Query 036505
Match_columns 163
No_of_seqs 196 out of 1136
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 02:45:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036505.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036505hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05381 SCP_PR-1_like SCP_PR-1 100.0 2.3E-44 5.1E-49 246.0 16.2 134 26-163 2-136 (136)
2 cd05384 SCP_PRY1_like SCP_PRY1 100.0 5.8E-40 1.3E-44 222.4 14.2 129 23-159 1-129 (129)
3 cd05382 SCP_GAPR-1_like SCP_GA 100.0 2.6E-40 5.7E-45 224.7 12.5 130 23-157 1-132 (132)
4 cd05385 SCP_GLIPR-1_like SCP_G 100.0 2.1E-37 4.6E-42 213.5 13.0 125 23-154 1-144 (144)
5 smart00198 SCP SCP / Tpx-1 / A 100.0 1.9E-37 4.1E-42 213.6 12.0 127 24-154 2-144 (144)
6 cd05383 SCP_CRISP SCP_CRISP: S 100.0 4.1E-37 8.9E-42 210.7 12.6 125 24-154 2-138 (138)
7 cd05559 SCP_HrTT-1 SCP_HrTT-1: 100.0 4E-36 8.6E-41 205.3 11.9 123 25-152 1-136 (136)
8 cd00168 SCP SCP: SCP-like extr 100.0 1.8E-35 3.9E-40 198.5 12.2 118 25-152 1-122 (122)
9 KOG3017 Defense-related protei 100.0 1E-34 2.2E-39 213.7 7.7 137 23-163 40-198 (225)
10 cd05380 SCP_euk SCP_euk: SCP-l 100.0 6.1E-34 1.3E-38 195.7 9.6 123 25-152 1-144 (144)
11 PF00188 CAP: Cysteine-rich se 99.9 3.3E-23 7.1E-28 136.7 8.9 119 29-151 1-124 (124)
12 TIGR02909 spore_YkwD uncharact 99.9 4.5E-21 9.9E-26 129.4 11.3 107 23-151 3-125 (127)
13 cd05379 SCP_bacterial SCP_bact 99.7 2.9E-17 6.2E-22 109.4 10.5 104 26-151 2-121 (122)
14 COG2340 Uncharacterized protei 99.4 2.5E-12 5.4E-17 93.5 8.7 101 21-140 77-193 (207)
15 PF11054 Surface_antigen: Spor 80.3 22 0.00048 26.6 9.7 133 25-163 35-218 (254)
16 PF12273 RCR: Chitin synthesis 72.4 7.6 0.00016 26.0 3.9 23 29-51 19-41 (130)
17 COG2143 Thioredoxin-related pr 68.1 8.9 0.00019 26.9 3.5 39 1-39 1-39 (182)
18 PF02402 Lysis_col: Lysis prot 66.4 2.5 5.3E-05 22.7 0.4 22 1-22 1-22 (46)
19 PF07172 GRP: Glycine rich pro 65.3 5.2 0.00011 25.4 1.8 8 1-8 1-8 (95)
20 PF13956 Ibs_toxin: Toxin Ibs, 61.7 5.6 0.00012 17.0 1.0 10 1-10 1-10 (19)
21 PF15240 Pro-rich: Proline-ric 61.3 3.7 7.9E-05 29.2 0.7 17 7-23 2-18 (179)
22 COG3026 RseB Negative regulato 54.0 26 0.00055 27.1 4.1 37 4-40 6-42 (320)
23 PF13677 MotB_plug: Membrane M 53.6 29 0.00063 19.7 3.4 27 11-37 29-55 (58)
24 PF08194 DIM: DIM protein; In 50.4 24 0.00053 18.1 2.4 16 1-16 1-16 (36)
25 KOG4439 RNA polymerase II tran 47.8 20 0.00044 31.3 3.0 43 19-61 779-843 (901)
26 PF04648 MF_alpha: Yeast matin 45.6 12 0.00026 14.6 0.7 6 158-163 8-13 (13)
27 KOG3017 Defense-related protei 43.1 22 0.00048 25.8 2.3 22 19-40 25-46 (225)
28 PRK10598 lipoprotein; Provisio 41.7 35 0.00076 24.5 3.1 21 23-43 30-50 (186)
29 PF03207 OspD: Borrelia outer 40.0 58 0.0013 23.0 3.9 14 25-38 53-66 (254)
30 TIGR03044 PS_II_psb27 photosys 38.6 92 0.002 21.2 4.5 23 23-45 36-58 (135)
31 PF13605 DUF4141: Domain of un 37.3 60 0.0013 18.4 2.9 30 7-36 6-42 (55)
32 PF07312 DUF1459: Protein of u 35.4 37 0.0008 20.7 2.0 16 1-16 1-16 (84)
33 TIGR02052 MerP mercuric transp 34.0 29 0.00063 20.4 1.5 20 1-20 1-20 (92)
34 PF14060 DUF4252: Domain of un 33.8 90 0.002 21.1 4.1 28 30-57 26-53 (155)
35 PF03295 Pox_TAA1: Poxvirus tr 33.7 48 0.001 19.1 2.2 19 23-41 24-42 (63)
36 PF15284 PAGK: Phage-encoded v 33.0 37 0.0008 19.6 1.7 11 1-11 1-11 (61)
37 PF11336 DUF3138: Protein of u 29.3 1.5E+02 0.0032 24.5 5.0 16 47-62 82-97 (514)
38 PF11903 DUF3423: Protein of u 29.1 89 0.0019 18.7 3.0 20 41-60 1-20 (72)
39 PF10855 DUF2648: Protein of u 28.8 32 0.0007 17.1 0.8 15 1-15 1-15 (33)
40 PF07438 DUF1514: Protein of u 28.6 70 0.0015 18.7 2.3 9 27-35 28-36 (66)
41 PF11839 DUF3359: Protein of u 28.6 1.6E+02 0.0035 18.8 4.2 22 1-22 1-22 (96)
42 PRK10318 hypothetical protein; 27.6 1.5E+02 0.0034 19.7 4.1 15 16-30 16-30 (121)
43 COG1318 Predicted transcriptio 27.1 55 0.0012 23.3 2.1 20 41-60 39-58 (182)
44 PF03032 Brevenin: Brevenin/es 27.0 38 0.00082 18.4 1.0 11 5-15 6-16 (46)
45 TIGR00547 lolA periplasmic cha 26.7 66 0.0014 23.3 2.6 39 1-39 1-39 (204)
46 TIGR03474 incFII_RepA incFII f 26.0 36 0.00078 25.5 1.1 31 23-53 159-189 (275)
47 PRK13750 replication protein; 26.0 38 0.00083 25.6 1.2 31 23-53 167-197 (285)
48 PF04202 Mfp-3: Foot protein 3 25.9 73 0.0016 18.7 2.1 10 1-10 1-10 (71)
49 KOG0286 G-protein beta subunit 25.6 49 0.0011 25.8 1.7 34 122-158 79-112 (343)
50 PF04863 EGF_alliinase: Alliin 24.4 84 0.0018 17.8 2.1 16 44-59 1-16 (56)
51 PF09680 Tiny_TM_bacill: Prote 24.0 92 0.002 14.4 1.9 7 4-10 6-12 (24)
52 PF12393 Dr_adhesin: Dr family 24.0 85 0.0018 14.0 2.3 18 1-18 1-18 (21)
53 PF10614 CsgF: Type VIII secre 23.9 51 0.0011 22.6 1.4 23 1-23 1-23 (142)
54 PTZ00264 circumsporozoite-rela 23.1 73 0.0016 21.2 1.9 21 1-21 1-21 (148)
55 PRK04561 tatA twin arginine tr 22.5 1.9E+02 0.0042 17.5 3.8 34 6-39 10-43 (75)
56 PRK14859 tatA twin arginine tr 22.4 1.2E+02 0.0026 17.7 2.6 32 8-39 12-43 (63)
57 PF11254 DUF3053: Protein of u 22.3 2.9E+02 0.0062 20.7 5.1 43 5-47 5-52 (229)
58 PF08557 Lipid_DES: Sphingolip 22.0 96 0.0021 16.2 1.9 22 23-44 17-38 (39)
59 PF13983 YsaB: YsaB-like lipop 21.6 66 0.0014 19.1 1.4 12 146-157 60-71 (77)
60 PF11153 DUF2931: Protein of u 21.3 84 0.0018 22.9 2.2 8 1-8 1-8 (216)
61 PRK09810 entericidin A; Provis 21.1 1E+02 0.0022 16.3 1.9 6 1-6 2-7 (41)
62 PRK00575 tatA twin arginine tr 21.0 1.3E+02 0.0028 19.1 2.6 33 7-39 11-43 (92)
63 COG1019 Predicted nucleotidylt 20.7 76 0.0017 22.1 1.8 17 29-45 106-122 (158)
64 cd02164 PPAT_CoAS phosphopante 20.5 82 0.0018 21.5 1.9 19 27-45 101-119 (143)
65 PRK02958 tatA twin arginine tr 20.1 1.6E+02 0.0034 17.7 2.8 32 7-38 11-42 (73)
66 PRK00191 tatA twin arginine tr 20.0 1.4E+02 0.0031 18.5 2.7 33 7-39 10-42 (84)
No 1
>cd05381 SCP_PR-1_like SCP_PR-1_like: SCP-like extracellular protein domain, PR-1 like subfamily. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), which accumulates after infections with pathogens, and may act as an anti-fungal agent or be involved in cell wall loosening. It also includes CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Probab=100.00 E-value=2.3e-44 Score=246.02 Aligned_cols=134 Identities=49% Similarity=0.977 Sum_probs=122.1
Q ss_pred HHHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHHhhcCCCCccCCCCCCccceEEEccCCCCCHHHHHHHHHcCcCCCCC
Q 036505 26 EDYLKAHNEARASVGVGPMSWVYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIAWSNQGEITATEFVKMCMDGKPLYDY 105 (163)
Q Consensus 26 ~~iL~~hN~~R~~~~m~~L~Wd~~La~~A~~~a~~~~~~C~~~~~~~~~~Geni~~~~~~~~~~~~~v~~W~~e~~~~~~ 105 (163)
++||+.||.+|+.++|++|+||++|++.||.+|++|+..|...|+.. .+|||+++.......+.++|+.|++|...|++
T Consensus 2 ~~il~~hN~~R~~~~~~~L~Wd~~La~~A~~~a~~~~~~c~~~~~~~-~~GeNi~~~~~~~~~~~~~v~~W~~e~~~y~~ 80 (136)
T cd05381 2 QDFLDAHNAARAAVGVPPLKWDDTLAAYAQRYANQRRGDCALVHSNG-PYGENLFWGSGGNWSAADAVASWVSEKKYYDY 80 (136)
T ss_pred hHHHHHHHHHHHhcCCCcceECHHHHHHHHHHHHHhcCCCCcccCCC-CCCceEEEecCCCCCHHHHHHHHHhccccCCC
Confidence 68999999999999999999999999999999998888899988776 59999998765556789999999999999999
Q ss_pred CCCcccCCCCccchHHHHHHHhcCeeeEEEEEeCC-CCeeEEEEEEecCCCCCCCCCCC
Q 036505 106 NSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNN-NGTLNFVICNYDPRGNVFGQHPY 163 (163)
Q Consensus 106 ~~~~~~~~~~~~~~ftq~vw~~~~~vGCa~~~c~~-~~~~~~~vC~Y~p~gN~~g~~~Y 163 (163)
..+.+.. +..++|||||||+++++||||++.|.. +.. ++||+|+|+||+.|++||
T Consensus 81 ~~~~~~~-~~~~~hftq~vw~~t~~vGCa~~~c~~~~~~--~vvC~Y~p~gn~~g~~~Y 136 (136)
T cd05381 81 DSNTCAA-GKMCGHYTQVVWRNTTRVGCARVTCDNGGGV--FIICNYDPPGNYIGQRPY 136 (136)
T ss_pred CCCCcCC-CccchHHHHHHHHhcCEeceEEEEeCCCCcE--EEEEEeeCCCCCCCCCCC
Confidence 8877765 668999999999999999999999987 444 899999999999999999
No 2
>cd05384 SCP_PRY1_like SCP_PRY1_like: SCP-like extracellular protein domain, PRY1-like sub-family restricted to fungi. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. PRY1 is a yeast protein that is up-regulated in core ESCRT mutants. This PRY1-like group also contains fruiting body proteins SC7/14 from Schizophyllum commune.
