Query 036504
Match_columns 141
No_of_seqs 156 out of 625
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 02:44:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036504.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036504hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03090 auxin-responsive fami 100.0 4.7E-35 1E-39 215.4 9.1 91 12-119 13-103 (104)
2 PF02519 Auxin_inducible: Auxi 100.0 4.8E-34 1E-38 208.0 9.1 95 13-120 6-100 (100)
3 PLN03219 uncharacterized prote 100.0 9.9E-33 2.1E-37 204.1 10.6 71 48-119 34-105 (108)
4 PLN03220 uncharacterized prote 100.0 3.3E-32 7.2E-37 200.4 9.7 72 49-120 31-104 (105)
5 PRK02899 adaptor protein; Prov 84.0 0.93 2E-05 36.5 2.6 25 81-105 38-62 (197)
6 PF02214 BTB_2: BTB/POZ domain 83.1 0.77 1.7E-05 31.5 1.6 53 70-122 8-63 (94)
7 PRK02315 adaptor protein; Prov 78.9 1.6 3.4E-05 35.9 2.3 25 81-105 38-62 (233)
8 PF05389 MecA: Negative regula 74.1 1 2.2E-05 36.1 0.0 25 81-105 38-62 (220)
9 cd05992 PB1 The PB1 domain is 55.7 38 0.00083 22.1 4.9 49 69-121 11-70 (81)
10 smart00666 PB1 PB1 domain. Pho 52.0 33 0.0007 22.6 4.1 47 69-120 12-69 (81)
11 PRK13701 psiB plasmid SOS inhi 46.8 34 0.00074 26.9 4.0 55 48-103 78-134 (144)
12 COG0635 HemN Coproporphyrinoge 45.9 34 0.00073 30.4 4.3 65 56-129 87-155 (416)
13 PRK09057 coproporphyrinogen II 44.3 31 0.00067 29.8 3.8 47 57-112 56-102 (380)
14 smart00153 VHP Villin headpiec 42.8 11 0.00023 22.9 0.5 18 78-95 1-18 (36)
15 PRK13347 coproporphyrinogen II 42.3 49 0.0011 29.4 4.8 49 55-112 102-150 (453)
16 PF02209 VHP: Villin headpiece 42.0 9.1 0.0002 23.3 0.1 19 78-96 1-19 (36)
17 PF11834 DUF3354: Domain of un 41.8 21 0.00046 24.5 1.9 16 83-98 27-42 (69)
18 PRK06582 coproporphyrinogen II 40.2 35 0.00076 29.8 3.5 47 57-112 63-109 (390)
19 PRK08898 coproporphyrinogen II 38.6 47 0.001 28.9 4.1 47 57-112 74-120 (394)
20 PRK09249 coproporphyrinogen II 38.2 58 0.0012 28.8 4.6 49 55-112 101-149 (453)
21 cd06080 MUM1_like Mutated mela 36.2 57 0.0012 22.9 3.4 43 54-96 28-74 (80)
22 PRK07379 coproporphyrinogen II 35.4 54 0.0012 28.6 3.9 48 56-112 66-113 (400)
23 PRK05660 HemN family oxidoredu 34.2 75 0.0016 27.5 4.6 49 55-112 57-105 (378)
24 PRK09058 coproporphyrinogen II 31.9 67 0.0015 28.5 4.0 48 56-112 114-161 (449)
25 PRK08599 coproporphyrinogen II 30.8 77 0.0017 27.1 4.1 48 56-112 51-98 (377)
26 PF00651 BTB: BTB/POZ domain; 30.0 1E+02 0.0023 20.5 4.0 47 70-120 21-72 (111)
27 TIGR00538 hemN oxygen-independ 29.9 1E+02 0.0022 27.2 4.8 49 55-112 101-149 (455)
28 cd01406 SIR2-like Sir2-like: P 29.5 67 0.0015 25.5 3.3 36 56-100 1-36 (242)
29 TIGR00539 hemN_rel putative ox 29.0 68 0.0015 27.3 3.5 47 57-112 52-98 (360)
30 PF12058 DUF3539: Protein of u 28.7 10 0.00022 27.6 -1.4 11 77-87 4-14 (88)
31 PF07104 DUF1366: Protein of u 28.6 1E+02 0.0023 23.2 4.0 42 52-95 15-56 (116)
32 PRK05628 coproporphyrinogen II 28.4 80 0.0017 27.0 3.8 47 57-112 60-106 (375)
33 PF11822 DUF3342: Domain of un 27.5 85 0.0018 27.6 3.8 50 69-121 13-67 (317)
34 PRK02797 4-alpha-L-fucosyltran 27.4 2.5E+02 0.0055 24.8 6.7 68 52-119 141-227 (322)
35 PF14317 YcxB: YcxB-like prote 26.6 1.1E+02 0.0023 18.4 3.2 34 53-90 27-60 (62)
36 PF06290 PsiB: Plasmid SOS inh 26.3 2.2E+02 0.0049 22.4 5.6 50 48-99 78-130 (143)
37 PRK08207 coproporphyrinogen II 25.9 96 0.0021 28.2 4.0 43 56-107 218-261 (488)
38 PF02100 ODC_AZ: Ornithine dec 25.3 47 0.001 24.3 1.6 50 69-119 24-77 (108)
39 cd06398 PB1_Joka2 The PB1 doma 23.1 2.6E+02 0.0056 19.8 5.1 48 69-116 11-71 (91)
40 PF09906 DUF2135: Uncharacteri 23.1 1.1E+02 0.0023 19.5 2.8 19 58-76 30-50 (50)
41 COG1759 5-formaminoimidazole-4 22.8 38 0.00083 30.2 0.8 25 50-76 87-112 (361)
42 COG4862 MecA Negative regulato 22.4 58 0.0013 27.3 1.8 28 79-106 36-63 (224)
43 TIGR03793 TOMM_pelo TOMM prope 22.3 1.4E+02 0.003 20.8 3.4 27 79-105 14-44 (77)
44 PF08948 DUF1859: Domain of un 22.1 37 0.00081 25.8 0.5 28 54-85 86-123 (126)
45 PF13421 Band_7_1: SPFH domain 22.1 1.6E+02 0.0035 23.7 4.3 45 50-99 16-64 (211)
46 KOG0460 Mitochondrial translat 22.0 1.8E+02 0.0039 26.6 4.9 30 72-101 176-209 (449)
47 cd06399 PB1_P40 The PB1 domain 20.8 92 0.002 22.8 2.3 27 70-96 16-42 (92)
48 PF05419 GUN4: GUN4-like ; In 20.5 11 0.00023 28.8 -2.7 25 50-85 108-132 (132)
49 cd06410 PB1_UP2 Uncharacterize 20.1 3.4E+02 0.0074 19.5 5.4 47 59-112 17-76 (97)
No 1
>PLN03090 auxin-responsive family protein; Provisional
Probab=100.00 E-value=4.7e-35 Score=215.42 Aligned_cols=91 Identities=34% Similarity=0.599 Sum_probs=77.7
Q ss_pred CCHHHHHHHHHHhHhccCCccccccccccccCCCCCCCCcCCCCCeEEEEEecCCCceeeEEEccCCcCcHHHHHHHHHH
Q 036504 12 NGIKIVVKKIQNSLLLGKKKILFADECEEIGDSSTNYVPEDVKEGHVAVLAMDGNDQAKRFIVPLNYLSHPTFMSLLEQA 91 (141)
Q Consensus 12 ~kLk~~akKwQk~~~~~rk~~s~~~~~~~~~~~~~~~~~~~v~kG~~aVYVg~g~e~~~RfvVp~~yL~hP~F~~LL~~a 91 (141)
-.||+++|||++++..+. . . . ...|.+||+||||||||++ ++||+||++|||||+|++||++|
T Consensus 13 ~~~kq~l~r~~s~~~~~~---~--~-----~----~~~~~~vpkG~~aVyVG~~---~~RfvVp~~~L~hP~F~~LL~~a 75 (104)
T PLN03090 13 AMLKQILKRCSSLGKKQG---Y--D-----E----DGLPLDVPKGHFPVYVGEN---RSRYIVPISFLTHPEFQSLLQQA 75 (104)
T ss_pred HHHHHHHHHHHHhcccCC---c--c-----c----ccCCCCCCCCcEEEEECCC---CEEEEEEHHHcCCHHHHHHHHHH
Confidence 456999999987744321 1 0 0 1357889999999999653 79999999999999999999999
Q ss_pred HHhcCCCCCCceeecCCHHHHHHHHHHh
Q 036504 92 AEEYGFDRGGALTVPCQPSELEKILAEQ 119 (141)
Q Consensus 92 eeEfG~~~~G~L~IPC~~~~Fe~lL~~~ 119 (141)
||||||+++|+|+|||++++|+++||++
T Consensus 76 eeEfGf~~~G~L~IPC~~~~Fe~ll~~i 103 (104)
T PLN03090 76 EEEFGFDHDMGLTIPCEEVVFRSLTSMI 103 (104)
T ss_pred HHHhCCCCCCcEEEeCCHHHHHHHHHHh
Confidence 9999999999999999999999999997
No 2
>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []. Proteins from this ARG7 auxin responsive genes family have no identified functional role [].
