BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036504
(141 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1J09|A Chain A, Crystal Structure Of Thermus Thermophilus Glutamyl-Trna
Synthetase Complexed With Atp And Glu
pdb|1N75|A Chain A, Crystal Structure Of Thermus Thermophilus Glutamyl-Trna
Synthetase Complexed With Atp.
pdb|1N77|A Chain A, Crystal Structure Of Thermus Thermophilus Glutamyl-Trna
Synthetase Complexed With Trna(Glu) And Atp.
pdb|1N77|B Chain B, Crystal Structure Of Thermus Thermophilus Glutamyl-Trna
Synthetase Complexed With Trna(Glu) And Atp.
pdb|1N78|A Chain A, Crystal Structure Of Thermus Thermophilus Glutamyl-Trna
Synthetase Complexed With Trna(Glu) And Glutamol-Amp.
pdb|1N78|B Chain B, Crystal Structure Of Thermus Thermophilus Glutamyl-Trna
Synthetase Complexed With Trna(Glu) And Glutamol-Amp.
pdb|2CUZ|A Chain A, Glutamyl-Trna Synthetase From Thermus Thermophilus In
Complex With L-Glutamate
pdb|2CV0|A Chain A, Glutamyl-Trna Synthetase From Thermus Thermophilus In
Complex With Trna(Glu) And L-Glutamate
pdb|2CV0|B Chain B, Glutamyl-Trna Synthetase From Thermus Thermophilus In
Complex With Trna(Glu) And L-Glutamate
pdb|2CV1|A Chain A, Glutamyl-Trna Synthetase From Thermus Thermophilus In
Complex With Trna(Glu), Atp, And An Analog Of
L-Glutamate: A Quaternary Complex
pdb|2CV1|B Chain B, Glutamyl-Trna Synthetase From Thermus Thermophilus In
Complex With Trna(Glu), Atp, And An Analog Of
L-Glutamate: A Quaternary Complex
pdb|2CV2|A Chain A, Glutamyl-Trna Synthetase From Thermus Thermophilus In
Complex With Trna(Glu) And An Enzyme Inhibitor, Glu-Ams
pdb|2CV2|B Chain B, Glutamyl-Trna Synthetase From Thermus Thermophilus In
Complex With Trna(Glu) And An Enzyme Inhibitor, Glu-Ams
pdb|2DXI|A Chain A, 2.2 A Crystal Structure Of Glutamyl-Trna Synthetase From
Thermus Thermophilus Complexed With Trna(Glu), Atp, And
L- Glutamol
pdb|2DXI|B Chain B, 2.2 A Crystal Structure Of Glutamyl-Trna Synthetase From
Thermus Thermophilus Complexed With Trna(Glu), Atp, And
L- Glutamol
Length = 468
Score = 28.5 bits (62), Expect = 1.3, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 85 MSLLEQAAEEYGFDRGGALTVPCQPSELEKILAEQGDDDGSSVNV 129
+ L ++ AEE RG A P ELE+I E+G DG + N+
Sbjct: 86 LPLYQKYAEEL-LKRGWAYRAFETPEELEQIRKEKGGYDGRARNI 129
>pdb|1G59|A Chain A, Glutamyl-Trna Synthetase Complexed With Trna(Glu).
pdb|1G59|C Chain C, Glutamyl-Trna Synthetase Complexed With Trna(Glu).
pdb|1GLN|A Chain A, Architectures Of Class-Defining And Specific Domains Of
Glutamyl-Trna Synthetase
Length = 468
Score = 28.5 bits (62), Expect = 1.4, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 85 MSLLEQAAEEYGFDRGGALTVPCQPSELEKILAEQGDDDGSSVNV 129
+ L ++ AEE RG A P ELE+I E+G DG + N+
Sbjct: 86 LPLYQKYAEEL-LKRGWAYRAFETPEELEQIRKEKGGYDGRARNI 129
>pdb|3OVP|A Chain A, Crystal Structure Of Hrpe
pdb|3OVP|B Chain B, Crystal Structure Of Hrpe
pdb|3OVQ|A Chain A, Crytal Structure Of Hrpe And D-Ribulose-5-Phospate Complex
pdb|3OVQ|B Chain B, Crytal Structure Of Hrpe And D-Ribulose-5-Phospate Complex
pdb|3OVR|A Chain A, Crystal Structure Of Hrpe And D-Xylulose 5-Phosphate
Complex
pdb|3OVR|B Chain B, Crystal Structure Of Hrpe And D-Xylulose 5-Phosphate
Complex
Length = 228
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 15/72 (20%)
Query: 37 ECEEIGDSSTNYVPEDVKEGHVAVLAMDGNDQAKRFIVPLNYLSHPTFMSLLEQAAEEYG 96
EC + DS +Y+ DV +GH VP HP SL +Q ++
Sbjct: 22 ECLRMLDSGADYLHLDVMDGH---------------FVPNITFGHPVVESLRKQLGQDPF 66
Query: 97 FDRGGALTVPCQ 108
FD ++ P Q
Sbjct: 67 FDMHMMVSKPEQ 78
>pdb|3QC3|A Chain A, Crystal Structure Of A D-Ribulose-5-Phosphate-3-Epimerase
(Np_954699) From Homo Sapiens At 2.20 A Resolution
pdb|3QC3|B Chain B, Crystal Structure Of A D-Ribulose-5-Phosphate-3-Epimerase
(Np_954699) From Homo Sapiens At 2.20 A Resolution
Length = 225
Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 15/72 (20%)
Query: 37 ECEEIGDSSTNYVPEDVKEGHVAVLAMDGNDQAKRFIVPLNYLSHPTFMSLLEQAAEEYG 96
EC DS +Y+ DV +GH VP HP SL +Q ++