Probab=100.00 E-value=5.8e-40 Score=222.37 Aligned_cols=129 Identities=32% Similarity=0.573 Sum_probs=112.8
Q ss_pred CchHHHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHHhhcCCCCccCCCCCCccceEEEccCCCCCHHHHHHHHHcCcCC
Q 036505 23 NKPEDYLKAHNEARASVGVGPMSWVYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIAWSNQGEITATEFVKMCMDGKPL 102 (163)
Q Consensus 23 ~~~~~iL~~hN~~R~~~~m~~L~Wd~~La~~A~~~a~~~~~~C~~~~~~~~~~Geni~~~~~~~~~~~~~v~~W~~e~~~ 102 (163)
+.|+.||+.||.+|+.++|+||+||++|+..||.||++|+..|.+.|+.. .+|||++... .++.++|+.|++|..+
T Consensus 1 ~~~~~iL~~hN~~R~~~g~~~L~w~~~La~~A~~~a~~c~~~~~~~~~~~-~~geNi~~~~---~~~~~~v~~W~~e~~~ 76 (129)
T cd05384 1 SFASSILDAHNSKRALHGVQPLTWNNTLAEYAQDYANSYDCSGNLAHSGG-PYGENLAAGY---PSGTSAVDAWYDEIED 76 (129)
T ss_pred CHHHHHHHHHHHHHHHcCCCcCccCHHHHHHHHHHHHHhccCCceecCCC-CCCcEEEEec---CCHHHHHHHHHhhhhh
Confidence 36899999999999999999999999999999999997766666888876 6999998754 2688999999999999
Q ss_pred CCCCCCcccCCCCccchHHHHHHHhcCeeeEEEEEeCCCCeeEEEEEEecCCCCCCC
Q 036505 103 YDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFG 159 (163)
Q Consensus 103 ~~~~~~~~~~~~~~~~~ftq~vw~~~~~vGCa~~~c~~~~~~~~~vC~Y~p~gN~~g 159 (163)
|+|..+.+ +..++|||||||+++++||||++.|+... ..++||+|+|+||+.|
T Consensus 77 y~~~~~~~---~~~~~h~tqmvw~~t~~vGCa~~~c~~~~-~~~~vC~Y~p~Gn~~g 129 (129)
T cd05384 77 YDYSNPGF---SEATGHFTQLVWKSTTQVGCAYKDCGGAW-GWYIVCEYDPAGNVIG 129 (129)
T ss_pred CCCCCCCC---CCcccchhhhhhhccceeeeEEEEeCCCC-eEEEEEEEECCCCCCc
Confidence 99987544 34799999999999999999999998732 2389999999999876
No 3
>cd05382 SCP_GAPR-1_like SCP_GAPR-1_like: SCP-like extracellular protein domain, golgi-associated plant pathogenesis related protein (GAPR)-like sub-family. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. The human GAPR-1 protein has been reported to dimerize, and such a dimer may form an active site containing a catalytic triad. GAPR-1 and GLIPR-2 appear to be synonyms.
Probab=100.00 E-value=2.6e-40 Score=224.75 Aligned_cols=130 Identities=32% Similarity=0.516 Sum_probs=116.0
Q ss_pred CchHHHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHHhhcCCCCccCCCCCCccceEEEccC--CCCCHHHHHHHHHcCc
Q 036505 23 NKPEDYLKAHNEARASVGVGPMSWVYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIAWSNQ--GEITATEFVKMCMDGK 100 (163)
Q Consensus 23 ~~~~~iL~~hN~~R~~~~m~~L~Wd~~La~~A~~~a~~~~~~C~~~~~~~~~~Geni~~~~~--~~~~~~~~v~~W~~e~ 100 (163)
+++++||+.||++|+.++|++|+||++|+..||.||++|+..+.+.|+.+..+|||+++... ....++++|+.|++|.
T Consensus 1 ~~~~~iL~~hN~~R~~~g~~~L~wd~~La~~A~~~a~~c~~~~~~~h~~~~~~GeN~~~~~~~~~~~~~~~~v~~W~~e~ 80 (132)
T cd05382 1 DFQKECLDAHNEYRALHGAPPLKLDKELAKEAQKWAEKLASSGKLQHSSPSGYGENLAYASGSGPDLTGEEAVDSWYNEI 80 (132)
T ss_pred CHHHHHHHHHHHHHHHcCCCcCeeCHHHHHHHHHHHHHhhhcCceeCCCCCCCCceeEEecCCCCCCCHHHHHHHHHhcc
Confidence 46899999999999999999999999999999999998777777888877679999998764 3568899999999999
Q ss_pred CCCCCCCCcccCCCCccchHHHHHHHhcCeeeEEEEEeCCCCeeEEEEEEecCCCCC
Q 036505 101 PLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNV 157 (163)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~ftq~vw~~~~~vGCa~~~c~~~~~~~~~vC~Y~p~gN~ 157 (163)
.+|++..+.. +..++||+||||+++++||||++.|+.+.+ ++||+|+|+||+
T Consensus 81 ~~y~~~~~~~---~~~~gh~tqmvw~~t~~vGCa~~~~~~~~~--~~vC~Y~p~Gn~ 132 (132)
T cd05382 81 KKYDFNKPGF---SSKTGHFTQVVWKSSTELGVGVAKSKKGCV--YVVARYRPAGNV 132 (132)
T ss_pred ccCCCCCCCC---CCCCCCeEEeEecCCCceeeEEEEcCCCCE--EEEEEEeCCCCC
Confidence 9999985544 447999999999999999999999987666 899999999995
No 4
>cd05385 SCP_GLIPR-1_like SCP_GLIPR-1_like: SCP-like extracellular protein domain, glioma pathogenesis-related protein (GLIPR)-like sub-family. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Probab=100.00 E-value=2.1e-37 Score=213.52 Aligned_cols=125 Identities=30% Similarity=0.573 Sum_probs=108.1
Q ss_pred CchHHHHHHHHHHHhhCC-----CCCcccCHHHHHHHHHHHHhhcCCCCccCCCC-----------CCccceEEEccCCC
Q 036505 23 NKPEDYLKAHNEARASVG-----VGPMSWVYKLADYSHKHAQKLKGNCNLKKPQV-----------SKYSETIAWSNQGE 86 (163)
Q Consensus 23 ~~~~~iL~~hN~~R~~~~-----m~~L~Wd~~La~~A~~~a~~~~~~C~~~~~~~-----------~~~Geni~~~~~~~ 86 (163)
+++++||+.||.+|+.+. |++|+||++||..||.||+ +|.+.|+.. ..+||||+......
T Consensus 1 ~f~~~~L~~HN~~R~~~~p~a~~m~~l~Wd~~La~~Aq~~a~----~C~~~~~~~~~~~~~~~~~~~~~GeNi~~~~~~~ 76 (144)
T cd05385 1 EFIDECVRIHNELRSKVSPPAANMRYMTWDAALAKTARAWAK----KCKFKHNIYLGKRYKCHPKFTSVGENIWLGSIYI 76 (144)
T ss_pred CHHHHHHHHHHHHHhhCCCCcccCcccccCHHHHHHHHHHHh----cCCCCCCchhhcccccccccCcccceeeecccCC
Confidence 468899999999999994 8999999999999999999 999887642 35899998876555
Q ss_pred CCHHHHHHHHHcCcCCCCCCCCcccCCCCccchHHHHHHHhcCeeeEEEEEeCCCC---eeEEEEEEecCC
Q 036505 87 ITATEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNG---TLNFVICNYDPR 154 (163)
Q Consensus 87 ~~~~~~v~~W~~e~~~~~~~~~~~~~~~~~~~~ftq~vw~~~~~vGCa~~~c~~~~---~~~~~vC~Y~p~ 154 (163)
..+.++|+.||+|..+|+|..+.+.. .++|||||||+++++||||++.|+.+. ...++||+|+|+
T Consensus 77 ~~~~~av~~W~~e~~~y~~~~~~~~~---~~ghftqmvw~~t~~vGCa~~~c~~~~~~~~~~~vVC~Y~p~ 144 (144)
T cd05385 77 FSPKNAVTSWYNEGKFYDFDTNSCSR---VCGHYTQVVWATSYKVGCAVAFCPNLGGIPNAAIFVCNYAPA 144 (144)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCCCC---cccCHHHHHHhhccccceEEEECCCCCCccccEEEEEeCCCC
Confidence 68899999999999999998776643 799999999999999999999998742 234899999984
No 5
>smart00198 SCP SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains. Human glioma pathogenesis-related protein GliPR and the plant pathogenesis-related protein represent functional links between plant defense systems and human immune system. This family has no known function.
Probab=100.00 E-value=1.9e-37 Score=213.61 Aligned_cols=127 Identities=31% Similarity=0.611 Sum_probs=111.2
Q ss_pred chHHHHHHHHHHHhhCC-----------CCCcccCHHHHHHHHHHHHhhcCCCCccCCCCCCccceEEEccC----CCCC
Q 036505 24 KPEDYLKAHNEARASVG-----------VGPMSWVYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIAWSNQ----GEIT 88 (163)
Q Consensus 24 ~~~~iL~~hN~~R~~~~-----------m~~L~Wd~~La~~A~~~a~~~~~~C~~~~~~~~~~Geni~~~~~----~~~~ 88 (163)
.|+.||+.||.+|+.++ |++|+||++||..|+.+|+ +|...|+....+|||+++... ....