Probab=100.00 E-value=4.8e-34 Score=207.96 Aligned_cols=95 Identities=37% Similarity=0.566 Sum_probs=77.2
Q ss_pred CHHHHHHHHHHhHhccCCccccccccccccCCCCCCCCcCCCCCeEEEEEecCCCceeeEEEccCCcCcHHHHHHHHHHH
Q 036504 13 GIKIVVKKIQNSLLLGKKKILFADECEEIGDSSTNYVPEDVKEGHVAVLAMDGNDQAKRFIVPLNYLSHPTFMSLLEQAA 92 (141)
Q Consensus 13 kLk~~akKwQk~~~~~rk~~s~~~~~~~~~~~~~~~~~~~v~kG~~aVYVg~g~e~~~RfvVp~~yL~hP~F~~LL~~ae 92 (141)
+....++||+++....++..+.... ....++|+|||+||||+ | ++||+||++|||||+|++||++||
T Consensus 6 k~~~~~~k~~~~~~~~~~~~~~~~~----------~~~~~vp~G~~~VyVG~--~-~~Rfvvp~~~L~hp~f~~LL~~ae 72 (100)
T PF02519_consen 6 KSLASAKKWQSRARSKSSSSSSSRS----------SSESDVPKGHFAVYVGE--E-RRRFVVPVSYLNHPLFQELLEQAE 72 (100)
T ss_pred HHHHHHHhhhhhhhhcccccccccc----------cccCCCCCCeEEEEeCc--c-ceEEEechHHcCchhHHHHHHHHh
Confidence 3445567777776665544432211 12367899999999965 3 899999999999999999999999
Q ss_pred HhcCCCCCCceeecCCHHHHHHHHHHhc
Q 036504 93 EEYGFDRGGALTVPCQPSELEKILAEQG 120 (141)
Q Consensus 93 eEfG~~~~G~L~IPC~~~~Fe~lL~~~~ 120 (141)
|||||+++|+|+|||++++||++||++.
T Consensus 73 eEfG~~~~G~l~iPC~~~~Fe~~l~~le 100 (100)
T PF02519_consen 73 EEFGFDQDGPLTIPCDVVLFEHLLWLLE 100 (100)
T ss_pred hhcCcCCCCcEEeeCCHHHHHHHHHHhC
Confidence 9999999999999999999999999863
No 3
>PLN03219 uncharacterized protein; Provisional
Probab=100.00 E-value=9.9e-33 Score=204.05 Aligned_cols=71 Identities=38% Similarity=0.724 Sum_probs=65.6
Q ss_pred CCCcCCCCCeEEEEEecCCCceeeEEEccCCcCcHHHHHHHHHHHHhcCCCC-CCceeecCCHHHHHHHHHHh
Q 036504 48 YVPEDVKEGHVAVLAMDGNDQAKRFIVPLNYLSHPTFMSLLEQAAEEYGFDR-GGALTVPCQPSELEKILAEQ 119 (141)
Q Consensus 48 ~~~~~v~kG~~aVYVg~g~e~~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~-~G~L~IPC~~~~Fe~lL~~~ 119 (141)
..+.+|||||||||||+++| ++||+||++|||||+|++||++|||||||++ +|+|+|||+++.|++||...
T Consensus 34 ~~~~~vpkGh~aVYVG~~~E-~kRFvVPi~yL~hP~F~~LL~~AeEEfGf~~~~G~L~IPCd~~~F~~ll~~~ 105 (108)
T PLN03219 34 TTSGLVPKGHVAVYVGEQME-KKRFVVPISYLNHPLFREFLNRAEEECGFHHSMGGLTIPCREESFLHLITSH 105 (108)
T ss_pred CCCCCCCCCeEEEEECCCCC-ceEEEEEHHHcCChHHHHHHHHHHHHhCCCCCCCCEEEeCCHHHHHHHHHhh
Confidence 45788999999999987555 8999999999999999999999999999997 59999999999999999864
No 4
>PLN03220 uncharacterized protein; Provisional
Probab=99.97 E-value=3.3e-32 Score=200.42 Aligned_cols=72 Identities=38% Similarity=0.772 Sum_probs=64.9
Q ss_pred CCcCCCCCeEEEEEecCCC-ceeeEEEccCCcCcHHHHHHHHHHHHhcCCCC-CCceeecCCHHHHHHHHHHhc
Q 036504 49 VPEDVKEGHVAVLAMDGND-QAKRFIVPLNYLSHPTFMSLLEQAAEEYGFDR-GGALTVPCQPSELEKILAEQG 120 (141)
Q Consensus 49 ~~~~v~kG~~aVYVg~g~e-~~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~-~G~L~IPC~~~~Fe~lL~~~~ 120 (141)
.+.+|||||||||||+++| +++||+||++|||||+|++||++|||||||+| +|+|+|||+++.|+++|....
T Consensus 31 ~~~~VPkGh~aVyVGe~~~~e~kRFVVPv~yL~hP~F~~LL~~AeEEfGf~~~~G~L~IPCd~~~F~~ll~s~~ 104 (105)
T PLN03220 31 SSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGFNHPMGGLTIPCREEVFLDLIASRL 104 (105)
T ss_pred ccCCCCCCeEEEEECCCCCccceEEEEEHHHcCChHHHHHHHHHHHHhCCCCCCCCEEeeCCHHHHHHHHHhhc
Confidence 4678999999999987432 37999999999999999999999999999998 599999999999999998743
No 5
>PRK02899 adaptor protein; Provisional
Probab=84.00 E-value=0.93 Score=36.52 Aligned_cols=25 Identities=32% Similarity=0.743 Sum_probs=21.6
Q ss_pred cHHHHHHHHHHHHhcCCCCCCceee
Q 036504 81 HPTFMSLLEQAAEEYGFDRGGALTV 105 (141)
Q Consensus 81 hP~F~~LL~~aeeEfG~~~~G~L~I 105 (141)
+-+|.++|++|..|+||..+|||+|
T Consensus 38 e~lF~~mm~Ea~~e~~F~~~~pl~~ 62 (197)
T PRK02899 38 HQLFRDMMQEANKELGFEADGPIAV 62 (197)
T ss_pred HHHHHHHHHHhhhccCcccCCeEEE
Confidence 3477888999999999999999875
No 6
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=83.06 E-value=0.77 Score=31.54 Aligned_cols=53 Identities=17% Similarity=0.127 Sum_probs=40.3
Q ss_pred eeEEEccCCcC-c--HHHHHHHHHHHHhcCCCCCCceeecCCHHHHHHHHHHhcCC
Q 036504 70 KRFIVPLNYLS-H--PTFMSLLEQAAEEYGFDRGGALTVPCQPSELEKILAEQGDD 122 (141)
Q Consensus 70 ~RfvVp~~yL~-h--P~F~~LL~~aeeEfG~~~~G~L~IPC~~~~Fe~lL~~~~~~ 122 (141)
++|.++.+.|. + ..|..|++.......-..+|.+-|-++...|++||.-++.+
T Consensus 8 ~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiDRdp~~F~~IL~ylr~~ 63 (94)
T PF02214_consen 8 TIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFIDRDPELFEYILNYLRTG 63 (94)
T ss_dssp EEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEESS-HHHHHHHHHHHHHT
T ss_pred EEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEeccChhhhhHHHHHHhhc
Confidence 89999998887 4 47888888642222233469999999999999999998864
No 7
>PRK02315 adaptor protein; Provisional
Probab=78.90 E-value=1.6 Score=35.92 Aligned_cols=25 Identities=28% Similarity=0.456 Sum_probs=22.6
Q ss_pred cHHHHHHHHHHHHhcCCCCCCceee
Q 036504 81 HPTFMSLLEQAAEEYGFDRGGALTV 105 (141)
Q Consensus 81 hP~F~~LL~~aeeEfG~~~~G~L~I 105 (141)
+-+|.++|++|..|+||..+|||+|
T Consensus 38 e~fF~~mm~Ea~~e~~F~~~~pl~~ 62 (233)
T PRK02315 38 EEFFYSMMDEVDEEDDFADEGPLWF 62 (233)
T ss_pred HHHHHHHHHHhccccCcccCCeEEE
Confidence 3589999999999999999999986
No 8
>PF05389 MecA: Negative regulator of genetic competence (MecA); InterPro: IPR008681 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. This family contains several bacterial MecA proteins. In complex media competence development is poor, and there is little or no expression of late competence genes. Overexpression of MecA inhibits comG transcription [, , ]. MecA enables the recognition and targeting of unfolded and aggregated proteins to the ClpC protease or to other proteins involved in proteolysis. Acts negatively in the development of competence by binding ComK and recruiting it to the ClpCP protease. When overexpressed, inhibits sporulation. Also involved in Spx degradation by ClpC. ; PDB: 3JTP_C 2Y1R_O 3PXI_c 3PXG_b 3JTO_D 3JTN_A.
