BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036500
         (292 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2O2C|A Chain A, Crystal Structure Of Phosphoglucose Isomerase From T.
           Brucei Containing Glucose-6-Phosphate In The Active Site
 pdb|2O2C|B Chain B, Crystal Structure Of Phosphoglucose Isomerase From T.
           Brucei Containing Glucose-6-Phosphate In The Active Site
 pdb|2O2C|C Chain C, Crystal Structure Of Phosphoglucose Isomerase From T.
           Brucei Containing Glucose-6-Phosphate In The Active Site
 pdb|2O2D|A Chain A, Crystal Structure Of Phosphoglucose Isomerase From
           Trypanosoma Brucei Complexed With Citrate
 pdb|2O2D|B Chain B, Crystal Structure Of Phosphoglucose Isomerase From
           Trypanosoma Brucei Complexed With Citrate
 pdb|2O2D|C Chain C, Crystal Structure Of Phosphoglucose Isomerase From
           Trypanosoma Brucei Complexed With Citrate
          Length = 613

 Score = 30.8 bits (68), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 17/58 (29%), Positives = 30/58 (51%)

Query: 92  NKKGLKNFEIDGKRAFVYWDFRQAKFSSNPAPSSDYYVAIVYEDEIVLLLGDSLNDAY 149
           N + +K F ID +  F +WD+   ++S   A      ++I YE+ + LL G  + D +
Sbjct: 302 NNQKVKEFGIDEENMFQFWDWVGGRYSMWSAIGLPIMISIGYENFVELLTGAHVIDEH 359


>pdb|3PCT|A Chain A, Structure Of The Class C Acid Phosphatase From Pasteurella
           Multocida
 pdb|3PCT|B Chain B, Structure Of The Class C Acid Phosphatase From Pasteurella
           Multocida
 pdb|3PCT|C Chain C, Structure Of The Class C Acid Phosphatase From Pasteurella
           Multocida
          Length = 260

 Score = 30.0 bits (66), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 14/42 (33%), Positives = 20/42 (47%)

Query: 136 EIVLLLGDSLNDAYKRTKKRPTFPEATLLCKKQNVYGKKLFC 177
           +IVL +GD+LND    T K+        + K    +GKK   
Sbjct: 174 DIVLFVGDNLNDFGDATYKKSNAERRDFVAKNSKAFGKKFIV 215


>pdb|2VEQ|A Chain A, Insights Into Kinetochore-Dna Interactions From The
           Structure Of Cep3p
          Length = 565

 Score = 28.9 bits (63), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 4/27 (14%)

Query: 85  LKASQFWNKKGLKNFEIDGKRAFVYWD 111
           L+  Q+W+++  KN  +DGK    YWD
Sbjct: 95  LRVEQYWDRRADKNHSVDGK----YWD 117


>pdb|2QUQ|A Chain A, Crystal Structure Of The Essential Inner Kinetochore
           Protein Cep3p
          Length = 562

 Score = 28.9 bits (63), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 4/27 (14%)

Query: 85  LKASQFWNKKGLKNFEIDGKRAFVYWD 111
           L+  Q+W+++  KN  +DGK    YWD
Sbjct: 92  LRVEQYWDRRADKNHSVDGK----YWD 114


>pdb|3QEJ|A Chain A, S74e-Dck Mutant In Complex With Udp
 pdb|3QEJ|B Chain B, S74e-Dck Mutant In Complex With Udp
 pdb|3QEN|A Chain A, S74e Dck In Complex With 5-Bromodeoxycytidine And Udp
 pdb|3QEN|B Chain B, S74e Dck In Complex With 5-Bromodeoxycytidine And Udp
          Length = 279

 Score = 28.5 bits (62), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 18/30 (60%)

Query: 228 ETISMNDTSIQIYWDVHDWLFNESSPSYGL 257
           E+ SMN+T   IY D HDW+ N+   S  L
Sbjct: 162 ESESMNETEWTIYQDWHDWMNNQFGQSLEL 191


>pdb|3QEO|A Chain A, S74e-R104m-D133a Dck Variant In Complex With
           L-Deoxythymidine And Udp
 pdb|3QEO|B Chain B, S74e-R104m-D133a Dck Variant In Complex With
           L-Deoxythymidine And Udp
          Length = 279

 Score = 28.5 bits (62), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 18/30 (60%)

Query: 228 ETISMNDTSIQIYWDVHDWLFNESSPSYGL 257
           E+ SMN+T   IY D HDW+ N+   S  L
Sbjct: 162 ESESMNETEWTIYQDWHDWMNNQFGQSLEL 191


