Query 036500
Match_columns 292
No_of_seqs 112 out of 139
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 02:41:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036500.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036500hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05910 DUF868: Plant protein 100.0 3E-118 7E-123 828.6 32.5 260 31-291 1-274 (274)
2 cd00110 LamG Laminin G domain; 88.2 6.2 0.00014 31.6 9.5 81 124-236 45-127 (151)
3 PF05910 DUF868: Plant protein 86.9 3.7 8.1E-05 39.5 8.6 34 88-121 190-223 (274)
4 PF02210 Laminin_G_2: Laminin 67.0 21 0.00046 27.4 6.0 48 184-236 52-102 (128)
5 PF14099 Polysacc_lyase: Polys 66.8 9 0.0002 33.8 4.4 37 183-219 149-185 (224)
6 COG0139 HisI Phosphoribosyl-AM 58.1 29 0.00064 29.5 5.6 73 125-210 16-91 (111)
7 smart00282 LamG Laminin G doma 51.2 1.2E+02 0.0027 24.0 8.9 29 184-217 60-88 (135)
8 PRK00051 hisI phosphoribosyl-A 50.2 63 0.0014 28.0 6.5 32 125-156 12-45 (125)
9 PF06905 FAIM1: Fas apoptotic 48.6 87 0.0019 28.4 7.5 42 185-233 14-58 (177)
10 PF06439 DUF1080: Domain of Un 43.0 58 0.0013 27.3 5.2 36 183-223 124-159 (185)
11 PF05506 DUF756: Domain of unk 42.3 1.1E+02 0.0024 23.6 6.4 35 214-248 35-73 (89)
12 PF05506 DUF756: Domain of unk 39.3 1E+02 0.0022 23.8 5.7 19 94-112 46-65 (89)
13 KOG0273 Beta-transducin family 33.3 38 0.00082 35.3 3.0 43 202-244 256-306 (524)
14 TIGR02148 Fibro_Slime fibro-sl 31.7 43 0.00094 27.5 2.5 20 201-220 26-45 (90)
15 PLN02313 Pectinesterase/pectin 28.9 6.1E+02 0.013 27.0 11.0 59 187-249 365-429 (587)
16 cd04985 IgC_CH1 CH1 domain (fi 28.6 66 0.0014 25.5 3.1 19 43-61 23-42 (95)
17 KOG2463 Predicted RNA-binding 25.9 49 0.0011 33.2 2.3 24 206-229 274-298 (376)
18 KOG0289 mRNA splicing factor [ 23.2 94 0.002 32.4 3.7 38 108-146 372-420 (506)
19 PF12101 DUF3577: Protein of u 23.1 1.9E+02 0.0041 25.4 5.1 13 205-217 117-129 (137)
20 PRK02759 bifunctional phosphor 21.4 2.8E+02 0.0061 25.8 6.2 57 126-196 15-80 (203)
21 smart00210 TSPN Thrombospondin 21.4 1.5E+02 0.0032 25.9 4.2 44 184-235 115-158 (184)
22 PLN02346 histidine biosynthesi 20.8 2.3E+02 0.0051 27.5 5.7 31 126-156 53-85 (271)
23 PF03628 PapG_C: PapG chaperon 20.4 75 0.0016 27.0 2.0 28 205-233 55-82 (108)
24 PF00054 Laminin_G_1: Laminin 20.4 4.7E+02 0.01 21.2 10.4 49 183-236 50-101 (131)
No 1
>PF05910 DUF868: Plant protein of unknown function (DUF868); InterPro: IPR008586 This family consists of several hypothetical proteins from plants. The function of this family is unknown.