Probab=74.08 E-value=1 Score=36.14 Aligned_cols=25 Identities=48% Similarity=0.748 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHhcCCCCCCceee
Q 036504 81 HPTFMSLLEQAAEEYGFDRGGALTV 105 (141)
Q Consensus 81 hP~F~~LL~~aeeEfG~~~~G~L~I 105 (141)
+-+|.++|++|.+|+||..+|||++
T Consensus 38 e~fF~~ileea~~e~~F~~~~~l~~ 62 (220)
T PF05389_consen 38 EEFFYSILEEADEEHGFENDGPLTF 62 (220)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHhccccCcccCCeEEE
Confidence 4578999999999999999999885
No 9
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=55.70 E-value=38 Score=22.10 Aligned_cols=49 Identities=29% Similarity=0.538 Sum_probs=36.9
Q ss_pred eeeEEEccCCcCcHHHHHHHHHHHHhcCCC----------CCC-ceeecCCHHHHHHHHHHhcC
Q 036504 69 AKRFIVPLNYLSHPTFMSLLEQAAEEYGFD----------RGG-ALTVPCQPSELEKILAEQGD 121 (141)
Q Consensus 69 ~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~----------~~G-~L~IPC~~~~Fe~lL~~~~~ 121 (141)
.+||.+|. .++.|.+|..+..+.|++. .+| .++|.++ ..|+.++.+...
T Consensus 11 ~~~~~~~~---~~~s~~~L~~~i~~~~~~~~~~~~l~y~D~e~d~v~l~sd-~Dl~~a~~~~~~ 70 (81)
T cd05992 11 IRRFVVVS---RSISFEDLRSKIAEKFGLDAVSFKLKYPDEDGDLVTISSD-EDLEEAIEEARR 70 (81)
T ss_pred CEEEEEec---CCCCHHHHHHHHHHHhCCCCCcEEEEeeCCCCCEEEeCCH-HHHHHHHHHHhh
Confidence 79999997 8889999999999988875 134 3556555 577777777653
No 10
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=51.96 E-value=33 Score=22.64 Aligned_cols=47 Identities=26% Similarity=0.532 Sum_probs=35.6
Q ss_pred eeeEEEccCCcCcHHHHHHHHHHHHhcCCC----------CCC-ceeecCCHHHHHHHHHHhc
Q 036504 69 AKRFIVPLNYLSHPTFMSLLEQAAEEYGFD----------RGG-ALTVPCQPSELEKILAEQG 120 (141)
Q Consensus 69 ~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~----------~~G-~L~IPC~~~~Fe~lL~~~~ 120 (141)
.+||.||- .+.|.+|..+..+.|+.. .+| .++|.++. .|+.++.+..
T Consensus 12 ~~~~~~~~----~~s~~dL~~~i~~~~~~~~~~~~l~Y~Dedgd~v~l~sd~-Dl~~a~~~~~ 69 (81)
T smart00666 12 TRRLSVPR----DISFEDLRSKVAKRFGLDNQSFTLKYQDEDGDLVSLTSDE-DLEEAIEEYD 69 (81)
T ss_pred EEEEEECC----CCCHHHHHHHHHHHhCCCCCCeEEEEECCCCCEEEecCHH-HHHHHHHHHH
Confidence 79999986 778999999999988874 234 67788865 5666666654
No 11
>PRK13701 psiB plasmid SOS inhibition protein B; Provisional
Probab=46.80 E-value=34 Score=26.92 Aligned_cols=55 Identities=20% Similarity=0.236 Sum_probs=42.8
Q ss_pred CCCcCCCCCeEEEEEecCCCceeeEEEccCCcCcHHHHHHHHHHHH--hcCCCCCCce
Q 036504 48 YVPEDVKEGHVAVLAMDGNDQAKRFIVPLNYLSHPTFMSLLEQAAE--EYGFDRGGAL 103 (141)
Q Consensus 48 ~~~~~v~kG~~aVYVg~g~e~~~RfvVp~~yL~hP~F~~LL~~aee--EfG~~~~G~L 103 (141)
|+|.++..+.++|++-.|++ .-..+.-.+-++-.....+|...++ .+||.+.-.|
T Consensus 78 CSpG~~sP~W~~Vl~~~gG~-~~a~v~~~~~~~Pe~i~~~L~~~a~l~~~gys~~~ii 134 (144)
T PRK13701 78 CSPGDVSPVWVLVLVNAGGE-PFAVVQVQDRFAPEAISHSLALAASLDAQGYSVNDII 134 (144)
T ss_pred eCCCCCCcceEEEEEcCCCc-EEEEEEecCccCHHHHHHHHHHHHHhhhcCCcHHHHH
Confidence 68999999999999977765 5666666777777888899999886 6788754333
No 12
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=45.92 E-value=34 Score=30.44 Aligned_cols=65 Identities=22% Similarity=0.292 Sum_probs=47.3
Q ss_pred CeEEEEEecCCCceeeEEEccCCcCcHHHHHHHHHHHHhc-CCCCCCceeecCCHHHH--HHHHHHhcCC-CCCCccc
Q 036504 56 GHVAVLAMDGNDQAKRFIVPLNYLSHPTFMSLLEQAAEEY-GFDRGGALTVPCQPSEL--EKILAEQGDD-DGSSVNV 129 (141)
Q Consensus 56 G~~aVYVg~g~e~~~RfvVp~~yL~hP~F~~LL~~aeeEf-G~~~~G~L~IPC~~~~F--e~lL~~~~~~-~~~s~~~ 129 (141)
-.-.||.|+|.- ++|+-..+..||+...+-| +.+.+.-|+|.+++..| +.+-.....+ +.-|.|+
T Consensus 87 ~v~ti~~GGGTP---------slL~~~~l~~ll~~l~~~~~~~~~~~EitiE~nP~~~~~e~~~~l~~~GvNRiSlGV 155 (416)
T COG0635 87 EVKTIYFGGGTP---------SLLSPEQLERLLKALRELFNDLDPDAEITIEANPGTVEAEKFKALKEAGVNRISLGV 155 (416)
T ss_pred eEEEEEECCCcc---------ccCCHHHHHHHHHHHHHhcccCCCCceEEEEeCCCCCCHHHHHHHHHcCCCEEEecc
Confidence 467899987643 8899999999999999999 46666889999888744 3444443333 4455554
No 13
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=44.33 E-value=31 Score=29.80 Aligned_cols=47 Identities=15% Similarity=0.260 Sum_probs=37.7
Q ss_pred eEEEEEecCCCceeeEEEccCCcCcHHHHHHHHHHHHhcCCCCCCceeecCCHHHH
Q 036504 57 HVAVLAMDGNDQAKRFIVPLNYLSHPTFMSLLEQAAEEYGFDRGGALTVPCQPSEL 112 (141)
Q Consensus 57 ~~aVYVg~g~e~~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~~G~L~IPC~~~~F 112 (141)
.-.||+|+|.- .+|+...+.+||+...+.|.+..+..+++-|.+..+
T Consensus 56 i~tiy~GGGTP---------s~l~~~~L~~ll~~i~~~f~~~~~~eit~E~~P~~i 102 (380)
T PRK09057 56 LTSIFFGGGTP---------SLMQPETVAALLDAIARLWPVADDIEITLEANPTSV 102 (380)
T ss_pred cCeEEeCCCcc---------ccCCHHHHHHHHHHHHHhCCCCCCccEEEEECcCcC
Confidence 34799987643 678889999999999999988766678988777544
No 14
>smart00153 VHP Villin headpiece domain.
