Query 036504
Match_columns 141
No_of_seqs 156 out of 625
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 03:48:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036504.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036504hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vkp_A BTB/POZ domain-containi 62.4 11 0.00038 24.7 4.3 58 59-121 12-72 (109)
2 1und_A Advillin, P92; actin bi 52.6 3 0.0001 24.7 0.1 19 77-95 1-19 (37)
3 3drz_A BTB/POZ domain-containi 41.3 35 0.0012 23.3 4.2 61 56-122 6-71 (107)
4 2al3_A TUG long isoform; TUG U 39.8 26 0.00089 24.3 3.3 30 69-100 19-48 (90)
5 1y74_B MLIN-2/CASK, peripheral 37.5 13 0.00044 22.4 1.2 20 77-96 26-49 (50)
6 3nct_A Protein PSIB; DNA bindi 36.9 85 0.0029 23.6 5.9 51 48-99 78-130 (144)
7 1vd2_A Protein kinase C, IOTA 33.9 1.1E+02 0.0038 20.8 6.1 32 69-104 17-48 (89)
8 2xko_C PIPX, global nitrogen r 30.7 5.9 0.0002 27.8 -1.3 11 77-87 5-15 (89)
9 1yu8_X Villin; alpha helix, 3- 28.4 12 0.0004 24.8 -0.1 19 77-95 31-49 (67)
10 1ujs_A Actin-binding LIM prote 26.5 14 0.00047 25.7 0.0 20 77-96 46-65 (88)
11 2vpk_A Myoneurin; transcriptio 26.0 64 0.0022 21.2 3.4 45 70-121 32-81 (116)
12 1qzp_A Dematin; villin headpie 25.4 10 0.00035 25.0 -0.8 19 77-95 32-50 (68)
13 2lkt_A Retinoic acid receptor 23.5 35 0.0012 23.7 1.7 9 57-65 23-31 (125)
14 2k6m_S Supervillin; SVHP, HP, 23.4 13 0.00044 24.5 -0.6 20 77-96 31-50 (67)
15 1w8x_N Protein P31, protein C, 22.3 25 0.00084 25.7 0.7 28 54-85 86-123 (126)
16 3ga1_A Nucleus accumbens-assoc 22.3 94 0.0032 20.9 3.7 44 70-120 43-90 (129)
17 2lna_A AFG3-like protein 2; st 22.2 1.2E+02 0.004 20.7 4.2 49 53-101 39-87 (99)
18 1r29_A B-cell lymphoma 6 prote 21.5 74 0.0025 21.3 3.0 48 70-121 39-90 (127)
19 1s1g_A Potassium voltage-gated 21.4 29 0.00099 24.8 0.9 62 54-122 11-74 (124)
20 3ezo_A Malonyl COA-acyl carrie 21.0 55 0.0019 26.2 2.6 41 55-98 9-49 (318)
21 2c2n_A Malonyl COA-acyl carrie 20.8 54 0.0018 26.5 2.5 41 55-98 25-65 (339)
22 3n5b_B ASR0485 protein; PII, P 20.5 12 0.00041 27.2 -1.3 12 77-88 28-39 (112)
23 3qli_A Coenzyme A transferase; 20.1 57 0.0019 28.4 2.6 46 51-97 402-454 (455)
No 1
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=62.39 E-value=11 Score=24.68 Aligned_cols=58 Identities=10% Similarity=0.163 Sum_probs=39.4
Q ss_pred EEEEecCCCceeeEEEccCCc--CcHHHHHHHHHHHHhcCCCCCCceeec-CCHHHHHHHHHHhcC
Q 036504 59 AVLAMDGNDQAKRFIVPLNYL--SHPTFMSLLEQAAEEYGFDRGGALTVP-CQPSELEKILAEQGD 121 (141)
Q Consensus 59 aVYVg~g~e~~~RfvVp~~yL--~hP~F~~LL~~aeeEfG~~~~G~L~IP-C~~~~Fe~lL~~~~~ 121 (141)
.+.|+++++ .++|-+.-..| ..|.|+.++...-.|- . ..|.+| .+...|+.+|.-+-.
