BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036502
(367 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1H3I|A Chain A, Crystal Structure Of The Histone Methyltransferase Set79
pdb|1H3I|B Chain B, Crystal Structure Of The Histone Methyltransferase Set79
Length = 293
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 33 IWLDGTVYEGDWEEGKMTGKGYIVWPSGAKSEGDFSGGYLHGFGTFTGHDGS-VYRGNWR 91
+ DG+ EG + + + G+G + G +G + G L+G DG +++G ++
Sbjct: 1 FFFDGSTLEGYYVDDALQGQGVYTYEDGGVLQGTYVDGELNGPAQEYDTDGRLIFKGQYK 60
Query: 92 MNIRHGLGRKEYPN 105
NIRHG+ YP+
Sbjct: 61 DNIRHGVCWIYYPD 74
Score = 34.7 bits (78), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 108 IYDGSWKEGVH-----EGSGRYSWNSGNIYIGSWKDGKMSGRGVMKWMNGD-IYDGSWLN 161
+DGS EG + +G G Y++ G + G++ DG+++G +G I+ G + +
Sbjct: 2 FFDGSTLEGYYVDDALQGQGVYTYEDGGVLQGTYVDGELNGPAQEYDTDGRLIFKGQYKD 61
Query: 162 GYRHGSGVYMFADGGHYSG 180
RHG + DGG G
Sbjct: 62 NIRHGVCWIYYPDGGSLVG 80
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 154 IYDGSWLNGY-----RHGSGVYMFADGGHYSGTWSKGLKDGKGKFY 194
+DGS L GY G GVY + DGG GT+ G +G + Y
Sbjct: 2 FFDGSTLEGYYVDDALQGQGVYTYEDGGVLQGTYVDGELNGPAQEY 47
>pdb|1MT6|A Chain A, Structure Of Histone H3 K4-Specific Methyltransferase
Set79 WITH ADOHCY
Length = 280
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 41 EGDWEEGKMTGKGYIVWPSGAKSEGDFSGGYLHGFGTFTGHDGS-VYRGNWRMNIRHGLG 99
EG + + + G+G + G +G + G L+G DG +++G ++ NIRHG+
Sbjct: 3 EGYYVDDALQGQGVYTYEDGGVLQGTYVDGELNGPAQEYDTDGRLIFKGQYKDNIRHGVC 62
Query: 100 RKEYPN 105
YP+
Sbjct: 63 WIYYPD 68
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 110 DGSWKEGVHEGSGRYSWNSGNIYIGSWKDGKMSGRGVMKWMNGD-IYDGSWLNGYRHGSG 168
+G + + +G G Y++ G + G++ DG+++G +G I+ G + + RHG
Sbjct: 3 EGYYVDDALQGQGVYTYEDGGVLQGTYVDGELNGPAQEYDTDGRLIFKGQYKDNIRHGVC 62
Query: 169 VYMFADGGHYSG 180
+ DGG G
Sbjct: 63 WIYYPDGGSLVG 74
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 156 DGSWLNGYRHGSGVYMFADGGHYSGTWSKGLKDGKGKFY 194
+G +++ G GVY + DGG GT+ G +G + Y
Sbjct: 3 EGYYVDDALQGQGVYTYEDGGVLQGTYVDGELNGPAQEY 41
>pdb|1N6C|A Chain A, Structure Of Set79
Length = 297
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 120 GSGRYSWNSGNIYIGSWKDGKMSGRGVMKWMNGD-IYDGSWLNGYRHGSGVYMFADGGHY 178
G G Y++ G + G++ DG+++G +G I+ G + + RHG + DGG
Sbjct: 1 GQGVYTYEDGGVLQGTYVDGELNGPAQEYDTDGRLIFKGQYKDNIRHGVCWIYYPDGGSL 60
Query: 179 SG 180
G
Sbjct: 61 VG 62
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 51 GKGYIVWPSGAKSEGDFSGGYLHGFGTFTGHDGS-VYRGNWRMNIRHGLGRKEYPN 105
G+G + G +G + G L+G DG +++G ++ NIRHG+ YP+
Sbjct: 1 GQGVYTYEDGGVLQGTYVDGELNGPAQEYDTDGRLIFKGQYKDNIRHGVCWIYYPD 56
>pdb|3MAM|A Chain A, A Molecular Switch Changes The Low To The High Affinity
State In The Substrate Binding Protein Afprox
Length = 270
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 19/91 (20%)
Query: 250 GLLRSSGRI--------SHRTSSLDGNWSQRHPSVESISN--DFSSKLLHDSDESQSDMP 299
GLL + G + ++ +W++ + VE IS+ +F+ +L+ SD + P