Probab=42.81 E-value=11 Score=22.91 Aligned_cols=18 Identities=33% Similarity=0.619 Sum_probs=16.5
Q ss_pred CcCcHHHHHHHHHHHHhc
Q 036504 78 YLSHPTFMSLLEQAAEEY 95 (141)
Q Consensus 78 yL~hP~F~~LL~~aeeEf 95 (141)
||+.-.|++++.|+.+||
T Consensus 1 yLsdeeF~~vfgmsr~eF 18 (36)
T smart00153 1 YLSDEDFEEVFGMTREEF 18 (36)
T ss_pred CCCHHHHHHHHCCCHHHH
Confidence 789999999999999997
No 15
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=42.26 E-value=49 Score=29.35 Aligned_cols=49 Identities=14% Similarity=0.251 Sum_probs=39.5
Q ss_pred CCeEEEEEecCCCceeeEEEccCCcCcHHHHHHHHHHHHhcCCCCCCceeecCCHHHH
Q 036504 55 EGHVAVLAMDGNDQAKRFIVPLNYLSHPTFMSLLEQAAEEYGFDRGGALTVPCQPSEL 112 (141)
Q Consensus 55 kG~~aVYVg~g~e~~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~~G~L~IPC~~~~F 112 (141)
.+...||.|+|.- ..|+.+.+.+|++...+.|++..+..+++-|++..+
T Consensus 102 ~~v~~i~fgGGTP---------s~l~~~~l~~ll~~i~~~~~~~~~~e~tie~~p~~l 150 (453)
T PRK13347 102 RRVSQLHWGGGTP---------TILNPDQFERLMAALRDAFDFAPEAEIAVEIDPRTV 150 (453)
T ss_pred CeEEEEEEcCccc---------ccCCHHHHHHHHHHHHHhCCCCCCceEEEEeccccC
Confidence 3567888887643 678999999999999999988766678888887766
No 16
>PF02209 VHP: Villin headpiece domain; InterPro: IPR003128 Villin is an F-actin bundling protein involved in the maintenance of the microvilli of the absorptive epithelia. The villin-type "headpiece" domain is a modular motif found at the extreme C terminus of larger "core" domains in over 25 cytoskeletal proteins in plants and animals, often in assocation with the Gelsolin repeat. Although the headpiece is classified as an F-actin-binding domain, it has been shown that not all headpiece domains are intrinsically F-actin-binding motifs, surface charge distribution may be an important element for F-actin recognition []. An autonomously folding, 35 residue, thermostable subdomain (HP36) of the full-length 76 amino acid residue villin headpiece, is the smallest known example of a cooperatively folded domain of a naturally occurring protein. The structure of HP36, as determined by NMR spectroscopy, consists of three short helices surrounding a tightly packed hydrophobic core []. ; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1ZV6_A 1QZP_A 1UND_A 2PPZ_A 3TJW_B 1YU8_X 2JM0_A 1WY4_A 3MYC_A 1YU5_X ....
Probab=42.02 E-value=9.1 Score=23.30 Aligned_cols=19 Identities=32% Similarity=0.523 Sum_probs=15.1
Q ss_pred CcCcHHHHHHHHHHHHhcC
Q 036504 78 YLSHPTFMSLLEQAAEEYG 96 (141)
Q Consensus 78 yL~hP~F~~LL~~aeeEfG 96 (141)
||+.-.|++++.|+.+||.
T Consensus 1 YLsd~dF~~vFgm~~~eF~ 19 (36)
T PF02209_consen 1 YLSDEDFEKVFGMSREEFY 19 (36)
T ss_dssp GS-HHHHHHHHSS-HHHHH
T ss_pred CcCHHHHHHHHCCCHHHHH
Confidence 7899999999999999973
No 17
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=41.77 E-value=21 Score=24.48 Aligned_cols=16 Identities=38% Similarity=0.760 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHhcCCC
Q 036504 83 TFMSLLEQAAEEYGFD 98 (141)
Q Consensus 83 ~F~~LL~~aeeEfG~~ 98 (141)
.+++||+.|++.||+.
T Consensus 27 SleeLl~ia~~kfg~~ 42 (69)
T PF11834_consen 27 SLEELLKIASEKFGFS 42 (69)
T ss_pred cHHHHHHHHHHHhCCC
Confidence 5899999999999985
No 18
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=40.24 E-value=35 Score=29.83 Aligned_cols=47 Identities=9% Similarity=0.174 Sum_probs=38.2
Q ss_pred eEEEEEecCCCceeeEEEccCCcCcHHHHHHHHHHHHhcCCCCCCceeecCCHHHH
Q 036504 57 HVAVLAMDGNDQAKRFIVPLNYLSHPTFMSLLEQAAEEYGFDRGGALTVPCQPSEL 112 (141)
Q Consensus 57 ~~aVYVg~g~e~~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~~G~L~IPC~~~~F 112 (141)
.-.||.|+|.- .+|+...+..||+...+.|++.....+++-|.+..+
T Consensus 63 i~tiy~GGGTP---------s~l~~~~l~~ll~~i~~~~~~~~~~eitiE~nP~~~ 109 (390)
T PRK06582 63 IKSIFFGGGTP---------SLMNPVIVEGIINKISNLAIIDNQTEITLETNPTSF 109 (390)
T ss_pred eeEEEECCCcc---------ccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCcC
Confidence 34799987643 789999999999999998888766679998888765
No 19
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=38.61 E-value=47 Score=28.88 Aligned_cols=47 Identities=19% Similarity=0.263 Sum_probs=37.7
Q ss_pred eEEEEEecCCCceeeEEEccCCcCcHHHHHHHHHHHHhcCCCCCCceeecCCHHHH
Q 036504 57 HVAVLAMDGNDQAKRFIVPLNYLSHPTFMSLLEQAAEEYGFDRGGALTVPCQPSEL 112 (141)
Q Consensus 57 ~~aVYVg~g~e~~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~~G~L~IPC~~~~F 112 (141)
.-.||+|+|.- .+|+...+.+|++...+.|.+..+-.+++-|.+..+
T Consensus 74 i~siy~GGGTP---------s~L~~~~L~~ll~~i~~~~~~~~~~eit~E~~p~~~ 120 (394)
T PRK08898 74 VHTVFIGGGTP---------SLLSAAGLDRLLSDVRALLPLDPDAEITLEANPGTF 120 (394)
T ss_pred eeEEEECCCCc---------CCCCHHHHHHHHHHHHHhCCCCCCCeEEEEECCCCC
Confidence 33789987743 778999999999999999988766678888876554
No 20
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=38.15 E-value=58 Score=28.83 Aligned_cols=49 Identities=18% Similarity=0.316 Sum_probs=38.4
Q ss_pred CCeEEEEEecCCCceeeEEEccCCcCcHHHHHHHHHHHHhcCCCCCCceeecCCHHHH
Q 036504 55 EGHVAVLAMDGNDQAKRFIVPLNYLSHPTFMSLLEQAAEEYGFDRGGALTVPCQPSEL 112 (141)
Q Consensus 55 kG~~aVYVg~g~e~~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~~G~L~IPC~~~~F 112 (141)
.+.-.||+|+|.- .+|+.+.+.+|++...+.|++..+..+++-+++..+
T Consensus 101 ~~v~~i~~gGGtP---------s~l~~~~l~~ll~~l~~~~~~~~~~e~tie~np~~l 149 (453)
T PRK09249 101 RPVSQLHWGGGTP---------TFLSPEQLRRLMALLREHFNFAPDAEISIEIDPREL 149 (453)
T ss_pred CceEEEEECCccc---------ccCCHHHHHHHHHHHHHhCCCCCCCEEEEEecCCcC
Confidence 3566899986643 668999999999999999887655678888877655
No 21
>cd06080 MUM1_like Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA). MUM-1 belongs to the mutated or aberrantly expressed type of MAAs, along with antigens such as CDK4, beta-catenin, gp100-in4, p15, and N-acetylglucosaminyltransferase V. It is highly expressed in several types of human cancers. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=36.19 E-value=57 Score=22.93 Aligned_cols=43 Identities=23% Similarity=0.245 Sum_probs=34.5
Q ss_pred CCCeEEEEEecC-CCceeeEEEccCCcCcHHH---HHHHHHHHHhcC
Q 036504 54 KEGHVAVLAMDG-NDQAKRFIVPLNYLSHPTF---MSLLEQAAEEYG 96 (141)
Q Consensus 54 ~kG~~aVYVg~g-~e~~~RfvVp~~yL~hP~F---~~LL~~aeeEfG 96 (141)
++-+.+.+.|++ .-...++.+..-|+.|+.+ |.|+++|.|.|.