T Consensus 12 ~l~v~~~~~-~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~---~-~~i~l~~~~~~~f~~~l~~iYt 72 (109)
T 2vkp_A 12 HFVVGPPGA-TRTVPAHKYVLAVGSSVFYAMFYGDLAEV---K-SEIHIPDVEPAAFLILLKYMYS 72 (109)
T ss_dssp EEEESSTTS-CEEEEECHHHHHHHCHHHHHHHC---------C-CEEEETTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCC-cEEEEeeHHHHHHcCHHHHHHhcCCcccC---C-CeEEeCCCCHHHHHHHHHHHcC
Confidence 455654333 58898888887 5899999997543332 2 678887 689999999987643
No 2
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=52.65 E-value=3 Score=24.66 Aligned_cols=19 Identities=26% Similarity=0.558 Sum_probs=17.0
Q ss_pred CCcCcHHHHHHHHHHHHhc
Q 036504 77 NYLSHPTFMSLLEQAAEEY 95 (141)
Q Consensus 77 ~yL~hP~F~~LL~~aeeEf 95 (141)
.||+.-.|++++.|+.+||
T Consensus 1 ~yLsd~dF~~vFgmsr~eF 19 (37)
T 1und_A 1 XYLSEQDFVSVFGITRGQF 19 (37)
T ss_dssp -CCCHHHHHHHHSSCHHHH
T ss_pred CCCCHHHHHHHHCcCHHHH
Confidence 4899999999999999997
No 3
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=41.29 E-value=35 Score=23.26 Aligned_cols=61 Identities=18% Similarity=0.240 Sum_probs=42.7
Q ss_pred CeEEEEEecCCCceeeEEEccCCcC-cH--HHHHHHHHHHHhcC--CCCCCceeecCCHHHHHHHHHHhcCC
Q 036504 56 GHVAVLAMDGNDQAKRFIVPLNYLS-HP--TFMSLLEQAAEEYG--FDRGGALTVPCQPSELEKILAEQGDD 122 (141)
Q Consensus 56 G~~aVYVg~g~e~~~RfvVp~~yL~-hP--~F~~LL~~aeeEfG--~~~~G~L~IPC~~~~Fe~lL~~~~~~ 122 (141)
..+.+.|| | .+|.+..+-|. +| .|..|.... .++. .+.+|.+-|-.+...|++||.-++.+
T Consensus 6 ~~v~LNVG-G----~~f~t~~~TL~~~p~s~L~~~~~~~-~~~~~~~d~~~~~fiDRdp~~F~~IL~~lr~g 71 (107)
T 3drz_A 6 KWVRLNVG-G----TYFLTTRQTLCRDPKSFLYRLCQAD-PDLDSDKDETGAYLIDRDPTYFGPVLNYLRHG 71 (107)
T ss_dssp CEEEEEET-T----EEEEEEHHHHTSSTTSHHHHHHTTC-GGGGGGBCTTSCEEECSCHHHHHHHHHHHHHS
T ss_pred CEEEEEEC-C----EEEEECHHHHhcCCCcchhHHHhcC-CCCCcCCCCCceEEecCChHHHHHHHHHhCCC
Confidence 45677885 3 89999887765 34 566664321 1232 33568999999999999999988764
No 4
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=39.84 E-value=26 Score=24.33 Aligned_cols=30 Identities=17% Similarity=0.411 Sum_probs=23.6
Q ss_pred eeeEEEccCCcCcHHHHHHHHHHHHhcCCCCC
Q 036504 69 AKRFIVPLNYLSHPTFMSLLEQAAEEYGFDRG 100 (141)
Q Consensus 69 ~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~~ 100 (141)
-+|+.|++. -.-.+.++|++|=+.|||+.+