Sbjct: 23 ECLRXLDSGADYLHLDVXDGH---------------FVPNITFGHPVVESLRKQLGQDPF 67
Query: 97 FDRGGALTVPCQ 108
FD ++ P Q
Sbjct: 68 FDXHXXVSKPEQ 79
>pdb|3BGH|A Chain A, Crystal Structure Of Putative Neuraminyllactose-Binding
Hemagglutinin Homolog From Helicobacter Pylori
pdb|3BGH|B Chain B, Crystal Structure Of Putative Neuraminyllactose-Binding
Hemagglutinin Homolog From Helicobacter Pylori
Length = 236
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 49 VPEDVKEGHVAVLAMDGN 66
+P+D+KE + VL MDGN
Sbjct: 88 IPQDIKEKALLVLRMDGN 105
>pdb|1DIA|A Chain A, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly249543
pdb|1DIA|B Chain B, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly249543
pdb|1DIB|A Chain A, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly345899
pdb|1DIB|B Chain B, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly345899
pdb|1DIG|A Chain A, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly374571
pdb|1DIG|B Chain B, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly374571
Length = 306
Score = 26.9 bits (58), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 43 DSSTNYVPEDVKEGHVAVLAMDGNDQAKR---FIVPLNYLSHPTFMSLLEQAAEE 94
D NYVP+D K V+ D+AK FI P+ P +++L Q+ E
Sbjct: 235 DCGINYVPDDKKPNGRKVVGDVAYDEAKERASFITPVPGGVGPMTVAMLMQSTVE 289
>pdb|3K2E|A Chain A, Crystal Structure Of Enoyl-(Acyl-Carrier-Protein)
Reductase From Anaplasma Phagocytophilum At 1.9a
Resolution
pdb|3K2E|B Chain B, Crystal Structure Of Enoyl-(Acyl-Carrier-Protein)
Reductase From Anaplasma Phagocytophilum At 1.9a
Resolution
pdb|3K31|A Chain A, Crystal Structure Of Eonyl-(Acyl-Carrier-Protein)
Reductase From Anaplasma Phagocytophilum In Complex With
Nad At 1.9a Resolution
pdb|3K31|B Chain B, Crystal Structure Of Eonyl-(Acyl-Carrier-Protein)
Reductase From Anaplasma Phagocytophilum In Complex With
Nad At 1.9a Resolution
Length = 296
Score = 26.9 bits (58), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 11/52 (21%)
Query: 74 VPLNYLSHPTFMSLLEQAAEEYGFDRGGALTVPCQPSELE------KILAEQ 119
V L YLS TF ++ AE G LTVPC S+ E K+LAE+
Sbjct: 59 VALTYLSE-TFKKRVDPLAESLGVK----LTVPCDVSDAESVDNMFKVLAEE 105
>pdb|1A4I|A Chain A, Human Tetrahydrofolate Dehydrogenase CYCLOHYDROLASE
pdb|1A4I|B Chain B, Human Tetrahydrofolate Dehydrogenase CYCLOHYDROLASE
Length = 301
Score = 26.9 bits (58), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 43 DSSTNYVPEDVKEGHVAVLAMDGNDQAKR---FIVPLNYLSHPTFMSLLEQAAEE 94
D NYVP+D K V+ D+AK FI P+ P +++L Q+ E
Sbjct: 235 DCGINYVPDDKKPNGRKVVGDVAYDEAKERASFITPVPGGVGPMTVAMLMQSTVE 289
>pdb|2FBE|A Chain A, Crystal Structure Of The Pryspry-Domain
pdb|2FBE|B Chain B, Crystal Structure Of The Pryspry-Domain
pdb|2FBE|C Chain C, Crystal Structure Of The Pryspry-Domain
pdb|2FBE|D Chain D, Crystal Structure Of The Pryspry-Domain
Length = 201
Score = 26.9 bits (58), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 43 DSSTNY--VPEDVKEGHVAVLAMDGNDQAKRFIVPLNYLSHPTFMS 86
D++ NY + ED++ L+ + +QA+RF L L P F S
Sbjct: 17 DTANNYLIISEDLRSFRSGDLSQNRKEQAERFDTALCVLGTPRFTS 62
>pdb|2P61|A Chain A, Crystal Structure Of Protein Tm1646 From Thermotoga
Maritima, Pfam Duf327
Length = 162
Score = 25.8 bits (55), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 65 GNDQAKRFIVPLNYLSHPTFMSLLEQAAEEYGFDRGGALTVPCQPSELEK 114
G + K F L + F LLE+A EE D G L PS L++
Sbjct: 30 GESKKKEFFDILEDVKEDHFEKLLEEAVEEV-IDSGNELVRSPTPSNLKR 78
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.132 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,863,772
Number of Sequences: 62578
Number of extensions: 151594
Number of successful extensions: 295
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 294
Number of HSP's gapped (non-prelim): 11
length of query: 141
length of database: 14,973,337
effective HSP length: 89
effective length of query: 52
effective length of database: 9,403,895
effective search space: 489002540
effective search space used: 489002540
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 46 (22.3 bits)