Query 036500
Match_columns 292
No_of_seqs 112 out of 139
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 03:43:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036500.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036500hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gne_A Val-1; alginate lyase, 81.7 1.2 4E-05 41.1 4.1 54 184-240 161-220 (252)
2 2zzj_A Glucuronan lyase A; bet 69.8 12 0.0004 34.1 7.2 46 175-221 139-184 (238)
3 1d2s_A SHBG, sex hormone-bindi 66.1 9.6 0.00033 31.3 5.5 79 124-236 51-129 (170)
4 1f5f_A SHBG, sex hormone-bindi 61.6 15 0.00051 30.9 6.0 82 124-237 63-148 (205)
5 1pz7_A Agrin; structural prote 61.5 62 0.0021 26.9 9.8 80 124-237 74-157 (204)
6 3bod_A Neurexin-1-alpha; neure 49.4 20 0.00067 29.5 4.6 49 184-237 89-140 (178)
7 3v64_A Low-density lipoprotein 48.7 1.1E+02 0.0039 25.1 9.6 49 183-236 93-143 (191)
8 2jd4_A Laminin subunit alpha-1 44.9 93 0.0032 28.1 8.8 59 125-217 69-129 (383)
9 3asi_A Neurexin-1-alpha; beta- 43.1 34 0.0012 31.5 5.7 49 184-236 85-133 (410)
10 2p24_A H-2 class II histocompa 42.3 24 0.0008 30.7 4.2 29 104-138 206-234 (236)
11 1h30_A GAS6, growth-arrest-spe 37.8 2.5E+02 0.0084 25.9 10.8 30 183-217 118-147 (422)
12 3sh4_A LG3 peptide; actin disa 37.2 1.7E+02 0.006 24.0 9.8 48 184-236 93-142 (195)
13 1p9k_A ORF, hypothetical prote 36.4 16 0.00056 26.6 1.9 30 207-239 48-77 (79)
14 3pve_A Agrin, AGRN protein; mR 36.0 45 0.0015 27.5 4.8 46 184-236 94-143 (189)
15 4b1m_A Levanase; hydrolase, CB 32.2 63 0.0022 26.9 5.1 31 184-219 129-159 (185)
16 1dyk_A Laminin alpha 2 chain; 32.0 61 0.0021 29.6 5.4 49 184-237 293-343 (394)
17 2h0b_A Neurexin-1-alpha; B-san 30.2 82 0.0028 25.5 5.4 48 184-236 87-136 (184)
18 2r1b_A Neurexin-1-beta, neurex 29.6 47 0.0016 28.4 4.0 29 183-216 94-122 (220)
19 2jd4_A Laminin subunit alpha-1 28.6 83 0.0028 28.4 5.6 48 184-236 281-330 (383)
20 2cua_A Protein (CUA); CUA cent 27.8 1.3E+02 0.0044 24.2 6.1 45 205-249 38-86 (135)
21 3asi_A Neurexin-1-alpha; beta- 26.8 62 0.0021 29.8 4.5 49 183-236 308-359 (410)
22 2k54_A Protein ATU0742; protei 26.3 1.7E+02 0.0059 21.4 6.3 16 233-248 103-120 (123)
23 1dyk_A Laminin alpha 2 chain; 25.4 1.1E+02 0.0037 28.0 5.9 60 124-217 82-143 (394)
24 3zr5_A Galactocerebrosidase; h 25.0 2.5E+02 0.0087 28.5 9.0 35 183-222 595-629 (656)
25 2r1d_A Neurexin-1-beta, neurex 24.1 81 0.0028 27.2 4.5 48 184-236 123-173 (226)
No 1
>3gne_A Val-1; alginate lyase, polysaccharide lyase family 14, chlorella VI lyase; HET: FLC; 1.20A {Chlorella virus} PDB: 3a0n_A* 3im0_A*
Probab=81.70 E-value=1.2 Score=41.06 Aligned_cols=54 Identities=15% Similarity=0.296 Sum_probs=42.6
Q ss_pred CCCeeEEEEEEecc--C----CCCCCcEEEEEcCeEEEEEeeeccccccceEEEeCCcEEEEE
Q 036500 184 DGKEEHDIVIENSL--F----GPGDPEMWISIDGIWTIRILNLNWRFRGNETISMNDTSIQIY 240 (292)
Q Consensus 184 ~~g~eHeI~Iec~~--~----G~~dp~l~V~VDgk~v~qVkrL~WkFRGNetI~vdg~~V~V~ 240 (292)
..|+.+.|.+.+.. . |..|.++.|.|||+.|+ ...|+|. .+..+.|+|+..+.|
T Consensus 161 ~~G~W~~V~q~VkLNT~~~G~g~aDG~v~v~VNG~~v~-~~~i~~r--~~~~~~I~gi~fsTF 220 (252)
T 3gne_A 161 KYDVWNRIEIGTKMNTFKNGIPQLDGESYVIVNGKKEV-LKRINWS--RSPDLLISRFDWNTF 220 (252)
T ss_dssp CBTSCEEEEEEEECCCEETTEECSCEEEEEEETTEEEE-EEEECCC--SSTTCCEEEEEEEEE
T ss_pred cCCceEEEEEEEEcCCCCCCCccCCceEEEEECCEEEE-ECCEEEE--ecCCccEeEEEEEEE
Confidence 57888888887763 3 46799999999999997 7888876 566677788877775
No 2
>2zzj_A Glucuronan lyase A; beta-jelly roll; HET: CIT; 1.80A {Trichoderma reesei}
Probab=69.83 E-value=12 Score=34.15 Aligned_cols=46 Identities=15% Similarity=0.029 Sum_probs=35.2
Q ss_pred EEEeeEEecCCCeeEEEEEEeccCCCCCCcEEEEEcCeEEEEEeeec
Q 036500 175 LFCTRALLGDGKEEHDIVIENSLFGPGDPEMWISIDGIWTIRILNLN 221 (292)
Q Consensus 175 ~~~TkA~F~~~g~eHeI~Iec~~~G~~dp~l~V~VDgk~v~qVkrL~ 221 (292)
.|...+.. ..|+.|+|+|...=+..++.-+.|-+||++|+.-+...