Sbjct: 87 GLLEADGVVVAAKLGFRDDAALAVRADWAEEN-GVEKISDLAEFADQLVFGSDPEFASRP 145
Query: 300 DGSPVV--------YEREYMQGVLMKETVRN 322
DG P + E + M+ LM E ++N
Sbjct: 146 DGLPQIKKVYGFEFKEVKQMEPTLMYEAIKN 176
>pdb|1SW2|A Chain A, Crystal Structure Of Prox From Archeoglobus Fulgidus In
Complex With Glycine Betaine
Length = 275
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 19/91 (20%)
Query: 250 GLLRSSGRISHR--------TSSLDGNWSQRHPSVESISN--DFSSKLLHDSDESQSDMP 299
GLL + G + ++ +W++ + VE IS+ +F+ +L+ SD + P
Sbjct: 92 GLLEADGVVVAAKLGFRDDYALAVRADWAEEN-GVEKISDLAEFADQLVFGSDPEFASRP 150
Query: 300 DGSPVV--------YEREYMQGVLMKETVRN 322
DG P + E + M+ LM E ++N
Sbjct: 151 DGLPQIKKVYGFEFKEVKQMEPTLMYEAIKN 181
>pdb|1SW4|A Chain A, Crystal Structure Of Prox From Archeoglobus Fulgidus In
Complex With Trimethyl Ammonium
pdb|1SW4|B Chain B, Crystal Structure Of Prox From Archeoglobus Fulgidus In
Complex With Trimethyl Ammonium
pdb|1SW5|A Chain A, Crystal Structure Of Prox From Archeoglobus Fulgidus In
The Ligand Free Form
pdb|1SW5|B Chain B, Crystal Structure Of Prox From Archeoglobus Fulgidus In
The Ligand Free Form
pdb|1SW5|C Chain C, Crystal Structure Of Prox From Archeoglobus Fulgidus In
The Ligand Free Form
pdb|1SW5|D Chain D, Crystal Structure Of Prox From Archeoglobus Fulgidus In
The Ligand Free Form
Length = 275
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 19/91 (20%)
Query: 250 GLLRSSGRISHR--------TSSLDGNWSQRHPSVESISN--DFSSKLLHDSDESQSDMP 299
GLL + G + ++ +W++ + VE IS+ +F+ +L+ SD + P
Sbjct: 92 GLLEADGVVVAAKLGFRDDYALAVRADWAEEN-GVEKISDLAEFADQLVFGSDPEFASRP 150
Query: 300 DGSPVV--------YEREYMQGVLMKETVRN 322
DG P + E + M+ LM E ++N
Sbjct: 151 DGLPQIKKVYGFEFKEVKQMEPTLMYEAIKN 181
>pdb|3OY2|A Chain A, Crystal Structure Of A Putative Glycosyltransferase From
Paramecium Bursaria Chlorella Virus Ny2a
pdb|3OY2|B Chain B, Crystal Structure Of A Putative Glycosyltransferase From
Paramecium Bursaria Chlorella Virus Ny2a
pdb|3OY7|A Chain A, Crystal Structure Of A Virus Encoded Glycosyltransferase
In Complex With Gdp-Mannose
pdb|3OY7|B Chain B, Crystal Structure Of A Virus Encoded Glycosyltransferase
In Complex With Gdp-Mannose
Length = 413
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 214 DNTKGLPSQGSSIN--SEGSETSKPRVKRSLSERISVGGLLRSSGRISHRT 262
++ +GL QG + SE + KP + ++ I +G L + G+ SHRT
Sbjct: 58 EHVRGLNEQGFYYSGLSEFIDVHKPDIVMIYNDPIVIGNYLLAMGKCSHRT 108
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.135 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,246,451
Number of Sequences: 62578
Number of extensions: 761755
Number of successful extensions: 1257
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1236
Number of HSP's gapped (non-prelim): 28
length of query: 367
length of database: 14,973,337
effective HSP length: 100
effective length of query: 267
effective length of database: 8,715,537
effective search space: 2327048379
effective search space used: 2327048379
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)