T Consensus 28 ~~k~~V~FfG~~~~~a~~~~~~l~p~~~~~~~~ek~~~~~k~ke~~~ 74 (80)
T cd06080 28 KQKARVNFIGDNMQSEKKGIRVVKRWLKHFDCTEKQKLTNKAKESYE 74 (80)
T ss_pred CCEEEEEEeCCCCceeccchhhcccccccHHHHHHHHHHHHHHHHHH
Confidence 556777788876 3336888899999999999 589999999875
No 22
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=35.41 E-value=54 Score=28.64 Aligned_cols=48 Identities=15% Similarity=0.285 Sum_probs=37.7
Q ss_pred CeEEEEEecCCCceeeEEEccCCcCcHHHHHHHHHHHHhcCCCCCCceeecCCHHHH
Q 036504 56 GHVAVLAMDGNDQAKRFIVPLNYLSHPTFMSLLEQAAEEYGFDRGGALTVPCQPSEL 112 (141)
Q Consensus 56 G~~aVYVg~g~e~~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~~G~L~IPC~~~~F 112 (141)
+.-.||.|+|.- .+|+...+.+||+...+.|+...+..+++-+++..+
T Consensus 66 ~i~~iy~GGGTp---------s~l~~~~l~~ll~~i~~~~~~~~~~eit~E~~P~~l 113 (400)
T PRK07379 66 PLQTVFFGGGTP---------SLLSVEQLERILTTLDQRFGIAPDAEISLEIDPGTF 113 (400)
T ss_pred ceeEEEECCCcc---------ccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCcC
Confidence 455889987643 678999999999999999988766778887765544
No 23
>PRK05660 HemN family oxidoreductase; Provisional
Probab=34.17 E-value=75 Score=27.45 Aligned_cols=49 Identities=14% Similarity=0.273 Sum_probs=38.6
Q ss_pred CCeEEEEEecCCCceeeEEEccCCcCcHHHHHHHHHHHHhcCCCCCCceeecCCHHHH
Q 036504 55 EGHVAVLAMDGNDQAKRFIVPLNYLSHPTFMSLLEQAAEEYGFDRGGALTVPCQPSEL 112 (141)
Q Consensus 55 kG~~aVYVg~g~e~~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~~G~L~IPC~~~~F 112 (141)
.+.-.||+|+|.- ..|+-..+.+|++...+.|+...+-.+++-|.+..+
T Consensus 57 ~~v~ti~~GGGtP---------s~l~~~~l~~ll~~l~~~~~~~~~~eit~e~np~~l 105 (378)
T PRK05660 57 REVHSIFIGGGTP---------SLFSAEAIQRLLDGVRARLPFAPDAEITMEANPGTV 105 (378)
T ss_pred CceeEEEeCCCcc---------ccCCHHHHHHHHHHHHHhCCCCCCcEEEEEeCcCcC
Confidence 4566899987643 678889999999999999987655568888876554
No 24
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=31.94 E-value=67 Score=28.53 Aligned_cols=48 Identities=17% Similarity=0.096 Sum_probs=38.3
Q ss_pred CeEEEEEecCCCceeeEEEccCCcCcHHHHHHHHHHHHhcCCCCCCceeecCCHHHH
Q 036504 56 GHVAVLAMDGNDQAKRFIVPLNYLSHPTFMSLLEQAAEEYGFDRGGALTVPCQPSEL 112 (141)
Q Consensus 56 G~~aVYVg~g~e~~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~~G~L~IPC~~~~F 112 (141)
..-.||+|+|-- .+|+...+..|++...+.|....+-.+++-|.+..|
T Consensus 114 ~i~~iy~GGGTP---------s~L~~~~l~~ll~~i~~~~~l~~~~eitiE~~p~~~ 161 (449)
T PRK09058 114 PIHAVYFGGGTP---------TALSAEDLARLITALREYLPLAPDCEITLEGRINGF 161 (449)
T ss_pred eeeEEEECCCcc---------ccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCcCcC
Confidence 456799987643 678889999999999999988767778888877655
No 25
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=30.78 E-value=77 Score=27.07 Aligned_cols=48 Identities=17% Similarity=0.185 Sum_probs=35.8
Q ss_pred CeEEEEEecCCCceeeEEEccCCcCcHHHHHHHHHHHHhcCCCCCCceeecCCHHHH
Q 036504 56 GHVAVLAMDGNDQAKRFIVPLNYLSHPTFMSLLEQAAEEYGFDRGGALTVPCQPSEL 112 (141)
Q Consensus 56 G~~aVYVg~g~e~~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~~G~L~IPC~~~~F 112 (141)
+.-.||+|+|.- ..|+.+.+.+||+...+.|+...+..+++-+.+..+
T Consensus 51 ~i~~i~~gGGtp---------t~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l 98 (377)
T PRK08599 51 KLKTIYIGGGTP---------TALSAEQLERLLTAIHRNLPLSGLEEFTFEANPGDL 98 (377)
T ss_pred ceeEEEeCCCCc---------ccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCCC
Confidence 444689986532 458899999999999999887544567877777554
No 26
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=29.99 E-value=1e+02 Score=20.51 Aligned_cols=47 Identities=30% Similarity=0.484 Sum_probs=33.5
Q ss_pred eeEEEccCCc--CcHHHHHHHHHHHHhcCCCCCC--ceeec-CCHHHHHHHHHHhc
Q 036504 70 KRFIVPLNYL--SHPTFMSLLEQAAEEYGFDRGG--ALTVP-CQPSELEKILAEQG 120 (141)
Q Consensus 70 ~RfvVp~~yL--~hP~F~~LL~~aeeEfG~~~~G--~L~IP-C~~~~Fe~lL~~~~ 120 (141)
++|-+.-..| ..|.|+.+++.. +....+ .+.++ ++...|+.+|.-+-
T Consensus 21 ~~~~vhk~iL~~~S~~F~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~l~~~Y 72 (111)
T PF00651_consen 21 KTFYVHKNILAARSPYFRNLFEGS----KFKESTVPEISLPDVSPEAFEAFLEYMY 72 (111)
T ss_dssp EEEEE-HHHHHHHBHHHHHHHTTT----TSTTSSEEEEEETTSCHHHHHHHHHHHH
T ss_pred EEEeechhhhhccchhhhhccccc----cccccccccccccccccccccccccccc
Confidence 7888887777 459999999887 222233 45555 88999999988763
No 27
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=29.89 E-value=1e+02 Score=27.22 Aligned_cols=49 Identities=16% Similarity=0.299 Sum_probs=37.7
Q ss_pred CCeEEEEEecCCCceeeEEEccCCcCcHHHHHHHHHHHHhcCCCCCCceeecCCHHHH
Q 036504 55 EGHVAVLAMDGNDQAKRFIVPLNYLSHPTFMSLLEQAAEEYGFDRGGALTVPCQPSEL 112 (141)
Q Consensus 55 kG~~aVYVg~g~e~~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~~G~L~IPC~~~~F 112 (141)
++.-.||+|+|.- .+|+.+.+.+|++...+.|.+..+-.+++-+++..+
T Consensus 101 ~~v~~I~fgGGtP---------~~l~~~~l~~ll~~i~~~~~~~~~~eitie~np~~l 149 (455)
T TIGR00538 101 RHVSQLHWGGGTP---------TYLSPEQISRLMKLIRENFPFNADAEISIEIDPRYI 149 (455)
T ss_pred CceEEEEECCCCc---------CCCCHHHHHHHHHHHHHhCCCCCCCeEEEEeccCcC
Confidence 4677899987643 678999999999999999877555567777766544
No 28
>cd01406 SIR2-like Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation.
Probab=29.46 E-value=67 Score=25.55 Aligned_cols=36 Identities=25% Similarity=0.502 Sum_probs=27.6
Q ss_pred CeEEEEEecCCCceeeEEEccCCcCcHHHHHHHHHHHHhcCCCCC
Q 036504 56 GHVAVLAMDGNDQAKRFIVPLNYLSHPTFMSLLEQAAEEYGFDRG 100 (141)
Q Consensus 56 G~~aVYVg~g~e~~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~~ 100 (141)
|++++++|-|= ... .+-|.+.+|++...+++|.+.+
T Consensus 1 g~lvlFiGAG~--------S~~-~glP~W~~Ll~~l~~~~~~~~~ 36 (242)
T cd01406 1 GRVVIFVGAGV--------SVS-SGLPDWKTLLDEIASELGLEID 36 (242)
T ss_pred CCEEEEecCcc--------ccc-cCCCChHHHHHHHHHHcCCccc
Confidence 67899998661 111 5789999999999999987544
No 29
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=29.03 E-value=68 Score=27.32 Aligned_cols=47 Identities=19% Similarity=0.263 Sum_probs=36.1
Q ss_pred eEEEEEecCCCceeeEEEccCCcCcHHHHHHHHHHHHhcCCCCCCceeecCCHHHH
Q 036504 57 HVAVLAMDGNDQAKRFIVPLNYLSHPTFMSLLEQAAEEYGFDRGGALTVPCQPSEL 112 (141)
Q Consensus 57 ~~aVYVg~g~e~~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~~G~L~IPC~~~~F 112 (141)
.-.||+|+|.- ..|+.+.+.+|++...+.|+...+-.+++-+.+..+
T Consensus 52 v~~i~~GGGtP---------s~l~~~~l~~ll~~i~~~~~~~~~~eitie~np~~l 98 (360)
T TIGR00539 52 LESIFIGGGTP---------NTLSVEAFERLFESIYQHASLSDDCEITTEANPELI 98 (360)
T ss_pred ccEEEeCCCch---------hcCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCCC
Confidence 45799987643 678899999999999888877666678887766554
No 30
>PF12058 DUF3539: Protein of unknown function (DUF3539); InterPro: IPR021926 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved NHP sequence motif. ; PDB: 3N5B_B 2XKO_C 2XG8_F.
