGGPRLSVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDFQ 123
+ F L + D +L+ NG+++ + L + F + V +Y + + V+F
Sbjct: 68 HEGFQELLRTLNQPDSQL----QLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNFG 123
Query: 124 NKAVEVSREINFWAEKETNGFIKEVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTKE 183
+ E ++IN + EK T G I +++ +D + N ++FKG W F+ T+E
Sbjct: 124 DTE-EAKKQINDYVEKGTQGKIVDLVK--ELDRDTVFALVNYIFFKGKWERPFEVKDTEE 180
Query: 184 YDFHLLNGGSIKVPFMTSK---NKQLVTAFDGFKVLVLPYKQDELPALEKKTGSQSGFLK 240
DFH+ ++KVP M N Q + VL++ Y + + L+
Sbjct: 181 EDFHVDQVTTVKVPMMKRLGMFNIQHCKKLSSW-VLLMKYLGNATAIFFLPDEGKLQHLE 239
Query: 241 DHIPYEMI--------EVGDFRIPRFKISFGIEVSRVLKALGLVLSFSRKGGRL---TEM 289
+ + +++I +P+ I+ ++ VL LG+ FS G L TE
Sbjct: 240 NELTHDIITKFLENDRRSASLHLPKLSITGTYDLKSVLGQLGITKVFSN-GADLSGVTEE 298
Query: 290 VDSHVGVGIFQKSFIEVKEEGTE 312
+ + K+ + + E+GTE
Sbjct: 299 APLKLSKAV-HKAVLTIDEKGTE 320
>pdb|3NDF|A Chain A, Cleaved Antitrypsin With P8-P6 Asp
Length = 343
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 79/326 (24%), Positives = 138/326 (42%), Gaps = 37/326 (11%)
Query: 13 DITLSLSKHIKAPTSSS----SPLSIHVLLSMIAAGSKGPTXXXXXXXXXXXXNE----- 63
+ SL + + ++S+ SP+SI +M++ G+K T E
Sbjct: 17 EFAFSLYRQLAHQSNSTNIFFSPVSIATAFAMLSLGTKADTHDEILEGLNFNLTEIPEAQ 76
Query: 64 -QQNFASELVAIVFADGSANGGPRLSVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDF 122
+ F L + D +L+ NG+++ + L + F + V +Y + + V+F
Sbjct: 77 IHEGFQELLRTLNQPDSQL----QLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNF 132
Query: 123 QNKAVEVSREINFWAEKETNGFIKEVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTK 182
+ E ++IN + EK T G I +++ +D + N ++FKG W F+ T+
Sbjct: 133 GDTE-EAKKQINDYVEKGTQGKIVDLVK--ELDRDTVFALVNYIFFKGKWERPFEVKDTE 189
Query: 183 EYDFHLLNGGSIKVPFMTSK---NKQLVTAFDGFKVLVLPYKQDE-----LPALEKKTGS 234
E DFH+ ++KVP M N Q + VL++ Y + LP E K
Sbjct: 190 EEDFHVDQVTTVKVPMMKRLGMFNIQHAKKLSSW-VLLMKYLGNATAIFFLPD-EGKLQH 247
Query: 235 QSGFLKDHIPYEMIEVGDFR-----IPRFKISFGIEVSRVLKALGLVLSFSRKGGRL--- 286
L I + +E D R +P+ I+ ++ VL LG+ FS G L
Sbjct: 248 LENELTHDIITKFLENEDRRSASLHLPKLSITGTYDLKSVLGQLGITKVFSN-GADLSGV 306
Query: 287 TEMVDSHVGVGIFQKSFIEVKEEGTE 312
TE + + K+ + + E+GTE
Sbjct: 307 TEEAPLKLSKAV-HKAVLTIDEKGTE 331
>pdb|3NDD|A Chain A, Cleaved Antitrypsin With P10 Pro, And P9-P6 Asp
Length = 343
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 79/326 (24%), Positives = 138/326 (42%), Gaps = 37/326 (11%)
Query: 13 DITLSLSKHIKAPTSSS----SPLSIHVLLSMIAAGSKGPTXXXXXXXXXXXXNE----- 63
+ SL + + ++S+ SP+SI +M++ G+K T E
Sbjct: 17 EFAFSLYRQLAHQSNSTNIFFSPVSIATAFAMLSLGTKADTHDEILEGLNFNLTEIPEAQ 76
Query: 64 -QQNFASELVAIVFADGSANGGPRLSVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDF 122
+ F L + D +L+ NG+++ + L + F + V +Y + + V+F
Sbjct: 77 IHEGFQELLRTLNQPDSQL----QLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNF 132
Query: 123 QNKAVEVSREINFWAEKETNGFIKEVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTK 182
+ E ++IN + EK T G I +++ +D + N ++FKG W F+ T+
Sbjct: 133 GDTE-EAKKQINDYVEKGTQGKIVDLVK--ELDRDTVFALVNYIFFKGKWERPFEVKDTE 189