T Consensus 2 ~~~~iL~~HN~~R~~~a~G~~~~p~a~~m~~l~Wd~~La~~A~~~a~----~C~~~~~~~~~~GeNi~~~~~~~~~~~~~ 77 (144)
T smart00198 2 QQQEILDAHNKLRSQVAKGLLANPAASNMLKLTWDCELASSAQNWAN----QCPFGHSTPRGYGENLAWWSSSTDLPITY 77 (144)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCHHHHHHHHHHHH----hCCCcCCCcCCcCcceEEecccCcccchh
Confidence 58899999999999999 9999999999999999999 999999887689999998653 2357
Q ss_pred HHHHHHHHHcCcCCCCCCCCcccCCCCccchHHHHHHHhcCeeeEEEEEeCCCC-eeEEEEEEecCC
Q 036505 89 ATEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNG-TLNFVICNYDPR 154 (163)
Q Consensus 89 ~~~~v~~W~~e~~~~~~~~~~~~~~~~~~~~ftq~vw~~~~~vGCa~~~c~~~~-~~~~~vC~Y~p~ 154 (163)
+.++|+.||+|..+|++..+.+...+..++|||||||+++++||||++.|.++. ...++||+|+|+
T Consensus 78 ~~~av~~W~~e~~~y~~~~~~~~~~~~~~~hftqmvw~~s~~vGCa~~~c~~~~~~~~~~vC~Y~P~ 144 (144)
T smart00198 78 ASAAVQLWYDEFQDYGYSSNTCKDTNGKIGHYTQVVWAKTYKVGCGVSNCPDGTKKKTVVVCNYDPP 144 (144)
T ss_pred HHHHHHHHHHHHHHcCCCCCccccCccchhHHHHHHHHhcCCcceEEEECCCCCcceEEEEEecCCC
Confidence 888999999999999998876543245799999999999999999999998864 234899999995
No 6
>cd05383 SCP_CRISP SCP_CRISP: SCP-like extracellular protein domain, CRISP-like sub-family. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. Involvement of CRISP in response to pathogens, fertilization, and sperm maturation have been proposed. One member, Tex31 from the venom duct of Conus textile, has been shown to possess proteolytic activity sensitive to serine protease inhibitors. SCP has also been proposed to be a Ca++ chelating serine protease. The Ca++-chelating function would fit with various signaling processes that members of this family, such as the CRISPs, are involved in, and is supported by sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how helothermine, a toxic peptide secreted by the beaded lizard, blocks Ca++ t
Probab=100.00 E-value=4.1e-37 Score=210.68 Aligned_cols=125 Identities=28% Similarity=0.460 Sum_probs=107.6
Q ss_pred chHHHHHHHHHHHhhCC-----CCCcccCHHHHHHHHHHHHhhcCCCCccCCCC-------CCccceEEEccCCCCCHHH
Q 036505 24 KPEDYLKAHNEARASVG-----VGPMSWVYKLADYSHKHAQKLKGNCNLKKPQV-------SKYSETIAWSNQGEITATE 91 (163)
Q Consensus 24 ~~~~iL~~hN~~R~~~~-----m~~L~Wd~~La~~A~~~a~~~~~~C~~~~~~~-------~~~Geni~~~~~~~~~~~~ 91 (163)
.|+.||+.||.+|+.+. |++|+||++||..||.||+ +|.+.|++. ..+|||++... ......+
T Consensus 2 ~~~~il~~HN~~R~~~~p~a~~M~~l~Wd~~La~~A~~~a~----~C~~~~~~~~~~~~~~~~~GeNl~~~~-~~~~~~~ 76 (138)
T cd05383 2 VQKEIVDLHNELRRSVNPTASNMLKMEWNEEAAQNAKKWAN----TCNLTHSPPNGRTIGGITCGENIFMSS-YPRSWSD 76 (138)
T ss_pred HHHHHHHHHHHHhccCCCCcccCcccEeCHHHHHHHHHHHh----cCCCcCCchhhcccCCCCcceeeeccC-CCCCHHH
Confidence 47899999999999975 6789999999999999999 999888753 24799999765 3357889
Q ss_pred HHHHHHcCcCCCCCCCCcccCCCCccchHHHHHHHhcCeeeEEEEEeCCCCeeEEEEEEecCC
Q 036505 92 FVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPR 154 (163)
Q Consensus 92 ~v~~W~~e~~~~~~~~~~~~~~~~~~~~ftq~vw~~~~~vGCa~~~c~~~~~~~~~vC~Y~p~ 154 (163)
+|+.||+|..+|+|+.+.+.. +..++|||||||+++++||||++.|..+....++||+|+|+
T Consensus 77 av~~W~~e~~~y~~~~~~~~~-~~~~~hftqmvw~~t~~vGCa~~~c~~~~~~~~~vC~Y~P~ 138 (138)
T cd05383 77 VIQAWYDEYKDFKYGVGATPP-GAVVGHYTQIVWYKSYLVGCAVAYCPNSKYKYFYVCHYCPA 138 (138)
T ss_pred HHHHHHHHHHhCCCCCCCCCC-CCchhhHHHHHHHhccccceEEEECCCCCcCEEEEEecCCC
Confidence 999999999999998876544 66899999999999999999999998853234899999995
No 7
>cd05559 SCP_HrTT-1 SCP_HrTT-1: SCP-like extracellular protein domain in HrTT-1, a tail-tip epidermis marker in ascidians. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Probab=100.00 E-value=4e-36 Score=205.32 Aligned_cols=123 Identities=30% Similarity=0.536 Sum_probs=107.1
Q ss_pred hHHHHHHHHHHHhhCC-----CCCcccCHHHHHHHHHHHHhhcCCCCccCCCCC---CccceEEEccCCCCCHHHHHHHH
Q 036505 25 PEDYLKAHNEARASVG-----VGPMSWVYKLADYSHKHAQKLKGNCNLKKPQVS---KYSETIAWSNQGEITATEFVKMC 96 (163)
Q Consensus 25 ~~~iL~~hN~~R~~~~-----m~~L~Wd~~La~~A~~~a~~~~~~C~~~~~~~~---~~Geni~~~~~~~~~~~~~v~~W 96 (163)
|+.||+.||.+|+.++ |.+|+||++||..||.||+ +|.+.|++.. .+|||++....+...+.++|+.|
T Consensus 1 r~~il~~HN~~R~~~~p~a~~m~~L~Wd~~La~~A~~~a~----~C~~~~~~~~~~~~~GeNl~~~~~~~~~~~~~v~~W 76 (136)
T cd05559 1 RLNLVDLHNQYRSQVSPPAANMLKMTWDEELAALAEAYAR----KCIWDHNPDRGHLRVGENLFISTGPPFDATKAVEDW 76 (136)
T ss_pred CcHHHHHHHHHHhhCCCccccCcccccCHHHHHHHHHHHH----hccccCCCcccCCCceeeeeecCCCCCCHHHHHHHH
Confidence 5789999999999986 7789999999999999999 9999887643 69999998765556789999999
Q ss_pred HcCcCCCCCCCCcccCCCCccchHHHHHHHhcCeeeEEEEEeCCC-----CeeEEEEEEec
Q 036505 97 MDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNN-----GTLNFVICNYD 152 (163)
Q Consensus 97 ~~e~~~~~~~~~~~~~~~~~~~~ftq~vw~~~~~vGCa~~~c~~~-----~~~~~~vC~Y~ 152 (163)
|+|..+|++..+.+.. +..++|||||||+++++||||++.|+.+ ....++||+|+
T Consensus 77 ~~e~~~y~~~~~~~~~-~~~~~hftqmvw~~t~~vGCa~~~c~~~~~~~~~~~~~~vC~Y~ 136 (136)
T cd05559 77 NNEKLDYNYNTNTCAP-NKMCGHYTQVVWANTFKIGCGSYFCETLEVLRWENATLLVCNYG 136 (136)
T ss_pred HHHHHhcCCCCCCCCC-CCcccchHHHHHhccCccceEEEECCCCCCCCcccCEEEEecCC
Confidence 9999999998877766 6689999999999999999999999752 12348999995
No 8
>cd00168 SCP SCP: SCP-like extracellular protein domain, found in eukaryotes and prokaryotes. This family includes plant pathogenesis-related protein 1 (PR-1), which accumulates after infections with pathogens, and may act as an anti-fungal agent or be involved in cell wall loosening. This family also includes CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. Roles for CRISP, in response to pathogens, fertilization, and sperm maturation have been proposed. One member, Tex31 from the venom duct of Conus textile, has been shown to possess proteolytic activity sensitive to serine protease inhibitors. The human GAPR-1 protein has been reported to dimerize, and such a dimer may form an active site containing a catalytic triad. SCP has also been proposed to be a Ca++ chelating serine protease. The Ca++-chelating function would fit with various signaling processes that members of this family, such as
Probab=100.00 E-value=1.8e-35 Score=198.47 Aligned_cols=118 Identities=30% Similarity=0.569 Sum_probs=104.8
Q ss_pred hHHHHHHHHHHHhhC-CCCCcccCHHHHHHHHHHHHhhcCCCCccCCCCC---CccceEEEccCCCCCHHHHHHHHHcCc
Q 036505 25 PEDYLKAHNEARASV-GVGPMSWVYKLADYSHKHAQKLKGNCNLKKPQVS---KYSETIAWSNQGEITATEFVKMCMDGK 100 (163)
Q Consensus 25 ~~~iL~~hN~~R~~~-~m~~L~Wd~~La~~A~~~a~~~~~~C~~~~~~~~---~~Geni~~~~~~~~~~~~~v~~W~~e~ 100 (163)
+++||+.||.+|+.+ +|+||+||++|+..||.+|+ +|.+.|+... .+|||++....+ .++.++|+.|++|.
T Consensus 1 ~~~il~~hN~~R~~~a~~~~L~wd~~La~~A~~~a~----~c~~~h~~~~~~~~~geNi~~~~~~-~~~~~~v~~W~~e~ 75 (122)
T cd00168 1 AQEVVRLHNSYRAKVNGMLPMSWDAELAKTAQNYAN----RCIFKHSGEDGRGFVGENLAAGSYD-MTGPAAVQAWYNEI 75 (122)
T ss_pred CcHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHHHh----hccccCCCcccCCCCCceeEEecCC-CCHHHHHHHHHHHH
Confidence 367999999999999 99999999999999999999 9999887653 699999987643 67899999999999
Q ss_pred CCCCCCCCcccCCCCccchHHHHHHHhcCeeeEEEEEeCCCCeeEEEEEEec
Q 036505 101 PLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNYD 152 (163)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~ftq~vw~~~~~vGCa~~~c~~~~~~~~~vC~Y~ 152 (163)
.+|+|.+... +..++||+||||+++++||||++.|+.++. ++||+|+
T Consensus 76 ~~y~~~~~~~---~~~~~h~~qmvw~~s~~vGca~~~~~~~~~--~~vC~Y~ 122 (122)
T cd00168 76 KNYNFGQPGF---SSGTGHYTQVVWKNTTKIGCGVAFCGSNSY--YVVCNYG 122 (122)
T ss_pred HhCCCCCCCC---CCCccchhhhhcccCCeeeeEEEEcCCCCE--EEEEeCc
Confidence 9999985544 347999999999999999999999997666 8999995
No 9
>KOG3017 consensus Defense-related protein containing SCP domain [Function unknown]
Probab=100.00 E-value=1e-34 Score=213.71 Aligned_cols=137 Identities=34% Similarity=0.650 Sum_probs=117.5
Q ss_pred CchHHHHHHHHHHHhhCC-----CCCcccCHHHHHHHHHHHHhhcCCCCccCCC-----CCCccceEEEccCC------C
Q 036505 23 NKPEDYLKAHNEARASVG-----VGPMSWVYKLADYSHKHAQKLKGNCNLKKPQ-----VSKYSETIAWSNQG------E 86 (163)
Q Consensus 23 ~~~~~iL~~hN~~R~~~~-----m~~L~Wd~~La~~A~~~a~~~~~~C~~~~~~-----~~~~Geni~~~~~~------~ 86 (163)
+.++++++.||.+|..++ |++|+||++||..||.||+ +|.+.|+. ...+|||+++.... .
T Consensus 40 ~~~~~~~~~hn~~r~~~~~~as~m~~m~Wd~~La~~Aq~~a~----~c~~~~~~~~~~~~~~~GeNl~~~~~~~~~~~~~ 115 (225)
T KOG3017|consen 40 NLRSEILNGHNVARGAVGPPASNMMKLKWDDELAALAQNWAN----TCPFGHDKCVHTSFGPYGENLAWGWSSNPPLSLD 115 (225)
T ss_pred HHHHHHHhhhHHhcCccCCchHhCccccCCHHHHHHHHHHHh----hCCcccCccccccCCCCcccceeeccCCCCcccc
Confidence 468889999999999999 9999999999999999999 89888764 44679999987653 1
Q ss_pred CCHHHHHHHHHcCcCCCCCCCCcccCC--CCccchHHHHHHHhcCeeeEEEEEeCCCC---eeEEEEEEecCCCCCCC-C
Q 036505 87 ITATEFVKMCMDGKPLYDYNSNTCALN--GTKCAIYTQVVWRNSVRLGCAKERCNNNG---TLNFVICNYDPRGNVFG-Q 160 (163)
Q Consensus 87 ~~~~~~v~~W~~e~~~~~~~~~~~~~~--~~~~~~ftq~vw~~~~~vGCa~~~c~~~~---~~~~~vC~Y~p~gN~~g-~ 160 (163)
..+..+++.|+.|...|++.++.+... +..++|||||||+++++||||++.|+++. ...++||+|+|+||..+ +
T Consensus 116 ~~~~~a~~~w~~e~~~~~~~~~~~~~~~~~~~~gHyTQ~vw~~s~~vGCgv~~c~~~~~~~~~~~~vC~Y~p~g~~~~~~ 195 (225)
T KOG3017|consen 116 TSGALAVEAWESEFQEYDWSSNTCSSADFGEGIGHYTQMVWAKSTKVGCGVVRCGNGSNGYNTVAVVCNYDPPGNNINGE 195 (225)
T ss_pred ccHHHHHHHHHHHHHHccCcccccCcccCCCcceEEEEEEEeCCceeceeeccCCCCCCCcceEEEEEEeecCCCCcCCC
Confidence 567789999999999999999888742 56899999999999999999999999863 34589999999965555 5
Q ss_pred CCC
Q 036505 161 HPY 163 (163)
Q Consensus 161 ~~Y 163 (163)
.||
T Consensus 196 ~~y 198 (225)
T KOG3017|consen 196 IPY 198 (225)
T ss_pred CcC
Confidence 776
No 10
>cd05380 SCP_euk SCP_euk: SCP-like extracellular protein domain, as found mainly in eukaryotes. This family includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Probab=100.00 E-value=6.1e-34 Score=195.66 Aligned_cols=123 Identities=28% Similarity=0.537 Sum_probs=104.9
Q ss_pred hHHHHHHHHHHHhhC------------CCCCcccCHHHHHHHHHHHHhhcCCCCccCCCCC---CccceEEEccCC----
Q 036505 25 PEDYLKAHNEARASV------------GVGPMSWVYKLADYSHKHAQKLKGNCNLKKPQVS---KYSETIAWSNQG---- 85 (163)
Q Consensus 25 ~~~iL~~hN~~R~~~------------~m~~L~Wd~~La~~A~~~a~~~~~~C~~~~~~~~---~~Geni~~~~~~---- 85 (163)
|+.||+.||.+|+.+ .|++|+||++||..|+.+|+ +|...|+... .+|||++.....