Probab=28.69 E-value=10 Score=27.63 Aligned_cols=11 Identities=64% Similarity=1.050 Sum_probs=8.2
Q ss_pred CCcCcHHHHHH
Q 036504 77 NYLSHPTFMSL 87 (141)
Q Consensus 77 ~yL~hP~F~~L 87 (141)
.|||||.|.-|
T Consensus 4 ~YLNHPtFGlL 14 (88)
T PF12058_consen 4 TYLNHPTFGLL 14 (88)
T ss_dssp -EEEETTTEEE
T ss_pred ccccCCccchh
Confidence 68999998654
No 31
>PF07104 DUF1366: Protein of unknown function (DUF1366); InterPro: IPR009796 This entry is represented by Streptococcus phage 7201, Orf40. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Streptococcus thermophilus bacteriophage proteins of around 130 residues in length. One of the sequences in this family, from phage Sfi11 (O80186 from SWISSPROT) is known as Gp149. The function of this family is unknown.
Probab=28.59 E-value=1e+02 Score=23.20 Aligned_cols=42 Identities=17% Similarity=0.143 Sum_probs=30.3
Q ss_pred CCCCCeEEEEEecCCCceeeEEEccCCcCcHHHHHHHHHHHHhc
Q 036504 52 DVKEGHVAVLAMDGNDQAKRFIVPLNYLSHPTFMSLLEQAAEEY 95 (141)
Q Consensus 52 ~v~kG~~aVYVg~g~e~~~RfvVp~~yL~hP~F~~LL~~aeeEf 95 (141)
....|.-++.+++++- .--+.+|.++.+.+ +.+||++|+|.|
T Consensus 15 Gsv~~T~ViL~~~dGa-~ip~~L~~D~~~ks-~~ELi~~ale~i 56 (116)
T PF07104_consen 15 GSVSKTKVILTNDDGA-YIPVFLPGDKIDKS-NTELIELALEMI 56 (116)
T ss_pred CCeeeeEEEEEcCCCc-EEEeeCChhhhcCC-HHHHHHHHHHHH
Confidence 3455666666665543 67777888877765 689999999876
No 32
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=28.36 E-value=80 Score=27.01 Aligned_cols=47 Identities=17% Similarity=0.369 Sum_probs=36.1
Q ss_pred eEEEEEecCCCceeeEEEccCCcCcHHHHHHHHHHHHhcCCCCCCceeecCCHHHH
Q 036504 57 HVAVLAMDGNDQAKRFIVPLNYLSHPTFMSLLEQAAEEYGFDRGGALTVPCQPSEL 112 (141)
Q Consensus 57 ~~aVYVg~g~e~~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~~G~L~IPC~~~~F 112 (141)
.-.||.|+|.- .+|+.+.+.+|++...+.|+...+-.+++-|.+..+
T Consensus 60 i~~i~~GGGTP---------s~l~~~~l~~ll~~i~~~~~~~~~~e~t~e~~p~~i 106 (375)
T PRK05628 60 VSTVFVGGGTP---------SLLGAEGLARVLDAVRDTFGLAPGAEVTTEANPEST 106 (375)
T ss_pred eeEEEeCCCcc---------ccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCCC
Confidence 45789987633 678899999999999999988655567776666544
No 33
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=27.47 E-value=85 Score=27.56 Aligned_cols=50 Identities=16% Similarity=0.302 Sum_probs=39.0
Q ss_pred eeeEEEccCCcCc--HHHHHHHHH---HHHhcCCCCCCceeecCCHHHHHHHHHHhcC
Q 036504 69 AKRFIVPLNYLSH--PTFMSLLEQ---AAEEYGFDRGGALTVPCQPSELEKILAEQGD 121 (141)
Q Consensus 69 ~~RfvVp~~yL~h--P~F~~LL~~---aeeEfG~~~~G~L~IPC~~~~Fe~lL~~~~~ 121 (141)
.+=|..|.+.|-+ .-|+++|.. ..++.. +=.|.+-||+..|+-|+.-...
T Consensus 13 ~rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~---~idisVhCDv~iF~WLm~yv~~ 67 (317)
T PF11822_consen 13 KRDFTCPRDLLVSEMRYFAEYLSRYINDSQRWE---EIDISVHCDVHIFEWLMRYVKG 67 (317)
T ss_pred ceeeeccHHHHHHhhHHHHHHHhhcccccCcCC---CcceEEecChhHHHHHHHHhhc
Confidence 6889999998855 569999976 444432 4569999999999999988765
No 34
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=27.39 E-value=2.5e+02 Score=24.75 Aligned_cols=68 Identities=16% Similarity=0.266 Sum_probs=39.6
Q ss_pred CCCCCeEEEEEecCCC-----------------ceeeEEEccCC--cCcHHHHHHHHHHHHhcCCCCCCceeecCCHHHH
Q 036504 52 DVKEGHVAVLAMDGND-----------------QAKRFIVPLNY--LSHPTFMSLLEQAAEEYGFDRGGALTVPCQPSEL 112 (141)
Q Consensus 52 ~v~kG~~aVYVg~g~e-----------------~~~RfvVp~~y--L~hP~F~~LL~~aeeEfG~~~~G~L~IPC~~~~F 112 (141)
..+.+-+.|.||.+++ +.-|+.||+.| =|.--.++..+.+.+-||-+.=-+|+=-=.-++.
T Consensus 141 ~~~~~~~tIlvGNSgd~SN~Hie~L~~l~~~~~~~v~ii~PlsYp~gn~~Yi~~V~~~~~~lF~~~~~~~L~e~l~f~eY 220 (322)
T PRK02797 141 RQRAGKMTILVGNSGDRSNRHIEALRALHQQFGDNVKIIVPMGYPANNQAYIEEVRQAGLALFGAENFQILTEKLPFDDY 220 (322)
T ss_pred ccCCCceEEEEeCCCCCcccHHHHHHHHHHHhCCCeEEEEECCcCCCCHHHHHHHHHHHHHhcCcccEEehhhhCCHHHH
Confidence 3466789999986432 13599999999 4444555555556666773322233323333444
Q ss_pred HHHHHHh
Q 036504 113 EKILAEQ 119 (141)
Q Consensus 113 e~lL~~~ 119 (141)
-.+|..+
T Consensus 221 l~lL~~~ 227 (322)
T PRK02797 221 LALLRQC 227 (322)
T ss_pred HHHHHhC
Confidence 4555554
No 35
>PF14317 YcxB: YcxB-like protein
Probab=26.61 E-value=1.1e+02 Score=18.38 Aligned_cols=34 Identities=15% Similarity=0.108 Sum_probs=25.1
Q ss_pred CCCCeEEEEEecCCCceeeEEEccCCcCcHHHHHHHHH
Q 036504 53 VKEGHVAVLAMDGNDQAKRFIVPLNYLSHPTFMSLLEQ 90 (141)
Q Consensus 53 v~kG~~aVYVg~g~e~~~RfvVp~~yL~hP~F~~LL~~ 90 (141)
..+.++.+|+++ ..-++||-+.++.--..+|.+.
T Consensus 27 e~~~~~~l~~~~----~~~~~iPk~~f~~~e~~~f~~~ 60 (62)
T PF14317_consen 27 ETKDYFYLYLGK----NQAFIIPKRAFSEEEKEEFREF 60 (62)
T ss_pred EeCCEEEEEECC----CeEEEEEHHHCCHhHHHHHHHH
Confidence 367788889853 5899999999996555555543
No 36
>PF06290 PsiB: Plasmid SOS inhibition protein (PsiB); InterPro: IPR009385 This family consists of several plasmid SOS inhibition protein (PsiB) sequences [].; PDB: 3NCT_B.
