Query 036506
Match_columns 86
No_of_seqs 149 out of 1321
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 02:45:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036506.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036506hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13639 zf-RING_2: Ring finge 99.7 1.5E-18 3.3E-23 87.3 2.3 43 11-54 2-44 (44)
2 KOG4628 Predicted E3 ubiquitin 99.6 1.1E-16 2.3E-21 109.8 4.0 53 10-63 230-283 (348)
3 PF12678 zf-rbx1: RING-H2 zinc 99.6 2.7E-15 5.9E-20 83.0 3.7 45 9-54 19-73 (73)
4 PHA02929 N1R/p28-like protein; 99.6 3.3E-15 7.1E-20 98.4 4.1 54 5-58 170-227 (238)
5 COG5540 RING-finger-containing 99.5 7.3E-15 1.6E-19 98.9 2.7 56 3-59 317-373 (374)
6 PLN03208 E3 ubiquitin-protein 99.4 1.3E-13 2.9E-18 88.1 4.3 56 2-61 11-82 (193)
7 PF13920 zf-C3HC4_3: Zinc fing 99.4 2.4E-13 5.3E-18 69.9 2.8 47 8-58 1-48 (50)
8 PF12861 zf-Apc11: Anaphase-pr 99.4 3.7E-13 8.1E-18 75.9 3.4 53 6-58 18-82 (85)
9 PF13923 zf-C3HC4_2: Zinc fing 99.4 4.7E-13 1E-17 65.6 2.6 39 12-53 1-39 (39)
10 PF15227 zf-C3HC4_4: zinc fing 99.3 6.2E-13 1.3E-17 66.3 2.5 38 12-53 1-42 (42)
11 cd00162 RING RING-finger (Real 99.3 1.6E-12 3.5E-17 64.3 3.4 44 11-57 1-45 (45)
12 COG5243 HRD1 HRD ubiquitin lig 99.3 1.4E-12 3.1E-17 90.1 3.8 51 7-58 285-345 (491)
13 KOG0317 Predicted E3 ubiquitin 99.3 1.8E-12 3.8E-17 86.7 3.4 50 7-60 237-286 (293)
14 PHA02926 zinc finger-like prot 99.3 2E-12 4.3E-17 84.1 2.4 54 5-58 166-230 (242)
15 KOG0823 Predicted E3 ubiquitin 99.3 2.6E-12 5.5E-17 83.7 2.3 51 7-61 45-98 (230)
16 KOG0320 Predicted E3 ubiquitin 99.2 6.7E-12 1.5E-16 79.1 2.6 51 8-60 130-180 (187)
17 KOG0802 E3 ubiquitin ligase [P 99.2 7.7E-12 1.7E-16 90.6 2.4 53 7-60 289-343 (543)
18 PF14634 zf-RING_5: zinc-RING 99.2 2.2E-11 4.8E-16 61.1 3.3 44 11-55 1-44 (44)
19 PF00097 zf-C3HC4: Zinc finger 99.2 1.5E-11 3.3E-16 60.6 2.6 39 12-53 1-41 (41)
20 smart00504 Ubox Modified RING 99.1 6.3E-11 1.4E-15 63.1 3.9 46 10-59 2-47 (63)
21 smart00184 RING Ring finger. E 99.1 1.4E-10 3E-15 55.4 3.3 38 12-53 1-39 (39)
22 TIGR00599 rad18 DNA repair pro 99.1 1.2E-10 2.6E-15 81.6 3.3 52 4-59 21-72 (397)
23 COG5194 APC11 Component of SCF 99.0 7E-10 1.5E-14 61.6 3.1 34 27-60 50-83 (88)
24 KOG2164 Predicted E3 ubiquitin 98.9 8.2E-10 1.8E-14 78.7 2.5 47 9-59 186-237 (513)
