Query 036503
Match_columns 112
No_of_seqs 121 out of 1019
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 02:43:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036503.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036503hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 7.7E-37 1.7E-41 266.2 9.2 109 1-112 15-158 (1153)
2 PLN03194 putative disease resi 100.0 4.4E-34 9.6E-39 206.3 8.5 95 1-109 29-156 (187)
3 PF01582 TIR: TIR domain; Int 99.5 1E-15 2.2E-20 105.4 -0.6 97 1-98 1-140 (141)
4 smart00255 TIR Toll - interleu 99.3 3.7E-12 8.1E-17 86.4 6.6 100 1-102 4-139 (140)
5 PF13676 TIR_2: TIR domain; PD 98.2 7.1E-07 1.5E-11 57.6 1.3 40 1-43 1-40 (102)
6 KOG3678 SARM protein (with ste 92.7 0.15 3.3E-06 42.7 3.9 39 1-41 615-654 (832)
7 PF08357 SEFIR: SEFIR domain; 71.6 3.8 8.3E-05 27.7 2.4 36 1-36 3-40 (150)
8 PRK13883 conjugal transfer pro 67.9 8.5 0.00018 27.2 3.5 55 8-63 59-113 (151)
9 PF07283 TrbH: Conjugal transf 54.9 21 0.00046 24.3 3.5 49 14-64 36-84 (121)
10 cd02426 Pol_gamma_b_Cterm C-te 50.8 36 0.00077 22.9 4.2 50 14-67 44-97 (128)
11 cd01241 PH_Akt Akt pleckstrin 48.3 18 0.00038 23.3 2.3 17 85-101 86-102 (102)
12 COG2388 Predicted acetyltransf 47.2 8.8 0.00019 25.2 0.7 27 30-57 45-79 (99)
13 PF03129 HGTP_anticodon: Antic 47.2 17 0.00037 22.3 2.0 31 14-44 16-47 (94)
14 COG1155 NtpA Archaeal/vacuolar 47.1 29 0.00064 29.5 3.8 91 14-105 238-345 (588)
15 PRK06946 lipid A biosynthesis 44.3 38 0.00083 25.7 3.9 49 14-62 168-232 (293)
16 cd04893 ACT_GcvR_1 ACT domains 44.0 29 0.00062 21.0 2.6 27 3-31 4-30 (77)
17 PHA00407 phage lambda Rz1-like 43.6 16 0.00035 23.1 1.4 23 87-109 25-52 (84)
18 PF02337 Gag_p10: Retroviral G 43.0 18 0.00039 23.4 1.6 17 14-30 9-25 (90)
19 PF12128 DUF3584: Protein of u 42.9 4 8.8E-05 37.2 -1.9 28 51-79 34-61 (1201)
20 TIGR00295 conserved hypothetic 41.4 52 0.0011 23.0 4.0 32 72-103 132-163 (164)
21 cd01251 PH_centaurin_alpha Cen 40.8 33 0.00071 22.0 2.7 19 85-103 84-102 (103)
22 PRK08733 lipid A biosynthesis 40.3 38 0.00083 25.9 3.4 44 15-58 183-242 (306)
23 PRK13835 conjugal transfer pro 40.2 53 0.0012 23.1 3.8 42 9-63 66-107 (145)
24 PRK05646 lipid A biosynthesis 38.5 41 0.00089 25.7 3.3 44 15-58 182-241 (310)
25 cd01266 PH_Gab Gab (Grb2-assoc 38.2 32 0.00069 22.2 2.3 17 85-101 92-108 (108)
26 COG3286 Uncharacterized protei 37.6 19 0.00042 26.7 1.3 81 17-104 92-197 (204)
27 cd01219 PH_FGD FGD (faciogenit 37.5 35 0.00077 21.8 2.4 18 85-102 83-100 (101)
28 COG0529 CysC Adenylylsulfate k 37.4 23 0.00051 26.1 1.7 21 14-34 38-58 (197)
29 PF03279 Lip_A_acyltrans: Bact 37.3 37 0.00081 25.5 2.9 43 16-58 181-239 (295)
30 PF13840 ACT_7: ACT domain ; P 37.2 31 0.00067 20.3 2.0 20 14-33 22-41 (65)
31 PF14542 Acetyltransf_CG: GCN5 36.8 41 0.00088 20.6 2.5 27 30-57 28-62 (78)
32 PF00169 PH: PH domain; Inter 36.6 42 0.00091 19.9 2.6 17 85-101 87-103 (104)
33 smart00233 PH Pleckstrin homol 36.3 39 0.00085 19.5 2.4 17 85-101 85-101 (102)
34 PF04110 APG12: Ubiquitin-like 36.0 88 0.0019 20.0 4.0 55 6-63 23-85 (87)
35 PRK07933 thymidylate kinase; V 35.6 37 0.0008 24.7 2.5 32 1-32 1-33 (213)
36 PF07429 Glyco_transf_56: 4-al 35.5 1.2E+02 0.0025 24.6 5.4 16 87-102 343-358 (360)
37 PRK08943 lipid A biosynthesis 35.1 52 0.0011 25.2 3.4 45 14-58 189-249 (314)
38 PRK00194 hypothetical protein; 35.1 48 0.001 20.3 2.7 27 3-31 6-32 (90)
39 cd01238 PH_Tec Tec pleckstrin 33.5 38 0.00083 21.8 2.1 16 85-100 91-106 (106)
40 TIGR02453 conserved hypothetic 33.2 60 0.0013 24.0 3.4 54 52-108 94-151 (217)
41 PRK13762 tRNA-modifying enzyme 33.1 48 0.001 25.9 2.9 31 3-34 135-165 (322)
42 cd01235 PH_SETbf Set binding f 32.8 45 0.00097 20.6 2.3 16 85-100 85-100 (101)
43 cd04918 ACT_AK1-AT_2 ACT domai 32.7 80 0.0017 18.2 3.3 26 7-32 8-33 (65)
44 cd01260 PH_CNK Connector enhan 32.6 42 0.00091 20.8 2.1 16 85-100 81-96 (96)
45 cd04870 ACT_PSP_1 CT domains f 31.9 62 0.0014 19.2 2.8 26 3-30 2-27 (75)
46 PF10579 Rapsyn_N: Rapsyn N-te 31.7 28 0.00061 22.1 1.2 19 87-105 23-41 (80)
47 PF09413 DUF2007: Domain of un 30.5 52 0.0011 19.1 2.2 19 16-34 12-30 (67)
48 cd02042 ParA ParA and ParB of 30.4 45 0.00097 20.7 2.0 54 2-56 4-69 (104)
49 COG1560 HtrB Lauroyl/myristoyl 30.2 1.4E+02 0.003 23.4 5.1 43 15-57 183-241 (308)
50 COG3175 COX11 Cytochrome oxida 30.2 41 0.00089 24.7 2.0 16 52-67 145-160 (195)
51 cd01246 PH_oxysterol_bp Oxyste 30.1 50 0.0011 19.7 2.1 16 85-100 76-91 (91)
52 PF13740 ACT_6: ACT domain; PD 29.8 44 0.00095 20.0 1.8 26 3-30 5-30 (76)
53 cd04869 ACT_GcvR_2 ACT domains 29.7 65 0.0014 19.0 2.6 27 3-31 2-28 (81)
54 cd04872 ACT_1ZPV ACT domain pr 29.3 68 0.0015 19.6 2.7 27 3-31 4-30 (88)
55 cd00861 ProRS_anticodon_short 29.1 71 0.0015 19.3 2.8 30 14-43 18-48 (94)
56 PF13366 PDDEXK_3: PD-(D/E)XK 28.7 52 0.0011 22.2 2.2 9 51-59 45-53 (118)
57 PRK08419 lipid A biosynthesis 28.4 72 0.0016 24.1 3.2 43 16-58 173-231 (298)
58 cd01244 PH_RasGAP_CG9209 RAS_G 27.8 53 0.0011 21.2 2.0 16 85-100 83-98 (98)
59 TIGR02208 lipid_A_msbB lipid A 26.9 95 0.0021 23.7 3.6 45 14-58 180-240 (305)
60 PRK02797 4-alpha-L-fucosyltran 26.9 1.4E+02 0.003 23.8 4.5 16 87-102 304-319 (322)
61 PRK08734 lipid A biosynthesis 26.7 93 0.002 23.8 3.5 48 14-61 171-234 (305)
62 cd04915 ACT_AK-Ectoine_2 ACT d 26.5 1.1E+02 0.0024 17.7 3.2 29 4-32 6-34 (66)
63 PRK08706 lipid A biosynthesis 26.0 97 0.0021 23.4 3.5 45 14-58 164-225 (289)
64 cd04875 ACT_F4HF-DF N-terminal 25.8 92 0.002 18.2 2.8 26 3-30 2-27 (74)
65 cd00900 PH-like Pleckstrin hom 25.8 62 0.0013 18.6 2.0 15 86-100 85-99 (99)
66 PF06504 RepC: Replication pro 25.7 59 0.0013 25.4 2.2 24 88-112 246-269 (281)
67 cd00821 PH Pleckstrin homology 25.6 63 0.0014 18.4 2.0 16 85-100 81-96 (96)
68 PF01842 ACT: ACT domain; Int 25.5 65 0.0014 17.8 2.0 28 3-32 3-30 (66)
69 cd01252 PH_cytohesin Cytohesin 25.3 75 0.0016 20.9 2.5 18 85-102 97-114 (125)
70 PRK06860 lipid A biosynthesis 25.0 97 0.0021 23.7 3.3 43 16-58 184-243 (309)
71 cd04937 ACT_AKi-DapG-BS_2 ACT 24.8 1.1E+02 0.0024 17.4 2.9 29 3-31 4-33 (64)
72 KOG2865 NADH:ubiquinone oxidor 24.4 39 0.00085 27.0 1.1 28 47-76 83-112 (391)
73 TIGR02826 RNR_activ_nrdG3 anae 23.9 74 0.0016 22.0 2.3 31 3-34 65-95 (147)
74 cd04922 ACT_AKi-HSDH-ThrA_2 AC 23.2 1.3E+02 0.0028 16.7 3.0 19 14-32 16-34 (66)
75 KOG0635 Adenosine 5'-phosphosu 23.1 96 0.0021 22.6 2.8 33 3-39 39-73 (207)
76 PF15409 PH_8: Pleckstrin homo 22.9 79 0.0017 20.3 2.1 15 86-100 74-88 (89)
77 cd01250 PH_centaurin Centaurin 22.8 73 0.0016 19.0 1.9 15 85-99 79-93 (94)
78 TIGR02207 lipid_A_htrB lipid A 22.7 1.1E+02 0.0024 23.2 3.2 43 16-58 178-237 (303)
79 PRK08905 lipid A biosynthesis 22.7 1.1E+02 0.0024 23.2 3.2 45 15-59 160-220 (289)
80 PF09838 DUF2065: Uncharacteri 22.1 77 0.0017 18.6 1.8 15 91-105 21-35 (57)
81 TIGR00347 bioD dethiobiotin sy 21.9 75 0.0016 21.5 2.0 29 2-30 1-29 (166)
82 PRK08350 hypothetical protein; 21.7 66 0.0014 25.8 1.8 27 2-29 285-311 (341)
83 TIGR00409 proS_fam_II prolyl-t 21.6 1E+02 0.0022 26.2 3.1 50 14-67 490-540 (568)
84 PRK15183 Vi polysaccharide bio 21.4 1.3E+02 0.0029 20.3 3.0 23 76-98 101-123 (143)
85 cd04914 ACT_AKi-DapG-BS_1 ACT 21.2 1.2E+02 0.0027 17.6 2.7 27 3-30 4-30 (67)
86 PRK08025 lipid A biosynthesis 21.1 1.3E+02 0.0028 22.9 3.4 43 16-58 182-241 (305)
87 PF09383 NIL: NIL domain; Int 21.0 1.1E+02 0.0023 18.2 2.4 20 3-23 7-26 (76)
88 cd01230 PH_EFA6 EFA6 Pleckstri 21.0 91 0.002 20.8 2.2 18 86-103 96-113 (117)
89 PF00128 Alpha-amylase: Alpha 20.9 88 0.0019 22.7 2.3 18 17-34 55-72 (316)
90 PF01656 CbiA: CobQ/CobB/MinD/ 20.9 58 0.0013 22.2 1.3 31 1-32 2-32 (195)
91 PF01320 Colicin_Pyocin: Colic 20.8 75 0.0016 20.3 1.7 15 88-106 69-83 (85)
92 PRK15174 Vi polysaccharide exp 20.7 1.5E+02 0.0032 25.3 3.9 48 14-62 533-596 (656)
93 cd07367 CarBb CarBb is the B s 20.7 2.8E+02 0.0062 20.9 5.1 68 14-81 91-164 (268)
94 cd00860 ThrRS_anticodon ThrRS 20.4 88 0.0019 18.6 1.9 20 15-34 16-35 (91)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=7.7e-37 Score=266.18 Aligned_cols=109 Identities=37% Similarity=0.610 Sum_probs=101.5
Q ss_pred CceecccCCCCCCchHhHHHHHHhhCCCceeeeCCCCCCccchHHH----------------------------------
Q 036503 1 MSLSVSEERTPETTLLAIYIQISLDKNIRTFIDDQLNRGDEISESL---------------------------------- 46 (112)
Q Consensus 1 ~Flsfrg~d~~~~~F~shL~~aL~~~gI~~F~D~~l~~g~~i~~~l---------------------------------- 46 (112)
|||||||+|||+ +|++|||+||.++||+||+|+++++|+.|++.|
T Consensus 15 vf~sfrg~d~r~-~f~~hl~~~l~~~~i~~f~d~~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya~s~wcl~el~~i~~~ 93 (1153)
T PLN03210 15 VFPSFSGEDVRI-TFLSHFLKELDRKLIIAFKDNEIERSQSLDPELKQAIRDSRIAVVVFSKNYASSSWCLNELLEIVRC 93 (1153)
T ss_pred EEeeCCCccccc-CHHHHHHHHHHHCCCeEEccCCccCCCcccHHHHHHHHhCeEEEEEecCCcccchHHHHHHHHHHHh
Confidence 799999999999 999999999999999999999999999998765
Q ss_pred -HhcCceeEeEEeecCCcccccccCchHHHHHHHHHhhccChHHHHHHHHHHHHhhcccCcccCCCC
Q 036503 47 -KEYGQVVIPVFYRVDPSDVRNQTGSFGDSFSKLEERSKENSEKLQTWRNALKEAASLSGFPSQNIG 112 (112)
Q Consensus 47 -~~~~~~ViPVFY~V~psdVr~q~g~fg~af~~~~~~~~~~~e~v~~W~~AL~~v~~~~G~~~~~~~ 112 (112)