T Consensus 19 ~rr~~VKvt--p~t~L~~VL~eaC~K~gl~~~ 48 (90)
T 2al3_A 19 GRRHTVKVT--PSTVLLQVLEDTCRRQDFNPS 48 (90)
T ss_dssp SCEEEECCC--TTSBHHHHHHHHHHHTTCCGG
T ss_pred CcEEEEEEC--CCCCHHHHHHHHHHHhCCChh
Confidence 489999984 334678899999999999753
No 5
>1y74_B MLIN-2/CASK, peripheral plasma membrane protein CASK; L27 domain, scaffold protein, protein assembly, cell polarity, transport protein; NMR {Mus musculus} SCOP: a.194.1.1 PDB: 1zl8_B
Probab=37.47 E-value=13 Score=22.43 Aligned_cols=20 Identities=45% Similarity=0.762 Sum_probs=15.6
Q ss_pred CCcCcHHHHHHHH----HHHHhcC
Q 036504 77 NYLSHPTFMSLLE----QAAEEYG 96 (141)
Q Consensus 77 ~yL~hP~F~~LL~----~aeeEfG 96 (141)
..|+.|-||.||+ -|.++||
T Consensus 26 ~lL~~PHfqaLl~ahD~Va~~~y~ 49 (50)
T 1y74_B 26 RILTQPHFMALLQTHDVVAHEVYS 49 (50)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHcCHHHHHHHHHHHHHHHHHhc
Confidence 5689999999995 3666764
No 6
>3nct_A Protein PSIB; DNA binding protein, chaperone; 2.20A {Escherichia coli}
Probab=36.92 E-value=85 Score=23.61 Aligned_cols=51 Identities=22% Similarity=0.240 Sum_probs=41.4
Q ss_pred CCCcCCCCCeEEEEEecCCCceeeEEEccCCcCcHHHHHHHHHHHH--hcCCCC
Q 036504 48 YVPEDVKEGHVAVLAMDGNDQAKRFIVPLNYLSHPTFMSLLEQAAE--EYGFDR 99 (141)
Q Consensus 48 ~~~~~v~kG~~aVYVg~g~e~~~RfvVp~~yL~hP~F~~LL~~aee--EfG~~~ 99 (141)
|+|.++..+.++|++-.|++ .=+.+--.+-++-......|..+++ .+||.+
T Consensus 78 CSpG~~sP~W~~Vl~~~gG~-pfavv~~~~~~~Pe~Inh~L~l~a~ld~~Gys~ 130 (144)
T 3nct_A 78 CSPGDVSQVWVLVLVNAGGE-PFAVVQVQRRFASEAVSHSLALAASLDTQGYSV 130 (144)
T ss_dssp ECSSSSCSSEEEEEEEGGGC-SEEEEEEESSCCHHHHHHHHHHHHHHHHTTCCH
T ss_pred eCCCCCCcceEEEEEcCCCc-EEEEEEecCccCHHHHHHHHHHHHHHhhcCCcH
Confidence 67999999999999987766 6677767777787888899998885 678864
No 7
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=33.87 E-value=1.1e+02 Score=20.80 Aligned_cols=32 Identities=16% Similarity=0.118 Sum_probs=25.0
Q ss_pred eeeEEEccCCcCcHHHHHHHHHHHHhcCCCCCCcee
Q 036504 69 AKRFIVPLNYLSHPTFMSLLEQAAEEYGFDRGGALT 104 (141)
Q Consensus 69 ~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~~G~L~ 104 (141)
-.|+.||. ...|++|.++-.+-|++..+.+++
T Consensus 17 i~~~~v~~----~i~~~~L~~kv~~~~~~~~~~~f~ 48 (89)
T 1vd2_A 17 IMITHFEP----SISFEGLCNEVRDMCSFDNEQLFT 48 (89)
T ss_dssp EEEEEECT----TCCHHHHHHHHHHHTTCCSSCCEE