Probab=26.35 E-value=2.2e+02 Score=22.38 Aligned_cols=50 Identities=20% Similarity=0.228 Sum_probs=33.5
Q ss_pred CCCcCCCCCeEEEEEecCCCceeeEEEcc-CCcCcHHHHHHHHHHHH--hcCCCC
Q 036504 48 YVPEDVKEGHVAVLAMDGNDQAKRFIVPL-NYLSHPTFMSLLEQAAE--EYGFDR 99 (141)
Q Consensus 48 ~~~~~v~kG~~aVYVg~g~e~~~RfvVp~-~yL~hP~F~~LL~~aee--EfG~~~ 99 (141)
|+|.++..+.++|++..|++ -=.+|.+ +-++-.....+|.+++. .+||..
T Consensus 78 CSpG~~sp~W~~vl~~~~G~--~~~vv~t~~~f~PE~I~h~L~lva~ld~~Gys~ 130 (143)
T PF06290_consen 78 CSPGEVSPYWMLVLVNRGGQ--PFAVVRTQDRFEPETINHTLALVAGLDRDGYSQ 130 (143)
T ss_dssp E-SSSS-SSEEEEEEECCC---SEEEEEEESS--HHHHHHHHHHHHHHHHTT--H
T ss_pred cCCCCcCcceEEEEECCCCc--EEEEEEecCccCHHHHHHHHHHHHhHhhcCCCH
Confidence 57888999999999977654 4445555 77777788999999886 678764
No 37
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=25.86 E-value=96 Score=28.22 Aligned_cols=43 Identities=19% Similarity=0.219 Sum_probs=32.4
Q ss_pred CeEEEEEecCCCceeeEEEccCCcCcHHHHHHHHHHHHhc-CCCCCCceeecC
Q 036504 56 GHVAVLAMDGNDQAKRFIVPLNYLSHPTFMSLLEQAAEEY-GFDRGGALTVPC 107 (141)
Q Consensus 56 G~~aVYVg~g~e~~~RfvVp~~yL~hP~F~~LL~~aeeEf-G~~~~G~L~IPC 107 (141)
+...||.|+|.- ..|+.+.+.+||+...+.| +......+++.|
T Consensus 218 ~v~tIyfGGGTP---------t~L~~~~L~~Ll~~i~~~f~~~~~~~EiTvE~ 261 (488)
T PRK08207 218 KITTIYFGGGTP---------TSLTAEELERLLEEIYENFPDVKNVKEFTVEA 261 (488)
T ss_pred ceeEEEEeCCCc---------cCCCHHHHHHHHHHHHHhccccCCceEEEEEc
Confidence 566788886643 6689999999999999888 654434677766
No 38
>PF02100 ODC_AZ: Ornithine decarboxylase antizyme; InterPro: IPR002993 Ornithine decarboxylase antizyme (ODC-AZ) [] binds to, and destabilises, ornithine decarboxylase (ODC), a key enzyme in polyamine synthesis. ODC is then rapidly degraded. The expression of ODC-AZ requires programmed, ribosomal frameshifting which is modulated according to the cellular concentration of polyamines. High levels of polyamines induce a +1 ribosomal frameshift in the translation of mRNA for the antizyme leading to the expression of a full-length protein. At least two forms of ODC-AZ exist in mammals [] and the protein has been found in Drosophila (protein Gutfeeling).; GO: 0004857 enzyme inhibitor activity, 0008073 ornithine decarboxylase inhibitor activity; PDB: 1ZO0_A.
Probab=25.34 E-value=47 Score=24.34 Aligned_cols=50 Identities=20% Similarity=0.309 Sum_probs=25.5
Q ss_pred eeeEE-EccC---CcCcHHHHHHHHHHHHhcCCCCCCceeecCCHHHHHHHHHHh
Q 036504 69 AKRFI-VPLN---YLSHPTFMSLLEQAAEEYGFDRGGALTVPCQPSELEKILAEQ 119 (141)
Q Consensus 69 ~~Rfv-Vp~~---yL~hP~F~~LL~~aeeEfG~~~~G~L~IPC~~~~Fe~lL~~~ 119 (141)
+.=|+ +|-. -..-..|.+|||.|||.+|.++ -.|.++=+-.....++..+
T Consensus 24 ~~L~V~ip~~~~~~~~K~~lvaLLElAee~L~c~~-vvic~~k~~~d~~~Llr~l 77 (108)
T PF02100_consen 24 RTLFVFIPSSALGQGSKESLVALLELAEEKLGCSH-VVICLDKNRPDRASLLRTL 77 (108)
T ss_dssp TEEEEE-SS---SS--SHHHHHHHHHHHHHH-----EEEEE---SS-HHHHHHHH
T ss_pred CEEEEEECCcccccccHHHHHHHHHHhcCcCCCCE-EEEEEECCchhHHHhhhhc
Confidence 34455 3433 3455789999999999998653 3455554444566666654
No 39
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=23.07 E-value=2.6e+02 Score=19.82 Aligned_cols=48 Identities=19% Similarity=0.258 Sum_probs=33.5
Q ss_pred eeeEEEccCC-cCcHHHHHHHHHHHHhcCCCC-----------CC-ceeecCCHHHHHHHH
Q 036504 69 AKRFIVPLNY-LSHPTFMSLLEQAAEEYGFDR-----------GG-ALTVPCQPSELEKIL 116 (141)
Q Consensus 69 ~~RfvVp~~y-L~hP~F~~LL~~aeeEfG~~~-----------~G-~L~IPC~~~~Fe~lL 116 (141)
.+||-+|..- -.+.-|..|.++-++-|.... +| -++|.|+.++-+-+-
T Consensus 11 ~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~Dedgd~V~l~~D~DL~~a~~ 71 (91)
T cd06398 11 LRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYTDEDGDVVTLVDDNDLTDAIQ 71 (91)
T ss_pred EEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCEEEEccHHHHHHHHH
Confidence 8999999741 114578889888888776543 24 478899887765443
No 40
>PF09906 DUF2135: Uncharacterized protein conserved in bacteria (DUF2135); InterPro: IPR019220 This entry, found in various hypothetical prokaryotic proteins, has no known function.
Probab=23.07 E-value=1.1e+02 Score=19.50 Aligned_cols=19 Identities=32% Similarity=0.852 Sum_probs=12.4
Q ss_pred EEEEEecC--CCceeeEEEcc
Q 036504 58 VAVLAMDG--NDQAKRFIVPL 76 (141)
Q Consensus 58 ~aVYVg~g--~e~~~RfvVp~ 76 (141)
+.+++..| .|++++|+||+
T Consensus 30 l~l~t~eGtp~ek~~~f~v~l 50 (50)
T PF09906_consen 30 LTLITNEGTPNEKQETFVVPL 50 (50)
T ss_pred EEEEECCCCcccceEEEEEeC
Confidence 44444433 56689999985
No 41
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=22.81 E-value=38 Score=30.21 Aligned_cols=25 Identities=20% Similarity=0.299 Sum_probs=17.9
Q ss_pred CcCCCCCeEEEEEec-CCCceeeEEEcc
Q 036504 50 PEDVKEGHVAVLAMD-GNDQAKRFIVPL 76 (141)
Q Consensus 50 ~~~v~kG~~aVYVg~-g~e~~~RfvVp~ 76 (141)
..-+|.|-|++|||- +-| ..|.||+
T Consensus 87 ~I~IP~gSfv~Y~G~d~ie--~~~~vP~ 112 (361)
T COG1759 87 AIFIPHGSFVAYVGYDGIE--NEFEVPM 112 (361)
T ss_pred eEEecCCceEEEecchhhh--hcccCcc
Confidence 456899999999973 222 5677764
No 42
>COG4862 MecA Negative regulator of genetic competence, sporulation and motility [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Cell motility and secretion]
Probab=22.42 E-value=58 Score=27.34 Aligned_cols=28 Identities=18% Similarity=0.340 Sum_probs=24.7
Q ss_pred cCcHHHHHHHHHHHHhcCCCCCCceeec
Q 036504 79 LSHPTFMSLLEQAAEEYGFDRGGALTVP 106 (141)
Q Consensus 79 L~hP~F~~LL~~aeeEfG~~~~G~L~IP 106 (141)
-.+-+|-++++.+..|-+|..+|||.|-
T Consensus 36 k~EE~F~~mMdEl~~ee~F~~~GpL~iq 63 (224)
T COG4862 36 KTEELFYEMMDELNLEEDFKDEGPLWIQ 63 (224)
T ss_pred HHHHHHHHHHHhcCCccccccCCceEEE
Confidence 3578999999999999999999999874
No 43
>TIGR03793 TOMM_pelo TOMM propeptide domain. This model represents a domain that is conserved among a large number of putative thiazole/oxazole-modified microcins (TOMM). Oddly, most of this seqence region appears homologous to nitrile hydratase subunits. This family is expanded especially in Pelotomaculum thermopropionicum SI.