++.+++||||||+|+|||||+|+|.||+||.++++.. +++++++||+||++||+++||++.+|+
T Consensus 94 ~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~--~~~~~~~w~~al~~~~~~~g~~~~~~~ 158 (1153)
T PLN03210 94 KEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNK--TEDEKIQWKQALTDVANILGYHSQNWP 158 (1153)
T ss_pred hhhcCceEEEEEecccHHHHhhccchHHHHHHHHhccc--chhHHHHHHHHHHHHhCcCceecCCCC
Confidence 4678999999999999999999999999999998764 368999999999999999999998764
No 2
>PLN03194 putative disease resistance protein; Provisional
Probab=100.00 E-value=4.4e-34 Score=206.33 Aligned_cols=95 Identities=25% Similarity=0.415 Sum_probs=85.2
Q ss_pred CceecccCCCCCCchHhHHHHHHhhCCCceeeeC-CCCCCccchHHH-------------------------------Hh
Q 036503 1 MSLSVSEERTPETTLLAIYIQISLDKNIRTFIDD-QLNRGDEISESL-------------------------------KE 48 (112)
Q Consensus 1 ~Flsfrg~d~~~~~F~shL~~aL~~~gI~~F~D~-~l~~g~~i~~~l-------------------------------~~ 48 (112)
|||||||+|+|. +|++||+.+|.++||+||+|+ ++++|+.|.+.| .+
T Consensus 29 VFISFrG~DtR~-~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WCLdEL~~I~e 107 (187)
T PLN03194 29 VFINHRGIDTKR-TIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFCLHELALIME 107 (187)
T ss_pred EEEeCCCccccc-cHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchhHHHHHHHHHH
Confidence 699999999999 999999999999999999999 899999998766 34
Q ss_pred cCceeEeEEeecCCcccccc-cCchHHHHHHHHHhhccChHHHHHHHHHHHHhhcccCcccC
Q 036503 49 YGQVVIPVFYRVDPSDVRNQ-TGSFGDSFSKLEERSKENSEKLQTWRNALKEAASLSGFPSQ 109 (112)
Q Consensus 49 ~~~~ViPVFY~V~psdVr~q-~g~fg~af~~~~~~~~~~~e~v~~W~~AL~~v~~~~G~~~~ 109 (112)
.+.+||||||+|+|+|||+| .|. .+.+++++||.||++|++++||+++
T Consensus 108 ~~~~ViPIFY~VdPsdVr~q~~~~-------------~~~e~v~~Wr~AL~~va~l~G~~~~ 156 (187)
T PLN03194 108 SKKRVIPIFCDVKPSQLRVVDNGT-------------CPDEEIRRFNWALEEAKYTVGLTFD 156 (187)
T ss_pred cCCEEEEEEecCCHHHhhccccCC-------------CCHHHHHHHHHHHHHHhccccccCC
Confidence 56789999999999999997 443 1358999999999999999999875
No 3
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=99.52 E-value=1e-15 Score=105.40 Aligned_cols=97 Identities=22% Similarity=0.388 Sum_probs=78.4
Q ss_pred CceecccCCCCCCchHhHHHHHHhhC--CCceeeeC-CCCCCccchHHH-------------------------------
Q 036503 1 MSLSVSEERTPETTLLAIYIQISLDK--NIRTFIDD-QLNRGDEISESL------------------------------- 46 (112)
Q Consensus 1 ~Flsfrg~d~~~~~F~shL~~aL~~~--gI~~F~D~-~l~~g~~i~~~l------------------------------- 46 (112)
+||||++.+++. .|+++|..+|.++ |+++|+++ ++..|..+...+
T Consensus 1 vfisy~~~~d~~-~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a 79 (141)
T PF01582_consen 1 VFISYSGKDDRE-WFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEA 79 (141)
T ss_dssp EEEEE-GHHGHH-HHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHH
T ss_pred cEEEeCCCCcHH-HHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhh
Confidence 599999966666 9999999999999 99999998 788998766544
Q ss_pred ----Hhc--CceeEeEEeecCCcccc-cccCchHHHHHHHHHhhccC--hHHHHHHHHHHH
Q 036503 47 ----KEY--GQVVIPVFYRVDPSDVR-NQTGSFGDSFSKLEERSKEN--SEKLQTWRNALK 98 (112)
Q Consensus 47 ----~~~--~~~ViPVFY~V~psdVr-~q~g~fg~af~~~~~~~~~~--~e~v~~W~~AL~ 98 (112)
.+. ..+|+||||+|.|++|+ .|++.|+.+|..+......+ .++...|++++.
T Consensus 80 ~~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~ 140 (141)
T PF01582_consen 80 LERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLRY 140 (141)
T ss_dssp HHHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHHH
T ss_pred hhhccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHHHhc
Confidence 233 48999999999999999 79999999998887765533 468899999975
No 4
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=99.33 E-value=3.7e-12 Score=86.35 Aligned_cols=100 Identities=35% Similarity=0.508 Sum_probs=77.9
Q ss_pred Cceeccc-CCCCCCchHhHHHHHHhhCCCceeeeCCCCCC-c--cchHHH------------------------------
Q 036503 1 MSLSVSE-ERTPETTLLAIYIQISLDKNIRTFIDDQLNRG-D--EISESL------------------------------ 46 (112)
Q Consensus 1 ~Flsfrg-~d~~~~~F~shL~~aL~~~gI~~F~D~~l~~g-~--~i~~~l------------------------------ 46 (112)
+||||++ +++.+ .|+.+|..+|...|+.+|.|+....+ . +|...+
T Consensus 4 vFISys~~~~~~~-~~v~~L~~~l~~~~~~v~~d~~~~~~~~~~~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~a~~~ 82 (140)
T smart00255 4 VFISYSGKEDVRN-EFLSHLLEKLRGYGLCVFIDDFEPGGGDLEEIDEAIEKSRIAIVVLSPNYAESEWCLDELVAALEN 82 (140)
T ss_pred EEEECCCCHHHHH-HHHHHHHHHhhcCCcEEEecCcccccchHHHHHHHHHHCcEEEEEECcccccChhHHHHHHHHHHH
Confidence 6999999 56667 99999999999999999999844333 2 233333
Q ss_pred --HhcCceeEeEEeecCCcccccccCchHHHHHHHHHhhccChHHHHHHHHHHHHhhc
Q 036503 47 --KEYGQVVIPVFYRVDPSDVRNQTGSFGDSFSKLEERSKENSEKLQTWRNALKEAAS 102 (112)
Q Consensus 47 --~~~~~~ViPVFY~V~psdVr~q~g~fg~af~~~~~~~~~~~e~v~~W~~AL~~v~~ 102 (112)
+.....||||+|+..|+++..+.+.++.++..+.....++..+ +.|+.++..+++
T Consensus 83 ~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~~-~fW~~~~~~l~~ 139 (140)
T smart00255 83 ALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDEKE-RFWKKALYAVPS 139 (140)
T ss_pred HHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCchhH-HHHHHHHHHhcc
Confidence 1145799999999999999999999999998875555543333 789999988764
No 5
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=98.16 E-value=7.1e-07 Score=57.62 Aligned_cols=40 Identities=20% Similarity=0.297 Sum_probs=30.4
Q ss_pred CceecccCCCCCCchHhHHHHHHhhCCCceeeeCCCCCCccch
Q 036503 1 MSLSVSEERTPETTLLAIYIQISLDKNIRTFIDDQLNRGDEIS 43 (112)
Q Consensus 1 ~Flsfrg~d~~~~~F~shL~~aL~~~gI~~F~D~~l~~g~~i~ 43 (112)
+||||+.+|. .++..|...|...|+++|.|.++..|+.+.
T Consensus 1 VFIS~~~~D~---~~a~~l~~~L~~~g~~v~~d~~~~~g~~~~ 40 (102)
T PF13676_consen 1 VFISYSSEDR---EFAERLAERLESAGIRVFLDRDIPPGEDWR 40 (102)
T ss_dssp EEEEEEGGGC---CCHHHHHHHHHHTT--EE-GGEE-TTS-HH
T ss_pred eEEEecCCcH---HHHHHHHHHHhhcCCEEEEEEeCCCCCCHH
Confidence 6999999993 789999999999999999998777777543
No 6
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=92.72 E-value=0.15 Score=42.67 Aligned_cols=39 Identities=23% Similarity=0.250 Sum_probs=30.3
Q ss_pred CceecccCCCCCCchHhHHHHHHhhCCCceeeeC-CCCCCcc
Q 036503 1 MSLSVSEERTPETTLLAIYIQISLDKNIRTFIDD-QLNRGDE 41 (112)
Q Consensus 1 ~Flsfrg~d~~~~~F~shL~~aL~~~gI~~F~D~-~l~~g~~ 41 (112)
||||+|.. +-+ -..|.|.-.|.-.|.+||+|- .+..|+-
T Consensus 615 VFISYRRs-tGn-QLASLiKV~LQL~GyrVFIDVdKL~AGKF 654 (832)
T KOG3678|consen 615 VFISYRRS-TGN-QLASLIKVLLQLRGYRVFIDVDKLYAGKF 654 (832)
T ss_pred eEEEeecc-ccH-HHHHHHHHHHHhcCceEEEehhhhhcccc
Confidence 69999874 344 577777777788999999996 7877764
No 7
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=71.59 E-value=3.8 Score=27.74 Aligned_cols=36 Identities=14% Similarity=0.235 Sum_probs=28.1
Q ss_pred CceecccCCCCCCchHhHHHHHHhhC-CCceeeeC-CC
Q 036503 1 MSLSVSEERTPETTLLAIYIQISLDK-NIRTFIDD-QL 36 (112)
Q Consensus 1 ~Flsfrg~d~~~~~F~shL~~aL~~~-gI~~F~D~-~l 36 (112)
||||++-+......-|-.|...|++. ||.|.+|. +.
T Consensus 3 VfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~ 40 (150)
T PF08357_consen 3 VFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWEL 40 (150)
T ss_pred EEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhh
Confidence 68999874333336688899999999 99999998 54
No 8
>PRK13883 conjugal transfer protein TrbH; Provisional
Probab=67.86 E-value=8.5 Score=27.25 Aligned_cols=55 Identities=13% Similarity=0.163 Sum_probs=33.3
Q ss_pred CCCCCCchHhHHHHHHhhCCCceeeeCCCCCCccchHHHHhcCceeEeEEeecCCc
Q 036503 8 ERTPETTLLAIYIQISLDKNIRTFIDDQLNRGDEISESLKEYGQVVIPVFYRVDPS 63 (112)
Q Consensus 8 ~d~~~~~F~shL~~aL~~~gI~~F~D~~l~~g~~i~~~l~~~~~~ViPVFY~V~ps 63 (112)
.|+.. .|-..|.++|+++|.-|--++....-..-..........-+|.+|-||+-
T Consensus 59 q~~~D-~Fg~aL~~aLR~~GYaV~e~~~~~~~~~~~~~~~~~~~~~~~L~Yvvd~~ 113 (151)
T PRK13883 59 QPTPD-AFGQALVKALRDKGYALLEYNPAGASAAAPAAAASAASGGLPLRYVLDQA 113 (151)
T ss_pred cCCCc-HHHHHHHHHHHHcCeEEEecCCccccccccccccccccCCcceEEEEecC
Confidence 35665 89999999999999988765522100000000011223567888888874
No 9
>PF07283 TrbH: Conjugal transfer protein TrbH; InterPro: IPR010837 This entry represents TrbH, a bacterial conjugal transfer protein approximately 150 residues long. TrbH contains a putative membrane lipoprotein lipid attachment site [].
Probab=54.86 E-value=21 Score=24.27 Aligned_cols=49 Identities=18% Similarity=0.140 Sum_probs=31.0
Q ss_pred chHhHHHHHHhhCCCceeeeCCCCCCccchHHHHhcCceeEeEEeecCCcc
Q 036503 14 TLLAIYIQISLDKNIRTFIDDQLNRGDEISESLKEYGQVVIPVFYRVDPSD 64 (112)
Q Consensus 14 ~F~shL~~aL~~~gI~~F~D~~l~~g~~i~~~l~~~~~~ViPVFY~V~psd 64 (112)
.|-..|.++|+.+|.-|--++........... ...-.-+|..|-|++.+
T Consensus 36 ~Fg~aL~~~LR~~GYaV~e~~~~~~~~~~~~~--~~~~~g~~L~Yvvd~~~ 84 (121)
T PF07283_consen 36 PFGQALENALRAKGYAVIEDDPPDNSANASAA--AEAPKGVPLRYVVDQFD 84 (121)
T ss_pred hHHHHHHHHHHhcCcEEEecCCcccccccccc--cccCCCeeEEEEEEcCC
Confidence 89999999999999988766532222221100 01123468888888766
No 10
>cd02426 Pol_gamma_b_Cterm C-terminal domain of mitochondrial DNA polymerase gamma B subunit, which is required for processivity. Polymerase gamma replicates and repairs mitochondrial DNA. The c-terminal domain of its B subunit is strikingly similar to the anticodon-binding domain of glycyl tRNA synthetase.