T ss_pred EEEEECCC----CCCHHHHHHHHHHHhCCCCCCeEE
Confidence 78999988 468999999999999986444333
No 8
>2xko_C PIPX, global nitrogen regulator; transcription, nitrogen assimilation, CRP/FNR superfamily, 2-oxoglutarate, global nitrogen controller; HET: AKG; 2.25A {Synechococcus elongatus} PDB: 2xg8_D*
Probab=30.67 E-value=5.9 Score=27.85 Aligned_cols=11 Identities=73% Similarity=1.150 Sum_probs=9.0
Q ss_pred CCcCcHHHHHH
Q 036504 77 NYLSHPTFMSL 87 (141)
Q Consensus 77 ~yL~hP~F~~L 87 (141)
.|||||.|.-|
T Consensus 5 ~YLNHPtFGlL 15 (89)
T 2xko_C 5 NYLNHPTFGLL 15 (89)
T ss_dssp CEEEETTTEEE
T ss_pred ccccCCccchh
Confidence 59999998655
No 9
>1yu8_X Villin; alpha helix, 3-10 helix, structural protein; 1.45A {Gallus gallus} SCOP: a.14.1.1 PDB: 1qqv_A 1yu5_X 2rjx_A 2rjy_A 1yu7_X 2rjv_A 2rjw_A 3nkj_A 3myc_A 3mya_A 3mye_X 1unc_A
Probab=28.42 E-value=12 Score=24.80 Aligned_cols=19 Identities=21% Similarity=0.382 Sum_probs=18.2
Q ss_pred CCcCcHHHHHHHHHHHHhc
Q 036504 77 NYLSHPTFMSLLEQAAEEY 95 (141)
Q Consensus 77 ~yL~hP~F~~LL~~aeeEf 95 (141)
.||+.-.|++++.|+.+||
T Consensus 31 ~yLsdedF~~vFgms~~eF 49 (67)
T 1yu8_X 31 NHLSDEDFKAVFGMTRSAF 49 (67)
T ss_dssp GGSCHHHHHHHHSSCHHHH
T ss_pred hcCCHHHHHHHHCcCHHHH
Confidence 8999999999999999997
No 10
>1ujs_A Actin-binding LIM protein homologue; VHP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 2l3x_A
Probab=26.49 E-value=14 Score=25.71 Aligned_cols=20 Identities=20% Similarity=0.379 Sum_probs=18.6
Q ss_pred CCcCcHHHHHHHHHHHHhcC
Q 036504 77 NYLSHPTFMSLLEQAAEEYG 96 (141)
Q Consensus 77 ~yL~hP~F~~LL~~aeeEfG 96 (141)
.||+.-.|++++.|+.+||-
T Consensus 46 ~YLSdedF~~vFgMsr~eF~ 65 (88)
T 1ujs_A 46 RHLSQEEFYQVFGMTISEFD 65 (88)
T ss_dssp GGSCTTHHHHHHSSCHHHHT
T ss_pred hcCCHHHHHHHHCcCHHHHH
Confidence 79999999999999999983
No 11
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=25.95 E-value=64 Score=21.23 Aligned_cols=45 Identities=13% Similarity=0.113 Sum_probs=34.2
Q ss_pred eeEEEccCCc--CcHHHHHHHHHHHHhcCCCCCCceeec---CCHHHHHHHHHHhcC
Q 036504 70 KRFIVPLNYL--SHPTFMSLLEQAAEEYGFDRGGALTVP---CQPSELEKILAEQGD 121 (141)
Q Consensus 70 ~RfvVp~~yL--~hP~F~~LL~~aeeEfG~~~~G~L~IP---C~~~~Fe~lL~~~~~ 121 (141)
++|-+.-..| ..|.|++++... .+..|.|+ .+...|+.+|.-+-.
