Query 036502
Match_columns 367
No_of_seqs 273 out of 1685
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 03:45:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036502.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036502hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h3i_A Histone H3 lysine 4 spe 99.9 8.7E-27 3E-31 223.8 17.1 131 57-187 2-139 (293)
2 1h3i_A Histone H3 lysine 4 spe 99.9 1.1E-26 3.7E-31 223.2 16.6 130 35-164 3-139 (293)
3 2f69_A Histone-lysine N-methyl 99.0 2.4E-10 8.2E-15 107.8 5.5 54 134-187 3-59 (261)
4 2f69_A Histone-lysine N-methyl 98.9 8.8E-10 3E-14 103.9 4.6 56 18-73 2-60 (261)
5 2eqj_A Metal-response element- 21.8 81 0.0028 22.9 3.3 36 10-45 23-59 (66)
6 4hcz_A PHD finger protein 1; p 16.8 1.4E+02 0.0048 21.0 3.6 37 10-46 13-50 (58)
7 2xk0_A Polycomb protein PCL; t 13.5 1.7E+02 0.0059 21.3 3.4 36 9-45 24-59 (69)
8 2qqr_A JMJC domain-containing 11.7 4E+02 0.014 21.3 5.5 15 31-45 71-85 (118)
9 2xdp_A Lysine-specific demethy 11.5 3.2E+02 0.011 22.0 4.9 16 31-46 72-87 (123)
10 4dxr_B Nesprin-1; beta-sandwic 10.5 62 0.0021 20.4 0.2 9 354-362 20-28 (35)
No 1
>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A
Probab=99.94 E-value=8.7e-27 Score=223.79 Aligned_cols=131 Identities=20% Similarity=0.348 Sum_probs=92.5
Q ss_pred eCCCCEEEEEEeCCEEeeEEEEEecCCcEEEEEEEeEEeeeeEEEEeCCCC-eeEEEeeCCeEeeeeEEEcCCCcEEEEE
Q 036502 57 WPSGAKSEGDFSGGYLHGFGTFTGHDGSVYRGNWRMNIRHGLGRKEYPNSD-IYDGSWKEGVHEGSGRYSWNSGNIYIGS 135 (367)
Q Consensus 57 ~~~G~~Y~G~f~ng~~~G~G~~~~~ng~~Y~G~f~~g~~~G~G~~~~~nG~-~YeG~f~~g~~~G~G~~~~~nG~~Y~G~ 135 (367)
|+||.+|+|+|+++++||.|+++++||.+|+|+|+++++||.|+++++||. +|+|+|++++++|.|+++++||.+|+|+
T Consensus 2 ~~~G~~Y~G~~~~g~~~G~G~~~~~~G~~Y~G~~~~g~~~G~G~~~~~~G~~~y~G~~~~g~~~G~G~~~~~~G~~y~G~ 81 (293)
T 1h3i_A 2 FFDGSTLEGYYVDDALQGQGVYTYEDGGVLQGTYVDGELNGPAQEYDTDGRLIFKGQYKDNIRHGVCWIYYPDGGSLVGE 81 (293)
T ss_dssp CSSSCCCCEEEETTEEEEEEEEECTTSCEEEEEEETTEEEEEEEEECSSSCEEEEEEEETTEECSEEEEECTTSCEEEEE
T ss_pred cCCCCEEEEEEECCEeeEEEEEEECCCCEEEEEEECCEEEeCEEEEECCCCEEEEEEEECCEEEeeEEEEECCCCEEEEE
Confidence 344555555555555555555555555555555555555556666666666 6777777777777777777788888888
Q ss_pred Ee-CCCeeee-EEEEecCCc-EEEEEEeCCeEe-EeEEEE--eCCCCEEEEEEcCCee
Q 036502 136 WK-DGKMSGR-GVMKWMNGD-IYDGSWLNGYRH-GSGVYM--FADGGHYSGTWSKGLK 187 (367)
Q Consensus 136 f~-~g~~~G~-G~~~~~nG~-~y~G~w~nG~~h-G~G~~~--~~dG~~y~G~w~~G~~ 187 (367)
|+ ++++||. |+++++||. .|+|.|++|++| |.|+++ +++|..+.|.|.+++.