25 KOG0287 Postreplication repair 98.9 8.1E-10 1.8E-14 75.9 2.1 51 7-61 21-71 (442)
26 KOG1493 Anaphase-promoting com 98.9 2.6E-10 5.6E-15 62.9 -0.7 50 9-58 20-81 (84)
27 KOG2930 SCF ubiquitin ligase, 98.8 1.5E-09 3.3E-14 63.0 2.1 49 10-58 47-108 (114)
28 COG5574 PEX10 RING-finger-cont 98.8 2.2E-09 4.8E-14 71.3 2.5 50 7-60 213-264 (271)
29 PF04564 U-box: U-box domain; 98.8 6.2E-09 1.3E-13 57.4 3.5 51 6-60 1-52 (73)
30 PF11793 FANCL_C: FANCL C-term 98.8 1.1E-09 2.4E-14 60.0 -0.3 51 9-59 2-67 (70)
31 PF13445 zf-RING_UBOX: RING-ty 98.8 6E-09 1.3E-13 52.0 2.4 34 12-47 1-35 (43)
32 KOG1734 Predicted RING-contain 98.7 3.6E-09 7.8E-14 70.7 1.6 56 5-61 220-284 (328)
33 smart00744 RINGv The RING-vari 98.7 1.6E-08 3.4E-13 51.9 3.1 42 11-54 1-49 (49)
34 TIGR00570 cdk7 CDK-activating 98.7 1.8E-08 3.8E-13 68.7 3.4 52 8-60 2-56 (309)
35 KOG2177 Predicted E3 ubiquitin 98.7 9E-09 1.9E-13 67.5 1.9 46 5-54 9-54 (386)
36 COG5432 RAD18 RING-finger-cont 98.6 2.5E-08 5.4E-13 67.5 2.2 49 7-59 23-71 (391)
37 KOG0828 Predicted E3 ubiquitin 98.6 2.1E-08 4.5E-13 71.8 1.8 51 7-58 569-634 (636)
38 COG5219 Uncharacterized conser 98.6 1.5E-08 3.3E-13 77.0 0.5 53 6-58 1466-1523(1525)
39 KOG0827 Predicted E3 ubiquitin 98.5 8.5E-08 1.9E-12 66.9 2.3 51 7-57 2-55 (465)
40 PF14835 zf-RING_6: zf-RING of 98.5 2.4E-08 5.2E-13 53.5 -0.6 47 8-59 6-52 (65)
41 KOG0311 Predicted E3 ubiquitin 98.4 2.7E-08 5.8E-13 68.6 -1.3 51 7-60 41-92 (381)
42 KOG0804 Cytoplasmic Zn-finger 98.3 2.5E-07 5.4E-12 65.5 2.0 49 7-58 173-222 (493)
43 KOG4172 Predicted E3 ubiquitin 98.3 2.1E-07 4.6E-12 48.4 0.7 47 9-59 7-55 (62)
44 KOG4265 Predicted E3 ubiquitin 98.3 7.2E-07 1.6E-11 61.6 3.1 50 7-60 288-338 (349)
45 KOG1039 Predicted E3 ubiquitin 98.2 7.4E-07 1.6E-11 61.8 2.1 52 7-58 159-221 (344)
46 KOG0978 E3 ubiquitin ligase in 98.1 6.5E-07 1.4E-11 66.5 0.8 48 8-59 642-690 (698)
47 KOG0824 Predicted E3 ubiquitin 98.1 1.1E-06 2.3E-11 59.7 1.7 50 8-61 6-56 (324)
48 KOG0297 TNF receptor-associate 98.1 1.7E-06 3.7E-11 60.9 2.3 53 6-61 18-70 (391)
49 KOG4159 Predicted E3 ubiquitin 98.1 2.1E-06 4.6E-11 60.5 2.6 51 5-59 80-130 (398)
50 KOG0825 PHD Zn-finger protein 98.1 7E-07 1.5E-11 67.1 0.1 52 8-60 122-173 (1134)
51 KOG1645 RING-finger-containing 98.1 3.3E-06 7.1E-11 59.5 3.0 51 8-58 3-56 (463)
52 PF11789 zf-Nse: Zinc-finger o 98.0 3.8E-06 8.2E-11 44.3 1.8 44 6-52 8-53 (57)