T Consensus 139 ~~~~l~~v-~~G~Wh~iVihvkWs~d~~Gf~~vW~dG~~v~~~~g~~ 184 (238)
T 2zzj_A 139 TRPNLATV-SAGAWHRVVLQIKWASDNTGYFKIWFDGAKVHEEYNVA 184 (238)
T ss_dssp EEEEEEEC-CTTSCEEEEEEEEECSSTTEEEEEEETTEEEEEEEEEC
T ss_pred eccccccc-cCCceEEEEEEEEEeCCCCcEEEEEECCEEEEeecCcc
Confidence 45445544 78999999999874444678999999999999876543
No 3
>1d2s_A SHBG, sex hormone-binding globulin; steroid transport, laminin G-like domain, jellyroll, androgen binding protein (ABP); HET: DHT; 1.55A {Homo sapiens} SCOP: b.29.1.4 PDB: 1kdk_A* 1kdm_A*
Probab=66.12 E-value=9.6 Score=31.34 Aligned_cols=79 Identities=10% Similarity=0.119 Sum_probs=50.2
Q ss_pred CCCcEEEEEECCeEEEEecCcchhHhhhhcCCCCCCceeeEEEEEEEeeeeEEEeeEEecCCCeeEEEEEEeccCCCCCC
Q 036500 124 SSDYYVAIVYEDEIVLLLGDSLNDAYKRTKKRPTFPEATLLCKKQNVYGKKLFCTRALLGDGKEEHDIVIENSLFGPGDP 203 (292)
Q Consensus 124 ~sgfYVaVV~d~EvvLlLGDl~~ea~~k~~~~~~~~~a~LvsRrEhv~G~~~~~TkA~F~~~g~eHeI~Iec~~~G~~dp 203 (292)
-.+|...-+.|+.+.+.+.-.. ..+.+ .+..+ -..|++|.|.|+-.. .
T Consensus 51 ~~df~~l~L~~G~l~~~~~~g~--------------~~~~~------------~s~~~-vnDG~WH~V~v~~~~-----~ 98 (170)
T 1d2s_A 51 KDDWFMLGLRDGRPEIQLHNHW--------------AQLTV------------GAGPR-LDDGRWHQVEVKMEG-----D 98 (170)
T ss_dssp TTEEEEEEEETTEEEEEEESSS--------------CEEEE------------ECSCC-CCSSSCEEEEEEEET-----T
T ss_pred CCCEEEEEEeCCEEEEEEECCC--------------ceEEE------------eCCCc-cCCCCCEEEEEEEeC-----C
Confidence 3577777788999988763210 01111 11122 356799999998762 3
Q ss_pred cEEEEEcCeEEEEEeeeccccccceEEEeCCcE
Q 036500 204 EMWISIDGIWTIRILNLNWRFRGNETISMNDTS 236 (292)
Q Consensus 204 ~l~V~VDgk~v~qVkrL~WkFRGNetI~vdg~~ 236 (292)
.+.+.|||..+..+..+.- .- ...++|.|.|
T Consensus 99 ~~~L~VD~~~~~~~~~~~~-l~-~~~lylGG~p 129 (170)
T 1d2s_A 99 SVLLEVDGEEVLRLRQVSG-HP-IMRIALGGLL 129 (170)
T ss_dssp EEEEEETTEEEEEETTCCC-CC-EEEEEESSCS
T ss_pred EEEEEECCeeeeeeccCCC-cc-cccEEEECcc
Confidence 6999999999887765432 10 2468888876
No 4
>1f5f_A SHBG, sex hormone-binding globulin; jellyroll, signaling protein; HET: DHT; 1.70A {Homo sapiens} SCOP: b.29.1.4 PDB: 1lhw_A* 1lho_A* 1lhn_A* 1lhv_A* 1lhu_A*
Probab=61.61 E-value=15 Score=30.89 Aligned_cols=82 Identities=11% Similarity=0.117 Sum_probs=50.8
Q ss_pred CCCcEEEEEECCeEEEEecCcchhHhhhhcCCCCCCceeeEEEEEEEeeeeEEEeeEEecCCCeeEEEEEEeccCCCCCC
Q 036500 124 SSDYYVAIVYEDEIVLLLGDSLNDAYKRTKKRPTFPEATLLCKKQNVYGKKLFCTRALLGDGKEEHDIVIENSLFGPGDP 203 (292)
Q Consensus 124 ~sgfYVaVV~d~EvvLlLGDl~~ea~~k~~~~~~~~~a~LvsRrEhv~G~~~~~TkA~F~~~g~eHeI~Iec~~~G~~dp 203 (292)
-.+|...-+.|+.+.+.+--... .+.+ .+.. --..|++|.|.|+-.. .