T Consensus 82 ~~~~g~~~G~gG~~~~~~G~~~y~G~~~~g~~~~G~~~~~~~~~~g~~~~g~w~~g~~ 139 (293)
T 1h3i_A 82 VNEDGEMTGEKIAYVYPDERTALYGKFIDGEMIEGKLATLMSTEEGRPHFELMPGNSV 139 (293)
T ss_dssp CCTTSCSCEEEEEEECTTSSEEEEEEEETTEEEEEEEEEEEECTTTSCEEEECSSCCE
T ss_pred EeECCeEeCCeEEEEECCCCEEEEEEEECCEEEccceEEEEecCCcceEEeEEcCCce
Confidence 88 8888888 888888888 488888888888 888877 7788888888877665
No 2
>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A
Probab=99.94 E-value=1.1e-26 Score=223.17 Aligned_cols=130 Identities=24% Similarity=0.421 Sum_probs=67.7
Q ss_pred cCCcEEEEEEECCEEEeEEEEEeCCCCEEEEEEeCCEEeeEEEEEecCCc-EEEEEEEeEEeeeeEEEEeCCCCeeEEEe
Q 036502 35 LDGTVYEGDWEEGKMTGKGYIVWPSGAKSEGDFSGGYLHGFGTFTGHDGS-VYRGNWRMNIRHGLGRKEYPNSDIYDGSW 113 (367)
Q Consensus 35 ~nG~~YeG~w~ng~~~G~G~~~~~~G~~Y~G~f~ng~~~G~G~~~~~ng~-~Y~G~f~~g~~~G~G~~~~~nG~~YeG~f 113 (367)
+||++|+|+|+++++||.|++++++|.+|+|+|+++++||.|+++++||. +|+|+|+++++||.|+++++||.+|+|.|
T Consensus 3 ~~G~~Y~G~~~~g~~~G~G~~~~~~G~~Y~G~~~~g~~~G~G~~~~~~G~~~y~G~~~~g~~~G~G~~~~~~G~~y~G~~ 82 (293)
T 1h3i_A 3 FDGSTLEGYYVDDALQGQGVYTYEDGGVLQGTYVDGELNGPAQEYDTDGRLIFKGQYKDNIRHGVCWIYYPDGGSLVGEV 82 (293)
T ss_dssp SSSCCCCEEEETTEEEEEEEEECTTSCEEEEEEETTEEEEEEEEECSSSCEEEEEEEETTEECSEEEEECTTSCEEEEEC
T ss_pred CCCCEEEEEEECCEeeEEEEEEECCCCEEEEEEECCEEEeCEEEEECCCCEEEEEEEECCEEEeeEEEEECCCCEEEEEE
Confidence 44444444444444444444444444444444444444444444444444 45555555555555555555555555555
Q ss_pred e-CCeEeee-eEEEcCCCc-EEEEEEeCCCee-eeEEEE--ecCCcEEEEEEeCCeE
Q 036502 114 K-EGVHEGS-GRYSWNSGN-IYIGSWKDGKMS-GRGVMK--WMNGDIYDGSWLNGYR 164 (367)
Q Consensus 114 ~-~g~~~G~-G~~~~~nG~-~Y~G~f~~g~~~-G~G~~~--~~nG~~y~G~w~nG~~ 164 (367)
+ +++++|. |+++++||. +|+|.|++|+++ |.|+++ ++||..+.|.|.++.+
T Consensus 83 ~~~g~~~G~gG~~~~~~G~~~y~G~~~~g~~~~G~~~~~~~~~~g~~~~g~w~~g~~ 139 (293)
T 1h3i_A 83 NEDGEMTGEKIAYVYPDERTALYGKFIDGEMIEGKLATLMSTEEGRPHFELMPGNSV 139 (293)
T ss_dssp CTTSCSCEEEEEEECTTSSEEEEEEEETTEEEEEEEEEEEECTTTSCEEEECSSCCE
T ss_pred eECCeEeCCeEEEEECCCCEEEEEEEECCEEEccceEEEEecCCcceEEeEEcCCce
Confidence 5 5555555 555555555 355666665555 555555 5556556666555443
No 3
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A*
Probab=99.00 E-value=2.4e-10 Score=107.79 Aligned_cols=54 Identities=20% Similarity=0.287 Sum_probs=34.4
Q ss_pred EEEeCCCeeeeEEEEecCCcEEEEEEe-CCeEeEe-EEEEeCCCCE-EEEEEcCCee