Probab=22.34 E-value=1.4e+02 Score=20.75 Aligned_cols=27 Identities=22% Similarity=0.293 Sum_probs=18.1
Q ss_pred cCcHHHHHHH----HHHHHhcCCCCCCceee
Q 036504 79 LSHPTFMSLL----EQAAEEYGFDRGGALTV 105 (141)
Q Consensus 79 L~hP~F~~LL----~~aeeEfG~~~~G~L~I 105 (141)
-..|.|++.| ..+=+||||.-+..+.|
T Consensus 14 w~Dp~Fr~~Ll~DPraaL~e~G~~~P~~~~i 44 (77)
T TIGR03793 14 WEDEAFKQALLTNPKEALEREGVQVPAEVEV 44 (77)
T ss_pred HcCHHHHHHHHHCHHHHHHHhCCCCCCceEE
Confidence 4578999966 44456889986654443
No 44
>PF08948 DUF1859: Domain of unknown function (DUF1859); InterPro: IPR015043 This entry is represented by Bacteriophage PRD1, P5. This protein has no known function though it is sometimes found in the N terminus of bacteriophage spike proteins []. ; PDB: 1W8X_N.
Probab=22.13 E-value=37 Score=25.78 Aligned_cols=28 Identities=25% Similarity=0.499 Sum_probs=8.6
Q ss_pred CCCeEEEEEecCCCceeeEE----------EccCCcCcHHHH
Q 036504 54 KEGHVAVLAMDGNDQAKRFI----------VPLNYLSHPTFM 85 (141)
Q Consensus 54 ~kG~~aVYVg~g~e~~~Rfv----------Vp~~yL~hP~F~ 85 (141)
..|||+|+|-. +..|+ ||+-|||.|+-|
T Consensus 86 ~QGYfPlL~~~----~~KFv~~~~~~GKks~P~~FlNF~IA~ 123 (126)
T PF08948_consen 86 KQGYFPLLVPG----RAKFVVRHTGSGKKSVPMFFLNFTIAQ 123 (126)
T ss_dssp --SS--EEE------SSSSEEEEEEEESS----S--------
T ss_pred Ccccceeeccc----hhhhhhhhccCCCcceeeEEEeceeee
Confidence 68999999952 45665 688888888754
No 45
>PF13421 Band_7_1: SPFH domain-Band 7 family
Probab=22.07 E-value=1.6e+02 Score=23.75 Aligned_cols=45 Identities=24% Similarity=0.388 Sum_probs=32.9
Q ss_pred CcCCCCCeEEEEEecCCC----ceeeEEEccCCcCcHHHHHHHHHHHHhcCCCC
Q 036504 50 PEDVKEGHVAVLAMDGND----QAKRFIVPLNYLSHPTFMSLLEQAAEEYGFDR 99 (141)
Q Consensus 50 ~~~v~kG~~aVYVg~g~e----~~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~ 99 (141)
-..|++|..||+|-+|.- +.-||.+-.. |.|++..|... -||+..
T Consensus 16 ~LiV~egQ~Avfv~~G~i~d~~~pG~y~l~T~--n~P~l~~l~~~---~~Gg~s 64 (211)
T PF13421_consen 16 QLIVREGQCAVFVNDGKIADVFGPGRYTLDTD--NIPILSTLKNW---KFGGES 64 (211)
T ss_pred EEEECCCCEEEEEECCEEEEEecCceEEEecC--CchHHHHHhhh---ccCCCC
Confidence 456899999999977621 1578887764 89999988754 377654
No 46
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=22.03 E-value=1.8e+02 Score=26.64 Aligned_cols=30 Identities=33% Similarity=0.719 Sum_probs=22.9
Q ss_pred EEEccCCcCcHHHHHHHHHHH-H---hcCCCCCC
Q 036504 72 FIVPLNYLSHPTFMSLLEQAA-E---EYGFDRGG 101 (141)
Q Consensus 72 fvVp~~yL~hP~F~~LL~~ae-e---EfG~~~~G 101 (141)
|+=.++....|...+|.|+-- | ||||+.+.
T Consensus 176 fiNKvD~V~d~e~leLVEmE~RElLse~gf~Gd~ 209 (449)
T KOG0460|consen 176 FINKVDLVDDPEMLELVEMEIRELLSEFGFDGDN 209 (449)
T ss_pred EEecccccCCHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 455667788999999998743 3 89998763
No 47
>cd06399 PB1_P40 The PB1 domain is essential part of the p40 adaptor protein which plays an important role in activating phagocyte NADPH oxidase during phagocytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes , such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domain of p40 represents a type I PB1 domain which interacts with the PB1 domain of oxidase activator p67 w
Probab=20.84 E-value=92 Score=22.82 Aligned_cols=27 Identities=26% Similarity=0.374 Sum_probs=21.9
Q ss_pred eeEEEccCCcCcHHHHHHHHHHHHhcC
Q 036504 70 KRFIVPLNYLSHPTFMSLLEQAAEEYG 96 (141)
Q Consensus 70 ~RfvVp~~yL~hP~F~~LL~~aeeEfG 96 (141)
+=..|.-+.-..|.|.+||.....+|+
T Consensus 16 rdi~vee~l~~~P~~kdLl~lmr~~f~ 42 (92)
T cd06399 16 RDIAVEEDLSSTPLLKDLLELTRREFQ 42 (92)
T ss_pred cceEeecccccCccHHHHHHHHHHHhc
Confidence 334455578899999999999999986
No 48
>PF05419 GUN4: GUN4-like ; InterPro: IPR008629 In Arabidopsis, GUN4 is required for the functioning of the plastid mediated repression of nuclear transcription that is involved in controlling the levels of magnesium- protoporphyrin IX. GUN4 binds the product and substrate of Mg-chelatase, an enzyme that produces Mg-Proto, and activates Mg-chelatase. GUN4 is thought to participate in plastid-to-nucleus signalling by regulating magnesium-protoporphyrin IX synthesis or trafficking.; PDB: 1Y6I_A 1Z3X_A 1Z3Y_A.
Probab=20.52 E-value=11 Score=28.82 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=12.4
Q ss_pred CcCCCCCeEEEEEecCCCceeeEEEccCCcCcHHHH
Q 036504 50 PEDVKEGHVAVLAMDGNDQAKRFIVPLNYLSHPTFM 85 (141)
Q Consensus 50 ~~~v~kG~~aVYVg~g~e~~~RfvVp~~yL~hP~F~ 85 (141)
+..+|+||+|.+-.-+ .+++||.|+
T Consensus 108 ~l~AP~GHLP~~~~~~-----------~~~~~~~~~ 132 (132)
T PF05419_consen 108 SLNAPKGHLPAVWWLS-----------SLLSHPAWQ 132 (132)
T ss_dssp STTS-TT--S-THHHH-----------HHHTSCHHH
T ss_pred cCCCCCCCCccHHHHH-----------HHHcCCCcC
Confidence 3458999999542211 567777764
No 49
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=20.12 E-value=3.4e+02 Score=19.47 Aligned_cols=47 Identities=13% Similarity=0.138 Sum_probs=31.0
Q ss_pred EEEEecCCCceeeEEEccCCcCcHHHHHHHHHHHHhcCCCC-------------CCceeecCCHHHH
Q 036504 59 AVLAMDGNDQAKRFIVPLNYLSHPTFMSLLEQAAEEYGFDR-------------GGALTVPCQPSEL 112 (141)
Q Consensus 59 aVYVg~g~e~~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~-------------~G~L~IPC~~~~F 112 (141)
.=||| +| .+-..|+-+ -.|.+|..+..+.++... ++-+.|.||.++-
T Consensus 17 l~Y~G--G~-tr~i~V~r~----~s~~el~~kl~~~~~~~~~~~lky~Lp~edld~Lisv~~DeDl~ 76 (97)
T cd06410 17 LRYVG--GE-TRIVSVDRS----ISFKELVSKLSELFGAGVVVTLKYQLPDEDLDALISVSNDEDLK 76 (97)
T ss_pred EEEcC--Cc-eEEEEEcCC----CCHHHHHHHHHHHhCCCCceEEEEEcCCCCcceeEEecCcHHHH
Confidence 35885 33 566777766 367778888777776554 3456788887543
Done!