T Consensus 63 ~~d~~~l~L~~G~l~~~~~~g~~--------------~~~~------------~s~~-~vnDG~WH~V~v~r~~-----~ 110 (205)
T 1f5f_A 63 KDDWFMLGLRDGRPEIQLHNHWA--------------QLTV------------GAGP-RLDDGRWHQVEVKMEG-----D 110 (205)
T ss_dssp TTEEEEEEEETTEEEEEEESSSC--------------EEEE------------ECSC-CCCSSSCEEEEEEEET-----T
T ss_pred CCCEEEEEEECCEEEEEEECCCc--------------eEEE------------ecCC-ccCCCCCEEEEEEEeC-----C
Confidence 35777777789988876542110 1111 1112 2366799999998762 3
Q ss_pred cEEEEEcCeEEEEEeeec-c--cccc-ceEEEeCCcEE
Q 036500 204 EMWISIDGIWTIRILNLN-W--RFRG-NETISMNDTSI 237 (292)
Q Consensus 204 ~l~V~VDgk~v~qVkrL~-W--kFRG-NetI~vdg~~V 237 (292)
.+.+.|||..+..+.++. - +.-. +..|+|.|+|.
T Consensus 111 ~~~L~VD~~~~~~~~~~~~~~~~~~~~~~~lyiGG~p~ 148 (205)
T 1f5f_A 111 SVLLEVDGEEVLRLRQVSGPLTSKRHPIMRIALGGLLF 148 (205)
T ss_dssp EEEEEETTEEEEEECSCCCCC----CCEEEEEESSCSS
T ss_pred EEEEEECCeeeeeeeccCCCcccccCCCceEEEeCccC
Confidence 699999999988775432 1 1222 24689999873
No 5
>1pz7_A Agrin; structural protein; 1.42A {Gallus gallus} SCOP: b.29.1.4 PDB: 1pz8_A 1pz9_A 1q56_A
Probab=61.52 E-value=62 Score=26.90 Aligned_cols=80 Identities=10% Similarity=0.068 Sum_probs=47.3
Q ss_pred CCCcEEEEEECCeEEEEe--cCcchhHhhhhcCCCCCCceeeEEEEEEEeeeeEEEeeEEecCCCeeEEEEEEeccCCCC
Q 036500 124 SSDYYVAIVYEDEIVLLL--GDSLNDAYKRTKKRPTFPEATLLCKKQNVYGKKLFCTRALLGDGKEEHDIVIENSLFGPG 201 (292)
Q Consensus 124 ~sgfYVaVV~d~EvvLlL--GDl~~ea~~k~~~~~~~~~a~LvsRrEhv~G~~~~~TkA~F~~~g~eHeI~Iec~~~G~~ 201 (292)
..+|...-+.|+.+.|.+ |+.. .. + .+..++ ..|++|.|.|+-..
T Consensus 74 ~~dfl~l~L~~G~l~~~~~~G~g~---------------~~------------v-~s~~~l-nDg~WH~V~v~r~~---- 120 (204)
T 1pz7_A 74 RSDYIALAIVDGFVQMMYDLGSKP---------------VV------------L-RSTVPI-NTNHWTHIKAYRVQ---- 120 (204)
T ss_dssp TCCEEEEEEETTEEEEEEESSSCC---------------EE------------E-EEEEEC-CSSSCEEEEEEEET----
T ss_pred CCCeEEEEEECCEEEEEEECCCCe---------------EE------------E-ECCccc-CCCCeEEEEEEEeC----
Confidence 457776667799988865 4420 11 1 122233 56789999998763
Q ss_pred CCcEEEEEcCeEEEEEeee--ccccccceEEEeCCcEE
Q 036500 202 DPEMWISIDGIWTIRILNL--NWRFRGNETISMNDTSI 237 (292)
Q Consensus 202 dp~l~V~VDgk~v~qVkrL--~WkFRGNetI~vdg~~V 237 (292)
..+.+.||+.......-. .-.+--+..++|.|+|.
T Consensus 121 -~~~~L~VD~~~~~~~~~~~~~~~l~~~~~lylGG~p~ 157 (204)
T 1pz7_A 121 -REGSLQVGNEAPITGSSPLGATQLDTDGALWLGGMER 157 (204)
T ss_dssp -TEEEEEETTSCCEEEECCSSCCCEEECCEEEESSCSC
T ss_pred -CEEEEEECCcceEEEECCCCCceEcCCCCEEEecCCC
Confidence 268999999876543311 01111244677777753
No 6
>3bod_A Neurexin-1-alpha; neurexin1D, LNS6, alternative splicing, calcium, cell adhesion, EGF-like domain, glycoprotein, membrane, metal- binding; 1.70A {Mus musculus} PDB: 2vh8_C 2xb6_C* 2wqz_C* 1c4r_A 3bop_A 3mw4_A*
Probab=49.40 E-value=20 Score=29.52 Aligned_cols=49 Identities=14% Similarity=0.119 Sum_probs=33.4
Q ss_pred CCCeeEEEEEEeccCCCCCCcEEEEEcCeEEEEEeeeccc---cccceEEEeCCcEE
Q 036500 184 DGKEEHDIVIENSLFGPGDPEMWISIDGIWTIRILNLNWR---FRGNETISMNDTSI 237 (292)
Q Consensus 184 ~~g~eHeI~Iec~~~G~~dp~l~V~VDgk~v~qVkrL~Wk---FRGNetI~vdg~~V 237 (292)
..|++|.|.|+-.. ..+.+.||+..........=. +--+..|+|.|.|.