Query: 183 EYDFHLLNGGSIKVPFMTSK---NKQLVTAFDGFKVLVLPYKQDE-----LPALEKKTGS 234
E DFH+ ++KVP M N Q + VL++ Y + LP E K
Sbjct: 190 EEDFHVDQVTTVKVPMMKRLGMFNIQHAKKLSSW-VLLMKYLGNATAIFFLPD-EGKLQH 247
Query: 235 QSGFLKDHIPYEMIEVGDFR-----IPRFKISFGIEVSRVLKALGLVLSFSRKGGRL--- 286
L I + +E D R +P+ I+ ++ VL LG+ FS G L
Sbjct: 248 LENELTHDIITKFLENEDRRSASLHLPKLSITGTYDLKSVLGQLGITKVFSN-GADLSGV 306
Query: 287 TEMVDSHVGVGIFQKSFIEVKEEGTE 312
TE + + K+ + + E+GTE
Sbjct: 307 TEEAPLKLSKAV-HKAVLTIDEKGTE 331
>pdb|2R9Y|A Chain A, Structure Of Antiplasmin
Length = 430
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 80/338 (23%), Positives = 144/338 (42%), Gaps = 32/338 (9%)
Query: 30 SPLSIHVLLSMIAAGSKGPTXXXXXXXXXXXXNEQQNFASELVAIVFADGSANGGP-RLS 88
SPLS+ + LS +A G++ T N S L ++ + N GP +
Sbjct: 48 SPLSVALALSHLALGAQNQTLHSLHRVL------HMNTGSCLPHLL-SHFYQNLGPGTIR 100
Query: 89 VANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDFQNKAVEVSREINFWAEKETNGFIKEV 148
+A +++ + K+ F + + ++ A V K E IN W ++ T G I++
Sbjct: 101 LAARIYLQKGFPIKDDFLEQSERLFGAKP--VKLTGKQEEDLANINQWVKEATEGKIEDF 158
Query: 149 LPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTKEYDFHLLNGGSIKVPFMTSKNKQL-- 206
L + DS+ L+ NA++F G W FD S T++ FHL ++ V M + + L
Sbjct: 159 L--SELPDSTVLLLLNAIHFHGFWRTKFDPSLTQKDFFHLDERFTVSVDMMHAVSYPLRW 216
Query: 207 -VTAFDGFKVLVLPYKQDE-----LPALEKKTGSQ--SGFLKDHIPYEMIEVGDFRI--P 256
+ +V P+K + +P + S+ + D + + ++ ++ P
Sbjct: 217 FLLEQPEIQVAHFPFKNNMSFVVVMPTYFEWNVSEVLANLTWDTLYHPSLQERPTKVWLP 276
Query: 257 RFKISFGIEVSRVLKALGLVLSFSRKGGRLTEMVDSHVGVGIFQ-KSFIEVKEEGTEXXX 315
+ + +++ L LGL F +G L + + ++ V Q +S +E+ E G E
Sbjct: 277 KLHLQQQLDLVATLSQLGLQELF--QGPDLRGISEQNLVVSSVQHQSTMELSEAGVEAAA 334
Query: 316 XXXXVITLKSLPRFDKIDFVADHPFIFMIREDATGVVL 353
+ SL F + PF+F I ED GV L
Sbjct: 335 ATSVAMNRMSLS-----SFTVNRPFLFFIMEDTIGVPL 367
>pdb|4AU2|A Chain A, Crystal Structure Of A Hsp47-Collagen Complex
pdb|4AU2|B Chain B, Crystal Structure Of A Hsp47-Collagen Complex
pdb|4AU2|C Chain C, Crystal Structure Of A Hsp47-Collagen Complex
pdb|4AU2|D Chain D, Crystal Structure Of A Hsp47-Collagen Complex
pdb|4AU4|A Chain A, Crystal Structure Of Hsp47
pdb|4AU4|B Chain B, Crystal Structure Of Hsp47
pdb|4AU4|C Chain C, Crystal Structure Of Hsp47
pdb|4AU4|D Chain D, Crystal Structure Of Hsp47
pdb|4AU4|E Chain E, Crystal Structure Of Hsp47
pdb|4AU4|F Chain F, Crystal Structure Of Hsp47
pdb|4AU4|G Chain G, Crystal Structure Of Hsp47
pdb|3ZHA|A Chain A, Molecular Basis For The Action Of The Collagen-Specific
Chaperone Hsp47 Serpinh1 And Its Structure-Specific
Client Recognition.
pdb|3ZHA|B Chain B, Molecular Basis For The Action Of The Collagen-Specific
Chaperone Hsp47 Serpinh1 And Its Structure-Specific
Client Recognition.
pdb|3ZHA|C Chain C, Molecular Basis For The Action Of The Collagen-Specific
Chaperone Hsp47 Serpinh1 And Its Structure-Specific
Client Recognition.
pdb|3ZHA|D Chain D, Molecular Basis For The Action Of The Collagen-Specific
Chaperone Hsp47 Serpinh1 And Its Structure-Specific
Client Recognition.
