BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036505
(163 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1CFE|A Chain A, P14a, Nmr, 20 Structures
Length = 135
Score = 128 bits (321), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/141 (48%), Positives = 84/141 (59%), Gaps = 7/141 (4%)
Query: 22 HNKPEDYLKAHNEARASVGVGPMSWVYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIAW 81
N P+DYL HN+ARA VGVGPMSW LA + +A G+CNL S E +A
Sbjct: 1 QNSPQDYLAVHNDARAQVGVGPMSWDANLASRAQNYANSRAGDCNLIH---SGAGENLA- 56
Query: 82 SNQGEITATEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNN 141
G+ T V++ + +P Y+Y +N C + G KC YTQVVWRNSVRLGC + RCNN
Sbjct: 57 KGGGDFTGRAAVQLWVSERPSYNYATNQC-VGGKKCRHYTQVVWRNSVRLGCGRARCNNG 115
Query: 142 GTLNFVICNYDPRGNVFGQHP 162
F+ CNYDP GN GQ P
Sbjct: 116 --WWFISCNYDPVGNWIGQRP 134
>pdb|1U53|A Chain A, Novel X-Ray Structure Of Na-Asp-2, A Pr-1 Protein From The
Nematode Parasite Necator Americanus And A Vaccine
Antigen For Human Hookworm Infection
Length = 196
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 30/44 (68%), Gaps = 3/44 (6%)
Query: 120 YTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQHPY 163
YTQ+VW+ +V+LGC E C+N + +V+C Y P GN+ G+ Y
Sbjct: 135 YTQMVWQETVKLGCYVEACSN---MCYVVCQYGPAGNMMGKDIY 175
>pdb|1SMB|A Chain A, Crystal Structure Of Golgi-Associated Pr-1 Protein
Length = 154
Score = 46.2 bits (108), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 9/134 (6%)
Query: 27 DYLKAHNEARASVGVGPMSWVYKLADYSHKHAQKLKGNCNLK-KPQVSK--YSETIAWSN 83
+ LKAHNE R GV P+ L + ++++ L LK P+ S+ E +AW++
Sbjct: 12 EVLKAHNEYRQKHGVPPLKLXKNLNREAQQYSEALASTRILKHSPESSRGQXGENLAWAS 71
Query: 84 QGEITATEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGT 143
+ T E + +YN + +T +VW+N+ ++G K ++ +
Sbjct: 72 YDQ-TGKEVADRWYS--EIKNYNFQQPGFT-SGTGHFTAMVWKNTKKMGVGKASASDGSS 127
Query: 144 LNFVICNYDPRGNV 157
FV+ Y P GNV
Sbjct: 128 --FVVARYFPAGNV 139
>pdb|4AIW|A Chain A, Gapr-1 With Bound Inositol Hexakisphosphate
Length = 154
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 9/134 (6%)
Query: 27 DYLKAHNEARASVGVGPMSWVYKLADYSHKHAQKLKGNCNLK-KPQVSKYS--ETIAWSN 83
+ LKAHNE R GV P+ L + ++++ L LK P+ S+ E +AW++
Sbjct: 12 EVLKAHNEYRQKHGVPPLKLXKNLNREAQQYSEALASTRILKHSPESSRGQCGENLAWAS 71
Query: 84 QGEITATEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGT 143
+ T E + +YN + +T +VW+N+ ++G K ++ +
Sbjct: 72 YDQ-TGKEVADRWYS--EIKNYNFQQPGFT-SGTGHFTAMVWKNTKKMGVGKASASDGSS 127
Query: 144 LNFVICNYDPRGNV 157
FV+ Y P GNV
Sbjct: 128 --FVVARYFPAGNV 139
>pdb|1RC9|A Chain A, Crystal Structure Of Stecrisp, A Member Of Crisp Family
From Trimeresurus Stejnegeri Refined At 1.6 Angstroms
Resolution: Structual Relationship Of The Two Domains
Length = 221
Score = 42.7 bits (99), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 120 YTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQ 160
YTQ+VW S R+GCA C ++ F +C Y P GN G+
Sbjct: 116 YTQIVWYKSYRIGCAAAYCPSSPYSYFFVCQYCPAGNFIGK 156
>pdb|1WVR|A Chain A, Crystal Structure Of A Crisp Family Ca-Channel Blocker
Derived From Snake Venom
Length = 221
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 120 YTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQ 160