T Consensus 89 nDg~WH~V~v~r~~-----~~~~L~VD~~~~~~~~~~~~~~~~l~~~~~lylGG~p~ 140 (178)
T 3bod_A 89 NDGKYHVVRFTRSG-----GNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGGKEQ 140 (178)
T ss_dssp CSSSCEEEEEEEET-----TEEEEEETTSCCEEECCCSCCCCCBCCEEEEEESCCTT
T ss_pred cCCCeEEEEEEEeC-----CEEEEEEeCCceeeeecCCCcceEEeCCCcEEEecccC
Confidence 56799999998762 378999999876654322111 23344688999874
No 7
>3v64_A Low-density lipoprotein receptor-related protein; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} PDB: 3v65_A
Probab=48.68 E-value=1.1e+02 Score=25.13 Aligned_cols=49 Identities=4% Similarity=-0.093 Sum_probs=30.8
Q ss_pred cCCCeeEEEEEEeccCCCCCCcEEEEEcCeEEEEEeee--ccccccceEEEeCCcE
Q 036500 183 GDGKEEHDIVIENSLFGPGDPEMWISIDGIWTIRILNL--NWRFRGNETISMNDTS 236 (292)
Q Consensus 183 ~~~g~eHeI~Iec~~~G~~dp~l~V~VDgk~v~qVkrL--~WkFRGNetI~vdg~~ 236 (292)
-..|+.|.|.|+-.. ..+.+.|||.......-- .-.+.-+..|+|.|.|
T Consensus 93 v~Dg~WH~V~v~r~~-----~~~~L~VD~~~~~~~~~~~~~~~l~~~~~lylGG~p 143 (191)
T 3v64_A 93 VNTNRWLRIRAHREH-----REGSLQVGNEAPVTGSSPLGATQLDTDGALWLGGLQ 143 (191)
T ss_dssp CTTSSCEEEEEEEET-----TEEEEEETTSCCEEEECCTTCCCEEECSEEEESCCS
T ss_pred ccCCCCEEEEEEEeC-----CEEEEEECCeeeEeEECCCCcceeccCCceEEcccC
Confidence 466899999998762 369999999865443210 1111223457777765
No 8
>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding protein; 1.9A {Mus musculus}
Probab=44.90 E-value=93 Score=28.10 Aligned_cols=59 Identities=15% Similarity=0.223 Sum_probs=37.8
Q ss_pred CCcEEEEEECCeEEEEe--cCcchhHhhhhcCCCCCCceeeEEEEEEEeeeeEEEeeEEecCCCeeEEEEEEeccCCCCC
Q 036500 125 SDYYVAIVYEDEIVLLL--GDSLNDAYKRTKKRPTFPEATLLCKKQNVYGKKLFCTRALLGDGKEEHDIVIENSLFGPGD 202 (292)
Q Consensus 125 sgfYVaVV~d~EvvLlL--GDl~~ea~~k~~~~~~~~~a~LvsRrEhv~G~~~~~TkA~F~~~g~eHeI~Iec~~~G~~d 202 (292)
.+|...-+.|+.+.|.+ |+.. ..+. +. .--..|+.|.|.|+-..
T Consensus 69 ~d~~~l~L~~G~l~~~~~~g~~~---------------~~~~-------------~~-~~~~Dg~WH~V~v~r~~----- 114 (383)
T 2jd4_A 69 MDYATLQLQEGRLHFMFDLGKGR---------------TKVS-------------HP-ALLSDGKWHTVKTEYIK----- 114 (383)
T ss_dssp SSEEEEEEETTEEEEEEECSSCE---------------EEEE-------------CC-CCCTTSSCEEEEEEEET-----
T ss_pred CcEEEEEEECCEEEEEEECCCCe---------------EEEe-------------Cc-ceecCCCcEEEEEEEeC-----
Confidence 57777777899998875 5521 1111 11 12367889999998763
Q ss_pred CcEEEEEcCeEEEEE
Q 036500 203 PEMWISIDGIWTIRI 217 (292)
Q Consensus 203 p~l~V~VDgk~v~qV 217 (292)
-.+.+.|||......
T Consensus 115 ~~~~L~VD~~~~~~~ 129 (383)
T 2jd4_A 115 RKAFMTVDGQESPSV 129 (383)
T ss_dssp TEEEEEETTEECCCE
T ss_pred CEEEEEEcCccccce
Confidence 258888888765543
No 9
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus}
Probab=43.11 E-value=34 Score=31.51 Aligned_cols=49 Identities=12% Similarity=0.110 Sum_probs=29.4
Q ss_pred CCCeeEEEEEEeccCCCCCCcEEEEEcCeEEEEEeeeccccccceEEEeCCcE
Q 036500 184 DGKEEHDIVIENSLFGPGDPEMWISIDGIWTIRILNLNWRFRGNETISMNDTS 236 (292)
Q Consensus 184 ~~g~eHeI~Iec~~~G~~dp~l~V~VDgk~v~qVkrL~WkFRGNetI~vdg~~ 236 (292)
..|++|.|.|+-... -.+.+.||++.+.++..-.-.+.-+..++|.|.|
T Consensus 85 nDg~WH~V~v~r~~~----~~~~l~VD~~~~~~~~~~~~~l~~~~~lyvGG~p 133 (410)
T 3asi_A 85 NDNQWHNVMISRDTS----NLHTVKIDTKITTQITAGARNLDLKSDLYIGGVA 133 (410)
T ss_dssp CSSSCEEEEEEECTT----CEEEEEETTEEEEEECTTCCCCCBCSCEEESCCC
T ss_pred CCCCeEEEEEEEcCC----ceEEEEECCEeceeccCCccceecCCceEECccc
Confidence 568899999987631 1378899999877652111111122345555554
No 10
>2p24_A H-2 class II histocompatibility antigen, A-U ALPH; MHC, I-AU, immunoglobulin fold, MBP, immune system; 2.15A {Mus musculus} SCOP: b.1.1.2 d.19.1.1
Probab=42.27 E-value=24 Score=30.71 Aligned_cols=29 Identities=21% Similarity=0.287 Sum_probs=7.2
Q ss_pred eeEEEEecCCccccCCCCCCCCCcEEEEEECCeEE
Q 036500 104 KRAFVYWDFRQAKFSSNPAPSSDYYVAIVYEDEIV 138 (292)
Q Consensus 104 ~~V~v~WDLs~Akf~~~PEP~sgfYVaVV~d~Evv 138 (292)
..+.+.||. ..|+|.++=..+|+|.-+|.