pdb|3ZHA|K Chain K, Molecular Basis For The Action Of The Collagen-Specific
Chaperone Hsp47 Serpinh1 And Its Structure-Specific
Client Recognition.
pdb|3ZHA|L Chain L, Molecular Basis For The Action Of The Collagen-Specific
Chaperone Hsp47 Serpinh1 And Its Structure-Specific
Client Recognition.
pdb|3ZHA|P Chain P, Molecular Basis For The Action Of The Collagen-Specific
Chaperone Hsp47 Serpinh1 And Its Structure-Specific
Client Recognition.
pdb|3ZHA|Q Chain Q, Molecular Basis For The Action Of The Collagen-Specific
Chaperone Hsp47 Serpinh1 And Its Structure-Specific
Client Recognition
Length = 392
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/277 (23%), Positives = 115/277 (41%), Gaps = 35/277 (12%)
Query: 98 SLSFKNTFKQTVDNIYKASSHQVDFQNKAVEVSREINFWAEKETNGFIKEVLPPGSVDDS 157
S+SF F ++ Y +++F++K + + IN WA + T+G + EV D
Sbjct: 105 SVSFAEDFVRSSKQHYNCEHSKINFRDKRSAL-QSINEWAAQTTDGKLPEVTKDVERTDG 163
Query: 158 SKLVFANALYFKGVWNEAFDSSKTKEYDFHLLNGGSIKVPFMTSKNKQLVTAFDGFK--- 214
+ LV NA++FK W+E F F + ++ V M L +D K
Sbjct: 164 ALLV--NAMFFKPHWDEKFHHKMVDNRGFMVTRSYTVGVTMMHRTG--LYNYYDDEKEKL 219
Query: 215 --------------VLVLPYKQDELPALEKK-TGSQSGFLKDHIPYEMIEVGDFRIPRFK 259
++++P+ + L LEK T Q + + + + +P+
Sbjct: 220 QIVEMPLAHKLSSLIILMPHHVEPLERLEKLLTKEQLKIWMGKMQKKAVAIS---LPKGV 276
Query: 260 ISFGIEVSRVLKALGLVLSFSRKGGRLTEMV---DSHVGVGIFQKSFIEVKEEGTEXXXX 316
+ ++ + L LGL + + L+ M D ++ +F + E EG
Sbjct: 277 VEVTHDLQKHLAGLGLTEAIDKNKADLSRMSGKKDLYLA-SVFHATAFEWDTEGNPFDQD 335
Query: 317 XXXVITLKSLPRFDKIDFVADHPFIFMIREDATGVVL 353
L+S P+ F ADHPFIF++R+ +G +L
Sbjct: 336 IYGREELRS-PKL----FYADHPFIFLVRDTQSGSLL 367
>pdb|1F0C|A Chain A, Structure Of The Viral Serpin Crma
Length = 305
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 79/325 (24%), Positives = 131/325 (40%), Gaps = 59/325 (18%)
Query: 13 DITLSLSKHIKAPTSSSSPLSIHVLLSMIAAGSKGPTXXXXXXXXXXXXNEQQNFASELV 72
DI ++ +K SP SI +L+++ G+ G T A +L
Sbjct: 2 DIFREIASSMKGENVFISPPSISSVLTILYYGANGST------------------AEQLS 43
Query: 73 AIVFADGSANGGP-RLSVANGVWIDQSLSFKNTFKQTVDNIYKA----SSHQVDFQNKAV 127
V + N N V+ S FK++F + + + ++ VD NK V
Sbjct: 44 KYVEKEADKNKDDISFKSMNKVYGRYSAVFKDSFLRKIGDNFQTVDFTDCRTVDAINKCV 103
Query: 128 EVSREINFWAEKETNGFIKEVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTKEYDFH 187
++ + E + N + E L P + L+ +A+YFK W F+ T +Y F+
Sbjct: 104 DI------FTEGKINPLLDEPLSPDTC-----LLAISAVYFKAKWLMPFEKEFTSDYPFY 152
Query: 188 L-----------------LNGGSIKVPFMTSKNKQLVTAFDGFKVLVLPYKQDELPALEK 230
+ N S+K F +L D V++LP D L ++E+
Sbjct: 153 VSPTEMVDVSMMSMYGEAFNHASVKESFGNFSIIELPYVGDTSMVVILPDNIDGLESIEQ 212
Query: 231 KTGSQSGFLK--DHIPYEMIEVGDFRIPRFKISFGIEVSRVLKALGLVLSFSRKGGRLTE 288
+ + F K D + I+V IP+FK++ + L LGL F G +
Sbjct: 213 NL-TDTNFKKWCDSMDAMFIDV---HIPKFKVTGSYNLVDALVKLGLTEVFGSTGD-YSN 267
Query: 289 MVDSHVGV-GIFQKSFIEVKEEGTE 312
M +S V V + K++I+V EE TE
Sbjct: 268 MCNSDVSVDAMIHKTYIDVNEEYTE 292
>pdb|1C8O|A Chain A, 2.9 A Structure Of Cleaved Viral Serpin Crma
Length = 300