Probab=50.82 E-value=36 Score=22.95 Aligned_cols=50 Identities=6% Similarity=0.021 Sum_probs=35.0
Q ss_pred chHhHHHHHHhhCCCceeeeCCC----CCCccchHHHHhcCceeEeEEeecCCccccc
Q 036503 14 TLLAIYIQISLDKNIRTFIDDQL----NRGDEISESLKEYGQVVIPVFYRVDPSDVRN 67 (112)
Q Consensus 14 ~F~shL~~aL~~~gI~~F~D~~l----~~g~~i~~~l~~~~~~ViPVFY~V~psdVr~ 67 (112)
.....||+.|+..||.|..|+.. ..|..+ ....++=+|+---|.|.++.+
T Consensus 44 ~~a~~l~~~L~~~gi~v~~D~r~~~~~~~G~k~----~~~dliGiP~~I~IG~~~l~~ 97 (128)
T cd02426 44 DLCQGLKNELREAGLSVWPGYLETQHSSLEQLL----DKYDEMGVLFTLLISEQTLEN 97 (128)
T ss_pred HHHHHHHHHHHHcCCEEEeccCcccccCHHHHH----HhhhhcCCCEEEEECCCcccC
Confidence 56778999999999999998833 334433 233344578877788887643
No 11
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=48.31 E-value=18 Score=23.26 Aligned_cols=17 Identities=29% Similarity=0.612 Sum_probs=14.0
Q ss_pred cChHHHHHHHHHHHHhh
Q 036503 85 ENSEKLQTWRNALKEAA 101 (112)
Q Consensus 85 ~~~e~v~~W~~AL~~v~ 101 (112)
++++..+.|..||..|+
T Consensus 86 ~s~ee~~eWi~ai~~v~ 102 (102)
T cd01241 86 ESPEEREEWIHAIQTVA 102 (102)
T ss_pred CCHHHHHHHHHHHHhhC
Confidence 35788999999998874
No 12
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=47.17 E-value=8.8 Score=25.19 Aligned_cols=27 Identities=41% Similarity=0.812 Sum_probs=19.7
Q ss_pred eeeeCCCCCCccchHHH--------HhcCceeEeEE
Q 036503 30 TFIDDQLNRGDEISESL--------KEYGQVVIPVF 57 (112)
Q Consensus 30 ~F~D~~l~~g~~i~~~l--------~~~~~~ViPVF 57 (112)
|++++++ +|+.|...| ++.+..|+|+.
T Consensus 45 T~V~d~l-rGqGia~~L~~~al~~ar~~g~kiiP~C 79 (99)
T COG2388 45 TYVPDEL-RGQGIAQKLVEKALEEAREAGLKIIPLC 79 (99)
T ss_pred CcCCHHH-cCCcHHHHHHHHHHHHHHHcCCeEcccc
Confidence 4555544 677777666 78899999986
No 13
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=47.15 E-value=17 Score=22.33 Aligned_cols=31 Identities=19% Similarity=0.158 Sum_probs=23.4
Q ss_pred chHhHHHHHHhhCCCceeeeC-CCCCCccchH
Q 036503 14 TLLAIYIQISLDKNIRTFIDD-QLNRGDEISE 44 (112)
Q Consensus 14 ~F~shL~~aL~~~gI~~F~D~-~l~~g~~i~~ 44 (112)
....+|.+.|++.||.+-+|+ ...-|+.+..
T Consensus 16 ~~a~~l~~~L~~~gi~v~~d~~~~~~~k~~~~ 47 (94)
T PF03129_consen 16 EYAQELANKLRKAGIRVELDDSDKSLGKQIKY 47 (94)
T ss_dssp HHHHHHHHHHHHTTSEEEEESSSSTHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCchhHHHHH
Confidence 567889999999999999997 4444555443
No 14
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=47.12 E-value=29 Score=29.53 Aligned_cols=91 Identities=16% Similarity=0.290 Sum_probs=55.0
Q ss_pred chHhHHHHHHhhCCCceeeeCCCCCCccchHHHH--------hcCceeEeE-EeecCCccccc---ccCch-----HHHH
Q 036503 14 TLLAIYIQISLDKNIRTFIDDQLNRGDEISESLK--------EYGQVVIPV-FYRVDPSDVRN---QTGSF-----GDSF 76 (112)
Q Consensus 14 ~F~shL~~aL~~~gI~~F~D~~l~~g~~i~~~l~--------~~~~~ViPV-FY~V~psdVr~---q~g~f-----g~af 76 (112)
|.+.|=.+.+.+..|.+|+... ++|.+.+..|. ..|+..+-. ---.++|+..- ..+.| ++-|
T Consensus 238 TV~qh~laK~sdadiVVyigCG-ERGNEmtevL~eFPeL~Dp~tg~~lm~RT~liaNTSnMPVAAREasIYtGiTiaEY~ 316 (588)
T COG1155 238 TVSQHTLSKLADGDIVIYVGCG-ERGNEMTEVLQEFPELKDPNTGQPLMDRTVLIANTSNMPVAAREASIYTGITIAEYY 316 (588)
T ss_pred EehhhhhhhhccCCEEEEEecC-CccchHHHHHHhCccccCCCCCCcccceeeEeecCccchHHHhhhhhhhhhhHHHHH
Confidence 6677877889999999999984 47888887771 112211100 00135555432 22333 4555
Q ss_pred HHHHHhhccChHHHHHHHHHHHHhhcccC
Q 036503 77 SKLEERSKENSEKLQTWRNALKEAASLSG 105 (112)
Q Consensus 77 ~~~~~~~~~~~e~v~~W~~AL~~v~~~~G 105 (112)
.+..-...-..+--.+|.+||.+++...+
T Consensus 317 RDmGy~v~lmADSTSRWAEAlREisgRle 345 (588)
T COG1155 317 RDMGYDVALMADSTSRWAEALREISGRLE 345 (588)
T ss_pred HhhhhhhHHhhchHHHHHHHHHHHhcccc
Confidence 54443333234667899999999998765
No 15
>PRK06946 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=44.29 E-value=38 Score=25.73 Aligned_cols=49 Identities=16% Similarity=0.153 Sum_probs=32.3
Q ss_pred chHhHHHHHHhhCCCceeeeC-CCC--CCccc-----------hH-HH-HhcCceeEeEEeecCC
Q 036503 14 TLLAIYIQISLDKNIRTFIDD-QLN--RGDEI-----------SE-SL-KEYGQVVIPVFYRVDP 62 (112)
Q Consensus 14 ~F~shL~~aL~~~gI~~F~D~-~l~--~g~~i-----------~~-~l-~~~~~~ViPVFY~V~p 62 (112)
.-+..+.++|++.++-.+.-| ... .|-.+ .+ .| ...+..|+|+|....|
T Consensus 168 ~~~r~~~~~Lk~g~~v~~l~Dq~~~~~~gv~v~FFG~~a~t~~~~a~LA~~~~a~vvp~~~~r~~ 232 (293)
T PRK06946 168 DSARQVLRWLRDGKPVMLGADMDFGLRDSTFVPFFGVPACTLTAVSRLARTGGAQVVPFITEVLP 232 (293)
T ss_pred chHHHHHHHHhCCCeEEEeCCCCCCCCCCeEeCCCCCCcHHhHHHHHHHHhcCCeEEEEEEEEeC
Confidence 346678899999999888866 432 23211 01 11 6788999999976544
No 16
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=43.96 E-value=29 Score=21.00 Aligned_cols=27 Identities=11% Similarity=0.159 Sum_probs=23.5
Q ss_pred eecccCCCCCCchHhHHHHHHhhCCCcee
Q 036503 3 LSVSEERTPETTLLAIYIQISLDKNIRTF 31 (112)
Q Consensus 3 lsfrg~d~~~~~F~shL~~aL~~~gI~~F 31 (112)
|++.|.|.+ ..++.+.+.|.+.|++.-
T Consensus 4 ltv~g~Dr~--GiVa~vs~~la~~g~nI~ 30 (77)
T cd04893 4 ISALGTDRP--GILNELTRAVSESGCNIL 30 (77)
T ss_pred EEEEeCCCC--hHHHHHHHHHHHcCCCEE
Confidence 678898876 899999999999999873
No 17
>PHA00407 phage lambda Rz1-like protein
Probab=43.58 E-value=16 Score=23.10 Aligned_cols=23 Identities=35% Similarity=0.632 Sum_probs=17.2
Q ss_pred hHHHHHHHHHH-----HHhhcccCcccC
Q 036503 87 SEKLQTWRNAL-----KEAASLSGFPSQ 109 (112)
Q Consensus 87 ~e~v~~W~~AL-----~~v~~~~G~~~~ 109 (112)
..+.++||.|| .-|+-++|..+.
T Consensus 25 kktl~rwkaaLIGlllicv~tISGCaSe 52 (84)
T PHA00407 25 KKTLRRWKAALIGLLLICVATISGCASE 52 (84)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 46788999997 467778887654
No 18
>PF02337 Gag_p10: Retroviral GAG p10 protein; InterPro: IPR003322 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from beta-retroviruses such as Mason-Pfizer monkey virus (MPMV) (Simian Mason-Pfizer virus) and Mouse mammary tumor virus (MMTV) [, ]. This entry also identifies matrix proteins from several eukaryotic endogenous retroviruses, which arise when one or more copies of the retroviral genome becomes integrated into the host genome [].; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 2F77_X 2F76_X.
Probab=43.00 E-value=18 Score=23.40 Aligned_cols=17 Identities=18% Similarity=0.417 Sum_probs=13.5
Q ss_pred chHhHHHHHHhhCCCce
Q 036503 14 TLLAIYIQISLDKNIRT 30 (112)
Q Consensus 14 ~F~shL~~aL~~~gI~~ 30 (112)
.|++.|...|+.+||++
T Consensus 9 ~fv~~Lk~lLk~rGi~v 25 (90)
T PF02337_consen 9 PFVSILKHLLKERGIRV 25 (90)
T ss_dssp HHHHHHHHHHHCCT---
T ss_pred HHHHHHHHHHHHcCeee
Confidence 79999999999999987
No 19
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=42.85 E-value=4 Score=37.23 Aligned_cols=28 Identities=39% Similarity=0.567 Sum_probs=19.1
Q ss_pred ceeEeEEeecCCcccccccCchHHHHHHH
Q 036503 51 QVVIPVFYRVDPSDVRNQTGSFGDSFSKL 79 (112)
Q Consensus 51 ~~ViPVFY~V~psdVr~q~g~fg~af~~~ 79 (112)
+..||+||+-+|+.|-..+ .=-+.|.+.
T Consensus 34 LRlip~FYGa~p~rlv~k~-~~rksF~~y 61 (1201)
T PF12128_consen 34 LRLIPFFYGADPSRLVPKT-SGRKSFDDY 61 (1201)
T ss_pred HHHHHHhcCCCccccCCcc-chhhhHHHH
Confidence 6789999999999974433 113455544
No 20
>TIGR00295 conserved hypothetical protein TIGR00295. This set of orthologs is narrowly defined, comprising proteins found in three Archaea but not in Pyrococcus horikoshii. The closest homologs are other archaeal proteins that appear to be represent distinct orthologous clusters.
Probab=41.43 E-value=52 Score=22.98 Aligned_cols=32 Identities=28% Similarity=0.361 Sum_probs=26.0
Q ss_pred hHHHHHHHHHhhccChHHHHHHHHHHHHhhcc
Q 036503 72 FGDSFSKLEERSKENSEKLQTWRNALKEAASL 103 (112)
Q Consensus 72 fg~af~~~~~~~~~~~e~v~~W~~AL~~v~~~ 103 (112)
-.+.+.+...++..++....+|+.+..+|.++
T Consensus 132 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (164)
T TIGR00295 132 IDEVIKKLEERLGKNHPSIERARKLKEELERL 163 (164)
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHhh
Confidence 35667777778888888899999999999875
No 21
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=40.77 E-value=33 Score=22.03 Aligned_cols=19 Identities=21% Similarity=0.403 Sum_probs=15.8
Q ss_pred cChHHHHHHHHHHHHhhcc
Q 036503 85 ENSEKLQTWRNALKEAASL 103 (112)
Q Consensus 85 ~~~e~v~~W~~AL~~v~~~ 103 (112)
++++....|.+||..|.+.