T Consensus 1 ~~~il~~HN~~R~~~a~g~~~~~p~a~~m~~l~Wd~~La~~A~~~a~----~C~~~~~~~~~~~~~GeNl~~~~~~~~~~ 76 (144)
T cd05380 1 RQAILDAHNELRSKVAKGTYSLLPPASNMPKLKWDDELAALAQNWAK----TCVFEHSPCRNTGGVGQNLAAGSSTGSTV 76 (144)
T ss_pred CcHHHHHHHHHHHHhhcCCCCCCCchhcCCcceeCHHHHHHHHHHHh----cCCCcCCcccCCCCCCcEEEEeccCCCCH
Confidence 468999999999999 69999999999999999999 9988887654 699999987643
Q ss_pred CCCHHHHHHHHHcCcCCCCCCCC-cccCCCCccchHHHHHHHhcCeeeEEEEEeCCC-CeeEEEEEEec
Q 036505 86 EITATEFVKMCMDGKPLYDYNSN-TCALNGTKCAIYTQVVWRNSVRLGCAKERCNNN-GTLNFVICNYD 152 (163)
Q Consensus 86 ~~~~~~~v~~W~~e~~~~~~~~~-~~~~~~~~~~~ftq~vw~~~~~vGCa~~~c~~~-~~~~~~vC~Y~ 152 (163)
...+.++|+.||+|...|++... .+.. +..++|||||||+++++||||++.|..+ ....++||+|+
T Consensus 77 ~~~~~~~v~~W~~e~~~~~~~~~~~~~~-~~~~~hftq~vw~~t~~vGCa~~~~~~~~~~~~~~vC~Y~ 144 (144)
T cd05380 77 EELAEDAVNAWYNELKDYGFGSNPTNNF-NSGIGHFTQMVWAKTTKVGCAVARCGKDGGNKTVVVCNYS 144 (144)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCccccc-ccchhHHHHHHHHhcCccceEEEEeecCCceEEEEEecCC
Confidence 23688999999999999999875 2233 5689999999999999999999999863 23348999995
No 11
>PF00188 CAP: Cysteine-rich secretory protein family; InterPro: IPR014044 The cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins (CAP) superfamily proteins are found in a wide range of organisms, including prokaryotes [] and non-vertebrate eukaryotes [], The nine subfamilies of the mammalian CAP superfamily include: the human glioma pathogenesis-related 1 (GLIPR1), Golgi associated pathogenesis related-1 (GAPR1) proteins, peptidase inhibitor 15 (PI15), peptidase inhibitor 16 (PI16), cysteine-rich secretory proteins (CRISPs), CRISP LCCL domain containing 1 (CRISPLD1), CRISP LCCL domain containing 2 (CRISPLD2), mannose receptor like and the R3H domain containing like proteins. Members are most often secreted and have an extracellular endocrine or paracrine function and are involved in processes including the regulation of extracellular matrix and branching morphogenesis, potentially as either proteases or protease inhibitors; in ion channel regulation in fertility; as tumour suppressor or pro-oncogenic genes in tissues including the prostate; and in cell-cell adhesion during fertilisation. The overall protein structural conservation within the CAP superfamily results in fundamentally similar functions for the CAP domain in all members, yet the diversity outside of this core region dramatically alters the target specificity and, thus, the biological consequences []. The Ca++-chelating function [] would fit with the various signalling processes (e.g. the CRISP proteins) that members of this family are involved in, and also the sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how Q91055 from SWISSPROT blocks the Ca++ transporting ryanodine receptors. This entry represents the CAP domain common to all members of the CAP superfamily. The CAP domain forms a unique 3 layer alpha-beta-alpha fold with some, though not all, of the structural elements found in proteases [].; PDB: 3U3N_C 3U3U_C 3U3L_C 1U53_A 1RC9_A 1SMB_A 3NT8_B 1QNX_A 1WVR_A 3Q2U_A ....
Probab=99.89 E-value=3.3e-23 Score=136.69 Aligned_cols=119 Identities=25% Similarity=0.435 Sum_probs=85.6
Q ss_pred HHHHHHHH-hhCCCCCcccCHHHHHHHHHHHHhhcCCCCccCCCCCCccceEEEccCCCCCHH---HHHHHHHcCcCCCC
Q 036505 29 LKAHNEAR-ASVGVGPMSWVYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIAWSNQGEITAT---EFVKMCMDGKPLYD 104 (163)
Q Consensus 29 L~~hN~~R-~~~~m~~L~Wd~~La~~A~~~a~~~~~~C~~~~~~~~~~Geni~~~~~~~~~~~---~~v~~W~~e~~~~~ 104 (163)
|+.||++| ...++++|+||++|+..|+.+|+ .|...+......|++............ ..++.|+.+...++
T Consensus 1 L~~~N~~R~~~~~~~~L~~d~~L~~~A~~~a~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (124)
T PF00188_consen 1 LDLHNEYRSAANGLPPLKWDPELAKAAQAHAK----YCANSNSLSHDSGENGSQSSRFGSYSDAQVTAVENWYSESKNYN 76 (124)
T ss_dssp HHHHHHHHHBSSTBB--EE-HHHHHHHHHHHT----TTCSSEETTEESEEEEEEESSTTSHHHHHHHHHHHHHGGGGGEE
T ss_pred CHHHHHHHHHhCCCCCCeeCHHHHHHHHHhhH----HhhhhcccccccCCCCccccccccccchhhHHHHHHHhcccccc
Confidence 78999999 88889999999999999999999 777644444467888876653322111 12899999999887
Q ss_pred CCCC-cccCCCCccchHHHHHHHhcCeeeEEEEEeCCCCeeEEEEEEe
Q 036505 105 YNSN-TCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNY 151 (163)
Q Consensus 105 ~~~~-~~~~~~~~~~~ftq~vw~~~~~vGCa~~~c~~~~~~~~~vC~Y 151 (163)
+... ........++||+||+|.++++||||++.|+.+....++||.|
T Consensus 77 ~~~~~~~~~~~~~~~h~~~ll~~~~~~iGca~~~~~~~~~~~~~vc~y 124 (124)
T PF00188_consen 77 FQNQSIFNSWMNSPGHFTNLLWPNTTRIGCAVANCPNGKNNYYWVCNY 124 (124)
T ss_dssp TTCSTEESSTTSTCHHHHHHT-TT--EEEEEEEEETTSSSEEEEEEEE
T ss_pred cccchhhhccCCchhhhhhhhcCCCCEEEEEEEEeCCCCeeEEEEEEC
Confidence 7721 1111144789999999999999999999999876233999998
No 12
>TIGR02909 spore_YkwD uncharacterized protein, YkwD family. Members of this protein family represent a subset of those belonging to Pfam family pfam00188 (SCP-like extracellular protein). Based on currently cuttoffs for this model, all member proteins are found in Bacteria capable of endospore formation. Members include a named but uncharacterized protein, YkwD of Bacillus subtilis. Only the C-terminal region is well-conserved and is included in the seed alignment for this model. Three members of this family have an N-terminal domain homologous to the spore coat assembly protein SafA.
Probab=99.86 E-value=4.5e-21 Score=129.39 Aligned_cols=107 Identities=14% Similarity=0.201 Sum_probs=92.1
Q ss_pred CchHHHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHHhhcCCCCccCCCCC----------------CccceEEEccCCC
Q 036505 23 NKPEDYLKAHNEARASVGVGPMSWVYKLADYSHKHAQKLKGNCNLKKPQVS----------------KYSETIAWSNQGE 86 (163)
Q Consensus 23 ~~~~~iL~~hN~~R~~~~m~~L~Wd~~La~~A~~~a~~~~~~C~~~~~~~~----------------~~Geni~~~~~~~ 86 (163)
+.++++|+.||++|..++++||+||+.|++.|+.||++|+..+.+.|..+. ..||||+.+.
T Consensus 3 ~~e~~~l~~iN~~R~~~Gl~pL~~~~~L~~~A~~hA~~ma~~~~~~H~~~~~~~~~~r~~~~g~~~~~~gENi~~g~--- 79 (127)
T TIGR02909 3 AEEKRVVELVNAERAKNGLKPLKADPELSKVARLKSEDMRDKNYFSHTSPTYGSPFDMMKKFGISYRMAGENIAYGN--- 79 (127)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCccCHHHHHHHHHHHHHHHhCCcccccCCCCCCHHHHHHHcCCCcccceeeeeccC---
Confidence 457889999999999999999999999999999999999999999987531 3589998654
Q ss_pred CCHHHHHHHHHcCcCCCCCCCCcccCCCCccchHHHHHHHhcCeeeEEEEEeCCCCeeEEEEEEe
Q 036505 87 ITATEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNY 151 (163)
Q Consensus 87 ~~~~~~v~~W~~e~~~~~~~~~~~~~~~~~~~~ftq~vw~~~~~vGCa~~~c~~~~~~~~~vC~Y 151 (163)
.++.++|+.|++ ..+|+++|+|.+.+++|||++.++++++ |+|-.|
T Consensus 80 ~~~~~~v~~W~~-----------------S~gH~~nil~~~~~~~Gvg~~~~~~g~~--y~~q~F 125 (127)
T TIGR02909 80 STVEAVHNAWMN-----------------SPGHRANILNPNYTEIGVGYVEGGSGGI--YWTQMF 125 (127)
T ss_pred CCHHHHHHHHHc-----------------CHhHHHHHcCCCcCeEeEEEEeCCCCCe--EEEEEe
Confidence 468899999965 4689999999999999999999888765 666555
No 13
>cd05379 SCP_bacterial SCP_bacterial: SCP-like extracellular protein domain, as found in bacteria and archaea. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. Little is known about the biological roles of the bacterial and archaeal SCP domains.
Probab=99.74 E-value=2.9e-17 Score=109.40 Aligned_cols=104 Identities=20% Similarity=0.282 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHHhhcCCCCccCCCCCC----------------ccceEEEccCCCCCH
Q 036505 26 EDYLKAHNEARASVGVGPMSWVYKLADYSHKHAQKLKGNCNLKKPQVSK----------------YSETIAWSNQGEITA 89 (163)
Q Consensus 26 ~~iL~~hN~~R~~~~m~~L~Wd~~La~~A~~~a~~~~~~C~~~~~~~~~----------------~Geni~~~~~~~~~~ 89 (163)
+.+++.+|.+|..++++||+||.+|+..|+.||.+|+....+.|..... +|||++... ..+
T Consensus 2 ~~~~~~iN~~R~~~gl~pl~~~~~l~~~A~~~a~~~~~~~~~~h~~~~~~~~~~~~~~~g~~~~~~~eni~~~~---~~~ 78 (122)
T cd05379 2 QEALELINAYRAQNGLPPLTWDPALAAAAQAHARDMAANGYFSHTGPDGSSPFDRARAAGYPYSSAGENIAYGY---STA 78 (122)
T ss_pred hHHHHHHHHHHHHcCCCCCccChHHHHHHHHHHHHHHhcCccCCcCCCCCCHHHHHHHcCCCcCccchhhcccC---CCH
Confidence 5789999999999999999999999999999999998877787764322 389988765 278
Q ss_pred HHHHHHHHcCcCCCCCCCCcccCCCCccchHHHHHHHhcCeeeEEEEEeCCCCeeEEEEEEe
Q 036505 90 TEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNY 151 (163)
Q Consensus 90 ~~~v~~W~~e~~~~~~~~~~~~~~~~~~~~ftq~vw~~~~~vGCa~~~c~~~~~~~~~vC~Y 151 (163)
.++++.|++ ..+|+.+|+|...+++|||+....++.. ++|..|
T Consensus 79 ~~~~~~w~~-----------------~~~H~~~ll~~~~~~~Gvg~~~~~~~~~--y~~~~f 121 (122)
T cd05379 79 EAAVDGWMN-----------------SPGHRANILNPDYTEVGVGVAYGGDGGY--YWVQVF 121 (122)
T ss_pred HHHHHHHhC-----------------CHhHHHHHcCCCcceeeEEEEeCCCCCe--EEEEec
Confidence 899999965 3679999999999999999999887655 666655
No 14
>COG2340 Uncharacterized protein with SCP/PR1 domains [Function unknown]
Probab=99.38 E-value=2.5e-12 Score=93.55 Aligned_cols=101 Identities=16% Similarity=0.231 Sum_probs=85.0
Q ss_pred CCCchHHHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHHhhcCCCCccCCCCC----------------CccceEEEccC
Q 036505 21 AHNKPEDYLKAHNEARASVGVGPMSWVYKLADYSHKHAQKLKGNCNLKKPQVS----------------KYSETIAWSNQ 84 (163)
Q Consensus 21 ~~~~~~~iL~~hN~~R~~~~m~~L~Wd~~La~~A~~~a~~~~~~C~~~~~~~~----------------~~Geni~~~~~ 84 (163)
.++..+.+++.+|++|..+++++|+||.+|+..|+.|+.+|++...+.|..+. .+||||+.+..