53 KOG4445 Uncharacterized conser 98.0 2.3E-06 5E-11 58.3 1.0 52 8-60 114-188 (368)
54 KOG2660 Locus-specific chromos 97.7 6.6E-06 1.4E-10 56.4 -0.0 51 6-59 12-62 (331)
55 KOG3970 Predicted E3 ubiquitin 97.7 3.3E-05 7E-10 51.0 3.0 55 4-60 45-107 (299)
56 KOG2879 Predicted E3 ubiquitin 97.7 6.5E-05 1.4E-09 50.7 3.8 53 4-59 234-288 (298)
57 COG5152 Uncharacterized conser 97.6 3.2E-05 6.9E-10 50.2 1.5 44 9-56 196-239 (259)
58 PF14570 zf-RING_4: RING/Ubox 97.5 9.9E-05 2.2E-09 37.5 2.4 45 12-57 1-47 (48)
59 KOG1941 Acetylcholine receptor 97.5 4.4E-05 9.6E-10 53.9 1.2 48 8-56 364-414 (518)
60 PF05883 Baculo_RING: Baculovi 97.4 6.6E-05 1.4E-09 45.8 1.5 36 9-45 26-67 (134)
61 KOG1952 Transcription factor N 97.4 8.3E-05 1.8E-09 56.5 1.8 50 7-56 189-245 (950)
62 KOG1785 Tyrosine kinase negati 97.4 7.8E-05 1.7E-09 52.8 1.6 45 10-58 370-416 (563)
63 KOG1813 Predicted E3 ubiquitin 97.2 0.00012 2.7E-09 49.7 0.9 46 8-57 240-285 (313)
64 KOG3039 Uncharacterized conser 97.2 0.00037 7.9E-09 46.6 2.9 54 8-61 220-273 (303)
65 KOG0826 Predicted E3 ubiquitin 97.1 0.0004 8.7E-09 47.9 2.4 57 1-60 292-348 (357)
66 PF10367 Vps39_2: Vacuolar sor 97.1 0.0002 4.4E-09 41.3 0.9 33 7-41 76-108 (109)
67 PF12906 RINGv: RING-variant d 97.1 0.00038 8.3E-09 35.1 1.7 41 12-53 1-47 (47)
68 PHA02825 LAP/PHD finger-like p 97.0 0.00086 1.9E-08 42.0 3.5 52 5-60 4-61 (162)
69 PHA02862 5L protein; Provision 97.0 0.00072 1.6E-08 41.8 2.9 47 9-59 2-54 (156)
70 KOG1428 Inhibitor of type V ad 97.0 0.00053 1.2E-08 55.4 2.8 54 5-59 3482-3545(3738)
71 PF14446 Prok-RING_1: Prokaryo 97.0 0.00092 2E-08 34.7 2.9 35 8-42 4-38 (54)
72 KOG3268 Predicted E3 ubiquitin 96.9 0.00071 1.5E-08 43.4 2.2 54 5-59 161-229 (234)
73 KOG1002 Nucleotide excision re 96.9 0.0004 8.6E-09 50.9 1.2 50 7-60 534-588 (791)
74 PHA03096 p28-like protein; Pro 96.9 0.00062 1.3E-08 46.4 1.9 46 10-55 179-231 (284)
75 PF08746 zf-RING-like: RING-li 96.8 0.00071 1.5E-08 33.6 1.3 41 12-53 1-43 (43)
76 KOG4692 Predicted E3 ubiquitin 96.8 0.0011 2.3E-08 46.5 2.6 49 7-59 420-468 (489)
77 KOG1814 Predicted E3 ubiquitin 96.8 0.00091 2E-08 47.5 2.2 47 8-55 183-237 (445)
78 KOG3002 Zn finger protein [Gen 96.7 0.001 2.2E-08 45.7 1.9 45 7-59 46-92 (299)
79 PF07800 DUF1644: Protein of u 96.6 0.0023 5E-08 40.1 2.7 37 8-45 1-47 (162)