T Consensus 84 ~s~~e~~~Wi~ai~~v~~~ 102 (103)
T cd01251 84 ETEQDRREWIAAFQNVLSR 102 (103)
T ss_pred CCHHHHHHHHHHHHHHhcC
Confidence 4678889999999998764
No 22
>PRK08733 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=40.29 E-value=38 Score=25.90 Aligned_cols=44 Identities=20% Similarity=0.199 Sum_probs=30.0
Q ss_pred hHhHHHHHHhhCCCceeeeC-CCCCCccch-HH-------------H-HhcCceeEeEEe
Q 036503 15 LLAIYIQISLDKNIRTFIDD-QLNRGDEIS-ES-------------L-KEYGQVVIPVFY 58 (112)
Q Consensus 15 F~shL~~aL~~~gI~~F~D~-~l~~g~~i~-~~-------------l-~~~~~~ViPVFY 58 (112)
-+..+.++|++.|+-.+.-| ....++.+. +. | ...+..|+|+|-
T Consensus 183 ~~r~~~kaLk~g~~v~il~Dq~~~~~~gv~v~FfG~~a~t~~g~a~LA~~~~apvvp~~~ 242 (306)
T PRK08733 183 DLRATIKHLKRGGFLWYAPDQDMRGKDTVFVPFFGHPASTITATHQLARLTGCAVVPYFH 242 (306)
T ss_pred cHHHHHHHHhCCCeEEEeCCCCCCCCCcEEeCCCCCchhHHHHHHHHHHHhCCeEEEEEE
Confidence 37788999999999888866 442222221 11 1 677889999984
No 23
>PRK13835 conjugal transfer protein TrbH; Provisional
Probab=40.20 E-value=53 Score=23.12 Aligned_cols=42 Identities=14% Similarity=0.110 Sum_probs=29.0
Q ss_pred CCCCCchHhHHHHHHhhCCCceeeeCCCCCCccchHHHHhcCceeEeEEeecCCc
Q 036503 9 RTPETTLLAIYIQISLDKNIRTFIDDQLNRGDEISESLKEYGQVVIPVFYRVDPS 63 (112)
Q Consensus 9 d~~~~~F~shL~~aL~~~gI~~F~D~~l~~g~~i~~~l~~~~~~ViPVFY~V~ps 63 (112)
|+ . .|-..|.++|+.+|..|--|....++ ..-+|..|-||+-
T Consensus 66 ~~-d-~Fg~aL~~aLr~~GYaVvtd~k~~~~-----------~~~v~L~Yvid~~ 107 (145)
T PRK13835 66 DT-S-PFGQALEAALKGWGYAVVTDQKTDKG-----------PKPVELAYVVDSF 107 (145)
T ss_pred cC-c-HHHHHHHHHHHhcCeEEeeccccccc-----------cCccceEEEEecC
Confidence 44 4 89999999999999988755433222 2345777777763
No 24
>PRK05646 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=38.53 E-value=41 Score=25.74 Aligned_cols=44 Identities=11% Similarity=0.010 Sum_probs=29.4
Q ss_pred hHhHHHHHHhhCCCceeeeC-CCCCCccch-HH-------------H-HhcCceeEeEEe
Q 036503 15 LLAIYIQISLDKNIRTFIDD-QLNRGDEIS-ES-------------L-KEYGQVVIPVFY 58 (112)
Q Consensus 15 F~shL~~aL~~~gI~~F~D~-~l~~g~~i~-~~-------------l-~~~~~~ViPVFY 58 (112)
-+..+.++|++.++-.+.-| ...+++.+. +. | ...+..|+|+|-
T Consensus 182 ~~r~ilk~Lk~g~~v~il~Dq~~~~~~gv~v~FfG~~a~t~~g~a~LA~~~~apvvp~~~ 241 (310)
T PRK05646 182 DVRGMLKLLRAGRAIWYAPDQDYGAKQSIFVPLFGIPAATVTATTKFARLGRARVIPFTQ 241 (310)
T ss_pred hHHHHHHHHhCCCeEEEeCCCCCCCCCCEEecCCCCcchhhhHHHHHHHhhCCcEEEEEE
Confidence 46778899999998888866 443232221 11 1 677889999984
No 25
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=38.20 E-value=32 Score=22.16 Aligned_cols=17 Identities=24% Similarity=0.560 Sum_probs=14.5
Q ss_pred cChHHHHHHHHHHHHhh
Q 036503 85 ENSEKLQTWRNALKEAA 101 (112)
Q Consensus 85 ~~~e~v~~W~~AL~~v~ 101 (112)
++++.++.|..|+.+|+
T Consensus 92 ~s~ee~~~Wi~~I~~~~ 108 (108)
T cd01266 92 KNEEEMTLWVNCICKLC 108 (108)
T ss_pred CCHHHHHHHHHHHHhhC
Confidence 46789999999998874
No 26
>COG3286 Uncharacterized protein conserved in archaea [Function unknown]
Probab=37.59 E-value=19 Score=26.65 Aligned_cols=81 Identities=19% Similarity=0.293 Sum_probs=47.6
Q ss_pred hHHHHHHhhCCCceee-eCCCCCCccchHHH-------------------HhcCceeE--eEEeecCCcccccc---cCc
Q 036503 17 AIYIQISLDKNIRTFI-DDQLNRGDEISESL-------------------KEYGQVVI--PVFYRVDPSDVRNQ---TGS 71 (112)
Q Consensus 17 shL~~aL~~~gI~~F~-D~~l~~g~~i~~~l-------------------~~~~~~Vi--PVFY~V~psdVr~q---~g~ 71 (112)
..|.+||+..|-+|=. ++.+.-.-+++... ++...+|+ .+-|+++|.|+-.. .|-
T Consensus 92 ~vl~daLk~~GyrVevr~~~l~T~ap~~ev~E~vreLse~~~E~~~~~lt~~vrklVv~~S~~~~~~~dd~~eeave~Gl 171 (204)
T COG3286 92 DVLIDALKLLGYRVEVRGGELKTNAPWSEVVELVRELSEVYREARFQPLTRQVRKLVVAVSIVYGLDPDDAAEEAVELGL 171 (204)
T ss_pred HHHHHHHHhCCceEEeeCceeecCCCHHHHHHHHHHHHHHHHHHHhccccchhhhhhhhhhhHhCCCHHHHHHHHHHhhh
Confidence 4688999999998733 33554444444332 12223444 45689999998653 232
Q ss_pred hHHHHHHHHHhhccChHHHHHHHHHHHHhhccc
Q 036503 72 FGDSFSKLEERSKENSEKLQTWRNALKEAASLS 104 (112)
Q Consensus 72 fg~af~~~~~~~~~~~e~v~~W~~AL~~v~~~~ 104 (112)
+.+. +... -+.+..|+.+|...++.-
T Consensus 172 l~e~----E~~~---~~~~~~~e~~L~~l~~~l 197 (204)
T COG3286 172 LEEG----EDGL---RELIKNKERALETLLKAL 197 (204)
T ss_pred hhcc----chhH---HHhhhhHHHHHHHHHHHh
Confidence 2110 1101 255789999999888765
No 27
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=37.45 E-value=35 Score=21.77 Aligned_cols=18 Identities=11% Similarity=0.298 Sum_probs=14.9
Q ss_pred cChHHHHHHHHHHHHhhc
Q 036503 85 ENSEKLQTWRNALKEAAS 102 (112)
Q Consensus 85 ~~~e~v~~W~~AL~~v~~ 102 (112)
.+++...+|.+||..+.+
T Consensus 83 ~s~eEk~~W~~ai~~~i~ 100 (101)
T cd01219 83 RTQKEKNDWVQAIFSIID 100 (101)
T ss_pred CCHHHHHHHHHHHHHHhh
Confidence 457888999999998864
No 28
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=37.35 E-value=23 Score=26.09 Aligned_cols=21 Identities=14% Similarity=0.186 Sum_probs=18.9
Q ss_pred chHhHHHHHHhhCCCceeeeC
Q 036503 14 TLLAIYIQISLDKNIRTFIDD 34 (112)
Q Consensus 14 ~F~shL~~aL~~~gI~~F~D~ 34 (112)
|...-|.++|..+|+++|+-|
T Consensus 38 TiA~ale~~L~~~G~~~y~LD 58 (197)
T COG0529 38 TIANALEEKLFAKGYHVYLLD 58 (197)
T ss_pred HHHHHHHHHHHHcCCeEEEec
Confidence 788899999999999999854
No 29
>PF03279 Lip_A_acyltrans: Bacterial lipid A biosynthesis acyltransferase; InterPro: IPR004960 Bacterial lipopolysachharides (LPS) are glycolipids that make up the outer monolayer of the outer membranes of most Gram-negative bacteria. Though LPS moleculesare variable, they all show the same general features: an outer polysaccharide which is attached to the lipid component, termed lipid A []. The polysaccharide component consists of a variable repeat-structure polysaccharide known as the O-antigen, and a highly conserved short core oligosaccharide which connects the O-antigen to lipid A. Lipid A is a glucosamine-based phospholipid that makes up the membrane anchor region of LPS []. The structure of lipid A is relatively invariant between species, presumably reflecting its fundamental role in membrane integrity. Recognition of lipid A by the innate immune system can lead to a response even at picomolar levels. In some genera, such as Neisseria and Haemophilus, lipooligosaccharides (LOS) are the predominant glycolipids []. These are analogous to LPS except that they lack O-antigens, with the LOS oligosaccharide structures limited to 10 saccharide units. The bacterial lipid A biosynthesis protein, or lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 2.3.1 from EC, transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA during lipopolysaccharide core biosynthesis.; GO: 0016746 transferase activity, transferring acyl groups, 0009244 lipopolysaccharide core region biosynthetic process, 0016021 integral to membrane
Probab=37.29 E-value=37 Score=25.50 Aligned_cols=43 Identities=21% Similarity=0.336 Sum_probs=28.7
Q ss_pred HhHHHHHHhhCCCceeeeC-CCCCCccchH-------------HH--HhcCceeEeEEe
Q 036503 16 LAIYIQISLDKNIRTFIDD-QLNRGDEISE-------------SL--KEYGQVVIPVFY 58 (112)
Q Consensus 16 ~shL~~aL~~~gI~~F~D~-~l~~g~~i~~-------------~l--~~~~~~ViPVFY 58 (112)
+..+.++|++.++-++.-| ....++.+.. .. ...+..|+|||=
T Consensus 181 ~~~~~~~Lk~g~~v~~l~Dq~~~~~~~~~v~FfG~~a~~~~g~a~lA~~~~apvvp~~~ 239 (295)
T PF03279_consen 181 IRELIRALKEGGIVGLLGDQDPGKKDGVFVPFFGRPASTPTGPARLARKTGAPVVPVFA 239 (295)
T ss_pred HHHHHHHhccCCEEEEEECCCCCCCCceEEeECCeecccccHHHHHHHHhCCcEEEEEE
Confidence 6678899999998887766 4333222211 11 677889999994
No 30
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=37.24 E-value=31 Score=20.27 Aligned_cols=20 Identities=15% Similarity=0.140 Sum_probs=16.9
Q ss_pred chHhHHHHHHhhCCCceeee
Q 036503 14 TLLAIYIQISLDKNIRTFID 33 (112)
Q Consensus 14 ~F~shL~~aL~~~gI~~F~D 33 (112)
..++.+.++|.++||++|.=
T Consensus 22 Gv~a~i~~~La~~~I~i~~i 41 (65)
T PF13840_consen 22 GVAAKIFSALAEAGINIFMI 41 (65)
T ss_dssp HHHHHHHHHHHHTTS-ECEE
T ss_pred cHHHHHHHHHHHCCCCEEEE
Confidence 78999999999999998763
No 31
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=36.83 E-value=41 Score=20.60 Aligned_cols=27 Identities=37% Similarity=0.609 Sum_probs=18.3
Q ss_pred eeeeCCCCCCccchHHH--------HhcCceeEeEE
Q 036503 30 TFIDDQLNRGDEISESL--------KEYGQVVIPVF 57 (112)
Q Consensus 30 ~F~D~~l~~g~~i~~~l--------~~~~~~ViPVF 57 (112)
|+++.++ +|+.|...| ++.|..|+|+.
T Consensus 28 T~V~~~~-rGqGia~~L~~~~l~~a~~~~~kv~p~C 62 (78)
T PF14542_consen 28 TEVPPEL-RGQGIAKKLVEAALDYARENGLKVVPTC 62 (78)
T ss_dssp EEE-CSS-STTTHHHHHHHHHHHHHHHTT-EEEETS
T ss_pred EEECccc-cCCcHHHHHHHHHHHHHHHCCCEEEEEC
Confidence 4555544 788887776 78899999964
No 32
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=36.60 E-value=42 Score=19.92 Aligned_cols=17 Identities=29% Similarity=0.601 Sum_probs=14.3
Q ss_pred cChHHHHHHHHHHHHhh
Q 036503 85 ENSEKLQTWRNALKEAA 101 (112)
Q Consensus 85 ~~~e~v~~W~~AL~~v~ 101 (112)
++++....|..||..+.
T Consensus 87 ~s~~~~~~W~~~i~~~~ 103 (104)
T PF00169_consen 87 ESEEERKRWIQAIQKAI 103 (104)
T ss_dssp SSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 46788999999999875
No 33
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=36.27 E-value=39 Score=19.52 Aligned_cols=17 Identities=35% Similarity=0.691 Sum_probs=14.0
Q ss_pred cChHHHHHHHHHHHHhh
Q 036503 85 ENSEKLQTWRNALKEAA 101 (112)
Q Consensus 85 ~~~e~v~~W~~AL~~v~ 101 (112)
.+++..++|..||..++
T Consensus 85 ~s~~~~~~W~~~i~~~~ 101 (102)
T smart00233 85 ESEEEREEWVDALRKAI 101 (102)
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 35788999999998875
No 34
>PF04110 APG12: Ubiquitin-like autophagy protein Apg12 ; InterPro: IPR007242 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents Apg12, which is covalently bound to Apg5 [].; GO: 0000045 autophagic vacuole assembly, 0005737 cytoplasm; PDB: 1WZ3_B.
Probab=35.96 E-value=88 Score=20.03 Aligned_cols=55 Identities=16% Similarity=0.331 Sum_probs=33.6
Q ss_pred ccCCCCCCchHhHHHHHHh---hCCCceeeeCCC--CCCccchHHH---HhcCceeEeEEeecCCc
Q 036503 6 SEERTPETTLLAIYIQISL---DKNIRTFIDDQL--NRGDEISESL---KEYGQVVIPVFYRVDPS 63 (112)
Q Consensus 6 rg~d~~~~~F~shL~~aL~---~~gI~~F~D~~l--~~g~~i~~~l---~~~~~~ViPVFY~V~ps 63 (112)
++.++-. .++.+|.+.|+ +..+-.|++... ..-+.+..+. ...|..| |-|-.+|.
T Consensus 23 ~~~~~f~-~vi~fLrk~Lk~~~~~slFlYin~sFaPspDe~vg~L~~~f~~~~~Li--v~Ys~t~A 85 (87)
T PF04110_consen 23 SASQTFA-TVIAFLRKKLKLKPSDSLFLYINNSFAPSPDETVGDLYRCFGTNGELI--VSYSKTPA 85 (87)
T ss_dssp ETTSBTH-HHHHHHHHHCT----SS-EEEEEEEE---TTSBHHHHHHHH-BTTBEE--EEEESSS-
T ss_pred CCCCchH-HHHHHHHHHhCCccCCeEEEEEcCccCCCchhHHHHHHHHhCCCCEEE--EEEecccc
Confidence 3455556 88999999998 577888888733 2334555444 4455555 78877763
No 35
>PRK07933 thymidylate kinase; Validated
Probab=35.59 E-value=37 Score=24.68 Aligned_cols=32 Identities=9% Similarity=-0.018 Sum_probs=25.7
Q ss_pred CceecccCCCCC-CchHhHHHHHHhhCCCceee
Q 036503 1 MSLSVSEERTPE-TTLLAIYIQISLDKNIRTFI 32 (112)
Q Consensus 1 ~Flsfrg~d~~~-~~F~shL~~aL~~~gI~~F~ 32 (112)
|||.|-|-|..- +|.+..|.+.|..+|++|..