T Consensus 32 ~~~~aHk~vLaa~S~yF~~~f~~~-------~~~~i~l~~~~~~~~~f~~ll~~~Yt 81 (116)
T 2vpk_A 32 FQFKAHRNVLASFSEYFGAIYRST-------SENNVFLDQSQVKADGFQKLLEFIYT 81 (116)
T ss_dssp EEEEECHHHHHHHCHHHHHHHTTC-------CCSCEECCTTTCCHHHHHHHHHHHHH
T ss_pred EEEeccHHHHhhcCHHHHHHHcCC-------CCCeEEeecCCCCHHHHHHHHHHHcC
Confidence 6777777776 578999988643 35678887 789999999987643
No 12
>1qzp_A Dematin; villin headpiece, actin binding domain, protein binding; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 1zv6_A
Probab=25.38 E-value=10 Score=25.04 Aligned_cols=19 Identities=26% Similarity=0.438 Sum_probs=18.0
Q ss_pred CCcCcHHHHHHHHHHHHhc
Q 036504 77 NYLSHPTFMSLLEQAAEEY 95 (141)
Q Consensus 77 ~yL~hP~F~~LL~~aeeEf 95 (141)
.||+.-.|++++.|+.+||
T Consensus 32 ~yLsdedF~~vFgmsr~eF 50 (68)
T 1qzp_A 32 RHLSAEDFSRVFAMSPEEF 50 (68)
T ss_dssp GGBCHHHHHHHSSSCHHHH
T ss_pred hhCCHHHHHHHHCcCHHHH
Confidence 8999999999999999997
No 13
>2lkt_A Retinoic acid receptor responder protein 3; TIG3, human tumor suppressor II family, NLPC/P60, hydrolase; NMR {Homo sapiens}
Probab=23.47 E-value=35 Score=23.68 Aligned_cols=9 Identities=44% Similarity=0.541 Sum_probs=8.1
Q ss_pred eEEEEEecC
Q 036504 57 HVAVLAMDG 65 (141)
Q Consensus 57 ~~aVYVg~g 65 (141)
|.+||||||
T Consensus 23 H~gIYvGdg 31 (125)
T 2lkt_A 23 HWALYIGDG 31 (125)
T ss_dssp EEEEEEETT
T ss_pred EEEEEeCCC
Confidence 899999986
No 14
>2k6m_S Supervillin; SVHP, HP, headpiece, archvillin, actin capping, actin-binding, alternative splicing, calcium, cytoplasm, cytoskeleton, membrane; NMR {Homo sapiens} PDB: 2k6n_A
Probab=23.37 E-value=13 Score=24.52 Aligned_cols=20 Identities=30% Similarity=0.527 Sum_probs=18.6
Q ss_pred CCcCcHHHHHHHHHHHHhcC
Q 036504 77 NYLSHPTFMSLLEQAAEEYG 96 (141)
Q Consensus 77 ~yL~hP~F~~LL~~aeeEfG 96 (141)
.||+.-.|++++.|+.+||-
T Consensus 31 ~yLsdedF~~vFgmsr~eF~ 50 (67)
T 2k6m_S 31 IYLTDEDFEFALDMTRDEYN 50 (67)
T ss_dssp GGSCHHHHHHHTSSCHHHHT
T ss_pred hhCCHHHHHHHHCcCHHHHH
Confidence 89999999999999999983
No 15
>1w8x_N Protein P31, protein C, GPC; virus, P3 major capsid protein, P30 TAPE measure, P31 penton protein, P16 membrane protein; 4.20A {Enterobacteria phage PRD1} SCOP: i.6.1.1
Probab=22.31 E-value=25 Score=25.68 Aligned_cols=28 Identities=29% Similarity=0.514 Sum_probs=18.2
Q ss_pred CCCeEEEEEecCCCceeeEE----------EccCCcCcHHHH
Q 036504 54 KEGHVAVLAMDGNDQAKRFI----------VPLNYLSHPTFM 85 (141)
