BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036503
(112 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1
Length = 1144
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 44/70 (62%)
Query: 36 LNRGDEISESLKEYGQVVIPVFYRVDPSDVRNQTGSFGDSFSKLEERSKENSEKLQTWRN 95
LN +I E + Q VIP+FY VDPS VRNQ SF +F + E + K++ E +Q WR
Sbjct: 84 LNELVKIMECKTRFKQTVIPIFYDVDPSHVRNQKESFAKAFEEHETKYKDDVEGIQRWRI 143
Query: 96 ALKEAASLSG 105
AL EAA+L G
Sbjct: 144 ALNEAANLKG 153
>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis
thaliana GN=At4g11170 PE=2 SV=1
Length = 1095
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 41 EISESLKEYGQVVIPVFYRVDPSDVRNQTGSFGDSFSKLEERSKENSEKLQTWRNALKEA 100
EI + +E G V+PVFY+VDPSD+R QTG FG SF LE + E+ WR AL +A
Sbjct: 87 EIMKCKEEQGLKVMPVFYKVDPSDIRKQTGKFGMSF--LETCCGKTEERQHNWRRALTDA 144
Query: 101 ASLSGFPSQN 110
A++ G QN
Sbjct: 145 ANILGDHPQN 154
>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis
thaliana GN=SNC1 PE=1 SV=3
Length = 1301
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Query: 36 LNRGDEISESLKEYGQVVIPVFYRVDPSDVRNQTGSFGDSFSKLEERSKENSE-KLQTWR 94
LN EI + Q+VIP+F+ VD S+V+ QTG FG F EE K SE + Q+W+
Sbjct: 82 LNELVEIHKCYTNLNQMVIPIFFHVDASEVKKQTGEFGKVF---EETCKAKSEDEKQSWK 138
Query: 95 NALKEAASLSGF 106
AL A ++G+
Sbjct: 139 QALAAVAVMAGY 150
>sp|Q9FHE9|P2A08_ARATH Protein PHLOEM PROTEIN 2-LIKE A8 OS=Arabidopsis thaliana GN=PP2A8
PE=2 SV=1
Length = 354
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 38/66 (57%)
Query: 41 EISESLKEYGQVVIPVFYRVDPSDVRNQTGSFGDSFSKLEERSKENSEKLQTWRNALKEA 100
EI + + + G IP+FY++ PS V G FGD+F L+E+ K + E+ Q W+ AL+
Sbjct: 89 EIKDCINQGGLNAIPIFYKLAPSSVLELKGGFGDTFRVLKEKYKNDPERTQKWQEALESI 148
Query: 101 ASLSGF 106
L G
Sbjct: 149 PKLKGL 154
>sp|Q9FHE8|P2A06_ARATH Protein PHLOEM PROTEIN 2-LIKE A6 OS=Arabidopsis thaliana GN=PP2A6
PE=2 SV=1
Length = 392
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 5/99 (5%)
Query: 9 RTPETTLLAIYIQISLDKNIRTFIDDQLNRGDEISESLKEYGQVVIPVFYRVDPSDVRNQ 68
R E+ L + + ++ R LN +I E + +VIP+FY+V PS V+
Sbjct: 63 RIEESELALVIFSVDFTRSHRC-----LNELAKIKERKDQGRLIVIPIFYKVKPSAVKFL 117
Query: 69 TGSFGDSFSKLEERSKENSEKLQTWRNALKEAASLSGFP 107
G FGD+F LE ++ Q W+ AL+ G P
Sbjct: 118 EGKFGDNFRALERNNRHMLPITQKWKEALESIPGSIGMP 156
>sp|Q9C5Q9|P2A05_ARATH Protein PHLOEM PROTEIN 2-LIKE A5 OS=Arabidopsis thaliana GN=PP2A5
PE=2 SV=1
Length = 411
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 36/63 (57%)
Query: 41 EISESLKEYGQVVIPVFYRVDPSDVRNQTGSFGDSFSKLEERSKENSEKLQTWRNALKEA 100
+I E + + ++IP+FYR+D V++ TG FGD+F L ++ + +KL W AL
Sbjct: 97 KIKEYMDQNRLIIIPIFYRLDLDVVKDLTGKFGDNFWDLVDKYQPEPKKLHKWTEALFSV 156
Query: 101 ASL 103
L
Sbjct: 157 CEL 159
>sp|Q9SYC9|VAP14_ARATH Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14
PE=2 SV=1
Length = 571
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%)
Query: 41 EISESLKEYGQVVIPVFYRVDPSDVRNQTGSFGDSFSKLEERSKENSEKLQTWRNALKEA 100
++ E +++ VV+PVFYR++ + + G+FGD+ LE + E++Q W+ AL
Sbjct: 433 KMKEQMEQGKLVVVPVFYRLNATACKRFMGAFGDNLRNLEWEYRSEPERIQKWKEALSSV 492
Query: 101 ASLSGFPS 108
S G S
Sbjct: 493 FSNIGLTS 500
>sp|Q77MT3|VG06B_GAHVM Uncharacterized gene 6b protein OS=Gallid herpesvirus 2 (strain
Chicken/Md5/ATCC VR-987) GN=MDV006 PE=4 SV=1