80 KOG1571 Predicted E3 ubiquitin 96.6 0.0017 3.7E-08 45.3 2.3 50 3-59 299-348 (355)
81 PF05290 Baculo_IE-1: Baculovi 96.5 0.0019 4.2E-08 39.4 2.0 53 8-60 79-134 (140)
82 COG5175 MOT2 Transcriptional r 96.5 0.00099 2.2E-08 46.5 0.7 54 7-61 12-67 (480)
83 KOG4185 Predicted E3 ubiquitin 96.4 0.0022 4.9E-08 43.3 2.1 47 10-57 4-54 (296)
84 KOG0801 Predicted E3 ubiquitin 96.3 0.0012 2.6E-08 41.7 0.3 30 7-37 175-204 (205)
85 PF04641 Rtf2: Rtf2 RING-finge 96.3 0.0062 1.3E-07 40.8 3.7 54 6-60 110-163 (260)
86 COG5222 Uncharacterized conser 96.2 0.0038 8.3E-08 43.0 2.2 43 10-55 275-318 (427)
87 PF14447 Prok-RING_4: Prokaryo 96.1 0.0022 4.8E-08 33.4 0.6 31 26-59 21-51 (55)
88 KOG4275 Predicted E3 ubiquitin 96.0 0.0014 2.9E-08 44.9 -0.6 43 9-59 300-343 (350)
89 KOG4739 Uncharacterized protei 95.9 0.004 8.7E-08 41.3 1.4 45 11-59 5-49 (233)
90 COG5236 Uncharacterized conser 95.9 0.0089 1.9E-07 42.0 3.1 49 7-59 59-109 (493)
91 KOG1940 Zn-finger protein [Gen 95.9 0.0055 1.2E-07 41.6 2.0 46 9-55 158-204 (276)
92 KOG2114 Vacuolar assembly/sort 95.8 0.0054 1.2E-07 47.1 1.7 43 9-57 840-882 (933)
93 PF10272 Tmpp129: Putative tra 95.7 0.0065 1.4E-07 42.7 1.9 29 31-59 311-352 (358)
94 KOG1001 Helicase-like transcri 95.4 0.011 2.3E-07 44.7 2.1 47 10-61 455-503 (674)
95 KOG3800 Predicted E3 ubiquitin 95.3 0.019 4.2E-07 39.2 3.0 50 11-60 2-53 (300)
96 PF03854 zf-P11: P-11 zinc fin 95.1 0.0093 2E-07 30.2 0.7 29 31-59 18-47 (50)
97 KOG0298 DEAD box-containing he 95.0 0.0074 1.6E-07 48.1 0.4 47 8-57 1152-1198(1394)
98 KOG0827 Predicted E3 ubiquitin 94.9 0.0014 3E-08 46.3 -3.4 51 9-60 196-247 (465)
99 KOG2817 Predicted E3 ubiquitin 94.7 0.031 6.7E-07 39.6 2.6 46 10-56 335-383 (394)
100 KOG3899 Uncharacterized conser 94.5 0.026 5.6E-07 38.9 1.8 29 31-59 325-366 (381)
101 KOG2034 Vacuolar sorting prote 94.4 0.023 4.9E-07 43.9 1.7 36 7-44 815-850 (911)
102 KOG4367 Predicted Zn-finger pr 94.3 0.032 7E-07 40.5 2.1 36 7-46 2-37 (699)
103 COG5220 TFB3 Cdk activating ki 93.9 0.026 5.6E-07 37.9 1.0 51 8-58 9-64 (314)
104 KOG2932 E3 ubiquitin ligase in 93.7 0.029 6.3E-07 38.9 1.0 30 26-58 105-134 (389)
105 KOG1812 Predicted E3 ubiquitin 93.3 0.04 8.6E-07 39.1 1.1 38 8-46 145-183 (384)
106 KOG0309 Conserved WD40 repeat- 93.1 0.065 1.4E-06 41.2 2.0 39 12-52 1031-1069(1081)