T Consensus 206 ~p~~~~w~~------~~~~~~~~~~~~~~c~~~~~ 234 (236)
T 2p24_A 206 EPVLKHWEP------EIPAPMSELTETSGSRLEVL 234 (236)
T ss_dssp SCEEEEECC------C-------------------
T ss_pred CcEEEEecC------CCCCCCCCccceEEEEEEeE
Confidence 567889974 35888888899999987764
No 11
>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein, vitamin K-dependent protein, AXL/SKY/MER ligand, laminin G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4 b.29.1.4 PDB: 2c5d_A*
Probab=37.75 E-value=2.5e+02 Score=25.92 Aligned_cols=30 Identities=13% Similarity=0.089 Sum_probs=23.7
Q ss_pred cCCCeeEEEEEEeccCCCCCCcEEEEEcCeEEEEE
Q 036500 183 GDGKEEHDIVIENSLFGPGDPEMWISIDGIWTIRI 217 (292)
Q Consensus 183 ~~~g~eHeI~Iec~~~G~~dp~l~V~VDgk~v~qV 217 (292)
-..|++|.|.|+-.. -.+.++||+..+...
T Consensus 118 ~nDg~WH~V~v~r~~-----~~~~L~VD~~~~~~~ 147 (422)
T 1h30_A 118 INHGMWQTISVEELA-----RNLVIKVNRDAVMKI 147 (422)
T ss_dssp CCSSCCEEEEEEECS-----SEEEEEETTEEEEEE
T ss_pred ecCCCCEEEEEEEcC-----CEEEEEECCeeeEEe
Confidence 356799999998762 369999999987665
No 12
>3sh4_A LG3 peptide; actin disassambly, integrin alpha12 BETA1, metal binding Pro; 1.50A {Homo sapiens} PDB: 3sh5_A
Probab=37.18 E-value=1.7e+02 Score=24.02 Aligned_cols=48 Identities=10% Similarity=0.033 Sum_probs=31.9
Q ss_pred CCCeeEEEEEEeccCCCCCCcEEEEEcCeEEEEEeeec--cccccceEEEeCCcE
Q 036500 184 DGKEEHDIVIENSLFGPGDPEMWISIDGIWTIRILNLN--WRFRGNETISMNDTS 236 (292)
Q Consensus 184 ~~g~eHeI~Iec~~~G~~dp~l~V~VDgk~v~qVkrL~--WkFRGNetI~vdg~~ 236 (292)
..|+.|.|.|+-.. -.+.+.|||..+....--. -.+.=+..|+|.|+|
T Consensus 93 ~Dg~WH~V~v~r~~-----~~~~L~VD~~~~~~~~~~~~~~~l~~~~~lyvGG~p 142 (195)
T 3sh4_A 93 NDGEWHRVTALREG-----RRGSIQVDGEELVSGRSPGPNVAVNAKGSVYIGGAP 142 (195)
T ss_dssp CSSSCEEEEEEEET-----TEEEEEETTCCCEEEECCSSCCCCCCCSCEEESCCT
T ss_pred CCCCeEEEEEEEeC-----CEEEEEECCeeeeeeeCCCCcccccCCCCEEECCCC
Confidence 55799999998763 3789999998765443110 111223469999986
No 13
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: d.66.1.6
Probab=36.41 E-value=16 Score=26.59 Aligned_cols=30 Identities=20% Similarity=0.386 Sum_probs=19.4
Q ss_pred EEEcCeEEEEEeeeccccccceEEEeCCcEEEE
Q 036500 207 ISIDGIWTIRILNLNWRFRGNETISMNDTSIQI 239 (292)
Q Consensus 207 V~VDgk~v~qVkrL~WkFRGNetI~vdg~~V~V 239 (292)
|+|||+.+ ++..-+...++.|.|+|.++++
T Consensus 48 V~VNG~~v---~~~~~~v~~gd~I~v~~~~~~~ 77 (79)
T 1p9k_A 48 VKVDGAVE---TRKRCKIVAGQTVSFAGHSVQV 77 (79)
T ss_dssp HEETTBCC---CCSSCCCCSSEEEEETTEEEEE
T ss_pred EEECCEEe---cCCCCCCCCCCEEEECCEEEEE
Confidence 66777763 3444455666777788777765
No 14
>3pve_A Agrin, AGRN protein; mRNA splicing, structural genomics, PSI-2, protein structure initiative; 1.40A {Mus musculus}
Probab=36.05 E-value=45 Score=27.50 Aligned_cols=46 Identities=4% Similarity=-0.107 Sum_probs=30.8
Q ss_pred CCCeeEEEEEEeccCCCCCCcEEEEEcCeEEEEEee----eccccccceEEEeCCcE
Q 036500 184 DGKEEHDIVIENSLFGPGDPEMWISIDGIWTIRILN----LNWRFRGNETISMNDTS 236 (292)
Q Consensus 184 ~~g~eHeI~Iec~~~G~~dp~l~V~VDgk~v~qVkr----L~WkFRGNetI~vdg~~ 236 (292)
..|++|.|.|+-.. ..+.+.|||.......- -..+. +..++|.|.|
T Consensus 94 ~Dg~WH~V~v~r~~-----~~~~L~VD~~~~~~~~~~~~~~~l~~--~~~lyvGG~p 143 (189)
T 3pve_A 94 ALGTWVRVFLERNG-----RKGALQVGDGPRVLGESPVPHTMLNL--KEPLYVGGAP 143 (189)
T ss_dssp CTTSEEEEEEEEET-----TEEEEEETTSCCEEEECCSSCCCCCC--CSCEEESCCS
T ss_pred CCCCEEEEEEEEeC-----CEEEEEECCceeEeEEcCCCcceecC--CCCEEECCcC