T Consensus 1 ~~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~ 33 (213)
T PRK07933 1 MLIAIEGVDGAGKRTLTEALRAALEARGRSVAT 33 (213)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 899998877542 37889999999999988754
No 36
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=35.51 E-value=1.2e+02 Score=24.57 Aligned_cols=16 Identities=50% Similarity=0.748 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHhhc
Q 036503 87 SEKLQTWRNALKEAAS 102 (112)
Q Consensus 87 ~e~v~~W~~AL~~v~~ 102 (112)
|.-++.|+.||+.++.
T Consensus 343 pny~~~w~~~l~~~~~ 358 (360)
T PF07429_consen 343 PNYLQGWRQALRLAAG 358 (360)
T ss_pred CchHHHHHHHHHHHhc
Confidence 5668899999987764
No 37
>PRK08943 lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; Validated
Probab=35.11 E-value=52 Score=25.25 Aligned_cols=45 Identities=16% Similarity=0.168 Sum_probs=30.0
Q ss_pred chHhHHHHHHhhCCCceeeeC-CCCCCccch-------------H-HH-HhcCceeEeEEe
Q 036503 14 TLLAIYIQISLDKNIRTFIDD-QLNRGDEIS-------------E-SL-KEYGQVVIPVFY 58 (112)
Q Consensus 14 ~F~shL~~aL~~~gI~~F~D~-~l~~g~~i~-------------~-~l-~~~~~~ViPVFY 58 (112)
.-+..+.++|++.++-.+.-| ...+++.+. + .| ...+..|+|+|-
T Consensus 189 ~~~r~i~kaLk~g~~v~il~Dq~~~~~~gv~v~FfG~~a~t~~g~a~LA~k~~apvvp~~~ 249 (314)
T PRK08943 189 DGIKPFISSVRQGYWGYYLPDEDHGPEHSVFVDFFATYKATLPGIGRLAKVCRARVVPLFP 249 (314)
T ss_pred hhHHHHHHHHhCCCeEEEeCCCCCCCCCCEEeCCCCCchhHhHHHHHHHHHhCCeEEEEEE
Confidence 346678899999999888866 442222221 1 11 677889999995
No 38
>PRK00194 hypothetical protein; Validated
Probab=35.09 E-value=48 Score=20.29 Aligned_cols=27 Identities=11% Similarity=0.159 Sum_probs=22.7
Q ss_pred eecccCCCCCCchHhHHHHHHhhCCCcee
Q 036503 3 LSVSEERTPETTLLAIYIQISLDKNIRTF 31 (112)
Q Consensus 3 lsfrg~d~~~~~F~shL~~aL~~~gI~~F 31 (112)
|++.|.|. . +.++.+...|...|+++-
T Consensus 6 ltv~g~Dr-p-Giva~vt~~la~~g~nI~ 32 (90)
T PRK00194 6 ITVIGKDK-V-GIIAGVSTVLAELNVNIL 32 (90)
T ss_pred EEEEcCCC-C-CHHHHHHHHHHHcCCCEE
Confidence 56788894 4 899999999999999873
No 39
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=33.48 E-value=38 Score=21.85 Aligned_cols=16 Identities=31% Similarity=0.518 Sum_probs=13.2
Q ss_pred cChHHHHHHHHHHHHh
Q 036503 85 ENSEKLQTWRNALKEA 100 (112)
Q Consensus 85 ~~~e~v~~W~~AL~~v 100 (112)
++++..+.|..||..|
T Consensus 91 ~s~~er~~WI~ai~~~ 106 (106)
T cd01238 91 PTEELRKRWIKALKQV 106 (106)
T ss_pred CCHHHHHHHHHHHHhC
Confidence 4578889999999875
No 40
>TIGR02453 conserved hypothetical protein TIGR02453. Members of this family are widely (though sparsely) distributed bacterial proteins about 230 residues in length. All members have a motif RxxRDxRFxxx[DN]KxxY. The function of this protein family is unknown. In several fungi, this model identifies a conserved region of a longer protein. Therefore, it may be incorrect to speculate that all members share a common function.
Probab=33.18 E-value=60 Score=24.00 Aligned_cols=54 Identities=24% Similarity=0.525 Sum_probs=36.4
Q ss_pred eeEeEEe-ecCCcccccccCchH---HHHHHHHHhhccChHHHHHHHHHHHHhhcccCccc
Q 036503 52 VVIPVFY-RVDPSDVRNQTGSFG---DSFSKLEERSKENSEKLQTWRNALKEAASLSGFPS 108 (112)
Q Consensus 52 ~ViPVFY-~V~psdVr~q~g~fg---~af~~~~~~~~~~~e~v~~W~~AL~~v~~~~G~~~ 108 (112)
.--|.|| +|+|..+.-..|.|. +++....+.+. +....|+.+|.......||.+
T Consensus 94 ~~~~gyY~hi~p~~~~~g~G~~~p~~~~L~~iR~~I~---~~~~~~~~il~~~~~~~~f~~ 151 (217)
T TIGR02453 94 LEAPGFYLHLQPDGSFAGGGLWGPEAETLAAVRAAIA---ENPDGWKAAVAALKFLRGFPL 151 (217)
T ss_pred CCCceEEEEEcCCCeEEEEEeCCCCHHHHHHHHHHHH---hCHHHHHHHHhChhhhccCCC
Confidence 3457776 799988877777774 55555555554 333788888877766566544
No 41
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=33.11 E-value=48 Score=25.90 Aligned_cols=31 Identities=26% Similarity=0.240 Sum_probs=26.3
Q ss_pred eecccCCCCCCchHhHHHHHHhhCCCceeeeC
Q 036503 3 LSVSEERTPETTLLAIYIQISLDKNIRTFIDD 34 (112)
Q Consensus 3 lsfrg~d~~~~~F~shL~~aL~~~gI~~F~D~ 34 (112)
||+.||=+-. .++..|.+.++++||.++++.
T Consensus 135 iSl~GEPlL~-p~l~eli~~~k~~Gi~~~L~T 165 (322)
T PRK13762 135 ISLSGEPTLY-PYLPELIEEFHKRGFTTFLVT 165 (322)
T ss_pred EeCCccccch-hhHHHHHHHHHHcCCCEEEEC
Confidence 5777888876 678888899999999999987
No 42
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=32.80 E-value=45 Score=20.64 Aligned_cols=16 Identities=25% Similarity=0.686 Sum_probs=13.4
Q ss_pred cChHHHHHHHHHHHHh
Q 036503 85 ENSEKLQTWRNALKEA 100 (112)
Q Consensus 85 ~~~e~v~~W~~AL~~v 100 (112)
++++..+.|..||..+
T Consensus 85 ~s~~e~~~Wi~ai~~~ 100 (101)
T cd01235 85 ENINEAQRWKEKIQQC 100 (101)
T ss_pred CCHHHHHHHHHHHHhh
Confidence 4678899999999875
No 43
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=32.67 E-value=80 Score=18.21 Aligned_cols=26 Identities=8% Similarity=0.129 Sum_probs=19.3
Q ss_pred cCCCCCCchHhHHHHHHhhCCCceee
Q 036503 7 EERTPETTLLAIYIQISLDKNIRTFI 32 (112)
Q Consensus 7 g~d~~~~~F~shL~~aL~~~gI~~F~ 32 (112)
|+..+...+...+..+|.+.||++..
T Consensus 8 G~~~~~~~~~~~i~~aL~~~~I~v~~ 33 (65)
T cd04918 8 GNVQRSSLILERAFHVLYTKGVNVQM 33 (65)
T ss_pred CCCCCCccHHHHHHHHHHHCCCCEEE
Confidence 44333447888999999999999854
No 44
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=32.58 E-value=42 Score=20.79 Aligned_cols=16 Identities=38% Similarity=0.601 Sum_probs=12.9
Q ss_pred cChHHHHHHHHHHHHh
Q 036503 85 ENSEKLQTWRNALKEA 100 (112)
Q Consensus 85 ~~~e~v~~W~~AL~~v 100 (112)
++++.+++|..||..+
T Consensus 81 ~s~~e~~~Wi~ai~~~ 96 (96)
T cd01260 81 ETLDDLSQWVNHLITA 96 (96)
T ss_pred CCHHHHHHHHHHHHhC
Confidence 4578899999999753
No 45
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=31.87 E-value=62 Score=19.18 Aligned_cols=26 Identities=15% Similarity=0.331 Sum_probs=22.4
Q ss_pred eecccCCCCCCchHhHHHHHHhhCCCce
Q 036503 3 LSVSEERTPETTLLAIYIQISLDKNIRT 30 (112)
Q Consensus 3 lsfrg~d~~~~~F~shL~~aL~~~gI~~ 30 (112)
++..|.|.+ ..+..+.+.|.+.|++.
T Consensus 2 vtv~G~Drp--Giv~~vt~~la~~~~nI 27 (75)
T cd04870 2 ITVTGPDRP--GLTSALTEVLAAHGVRI 27 (75)
T ss_pred EEEEcCCCC--CHHHHHHHHHHHCCCCE
Confidence 567888876 78999999999999987
No 46
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=31.74 E-value=28 Score=22.09 Aligned_cols=19 Identities=32% Similarity=0.618 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHhhcccC
Q 036503 87 SEKLQTWRNALKEAASLSG 105 (112)
Q Consensus 87 ~e~v~~W~~AL~~v~~~~G 105 (112)
.+-+.+|+.||..+++-.+
T Consensus 23 ~~Al~~W~~aL~k~~~~~~ 41 (80)
T PF10579_consen 23 QQALQKWRKALEKITDRED 41 (80)
T ss_pred HHHHHHHHHHHhhcCChHH
Confidence 4568999999999988654
No 47
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=30.53 E-value=52 Score=19.06 Aligned_cols=19 Identities=11% Similarity=0.284 Sum_probs=12.1
Q ss_pred HhHHHHHHhhCCCceeeeC
Q 036503 16 LAIYIQISLDKNIRTFIDD 34 (112)
Q Consensus 16 ~shL~~aL~~~gI~~F~D~ 34 (112)
+..+...|..+||.+++.+
T Consensus 12 a~~i~~~L~~~gI~~~v~~ 30 (67)
T PF09413_consen 12 AELIKGLLEENGIPAFVKN 30 (67)
T ss_dssp HHHHHHHHHHTT--EE--S
T ss_pred HHHHHHHHHhCCCcEEEEC
Confidence 4567778899999999977
No 48
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=30.39 E-value=45 Score=20.66 Aligned_cols=54 Identities=15% Similarity=0.055 Sum_probs=35.7
Q ss_pred ceecccCCCCCCchHhHHHHHHhhCCCceeeeC-CCC---------CC--ccchHHHHhcCceeEeE
Q 036503 2 SLSVSEERTPETTLLAIYIQISLDKNIRTFIDD-QLN---------RG--DEISESLKEYGQVVIPV 56 (112)
Q Consensus 2 Flsfrg~d~~~~~F~shL~~aL~~~gI~~F~D~-~l~---------~g--~~i~~~l~~~~~~ViPV 56 (112)
|.|.+|--.+. ++..+|..+|.++|.++-.-| +.. .+ ......+.....+++|+
T Consensus 4 ~~~~kgG~Gks-t~~~~la~~~~~~~~~vl~~d~d~~~d~viiD~p~~~~~~~~~~l~~ad~viv~~ 69 (104)
T cd02042 4 VANQKGGVGKT-TTAVNLAAALARRGKRVLLIDLDPQYDYIIIDTPPSLGLLTRNALAAADLVLIPV 69 (104)
T ss_pred EEeCCCCcCHH-HHHHHHHHHHHhCCCcEEEEeCCCCCCEEEEeCcCCCCHHHHHHHHHCCEEEEec
Confidence 66778877777 999999999999998875543 221 11 11112235667788886
No 49
>COG1560 HtrB Lauroyl/myristoyl acyltransferase [Cell envelope biogenesis, outer membrane]
Probab=30.23 E-value=1.4e+02 Score=23.35 Aligned_cols=43 Identities=21% Similarity=0.364 Sum_probs=28.9
Q ss_pred hHhHHHHHHhhCCCceeeeC-CCCCCccc-hHH-------------H-HhcCceeEeEE
Q 036503 15 LLAIYIQISLDKNIRTFIDD-QLNRGDEI-SES-------------L-KEYGQVVIPVF 57 (112)
Q Consensus 15 F~shL~~aL~~~gI~~F~D~-~l~~g~~i-~~~-------------l-~~~~~~ViPVF 57 (112)
=+..|.++|++-+.-.+..| +..+++.+ .+. | +..+-.|+|++
T Consensus 183 ~ir~li~~Lk~G~~v~~lpDqd~~~~~~vfvpFFg~~a~T~t~~~~LA~~~~a~vip~~ 241 (308)
T COG1560 183 GIRQLIKALKQGEAVGYLPDQDYGPGESVFVPFFGVPAATTTGPAKLARLTGAAVVPVF 241 (308)
T ss_pred hHHHHHHHHhcCCeEEEecCcccCCCCCeEeccCCCcccccchHHHHHHHhCCCEEEEE
Confidence 35568899999888777766 66555542 111 1 67777888887
No 50
>COG3175 COX11 Cytochrome oxidase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=30.17 E-value=41 Score=24.73 Aligned_cols=16 Identities=38% Similarity=0.640 Sum_probs=12.0
Q ss_pred eeEeEEeecCCccccc
Q 036503 52 VVIPVFYRVDPSDVRN 67 (112)
Q Consensus 52 ~ViPVFY~V~psdVr~ 67 (112)
+-+||+|-|||.-+..