107 KOG3053 Uncharacterized conser 92.6 0.06 1.3E-06 36.4 1.2 53 7-60 18-84 (293)
108 PF14569 zf-UDP: Zinc-binding 91.7 0.33 7.2E-06 27.1 3.2 56 7-62 7-66 (80)
109 KOG0825 PHD Zn-finger protein 91.7 0.14 2.9E-06 39.7 2.2 56 3-58 90-154 (1134)
110 KOG1609 Protein involved in mR 91.4 0.13 2.8E-06 34.8 1.7 51 10-60 79-136 (323)
111 KOG4362 Transcriptional regula 91.2 0.06 1.3E-06 40.7 -0.1 48 8-59 20-70 (684)
112 PF02891 zf-MIZ: MIZ/SP-RING z 90.6 0.35 7.6E-06 24.5 2.5 42 10-55 3-49 (50)
113 KOG3161 Predicted E3 ubiquitin 90.5 0.083 1.8E-06 39.9 0.1 45 5-51 7-51 (861)
114 KOG1815 Predicted E3 ubiquitin 89.6 0.27 5.8E-06 35.5 2.1 37 7-46 68-104 (444)
115 PF10571 UPF0547: Uncharacteri 89.1 0.22 4.8E-06 21.9 0.9 23 11-35 2-24 (26)
116 PF10497 zf-4CXXC_R1: Zinc-fin 88.7 0.64 1.4E-05 27.2 2.9 51 5-56 3-70 (105)
117 KOG4718 Non-SMC (structural ma 88.6 0.28 6.2E-06 32.3 1.5 45 10-57 182-226 (235)
118 PF06844 DUF1244: Protein of u 87.6 0.37 8E-06 26.0 1.3 13 34-46 11-23 (68)
119 PF07975 C1_4: TFIIH C1-like d 87.3 0.59 1.3E-05 24.0 1.9 43 12-54 2-50 (51)
120 PF00628 PHD: PHD-finger; Int 87.0 0.38 8.3E-06 23.9 1.2 43 11-54 1-49 (51)
121 KOG1100 Predicted E3 ubiquitin 86.9 0.31 6.8E-06 31.9 1.0 38 12-57 161-199 (207)
122 KOG1812 Predicted E3 ubiquitin 86.9 0.35 7.6E-06 34.4 1.3 44 9-53 306-351 (384)
123 smart00249 PHD PHD zinc finger 86.8 0.64 1.4E-05 22.0 1.9 31 11-42 1-31 (47)
124 COG5183 SSM4 Protein involved 86.6 0.88 1.9E-05 35.7 3.3 51 7-58 10-66 (1175)
125 KOG0269 WD40 repeat-containing 86.2 0.9 1.9E-05 35.1 3.1 42 9-52 779-820 (839)
126 PF01363 FYVE: FYVE zinc finge 85.7 0.44 9.5E-06 25.3 1.0 39 5-43 5-43 (69)
127 PF13719 zinc_ribbon_5: zinc-r 84.8 0.74 1.6E-05 21.8 1.5 26 10-35 3-35 (37)
128 PLN02638 cellulose synthase A 84.4 1.4 3E-05 35.3 3.5 54 8-61 16-73 (1079)
129 PLN02189 cellulose synthase 84.0 1.5 3.2E-05 35.0 3.5 54 8-61 33-90 (1040)
130 PF07191 zinc-ribbons_6: zinc- 83.0 0.42 9.1E-06 26.1 0.2 43 9-60 1-43 (70)
131 PLN02436 cellulose synthase A 83.0 1.7 3.7E-05 34.9 3.5 54 8-61 35-92 (1094)
132 KOG1829 Uncharacterized conser 82.6 0.54 1.2E-05 35.2 0.7 27 26-55 532-558 (580)
133 smart00064 FYVE Protein presen 82.3 1.7 3.6E-05 22.9 2.4 39 7-45 8-46 (68)
134 PLN02400 cellulose synthase 80.7 1.4 3.1E-05 35.3 2.4 53 8-60 35-91 (1085)