Confidence 45799999998762 36899999986544321 11222 3458888876
No 15
>4b1m_A Levanase; hydrolase, CBM66; HET: FRU; 1.10A {Bacillus subtilis} PDB: 4b1l_A* 4azz_A
Probab=32.20 E-value=63 Score=26.93 Aligned_cols=31 Identities=16% Similarity=0.110 Sum_probs=26.2
Q ss_pred CCCeeEEEEEEeccCCCCCCcEEEEEcCeEEEEEee
Q 036500 184 DGKEEHDIVIENSLFGPGDPEMWISIDGIWTIRILN 219 (292)
Q Consensus 184 ~~g~eHeI~Iec~~~G~~dp~l~V~VDgk~v~qVkr 219 (292)
..++.|.|.|++.+ ..+.+.|||+.++.+.-
T Consensus 129 ~~g~w~~l~I~~~G-----~~i~~~vnG~~v~~~~D 159 (185)
T 4b1m_A 129 DVNKKYHLKTEAEG-----DRFKIYLDDRLVIDAHD 159 (185)
T ss_dssp CSSCCEEEEEEEET-----TEEEEEETTEEEEEEEC
T ss_pred CCCCeEEEEEEEEC-----CEEEEEECCEEEEEEEC
Confidence 55889999999982 38999999999998864
No 16
>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus} SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A
Probab=31.98 E-value=61 Score=29.65 Aligned_cols=49 Identities=8% Similarity=-0.045 Sum_probs=30.0
Q ss_pred CCCeeEEEEEEeccCCCCCCcEEEEEcCeEEEEEeee--ccccccceEEEeCCcEE
Q 036500 184 DGKEEHDIVIENSLFGPGDPEMWISIDGIWTIRILNL--NWRFRGNETISMNDTSI 237 (292)
Q Consensus 184 ~~g~eHeI~Iec~~~G~~dp~l~V~VDgk~v~qVkrL--~WkFRGNetI~vdg~~V 237 (292)
..|++|.|.|.-.. -.+.+.|||..+...... ...+.-+..++|.|.|-
T Consensus 293 ~DG~WH~V~v~~~~-----~~~~L~VD~~~~~~~~~~~~~~~l~~~~~lylGG~p~ 343 (394)
T 1dyk_A 293 CNGQWHKVTAKKIK-----NRLELVVDGNQVDAQSPNSASTSADTNDPVFVGGFPG 343 (394)
T ss_dssp TSSSCEEEEEEEET-----TEEEEEETTEEEEEECCCTTCCCBCCCBCCEESCCCT
T ss_pred cCCceEEEEEEEeC-----CEEEEEECCcccccccCCCcceecccCCCEEEcCCCc
Confidence 45788888887652 258888888876543221 12333445677877753
No 17
>2h0b_A Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A {Bos taurus}
Probab=30.24 E-value=82 Score=25.51 Aligned_cols=48 Identities=19% Similarity=0.355 Sum_probs=29.8
Q ss_pred CCCeeEEEEEEeccCCCCCCcEEEEEcCeEEEEEeee-cccc-ccceEEEeCCcE
Q 036500 184 DGKEEHDIVIENSLFGPGDPEMWISIDGIWTIRILNL-NWRF-RGNETISMNDTS 236 (292)
Q Consensus 184 ~~g~eHeI~Iec~~~G~~dp~l~V~VDgk~v~qVkrL-~WkF-RGNetI~vdg~~ 236 (292)
..|++|.|.|+-.. -.+.+.|||.......-- .... --+..++|.|.|
T Consensus 87 ~Dg~WH~V~v~r~~-----~~~~L~VD~~~~~~~~~~~~~~~l~~~~~l~lGG~p 136 (184)
T 2h0b_A 87 NDNAWHDVKVTRNL-----RQVTISVDGILTTTGYTQEDYTMLGSDDFFYVGGSP 136 (184)
T ss_dssp SSSSCEEEEEEEET-----TEEEEEETTTEEEEEECSTTCCCEEECSEEEESCCT
T ss_pred CCCCeEEEEEEEeC-----CEEEEEEcCceeeeeECCCCceeccCCCCEEECCCC
Confidence 56799999998652 268999999876643210 0110 112357777765
No 18
>2r1b_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 1.72A {Rattus norvegicus} PDB: 3mw2_A* 3b3q_E* 3mw3_A*
Probab=29.57 E-value=47 Score=28.43 Aligned_cols=29 Identities=14% Similarity=0.029 Sum_probs=23.0
Q ss_pred cCCCeeEEEEEEeccCCCCCCcEEEEEcCeEEEE
Q 036500 183 GDGKEEHDIVIENSLFGPGDPEMWISIDGIWTIR 216 (292)
Q Consensus 183 ~~~g~eHeI~Iec~~~G~~dp~l~V~VDgk~v~q 216 (292)
-..|++|.|.|+-.. ..+.+.||+..+.+
T Consensus 94 vnDG~WH~V~v~r~~-----~~~~L~VD~~~~~~ 122 (220)
T 2r1b_A 94 INDGKYHVVRFTRSG-----GNATLQVDSWPVIE 122 (220)
T ss_dssp CCSSSCEEEEEEEET-----TEEEEEETTSCCEE
T ss_pred ecCCceEEEEEEEeC-----CEEEEEECCcceee
Confidence 367899999998763 36899999997654
No 19
>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding protein; 1.9A {Mus musculus}
Probab=28.60 E-value=83 Score=28.43 Aligned_cols=48 Identities=13% Similarity=0.041 Sum_probs=28.6
Q ss_pred CCCeeEEEEEEeccCCCCCCcEEEEEcCeEEEEEee-ecc-ccccceEEEeCCcE