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 82/325 (25%), Positives = 134/325 (41%), Gaps = 59/325 (18%)
Query: 13 DITLSLSKHIKAPTSSSSPLSIHVLLSMIAAGSKGPTXXXXXXXXXXXXNEQQNFASELV 72
DI ++ +K SP SI +L+++ G+ G T A +L
Sbjct: 2 DIFREIASSMKGENVFISPPSISSVLTILYYGANGST------------------AEQLS 43
Query: 73 AIVFADGSANGGP-RLSVANGVWIDQSLSFKNTFKQTVDNIYKA----SSHQVDFQNKAV 127
V + N N V+ S FK++F + + + ++ S VD NK+V
Sbjct: 44 KYVEKEADKNKDDISFKSMNKVYGRYSAVFKDSFLRKIGDNFQTVDFTDSRTVDAINKSV 103
Query: 128 EVSREINFWAEKETNGFIKEVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTKEYDFH 187
++ + E + N + E L P D+S L + A+YFK W F+ T +Y F+
Sbjct: 104 DI------FTEGKINPLLDEPLSP----DTSLLAIS-AVYFKAKWLMPFEKEFTSDYPFY 152
Query: 188 L-----------------LNGGSIKVPFMTSKNKQLVTAFDGFKVLVLPYKQDELPALEK 230
+ N S+K F +L D V++LP D L ++E+
Sbjct: 153 VSPTEMVDVSMMSMYGEAFNHASVKESFGNFSIIELPYVGDTSMVVILPDNIDGLESIEQ 212
Query: 231 KTGSQSGFLK--DHIPYEMIEVGDFRIPRFKISFGIEVSRVLKALGLVLSFSRKGGRLTE 288
+ + F K D + I+V IP+FK++ + L LGL F G +
Sbjct: 213 NL-TDTNFKKWSDSMDAMFIDV---HIPKFKVTGSYNLVDALVKLGLTEVFGSTGD-YSN 267
Query: 289 MVDSHVGV-GIFQKSFIEVKEEGTE 312
M +S V V + K++I+V EE TE
Sbjct: 268 MSNSDVSVDAMIHKTYIDVNEEYTE 292
>pdb|1M93|B Chain B, 1.65 A Structure Of Cleaved Viral Serpin Crma
Length = 245
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/246 (27%), Positives = 109/246 (44%), Gaps = 40/246 (16%)
Query: 91 NGVWIDQSLSFKNTFKQTVDNIYKA----SSHQVDFQNKAVEVSREINFWAEKETNGFIK 146
N V+ S FK++F + + + ++ S VD NK+V++ + E + N +
Sbjct: 8 NKVYGRYSAVFKDSFLRKIGDNFQTVDFTDSRTVDAINKSVDI------FTEGKINPLLD 61
Query: 147 EVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTKEYDFHL-----------------L 189
E L P D+S L + A+YFK W F+ T +Y F++
Sbjct: 62 EPLSP----DTSLLAIS-AVYFKAKWLMPFEKEFTSDYPFYVSPTEMVDVSMMSMYGEAF 116
Query: 190 NGGSIKVPFMTSKNKQLVTAFDGFKVLVLPYKQDELPALEKKTGSQSGFLK--DHIPYEM 247
N S+K F +L D V++LP D L ++E+ + + F K D +
Sbjct: 117 NHASVKESFGNFSIIELPYVGDTSMVVILPDNIDGLESIEQNL-TDTNFKKWSDSMDAMF 175
Query: 248 IEVGDFRIPRFKISFGIEVSRVLKALGLVLSFSRKGGRLTEMVDSHVGV-GIFQKSFIEV 306
I+V IP+FK++ + L LGL F G + M +S V V + K++I+V
Sbjct: 176 IDV---HIPKFKVTGSYNLVDALVKLGLTEVFGSTGD-YSNMSNSDVSVDAMIHKTYIDV 231
Query: 307 KEEGTE 312
EE TE
Sbjct: 232 NEEYTE 237
>pdb|1IMV|A Chain A, 2.85 A Crystal Structure Of Pedf
Length = 398
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 65/289 (22%), Positives = 121/289 (41%), Gaps = 39/289 (13%)
Query: 87 LSVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDFQNKAVEVSREINFWAEKETNGFIK 146
L A+ + ++ L K++F ++ Y + +V N +++ +EIN W + + G +
Sbjct: 116 LKSASRIVFEKKLRIKSSFVAPLEKSY-GTRPRVLTGNPRLDL-QEINNWVQAQMKGKLA 173
Query: 147 EVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTKEYDFHLLNGGSIKVPFMTSKNKQL 206
+ D ++ +FKG W FDS KT DF+L +++VP M+ L
Sbjct: 174 RST--KEIPDEISILLLGVAHFKGQWVTKFDSRKTSLEDFYLDEERTVRVPMMSDPKAVL 231
Query: 207 VTAFD---GFKVLVLPYK-------------QDELPALEKKTGSQSGFLKDHIPYEMIEV 250
D K+ LP L +E+ S+ F+ D I E+ V