135 TIGR00622 ssl1 transcription f 80.5 2.4 5.3E-05 25.2 2.8 46 9-54 55-110 (112)
136 PF13901 DUF4206: Domain of un 79.6 1.4 3.1E-05 28.5 1.8 41 9-55 152-197 (202)
137 PF13717 zinc_ribbon_4: zinc-r 79.5 1.1 2.4E-05 21.1 0.9 26 10-35 3-35 (36)
138 smart00132 LIM Zinc-binding do 78.8 1.8 3.9E-05 19.6 1.6 36 12-57 2-37 (39)
139 KOG2068 MOT2 transcription fac 78.4 2.1 4.6E-05 29.9 2.4 49 9-58 249-298 (327)
140 cd00065 FYVE FYVE domain; Zinc 77.6 1.9 4.1E-05 21.8 1.6 35 10-44 3-37 (57)
141 KOG3039 Uncharacterized conser 77.5 1.9 4.2E-05 29.3 2.0 33 9-45 43-75 (303)
142 PF04423 Rad50_zn_hook: Rad50 77.1 0.94 2E-05 23.1 0.3 15 48-62 21-35 (54)
143 PF06906 DUF1272: Protein of u 76.6 3.1 6.7E-05 21.7 2.2 45 11-59 7-53 (57)
144 KOG2066 Vacuolar assembly/sort 76.1 1.1 2.4E-05 34.7 0.6 40 8-48 783-826 (846)
145 KOG3579 Predicted E3 ubiquitin 75.7 1.5 3.3E-05 30.3 1.2 40 7-46 266-305 (352)
146 COG5109 Uncharacterized conser 75.5 2.2 4.8E-05 30.0 1.9 45 10-55 337-384 (396)
147 PF00412 LIM: LIM domain; Int 75.2 1.7 3.6E-05 21.9 1.0 38 12-59 1-38 (58)
148 KOG3005 GIY-YIG type nuclease 74.9 2.3 4.9E-05 29.1 1.8 50 9-58 182-243 (276)
149 KOG3113 Uncharacterized conser 72.9 3.8 8.2E-05 27.9 2.4 52 7-60 109-160 (293)
150 COG3492 Uncharacterized protei 72.8 2.3 5.1E-05 24.5 1.2 13 34-46 42-54 (104)
151 PLN02195 cellulose synthase A 71.2 5.2 0.00011 31.9 3.2 50 9-58 6-59 (977)
152 smart00647 IBR In Between Ring 70.6 1.2 2.5E-05 22.9 -0.3 34 10-43 19-58 (64)
153 PLN02915 cellulose synthase A 69.8 7.9 0.00017 31.2 3.9 54 6-59 12-69 (1044)
154 COG3813 Uncharacterized protei 68.6 2.8 6.2E-05 23.1 1.0 27 31-59 27-53 (84)
155 KOG2807 RNA polymerase II tran 67.3 5.8 0.00013 28.0 2.5 47 8-55 329-375 (378)
156 PF14311 DUF4379: Domain of un 66.1 4.9 0.00011 20.4 1.5 26 27-53 30-55 (55)
157 PF07649 C1_3: C1-like domain; 65.8 7.4 0.00016 17.2 2.0 29 11-40 2-30 (30)
158 KOG2979 Protein involved in DN 63.9 4 8.8E-05 27.7 1.2 42 9-53 176-219 (262)
159 PF13832 zf-HC5HC2H_2: PHD-zin 63.7 5.7 0.00012 22.8 1.7 33 7-42 53-87 (110)
160 KOG0802 E3 ubiquitin ligase [P 63.2 3.9 8.4E-05 30.3 1.1 45 7-59 477-521 (543)
161 PF04710 Pellino: Pellino; In 62.5 2.5 5.4E-05 30.4 0.0 27 26-56 305-337 (416)
162 PF06750 DiS_P_DiS: Bacterial 59.5 6.8 0.00015 22.3 1.5 21 40-60 51-71 (92)
163 cd04718 BAH_plant_2 BAH, or Br 57.8 1.7 3.7E-05 27.1 -1.3 24 35-58 2-29 (148)