Q 036500 184 DGKEEHDIVIENSLFGPGDPEMWISIDGIWTIRILN-LNW-RFRGNETISMNDTS 236 (292)
Q Consensus 184 ~~g~eHeI~Iec~~~G~~dp~l~V~VDgk~v~qVkr-L~W-kFRGNetI~vdg~~ 236 (292)
..|++|.|.|+-.. -.+.+.|||..+..... ... .+.-+..++|.|.|
T Consensus 281 ~DG~WH~V~l~~~~-----~~~~L~VD~~~~~~~~~~~~~~~l~~~~~lylGG~p 330 (383)
T 2jd4_A 281 CDGKWHTLQAHKSK-----HRIVLTVDGNSVRAESPHTHSTSADTNDPIYVGGYP 330 (383)
T ss_dssp GSSSCEEEEEEEET-----TEEEEEETTEEEEEC----CCCCBCCCEEEEESCCC
T ss_pred cCCCcEEEEEEEcC-----CEEEEEECCeecccccCCCCcccccCCCCEEEeccc
Confidence 45788888887652 26888889887543221 111 23334467787765
No 20
>2cua_A Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus} SCOP: b.6.1.2 PDB: 2fwl_B*
Probab=27.84 E-value=1.3e+02 Score=24.23 Aligned_cols=45 Identities=16% Similarity=0.228 Sum_probs=34.2
Q ss_pred EEEEEcCeEEEEEeeeccccccceEEEeCCcEEEEEE---Ee-eccccC
Q 036500 205 MWISIDGIWTIRILNLNWRFRGNETISMNDTSIQIYW---DV-HDWLFN 249 (292)
Q Consensus 205 l~V~VDgk~v~qVkrL~WkFRGNetI~vdg~~V~V~W---DV-HdWlF~ 249 (292)
+.-..++...++|.--+|+|.=|+.+.=-|.+|.+.. || |+|...
T Consensus 38 ~~~~~~~~~~V~v~~~~~~f~P~~l~Vp~G~~V~~~vts~DV~Hsf~ip 86 (135)
T 2cua_A 38 VVQTGPNQYTVYVLAFAFGYQPNPIEVPQGAEIVFKITSPDVIHGFHVE 86 (135)
T ss_dssp EEEEETTEEEEEEEEETTEEESSSEEEETTSEEEEEEEBSSSCEEEEET
T ss_pred cccCCCCCEEEEEEEEeCEEECCEEEEcCCCEEEEEEEeCCccceEEec
Confidence 5555666777777777999998876666699999988 54 998875
No 21
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus}
Probab=26.77 E-value=62 Score=29.76 Aligned_cols=49 Identities=14% Similarity=0.098 Sum_probs=32.2
Q ss_pred cCCCeeEEEEEEeccCCCCCCcEEEEEcCeEEEEEeee--ccc-cccceEEEeCCcE
Q 036500 183 GDGKEEHDIVIENSLFGPGDPEMWISIDGIWTIRILNL--NWR-FRGNETISMNDTS 236 (292)
Q Consensus 183 ~~~g~eHeI~Iec~~~G~~dp~l~V~VDgk~v~qVkrL--~Wk-FRGNetI~vdg~~ 236 (292)
-..|++|.|.|+-.. ..+.+.||+..+.....- +++ |..+..|+|.|.|
T Consensus 308 l~DG~wH~V~v~r~~-----~~~~L~VD~~~~~~~~~~g~~~~~~~~~~~lylGG~p 359 (410)
T 3asi_A 308 INDGKYHVVRFTRSG-----GNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGGKE 359 (410)
T ss_dssp CCSSSCEEEEEEEET-----TEEEEEETTSCCEEECCSSCCCCCBCCEEEEEESSTT
T ss_pred cCCCCeEEEEEEEEC-----CEEEEEECCcceecccCCCccceeeeccceEEECCcc
Confidence 345788999887662 268899999876554211 122 4456678888875
No 22
>2k54_A Protein ATU0742; protein of unknown function, structural genomics, PSI-2, Pro structure initiative; NMR {Agrobacterium tumefaciens str} SCOP: d.17.4.29
Probab=26.33 E-value=1.7e+02 Score=21.37 Aligned_cols=16 Identities=6% Similarity=-0.176 Sum_probs=11.0
Q ss_pred CCc--EEEEEEEeecccc
Q 036500 233 NDT--SIQIYWDVHDWLF 248 (292)
Q Consensus 233 dg~--~V~V~WDVHdWlF 248 (292)
||. .+..+||.-+|+-
T Consensus 103 dGkI~~~~~~~d~~~~~~ 120 (123)
T 2k54_A 103 NGRIAKAWFKIGEPRIVS 120 (123)
T ss_dssp TTEEEEEEEEEEEEECGG
T ss_pred CCEEEEEEEEcCChhhhh
Confidence 553 4677888888874
No 23
>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus} SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A
Probab=25.41 E-value=1.1e+02 Score=27.96 Aligned_cols=60 Identities=13% Similarity=0.061 Sum_probs=39.0
Q ss_pred CCCcEEEEEECCeEEEEe--cCcchhHhhhhcCCCCCCceeeEEEEEEEeeeeEEEeeEEecCCCeeEEEEEEeccCCCC
Q 036500 124 SSDYYVAIVYEDEIVLLL--GDSLNDAYKRTKKRPTFPEATLLCKKQNVYGKKLFCTRALLGDGKEEHDIVIENSLFGPG 201 (292)
Q Consensus 124 ~sgfYVaVV~d~EvvLlL--GDl~~ea~~k~~~~~~~~~a~LvsRrEhv~G~~~~~TkA~F~~~g~eHeI~Iec~~~G~~ 201 (292)
..+|...-+.|+.+.|.+ |+.. ..+. +. .--..|++|.|.|+-..