Probab=100.00 E-value=3.5e-118 Score=828.55 Aligned_cols=260 Identities=43% Similarity=0.779 Sum_probs=241.3
Q ss_pred CCCcceEEEEEEeEecCeeeEEEEEeecccCCceeEEEEcCCCCCCCCceeeeccccccceeecceeeEEECCeeEEEEe
Q 036500 31 KASQSWLILIYQAKIADFFRKITVTWSKNLVNHYLCFNVENPYDDQHPYTFKTDLKASQFWNKKGLKNFEIDGKRAFVYW 110 (292)
Q Consensus 31 ~s~q~~vT~vY~~~L~~~~~litvTWsk~l~g~~Lsv~v~~~~~~~~~~~~k~~~kpw~fwkkkGsK~f~~~~~~V~v~W 110 (292)
+++||+|||||||+|++++++||||||||+|||+|+|+|+++.++.+ ++||++++||+||||||||+|+++|++|+|||
T Consensus 1 ~s~q~~vT~vY~~~l~g~~~litvTWsk~~~g~~Lsv~v~~~~~~~~-~~~k~~~~p~~fwkkkGsKsf~~~~~~v~v~W 79 (274)
T PF05910_consen 1 PSPQNSVTCVYQTKLSGKPRLITVTWSKNLLGQSLSVSVDDASGSSS-SSCKVDLKPWLFWKKKGSKSFEVDGPKVDVFW 79 (274)
T ss_pred CCCCceEEEEEEEEecCCceEEEEEEeCCccCCeEEEEEeCcccccc-ccccccCccceeEecCCccccccCCceEEEEe
Confidence 58999999999999999999999999999999999999999876554 89999999999999999999999999999999
Q ss_pred cCCccccCCCCCCCCCcEEEEEECCeEEEEecCcchhHhhhhcCCCCCCceeeEEEEEEEeeeeEEEeeEEecCCCeeEE
Q 036500 111 DFRQAKFSSNPAPSSDYYVAIVYEDEIVLLLGDSLNDAYKRTKKRPTFPEATLLCKKQNVYGKKLFCTRALLGDGKEEHD 190 (292)
Q Consensus 111 DLs~Akf~~~PEP~sgfYVaVV~d~EvvLlLGDl~~ea~~k~~~~~~~~~a~LvsRrEhv~G~~~~~TkA~F~~~g~eHe 190 (292)
|||+|||+++|||++|||||||+|+|||||||||++|||+|++++|+..+++||||||||||++.|+|||||+|+|++||
T Consensus 80 DLs~Akf~s~PEP~sgfYVavv~d~EvvLllGDl~~ea~~rt~~~~~~~~~~LvsRrEhv~G~~~~~Tka~F~e~G~~He 159 (274)
T PF05910_consen 80 DLSSAKFGSGPEPVSGFYVAVVVDGEVVLLLGDLKKEAYKRTKSRPSPSEAVLVSRREHVFGKKVYSTKARFCEGGKEHE 159 (274)
T ss_pred CccccccCCCCCCCCccEEEEEECCEEEEEecCchhHHHhhccCCCCccceeEEEEEEEEEEEEEEeeEEEEcCCCcEEE
Confidence 99999999999999999999999999999999999999999999999899999999999999999999999999999999
Q ss_pred EEEEe--ccCCCCCCcEEEEEcCeEEEEEeeeccccccceEEEeCCcEEEEEEEeeccccC-CCCCceeEEEEecCCCcc
Q 036500 191 IVIEN--SLFGPGDPEMWISIDGIWTIRILNLNWRFRGNETISMNDTSIQIYWDVHDWLFN-ESSPSYGLFIFKPNTIEC 267 (292)
Q Consensus 191 I~Iec--~~~G~~dp~l~V~VDgk~v~qVkrL~WkFRGNetI~vdg~~V~V~WDVHdWlF~-~~~~g~AVFmFr~~~~~~ 267 (292)
|+||| ..+|.+||+|||+||||+|||||||||||||||||+|||+|||||||||||||+ ++++|||||||||+++.+
T Consensus 160 I~Iec~~~~~g~~dp~l~V~VDgk~v~~VkrL~WkFRGNqti~vdg~~V~V~WDVHdWlF~~~~~~~~AVFmFr~~~~~e 239 (274)
T PF05910_consen 160 ISIECGGETGGPKDPELWVSVDGKKVVQVKRLRWKFRGNQTIFVDGLPVQVFWDVHDWLFNNGPGSGHAVFMFRPRSGLE 239 (274)
T ss_pred EEEEEeccCCCCCCceEEEEECCEEEEEEEEeeecccCceEEEECCeEEEEEEEhhhhhhccCCCCCceEEEEEecCCcc
Confidence 99999 557788999999999999999999999999999999999999999999999998 456789999999998643
Q ss_pred ccccC-----------cccCCCCcceEEEEEEEec
Q 036500 268 ASSAN-----------KENDDSIQGFCHVLYALKM 291 (292)
Q Consensus 268 ~~~~~-----------~e~~~~~~~Fsl~lyA~K~ 291 (292)
..... .+.+.++.||||||||||+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~gFsLllyAwK~ 274 (274)
T PF05910_consen 240 SRLWLEESSSSSSSRFSSSSSSGSGFSLLLYAWKN 274 (274)
T ss_pred ccccccccccccccccccccCCCCCEEEEEEEEcC
Confidence 21000 1223357899999999996
No 2
>cd00110 LamG Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules.
Probab=88.23 E-value=6.2 Score=31.61 Aligned_cols=81 Identities=11% Similarity=0.156 Sum_probs=55.4
Q ss_pred CCCcEEEEEECCeEEEEecCcchhHhhhhcCCCCCCceeeEEEEEEEeeeeEEEeeEEecCCCeeEEEEEEeccCCCCCC
Q 036500 124 SSDYYVAIVYEDEIVLLLGDSLNDAYKRTKKRPTFPEATLLCKKQNVYGKKLFCTRALLGDGKEEHDIVIENSLFGPGDP 203 (292)
Q Consensus 124 ~sgfYVaVV~d~EvvLlLGDl~~ea~~k~~~~~~~~~a~LvsRrEhv~G~~~~~TkA~F~~~g~eHeI~Iec~~~G~~dp 203 (292)
...|+.+-+.++.+.+.+....+ . ..+.+..++ ..|+.|.|.|+... .
