BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036500
         (292 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q60393|BXG_CLOBO Botulinum neurotoxin type G OS=Clostridium botulinum GN=botG PE=1
           SV=2
          Length = 1297

 Score = 35.0 bits (79), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 46/118 (38%), Gaps = 17/118 (14%)

Query: 60  LVNHYLCFNVENPYDDQHPYTFKTDLKASQFWNKKGLKNFEIDGKRAFVYWDFRQAKFSS 119
           ++++ L   ++ P ++  P+T   D+    +  +  LK   +DG   F Y       F S
Sbjct: 496 ILDNDLSSGIDLPNENTEPFTNFDDIDIPVYIKQSALKKIFVDGDSLFEY--LHAQTFPS 553

Query: 120 NPAPSSDYYVAIVYEDEIVLLLGDSLNDAYKRTKKRPTFPEATLLCKKQNVYGKKLFC 177
           N                  L L +SLNDA +   K  TF    L+ K   V G  LF 
Sbjct: 554 NIEN---------------LQLTNSLNDALRNNNKVYTFFSTNLVEKANTVVGASLFV 596


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.137    0.436 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 120,924,886
Number of Sequences: 539616
Number of extensions: 5115414
Number of successful extensions: 9314
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 9313
Number of HSP's gapped (non-prelim): 3
length of query: 292
length of database: 191,569,459
effective HSP length: 116
effective length of query: 176
effective length of database: 128,974,003
effective search space: 22699424528
effective search space used: 22699424528
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)