164 PF13771 zf-HC5HC2H: PHD-like 57.1 6.9 0.00015 21.5 1.2 34 8-42 35-68 (90)
165 PF04216 FdhE: Protein involve 52.3 1.2 2.6E-05 30.2 -2.8 50 7-56 170-220 (290)
166 KOG0824 Predicted E3 ubiquitin 51.9 5 0.00011 28.0 0.1 50 7-59 103-152 (324)
167 KOG1818 Membrane trafficking a 51.2 6.9 0.00015 29.9 0.7 53 1-53 157-217 (634)
168 PRK11088 rrmA 23S rRNA methylt 50.5 13 0.00028 24.8 1.9 25 10-35 3-27 (272)
169 PF07282 OrfB_Zn_ribbon: Putat 48.6 16 0.00036 19.1 1.8 29 10-38 29-59 (69)
170 KOG2041 WD40 repeat protein [G 48.4 12 0.00027 29.5 1.7 47 7-57 1129-1184(1189)
171 KOG1245 Chromatin remodeling c 47.5 7.2 0.00016 32.4 0.4 53 4-57 1103-1159(1404)
172 PF14169 YdjO: Cold-inducible 47.3 8.9 0.00019 20.2 0.6 13 47-59 39-51 (59)
173 PF02318 FYVE_2: FYVE-type zin 46.6 11 0.00024 22.2 1.0 46 8-55 53-102 (118)
174 PF09889 DUF2116: Uncharacteri 46.3 12 0.00026 19.7 1.0 13 47-59 3-15 (59)
175 smart00734 ZnF_Rad18 Rad18-lik 45.6 13 0.00028 16.1 0.9 9 49-57 3-11 (26)
176 PF10146 zf-C4H2: Zinc finger- 45.6 16 0.00035 24.4 1.7 27 35-61 196-222 (230)
177 KOG4451 Uncharacterized conser 45.5 15 0.00033 24.8 1.6 27 35-61 251-277 (286)
178 COG5627 MMS21 DNA repair prote 44.6 11 0.00023 25.6 0.7 41 9-52 189-231 (275)
179 PF05715 zf-piccolo: Piccolo Z 43.0 9.9 0.00021 20.1 0.3 10 48-57 3-12 (61)
180 PF06937 EURL: EURL protein; 42.9 26 0.00057 24.1 2.4 45 9-53 30-76 (285)
181 KOG4323 Polycomb-like PHD Zn-f 42.1 18 0.0004 26.6 1.7 50 7-56 166-224 (464)
182 PF15353 HECA: Headcase protei 41.6 22 0.00047 21.0 1.6 15 31-45 40-54 (107)
183 KOG3799 Rab3 effector RIM1 and 41.5 5.7 0.00012 24.6 -0.8 49 7-56 63-116 (169)
184 PLN02248 cellulose synthase-li 40.9 26 0.00056 28.7 2.4 30 30-59 149-178 (1135)
185 KOG3842 Adaptor protein Pellin 40.6 39 0.00083 24.1 3.0 52 7-59 339-415 (429)
186 PF06676 DUF1178: Protein of u 39.5 7 0.00015 24.4 -0.7 22 31-57 10-42 (148)
187 KOG4080 Mitochondrial ribosoma 39.0 13 0.00027 23.8 0.4 27 23-58 91-117 (176)
188 TIGR02098 MJ0042_CXXC MJ0042 f 38.5 33 0.00071 15.7 1.8 11 10-20 3-13 (38)
189 PF01485 IBR: IBR domain; Int 37.1 3.3 7.2E-05 21.1 -2.1 34 10-43 19-58 (64)
190 KOG4443 Putative transcription 36.4 17 0.00038 28.0 0.9 49 9-57 18-72 (694)
191 smart00109 C1 Protein kinase C 36.4 39 0.00083 15.8 1.9 36 7-42 9-44 (49)