YTQ+VW S R GCA C ++ F +C Y P GN+ G+
Sbjct: 116 YTQIVWYKSYRAGCAAAYCPSSKYSYFYVCQYCPAGNIIGK 156
>pdb|3Q2R|A Chain A, Crystal Structure Of Sglipr1 Soaked With Zinc Chloride
pdb|3Q2U|A Chain A, Structure Of Human Glioma Pathogenesis-Related Protein 1
Reveals Unique Loops And Surface Motifs
Length = 205
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 60/149 (40%), Gaps = 21/149 (14%)
Query: 26 EDYLKAHNEARASVGVGP-----MSWVYKLADYSHKHAQ--KLKGNCNLKKPQ-----VS 73
+D ++ HN+ R+ V M+W LA + A + N LK P +
Sbjct: 20 KDCVRIHNKFRSEVKPTASDMLYMTWDPALAQIAKAWASNCQFSHNTRLKPPHKLHPNFT 79
Query: 74 KYSETIAWSNQGEITATEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGC 133
E I + + + + D YD+ + C C YTQVVW +S ++GC
Sbjct: 80 SLGENIWTGSVPIFSVSSAITNWYDEIQDYDFKTRICK---KVCGHYTQVVWADSYKVGC 136
Query: 134 AKERCNNNGTLNFV------ICNYDPRGN 156
A + C + + ICNY P GN
Sbjct: 137 AVQFCPKVSGFDALSNGAHFICNYGPGGN 165
>pdb|2VZN|A Chain A, Crystal Structure Of The Major Allergen From Fire Ant
Venom, Sol I 3
pdb|2VZN|B Chain B, Crystal Structure Of The Major Allergen From Fire Ant
Venom, Sol I 3
Length = 218
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 74/165 (44%), Gaps = 21/165 (12%)
Query: 18 LSSAHNKPEDYLKAHNEARASVGVGP-------MSWVYKLADYSHKHAQKLK---GNC-N 66
+ + HN+ + + E R + G P ++W +LA + + A + C N
Sbjct: 46 IVNKHNELRQRVASGKEMRGTNGPQPPAVKMPNLTWDPELATIAQRWANQCTFEHDACRN 105
Query: 67 LKKPQVSKYSETIAWSNQGEITATEFVKMC------MDGKPLYDYNSNTCALNGTKCAIY 120
+++ V + + S + + T E + + D + + + S+ L K Y
Sbjct: 106 VERFAVGQNIAATSSSGKNKSTPNEMILLWYNEVKDFDNRWISSFPSDDNIL--MKVGHY 163
Query: 121 TQVVWRNSVRLGCAK--ERCNNNGTLNFVICNYDPRGNVFGQHPY 163
TQ+VW + ++GC + + +N T ++++CNY P GNV G Y
Sbjct: 164 TQIVWAKTTKIGCGRIMFKEPDNWTKHYLVCNYGPAGNVLGAPIY 208
>pdb|1XTA|A Chain A, Crystal Structure Of Natrin, A Snake Venom Crisp From
Taiwan Cobra (Naja Atra)
pdb|1XTA|B Chain B, Crystal Structure Of Natrin, A Snake Venom Crisp From
Taiwan Cobra (Naja Atra)
Length = 221
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 61/145 (42%), Gaps = 10/145 (6%)
Query: 24 KPEDYLKAHNEARASVG-----VGPMSWVYKLADYSHKHAQKLKGN---CNLKKPQVSKY 75
K ++ + HN R V + M W + A + + A N NL+ + +
Sbjct: 14 KQKEIVDLHNSLRRRVSPTASNMLKMEWYPEAASNAERWANTCSLNHSPDNLRVLEGIQC 73
Query: 76 SETIAWSNQGEITATEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAK 135
E+I S+ T TE + + D + Y + G+ YTQ+VW + R GCA
Sbjct: 74 GESIYMSSNAR-TWTEIIHLWHDEYKNFVYGVGA-SPPGSVTGHYTQIVWYQTYRAGCAV 131
Query: 136 ERCNNNGTLNFVICNYDPRGNVFGQ 160
C ++ F +C Y P GN G+
Sbjct: 132 SYCPSSAWSYFYVCQYCPSGNFQGK 156
>pdb|1XX5|A Chain A, Crystal Structure Of Natrin From Naja Atra Snake Venom
pdb|1XX5|B Chain B, Crystal Structure Of Natrin From Naja Atra Snake Venom
pdb|1XX5|C Chain C, Crystal Structure Of Natrin From Naja Atra Snake Venom
pdb|2GIZ|A Chain A, Structural And Functional Analysis Of Natrin, A Member Of
Crisp-3 Family Blocks A Variety Of Ion Channels
pdb|2GIZ|B Chain B, Structural And Functional Analysis Of Natrin, A Member Of
Crisp-3 Family Blocks A Variety Of Ion Channels
pdb|3MZ8|A Chain A, Crystal Structure Of Zinc-Bound Natrin From Naja Atra