T Consensus 45 ~~~~~~l~l~~g~l~~~~~~g~~--------------~------------~~~~~~~~v-~dg~Wh~v~i~~~~-----~ 92 (151)
T cd00110 45 GGDFLALELEDGRLVLRYDLGSG--------------S------------LVLSSKTPL-NDGQWHSVSVERNG-----R 92 (151)
T ss_pred CCCEEEEEEECCEEEEEEcCCcc--------------c------------EEEEccCcc-CCCCEEEEEEEECC-----C
Confidence 56677666779998888777411 0 122233333 56789999999873 3
Q ss_pred cEEEEEcCeEEEEEeeecc--ccccceEEEeCCcE
Q 036500 204 EMWISIDGIWTIRILNLNW--RFRGNETISMNDTS 236 (292)
Q Consensus 204 ~l~V~VDgk~v~qVkrL~W--kFRGNetI~vdg~~ 236 (292)
.+.+.|||+.+++...-.. ....+..|++.|.|
T Consensus 93 ~~~l~VD~~~~~~~~~~~~~~~~~~~~~~~iGg~~ 127 (151)
T cd00110 93 SVTLSVDGERVVESGSPGGSALLNLDGPLYLGGLP 127 (151)
T ss_pred EEEEEECCccEEeeeCCCCceeecCCCCeEEcCCC
Confidence 7999999997777655444 36677778888875
No 3
>PF05910 DUF868: Plant protein of unknown function (DUF868); InterPro: IPR008586 This family consists of several hypothetical proteins from plants. The function of this family is unknown.
Probab=86.89 E-value=3.7 Score=39.50 Aligned_cols=34 Identities=26% Similarity=0.600 Sum_probs=29.6
Q ss_pred ccceeecceeeEEECCeeEEEEecCCccccCCCC
Q 036500 88 SQFWNKKGLKNFEIDGKRAFVYWDFRQAKFSSNP 121 (292)
Q Consensus 88 w~fwkkkGsK~f~~~~~~V~v~WDLs~Akf~~~P 121 (292)
.|=||=||+.++.+||..|+|+||+..==|+++|
T Consensus 190 rL~WkFRGNqti~vdg~~V~V~WDVHdWlF~~~~ 223 (274)
T PF05910_consen 190 RLRWKFRGNQTIFVDGLPVQVFWDVHDWLFNNGP 223 (274)
T ss_pred EeeecccCceEEEECCeEEEEEEEhhhhhhccCC
Confidence 4568889999999999999999999998887443
No 4
>PF02210 Laminin_G_2: Laminin G domain; InterPro: IPR012680 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, including a large number of extracellular proteins. The C terminus of the laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions have been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each have five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012679 from INTERPRO).; PDB: 3POY_A 3QCW_B 3R05_B 3ASI_A 3MW4_B 3MW3_A 1QU0_D 1DYK_A 1OKQ_A 3SH4_A ....
Probab=67.03 E-value=21 Score=27.42 Aligned_cols=48 Identities=8% Similarity=0.027 Sum_probs=36.4
Q ss_pred CCCeeEEEEEEeccCCCCCCcEEEEEcCeEEEEEeeeccc--cc-cceEEEeCCcE
Q 036500 184 DGKEEHDIVIENSLFGPGDPEMWISIDGIWTIRILNLNWR--FR-GNETISMNDTS 236 (292)
Q Consensus 184 ~~g~eHeI~Iec~~~G~~dp~l~V~VDgk~v~qVkrL~Wk--FR-GNetI~vdg~~ 236 (292)
..|+.|.|.|.... .++.+.||+....+....... .- ....|++.|.|
T Consensus 52 ~dg~wh~v~i~~~~-----~~~~l~Vd~~~~~~~~~~~~~~~~~~~~~~l~iGg~~ 102 (128)
T PF02210_consen 52 NDGQWHKVSISRDG-----NRVTLTVDGQSVSSESLPSSSSDSLDPDGSLYIGGLP 102 (128)
T ss_dssp TSSSEEEEEEEEET-----TEEEEEETTSEEEEEESSSTTHHCBESEEEEEESSTT
T ss_pred cccceeEEEEEEee-----eeEEEEecCccceEEeccccceecccCCCCEEEeccc
Confidence 66889999998873 369999999999999888775 33 33346677654
No 5
>PF14099 Polysacc_lyase: Polysaccharide lyase; PDB: 3ILR_A 3IKW_A 3INA_A 3IMN_A 3IN9_A 2ZZJ_A.