Q 036502 134 GSWKDGKMSGRGVMKWMNGDIYDGSWL-NGYRHGS-GVYMFADGGH-YSGTWSKGLK 187 (367)
Q Consensus 134 G~f~~g~~~G~G~~~~~nG~~y~G~w~-nG~~hG~-G~~~~~dG~~-y~G~w~~G~~ 187 (367)
|+|++|++||.|+++|+||.+|+|+|. +|.+||. |+|+|+||.+ |+|.|.+|.+
T Consensus 3 g~~~~~~~~G~g~~~~~dG~~y~G~~~~~~~~~G~~g~y~y~d~~~~~~G~~~~g~~ 59 (261)
T 2f69_A 3 MGYKDNIRHGVCWIYYPDGGSLVGEVNEDGEMTGEKIAYVYPDERTALYGKFIDGEM 59 (261)
T ss_dssp --------CCCEEEECTTSCEEEECCCTTSCCCEEEEEEECTTSSEEEEEEEETTEE
T ss_pred ceecCCceecceEEEeCCCCEEEEEEeeCCcCccceEEEEeCCCCEEEEEEEeCCcE
Confidence 667777777777777777777777777 7777777 7777777776 7777777765
No 4
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A*
Probab=98.88 E-value=8.8e-10 Score=103.93 Aligned_cols=56 Identities=25% Similarity=0.424 Sum_probs=40.5
Q ss_pred EEEEECCeEeeEEEEEEcCCcEEEEEEE-CCEEEeE-EEEEeCCCCE-EEEEEeCCEEe
Q 036502 18 VGNFEGELPHGKGKYIWLDGTVYEGDWE-EGKMTGK-GYIVWPSGAK-SEGDFSGGYLH 73 (367)
Q Consensus 18 ~G~~~~g~~~G~G~~~~~nG~~YeG~w~-ng~~~G~-G~~~~~~G~~-Y~G~f~ng~~~ 73 (367)
.|+|+++++||.|+++|+||..|+|+|. +|.+||. |+++||||.+ |+|+|.++.+.
T Consensus 2 ~g~~~~~~~~G~g~~~~~dG~~y~G~~~~~~~~~G~~g~y~y~d~~~~~~G~~~~g~~~ 60 (261)
T 2f69_A 2 AMGYKDNIRHGVCWIYYPDGGSLVGEVNEDGEMTGEKIAYVYPDERTALYGKFIDGEMI 60 (261)
T ss_dssp ---------CCCEEEECTTSCEEEECCCTTSCCCEEEEEEECTTSSEEEEEEEETTEEE
T ss_pred CceecCCceecceEEEeCCCCEEEEEEeeCCcCccceEEEEeCCCCEEEEEEEeCCcEe
Confidence 3788888888888888888888888888 8888888 8888888888 88888888773
No 5
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=21.84 E-value=81 Score=22.90 Aligned_cols=36 Identities=17% Similarity=0.238 Sum_probs=20.2
Q ss_pred EecCCCEEEEEEECCeE-eeEEEEEEcCCcEEEEEEE
Q 036502 10 SFTNGDIYVGNFEGELP-HGKGKYIWLDGTVYEGDWE 45 (367)
Q Consensus 10 ~~~nG~~Y~G~~~~g~~-~G~G~~~~~nG~~YeG~w~ 45 (367)
.|.||.+|.|.+..-.. .|...+.|.|++.+-=.|+
T Consensus 23 ~wtDGl~Y~gtI~~V~~~~gtC~V~F~D~s~~w~~~k 59 (66)
T 2eqj_A 23 RWSDGLFYLGTIKKINILKQSCFIIFEDSSKSWVLWK 59 (66)
T ss_dssp ECTTSCEEEEEEEEEETTTTEEEEEETTTEEEEEETT
T ss_pred EEccCcEEEeEEEEEccCCcEEEEEEccCCEEEEEee
Confidence 45666666666644322 3666666666665554443
No 6
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=16.75 E-value=1.4e+02 Score=21.03 Aligned_cols=37 Identities=16% Similarity=0.307 Sum_probs=24.7
Q ss_pred EecCCCEEEEEEECCeEee-EEEEEEcCCcEEEEEEEC
Q 036502 10 SFTNGDIYVGNFEGELPHG-KGKYIWLDGTVYEGDWEE 46 (367)
