BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036503
(112 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
pdb|3OZI|B Chain B, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
Length = 204
Score = 57.8 bits (138), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 39/56 (69%), Gaps = 2/56 (3%)
Query: 51 QVVIPVFYRVDPSDVRNQTGSFGDSFSKLEERSKENSEKLQTWRNALKEAASLSGF 106
++++P+FY VDPSDVR+QTG + +F K +K + + +Q W++ALK+ L G+
Sbjct: 124 RIILPIFYMVDPSDVRHQTGCYKKAFRK--HANKFDGQTIQNWKDALKKVGDLKGW 177
>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana
Length = 176
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 53 VIPVFYRVDPSDVRNQTGSFGDSFSKLEERSKENSEKLQTWRNALKEAASLSG 105
V+P+FY V+P+ VR QTG + F K S+E+ EK+ WR AL A LSG
Sbjct: 98 VMPIFYGVEPNHVRWQTGVLAEQFKK--HASREDPEKVLKWRQALTNFAQLSG 148
>pdb|1QBB|A Chain A, Bacterial Chitobiase Complexed With Chitobiose (Dinag)
pdb|1QBA|A Chain A, Bacterial Chitobiase, Glycosyl Hydrolase Family 20
Length = 858
Score = 28.9 bits (63), Expect = 0.79, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 63 SDVRNQTGSFGDSFSKLEERSKENSEKLQTWRNALKEAASLSGFPSQNIG 112
+D+ + FG SKL + +++Q W++ LK+A S F + +G
Sbjct: 561 ADMEHLPSYFGQEVSKLVK--AHGIDRMQAWQDGLKDAESSKAFATSRVG 608
>pdb|1C7S|A Chain A, Beta-N-Acetylhexosaminidase Mutant D539a Complexed With
Di- N-Acetyl-Beta-D-Glucosamine (Chitobiase)
Length = 858
Score = 28.9 bits (63), Expect = 0.79, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 63 SDVRNQTGSFGDSFSKLEERSKENSEKLQTWRNALKEAASLSGFPSQNIG 112
+D+ + FG SKL + +++Q W++ LK+A S F + +G
Sbjct: 561 ADMEHLPSYFGQEVSKLVK--AHGIDRMQAWQDGLKDAESSKAFATSRVG 608
>pdb|1C7T|A Chain A, Beta-N-Acetylhexosaminidase Mutant E540d Complexed With
Di- N Acetyl-D-Glucosamine (Chitobiase)
Length = 858
Score = 28.9 bits (63), Expect = 0.79, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 63 SDVRNQTGSFGDSFSKLEERSKENSEKLQTWRNALKEAASLSGFPSQNIG 112
+D+ + FG SKL + +++Q W++ LK+A S F + +G
Sbjct: 561 ADMEHLPSYFGQEVSKLVK--AHGIDRMQAWQDGLKDAESSKAFATSRVG 608
>pdb|3V0A|B Chain B, 2.7 Angstrom Crystal Structure Of BontAI IN COMPLEX WITH
NTNHA
pdb|3V0B|B Chain B, 3.9 Angstrom Crystal Structure Of BontAI IN COMPLEX WITH
NTNHA
Length = 1196
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 19 YIQISLDK---NIRTFIDDQLNRGDEISESLKEYGQVVIPVFYRVDPSDVRNQT 69
YI IS+D+ + FIDD L + I E L Y +I + +PS + T
Sbjct: 967 YITISVDRLKEQLLIFIDDNLVANESIKEILNIYSSNIISLLSENNPSYIEGLT 1020
>pdb|1ZXA|A Chain A, Solution Structure Of The Coiled-Coil Domain Of Cgmp-
Dependent Protein Kinase Ia
pdb|1ZXA|B Chain B, Solution Structure Of The Coiled-Coil Domain Of Cgmp-
Dependent Protein Kinase Ia
Length = 67
Score = 25.4 bits (54), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 74 DSFSKLEERSKENSEKLQTWRNALKEAASLSGFPSQNIG 112
+ +LE+R E E++Q + L + S+ PS +IG
Sbjct: 25 ERIKELEKRLSEKEEEIQELKRKLHKCQSVLPVPSTHIG 63
>pdb|3L3B|A Chain A, Crystal Structure Of Isoprenoid Biosynthesis Protein With
Amidotransferase-Like Domain From Ehrlichia Chaffeensis
At 1.90a Resolution
pdb|3L3B|B Chain B, Crystal Structure Of Isoprenoid Biosynthesis Protein With
Amidotransferase-Like Domain From Ehrlichia Chaffeensis
At 1.90a Resolution
Length = 242
Score = 25.4 bits (54), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 59 RVDPSDVRNQTGSFG--DSFSKLEERSKENSEKLQTWRNALKE 99
RV+ D+ G +G +FS L + KEN L ++NA++E
Sbjct: 104 RVEEFDMLVIPGGYGVAKNFSNLFDEDKENDYILPEFKNAVRE 146
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.129 0.349
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,054,968
Number of Sequences: 62578
Number of extensions: 109606
Number of successful extensions: 290
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 270
Number of HSP's gapped (non-prelim): 19
length of query: 112
length of database: 14,973,337
effective HSP length: 76
effective length of query: 36
effective length of database: 10,217,409
effective search space: 367826724
effective search space used: 367826724
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 45 (21.9 bits)