Sbjct: 232 RYGLDSDLSCKIAQLPLTGSMSIIFFLPLKVTQNLTLIEESLTSE--FIHD-IDRELKTV 288
Query: 251 -GDFRIPRFKISFGIEVSRVLKALGL-----VLSFSRKGGRLTEMVDSHVGVGIFQKSFI 304
+P+ K+S+ EV++ L+ + L FS+ G+ ++ + ++
Sbjct: 289 QAVLTVPKLKLSYEGEVTKSLQEMKLQSLFDSPDFSKITGKPIKLTQ------VEHRAGF 342
Query: 305 EVKEEGTEXXXXXXXVITLKSLPRFDKIDFVADHPFIFMIREDATGVVL 353
E E+G + P +D+ + PFIF++R+ TG +L
Sbjct: 343 EWNEDGAGTTPSPGLQPAHLTFP----LDYHLNQPFIFVLRDTDTGALL 387
>pdb|2OAY|A Chain A, Crystal Structure Of Latent Human C1-Inhibitor
Length = 390
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 114/268 (42%), Gaps = 38/268 (14%)
Query: 99 LSFKNTFKQTVDNIYKASSHQVDFQNKA-VEVSREINFWAEKETNGFIKEVLPPGSVDDS 157
L+ ++TF +Y +S + + A +E+ IN W K TN I +L S+
Sbjct: 120 LAIRDTFVNASRTLYSSSPRVLSNNSDANLEL---INTWVAKNTNNKISRLL--DSLPSD 174
Query: 158 SKLVFANALYFKGVWNEAFDSSKTKEYDFHLLNGGSIKVPFMTSKNK------------- 204
++LV NA+Y W FD KT+ FH N IKVP M SK
Sbjct: 175 TRLVLLNAIYLSAKWKTTFDPKKTRMEPFHFKN-SVIKVPMMNSKKYPVAHFIDQTLKAK 233
Query: 205 --QLVTAFDGFKVLVLPYKQDELPALEKKTGSQSGFLKDHIPYEMIEVGDFR-----IPR 257
QL + + V+++P Q+ LE + S + I E +E+ F+ +PR
Sbjct: 234 VGQLQLSHNLSLVILVP--QNLKHRLEDMEQALSPSVFKAI-MEKLEMSKFQPTLLTLPR 290
Query: 258 FKISFGIEVSRVLKALGLV-LSFSRKGGRLTEMVDSHVGVGIFQKSFIEVKEEGTEXXXX 316
K++ ++ +++ L S+ LTE D V + ++ +E+ E G E
Sbjct: 291 IKVTTSQDMLSIMEKLEFFDFSYDLNLCGLTEDPDLQVS-AMQHQTVLELTETGVEAAAA 349
Query: 317 XXXVITLKSLPRFDKIDFVADHPFIFMI 344
+ ++L + F PF+FM+
Sbjct: 350 SAISVA-RTL-----LVFEVQQPFLFML 371
>pdb|2CEO|A Chain A, Thyroxine-Binding Globulin Complex With Thyroxine
pdb|2CEO|B Chain B, Thyroxine-Binding Globulin Complex With Thyroxine
Length = 379
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 78/356 (21%), Positives = 147/356 (41%), Gaps = 48/356 (13%)
Query: 30 SPLSIHVLLSMIAAGSKGPTXXXXXXXXXXXXNE------QQNFASELVAIVFADGSANG 83
SP+SI L M++ G+ T + Q F + ++ F
Sbjct: 33 SPVSISAALVMLSFGACCSTQTEIVETLGFNLTDTPMVEIQHGFQHLICSLNFPKKEL-- 90
Query: 84 GPRLSVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDFQNKAVEVSREINFWAEKETNG 143
L + N ++I + L F V +Y+ DF N + +EIN E +T G
Sbjct: 91 --ELQIGNALFIGKHLKPLAKFLNDVKTLYETEVFSTDFSNISA-AKQEINSHVEMQTKG 147
Query: 144 ----FIKEVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTKEYDFHLLN-GGSIKVPF 198
I+++ P ++ +V N ++FK W FD SKT++ L++ +++VP
Sbjct: 148 KVVGLIQDLKP------NTIMVLVNYIHFKAQWANPFDPSKTEDSSSFLIDKTTTVQVPM 201
Query: 199 MTSKNK--------------QLVTAFDGFKVLVLPYKQDELPALEKKTGSQSGFLKDHIP 244
M + Q+ + + + VLP K+ ++ ++E S++ LK
Sbjct: 202 MHQMEQYYHLVDMELNCTVLQMDYSKNALALFVLP-KEGQMESVEAAMSSKT--LKKW-- 256
Query: 245 YEMIEVG--DFRIPRFKISFGIEVSRVLKALGLVLSFSRKG--GRLTEMVDSHVGV-GIF 299
+++ G D +P+F IS ++ L +G+ ++S LTE D+ + +
Sbjct: 257 NRLLQKGWVDLFVPKFSISATYDLGATLLKMGIQHAYSENADFSGLTE--DNGLKLSNAA 314
Query: 300 QKSFIEVKEEGTEXXXXXXXVITLKSLPRFDKIDFVADHPFIFMIREDATGVVLSL 355
K+ + + E+GTE ++ + F D F+ +I E +T +L L
Sbjct: 315 HKAVLHIGEKGTEAAAVPEVELSDQPENTFLHPIIQIDRSFMLLILERSTRSILFL 370