Q Consensus 54 ~kG~~aVYVg~g~e~~~Rfv----------Vp~~yL~hP~F~ 85 (141)
..|||+|+|-. +..|+ ||+-|||.|+-|
T Consensus 86 ~QGYfPlL~~~----~~KFv~~~~~~GKks~P~~FlNF~IA~ 123 (126)
T 1w8x_N 86 KQGYFPLLVPG----RAKFVARHLGSGKKSVPLFFLNFTIAQ 123 (126)
T ss_dssp CCSSCCEEECC----SSSSEEEEEEEESSCCCCSCCC-----
T ss_pred Ccccceeeccc----hhhhhhhhhcCCCcceeeEEEeceeee
Confidence 68999999942 55665 688999988754
No 16
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=22.27 E-value=94 Score=20.91 Aligned_cols=44 Identities=23% Similarity=0.378 Sum_probs=34.3
Q ss_pred eeEEEccCCcC--cHHHHHHHHHHHHhcCCCCCCceeec--CCHHHHHHHHHHhc
Q 036504 70 KRFIVPLNYLS--HPTFMSLLEQAAEEYGFDRGGALTVP--CQPSELEKILAEQG 120 (141)
Q Consensus 70 ~RfvVp~~yL~--hP~F~~LL~~aeeEfG~~~~G~L~IP--C~~~~Fe~lL~~~~ 120 (141)
++|-+.-..|. .|.|++++... ....|.|| .+...|+.+|.-+-
T Consensus 43 ~~~~~Hk~vLaa~S~~F~~~f~~~-------~~~~i~l~~~~~~~~f~~ll~~iY 90 (129)
T 3ga1_A 43 HAFKAHRAVLAASSSYFRDLFNNS-------RSAVVELPAAVQPQSFQQILSFCY 90 (129)
T ss_dssp EEEEECHHHHHHHBHHHHHHHHHC-------CCSEEECCTTCCHHHHHHHHHHHH
T ss_pred EEEEehHHHHHHcCHHHHHHHcCC-------CCCEEEECCCCCHHHHHHHHHHHh
Confidence 67777766664 68999998765 46789996 89999999998763
No 17
>2lna_A AFG3-like protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, MPP, hydrolase; NMR {Homo sapiens}
Probab=22.20 E-value=1.2e+02 Score=20.70 Aligned_cols=49 Identities=27% Similarity=0.222 Sum_probs=29.3
Q ss_pred CCCCeEEEEEecCCCceeeEEEccCCcCcHHHHHHHHHHHHhcCCCCCC
Q 036504 53 VKEGHVAVLAMDGNDQAKRFIVPLNYLSHPTFMSLLEQAAEEYGFDRGG 101 (141)
Q Consensus 53 v~kG~~aVYVg~g~e~~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~~G 101 (141)
+.+..+-||+-.+........+-...-+--.|.+-|+.|++|.|...+-
T Consensus 39 ~nk~~v~V~l~~~a~~~~~~~~~f~IGSvd~FE~~Le~aQ~el~i~~~~ 87 (99)
T 2lna_A 39 VNKRFVRVTFTPGKTPVDGQYVWFNIGSVDTFERNLETLQQELGIEGEN 87 (99)
T ss_dssp ETTTEEEEEECTTTSCSTTCCEEEECSCHHHHHHHHHHHHHHTTCCTTT
T ss_pred EcCCEEEEEEcCCCcCCCCceEEEEeCCHHHHHHHHHHHHHHcCCCccc
Confidence 3566777777433110001112233456678999999999999987543
No 18
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=21.51 E-value=74 Score=21.26 Aligned_cols=48 Identities=15% Similarity=0.234 Sum_probs=36.5
Q ss_pred eeEEEccCCc--CcHHHHHHHHHHHHhcCCCCCCceee-c-CCHHHHHHHHHHhcC
Q 036504 70 KRFIVPLNYL--SHPTFMSLLEQAAEEYGFDRGGALTV-P-CQPSELEKILAEQGD 121 (141)
Q Consensus 70 ~RfvVp~~yL--~hP~F~~LL~~aeeEfG~~~~G~L~I-P-C~~~~Fe~lL~~~~~ 121 (141)
++|-+.-..| ..|.|++++...-.| ....|.| + .+...|+.+|.-+-.