Probab=66.78 E-value=9 Score=33.81 Aligned_cols=37 Identities=16% Similarity=0.119 Sum_probs=29.2
Q ss_pred cCCCeeEEEEEEeccCCCCCCcEEEEEcCeEEEEEee
Q 036500 183 GDGKEEHDIVIENSLFGPGDPEMWISIDGIWTIRILN 219 (292)
Q Consensus 183 ~~~g~eHeI~Iec~~~G~~dp~l~V~VDgk~v~qVkr 219 (292)
...|+.|+|.|+..-+...+..+.|.+||+.|+..+.
T Consensus 149 ~~~G~W~~~~i~~~~s~~~~G~~~vw~nG~~v~~~~g 185 (224)
T PF14099_consen 149 VERGKWHDFVIHVKWSPDSDGFLEVWLNGKLVVDYKG 185 (224)
T ss_dssp S-TTSEEEEEEEEEE-CCCTEEEEEEECCEECCEEEE
T ss_pred cCCCcEEEEEEEEEECCCCCEEEEEEECCEEEEEEeC
Confidence 3669999999999765457889999999998887653
No 6
>COG0139 HisI Phosphoribosyl-AMP cyclohydrolase [Amino acid transport and metabolism]
Probab=58.11 E-value=29 Score=29.46 Aligned_cols=73 Identities=19% Similarity=0.256 Sum_probs=44.1
Q ss_pred CCcEEEEEECCeE--EEEecCcchhHhhhhcCCCCCCceeeEEEEEEEeeeeEEEeeEEec-CCCeeEEEEEEeccCCCC
Q 036500 125 SDYYVAIVYEDEI--VLLLGDSLNDAYKRTKKRPTFPEATLLCKKQNVYGKKLFCTRALLG-DGKEEHDIVIENSLFGPG 201 (292)
Q Consensus 125 sgfYVaVV~d~Ev--vLlLGDl~~ea~~k~~~~~~~~~a~LvsRrEhv~G~~~~~TkA~F~-~~g~eHeI~Iec~~~G~~ 201 (292)
.|-+.|||-|.+- ||+||=|.+||.+||.... .+...||.-+= .+ +|-.=. .--+-++|.++|+.
T Consensus 16 ~gLvpaIvQd~~t~eVLMlaymN~eAl~kTleTg---~~~y~SRSR~~----lW-~KGetSG~~q~v~~i~~DCD~---- 83 (111)
T COG0139 16 DGLVPAIVQDAETGEVLMLAYMNEEALAKTLETG---EAHYYSRSRQE----LW-TKGETSGHTQKVVEIRLDCDG---- 83 (111)
T ss_pred CCeEEEEEEecCCCcEEEEEecCHHHHHHHHhcC---eEEEEEcchhh----he-ccccccCceEEEEEEEcCCCC----
Confidence 7889999987654 7999999999999986543 24444442210 11 111100 11156789999983
Q ss_pred CCcEEEEEc
Q 036500 202 DPEMWISID 210 (292)
Q Consensus 202 dp~l~V~VD 210 (292)
..|.+.|+
T Consensus 84 -Dall~~V~ 91 (111)
T COG0139 84 -DALLLLVE 91 (111)
T ss_pred -CEEEEEEE
Confidence 24555554
No 7
>smart00282 LamG Laminin G domain.
Probab=51.24 E-value=1.2e+02 Score=24.05 Aligned_cols=29 Identities=17% Similarity=0.234 Sum_probs=22.2
Q ss_pred CCCeeEEEEEEeccCCCCCCcEEEEEcCeEEEEE
Q 036500 184 DGKEEHDIVIENSLFGPGDPEMWISIDGIWTIRI 217 (292)
Q Consensus 184 ~~g~eHeI~Iec~~~G~~dp~l~V~VDgk~v~qV 217 (292)
..|+.|.|.|+... -.+.+.|||+....+
T Consensus 60 ~dg~WH~v~i~~~~-----~~~~l~VD~~~~~~~ 88 (135)
T smart00282 60 NDGQWHRVAVERNG-----RRVTLSVDGENPVSG 88 (135)
T ss_pred CCCCEEEEEEEEeC-----CEEEEEECCCccccE
Confidence 45689999999873 269999999765544
No 8
>PRK00051 hisI phosphoribosyl-AMP cyclohydrolase; Reviewed
Probab=50.22 E-value=63 Score=27.98 Aligned_cols=32 Identities=19% Similarity=0.134 Sum_probs=26.1
Q ss_pred CCcEEEEEEC--CeEEEEecCcchhHhhhhcCCC
Q 036500 125 SDYYVAIVYE--DEIVLLLGDSLNDAYKRTKKRP 156 (292)
Q Consensus 125 sgfYVaVV~d--~EvvLlLGDl~~ea~~k~~~~~ 156 (292)
.|-.-|||-| ..-||+||=|.+||.++|-...