Length = 93
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 55 PVFY-RVDPSDVRNQTGSFGDSFSKLEERSKENSEKLQTWRNALKEAASLSGFPSQ 109
P F+ D + RN T SFGD ER++ TWR+ + L+ P +
Sbjct: 31 PTFHLETDTATTRNGTSSFGDRIRSFCERARSLISNFVTWRSRNESCEVLAEIPQE 86
>sp|Q9DGV6|VG06A_GAHVM Uncharacterized gene 6a protein OS=Gallid herpesvirus 2 (strain
Chicken/Md5/ATCC VR-987) GN=MDV006 PE=4 SV=1
Length = 85
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 55 PVFY-RVDPSDVRNQTGSFGDSFSKLEERSKENSEKLQTWRNALKEAASLSGFPSQ 109
P F+ D + RN T SFGD ER++ TWR+ + L+ P +
Sbjct: 23 PTFHLETDTATTRNGTSSFGDRIRSFCERARSLISNFVTWRSRNESCEVLAEIPQE 78
>sp|Q1WU92|TRMD_LACS1 tRNA (guanine-N(1)-)-methyltransferase OS=Lactobacillus salivarius
(strain UCC118) GN=trmD PE=3 SV=1
Length = 250
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 4 SVSEERTPETTLLAIYIQI-SLDKNIRTFIDDQLNRGDEISESLKEYGQVVIPVFYRVDP 62
SV+EE + E L I D+ IR + D+++ GD + + VVI R+ P
Sbjct: 96 SVAEELSKEDHLTFICGHYEGYDERIRAKVTDEISLGDFVLTGGELGAMVVIDATVRLLP 155
Query: 63 SDVRNQTGSFGDSFS 77
+ N + GDSFS
Sbjct: 156 DVLGNNESASGDSFS 170
>sp|C0ZFN1|TRMD_BREBN tRNA (guanine-N(1)-)-methyltransferase OS=Brevibacillus brevis
(strain 47 / JCM 6285 / NBRC 100599) GN=trmD PE=3 SV=1
Length = 243
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 25 DKNIR-TFIDDQLNRGDEISESLKEYGQVVIPVFYRVDPSDVRNQTGSFGDSFS 77
D+ IR + D+++ GD + + VVI R+ P + NQT + DSFS
Sbjct: 117 DERIREHLVTDEISIGDYVLTGGELAAMVVIDSVVRLQPGALGNQTSAVEDSFS 170
>sp|Q03W52|TRMD_LEUMM tRNA (guanine-N(1)-)-methyltransferase OS=Leuconostoc mesenteroides
subsp. mesenteroides (strain ATCC 8293 / NCDO 523)
GN=trmD PE=3 SV=1
Length = 243
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%)
Query: 25 DKNIRTFIDDQLNRGDEISESLKEYGQVVIPVFYRVDPSDVRNQTGSFGDSF 76
D+ IR +DD+++ GD + + V+I R P + N + GDSF
Sbjct: 118 DERIRELVDDEISLGDYVLTGGELGAMVIIDATVRFLPEILGNAASAEGDSF 169
>sp|B5YK96|TRMD_THEYD tRNA (guanine-N(1)-)-methyltransferase OS=Thermodesulfovibrio
yellowstonii (strain ATCC 51303 / DSM 11347 / YP87)
GN=trmD PE=3 SV=1
Length = 255
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 31/56 (55%)
Query: 23 SLDKNIRTFIDDQLNRGDEISESLKEYGQVVIPVFYRVDPSDVRNQTGSFGDSFSK 78
+D+ I++FID++++ GD + + V+I R+ P + ++ S DSF K
Sbjct: 117 GIDERIKSFIDEEISIGDYVLSGGELPALVIIDSIVRLLPGALGDELSSEEDSFMK 172
>sp|Q54468|CHB_SERMA Chitobiase OS=Serratia marcescens GN=chb PE=1 SV=1
Length = 885
Score = 28.9 bits (63), Expect = 9.5, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 63 SDVRNQTGSFGDSFSKLEERSKENSEKLQTWRNALKEAASLSGFPSQNIG 112
+D+ + FG SKL + +++Q W++ LK+A S F + +G
Sbjct: 588 ADMEHLPSYFGQEVSKLVK--AHGIDRMQAWQDGLKDAESSKAFATSRVG 635
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.129 0.349
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,367,355
Number of Sequences: 539616
Number of extensions: 1384933
Number of successful extensions: 3762
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 3738
Number of HSP's gapped (non-prelim): 33
length of query: 112
length of database: 191,569,459
effective HSP length: 80
effective length of query: 32
effective length of database: 148,400,179
effective search space: 4748805728
effective search space used: 4748805728
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)