>pdb|2ZI4|A Chain A, C4s Dck Variant Of Dck In Complex With L-Da+adp
 pdb|2ZI5|A Chain A, C4s Dck Variant Of Dck In Complex With L-Da+udp
 pdb|2ZI5|B Chain B, C4s Dck Variant Of Dck In Complex With L-Da+udp
 pdb|2ZI5|C Chain C, C4s Dck Variant Of Dck In Complex With L-Da+udp
 pdb|2ZI5|D Chain D, C4s Dck Variant Of Dck In Complex With L-Da+udp
 pdb|2ZI6|A Chain A, C4s Dck Variant Of Dck In Complex With D-Da+udp
 pdb|2ZI6|B Chain B, C4s Dck Variant Of Dck In Complex With D-Da+udp
 pdb|2ZI6|C Chain C, C4s Dck Variant Of Dck In Complex With D-Da+udp
 pdb|2ZI6|D Chain D, C4s Dck Variant Of Dck In Complex With D-Da+udp
 pdb|2ZI7|B Chain B, C4s Dck Variant Of Dck In Complex With D-Dg+udp
 pdb|2ZI7|A Chain A, C4s Dck Variant Of Dck In Complex With D-Dg+udp
 pdb|2ZIA|A Chain A, C4s Dck Variant Of Dck In Complex With Cladribine+udp
 pdb|2ZIA|B Chain B, C4s Dck Variant Of Dck In Complex With Cladribine+udp
 pdb|3MJR|A Chain A, Human Dck Complex With Acyclic Nucleoside
 pdb|3MJR|B Chain B, Human Dck Complex With Acyclic Nucleoside
 pdb|3MJR|C Chain C, Human Dck Complex With Acyclic Nucleoside
 pdb|3MJR|D Chain D, Human Dck Complex With Acyclic Nucleoside
 pdb|3KFX|A Chain A, Human Dck Complex With 5-Me Dc And Adp
 pdb|3KFX|B Chain B, Human Dck Complex With 5-Me Dc And Adp
          Length = 279

 Score = 28.5 bits (62), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 18/30 (60%)

Query: 228 ETISMNDTSIQIYWDVHDWLFNESSPSYGL 257
           E+ SMN+T   IY D HDW+ N+   S  L
Sbjct: 162 ESESMNETEWTIYQDWHDWMNNQFGQSLEL 191


>pdb|2NO9|A Chain A, The Structure Of Deoxycytidine Kinase Complexed With
           Troxacitabine And Adp.
 pdb|2NO9|B Chain B, The Structure Of Deoxycytidine Kinase Complexed With
           Troxacitabine And Adp.
 pdb|2NOA|A Chain A, The Structure Of Deoxycytidine Kinase Complexed With
           Lamivudine And Adp.
 pdb|2NOA|B Chain B, The Structure Of Deoxycytidine Kinase Complexed With
           Lamivudine And Adp.
 pdb|2NO0|A Chain A, C4s Dck Variant Of Dck In Complex With Gemcitabine+adp
 pdb|2NO0|B Chain B, C4s Dck Variant Of Dck In Complex With Gemcitabine+adp
 pdb|2NO1|A Chain A, C4s Dck Variant Of Dck In Complex With D-Dc+adp
 pdb|2NO1|B Chain B, C4s Dck Variant Of Dck In Complex With D-Dc+adp
 pdb|2NO6|A Chain A, C4s Dck Variant Of Dck In Complex With Ftc+adp
 pdb|2NO6|B Chain B, C4s Dck Variant Of Dck In Complex With Ftc+adp
 pdb|2NO7|A Chain A, C4s Dck Variant Of Dck In Complex With L-dc+adp
 pdb|2NO7|B Chain B, C4s Dck Variant Of Dck In Complex With L-dc+adp
          Length = 280

 Score = 28.5 bits (62), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 18/30 (60%)

Query: 228 ETISMNDTSIQIYWDVHDWLFNESSPSYGL 257
           E+ SMN+T   IY D HDW+ N+   S  L
Sbjct: 163 ESESMNETEWTIYQDWHDWMNNQFGQSLEL 192


>pdb|2ZI3|A Chain A, C4s-E247a Dck Variant Of Dck In Complex With D-Da+adp
 pdb|2ZI3|B Chain B, C4s-E247a Dck Variant Of Dck In Complex With D-Da+adp
 pdb|2ZI9|A Chain A, C4s-E247a Dck Variant Of Dck In Complex With
           Cladribine+adp
 pdb|2ZI9|B Chain B, C4s-E247a Dck Variant Of Dck In Complex With
           Cladribine+adp
          Length = 279

 Score = 28.5 bits (62), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 18/30 (60%)

Query: 228 ETISMNDTSIQIYWDVHDWLFNESSPSYGL 257
           E+ SMN+T   IY D HDW+ N+   S  L
Sbjct: 162 ESESMNETEWTIYQDWHDWMNNQFGQSLEL 191


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.137    0.436 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,961,951
Number of Sequences: 62578
Number of extensions: 432639
Number of successful extensions: 745
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 732
Number of HSP's gapped (non-prelim): 15
length of query: 292
length of database: 14,973,337
effective HSP length: 98
effective length of query: 194
effective length of database: 8,840,693
effective search space: 1715094442
effective search space used: 1715094442
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)