T Consensus 12 ~GLipaivqd~~tg~VLMlaymn~eAl~~Tl~tg 45 (125)
T PRK00051 12 DGLVPAIAQDAETGEVLMVAWMNEEALAKTLETG 45 (125)
T ss_pred CCcEEEEEEECCCCCEEEEEEcCHHHHHHHHhcC
Confidence 4778888887 5678999999999999986543
No 9
>PF06905 FAIM1: Fas apoptotic inhibitory molecule (FAIM1); InterPro: IPR010695 This family consists of several fas apoptotic inhibitory molecule (FAIM) proteins. FAIM expression is upregulated in B cells by anti-Ig treatment that induces Fas-resistance, and overexpression of FAIM diminishes sensitivity to Fas-mediated apoptosis of B and non-B cell lines. FAIM is highly evolutionarily conserved and is widely expressed in murine tissues, suggesting that FAIM plays an important role in cellular physiology [].; GO: 0043066 negative regulation of apoptosis; PDB: 3MX7_A 2KW1_A 2KD2_A.
Probab=48.60 E-value=87 Score=28.41 Aligned_cols=42 Identities=31% Similarity=0.583 Sum_probs=26.2
Q ss_pred CCeeEEEEEEecc-CCCCCCcEEEEEcCeEEEEEeeeccccc--cceEEEeC
Q 036500 185 GKEEHDIVIENSL-FGPGDPEMWISIDGIWTIRILNLNWRFR--GNETISMN 233 (292)
Q Consensus 185 ~g~eHeI~Iec~~-~G~~dp~l~V~VDgk~v~qVkrL~WkFR--GNetI~vd 233 (292)
+...|.|.+|=.+ .| ..-|+||||.+++ | .|.|+ |-++-.|+
T Consensus 14 ~d~~h~IefeHgtttG----krvI~VDGkei~r-~--~wmfklvg~e~F~ig 58 (177)
T PF06905_consen 14 SDGVHKIEFEHGTTTG----KRVIKVDGKEIVR-R--DWMFKLVGKETFTIG 58 (177)
T ss_dssp TTEEEEEEEEE-TTT------EEEEETTEEEEE-E-----S---EEEEEEET
T ss_pred CCCEEEEEEEeCCccC----eEEEEECCcEEEE-e--cceeeeCcccEEEEC
Confidence 4678999999763 34 7999999997776 3 57776 55555555
No 10
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function.; PDB: 3IMM_B 3NMB_A 3S5Q_A 3OSD_A 3HBK_A 3H3L_A 3U1X_A.
Probab=42.99 E-value=58 Score=27.30 Aligned_cols=36 Identities=8% Similarity=-0.048 Sum_probs=28.6
Q ss_pred cCCCeeEEEEEEeccCCCCCCcEEEEEcCeEEEEEeeeccc
Q 036500 183 GDGKEEHDIVIENSLFGPGDPEMWISIDGIWTIRILNLNWR 223 (292)
Q Consensus 183 ~~~g~eHeI~Iec~~~G~~dp~l~V~VDgk~v~qVkrL~Wk 223 (292)
...++.|.|.|+|.. ..+.|.|||+.|+......=.
T Consensus 124 ~~~~~W~~~~I~~~g-----~~i~v~vnG~~v~~~~d~~~~ 159 (185)
T PF06439_consen 124 IPPGEWNTVRIVVKG-----NRITVWVNGKPVADFTDPSFP 159 (185)
T ss_dssp --TTSEEEEEEEEET-----TEEEEEETTEEEEEEETTSHH
T ss_pred CCCCceEEEEEEEEC-----CEEEEEECCEEEEEEEcCCCC
Confidence 377899999999972 379999999999998876544
No 11
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=42.26 E-value=1.1e+02 Score=23.61 Aligned_cols=35 Identities=14% Similarity=0.360 Sum_probs=25.0
Q ss_pred EEEEeeeccccccceEEEeC-CcEEEEEEEe---ecccc
Q 036500 214 TIRILNLNWRFRGNETISMN-DTSIQIYWDV---HDWLF 248 (292)
Q Consensus 214 v~qVkrL~WkFRGNetI~vd-g~~V~V~WDV---HdWlF 248 (292)
.++|....=.-.+.+++.|. |..+++.|++ |+|+.
