BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036506
(86 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 62.4 bits (150), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 32/48 (66%)
Query: 12 CTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVAI 59
C VCL + DG++ R LP C H FH EC+D W S STCPLCR+ V +
Sbjct: 8 CAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVVV 55
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 12 CTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEV 57
CT+CL + +G+ RRLP C H FH C+D W + CP+CR+++
Sbjct: 17 CTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDI 61
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 43.1 bits (100), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 12 CTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVA 58
C VC+ Q R LP C H FH +C+D W ++ TCP+CR +
Sbjct: 26 CVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSG 71
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 12 CTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCR 54
C VC + + G+ R+LP C H FH CI W + +CP+CR
Sbjct: 18 CPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCR 59
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 38.5 bits (88), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 11 YCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEV 57
C VCL+ + P CKH FH +C+ W + R CPLC + V
Sbjct: 17 LCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPV 62
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 12 CTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCR 54
C +C G LP C H FH C+ W Q TCP+CR
Sbjct: 43 CPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCR 84
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 12 CTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVAIVI 61
C +CL+ D + C H F CI W + TCPLC++ V V+
Sbjct: 8 CPICLE---DPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESVV 54
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 12 CTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEV 57
C +C+DG +D + C H F +CID W CP+CR+++
Sbjct: 18 CCICMDGRAD-----LILPCAHSFCQKCIDKWSDRHRNCPICRLQM 58
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 33.9 bits (76), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 12 CTVCLDGISDGQKFRRL---PECKHCFHVECIDAWFQSRSTCPLCRIEV 57
C +C+DG S+ + RL EC H F +C+ ++ +TCP CR ++
Sbjct: 10 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 58
Score = 33.9 bits (76), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 12 CTVCLDGISDGQKFRRL---PECKHCFHVECIDAWFQSRSTCPLCRIEV 57
C +C+DG S+ + RL EC H F +C+ ++ +TCP CR ++
Sbjct: 75 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 123
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 33.9 bits (76), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 12 CTVCLDGISDGQKFRRL---PECKHCFHVECIDAWFQSRSTCPLCRIEV 57
C +C+DG S+ + RL EC H F +C+ ++ +TCP CR ++
Sbjct: 6 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 54
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 12 CTVCLDGISDGQKFRRL---PECKHCFHVECIDAWFQSRSTCPLCRIEV 57
C +C+DG S+ + RL EC H F +C+ ++ +TCP CR ++
Sbjct: 13 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 61
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 12 CTVCLDGISDGQKFRRL---PECKHCFHVECIDAWFQSRSTCPLCRIEV 57
C +C+DG S+ + RL EC H F +C+ ++ +TCP CR ++
Sbjct: 18 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 66
>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 117
Score = 32.3 bits (72), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 31 CKHCFHVECIDAWFQSRSTCPL 52
C H FH CI W ++R CPL
Sbjct: 84 CNHAFHFHCISRWLKTRQVCPL 105
>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 108
Score = 32.0 bits (71), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 31 CKHCFHVECIDAWFQSRSTCPL 52
C H FH CI W ++R CPL
Sbjct: 75 CNHAFHFHCISRWLKTRQVCPL 96
>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp
Abasic Site Containing Dna-Duplex
pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp
Abasic Site Containing Dna-Duplex
Length = 98
Score = 32.0 bits (71), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 31 CKHCFHVECIDAWFQSRSTCPL 52
C H FH CI W ++R CPL
Sbjct: 65 CNHAFHFHCISRWLKTRQVCPL 86
>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation.
pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 106
Score = 32.0 bits (71), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 31 CKHCFHVECIDAWFQSRSTCPL 52
C H FH CI W ++R CPL
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPL 94
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 32.0 bits (71), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 31 CKHCFHVECIDAWFQSRSTCPL 52
C H FH CI W ++R CPL
Sbjct: 67 CNHAFHFHCISRWLKTRQVCPL 88
>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 106
Score = 32.0 bits (71), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 31 CKHCFHVECIDAWFQSRSTCPL 52
C H FH CI W ++R CPL
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPL 94
>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 90
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 31 CKHCFHVECIDAWFQSRSTCPL 52
C H FH CI W ++R CPL
Sbjct: 57 CNHAFHFHCISRWLKTRQVCPL 78
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 30.0 bits (66), Expect = 0.31, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 12 CTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRST-CPLCRIEV 57
C +C ++ K ++ C H C+ +W +S CP CR E+
Sbjct: 337 CKIC----AENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 379
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 30.0 bits (66), Expect = 0.32, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 12 CTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRST-CPLCRIEV 57
C +C ++ K ++ C H C+ +W +S CP CR E+
Sbjct: 337 CKIC----AENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 379
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 30.0 bits (66), Expect = 0.34, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 12 CTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRST-CPLCRIEV 57
C +C ++ K ++ C H C+ +W +S CP CR E+
Sbjct: 335 CKIC----AENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 377
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 30.0 bits (66), Expect = 0.36, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 12 CTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRST-CPLCRIEV 57
C +C ++ K ++ C H C+ +W +S CP CR E+
Sbjct: 335 CKIC----AENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 377
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 29.3 bits (64), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 30 ECKHCFHVECIDAWFQSRSTCPLCRIEVAI 59
EC H FH C+ W + + CPLC+ + +
Sbjct: 47 ECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76
>pdb|3I2D|A Chain A, Crystal Structure Of S. Cerevisiae Sumo E3 Ligase Siz1
Length = 371
Score = 29.3 bits (64), Expect = 0.64, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 7/34 (20%)
Query: 33 HCFHVECIDA-WFQSRS------TCPLCRIEVAI 59
+C H++C DA WF CP+C+I++A+
Sbjct: 267 NCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIAL 300
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 12 CTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLC 53
C +CL+ I + + C H H C + + CPLC
Sbjct: 8 CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 31 CKHCFHVECIDAWFQSRSTCPLCRIEV 57
C H F CI+ W + + CP+CR ++
Sbjct: 71 CAHSFCSYCINEWMKRKIECPICRKDI 97
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 31 CKHCFHVECIDAWFQSRSTCPLCRIEV 57
C H F CI+ W + + CP+CR ++
Sbjct: 82 CAHSFCSYCINEWMKRKIECPICRKDI 108
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 31 CKHCFHVECIDAWFQSRSTCPLCRIEV 57
C H F CI+ W + + CP+CR ++
Sbjct: 71 CAHSFCSYCINEWMKRKIECPICRKDI 97
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From
Mus Musculus
Length = 55
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 12 CTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLC 53
C +CL+ I + + C H H C + + CPLC
Sbjct: 8 CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
>pdb|3RPG|B Chain B, Bmi1RING1B-Ubch5c Complex Structure
Length = 117
Score = 25.4 bits (54), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 30 ECKHCFHVECIDAWFQSRSTCPLCRIEV 57
EC H F CI + ++ CP+C ++V
Sbjct: 33 ECLHSFCKTCIVRYLETSKYCPICDVQV 60
>pdb|2CKL|A Chain A, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 108
Score = 25.4 bits (54), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 30 ECKHCFHVECIDAWFQSRSTCPLCRIEV 57
EC H F CI + ++ CP+C ++V
Sbjct: 33 ECLHSFCKTCIVRYLETSKYCPICDVQV 60
>pdb|2H0D|A Chain A, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 97
Score = 25.4 bits (54), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 30 ECKHCFHVECIDAWFQSRSTCPLCRIEV 57
EC H F CI + ++ CP+C ++V
Sbjct: 29 ECLHSFCKTCIVRYLETSKYCPICDVQV 56
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 25.0 bits (53), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 20 SDGQKFRRLPECKHCFHVECIDAWFQSRS-TCPLCRIEV 57
++ K ++ C H C+ AW +S CP CR E+
Sbjct: 33 AENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCRCEI 71
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.330 0.138 0.500
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,111,037
Number of Sequences: 62578
Number of extensions: 60326
Number of successful extensions: 200
Number of sequences better than 100.0: 57
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 159
Number of HSP's gapped (non-prelim): 59
length of query: 86
length of database: 14,973,337
effective HSP length: 54
effective length of query: 32
effective length of database: 11,594,125
effective search space: 371012000
effective search space used: 371012000
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 45 (21.9 bits)