T Consensus 77 ~~~~~~~~~~~~N~~R~~~~l~~L~~n~~L~~~A~~~a~~m~~~g~~sH~~~~g~~~~~r~~~~g~~~~~agENIa~g~~ 156 (207)
T COG2340 77 LAQFEKAVVAETNQERAKHGLPPLAWNATLAKAARNHARDMAKNGYFSHTSPTGETPADRLKKYGISGATAGENIAYGSN 156 (207)
T ss_pred cchhHHHHHHHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHcCCccccCCCCCCHHHHHHhCCcccccccceeecCCC
Confidence 34677889999999999999999999999999999999999999999996531 37999998762
Q ss_pred CCCCHHHHHHHHHcCcCCCCCCCCcccCCCCccchHHHHHHHhcCeeeEEEEEeCC
Q 036505 85 GEITATEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNN 140 (163)
Q Consensus 85 ~~~~~~~~v~~W~~e~~~~~~~~~~~~~~~~~~~~ftq~vw~~~~~vGCa~~~c~~ 140 (163)
. .+..+|+.|++ +.||-.+|+-..-+.+|.|+..-..
T Consensus 157 ~--~~~~~v~~Wl~-----------------S~gH~~nll~~~~~~~Gv~~~~~~~ 193 (207)
T COG2340 157 D--PPEAAVDGWLN-----------------SPGHRKNLLNPAYTEIGVGVAYDAS 193 (207)
T ss_pred C--chHHHHHHhcC-----------------ChhhhhhccCcchhheeEEEEecCC
Confidence 2 22799999944 5689999999999999999987543
No 15
>PF11054 Surface_antigen: Sporozoite TA4 surface antigen; InterPro: IPR021288 This family of proteins is a Eukaryotic family of surface antigens. One of the better characterised members of the family is the sporulated TA4 antigen. The TA4 gene encodes a single polypeptide of 25 kDa which contains a 17 and a 8kDa polypeptide [].
Probab=80.30 E-value=22 Score=26.62 Aligned_cols=133 Identities=17% Similarity=0.192 Sum_probs=75.3
Q ss_pred hHHHHHHHHHHHhhCCCCCcc-----------c-CHHHHHHHHHHHHhhcCCCCccCC-CCC-----------CccceEE
Q 036505 25 PEDYLKAHNEARASVGVGPMS-----------W-VYKLADYSHKHAQKLKGNCNLKKP-QVS-----------KYSETIA 80 (163)
Q Consensus 25 ~~~iL~~hN~~R~~~~m~~L~-----------W-d~~La~~A~~~a~~~~~~C~~~~~-~~~-----------~~Geni~ 80 (163)
.-++|+..|..|...|++... . +++| .....|.+ -|...-. ..+ .-| +.+
T Consensus 35 ~~~CL~E~NaaReAAGL~~F~~A~~~~~~Lp~~~~~e~-~~~t~W~~----iC~~l~pt~~~~~~~~~~~~pf~~G-TyA 108 (254)
T PF11054_consen 35 SVECLSEMNAAREAAGLANFTEATSDDQKLPEPGSEEL-TDDTLWKK----ICEHLIPTQAEPAAEASKLNPFKDG-TYA 108 (254)
T ss_pred chhHHHHHHHHHHhcCchhhHhhcCCcccCCCCCchhc-cchhhHHH----HHHHhcCCCCcchhhccccCcCCCC-ceE
Confidence 567999999999999955321 1 2333 44445555 5543222 111 112 222
Q ss_pred Ec--cCCCCCHHHHHHHHHcCcCCCCCCCCcccCC-----CCccchHHHHHHHhcCe-eeEEEEEeCCC-----------
Q 036505 81 WS--NQGEITATEFVKMCMDGKPLYDYNSNTCALN-----GTKCAIYTQVVWRNSVR-LGCAKERCNNN----------- 141 (163)
Q Consensus 81 ~~--~~~~~~~~~~v~~W~~e~~~~~~~~~~~~~~-----~~~~~~ftq~vw~~~~~-vGCa~~~c~~~----------- 141 (163)
.. .....+..++|+.|-...++|+--.+..... ++..-.|.-|-..+++- .-|.+..|+..
T Consensus 109 f~~lt~~~~dCk~aVdYWKaafknF~glPPs~~~~~~lYndqdnVSFVALYNPs~~atAdC~vvTCt~tt~~~~~~~~~~ 188 (254)
T PF11054_consen 109 FKSLTDEKPDCKEAVDYWKAAFKNFTGLPPSKTAANKLYNDQDNVSFVALYNPSSSATADCRVVTCTQTTSNTAGGSRLQ 188 (254)
T ss_pred eeeccCCCCChHHHHHHHHHHHhhcCCCCCChhhccccccCCcceeEEEEeCCCCCCcceeEEEeCCCCCccCCCccccc
Confidence 22 2346789999999976666664322211110 22234455555555444 56999999641
Q ss_pred -------CeeEEEEEEecCCCC-CCCCCCC
Q 036505 142 -------GTLNFVICNYDPRGN-VFGQHPY 163 (163)
Q Consensus 142 -------~~~~~~vC~Y~p~gN-~~g~~~Y 163 (163)
+..+-++|.=.|..- ..|..|+
T Consensus 189 ~d~~~~~~~gyAliCkT~P~Al~~~~saPF 218 (254)
T PF11054_consen 189 GDSDSESKTGYALICKTMPAALASDGSAPF 218 (254)
T ss_pred CCCcccccceEEEEEecCchhhcCCCCCCC
Confidence 234589999999754 4566664
No 16
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=72.38 E-value=7.6 Score=25.97 Aligned_cols=23 Identities=26% Similarity=0.340 Sum_probs=15.9
Q ss_pred HHHHHHHHhhCCCCCcccCHHHH
Q 036505 29 LKAHNEARASVGVGPMSWVYKLA 51 (163)
Q Consensus 29 L~~hN~~R~~~~m~~L~Wd~~La 51 (163)
.-.||+.|.+.|+.++.-..-|+
T Consensus 19 ~~~~~rRR~r~G~~P~~gt~w~~ 41 (130)
T PF12273_consen 19 FYCHNRRRRRRGLQPIYGTRWMA 41 (130)
T ss_pred HHHHHHHHhhcCCCCcCCceecC
Confidence 34689999988988876443333
No 17
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=68.06 E-value=8.9 Score=26.85 Aligned_cols=39 Identities=8% Similarity=0.160 Sum_probs=25.4
Q ss_pred CCchhHHHHHHHHHHhhccCCCCchHHHHHHHHHHHhhC
Q 036505 1 MPSTSVIFCLLALATIHLSSAHNKPEDYLKAHNEARASV 39 (163)
Q Consensus 1 m~~~~~~~~l~~~~~~~~~~~~~~~~~iL~~hN~~R~~~ 39 (163)
|.++..+++|++.+++.++...+++...++..-++|+.-
T Consensus 1 ~mRvl~i~Lliis~fl~a~~s~~ek~s~~~~~~d~ksi~ 39 (182)
T COG2143 1 VMRVLLIVLLIISLFLSACKSNNEKRSNIDVFDDNKSIS 39 (182)
T ss_pred CcchHHHHHHHHHHHHHHHhCCchhhhhhhhHHHHHhcC
Confidence 455666666666666666666666666677666666553
No 18
>PF02402 Lysis_col: Lysis protein; InterPro: IPR003059 The DNA sequence of the entire colicin E2 operon has been determined []. The operon comprises the colicin activity gene (ceaB), the colicin immunity gene (ceiB) and the lysis gene (celB), which is essential for colicin release from producing cells []. A putative LexA binding site is located upstream from ceaB, and a rho-independent terminator structure is located downstream from celB []. Comparison of the amino acid sequences of colicin E2 and cloacin DF13 reveal extensive similarity. These colicins have different modes of action and recognise different cell surface receptors; the two major regions of heterology at the C terminus, and in the C-terminal end of the central region are thought to correspond to the catalytic and receptor-recognition domains, respectively []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. By contrast, the lysis proteins of the ColE2, ColE1 and CloDF13 plasmids are almost identical except in the N-terminal regions, which themselves are similar to lipoprotein signal peptides []. Processing of the ColE2 prolysis protein to the mature form is prevented by globomycin, a specific inhibitor of the lipoprotein signal peptidase []. The mature ColE2 lysis protein is located in the cell envelope [].; GO: 0009405 pathogenesis, 0019835 cytolysis, 0019867 outer membrane
Probab=66.43 E-value=2.5 Score=22.68 Aligned_cols=22 Identities=18% Similarity=0.084 Sum_probs=11.8
Q ss_pred CCchhHHHHHHHHHHhhccCCC
Q 036505 1 MPSTSVIFCLLALATIHLSSAH 22 (163)
Q Consensus 1 m~~~~~~~~l~~~~~~~~~~~~ 22 (163)
|+++..++++++.+++.++++.
T Consensus 1 MkKi~~~~i~~~~~~L~aCQaN 22 (46)
T PF02402_consen 1 MKKIIFIGIFLLTMLLAACQAN 22 (46)
T ss_pred CcEEEEeHHHHHHHHHHHhhhc
Confidence 6665555444444555555543
No 19
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=65.32 E-value=5.2 Score=25.42 Aligned_cols=8 Identities=25% Similarity=0.538 Sum_probs=3.5
Q ss_pred CCchhHHH
Q 036505 1 MPSTSVIF 8 (163)
Q Consensus 1 m~~~~~~~ 8 (163)
|.+..++|
T Consensus 1 MaSK~~ll 8 (95)
T PF07172_consen 1 MASKAFLL 8 (95)
T ss_pred CchhHHHH
Confidence 55544333
No 20
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=61.73 E-value=5.6 Score=17.04 Aligned_cols=10 Identities=20% Similarity=0.354 Sum_probs=4.1
Q ss_pred CCchhHHHHH
Q 036505 1 MPSTSVIFCL 10 (163)
Q Consensus 1 m~~~~~~~~l 10 (163)
|-++.+|+.+
T Consensus 1 MMk~vIIlvv 10 (19)
T PF13956_consen 1 MMKLVIILVV 10 (19)
T ss_pred CceehHHHHH
Confidence 3344444333
No 21
>PF15240 Pro-rich: Proline-rich
Probab=61.33 E-value=3.7 Score=29.20 Aligned_cols=17 Identities=41% Similarity=0.622 Sum_probs=8.1
Q ss_pred HHHHHHHHHhhccCCCC
Q 036505 7 IFCLLALATIHLSSAHN 23 (163)
Q Consensus 7 ~~~l~~~~~~~~~~~~~ 23 (163)
+++||.+++++-|+|+.
T Consensus 2 LlVLLSvALLALSSAQ~ 18 (179)
T PF15240_consen 2 LLVLLSVALLALSSAQS 18 (179)
T ss_pred hhHHHHHHHHHhhhccc
Confidence 34444444444455554
No 22
>COG3026 RseB Negative regulator of sigma E activity [Signal transduction mechanisms]
Probab=53.98 E-value=26 Score=27.11 Aligned_cols=37 Identities=27% Similarity=0.289 Sum_probs=26.5
Q ss_pred hhHHHHHHHHHHhhccCCCCchHHHHHHHHHHHhhCC
Q 036505 4 TSVIFCLLALATIHLSSAHNKPEDYLKAHNEARASVG 40 (163)
Q Consensus 4 ~~~~~~l~~~~~~~~~~~~~~~~~iL~~hN~~R~~~~ 40 (163)
+++.++++.+++.+.+++++...++|...|+.+.+..
T Consensus 6 ~s~~ll~~sl~~s~~a~ae~~s~~~L~km~~A~~~ln 42 (320)
T COG3026 6 FSLLLLLGSLLLSAAASAESASAAWLQKMNEASQSLN 42 (320)
T ss_pred HHHHHHHHHHhhhhhhhccCccHHHHHHHHHHHHhcC
Confidence 4555555566666666666666699999999988865
No 23
>PF13677 MotB_plug: Membrane MotB of proton-channel complex MotA/MotB
Probab=53.59 E-value=29 Score=19.72 Aligned_cols=27 Identities=15% Similarity=0.190 Sum_probs=10.5
Q ss_pred HHHHHhhccCCCCchHHHHHHHHHHHh
Q 036505 11 LALATIHLSSAHNKPEDYLKAHNEARA 37 (163)
Q Consensus 11 ~~~~~~~~~~~~~~~~~iL~~hN~~R~ 37 (163)
++++++.-+.+.-+.+++-.....++.