T Consensus 39 ~~~~aHk~iLaa~S~~F~~~f~~~~~e----~~~~i~l~~~~~~~~f~~ll~~~Yt 90 (127)
T 1r29_A 39 EQFRAHKTVLMACSGLFYSIFTDQLKR----NLSVINLDPEINPEGFNILLDFMYT 90 (127)
T ss_dssp EEEEECHHHHHHHCHHHHHHHTSTTTT----TCSEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEehHHHHHHHhCHHHHHHhcCCccC----CCCEEEeCCCCCHHHHHHHHHHHcC
Confidence 6777777777 689999999754444 3678999 4 789999999987643
No 19
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=21.36 E-value=29 Score=24.75 Aligned_cols=62 Identities=18% Similarity=0.243 Sum_probs=42.0
Q ss_pred CCCeEEEEEecCCCceeeEEEccCCcC-cHHHHHHHHHHHHhcCCC-CCCceeecCCHHHHHHHHHHhcCC
Q 036504 54 KEGHVAVLAMDGNDQAKRFIVPLNYLS-HPTFMSLLEQAAEEYGFD-RGGALTVPCQPSELEKILAEQGDD 122 (141)
Q Consensus 54 ~kG~~aVYVg~g~e~~~RfvVp~~yL~-hP~F~~LL~~aeeEfG~~-~~G~L~IPC~~~~Fe~lL~~~~~~ 122 (141)
....+.+.|| | .||.+..+-|. .|- .+|..++...-++ .+|.+-|-.+...|+.||.-++.+
T Consensus 11 ~~~~V~LNVG-G----~~F~t~~~TL~~~p~--S~L~~~~~~~~~~~~~g~~FiDRdp~~F~~ILnflR~G 74 (124)
T 1s1g_A 11 QDELIVLNVS-G----RRFQTWRTTLERYPD--TLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLNFYRTG 74 (124)
T ss_dssp -CCEEEEEET-T----EEEEEEHHHHTTSTT--SSTTSSGGGGTBCSSSCSEEECSCHHHHHHHHHHHHHS
T ss_pred CCCEEEEEeC-C----EEEEEeHHHHhcCCC--ceecccCCcccccCCCCcEEEcCChHHHHHHHHHHhcC
Confidence 4456778885 3 89999877653 231 2333343333343 369999999999999999998765
No 20
>3ezo_A Malonyl COA-acyl carrier protein transacylase; ssgcid, acyl-carrier-protein S-malonyltransferase, acyltransferase, transferase; 2.05A {Burkholderia pseudomallei 1710B}
Probab=20.96 E-value=55 Score=26.18 Aligned_cols=41 Identities=15% Similarity=0.178 Sum_probs=27.5
Q ss_pred CCeEEEEEecCCCceeeEEEccCCcCcHHHHHHHHHHHHhcCCC
Q 036504 55 EGHVAVLAMDGNDQAKRFIVPLNYLSHPTFMSLLEQAAEEYGFD 98 (141)
Q Consensus 55 kG~~aVYVg~g~e~~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~ 98 (141)
.-..-|+-|.| -+..-+--+++++|.|++.++++.+.+|++
T Consensus 9 ~~~~f~F~GQG---sQ~~gMg~~L~~~p~fr~~~~~~~~~lg~~ 49 (318)
T 3ezo_A 9 MKFAFVFPGQG---SQSVGMLNAFADVAVVRETLDEASDALGQD 49 (318)
T ss_dssp CCEEEEECCTT---CCCTTTTGGGTTCHHHHHHHHHHHHHHSSC
T ss_pred CCeEEEECCcc---hhhhhHHHHHhhCHHHHHHHHHHHHHhCCC