T Consensus 35 ~~~v~~~~y~~~~~~~~~v~ag~~~~~~w~l~~s~gwYD 73 (89)
T PF05506_consen 35 TFTVYDNAYGGGGPWTYTVAAGQTVSLTWPLAASGGWYD 73 (89)
T ss_pred EEEEEeCCcCCCCCEEEEECCCCEEEEEEeecCCCCcEE
Confidence 34444433333567888886 8999999999 88976
No 12
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=39.26 E-value=1e+02 Score=23.82 Aligned_cols=19 Identities=16% Similarity=0.503 Sum_probs=14.0
Q ss_pred cceeeEEE-CCeeEEEEecC
Q 036500 94 KGLKNFEI-DGKRAFVYWDF 112 (292)
Q Consensus 94 kGsK~f~~-~~~~V~v~WDL 112 (292)
.+..++.+ .|..+.+.|||
T Consensus 46 ~~~~~~~v~ag~~~~~~w~l 65 (89)
T PF05506_consen 46 GGPWTYTVAAGQTVSLTWPL 65 (89)
T ss_pred CCCEEEEECCCCEEEEEEee
Confidence 34455566 48899999999
No 13
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=33.30 E-value=38 Score=35.33 Aligned_cols=43 Identities=33% Similarity=0.535 Sum_probs=30.6
Q ss_pred CCcEEE-EEcCeEEE-------EEeeeccccccceEEEeCCcEEEEEEEee
Q 036500 202 DPEMWI-SIDGIWTI-------RILNLNWRFRGNETISMNDTSIQIYWDVH 244 (292)
Q Consensus 202 dp~l~V-~VDgk~v~-------qVkrL~WkFRGNetI~vdg~~V~V~WDVH 244 (292)
|.++.| ..||..+. =|-+|+||=+||..+--+-..+-|+||+|
T Consensus 256 ~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~ 306 (524)
T KOG0273|consen 256 DGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAH 306 (524)
T ss_pred CcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEecc
Confidence 444443 45665433 25689999999998887666788999996
No 14
>TIGR02148 Fibro_Slime fibro-slime domain. This model represents a conserved region of about 90 amino acids, shared in at least 4 distinct large putative proteins from the slime mold Dictyostelium discoideum and 10 proteins from the rumen bacterium Fibrobacter succinogenes, and in no other species so far. We propose here the name fibro-slime domain
Probab=31.67 E-value=43 Score=27.45 Aligned_cols=20 Identities=25% Similarity=0.574 Sum_probs=16.2
Q ss_pred CCCcEEEEEcCeEEEEEeee
Q 036500 201 GDPEMWISIDGIWTIRILNL 220 (292)
Q Consensus 201 ~dp~l~V~VDgk~v~qVkrL 220 (292)
+|..+||-||||.|+-+=-+
T Consensus 26 GDDDvWVFIn~kLv~DlGG~ 45 (90)
T TIGR02148 26 GDDDVWVFINNKLVVDIGGQ 45 (90)
T ss_pred cCCeEEEEECCEEEEEccCc
Confidence 47789999999999876533
No 15
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=28.92 E-value=6.1e+02 Score=27.03 Aligned_cols=59 Identities=14% Similarity=0.231 Sum_probs=41.6
Q ss_pred eeEEEEEEeccCCCCCCcEEEEEcCeEEEEEeeeccccccce-EEEeCCcEEEEEEEee-----ccccC
Q 036500 187 EEHDIVIENSLFGPGDPEMWISIDGIWTIRILNLNWRFRGNE-TISMNDTSIQIYWDVH-----DWLFN 249 (292)
Q Consensus 187 ~eHeI~Iec~~~G~~dp~l~V~VDgk~v~qVkrL~WkFRGNe-tI~vdg~~V~V~WDVH-----dWlF~ 249 (292)
...+|.||-..+..+...+.++|+|-+++--+- +|.|.| |++++..+ |.|=|.. |-+|+
T Consensus 365 ~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C---~~~g~QDTLy~~~~r-q~y~~c~I~GtvDFIFG 429 (587)
T PLN02313 365 LARDITFQNTAGPSKHQAVALRVGSDFSAFYQC---DMFAYQDTLYVHSNR-QFFVKCHITGTVDFIFG 429 (587)
T ss_pred EEEeeEEEeCCCCCCCceEEEEecCCcEEEEee---eEecccchhccCCCc-EEEEeeEEeeccceecc
Confidence 678899987744345678889999988764333 799999 88887653 4555543 66674
No 16
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=28.56 E-value=66 Score=25.49 Aligned_cols=19 Identities=21% Similarity=0.366 Sum_probs=13.7
Q ss_pred eEecCe-eeEEEEEeecccC
Q 036500 43 AKIADF-FRKITVTWSKNLV 61 (292)
Q Consensus 43 ~~L~~~-~~litvTWsk~l~ 61 (292)
+...|+ +..|+|+|-|+=.