T Consensus 29 l~fFVlL~s~s~~d~~k~~~~~~s~~~ 55 (58)
T PF13677_consen 29 LAFFVLLFSMSSVDKEKFEEVAQSFQQ 55 (58)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 333333333333333344444444443
No 24
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=50.36 E-value=24 Score=18.09 Aligned_cols=16 Identities=44% Similarity=0.507 Sum_probs=7.5
Q ss_pred CCchhHHHHHHHHHHh
Q 036505 1 MPSTSVIFCLLALATI 16 (163)
Q Consensus 1 m~~~~~~~~l~~~~~~ 16 (163)
|+-+++.++++++.++
T Consensus 1 Mk~l~~a~~l~lLal~ 16 (36)
T PF08194_consen 1 MKCLSLAFALLLLALA 16 (36)
T ss_pred CceeHHHHHHHHHHHH
Confidence 5666554433333333
No 25
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=47.77 E-value=20 Score=31.25 Aligned_cols=43 Identities=7% Similarity=0.207 Sum_probs=33.7
Q ss_pred cCCCCchHHHHHHHHHHHhhCC----------------------CCCcccCHHHHHHHHHHHHhh
Q 036505 19 SSAHNKPEDYLKAHNEARASVG----------------------VGPMSWVYKLADYSHKHAQKL 61 (163)
Q Consensus 19 ~~~~~~~~~iL~~hN~~R~~~~----------------------m~~L~Wd~~La~~A~~~a~~~ 61 (163)
+..-.+|+++++.+|.-+.... |-.|-||+.|++.|+...-+|
T Consensus 779 qv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~ 843 (901)
T KOG4439|consen 779 QVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRM 843 (901)
T ss_pred ccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHHHHHh
Confidence 3444689999999999777322 557899999999999988844
No 26
>PF04648 MF_alpha: Yeast mating factor alpha hormone; InterPro: IPR006742 This repeated sequence,WHWLQLKPGQPMY, characterises the mating factor alpha-1 or alpha-1 mating pheromone [contains: Mating factor alpha].The hormone is excreted into the culture medium by haploid cells of the alpha mating type and acts on cells of the opposite mating type (type A) by binding to a cognate G-protein coupled receptor which is coupled to a downstream signal transduction pathway. It inhibits DNA synthesis in type A cells synchronising them with type alpha, and so mediates the conjugation process.; GO: 0000772 mating pheromone activity, 0019953 sexual reproduction, 0005576 extracellular region
Probab=45.60 E-value=12 Score=14.59 Aligned_cols=6 Identities=50% Similarity=0.545 Sum_probs=3.8
Q ss_pred CCCCCC
Q 036505 158 FGQHPY 163 (163)
Q Consensus 158 ~g~~~Y 163 (163)
.|||+|
T Consensus 8 ~GqP~Y 13 (13)
T PF04648_consen 8 PGQPMY 13 (13)
T ss_pred CCCcCC
Confidence 367766
No 27
>KOG3017 consensus Defense-related protein containing SCP domain [Function unknown]
Probab=43.06 E-value=22 Score=25.79 Aligned_cols=22 Identities=23% Similarity=0.229 Sum_probs=15.8
Q ss_pred cCCCCchHHHHHHHHHHHhhCC
Q 036505 19 SSAHNKPEDYLKAHNEARASVG 40 (163)
Q Consensus 19 ~~~~~~~~~iL~~hN~~R~~~~ 40 (163)
......+..+++.||++|+.+.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~ 46 (225)
T KOG3017|consen 25 QFDASLVRQILDAHNNLRSEIL 46 (225)
T ss_pred ccCcchhhhhhhhcHHHHHHHH
Confidence 3444556669999999997754
No 28
>PRK10598 lipoprotein; Provisional
Probab=41.69 E-value=35 Score=24.53 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=16.4
Q ss_pred CchHHHHHHHHHHHhhCCCCC
Q 036505 23 NKPEDYLKAHNEARASVGVGP 43 (163)
Q Consensus 23 ~~~~~iL~~hN~~R~~~~m~~ 43 (163)
.+.++.|+.|+.+-.+.|.+-
T Consensus 30 ~Ein~yL~k~~~~~k~~G~~g 50 (186)
T PRK10598 30 QEINQYLAKHNNFEKQIGLPG 50 (186)
T ss_pred HHHHHHHHHhccHHHhcCCCc
Confidence 466778999999999998543
No 29
>PF03207 OspD: Borrelia outer surface protein D (OspD); InterPro: IPR004894 This is a family of outer surface proteins from Borrelia. The function of these proteins is unknown.
Probab=40.01 E-value=58 Score=22.97 Aligned_cols=14 Identities=14% Similarity=0.121 Sum_probs=9.4
Q ss_pred hHHHHHHHHHHHhh
Q 036505 25 PEDYLKAHNEARAS 38 (163)
Q Consensus 25 ~~~iL~~hN~~R~~ 38 (163)
++.||...|++-.+
T Consensus 53 kqsil~elnqll~q 66 (254)
T PF03207_consen 53 KQSILSELNQLLKQ 66 (254)
T ss_pred HHHHHHHHHHHHHH
Confidence 56688887776544
No 30
>TIGR03044 PS_II_psb27 photosystem II protein Psb27. Members of this family are the Psb27 protein of the cyanobacterial photosynthetic supracomplex, photosystem II. Although most protein components of both cyanobacterial and chloroplast versions of photosystem II are closely related and described together by single model families, this family is strictly bacterial. Some uncharacterized proteins with highly divergent sequences, from Arabidopsis, score between trusted and noise cutoffs for this model but are not at this time assigned as functionally equivalent photosystem II proteins.
Probab=38.56 E-value=92 Score=21.15 Aligned_cols=23 Identities=17% Similarity=0.170 Sum_probs=19.7
Q ss_pred CchHHHHHHHHHHHhhCCCCCcc
Q 036505 23 NKPEDYLKAHNEARASVGVGPMS 45 (163)
Q Consensus 23 ~~~~~iL~~hN~~R~~~~m~~L~ 45 (163)
+..++-+...+.+|....++.=.
T Consensus 36 ~Y~~DT~~Vi~tlr~~i~lpkd~ 58 (135)
T TIGR03044 36 DYVEDTLAVIQTLREAIDLPDDD 58 (135)
T ss_pred hHHHHHHHHHHHHHHHHcCCCCC
Confidence 57899999999999999986533
No 31
>PF13605 DUF4141: Domain of unknown function (DUF4141)
Probab=37.26 E-value=60 Score=18.40 Aligned_cols=30 Identities=20% Similarity=0.341 Sum_probs=16.3
Q ss_pred HHHHHHHHHhhccCCC-------CchHHHHHHHHHHH
Q 036505 7 IFCLLALATIHLSSAH-------NKPEDYLKAHNEAR 36 (163)
Q Consensus 7 ~~~l~~~~~~~~~~~~-------~~~~~iL~~hN~~R 36 (163)
++++.++++.+...+| +..+.|++.-++..
T Consensus 6 ~~~~~~~~~~~~a~AQWvV~DP~NlAQ~Iinaa~eiv 42 (55)
T PF13605_consen 6 MLCVACLLLAGPARAQWVVTDPGNLAQNIINAAKEIV 42 (55)
T ss_pred HHHHHHHhcCCcceeEEEEeCchHHHHHHHHHHHHHH
Confidence 3334444555666665 35666766655543
No 32
>PF07312 DUF1459: Protein of unknown function (DUF1459); InterPro: IPR009924 This family consists of several hypothetical Caenorhabditis elegans proteins of around 85 residues in length. The function of this family is unknown.
Probab=35.42 E-value=37 Score=20.75 Aligned_cols=16 Identities=38% Similarity=0.424 Sum_probs=10.2
Q ss_pred CCchhHHHHHHHHHHh
Q 036505 1 MPSTSVIFCLLALATI 16 (163)
Q Consensus 1 m~~~~~~~~l~~~~~~ 16 (163)
|+..+++.+++.+++.
T Consensus 1 MF~Kc~~~l~l~~f~i 16 (84)
T PF07312_consen 1 MFQKCIIVLLLCLFCI 16 (84)
T ss_pred ChHHHHHHHHHHHHHH
Confidence 6777777666655544
No 33
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=33.99 E-value=29 Score=20.36 Aligned_cols=20 Identities=15% Similarity=0.325 Sum_probs=11.4
Q ss_pred CCchhHHHHHHHHHHhhccC
Q 036505 1 MPSTSVIFCLLALATIHLSS 20 (163)
Q Consensus 1 m~~~~~~~~l~~~~~~~~~~ 20 (163)
|+++..+++|+++++.+.-.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (92)
T TIGR02052 1 MKKLATLLALFVLTSLPAWA 20 (92)
T ss_pred ChhHHHHHHHHHHhcchhhh
Confidence 66666666555555554433
No 34
>PF14060 DUF4252: Domain of unknown function (DUF4252)
Probab=33.78 E-value=90 Score=21.13 Aligned_cols=28 Identities=14% Similarity=0.171 Sum_probs=18.7
Q ss_pred HHHHHHHhhCCCCCcccCHHHHHHHHHH
Q 036505 30 KAHNEARASVGVGPMSWVYKLADYSHKH 57 (163)
Q Consensus 30 ~~hN~~R~~~~m~~L~Wd~~La~~A~~~ 57 (163)
...++++..-+...+.-+..+-..+...
T Consensus 26 ~~~~~~~~~~~~~~v~i~~~ml~~~~~~ 53 (155)
T PF14060_consen 26 KYFDKYSENKGVTSVNISKSMLKLASKF 53 (155)
T ss_pred HHHHHhCCCCCeEEEEECHHHHHHHHhc
Confidence 4455777777766677777776666664
No 35
>PF03295 Pox_TAA1: Poxvirus trans-activator protein A1 C-terminal; InterPro: IPR004975 Late transcription factor VLTF-2, acts with RNA polymerase to initiate transcription from late gene promoters [].
Probab=33.69 E-value=48 Score=19.12 Aligned_cols=19 Identities=37% Similarity=0.590 Sum_probs=16.0
Q ss_pred CchHHHHHHHHHHHhhCCC
Q 036505 23 NKPEDYLKAHNEARASVGV 41 (163)
Q Consensus 23 ~~~~~iL~~hN~~R~~~~m 41 (163)
+..+++++.+|.+|++-|.
T Consensus 24 ~~Pe~Vi~iIN~lR~keGv 42 (63)
T PF03295_consen 24 EDPEEVINIINELRNKEGV 42 (63)
T ss_pred cCHHHHHHHHHHhhhccCc
Confidence 3578899999999998874
No 36
>PF15284 PAGK: Phage-encoded virulence factor
Probab=32.96 E-value=37 Score=19.60 Aligned_cols=11 Identities=36% Similarity=0.395 Sum_probs=5.3
Q ss_pred CCchhHHHHHH
Q 036505 1 MPSTSVIFCLL 11 (163)
Q Consensus 1 m~~~~~~~~l~ 11 (163)
|+++--++|.+
T Consensus 1 Mkk~ksifL~l 11 (61)
T PF15284_consen 1 MKKFKSIFLAL 11 (61)
T ss_pred ChHHHHHHHHH
Confidence 56554444433
No 37
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=29.33 E-value=1.5e+02 Score=24.51 Aligned_cols=16 Identities=6% Similarity=-0.066 Sum_probs=12.7
Q ss_pred CHHHHHHHHHHHHhhc
Q 036505 47 VYKLADYSHKHAQKLK 62 (163)
Q Consensus 47 d~~La~~A~~~a~~~~ 62 (163)
++++.+++|+.|+.-.
T Consensus 82 ~d~~~~~~qqiAn~~l 97 (514)
T PF11336_consen 82 NDDATEMRQQIANAQL 97 (514)
T ss_pred hHHHHHHHHHHHhhhh
Confidence 7889999999888443
No 38
>PF11903 DUF3423: Protein of unknown function (DUF3423); InterPro: IPR021831 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 73 to 118 amino acids in length.
Probab=29.10 E-value=89 Score=18.73 Aligned_cols=20 Identities=20% Similarity=0.257 Sum_probs=17.7
Q ss_pred CCCcccCHHHHHHHHHHHHh
Q 036505 41 VGPMSWVYKLADYSHKHAQK 60 (163)
Q Consensus 41 m~~L~Wd~~La~~A~~~a~~ 60 (163)
|.+++-|++|-+.|+..+..
T Consensus 1 ~~~vri~~~L~~~ar~~a~~ 20 (72)
T PF11903_consen 1 MGSVRISDELHDQARAEAAA 20 (72)
T ss_pred CCCeeeCHHHHHHHHHHHHH
Confidence 67889999999999999984
No 39
>PF10855 DUF2648: Protein of unknown function (DUF2648); InterPro: IPR022561 This family of proteins with unknown function appears to be restricted to eubacteia.