T Consensus 145 vemPV~FfVDpd~~~d 160 (195)
T COG3175 145 VEMPVVFFVDPDFADD 160 (195)
T ss_pred EeccEEEEECcccccC
Confidence 3479999999976543
No 51
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=30.14 E-value=50 Score=19.69 Aligned_cols=16 Identities=38% Similarity=0.599 Sum_probs=12.7
Q ss_pred cChHHHHHHHHHHHHh
Q 036503 85 ENSEKLQTWRNALKEA 100 (112)
Q Consensus 85 ~~~e~v~~W~~AL~~v 100 (112)
++.+...+|..||..+
T Consensus 76 ~s~~e~~~Wi~al~~a 91 (91)
T cd01246 76 NSEEERQRWVDALELA 91 (91)
T ss_pred CCHHHHHHHHHHHHhC
Confidence 3578899999999753
No 52
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=29.85 E-value=44 Score=20.05 Aligned_cols=26 Identities=12% Similarity=0.220 Sum_probs=20.0
Q ss_pred eecccCCCCCCchHhHHHHHHhhCCCce
Q 036503 3 LSVSEERTPETTLLAIYIQISLDKNIRT 30 (112)
Q Consensus 3 lsfrg~d~~~~~F~shL~~aL~~~gI~~ 30 (112)
|+..|+|.+ ..++-+..+|.+.|+++
T Consensus 5 Itv~G~Drp--Giv~~v~~~l~~~g~ni 30 (76)
T PF13740_consen 5 ITVVGPDRP--GIVAAVTGVLAEHGCNI 30 (76)
T ss_dssp EEEEEE--T--THHHHHHHHHHCTT-EE
T ss_pred EEEEecCCC--cHHHHHHHHHHHCCCcE
Confidence 678898876 78999999999999877
No 53
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=29.73 E-value=65 Score=19.01 Aligned_cols=27 Identities=15% Similarity=0.110 Sum_probs=22.3
Q ss_pred eecccCCCCCCchHhHHHHHHhhCCCcee
Q 036503 3 LSVSEERTPETTLLAIYIQISLDKNIRTF 31 (112)
Q Consensus 3 lsfrg~d~~~~~F~shL~~aL~~~gI~~F 31 (112)
|+..|.| +. ..++-+...|.+.|++.-
T Consensus 2 l~v~g~D-~~-Giv~~it~~l~~~~~nI~ 28 (81)
T cd04869 2 VEVVGND-RP-GIVHEVTQFLAQRNINIE 28 (81)
T ss_pred EEEEeCC-CC-CHHHHHHHHHHHcCCCeE
Confidence 5678888 44 889999999999999863
No 54
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.31 E-value=68 Score=19.61 Aligned_cols=27 Identities=11% Similarity=0.089 Sum_probs=22.9
Q ss_pred eecccCCCCCCchHhHHHHHHhhCCCcee
Q 036503 3 LSVSEERTPETTLLAIYIQISLDKNIRTF 31 (112)
Q Consensus 3 lsfrg~d~~~~~F~shL~~aL~~~gI~~F 31 (112)
|++.|.|. . +.++.+...|.+.|++.-
T Consensus 4 l~i~g~D~-p-Giva~vt~~la~~g~nI~ 30 (88)
T cd04872 4 ITVVGKDR-V-GIVAGVSTKLAELNVNIL 30 (88)
T ss_pred EEEEcCCC-C-CHHHHHHHHHHHcCCCEE
Confidence 57789884 4 899999999999999873
No 55
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=29.06 E-value=71 Score=19.29 Aligned_cols=30 Identities=13% Similarity=0.161 Sum_probs=20.7
Q ss_pred chHhHHHHHHhhCCCceeeeC-CCCCCccch
Q 036503 14 TLLAIYIQISLDKNIRTFIDD-QLNRGDEIS 43 (112)
Q Consensus 14 ~F~shL~~aL~~~gI~~F~D~-~l~~g~~i~ 43 (112)
...--|...|+..|++|-+|. .-.-|..+.
T Consensus 18 ~~a~~la~~Lr~~g~~v~~d~~~~~l~k~i~ 48 (94)
T cd00861 18 ELAEKLYAELQAAGVDVLLDDRNERPGVKFA 48 (94)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCcccchh
Confidence 345567889999999999987 323444443
No 56
>PF13366 PDDEXK_3: PD-(D/E)XK nuclease superfamily
Probab=28.70 E-value=52 Score=22.22 Aligned_cols=9 Identities=56% Similarity=1.246 Sum_probs=6.6
Q ss_pred ceeEeEEee
Q 036503 51 QVVIPVFYR 59 (112)
Q Consensus 51 ~~ViPVFY~ 59 (112)
|.-+||+|+
T Consensus 45 q~~l~v~Yk 53 (118)
T PF13366_consen 45 QVPLPVYYK 53 (118)
T ss_pred eeeeeeEEC
Confidence 566788886
No 57
>PRK08419 lipid A biosynthesis lauroyl acyltransferase; Reviewed
Probab=28.43 E-value=72 Score=24.13 Aligned_cols=43 Identities=19% Similarity=0.370 Sum_probs=28.7
Q ss_pred HhHHHHHHhhCCCceeeeC-CCCCCccch-------------HH-H-HhcCceeEeEEe
Q 036503 16 LAIYIQISLDKNIRTFIDD-QLNRGDEIS-------------ES-L-KEYGQVVIPVFY 58 (112)
Q Consensus 16 ~shL~~aL~~~gI~~F~D~-~l~~g~~i~-------------~~-l-~~~~~~ViPVFY 58 (112)
+..+.++|++.++-.+.-| ...+++.+. +. | ...|-.|+|||.
T Consensus 173 ~r~~l~~Lk~g~~v~il~Dq~~~~~~gv~v~FfG~~a~~~~g~a~LA~k~~apvvpv~~ 231 (298)
T PRK08419 173 MKELLKALKQGRALGILVDQNVVPKEGVEVKFFNKRVTHTTIASILARRYNALIIPVFI 231 (298)
T ss_pred HHHHHHHHHcCCeEEEEecCCCCCCCCeEEecCCCCcccchhHHHHHHHHCCCEEEEEE
Confidence 5667799999998887755 442222221 11 1 678899999996
No 58
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=27.77 E-value=53 Score=21.21 Aligned_cols=16 Identities=31% Similarity=0.547 Sum_probs=12.8
Q ss_pred cChHHHHHHHHHHHHh
Q 036503 85 ENSEKLQTWRNALKEA 100 (112)
Q Consensus 85 ~~~e~v~~W~~AL~~v 100 (112)
++++..+.|..||.+|
T Consensus 83 ~s~~E~~~Wi~al~k~ 98 (98)
T cd01244 83 EAPVEATDWLNALEKQ 98 (98)
T ss_pred CCHHHHHHHHHHHhcC
Confidence 3567888999999875
No 59
>TIGR02208 lipid_A_msbB lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase. This family consists of MsbB in E. coli and closely related proteins in other species. MsbB is homologous to HtrB (TIGR02207) and acts immediately after it in the biosynthesis of KDO-2 lipid A (also called Re LPS and Re endotoxin). These two enzymes act after creation of KDO-2 lipid IV-A by addition of the KDO sugars.
Probab=26.92 E-value=95 Score=23.65 Aligned_cols=45 Identities=16% Similarity=0.171 Sum_probs=29.9
Q ss_pred chHhHHHHHHhhCCCceeeeC-CCCCCccch-H-------------HH-HhcCceeEeEEe
Q 036503 14 TLLAIYIQISLDKNIRTFIDD-QLNRGDEIS-E-------------SL-KEYGQVVIPVFY 58 (112)
Q Consensus 14 ~F~shL~~aL~~~gI~~F~D~-~l~~g~~i~-~-------------~l-~~~~~~ViPVFY 58 (112)
.-+..+.++|++.++-.+.-| ...+++.+. + .| ...+..|+|+|-
T Consensus 180 ~~~r~i~~aLk~g~~v~il~Dq~~~~~~gv~v~FfG~~a~t~~~~a~LA~~~~apvv~~~~ 240 (305)
T TIGR02208 180 AGIKALLASLKRGESGYYLPDEDHGPEQSVFVPFFATYKATLPVVGRLAKAGNAQVVPVFP 240 (305)
T ss_pred hhHHHHHHHHhCCCeEEEeCCCCCCCCCCeEeccCCCcchhHHHHHHHHHhcCCeEEEEEE
Confidence 346778899999999888866 442222221 1 11 677889999994
No 60
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=26.89 E-value=1.4e+02 Score=23.82 Aligned_cols=16 Identities=56% Similarity=0.750 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHHhhc
Q 036503 87 SEKLQTWRNALKEAAS 102 (112)
Q Consensus 87 ~e~v~~W~~AL~~v~~ 102 (112)
+.-++.|++||..+++
T Consensus 304 pn~~~~W~~~l~~~~g 319 (322)
T PRK02797 304 PNYLQGWRNALAIAAG 319 (322)
T ss_pred HhHHHHHHHHHHHhhC
Confidence 5668999999988765
No 61
>PRK08734 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=26.74 E-value=93 Score=23.80 Aligned_cols=48 Identities=15% Similarity=0.077 Sum_probs=31.1
Q ss_pred chHhHHHHHHhhCCCceeeeC-CCC--CCccc-----------hH-HH-HhcCceeEeEEeecC
Q 036503 14 TLLAIYIQISLDKNIRTFIDD-QLN--RGDEI-----------SE-SL-KEYGQVVIPVFYRVD 61 (112)
Q Consensus 14 ~F~shL~~aL~~~gI~~F~D~-~l~--~g~~i-----------~~-~l-~~~~~~ViPVFY~V~ 61 (112)
.-+..|.++|++.++-.+.-| ... .|-.+ .+ .| ...+..|+|+|..-.
T Consensus 171 ~~~r~li~~Lk~g~~v~~l~Dq~~~~~~gv~v~FfG~~a~t~~g~a~LA~~~~apVvp~~~~R~ 234 (305)
T PRK08734 171 PAVRQLFKVLKDGGAVGILPDQQPKMGDGVFAPFFGIPALTMTLVNRLAERTGATVLYGWCERI 234 (305)
T ss_pred hhHHHHHHHHhcCCeEEEeCCCCCCCCCCeEeccCCCccchhhHHHHHHHHhCCeEEEEEEEEc
Confidence 346778899999998888866 432 23211 01 11 677889999996433
No 62
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=26.52 E-value=1.1e+02 Score=17.74 Aligned_cols=29 Identities=17% Similarity=0.103 Sum_probs=20.6
Q ss_pred ecccCCCCCCchHhHHHHHHhhCCCceee
Q 036503 4 SVSEERTPETTLLAIYIQISLDKNIRTFI 32 (112)
Q Consensus 4 sfrg~d~~~~~F~shL~~aL~~~gI~~F~ 32 (112)
|-=|+..+.....+.+.++|.+.||++..
T Consensus 6 svVG~gm~~~gv~~ki~~~L~~~~I~v~~ 34 (66)
T cd04915 6 SVIGRDLSTPGVLARGLAALAEAGIEPIA 34 (66)
T ss_pred EEECCCCCcchHHHHHHHHHHHCCCCEEE
Confidence 33455444446788899999999999844
No 63
>PRK08706 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=26.02 E-value=97 Score=23.35 Aligned_cols=45 Identities=16% Similarity=0.194 Sum_probs=26.2
Q ss_pred chHhHHHHHHh-hCCCceeeeC-CCCCCccch-H-------------HH-HhcCceeEeEEe
Q 036503 14 TLLAIYIQISL-DKNIRTFIDD-QLNRGDEIS-E-------------SL-KEYGQVVIPVFY 58 (112)
Q Consensus 14 ~F~shL~~aL~-~~gI~~F~D~-~l~~g~~i~-~-------------~l-~~~~~~ViPVFY 58 (112)
.-+..+.++|+ +.++-.++-| ...+++.+. + .| ...+..|+|||-
T Consensus 164 ~~~r~i~k~L~k~~~~v~~l~Dq~~~~~~gv~v~FfG~~a~t~~g~a~LA~~~~apvvp~~~ 225 (289)
T PRK08706 164 EGLRALVKQFRKSSAPFLYLPDQDFGRNDSVFVDFFGIQTATITGLSRIAALANAKVIPAIP 225 (289)
T ss_pred hhHHHHHHHHHhCCceEEEeCCCCCCCCCCEEeccCCccchhhhHHHHHHHhcCCeEEEEEE
Confidence 34667889996 5545455544 442222221 1 11 677889999994
No 64
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.84 E-value=92 Score=18.23 Aligned_cols=26 Identities=15% Similarity=0.142 Sum_probs=22.0
Q ss_pred eecccCCCCCCchHhHHHHHHhhCCCce
Q 036503 3 LSVSEERTPETTLLAIYIQISLDKNIRT 30 (112)
Q Consensus 3 lsfrg~d~~~~~F~shL~~aL~~~gI~~ 30 (112)
|+..|.|.+ ..++.+...|.+.|++.
T Consensus 2 i~v~g~D~~--Giv~~it~~l~~~g~nI 27 (74)
T cd04875 2 LTLSCPDRP--GIVAAVSGFLAEHGGNI 27 (74)
T ss_pred EEEEcCCCC--CHHHHHHHHHHHcCCCE
Confidence 567788865 89999999999999986
No 65
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=25.83 E-value=62 Score=18.62 Aligned_cols=15 Identities=40% Similarity=0.720 Sum_probs=12.1
Q ss_pred ChHHHHHHHHHHHHh
Q 036503 86 NSEKLQTWRNALKEA 100 (112)
Q Consensus 86 ~~e~v~~W~~AL~~v 100 (112)
+++..+.|..||.++
T Consensus 85 ~~~~~~~W~~al~~~ 99 (99)
T cd00900 85 SEEEAQEWVEALQQA 99 (99)
T ss_pred CHHHHHHHHHHHhcC
Confidence 567889999999753
No 66
>PF06504 RepC: Replication protein C (RepC); InterPro: IPR010522 This family consists of several bacterial replication protein C (RepC) sequences.