T Consensus 23 C~a~gFyP~~i~vtW~k~g~ 42 (95)
T cd04985 23 CLATGFLPEPVTFTWNSGSN 42 (95)
T ss_pred EEEeeEECCCcEEEEeECCE
Confidence 455564 6789999988644
No 17
>KOG2463 consensus Predicted RNA-binding protein Nob1p involved in 26S proteasome assembly [Posttranslational modification, protein turnover, chaperones]
Probab=25.88 E-value=49 Score=33.21 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=19.5
Q ss_pred EEEEcCeEEEEEe-eeccccccceE
Q 036500 206 WISIDGIWTIRIL-NLNWRFRGNET 229 (292)
Q Consensus 206 ~V~VDgk~v~qVk-rL~WkFRGNet 229 (292)
.|.=||..-+|.| |.+||=||+|-
T Consensus 274 sv~~dG~~~~h~k~r~~~n~RG~~Y 298 (376)
T KOG2463|consen 274 SVDEDGNGQTHFKKRFQWNNRGLQY 298 (376)
T ss_pred EecCCCceeEEeecccccccCccee
Confidence 3444666889998 99999999995
No 18
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=23.20 E-value=94 Score=32.37 Aligned_cols=38 Identities=29% Similarity=0.556 Sum_probs=26.9
Q ss_pred EEecCCc----cccCCCCCCC-------CCcEEEEEECCeEEEEecCcch
Q 036500 108 VYWDFRQ----AKFSSNPAPS-------SDYYVAIVYEDEIVLLLGDSLN 146 (292)
Q Consensus 108 v~WDLs~----Akf~~~PEP~-------sgfYVaVV~d~EvvLlLGDl~~ 146 (292)
=+|||++ |||.+-.-|+ .|||+|+-+|.-- ..|=||+|
T Consensus 372 kiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~-V~lwDLRK 420 (506)
T KOG0289|consen 372 KIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGS-VKLWDLRK 420 (506)
T ss_pred EEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCe-EEEEEehh
Confidence 4699985 8897644443 6999999996552 33458865
No 19
>PF12101 DUF3577: Protein of unknown function (DUF3577); InterPro: IPR021960 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 143 to 307 amino acids in length.
Probab=23.05 E-value=1.9e+02 Score=25.43 Aligned_cols=13 Identities=31% Similarity=0.746 Sum_probs=9.4
Q ss_pred EEEEEcCeEEEEE
Q 036500 205 MWISIDGIWTIRI 217 (292)
Q Consensus 205 l~V~VDgk~v~qV 217 (292)
-||+|||+.|.+-
T Consensus 117 ~~iKVdge~Vy~~ 129 (137)
T PF12101_consen 117 KWIKVDGELVYKA 129 (137)
T ss_pred EEEEECCEEEecC
Confidence 4788888887653
No 20
>PRK02759 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein; Reviewed
Probab=21.42 E-value=2.8e+02 Score=25.78 Aligned_cols=57 Identities=23% Similarity=0.252 Sum_probs=37.6
Q ss_pred CcEEEEEEC--CeEEEEecCcchhHhhhhcCCCCCCceeeEEEEEEEeeeeEEEeeEEecCCC-------eeEEEEEEec
Q 036500 126 DYYVAIVYE--DEIVLLLGDSLNDAYKRTKKRPTFPEATLLCKKQNVYGKKLFCTRALLGDGK-------EEHDIVIENS 196 (292)
Q Consensus 126 gfYVaVV~d--~EvvLlLGDl~~ea~~k~~~~~~~~~a~LvsRrEhv~G~~~~~TkA~F~~~g-------~eHeI~Iec~ 196 (292)
|-.-|||-| .--||+||=|.+||+++|-... .+...||. |-+.--+| +-.+|.++|+
T Consensus 15 gLip~ivqd~~tg~vLml~ymn~eal~~Tl~tg---~~~~~SRS-----------r~~lW~KGetSG~~q~v~~i~~DCD 80 (203)
T PRK02759 15 GLIPAIVQDALTGEVLMLGYMNREALEKTLETG---EVTFFSRS-----------KQRLWTKGETSGNTQKVVSIRLDCD 80 (203)
T ss_pred CcEEEEEEECCCCCEEEEEecCHHHHHHHHhcC---cEEEEeCC-----------CCcccCCCCCCCCeEEEEEEEecCC
Confidence 677778876 4468999999999999986544 24444442 12233333 4567888887
No 21
>smart00210 TSPN Thrombospondin N-terminal -like domains. Heparin-binding and cell adhesion domain of thrombospondin
Probab=21.38 E-value=1.5e+02 Score=25.90 Aligned_cols=44 Identities=11% Similarity=-0.052 Sum_probs=29.8
Q ss_pred CCCeeEEEEEEeccCCCCCCcEEEEEcCeEEEEEeeeccccccceEEEeCCc
Q 036500 184 DGKEEHDIVIENSLFGPGDPEMWISIDGIWTIRILNLNWRFRGNETISMNDT 235 (292)
Q Consensus 184 ~~g~eHeI~Iec~~~G~~dp~l~V~VDgk~v~qVkrL~WkFRGNetI~vdg~ 235 (292)
..|++|-|.|..... .+.+.||++.+-.+. |...+. +.+..+|.