pdb|3MZ8|B Chain B, Crystal Structure Of Zinc-Bound Natrin From Naja Atra
Length = 221
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 120 YTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQ 160
YTQ+VW + R GCA C ++ F +C Y P GN G+
Sbjct: 116 YTQIVWYQTYRAGCAVSYCPSSAWSYFYVCQYCPSGNFQGK 156
>pdb|3NT8|A Chain A, Crystal Structure Of Na-Asp-1
pdb|3NT8|B Chain B, Crystal Structure Of Na-Asp-1
Length = 424
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 120 YTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQHPY 163
YTQ+ W + +LGCA CN+ F +C Y P GN G Y
Sbjct: 359 YTQMAWDTTYKLGCAVVFCND---FTFGVCQYGPGGNYMGHVIY 399
>pdb|2DDA|A Chain A, Crystal Structure Of Pseudechetoxin From Pseudechis
Australis
pdb|2DDA|B Chain B, Crystal Structure Of Pseudechetoxin From Pseudechis
Australis
pdb|2DDA|C Chain C, Crystal Structure Of Pseudechetoxin From Pseudechis
Australis
pdb|2DDA|D Chain D, Crystal Structure Of Pseudechetoxin From Pseudechis
Australis
Length = 211
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 120 YTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFG 159
YTQVVW S +GCA +C+++ L +C Y P GN+ G
Sbjct: 108 YTQVVWYKSYLIGCASAKCSSSKYL--YVCQYCPAGNIRG 145
>pdb|2DDB|A Chain A, Crystal Structure Of Pseudecin From Pseudechis
Porphyriacus
pdb|2DDB|B Chain B, Crystal Structure Of Pseudecin From Pseudechis
Porphyriacus
pdb|2DDB|C Chain C, Crystal Structure Of Pseudecin From Pseudechis
Porphyriacus
pdb|2DDB|D Chain D, Crystal Structure Of Pseudecin From Pseudechis
Porphyriacus
pdb|2EPF|A Chain A, Crystal Structure Of Zinc-Bound Pseudecin From Pseudechis
Porphyriacus
pdb|2EPF|B Chain B, Crystal Structure Of Zinc-Bound Pseudecin From Pseudechis
Porphyriacus
pdb|2EPF|C Chain C, Crystal Structure Of Zinc-Bound Pseudecin From Pseudechis
Porphyriacus
pdb|2EPF|D Chain D, Crystal Structure Of Zinc-Bound Pseudecin From Pseudechis
Porphyriacus
Length = 210
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 120 YTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFG 159
YTQVVW S +GCA +C+++ L +C Y P GN+ G
Sbjct: 107 YTQVVWYKSHLIGCASAKCSSSKYL--YVCQYCPAGNIRG 144
>pdb|1QNX|A Chain A, Ves V 5, An Allergen From Vespula Vulgaris Venom
Length = 209
Score = 35.4 bits (80), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 90 TEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKER-CNNNGTLNFVI 148
+ VKM D Y+ + K YTQ+VW N+ +GC + ++++
Sbjct: 132 VKLVKMWEDEVKDYNPKKKFSGNDFLKTGHYTQMVWANTKEVGCGSIKYIQEKWHKHYLV 191
Query: 149 CNYDPRGNVFGQHPY 163
CNY P GN + Y
Sbjct: 192 CNYGPSGNFKNEELY 206
>pdb|1N9G|B Chain B, Mitochondrial 2-enoyl Thioester Reductase Etr1p/etr2p
Heterodimer From Candida Tropicalis
pdb|1N9G|D Chain D, Mitochondrial 2-enoyl Thioester Reductase Etr1p/etr2p
Heterodimer From Candida Tropicalis
pdb|1N9G|E Chain E, Mitochondrial 2-enoyl Thioester Reductase Etr1p/etr2p
Heterodimer From Candida Tropicalis
Length = 386
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 61 LKGNCNLKKPQVSKYSETIAWSNQGEITATEFVKMCMDG-KPLYDYNSNTCA 111
LK N LK S ++ IAW +G++T + ++ DG KPL++ + A
Sbjct: 327 LKNNKELK---TSTLNQIIAWYEEGKLTDAKSIETLYDGTKPLHELYQDGVA 375