>pdb|2XN6|A Chain A, Crystal Structure Of Thyroxine-Binding Globulin Complexed
With Thyroxine-Fluoresein
Length = 350
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 121/267 (45%), Gaps = 42/267 (15%)
Query: 86 RLSVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDFQNKAVEVSREINFWAEKETNG-- 143
L + N ++I + L F V +Y+ DF N + +EIN E +T G
Sbjct: 96 ELQIGNALFIGKHLKPLAKFLNDVKTLYETEVFSTDFSNISA-AKQEINSHVEMQTKGKV 154
Query: 144 --FIKEVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTKEYDFHLLN-GGSIKVPFMT 200
I+++ P ++ +V N ++FK W FD SKT++ L++ +++VP M
Sbjct: 155 VGLIQDLKP------NTIMVLVNYIHFKAQWANPFDPSKTEDSSSFLIDKTTTVQVPMMH 208
Query: 201 SKNK--------------QLVTAFDGFKVLVLPYKQDELPALEKKTGSQSGFLKDHIPYE 246
++ Q+ + + + VLP K+ ++ ++E S++ LK
Sbjct: 209 QMDQYYHLVDMELNCTVLQMDYSKNALALFVLP-KEGQMESVEAAMSSKT--LKKW--NR 263
Query: 247 MIEVG--DFRIPRFKISFGIEVSRVLKALGLVLSFSRKG--GRLTEMVDSHVGV-GIFQK 301
+++ G D +P+F IS ++ L +G+ ++S LTE D+ + + K
Sbjct: 264 LLQKGWVDLFVPKFSISATYDLGATLLKMGIQHAYSENADFSGLTE--DNGLKLSNAAHK 321
Query: 302 SFIEVKEEGTEXXXXXXXVITLKSLPR 328
+ + + E+GTE + L+++PR
Sbjct: 322 AVLHIGEKGTE----AAGAMFLEAIPR 344
>pdb|2XN5|A Chain A, Crystal Structure Of Thyroxine-Binding Globulin Complexed
With Furosemide
pdb|2XN7|A Chain A, Crystal Structure Of Thyroxine-Binding Globulin Complexed
With Thyroxine-Fluoresein (T405-Cf)
Length = 350
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 120/267 (44%), Gaps = 42/267 (15%)
Query: 86 RLSVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDFQNKAVEVSREINFWAEKETNG-- 143
L + N ++I + L F V +Y+ DF N + +EIN E +T G
Sbjct: 96 ELQIGNALFIGKHLKPLAKFLNDVKTLYETEVFSTDFSNISA-AKQEINSHVEMQTKGKV 154
Query: 144 --FIKEVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTKEYDFHLLN-GGSIKVPFMT 200
I+++ P ++ +V N ++FK W FD SKT++ L++ +++VP M
Sbjct: 155 VGLIQDLKP------NTIMVLVNYIHFKAQWANPFDPSKTEDSSSFLIDKTTTVQVPMMH 208
Query: 201 SKNK--------------QLVTAFDGFKVLVLPYKQDELPALEKKTGSQSGFLKDHIPYE 246
+ Q+ + + + VLP K+ ++ ++E S++ LK
Sbjct: 209 QMEQYYHLVDMELNCTVLQMDYSKNALALFVLP-KEGQMESVEAAMSSKT--LKKW--NR 263
Query: 247 MIEVG--DFRIPRFKISFGIEVSRVLKALGLVLSFSRKG--GRLTEMVDSHVGV-GIFQK 301
+++ G D +P+F IS ++ L +G+ ++S LTE D+ + + K
Sbjct: 264 LLQKGWVDLFVPKFSISATYDLGATLLKMGIQHAYSENADFSGLTE--DNGLKLSNAAHK 321
Query: 302 SFIEVKEEGTEXXXXXXXVITLKSLPR 328
+ + + E+GTE + L+++PR
Sbjct: 322 AVLHIGEKGTE----AAGAMFLEAIPR 344
>pdb|2RIV|A Chain A, Crystal Structure Of The Reactive Loop Cleaved Human
Thyroxine Binding Globulin
pdb|2XN3|A Chain A, Crystal Structure Of Thyroxine-Binding Globulin Complexed
With Mefenamic Acid
Length = 343
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 120/267 (44%), Gaps = 42/267 (15%)
Query: 86 RLSVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDFQNKAVEVSREINFWAEKETNG-- 143
L + N ++I + L F V +Y+ DF N + +EIN E +T G
Sbjct: 95 ELQIGNALFIGKHLKPLAKFLNDVKTLYETEVFSTDFSNISA-AKQEINSHVEMQTKGKV 153
Query: 144 --FIKEVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTKEYDFHLLN-GGSIKVPFMT 200