Probab=28.77 E-value=32 Score=17.07 Aligned_cols=15 Identities=27% Similarity=0.239 Sum_probs=8.2
Q ss_pred CCchhHHHHHHHHHH
Q 036505 1 MPSTSVIFCLLALAT 15 (163)
Q Consensus 1 m~~~~~~~~l~~~~~ 15 (163)
|+++.+++.+..+.+
T Consensus 1 MKkl~i~L~l~ga~f 15 (33)
T PF10855_consen 1 MKKLAIILILGGAAF 15 (33)
T ss_pred CCceeehhhhhhHHH
Confidence 677666654444333
No 40
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=28.56 E-value=70 Score=18.71 Aligned_cols=9 Identities=33% Similarity=0.316 Sum_probs=5.4
Q ss_pred HHHHHHHHH
Q 036505 27 DYLKAHNEA 35 (163)
Q Consensus 27 ~iL~~hN~~ 35 (163)
+-|...|.+
T Consensus 28 ealkY~N~y 36 (66)
T PF07438_consen 28 EALKYMNDY 36 (66)
T ss_pred HHHHHHHHH
Confidence 456666665
No 41
>PF11839 DUF3359: Protein of unknown function (DUF3359); InterPro: IPR021793 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 80 amino acids in length.
Probab=28.56 E-value=1.6e+02 Score=18.77 Aligned_cols=22 Identities=14% Similarity=-0.032 Sum_probs=12.0
Q ss_pred CCchhHHHHHHHHHHhhccCCC
Q 036505 1 MPSTSVIFCLLALATIHLSSAH 22 (163)
Q Consensus 1 m~~~~~~~~l~~~~~~~~~~~~ 22 (163)
|.++.+..+++.++++.+|.+.
T Consensus 1 M~k~l~sal~~~~~L~~GCAst 22 (96)
T PF11839_consen 1 MKKLLLSALALAALLLAGCAST 22 (96)
T ss_pred CchHHHHHHHHHHHHHhHccCC
Confidence 6666655555555555445443
No 42
>PRK10318 hypothetical protein; Provisional
Probab=27.62 E-value=1.5e+02 Score=19.69 Aligned_cols=15 Identities=0% Similarity=-0.195 Sum_probs=6.1
Q ss_pred hhccCCCCchHHHHH
Q 036505 16 IHLSSAHNKPEDYLK 30 (163)
Q Consensus 16 ~~~~~~~~~~~~iL~ 30 (163)
+..+.+....++...
T Consensus 16 ~~~~~~~~~~~~ei~ 30 (121)
T PRK10318 16 AYAKLTAHEEARINA 30 (121)
T ss_pred HHhccCChhHHHHHH
Confidence 333444444444333
No 43
>COG1318 Predicted transcriptional regulators [Transcription]
Probab=27.08 E-value=55 Score=23.26 Aligned_cols=20 Identities=25% Similarity=0.338 Sum_probs=17.6
Q ss_pred CCCcccCHHHHHHHHHHHHh
Q 036505 41 VGPMSWVYKLADYSHKHAQK 60 (163)
Q Consensus 41 m~~L~Wd~~La~~A~~~a~~ 60 (163)
..+|+|.+.||..|-..|+.
T Consensus 39 ~~~lTWvdSLavAAga~are 58 (182)
T COG1318 39 YERLTWVDSLAVAAGALARE 58 (182)
T ss_pred ccccchhhHHHHHHHHHHHH
Confidence 45899999999999998883
No 44
>PF03032 Brevenin: Brevenin/esculentin/gaegurin/rugosin family; InterPro: IPR004275 In addition to the highly specific cell-mediated immune system, vertebrates possess an efficient host-defence mechanism against invading microorganisms which involves the synthesis of highly potent antimicrobial peptides with a large spectrum of activity. This entry represents a number of these defence peptides secreted from the skin of amphibians, including the opiate-like dermorphins and deltorphins, and the antimicrobial dermoseptins and temporins.; GO: 0006952 defense response, 0042742 defense response to bacterium, 0005576 extracellular region
Probab=26.98 E-value=38 Score=18.41 Aligned_cols=11 Identities=9% Similarity=0.174 Sum_probs=4.5
Q ss_pred hHHHHHHHHHH
Q 036505 5 SVIFCLLALAT 15 (163)
Q Consensus 5 ~~~~~l~~~~~ 15 (163)
++++++++.++
T Consensus 6 sllLlfflG~I 16 (46)
T PF03032_consen 6 SLLLLFFLGTI 16 (46)
T ss_pred HHHHHHHHHHc
Confidence 34444444443
No 45
>TIGR00547 lolA periplasmic chaperone LolA. This protein, LolA, is known so far only in the gamma and beta subdivisions of the Proteobacteria. The E. coli major outer lipoprotein (Lpp) of E. coli is released from the inner membrane as a complex with this chaperone in an energy-requiring process, and is then delivered to LolB for insertion into the outer membrane. LolA is involved in the delivery of lipoproteins generally, rather than just Lpp, and is an essential protein in E. coli, unlike Lpp itself.
Probab=26.71 E-value=66 Score=23.33 Aligned_cols=39 Identities=10% Similarity=0.042 Sum_probs=17.1
Q ss_pred CCchhHHHHHHHHHHhhccCCCCchHHHHHHHHHHHhhC
Q 036505 1 MPSTSVIFCLLALATIHLSSAHNKPEDYLKAHNEARASV 39 (163)
Q Consensus 1 m~~~~~~~~l~~~~~~~~~~~~~~~~~iL~~hN~~R~~~ 39 (163)
|+++.++++|++++.++.+..++..+.+-+..|.+++.-
T Consensus 1 mkk~~~~~~l~~~~~~~~~~~a~~~~~L~~~l~~~~s~~ 39 (204)
T TIGR00547 1 MKKIAIKCAALSLLGLANLALADAASDLKMRLAKVDSFH 39 (204)
T ss_pred CchHHHHHHHHHHhhhhhhhhhhHHHHHHHHHhhhCeeE
Confidence 666665544443220232333444444444444444443
No 46
>TIGR03474 incFII_RepA incFII family plasmid replication initiator RepA. Members of this protein are the plasmid replication initiator RepA of incFII (plasmid incompatibility group F-II) plasmids. R1 and R100 are plasmids in this group. Immediately upstream of repA is found tap, a leader peptide of about 24 amino acids, often not assigned as a gene in annotated plasmid sequences. Note that other, non-homologous plasmid replication proteins share the gene symbol (repA) and similar names (plasmid replication protein RepA).
Probab=26.05 E-value=36 Score=25.51 Aligned_cols=31 Identities=13% Similarity=0.125 Sum_probs=25.9
Q ss_pred CchHHHHHHHHHHHhhCCCCCcccCHHHHHH
Q 036505 23 NKPEDYLKAHNEARASVGVGPMSWVYKLADY 53 (163)
Q Consensus 23 ~~~~~iL~~hN~~R~~~~m~~L~Wd~~La~~ 53 (163)
..+++=|.-.|+-|.+-|++||+-++.+++.
T Consensus 159 ~A~~qql~W~Nk~l~kkGl~pltl~Eai~~a 189 (275)
T TIGR03474 159 AARRSRVEWENKQRKKQGLDTLEMDELIAKA 189 (275)
T ss_pred HHHHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 4577778999999999999999988776654
No 47
>PRK13750 replication protein; Provisional
Probab=25.97 E-value=38 Score=25.58 Aligned_cols=31 Identities=13% Similarity=0.118 Sum_probs=25.9
Q ss_pred CchHHHHHHHHHHHhhCCCCCcccCHHHHHH
Q 036505 23 NKPEDYLKAHNEARASVGVGPMSWVYKLADY 53 (163)
Q Consensus 23 ~~~~~iL~~hN~~R~~~~m~~L~Wd~~La~~ 53 (163)
..+++=|.-.|+-|.+-|++||+-++.+++.
T Consensus 167 ~A~~qql~W~Nk~l~kkGl~pltl~Eai~~a 197 (285)
T PRK13750 167 AARRSRVEWENRQRKKQGLDTLGMDELIAKA 197 (285)
T ss_pred HHHHHHHHHHHHHHHhcCCCCccHHHHHHHH
Confidence 4577778999999999999999988776653
No 48
>PF04202 Mfp-3: Foot protein 3; InterPro: IPR007328 Mytilus foot protein-3 (Mfp-3) is a highly polymorphic protein family located in the byssal adhesive plaques of blue mussels.
Probab=25.92 E-value=73 Score=18.75 Aligned_cols=10 Identities=30% Similarity=0.338 Sum_probs=5.2
Q ss_pred CCchhHHHHH
Q 036505 1 MPSTSVIFCL 10 (163)
Q Consensus 1 m~~~~~~~~l 10 (163)
|..+++.+||
T Consensus 1 mnn~Si~VLl 10 (71)
T PF04202_consen 1 MNNLSIAVLL 10 (71)
T ss_pred CCchhHHHHH
Confidence 5566555433
No 49
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=25.61 E-value=49 Score=25.77 Aligned_cols=34 Identities=21% Similarity=0.411 Sum_probs=20.2
Q ss_pred HHHHHhcCeeeEEEEEeCCCCeeEEEEEEecCCCCCC
Q 036505 122 QVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVF 158 (163)
Q Consensus 122 q~vw~~~~~vGCa~~~c~~~~~~~~~vC~Y~p~gN~~ 158 (163)
-+||++-|.-=-....=+. .. ++.|.|+|.||..
T Consensus 79 lIvWDs~TtnK~haipl~s-~W--VMtCA~sPSg~~V 112 (343)
T KOG0286|consen 79 LIVWDSFTTNKVHAIPLPS-SW--VMTCAYSPSGNFV 112 (343)
T ss_pred EEEEEcccccceeEEecCc-ee--EEEEEECCCCCeE
Confidence 4677766643222222111 33 8999999999864
No 50
>PF04863 EGF_alliinase: Alliinase EGF-like domain; InterPro: IPR006947 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species. Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A.
Probab=24.42 E-value=84 Score=17.80 Aligned_cols=16 Identities=25% Similarity=0.509 Sum_probs=14.0
Q ss_pred cccCHHHHHHHHHHHH
Q 036505 44 MSWVYKLADYSHKHAQ 59 (163)
Q Consensus 44 L~Wd~~La~~A~~~a~ 59 (163)
|+|...-++.|+..|.
T Consensus 1 l~Wt~~Aa~eAeavAa 16 (56)
T PF04863_consen 1 LSWTLRAAEEAEAVAA 16 (56)
T ss_dssp -STTHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHhhc
Confidence 6899999999999887
No 51
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=24.05 E-value=92 Score=14.37 Aligned_cols=7 Identities=29% Similarity=0.420 Sum_probs=2.7
Q ss_pred hhHHHHH
Q 036505 4 TSVIFCL 10 (163)
Q Consensus 4 ~~~~~~l 10 (163)
+.+++.|
T Consensus 6 FalivVL 12 (24)
T PF09680_consen 6 FALIVVL 12 (24)
T ss_pred chhHHHH
Confidence 3344333
No 52
>PF12393 Dr_adhesin: Dr family adhesin ; InterPro: IPR021020 The Dr family of adhesins bind to the Dr blood group antigen component of decay-accelerating factor. These proteins contain both fimbriated and afimbriated adherence structures and mediate adherence of uropathogenic Escherichia coli to the urinary tract []. They also confer the mannose-resistant hemagglutination phenotype, which can be inhibited by chloramphenicol. The N-terminal portion of the mature protein is thought to be responsible for chloramphenicol sensitivity []. This entry represents the signal peptide region necessary for protein secretion to the cell surface.
Probab=24.03 E-value=85 Score=13.97 Aligned_cols=18 Identities=6% Similarity=0.146 Sum_probs=8.1
Q ss_pred CCchhHHHHHHHHHHhhc
Q 036505 1 MPSTSVIFCLLALATIHL 18 (163)
Q Consensus 1 m~~~~~~~~l~~~~~~~~ 18 (163)
|+++.+.......+++++
T Consensus 1 MKklaiMaa~s~~~~v~t 18 (21)
T PF12393_consen 1 MKKLAIMAAASMMTAVGT 18 (21)
T ss_pred CchHHHHHHHHHHHHhcc
Confidence 555554443334444443
No 53
>PF10614 CsgF: Type VIII secretion system (T8SS), CsgF protein; InterPro: IPR018893 Fimbriae are cell-surface protein polymers, of e.g. Escherichia coli and Salmonella spp, that mediate interactions important for host and environmental persistence, development of biofilms, motility, colonisation and invasion of cells, and conjugation. Four general assembly pathways for different fimbriae have been proposed, one of which is extracellular nucleation-precipitation (ENP), that differs from the others in that fibre-growth occurs extracellularly. Thin aggregative fimbriae (Tafi) are the only fimbriae dependent on the ENP pathway. Tafi were first identified in Salmonella spp. and the controlling operon termed agf; however subsequent isolation of the homologous operon in E. coli led to its being called csg. Tafi are known as curli because, in the absence of extracellular polysaccharides, their morphology appears curled; however, when expressed with such polysaccharides their morphology appears as a tangled amorphous matrix []. CsgF is one of three putative curli assembly factors appearing to act as a nucleator protein. Unlike eukaryotic amyloid formation, curli biogenesis is a productive pathway requiring a specific assembly machinery [].