Probab=25.66 E-value=59 Score=25.35 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHhhcccCcccCCCC
Q 036503 88 EKLQTWRNALKEAASLSGFPSQNIG 112 (112)
Q Consensus 88 e~v~~W~~AL~~v~~~~G~~~~~~~ 112 (112)
.+.++=|+||.+++.+ ||.+++|+
T Consensus 246 kRR~~lR~AL~El~~~-GW~V~e~~ 269 (281)
T PF06504_consen 246 KRRQRLRKALAELAAL-GWTVDEYA 269 (281)
T ss_pred HHHHHHHHHHHHHHHc-CeEEeecc
Confidence 3456789999999998 99988653
No 67
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=25.57 E-value=63 Score=18.39 Aligned_cols=16 Identities=38% Similarity=0.669 Sum_probs=12.5
Q ss_pred cChHHHHHHHHHHHHh
Q 036503 85 ENSEKLQTWRNALKEA 100 (112)
Q Consensus 85 ~~~e~v~~W~~AL~~v 100 (112)
.+++...+|.+||..+
T Consensus 81 ~s~~~~~~W~~~l~~~ 96 (96)
T cd00821 81 ESEEEREEWIEALQSA 96 (96)
T ss_pred CCHHHHHHHHHHHhcC
Confidence 3567889999999753
No 68
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=25.46 E-value=65 Score=17.82 Aligned_cols=28 Identities=25% Similarity=0.192 Sum_probs=21.4
Q ss_pred eecccCCCCCCchHhHHHHHHhhCCCceee
Q 036503 3 LSVSEERTPETTLLAIYIQISLDKNIRTFI 32 (112)
Q Consensus 3 lsfrg~d~~~~~F~shL~~aL~~~gI~~F~ 32 (112)
|.+..+|.+ ..++.+...|.+.||++-.
T Consensus 3 v~v~~~drp--G~l~~v~~~la~~~inI~~ 30 (66)
T PF01842_consen 3 VRVIVPDRP--GILADVTEILADHGINIDS 30 (66)
T ss_dssp EEEEEETST--THHHHHHHHHHHTTEEEEE
T ss_pred EEEEcCCCC--CHHHHHHHHHHHcCCCHHH
Confidence 455666654 7888999999999998743
No 69
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=25.26 E-value=75 Score=20.86 Aligned_cols=18 Identities=28% Similarity=0.647 Sum_probs=14.8
Q ss_pred cChHHHHHHHHHHHHhhc
Q 036503 85 ENSEKLQTWRNALKEAAS 102 (112)
Q Consensus 85 ~~~e~v~~W~~AL~~v~~ 102 (112)
++++..+.|..||..+..
T Consensus 97 ~s~~e~~~Wi~al~~~~~ 114 (125)
T cd01252 97 ANDEEMDEWIKSIKASIS 114 (125)
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 467889999999988763
No 70
>PRK06860 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=25.03 E-value=97 Score=23.68 Aligned_cols=43 Identities=16% Similarity=0.150 Sum_probs=28.8
Q ss_pred HhHHHHHHhhCCCceeeeC-CCCCCccc---------h--HH----H-HhcCceeEeEEe
Q 036503 16 LAIYIQISLDKNIRTFIDD-QLNRGDEI---------S--ES----L-KEYGQVVIPVFY 58 (112)
Q Consensus 16 ~shL~~aL~~~gI~~F~D~-~l~~g~~i---------~--~~----l-~~~~~~ViPVFY 58 (112)
+..+.++|++.++-.+.-| ....++.+ + +. | ...+..|+|+|-
T Consensus 184 ~r~~~k~Lk~g~~v~il~Dq~~~~~~gv~v~FfG~~~a~t~~g~a~LA~~~~apvvp~~~ 243 (309)
T PRK06860 184 LKGMIKALKKGERIWYAPDHDYGPRSSVFVPFFAVEQAATTTGTWMLARMSKAAVIPFVP 243 (309)
T ss_pred HHHHHHHHhcCCeEEEeCCCCCCCCCCEEecCCCCCchhhHHHHHHHHHHhCCeEEEEEE
Confidence 6788999999999888866 43222211 1 11 1 677889999995
No 71
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=24.77 E-value=1.1e+02 Score=17.41 Aligned_cols=29 Identities=10% Similarity=0.149 Sum_probs=20.5
Q ss_pred eecccCCC-CCCchHhHHHHHHhhCCCcee
Q 036503 3 LSVSEERT-PETTLLAIYIQISLDKNIRTF 31 (112)
Q Consensus 3 lsfrg~d~-~~~~F~shL~~aL~~~gI~~F 31 (112)
||--|... ....+...+..+|.+.||++.
T Consensus 4 isvvG~~~~~~~gi~~~if~aL~~~~I~v~ 33 (64)
T cd04937 4 VTIIGSRIRGVPGVMAKIVGALSKEGIEIL 33 (64)
T ss_pred EEEECCCccCCcCHHHHHHHHHHHCCCCEE
Confidence 34445544 223788899999999999984
No 72
>KOG2865 consensus NADH:ubiquinone oxidoreductase, NDUFA9/39kDa subunit [Energy production and conversion]
Probab=24.43 E-value=39 Score=27.03 Aligned_cols=28 Identities=43% Similarity=0.644 Sum_probs=22.5
Q ss_pred HhcCceeEeEEeecCCcccccc--cCchHHHH
Q 036503 47 KEYGQVVIPVFYRVDPSDVRNQ--TGSFGDSF 76 (112)
Q Consensus 47 ~~~~~~ViPVFY~V~psdVr~q--~g~fg~af 76 (112)
+...|++|| |.-||+++|+. +|..|+.+
T Consensus 83 k~GSQviiP--yR~d~~~~r~lkvmGdLGQvl 112 (391)
T KOG2865|consen 83 KMGSQVIIP--YRGDEYDPRHLKVMGDLGQVL 112 (391)
T ss_pred hcCCeEEEe--ccCCccchhheeeccccccee
Confidence 556699999 89999999986 68777653
No 73
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=23.91 E-value=74 Score=21.97 Aligned_cols=31 Identities=13% Similarity=0.097 Sum_probs=24.0
Q ss_pred eecccCCCCCCchHhHHHHHHhhCCCceeeeC
Q 036503 3 LSVSEERTPETTLLAIYIQISLDKNIRTFIDD 34 (112)
Q Consensus 3 lsfrg~d~~~~~F~shL~~aL~~~gI~~F~D~ 34 (112)
++|.|-+ -...++..|.++++..|+++.++.
T Consensus 65 Vt~SGGE-l~~~~l~~ll~~lk~~Gl~i~l~T 95 (147)
T TIGR02826 65 VLFLGGE-WNREALLSLLKIFKEKGLKTCLYT 95 (147)
T ss_pred EEEechh-cCHHHHHHHHHHHHHCCCCEEEEC
Confidence 6776666 454778888888999999888775
No 74
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=23.19 E-value=1.3e+02 Score=16.65 Aligned_cols=19 Identities=11% Similarity=0.111 Sum_probs=16.2
Q ss_pred chHhHHHHHHhhCCCceee
Q 036503 14 TLLAIYIQISLDKNIRTFI 32 (112)
Q Consensus 14 ~F~shL~~aL~~~gI~~F~ 32 (112)
.++..+.++|.+.||++-+
T Consensus 16 ~~~~~i~~~l~~~~I~v~~ 34 (66)
T cd04922 16 GVAATFFSALAKANVNIRA 34 (66)
T ss_pred cHHHHHHHHHHHCCCCEEE
Confidence 7888899999999998843
No 75
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=23.15 E-value=96 Score=22.60 Aligned_cols=33 Identities=33% Similarity=0.348 Sum_probs=24.3
Q ss_pred eecccCCCCCCchHhHHHHHHhhCCCceeeeC--CCCCC
Q 036503 3 LSVSEERTPETTLLAIYIQISLDKNIRTFIDD--QLNRG 39 (112)
Q Consensus 3 lsfrg~d~~~~~F~shL~~aL~~~gI~~F~D~--~l~~g 39 (112)
||=+|+- |...-|..+|.++|..+|+-| +++.|
T Consensus 39 LSgSGKS----tlACaL~q~L~qrgkl~Y~LDGDNvRhG 73 (207)
T KOG0635|consen 39 LSGSGKS----TLACALSQALLQRGKLTYILDGDNVRHG 73 (207)
T ss_pred cCCCCch----hHHHHHHHHHHhcCceEEEecCcccccc
Confidence 3445543 788899999999999999854 55444
No 76
>PF15409 PH_8: Pleckstrin homology domain
Probab=22.92 E-value=79 Score=20.28 Aligned_cols=15 Identities=40% Similarity=0.762 Sum_probs=12.3
Q ss_pred ChHHHHHHHHHHHHh
Q 036503 86 NSEKLQTWRNALKEA 100 (112)
Q Consensus 86 ~~e~v~~W~~AL~~v 100 (112)
+++..+.|..||..+
T Consensus 74 s~~~f~~Wv~aL~~a 88 (89)
T PF15409_consen 74 SQEDFQRWVSALQKA 88 (89)
T ss_pred CHHHHHHHHHHHHhc
Confidence 467789999999865
No 77
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=22.82 E-value=73 Score=19.04 Aligned_cols=15 Identities=27% Similarity=0.674 Sum_probs=12.2
Q ss_pred cChHHHHHHHHHHHH
Q 036503 85 ENSEKLQTWRNALKE 99 (112)
Q Consensus 85 ~~~e~v~~W~~AL~~ 99 (112)
++.+..++|..||..
T Consensus 79 ~s~~~~~~Wi~al~~ 93 (94)
T cd01250 79 DSEEERDDWISAIQE 93 (94)
T ss_pred CCHHHHHHHHHHHhc
Confidence 457889999999964
No 78
>TIGR02207 lipid_A_htrB lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase. This model represents a narrow clade of acyltransferases, nearly all of which transfer a lauroyl group to KDO2-lipid IV-A, a lipid A precursor; these proteins are termed lipid A biosynthesis lauroyl acyltransferase, HtrB. An exception is a closely related paralog of E. coli HtrB, LpxP, which acts in cold shock conditions by transferring a palmitoleoyl rather than lauroyl group to the lipid A precursor. Members of this family are homologous to the family of acyltransferases responsible for the next step in lipid A biosynthesis.
Probab=22.72 E-value=1.1e+02 Score=23.25 Aligned_cols=43 Identities=14% Similarity=0.071 Sum_probs=28.4
Q ss_pred HhHHHHHHhhCCCceeeeC-CCC--CCc-------c-c-hHH----H-HhcCceeEeEEe
Q 036503 16 LAIYIQISLDKNIRTFIDD-QLN--RGD-------E-I-SES----L-KEYGQVVIPVFY 58 (112)
Q Consensus 16 ~shL~~aL~~~gI~~F~D~-~l~--~g~-------~-i-~~~----l-~~~~~~ViPVFY 58 (112)
+..+.++|++.|+-.+.-| ... .|- + - .+. | ...+..|+|+|-
T Consensus 178 ~r~i~~~Lk~g~~v~il~Dq~~~~~~g~~v~FfG~~~a~~~~g~a~LA~~~~apvip~~~ 237 (303)
T TIGR02207 178 LRGMIKALKNGERIWYAPDHDYGRKSSVFVPFFAVPDAATTTGTSILARLSKCAVVPFTP 237 (303)
T ss_pred HHHHHHHHhCCCeEEEeCCCCCCCCCcEEeCCCCCCcchhHHHHHHHHHHhCCeEEEEEE
Confidence 6778999999998888866 432 221 2 1 111 1 677889999984
No 79
>PRK08905 lipid A biosynthesis lauroyl acyltransferase; Validated
Probab=22.65 E-value=1.1e+02 Score=23.19 Aligned_cols=45 Identities=16% Similarity=0.011 Sum_probs=29.1
Q ss_pred hHhHHHHHHhhCCCceeeeC-CCC--CCccc-----------hHH-H-HhcCceeEeEEee
Q 036503 15 LLAIYIQISLDKNIRTFIDD-QLN--RGDEI-----------SES-L-KEYGQVVIPVFYR 59 (112)
Q Consensus 15 F~shL~~aL~~~gI~~F~D~-~l~--~g~~i-----------~~~-l-~~~~~~ViPVFY~ 59 (112)
-+.-+.++|++.++-.+.-| ... .|..+ .+. | ...+-.|+|+|-.
T Consensus 160 ~~~~i~~aLk~g~~v~il~Dq~~~~~~g~~v~FfG~~a~~~~gpa~lA~~~~apvvp~~~~ 220 (289)
T PRK08905 160 GVRMLVKALRRGEAVGILPDQVPSGGEGVWAPFFGRPAYTMTLVARLAEVTGVPVIFVAGE 220 (289)
T ss_pred cHHHHHHHHhcCCeEEEcCCCCCCCCCceEecCCCCcchHHHHHHHHHHhhCCcEEEEEEE
Confidence 35567899999999888876 432 23221 111 1 6778899999943
No 80
>PF09838 DUF2065: Uncharacterized protein conserved in bacteria (DUF2065); InterPro: IPR019201 This entry represents a protein found in various prokaryotic proteins, and has no known function.
Probab=22.12 E-value=77 Score=18.55 Aligned_cols=15 Identities=33% Similarity=0.762 Sum_probs=12.1
Q ss_pred HHHHHHHHHhhcccC
Q 036503 91 QTWRNALKEAASLSG 105 (112)
Q Consensus 91 ~~W~~AL~~v~~~~G 105 (112)
++||+.+.++++++.