>pdb|1N9G|A Chain A, Mitochondrial 2-enoyl Thioester Reductase Etr1p/etr2p
Heterodimer From Candida Tropicalis
pdb|1N9G|C Chain C, Mitochondrial 2-enoyl Thioester Reductase Etr1p/etr2p
Heterodimer From Candida Tropicalis
pdb|1N9G|F Chain F, Mitochondrial 2-enoyl Thioester Reductase Etr1p/etr2p
Heterodimer From Candida Tropicalis
Length = 386
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 61 LKGNCNLKKPQVSKYSETIAWSNQGEITATEFVKMCMDG-KPLYDYNSNTCA 111
LK N LK S ++ IAW +G++T + ++ DG KPL++ + A
Sbjct: 327 LKNNKELK---TSTLNQIIAWYEEGKLTDAKSIETLYDGTKPLHELYQDGVA 375
>pdb|1GU7|A Chain A, Enoyl Thioester Reductase From Candida Tropicalis
pdb|1GU7|B Chain B, Enoyl Thioester Reductase From Candida Tropicalis
pdb|1GUF|A Chain A, Enoyl Thioester Reductase From Candida Tropicalis
pdb|1GUF|B Chain B, Enoyl Thioester Reductase From Candida Tropicalis
Length = 364
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 61 LKGNCNLKKPQVSKYSETIAWSNQGEITATEFVKMCMDG-KPLYDYNSNTCA 111
LK N LK S ++ IAW +G++T + ++ DG KPL++ + A
Sbjct: 305 LKNNKELK---TSTLNQIIAWYEEGKLTDAKSIETLYDGTKPLHELYQDGVA 353
>pdb|1H0K|A Chain A, Enoyl Thioester Reductase 2
pdb|1H0K|B Chain B, Enoyl Thioester Reductase 2
Length = 364
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 61 LKGNCNLKKPQVSKYSETIAWSNQGEITATEFVKMCMDG-KPLYDYNSNTCA 111
LK N LK S ++ IAW +G++T + ++ DG KPL++ + A
Sbjct: 305 LKNNKELK---TSTLNQIIAWYEEGKLTDAKSIETLYDGTKPLHELYQDGVA 353
>pdb|1GYR|A Chain A, Mutant Form Of Enoyl Thioester Reductase From Candida
Tropicalis
pdb|1GYR|B Chain B, Mutant Form Of Enoyl Thioester Reductase From Candida
Tropicalis
pdb|1GYR|C Chain C, Mutant Form Of Enoyl Thioester Reductase From Candida
Tropicalis
Length = 364
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 61 LKGNCNLKKPQVSKYSETIAWSNQGEITATEFVKMCMDG-KPLYDYNSNTCA 111
LK N LK S ++ IAW +G++T + ++ DG KPL++ + A
Sbjct: 305 LKNNKELK---TSTLNQIIAWYEEGKLTDAKSIETLYDGTKPLHELYQDGVA 353
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 27.3 bits (59), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 125 WRNSVRLGCAKERCNNNGTLNFVICNYDPR 154
W+ S GC RC GT V+ +DPR
Sbjct: 54 WQESEGQGCPFCRCEIKGTEPIVVDPFDPR 83
>pdb|3MSE|B Chain B, Crystal Structure Of C-Terminal Domain Of Pf110239
Length = 180
Score = 26.2 bits (56), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 11/43 (25%), Positives = 24/43 (55%)
Query: 54 SHKHAQKLKGNCNLKKPQVSKYSETIAWSNQGEITATEFVKMC 96
SH+ + + +KK +++ + + +++G IT TEF+ C
Sbjct: 57 SHREIYTVLASVGIKKWDINRILQALDINDRGNITYTEFMAGC 99
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.131 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,267,363
Number of Sequences: 62578
Number of extensions: 203586
Number of successful extensions: 412
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 387
Number of HSP's gapped (non-prelim): 35
length of query: 163
length of database: 14,973,337
effective HSP length: 91
effective length of query: 72
effective length of database: 9,278,739
effective search space: 668069208
effective search space used: 668069208
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)