Probab=23.93 E-value=51 Score=22.60 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=13.0
Q ss_pred CCchhHHHHHHHHHHhhccCCCC
Q 036505 1 MPSTSVIFCLLALATIHLSSAHN 23 (163)
Q Consensus 1 m~~~~~~~~l~~~~~~~~~~~~~ 23 (163)
|++..++.+|++++..+.+.|++
T Consensus 1 mk~~~l~a~l~~~~~~~~a~A~e 23 (142)
T PF10614_consen 1 MKYRGLLALLLLLLAASSAQAQE 23 (142)
T ss_pred CcEeHHHHHHHHHHcccccchhh
Confidence 67666655555555455555553
No 54
>PTZ00264 circumsporozoite-related antigen; Provisional
Probab=23.12 E-value=73 Score=21.20 Aligned_cols=21 Identities=19% Similarity=0.184 Sum_probs=12.1
Q ss_pred CCchhHHHHHHHHHHhhccCC
Q 036505 1 MPSTSVIFCLLALATIHLSSA 21 (163)
Q Consensus 1 m~~~~~~~~l~~~~~~~~~~~ 21 (163)
|+.++.+++|+++++..-+..
T Consensus 1 mkils~vFllF~~il~~~a~g 21 (148)
T PTZ00264 1 MKLLSAVFLLFCAILCKHALG 21 (148)
T ss_pred ChHHHHHHHHHHHHHhHHhhc
Confidence 565666666666666544443
No 55
>PRK04561 tatA twin arginine translocase protein A; Provisional
Probab=22.47 E-value=1.9e+02 Score=17.49 Aligned_cols=34 Identities=12% Similarity=0.161 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhhccCCCCchHHHHHHHHHHHhhC
Q 036505 6 VIFCLLALATIHLSSAHNKPEDYLKAHNEARASV 39 (163)
Q Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~iL~~hN~~R~~~ 39 (163)
+++++++++++.+.--.+--+.+=.....+|...
T Consensus 10 lIIlvIvlLlFG~~KLPel~r~lGk~ik~FKk~~ 43 (75)
T PRK04561 10 LVVLVIVLLVFGTKRLTSGAKDLGSAVKEFKKGM 43 (75)
T ss_pred HHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHh
Confidence 3344445555554444455555666666666543
No 56
>PRK14859 tatA twin arginine translocase protein A; Provisional
Probab=22.42 E-value=1.2e+02 Score=17.69 Aligned_cols=32 Identities=6% Similarity=0.013 Sum_probs=16.2
Q ss_pred HHHHHHHHhhccCCCCchHHHHHHHHHHHhhC
Q 036505 8 FCLLALATIHLSSAHNKPEDYLKAHNEARASV 39 (163)
Q Consensus 8 ~~l~~~~~~~~~~~~~~~~~iL~~hN~~R~~~ 39 (163)
+++++++++.+.--.+.-..+=.....+|...
T Consensus 12 Ilvv~LlvfGp~kLP~l~r~lGk~i~~frk~~ 43 (63)
T PRK14859 12 ILVIVLIVFGAGKLPEIGGGLGKSIKNFKKAT 43 (63)
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444333344555666666666543
No 57
>PF11254 DUF3053: Protein of unknown function (DUF3053); InterPro: IPR021413 Some members in this family of proteins are annotated as the membrane protein YiaF. No function is currently known.
Probab=22.33 E-value=2.9e+02 Score=20.68 Aligned_cols=43 Identities=12% Similarity=0.193 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHhhccCCC--CchHHHHHHHHH--HHh-hCCCCCcccC
Q 036505 5 SVIFCLLALATIHLSSAH--NKPEDYLKAHNE--ARA-SVGVGPMSWV 47 (163)
Q Consensus 5 ~~~~~l~~~~~~~~~~~~--~~~~~iL~~hN~--~R~-~~~m~~L~Wd 47 (163)
.-++.++..+.++.|... +.|+.+++.... .|+ .+.+|.|+=+
T Consensus 5 ~p~~al~~~l~LagCgdKEpeQR~AFi~fLQ~~i~~~~g~~vp~Lte~ 52 (229)
T PF11254_consen 5 RPLLALLMVLQLAGCGDKEPEQRKAFIDFLQNRIMRSPGVRVPTLTED 52 (229)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHH
Confidence 334445555556666665 367777786655 677 5668888633
No 58
>PF08557 Lipid_DES: Sphingolipid Delta4-desaturase (DES); InterPro: IPR013866 Sphingolipids are important membrane signalling molecules involved in many different cellular functions in eukaryotes. Sphingolipid delta 4-desaturase catalyses the formation of (E)-sphing-4-enine []. Some proteins in this entry have bifunctional delta 4-desaturase/C-4-hydroxylase activity. Delta 4-desaturated sphingolipids may play a role in early signalling required for entry into meiotic and spermatid differentiation pathways during Drosophila spermatogenesis []. This small protein associates with FA_desaturase IPR005804 from INTERPRO and appears to be specific to sphingolipid delta 4-desaturase. ; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0006633 fatty acid biosynthetic process, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=22.03 E-value=96 Score=16.21 Aligned_cols=22 Identities=27% Similarity=0.572 Sum_probs=17.8
Q ss_pred CchHHHHHHHHHHHhhCCCCCc
Q 036505 23 NKPEDYLKAHNEARASVGVGPM 44 (163)
Q Consensus 23 ~~~~~iL~~hN~~R~~~~m~~L 44 (163)
.-|++||..|=+++...|-.|+
T Consensus 17 ~RRk~IL~k~PeIk~L~G~dp~ 38 (39)
T PF08557_consen 17 SRRKEILKKHPEIKKLMGPDPL 38 (39)
T ss_pred HHHHHHHHhChHHHHHhCCCCC
Confidence 3578899999999998886654
No 59
>PF13983 YsaB: YsaB-like lipoprotein
Probab=21.63 E-value=66 Score=19.13 Aligned_cols=12 Identities=25% Similarity=0.766 Sum_probs=9.9
Q ss_pred EEEEEecCCCCC
Q 036505 146 FVICNYDPRGNV 157 (163)
Q Consensus 146 ~~vC~Y~p~gN~ 157 (163)
-+||-|+|.|-.
T Consensus 60 ~FvCSFD~dGqF 71 (77)
T PF13983_consen 60 GFVCSFDADGQF 71 (77)
T ss_pred ceEEeECCCCcE
Confidence 689999998753
No 60
>PF11153 DUF2931: Protein of unknown function (DUF2931); InterPro: IPR021326 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed. Currently, there is no known function.
Probab=21.30 E-value=84 Score=22.86 Aligned_cols=8 Identities=13% Similarity=0.322 Sum_probs=4.2
Q ss_pred CCchhHHH
Q 036505 1 MPSTSVIF 8 (163)
Q Consensus 1 m~~~~~~~ 8 (163)
|+++++++
T Consensus 1 mk~i~~l~ 8 (216)
T PF11153_consen 1 MKKILLLL 8 (216)
T ss_pred ChHHHHHH
Confidence 55555444
No 61
>PRK09810 entericidin A; Provisional
Probab=21.11 E-value=1e+02 Score=16.32 Aligned_cols=6 Identities=33% Similarity=0.213 Sum_probs=2.4
Q ss_pred CCchhH
Q 036505 1 MPSTSV 6 (163)
Q Consensus 1 m~~~~~ 6 (163)
|+++..
T Consensus 2 Mkk~~~ 7 (41)
T PRK09810 2 MKRLIV 7 (41)
T ss_pred hHHHHH
Confidence 444333
No 62
>PRK00575 tatA twin arginine translocase protein A; Provisional
Probab=20.98 E-value=1.3e+02 Score=19.05 Aligned_cols=33 Identities=9% Similarity=0.108 Sum_probs=17.9
Q ss_pred HHHHHHHHHhhccCCCCchHHHHHHHHHHHhhC
Q 036505 7 IFCLLALATIHLSSAHNKPEDYLKAHNEARASV 39 (163)
Q Consensus 7 ~~~l~~~~~~~~~~~~~~~~~iL~~hN~~R~~~ 39 (163)
++++++++++.+.--.+.-+.+=...+.+|+..
T Consensus 11 iIlvi~LllFGpkKLPel~r~lGk~ir~fK~a~ 43 (92)
T PRK00575 11 ILAVVVILLFGAKKLPDAARSLGKSLRIFKSEV 43 (92)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444433445556666777777644
No 63
>COG1019 Predicted nucleotidyltransferase [General function prediction only]
Probab=20.70 E-value=76 Score=22.10 Aligned_cols=17 Identities=29% Similarity=0.411 Sum_probs=14.8
Q ss_pred HHHHHHHHhhCCCCCcc
Q 036505 29 LKAHNEARASVGVGPMS 45 (163)
Q Consensus 29 L~~hN~~R~~~~m~~L~ 45 (163)
-..+|+.|.+.|++||+
T Consensus 106 Al~IN~~R~~~Gl~pL~ 122 (158)
T COG1019 106 ALKINEIREKRGLPPLE 122 (158)
T ss_pred HHHHHHHHHHCCCCCeE
Confidence 45689999999999986
No 64
>cd02164 PPAT_CoAS phosphopantetheine adenylyltransferase domain of eukaryotic and archaeal bifunctional enzymes. The PPAT domain of the bifunctional enzyme with PPAT and DPCK functions. The final two steps of the CoA biosynthesis pathway are catalyzed by phosphopantetheine adenylyltransferase (PPAT) and dephospho-CoA (dPCoA) kinase (DPCK). The PPAT reaction involves the reversible adenylation of 4'-phosphopantetheine to form 3'-dPCoA and PPi, and DPCK catalyses phosphorylation of the 3'-hydroxy group of the ribose moiety of dPCoA. In eukaryotes the two enzymes are part of a large multienzyme complex . Studies in Corynebacterium ammoniagenes suggested that separate enzymes were present, and this was confirmed through identification of the bacterial PPAT/CoAD.
Probab=20.54 E-value=82 Score=21.46 Aligned_cols=19 Identities=21% Similarity=0.270 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhhCCCCCcc
Q 036505 27 DYLKAHNEARASVGVGPMS 45 (163)
Q Consensus 27 ~iL~~hN~~R~~~~m~~L~ 45 (163)
.--..+|+.|...|++||.
T Consensus 101 ~~~~~iN~~R~~~gl~pl~ 119 (143)
T cd02164 101 PGALKINRKREENGLSPLE 119 (143)
T ss_pred hhHHHHHHHHHHCCCCcee
Confidence 3467899999999999885
No 65
>PRK02958 tatA twin arginine translocase protein A; Provisional
Probab=20.14 E-value=1.6e+02 Score=17.74 Aligned_cols=32 Identities=13% Similarity=0.067 Sum_probs=17.9
Q ss_pred HHHHHHHHHhhccCCCCchHHHHHHHHHHHhh
Q 036505 7 IFCLLALATIHLSSAHNKPEDYLKAHNEARAS 38 (163)
Q Consensus 7 ~~~l~~~~~~~~~~~~~~~~~iL~~hN~~R~~ 38 (163)
++++++++++.+.--.+--+.+=...+.+|..
T Consensus 11 iIl~IvlllFG~kKLPelgr~lGkair~FK~~ 42 (73)
T PRK02958 11 IVLVIVVLVFGTKKLRNIGSDLGGAVKGFKDG 42 (73)
T ss_pred HHHHHHHHHhCcchHHHHHHHHHHHHHHHHHH
Confidence 34444455555444444555666677777763
No 66
>PRK00191 tatA twin arginine translocase protein A; Provisional
Probab=20.02 E-value=1.4e+02 Score=18.47 Aligned_cols=33 Identities=12% Similarity=0.135 Sum_probs=18.7
Q ss_pred HHHHHHHHHhhccCCCCchHHHHHHHHHHHhhC
Q 036505 7 IFCLLALATIHLSSAHNKPEDYLKAHNEARASV 39 (163)
Q Consensus 7 ~~~l~~~~~~~~~~~~~~~~~iL~~hN~~R~~~ 39 (163)
++++++++++.+.--.+.-..+-.....+|+..
T Consensus 10 iI~vI~lllFGp~KLP~~~r~lGk~ir~FK~~~ 42 (84)
T PRK00191 10 IIVLLIIVLFGAKKLPDAARSIGRSMRIFKSEV 42 (84)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 344445555554444455566666777777644
Done!