T Consensus 21 ~~~r~~l~~l~~~p~ 35 (57)
T PF09838_consen 21 ERWRRMLRQLAQLPD 35 (57)
T ss_pred HHHHHHHHHHHhCCH
Confidence 578999998888774
No 81
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=21.92 E-value=75 Score=21.50 Aligned_cols=29 Identities=3% Similarity=-0.093 Sum_probs=22.0
Q ss_pred ceecccCCCCCCchHhHHHHHHhhCCCce
Q 036503 2 SLSVSEERTPETTLLAIYIQISLDKNIRT 30 (112)
Q Consensus 2 Flsfrg~d~~~~~F~shL~~aL~~~gI~~ 30 (112)
||+--+.+.-.++...+|..+|.++|.+|
T Consensus 1 fI~~t~~~~GKT~va~~L~~~l~~~g~~V 29 (166)
T TIGR00347 1 FVTGTDTGVGKTVASSALAAKLKKAGYSV 29 (166)
T ss_pred CeecCCCCccHHHHHHHHHHHHHHCCCcE
Confidence 45555555555588999999999999876
No 82
>PRK08350 hypothetical protein; Provisional
Probab=21.66 E-value=66 Score=25.77 Aligned_cols=27 Identities=7% Similarity=-0.098 Sum_probs=23.9
Q ss_pred ceecccCCCCCCchHhHHHHHHhhCCCc
Q 036503 2 SLSVSEERTPETTLLAIYIQISLDKNIR 29 (112)
Q Consensus 2 Flsfrg~d~~~~~F~shL~~aL~~~gI~ 29 (112)
.+|+|--+|-. +|++||--+|.-..|+
T Consensus 285 vvSHRSGETeD-~~IAdLaVa~~agqIK 311 (341)
T PRK08350 285 ILAEAKYESAD-EALPHLAVGLRCPAML 311 (341)
T ss_pred EeecCCCCCcc-hhHHHHHHHhCCCccc
Confidence 57998778888 9999999999988886
No 83
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi.
Probab=21.62 E-value=1e+02 Score=26.15 Aligned_cols=50 Identities=18% Similarity=0.244 Sum_probs=34.4
Q ss_pred chHhHHHHHHhhCCCceeeeC-CCCCCccchHHHHhcCceeEeEEeecCCccccc
Q 036503 14 TLLAIYIQISLDKNIRTFIDD-QLNRGDEISESLKEYGQVVIPVFYRVDPSDVRN 67 (112)
Q Consensus 14 ~F~shL~~aL~~~gI~~F~D~-~l~~g~~i~~~l~~~~~~ViPVFY~V~psdVr~ 67 (112)
..+..|++.|...||.|..|| +...|..+ +...++=+|+---|.+..+..
T Consensus 490 ~~a~~l~~~L~~~gi~v~~DDr~~~~G~K~----~dadliGiP~~i~vG~~~l~~ 540 (568)
T TIGR00409 490 QLAEELYSELLAQGVDVLLDDRNERAGVKF----ADSELIGIPLRVVVGKKNLDN 540 (568)
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCHHHHH----HhhhhcCCCEEEEECCCcccC
Confidence 467789999999999999999 33344443 334445577776677765543
No 84
>PRK15183 Vi polysaccharide biosynthesis protein TviA; Provisional
Probab=21.38 E-value=1.3e+02 Score=20.33 Aligned_cols=23 Identities=26% Similarity=0.586 Sum_probs=17.5
Q ss_pred HHHHHHhhccChHHHHHHHHHHH
Q 036503 76 FSKLEERSKENSEKLQTWRNALK 98 (112)
Q Consensus 76 f~~~~~~~~~~~e~v~~W~~AL~ 98 (112)
.++++.++-+.+..+-+||..|+
T Consensus 101 meelqdrfmns~st~yrwrke~a 123 (143)
T PRK15183 101 MEELQDRFMNSSSTMYRWRKELA 123 (143)
T ss_pred HHHHHHHHccChHHHHHHHHHHH
Confidence 45666777777889999998764
No 85
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=21.21 E-value=1.2e+02 Score=17.65 Aligned_cols=27 Identities=11% Similarity=0.142 Sum_probs=19.7
Q ss_pred eecccCCCCCCchHhHHHHHHhhCCCce
Q 036503 3 LSVSEERTPETTLLAIYIQISLDKNIRT 30 (112)
Q Consensus 3 lsfrg~d~~~~~F~shL~~aL~~~gI~~ 30 (112)
++..|..... .+.+.+..+|.+.||++
T Consensus 4 vtv~~~~~~~-~~~a~if~~La~~~Inv 30 (67)
T cd04914 4 IKVKAKDNEN-DLQQRVFKALANAGISV 30 (67)
T ss_pred EEEecCCCCc-cHHHHHHHHHHHcCCcE
Confidence 3444555444 78888999999999987
No 86
>PRK08025 lipid A biosynthesis palmitoleoyl acyltransferase; Reviewed
Probab=21.11 E-value=1.3e+02 Score=22.85 Aligned_cols=43 Identities=14% Similarity=0.098 Sum_probs=28.6
Q ss_pred HhHHHHHHhhCCCceeeeC-CCC--CCccc---------hHH----H-HhcCceeEeEEe
Q 036503 16 LAIYIQISLDKNIRTFIDD-QLN--RGDEI---------SES----L-KEYGQVVIPVFY 58 (112)
Q Consensus 16 ~shL~~aL~~~gI~~F~D~-~l~--~g~~i---------~~~----l-~~~~~~ViPVFY 58 (112)
+..+.++|++.++-.+.-| ... .|-.+ ++. | ...+..|+|+|-
T Consensus 182 ~r~~~~aLk~g~~v~il~DQ~~~~~~gv~v~FfG~~~a~t~~g~~~LA~~~~apvvp~~~ 241 (305)
T PRK08025 182 LRGIVGALKKGEAVWFAPDQDYGPKGSSFAPFFAVENVATTNGTYVLSRLSGAAMLTVTM 241 (305)
T ss_pred HHHHHHHHhCCCeEEEeCCCCCCCCCCeEeCCCCCcchhHHHHHHHHHHhhCCeEEEEEE
Confidence 7788999999998888866 432 22211 011 1 677889999994
No 87
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=21.02 E-value=1.1e+02 Score=18.21 Aligned_cols=20 Identities=15% Similarity=0.267 Sum_probs=15.8
Q ss_pred eecccCCCCCCchHhHHHHHH
Q 036503 3 LSVSEERTPETTLLAIYIQIS 23 (112)
Q Consensus 3 lsfrg~d~~~~~F~shL~~aL 23 (112)
|.|.|+.... ..+++|.+.+
T Consensus 7 l~f~g~~~~~-piis~l~~~~ 26 (76)
T PF09383_consen 7 LTFTGNSAQE-PIISQLIREF 26 (76)
T ss_dssp EEEESCSSSS-CHHHHHHHHH
T ss_pred EEEcCCCcCc-hHHHHHHHHh
Confidence 6889988887 8888776665
No 88
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=20.96 E-value=91 Score=20.80 Aligned_cols=18 Identities=22% Similarity=0.475 Sum_probs=15.5
Q ss_pred ChHHHHHHHHHHHHhhcc
Q 036503 86 NSEKLQTWRNALKEAASL 103 (112)
Q Consensus 86 ~~e~v~~W~~AL~~v~~~ 103 (112)
+.+.+++|-.||..+|..
T Consensus 96 ~~ee~~~Wi~~I~~~~~~ 113 (117)
T cd01230 96 SLKELQSWIERINVVAAA 113 (117)
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 578899999999998864
No 89
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=20.90 E-value=88 Score=22.68 Aligned_cols=18 Identities=11% Similarity=0.283 Sum_probs=15.9
Q ss_pred hHHHHHHhhCCCceeeeC
Q 036503 17 AIYIQISLDKNIRTFIDD 34 (112)
Q Consensus 17 shL~~aL~~~gI~~F~D~ 34 (112)
..|.+++.++||+|.+|-
T Consensus 55 ~~Lv~~~h~~gi~VilD~ 72 (316)
T PF00128_consen 55 KELVDAAHKRGIKVILDV 72 (316)
T ss_dssp HHHHHHHHHTTCEEEEEE
T ss_pred hhhhhccccccceEEEee
Confidence 468899999999999996
No 90
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=20.87 E-value=58 Score=22.21 Aligned_cols=31 Identities=16% Similarity=0.011 Sum_probs=25.1
Q ss_pred CceecccCCCCCCchHhHHHHHHhhCCCceee
Q 036503 1 MSLSVSEERTPETTLLAIYIQISLDKNIRTFI 32 (112)
Q Consensus 1 ~Flsfrg~d~~~~~F~shL~~aL~~~gI~~F~ 32 (112)
++.|.+|--.+. +++.+|-.+|.++|-+|-.
T Consensus 2 ~v~~~kGG~GKT-t~a~~la~~la~~g~~Vll 32 (195)
T PF01656_consen 2 AVTSGKGGVGKT-TIAANLAQALARKGKKVLL 32 (195)
T ss_dssp EEEESSTTSSHH-HHHHHHHHHHHHTTS-EEE
T ss_pred EEEcCCCCccHH-HHHHHHHhccccccccccc
Confidence 357788888887 9999999999999998754
No 91
>PF01320 Colicin_Pyocin: Colicin immunity protein / pyocin immunity protein; InterPro: IPR023802 Bacterial colicin and pyocin immunity proteins [, ] can bind specifically to the DNase-type colicins and pyocins and inhibit their bactericidal activity. The 1.8-angstrom crystal structure of the ImmE7 protein consists of four antiparallel alpha-helices []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. Pyocin protects a cell that harbours the plasmid ColE2 encoding colicin E2 against colicin E2; it is thus essential both for autonomous replication and colicin E2 immunity []. This entry represents the structural domain of colicin and pyocin immunity proteins.; GO: 0015643 toxin binding, 0030153 bacteriocin immunity; PDB: 1GXH_A 1GXG_A 1MZ8_C 2ERH_A 1ZNV_C 1AYI_A 1UNK_A 2JBG_A 7CEI_A 1CEI_A ....
Probab=20.77 E-value=75 Score=20.30 Aligned_cols=15 Identities=27% Similarity=0.829 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHhhcccCc
Q 036503 88 EKLQTWRNALKEAASLSGF 106 (112)
Q Consensus 88 e~v~~W~~AL~~v~~~~G~ 106 (112)
+.|.+||+| -+++||
T Consensus 69 ~~vKeWRa~----nG~pgF 83 (85)
T PF01320_consen 69 KEVKEWRAS----NGKPGF 83 (85)
T ss_dssp HHHHHHHHH----TT---S
T ss_pred HHHHHHHHH----cCCCcc
Confidence 567899988 566665
No 92
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=20.72 E-value=1.5e+02 Score=25.33 Aligned_cols=48 Identities=8% Similarity=-0.082 Sum_probs=32.7
Q ss_pred chHhHHHHHHhhCCCceeeeC-CCCCCccch-HHH--------------HhcCceeEeEEeecCC
Q 036503 14 TLLAIYIQISLDKNIRTFIDD-QLNRGDEIS-ESL--------------KEYGQVVIPVFYRVDP 62 (112)
Q Consensus 14 ~F~shL~~aL~~~gI~~F~D~-~l~~g~~i~-~~l--------------~~~~~~ViPVFY~V~p 62 (112)
+.+..|.++|++.++..+.-| ...++ .+. +.+ ...+-.|+|+|..-.|
T Consensus 533 ~~~r~i~~aLk~g~~v~il~Dq~~~~~-~~~v~FfG~~a~~~~g~~~lA~~~~~pvv~~~~~~~~ 596 (656)
T PRK15174 533 DVVRACMQTLHSGQSLVVAIDGALNLS-APTIDFFGQQITYSTFCSRLAWKMHLPTVFSVPIWKN 596 (656)
T ss_pred hHHHHHHHHHHcCCeEEEEeCCCCCCC-CceeccCCCccCcCcHHHHHHHHHCCCEEEeEEEEec
Confidence 557789999999999888876 54322 222 111 6678899999974333
No 93
>cd07367 CarBb CarBb is the B subunit of the Class III Extradiol ring-cleavage dioxygenase, 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. CarBb is the B subunit of 2-aminophenol 1,6-dioxygenase (CarB), which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. It is a key enzyme in the carbazole degradation pathway isolated from bacterial strains with carbazole degradation ability. The enzyme is a heterotetramer composed of two A and two B subunits. CarB belongs to the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Although the enzyme was originally isolated as a meta-cleavage enzyme for 2'-aminobiphenyl-2,3-diol involved in carbazole degradation, it has also shown high specificity for 2,3-dihydroxybiphenyl.
Probab=20.69 E-value=2.8e+02 Score=20.89 Aligned_cols=68 Identities=7% Similarity=0.212 Sum_probs=40.5
Q ss_pred chHhHHHHHHhhCCCceeeeC--CCCCCccchHHH--HhcCceeEeEEeecCCccc--ccccCchHHHHHHHHH
Q 036503 14 TLLAIYIQISLDKNIRTFIDD--QLNRGDEISESL--KEYGQVVIPVFYRVDPSDV--RNQTGSFGDSFSKLEE 81 (112)
Q Consensus 14 ~F~shL~~aL~~~gI~~F~D~--~l~~g~~i~~~l--~~~~~~ViPVFY~V~psdV--r~q~g~fg~af~~~~~ 81 (112)
.+..+|.+.|.+.||.+=.++ .+-.|--+.-.+ ......||||+.+..-.-. ..+.-.+|++..+..+
T Consensus 91 ~LA~~i~~~l~~~g~~~~~~~~~~lDHG~~vPL~~l~p~~~iPvV~isin~~~~p~~~~~~~~~lG~al~~~i~ 164 (268)
T cd07367 91 EFARAFVRQAAEDGFDLAQAEELRPDHGVMVPLLFMGPKLDIPVVPLIVNINTDPAPSPRRCWALGKVLAQYVE 164 (268)
T ss_pred HHHHHHHHHHHHcCCCeeeecCccCCcchhchHHHhCCCCCCCEEEEEecccCCCCCCHHHHHHHHHHHHHHHH
Confidence 688899999999999765444 333443332222 2345679999987542111 1122357888877633
No 94
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=20.44 E-value=88 Score=18.58 Aligned_cols=20 Identities=20% Similarity=0.041 Sum_probs=16.2
Q ss_pred hHhHHHHHHhhCCCceeeeC
Q 036503 15 LLAIYIQISLDKNIRTFIDD 34 (112)
Q Consensus 15 F~shL~~aL~~~gI~~F~D~ 34 (112)
-.--+..+|++.|+++-+|.
T Consensus 16 ~a~~~~~~Lr~~g~~v~~d~ 35 (91)
T cd00860 16 YAKEVAKKLSDAGIRVEVDL 35 (91)
T ss_pred HHHHHHHHHHHCCCEEEEEC
Confidence 34467889999999998876
Done!