T Consensus 115 ~dg~WH~lal~V~~~-----~v~LyvDC~~~~~~~-l~~~~~--~~~~~~g~ 158 (184)
T smart00210 115 ADGQWHKLALSVSGS-----SATLYVDCNEIDSRP-LDRPGQ--PPIDTDGI 158 (184)
T ss_pred ccCCceEEEEEEeCC-----EEEEEECCcccccee-cCCccc--ccccccce
Confidence 566899999987632 588999999876554 766554 34444443
No 22
>PLN02346 histidine biosynthesis bifunctional protein hisIE
Probab=20.80 E-value=2.3e+02 Score=27.50 Aligned_cols=31 Identities=23% Similarity=0.190 Sum_probs=23.4
Q ss_pred CcEEEEEEC--CeEEEEecCcchhHhhhhcCCC
Q 036500 126 DYYVAIVYE--DEIVLLLGDSLNDAYKRTKKRP 156 (292)
Q Consensus 126 gfYVaVV~d--~EvvLlLGDl~~ea~~k~~~~~ 156 (292)
|---|||-| ..-||+||=|.+||+++|-...
T Consensus 53 gLipaivQd~~tg~VLml~ymn~eal~~Tl~tg 85 (271)
T PLN02346 53 GLAVAIAQNVDTGAILMQGFANREAISATISSR 85 (271)
T ss_pred CCEEEEEEECCCCCEEEEEecCHHHHHHHHhcC
Confidence 555556654 5678999999999999986543
No 23
>PF03628 PapG_C: PapG chaperone-binding domain ; InterPro: IPR005309 PapG, the adhesin of the P-pili, is situated at the tip and is only a minor component of the whole pilus structure. A two-domain structure has been postulated for PapG; a carbohydrate binding N terminus and chaperone binding C terminus (this domain). The chaperone-binding domain is highly conserved, and is essential for the correct assembly of the pili structure when aided by the chaperone molecule PapD [, ].; PDB: 2WMP_B 3ME0_B.
Probab=20.44 E-value=75 Score=26.96 Aligned_cols=28 Identities=32% Similarity=0.544 Sum_probs=23.5
Q ss_pred EEEEEcCeEEEEEeeeccccccceEEEeC
Q 036500 205 MWISIDGIWTIRILNLNWRFRGNETISMN 233 (292)
Q Consensus 205 l~V~VDgk~v~qVkrL~WkFRGNetI~vd 233 (292)
-.|+|||+...+-- |||.=-|+|||.|.
T Consensus 55 siisinG~~~~e~t-l~~~tagskti~ig 82 (108)
T PF03628_consen 55 SIISINGVKQSETT-LRWYTAGSKTITIG 82 (108)
T ss_dssp EEEEETTB-SSEEE-EEESSSEEEEEEEE
T ss_pred EEEEECCccccceE-EEEeecCCceEEee
Confidence 45899998887776 89999999999885
No 24
>PF00054 Laminin_G_1: Laminin G domain; InterPro: IPR012679 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, which includes a large number of extracellular proteins. The C terminus of laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions has been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each has five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012680 from INTERPRO).; PDB: 1OKQ_A 1DYK_A 2C5D_A 1H30_A 1LHW_A 1KDK_A 1LHU_A 1KDM_A 1LHO_A 1D2S_A ....
Probab=20.38 E-value=4.7e+02 Score=21.19 Aligned_cols=49 Identities=8% Similarity=0.004 Sum_probs=33.6
Q ss_pred cCCCeeEEEEEEeccCCCCCCcEEEEEcCeEEEEEeee-cc--ccccceEEEeCCcE
Q 036500 183 GDGKEEHDIVIENSLFGPGDPEMWISIDGIWTIRILNL-NW--RFRGNETISMNDTS 236 (292)
Q Consensus 183 ~~~g~eHeI~Iec~~~G~~dp~l~V~VDgk~v~qVkrL-~W--kFRGNetI~vdg~~ 236 (292)
-..|++|.|.++-.. -...++||+..++...-- .= ...-+..|+|.|+|
T Consensus 50 i~dg~wh~v~~~r~~-----~~~~L~Vd~~~~~~~~s~~~~~~~l~~~~~lyvGG~p 101 (131)
T PF00054_consen 50 INDGKWHTVSVSRNG-----RNGSLSVDGEEVVTGESPSGATQSLDVDGPLYVGGLP 101 (131)
T ss_dssp TTSSSEEEEEEEEET-----TEEEEEETTSEEEEEEECSSSSSSCEECSEEEESSSS
T ss_pred cCCCcceEEEEEEcC-----cEEEEEECCccceeeecCCccccccccccCEEEccCC
Confidence 578899999998762 279999999998444332 11 12333448888888
Done!