Confidence 34556777765 222222223339999999999999998875
No 21
>2c2n_A Malonyl COA-acyl carrier protein transacylase; fatty acid synthase, lipid synthesis, mitochondrion transfer transferase; HET: AE4; 1.55A {Homo sapiens}
Probab=20.78 E-value=54 Score=26.50 Aligned_cols=41 Identities=20% Similarity=0.273 Sum_probs=27.9
Q ss_pred CCeEEEEEecCCCceeeEEEccCCcCcHHHHHHHHHHHHhcCCC
Q 036504 55 EGHVAVLAMDGNDQAKRFIVPLNYLSHPTFMSLLEQAAEEYGFD 98 (141)
Q Consensus 55 kG~~aVYVg~g~e~~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~ 98 (141)
.....|+-|.| ....-.--+++.+|.|++.++++.+..|++
T Consensus 25 ~~~afvF~GQG---sQ~~gMg~~L~~~p~fr~~~~~~~~~lg~~ 65 (339)
T 2c2n_A 25 QCSVLLFPGQG---SQVVGMGRGLLNYPRVRELYAAARRVLGYD 65 (339)
T ss_dssp CCEEEEECCTT---CCCTTTTTTTTTSTTHHHHHHHHHHHHSSC
T ss_pred CCEEEEECCCC---ccHHHHHHHHHhChHHHHHHHHHHHHhCCC
Confidence 34566777765 233333334556899999999999988864
No 22
>3n5b_B ASR0485 protein; PII, PIPX, transcription regulator, signal transducer; HET: ADP; 1.90A {Nostoc}
Probab=20.51 E-value=12 Score=27.22 Aligned_cols=12 Identities=42% Similarity=0.836 Sum_probs=9.6
Q ss_pred CCcCcHHHHHHH
Q 036504 77 NYLSHPTFMSLL 88 (141)
Q Consensus 77 ~yL~hP~F~~LL 88 (141)
.|||||.|.-|.
T Consensus 28 ~YLNHPTFGLLy 39 (112)
T 3n5b_B 28 TYINHPTWGLLY 39 (112)
T ss_dssp CEEEETTTEEEE
T ss_pred hhccCCccchhe
Confidence 599999997553
No 23
>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis} PDB: 3qlk_A 3s8d_A
Probab=20.08 E-value=57 Score=28.39 Aligned_cols=46 Identities=22% Similarity=0.314 Sum_probs=29.8
Q ss_pred cCCCCCeEEEEEec-------CCCceeeEEEccCCcCcHHHHHHHHHHHHhcCC
Q 036504 51 EDVKEGHVAVLAMD-------GNDQAKRFIVPLNYLSHPTFMSLLEQAAEEYGF 97 (141)
Q Consensus 51 ~~v~kG~~aVYVg~-------g~e~~~RfvVp~~yL~hP~F~~LL~~aeeEfG~ 97 (141)
...+++++-+.|.+ |.-.++|-.-=++ +.||-||+.|.+.+++.|+
T Consensus 402 vtt~~~~v~~vvTE~Gva~l~G~s~~eRa~~lI~-iAHPdfR~~L~~~A~~~~~ 454 (455)
T 3qli_A 402 VTTPRIDTHYIVTEFGAVNLKGLSSTERALRIIE-LAHPDFRDELTQAAKKMHL 454 (455)
T ss_dssp CSBCTTTCCEEEETTEEEECTTCCHHHHHHHHHT-TSCHHHHHHHHHHHHHTTC
T ss_pred cccCcccccEEEeccEEEECCCCCHHHHHHHHHH-ccCcchHHHHHHHHHHcCC
Confidence 34567766666643 3222444443344 8999999999988888764
Done!