T Consensus 82 ~~dfi~l~L~~G~l~~~~~~g~g~---------------~~~~-------------~~-~~~~Dg~WH~V~v~r~~---- 128 (394)
T 1dyk_A 82 HADFATVQLRNGFPYFSYDLGSGD---------------TSTM-------------IP-TKINDGQWHKIKIVRVK---- 128 (394)
T ss_dssp SSSEEEEEEETTEEEEEEESSSCE---------------EEEE-------------CC-SCCCSSSCEEEEEEEET----
T ss_pred CCceEEEEEECCEEEEEEECCCCc---------------eEEE-------------cc-cccCCCCEEEEEEEEeC----
Confidence 357777777899988865 5421 1111 11 12367889999998763
Q ss_pred CCcEEEEEcCeEEEEE
Q 036500 202 DPEMWISIDGIWTIRI 217 (292)
Q Consensus 202 dp~l~V~VDgk~v~qV 217 (292)
-.+.+.|||..+...
T Consensus 129 -~~~~L~VD~~~~~~~ 143 (394)
T 1dyk_A 129 -QEGILYVDDASSQTI 143 (394)
T ss_dssp -TEEEEEETTEEEEEE
T ss_pred -CEEEEEEcCccccee
Confidence 268889999887654
No 24
>3zr5_A Galactocerebrosidase; hydrolase, GALC, glycosyl hydrolase, krabbe disease, TIM BAR lectin domain; HET: NAG; 2.10A {Mus musculus} PDB: 3zr6_A*
Probab=25.05 E-value=2.5e+02 Score=28.55 Aligned_cols=35 Identities=6% Similarity=-0.028 Sum_probs=28.8
Q ss_pred cCCCeeEEEEEEeccCCCCCCcEEEEEcCeEEEEEeeecc
Q 036500 183 GDGKEEHDIVIENSLFGPGDPEMWISIDGIWTIRILNLNW 222 (292)
Q Consensus 183 ~~~g~eHeI~Iec~~~G~~dp~l~V~VDgk~v~qVkrL~W 222 (292)
.+.++.|.+.|++.+ ..+.+.+||+.++.+.--..
T Consensus 595 ~~~~~w~~L~l~~~G-----~~i~~~ldG~~v~~~~D~~~ 629 (656)
T 3zr5_A 595 VTAKRWYTLTLGIKG-----YFAFGMLNGTILWKNVRVKY 629 (656)
T ss_dssp CCTTCEEEEEEEEET-----TEEEEEETTEEEEEEEECCS
T ss_pred CCCCceEEEEEEEEC-----CEEEEEECCEEEEEEecCCC
Confidence 367889999999983 37999999999988876655
No 25
>2r1d_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 2.60A {Rattus norvegicus} SCOP: b.29.1.4 PDB: 3biw_E*
Probab=24.08 E-value=81 Score=27.21 Aligned_cols=48 Identities=15% Similarity=0.094 Sum_probs=31.8
Q ss_pred CCCeeEEEEEEeccCCCCCCcEEEEEcCeEEEEEeeec---cccccceEEEeCCcE
Q 036500 184 DGKEEHDIVIENSLFGPGDPEMWISIDGIWTIRILNLN---WRFRGNETISMNDTS 236 (292)
Q Consensus 184 ~~g~eHeI~Iec~~~G~~dp~l~V~VDgk~v~qVkrL~---WkFRGNetI~vdg~~ 236 (292)
..|++|.|.|+-.. ..+.++||+..+..-.... -.+.-+..|+|.|+|
T Consensus 123 nDG~WH~V~v~r~~-----~~~~L~VD~~~~~~~~~~~~~~~~l~~~~~lylGG~p 173 (226)
T 2r1d_A 123 NDGKYHVVRFTRSG-----GNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGGKE 173 (226)
T ss_dssp CSSSCEEEEEEEET-----TEEEEEETTSCCEEECCSSCCCCCBCSEEEEEESSTT
T ss_pred cCCCCEEEEEEEeC-----CEEEEEEcCccceEEecCCCcceeccCCCeEEEcccc
Confidence 67899999998762 3689999998644321111 112234568999987
Done!