Q Consensus 10 ~~~nG~~Y~G~~~~g~~~G-~G~~~~~nG~~YeG~w~n 46 (367)
.++||.+|-|++..-...+ .....|.|++.+.-.|++
T Consensus 13 rwsDG~fYlGtI~~V~~~~~~clV~F~D~s~~W~~~kd 50 (58)
T 4hcz_A 13 RWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWKD 50 (58)
T ss_dssp ECTTSCEEEEEEEEEETTTTEEEEEETTSCEEEEEGGG
T ss_pred EecCCCEEeEEEEEEecCCCEEEEEEcCCCeEEEEhHH
Confidence 4778888888876533333 667777777777666654
No 7
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=13.52 E-value=1.7e+02 Score=21.30 Aligned_cols=36 Identities=11% Similarity=0.097 Sum_probs=20.3
Q ss_pred EEecCCCEEEEEEECCeEeeEEEEEEcCCcEEEEEEE
Q 036502 9 KSFTNGDIYVGNFEGELPHGKGKYIWLDGTVYEGDWE 45 (367)
Q Consensus 9 ~~~~nG~~Y~G~~~~g~~~G~G~~~~~nG~~YeG~w~ 45 (367)
..+.||.+|-|++.+.. .......|.|.+.+.-.|+
T Consensus 24 ~rw~DG~fYLGtIVd~~-~~~ClV~FeD~S~~Wv~~k 59 (69)
T 2xk0_A 24 IKCNDGRFYLGTIIDQT-SDQYLIRFDDQSEQWCEPD 59 (69)
T ss_dssp EECTTSCEEEEEEEEEC-SSCEEEEETTCCEEEECTT
T ss_pred EEecCCCEEEEEEEecC-CceEEEEecCCcceeeeHH
Confidence 45677777777765432 3355555566555554443
No 8
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=11.69 E-value=4e+02 Score=21.33 Aligned_cols=15 Identities=33% Similarity=0.784 Sum_probs=10.3
Q ss_pred EEEEcCCcEEEEEEE
Q 036502 31 KYIWLDGTVYEGDWE 45 (367)
Q Consensus 31 ~~~~~nG~~YeG~w~ 45 (367)
++.|.||.+|.+.|.
T Consensus 71 ~V~W~DG~~y~a~f~ 85 (118)
T 2qqr_A 71 QVRWTDGQVYGAKFV 85 (118)
T ss_dssp EEECTTSCEEEEEEE
T ss_pred EEEcCCCCEeeeEEe
Confidence 345777777777776
No 9
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=11.50 E-value=3.2e+02 Score=22.05 Aligned_cols=16 Identities=25% Similarity=0.642 Sum_probs=11.1
Q ss_pred EEEEcCCcEEEEEEEC
Q 036502 31 KYIWLDGTVYEGDWEE 46 (367)
Q Consensus 31 ~~~~~nG~~YeG~w~n 46 (367)
.+.|.||.+|.+.|..
T Consensus 72 ~V~W~DG~~y~a~f~g 87 (123)
T 2xdp_A 72 QVKWPDGKLYGAKYFG 87 (123)
T ss_dssp EEECTTSCEEEEEEEE
T ss_pred EEEcCCCCEEeEEEee
Confidence 4457788888877753
No 10
>4dxr_B Nesprin-1; beta-sandwich, LINC complex, structural protein; HET: DMU; 2.32A {Homo sapiens} PDB: 4dxs_B*
Probab=10.49 E-value=62 Score=20.39 Aligned_cols=9 Identities=44% Similarity=0.597 Sum_probs=6.6
Q ss_pred ceeeeeeee
Q 036502 354 RSYYLMLNL 362 (367)
Q Consensus 354 ~sy~lmlnl 362 (367)
||+++||.-
T Consensus 20 RSF~pML~Y 28 (35)
T 4dxr_B 20 RSFHPMLRY 28 (35)
T ss_dssp GSSSCEEEE
T ss_pred HHhHHHHhc
Confidence 788888753
Done!