I+++ P ++ +V N ++FK W FD SKT++ L++ +++VP M
Sbjct: 154 VGLIQDLKP------NTIMVLVNYIHFKAQWANPFDPSKTEDSSSFLIDKTTTVQVPMMH 207
Query: 201 SKNK--------------QLVTAFDGFKVLVLPYKQDELPALEKKTGSQSGFLKDHIPYE 246
+ Q+ + + + VLP K+ ++ ++E S++ LK
Sbjct: 208 QMEQYYHLVDMELNCTVLQMDYSKNALALFVLP-KEGQMESVEAAMSSKT--LKKW--NR 262
Query: 247 MIEVG--DFRIPRFKISFGIEVSRVLKALGLVLSFSRKG--GRLTEMVDSHVGV-GIFQK 301
+++ G D +P+F IS ++ L +G+ ++S LTE D+ + + K
Sbjct: 263 LLQKGWVDLFVPKFSISATYDLGATLLKMGIQHAYSENADFSGLTE--DNGLKLSNAAHK 320
Query: 302 SFIEVKEEGTEXXXXXXXVITLKSLPR 328
+ + + E+GTE + L+++PR
Sbjct: 321 AVLHIGEKGTE----AAGAMFLEAIPR 343
>pdb|2RIW|A Chain A, The Reactive Loop Cleaved Human Thyroxine Binding Globulin
Complexed With Thyroxine
Length = 338
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 73/329 (22%), Positives = 139/329 (42%), Gaps = 52/329 (15%)
Query: 30 SPLSIHVLLSMIAAGSKGPTXXXXXXXXXXXXNE------QQNFASELVAIVFADGSANG 83
SP+SI L M++ G+ T + Q F + ++ F
Sbjct: 32 SPVSISAALVMLSFGACCSTQTEIVETLGFNLTDTPMVEIQHGFQHLICSLNFPKKEL-- 89
Query: 84 GPRLSVANGVWIDQSLSFKNTFKQTVDNIYKASSHQVDFQNKAVEVSREINFWAEKETNG 143
L + N ++I + L F V +Y+ DF N + +EIN E +T G
Sbjct: 90 --ELQIGNALFIGKHLKPLAKFLNDVKTLYETEVFSTDFSNISA-AKQEINSHVEMQTKG 146
Query: 144 ----FIKEVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTKEYDFHLLN-GGSIKVPF 198
I+++ P ++ +V N ++FK W FD SKT++ L++ +++VP
Sbjct: 147 KVVGLIQDLKP------NTIMVLVNYIHFKAQWANPFDPSKTEDSSSFLIDKTTTVQVPM 200
Query: 199 MTSKNK--------------QLVTAFDGFKVLVLPYKQDELPALEKKTGSQSGFLKDHIP 244
M + Q+ + + + VLP K+ ++ ++E S++ LK
Sbjct: 201 MHQMEQYYHLVDMELNCTVLQMDYSKNALALFVLP-KEGQMESVEAAMSSKT--LKKW-- 255
Query: 245 YEMIEVG--DFRIPRFKISFGIEVSRVLKALGLVLSFSRKG--GRLTEMVDSHVGV-GIF 299
+++ G D +P+F IS ++ L +G+ ++S LTE D+ + +
Sbjct: 256 NRLLQKGWVDLFVPKFSISATYDLGATLLKMGIQHAYSENADFSGLTE--DNGLKLSNAA 313
Query: 300 QKSFIEVKEEGTEXXXXXXXVITLKSLPR 328
K+ + + E+GTE + L+++PR
Sbjct: 314 HKAVLHIGEKGTE----AAGAMFLEAIPR 338
>pdb|4AU3|A Chain A, Crystal Structure Of A Hsp47-Collagen Complex
pdb|4AU3|C Chain C, Crystal Structure Of A Hsp47-Collagen Complex
pdb|4AU3|D Chain D, Crystal Structure Of A Hsp47-Collagen Complex
Length = 392
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/277 (22%), Positives = 109/277 (39%), Gaps = 35/277 (12%)
Query: 98 SLSFKNTFKQTVDNIYKASSHQVDFQNKAVEVSREINFWAEKETNGFIKEVLPPGSVDDS 157
S+SF F ++ Y +++F++K + + IN WA + T+G + EV D
Sbjct: 105 SVSFAEDFVRSSKQHYNCEHSKINFRDKRSAL-QSINEWAAQTTDGKLPEVTKDVERTDG 163
Query: 158 SKLVFANALYFKGVWNEAFDSSKTKEYDFHLLNGGSIKVPFMTSKNKQLVTAFDGFK--- 214
+ LV NA +FK W+E F F + S V L +D K
Sbjct: 164 ALLV--NAXFFKPHWDEKFHHKXVDNRGFXVTR--SYTVGVTXXHRTGLYNYYDDEKEKL 219
Query: 215 --------------VLVLPYKQDELPALEKK-TGSQSGFLKDHIPYEMIEVGDFRIPRFK 259
+++ P+ + L LEK T Q + + + +P+
Sbjct: 220 QIVEXPLAHKLSSLIILXPHHVEPLERLEKLLTKEQLKIWXGKXQKKAVAIS---LPKGV 276
Query: 260 ISFGIEVSRVLKALGLVLSFSRKGGRLTEMV---DSHVGVGIFQKSFIEVKEEGTEXXXX 316
+ ++ + L LGL + + L+ D ++ +F + E EG
Sbjct: 277 VEVTHDLQKHLAGLGLTEAIDKNKADLSRXSGKKDLYLA-SVFHATAFEWDTEGNPFDQD 335
Query: 317 XXXVITLKSLPRFDKIDFVADHPFIFMIREDATGVVL 353
L+S P+ F ADHPFIF++R+ +G +L
Sbjct: 336 IYGREELRS-PKL----FYADHPFIFLVRDTQSGSLL 367
>pdb|4AU3|B Chain B, Crystal Structure Of A Hsp47-Collagen Complex
Length = 392
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/277 (22%), Positives = 109/277 (39%), Gaps = 35/277 (12%)
Query: 98 SLSFKNTFKQTVDNIYKASSHQVDFQNKAVEVSREINFWAEKETNGFIKEVLPPGSVDDS 157
S+SF F ++ Y +++F++K + + IN WA + T+G + EV D
Sbjct: 105 SVSFAEDFVRSSKQHYNCEHSKINFRDKRSAL-QSINEWAAQTTDGKLPEVTKDVERTDG 163
Query: 158 SKLVFANALYFKGVWNEAFDSSKTKEYDFHLLNGGSIKVPFMTSKNKQLVTAFDGFK--- 214
+ LV NA +FK W+E F F + S V L +D K
Sbjct: 164 ALLV--NAXFFKPHWDEKFHHKXVDNRGFXVTR--SYTVGVTXXHRTGLYNYYDDEKEKL 219
Query: 215 --------------VLVLPYKQDELPALEKK-TGSQSGFLKDHIPYEMIEVGDFRIPRFK 259
+++ P+ + L LEK T Q + + + +P+
Sbjct: 220 QIVEXPLAHKLSSLIILXPHHVEPLERLEKLLTKEQLKIWXGKXQKKAVAIS---LPKGV 276
Query: 260 ISFGIEVSRVLKALGLVLSFSRKGGRLTEMV---DSHVGVGIFQKSFIEVKEEGTEXXXX 316
+ ++ + L LGL + + L+ D ++ +F + E EG
Sbjct: 277 VEVTHDLQKHLAGLGLTEAIDKNKSDLSRXSGKKDLYLA-SVFHATAFEWDTEGNPFDQD 335
Query: 317 XXXVITLKSLPRFDKIDFVADHPFIFMIREDATGVVL 353
L+S P+ F ADHPFIF++R+ +G +L
Sbjct: 336 IYGREELRS-PKL----FYADHPFIFLVRDTQSGSLL 367
>pdb|1HLE|B Chain B, Crystal Structure Of Cleaved Equine Leucocyte Elastase
Inhibitor Determined At 1.95 Angstroms Resolution
Length = 31
Score = 30.8 bits (68), Expect = 1.4, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 333 DFVADHPFIFMIREDATGVVLSLVMFS 359
+F ADHPFIF IR + + +L L FS
Sbjct: 3 NFNADHPFIFFIRHNPSANILFLGRFS 29
>pdb|3F02|C Chain C, Cleaved Human Neuroserpin
pdb|3F02|D Chain D, Cleaved Human Neuroserpin
Length = 48
Score = 29.3 bits (64), Expect = 4.3, Method: Composition-based stats.
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 335 VADHPFIFMIREDATGVVL 353
+ DHPF F+IR TG +L
Sbjct: 9 IVDHPFFFLIRNRRTGTIL 27
>pdb|1VIV|A Chain A, Crystal Structure Of A Hypothetical Protein
pdb|1VIV|B Chain B, Crystal Structure Of A Hypothetical Protein
Length = 197
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 29/54 (53%)
Query: 140 ETNGFIKEVLPPGSVDDSSKLVFANALYFKGVWNEAFDSSKTKEYDFHLLNGGS 193
++NG K + P GS+ + + L+F +A+ K + + DS + +L GGS
Sbjct: 138 QSNGSYKTIQPMGSLFEQTLLLFYDAVILKLMEKKGLDSETMFTHHANLEEGGS 191
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,781,747
Number of Sequences: 62578
Number of extensions: 371543
Number of successful extensions: 1152
Number of sequences better than 100.0: 120
Number of HSP's better than 100.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 827
Number of HSP's gapped (non-prelim): 126
length of query: 375
length of database: 14,973,337
effective HSP length: 100
effective length of query: 275
effective length of database: 8,715,537
effective search space: 2396772675
effective search space used: 2396772675
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)