192 KOG2231 Predicted E3 ubiquitin 36.4 31 0.00067 26.7 2.2 46 11-60 2-54 (669)
193 PF13913 zf-C2HC_2: zinc-finge 36.2 21 0.00044 15.2 0.8 11 49-59 4-14 (25)
194 PF05191 ADK_lid: Adenylate ki 36.2 15 0.00033 17.2 0.4 29 28-58 4-32 (36)
195 cd00729 rubredoxin_SM Rubredox 36.1 23 0.00049 16.3 1.0 9 48-56 19-27 (34)
196 PF00130 C1_1: Phorbol esters/ 35.1 35 0.00077 16.7 1.7 35 7-42 9-45 (53)
197 PF05502 Dynactin_p62: Dynacti 34.6 20 0.00043 26.5 0.9 12 49-60 54-65 (483)
198 PF13248 zf-ribbon_3: zinc-rib 34.2 5.7 0.00012 17.1 -1.2 6 49-54 18-23 (26)
199 PRK11827 hypothetical protein; 34.1 12 0.00026 19.7 -0.2 18 42-59 3-20 (60)
200 PF09723 Zn-ribbon_8: Zinc rib 33.9 6.3 0.00014 19.0 -1.2 25 30-55 10-34 (42)
201 PF12660 zf-TFIIIC: Putative z 33.7 4 8.7E-05 23.5 -2.2 51 9-61 14-69 (99)
202 PF14353 CpXC: CpXC protein 33.3 24 0.00052 20.8 1.0 47 10-60 2-51 (128)
203 PF11023 DUF2614: Protein of u 31.7 43 0.00093 20.0 1.8 30 26-61 70-99 (114)
204 KOG2789 Putative Zn-finger pro 31.0 14 0.0003 26.9 -0.3 34 9-44 74-107 (482)
205 TIGR01562 FdhE formate dehydro 30.9 8.7 0.00019 26.7 -1.3 47 8-55 183-232 (305)
206 PF03107 C1_2: C1 domain; Int 30.3 33 0.00072 15.1 1.0 28 11-39 2-29 (30)
207 cd00350 rubredoxin_like Rubred 30.3 35 0.00075 15.4 1.1 9 47-55 17-25 (33)
208 PRK00241 nudC NADH pyrophospha 30.2 36 0.00078 22.9 1.5 21 39-59 91-111 (256)
209 KOG1729 FYVE finger containing 30.0 8.9 0.00019 26.5 -1.4 37 11-48 216-252 (288)
210 PF09538 FYDLN_acid: Protein o 29.9 23 0.00049 20.9 0.5 26 35-60 11-39 (108)
211 PF03119 DNA_ligase_ZBD: NAD-d 29.4 21 0.00046 15.7 0.2 10 49-58 1-10 (28)
212 PF12773 DZR: Double zinc ribb 28.9 31 0.00067 16.7 0.8 11 47-57 29-39 (50)
213 PF09943 DUF2175: Uncharacteri 28.6 63 0.0014 18.9 2.2 34 10-45 3-36 (101)
214 KOG2462 C2H2-type Zn-finger pr 28.1 32 0.00069 23.7 1.0 49 7-59 159-227 (279)
215 PRK01343 zinc-binding protein; 28.1 31 0.00067 18.0 0.8 12 47-58 9-20 (57)
216 KOG1512 PHD Zn-finger protein 27.9 25 0.00055 24.6 0.5 34 7-41 312-345 (381)
217 PF08274 PhnA_Zn_Ribbon: PhnA 27.5 32 0.0007 15.5 0.7 24 11-34 4-28 (30)
218 PF15446 zf-PHD-like: PHD/FYVE 27.2 38 0.00083 21.7 1.2 31 12-43 2-35 (175)
219 PRK03564 formate dehydrogenase 27.0 32 0.0007 24.0 0.9 47 8-55 186-234 (309)
220 KOG1538 Uncharacterized conser 27.0 26 0.00057 27.5 0.5 33 26-58 1045-1077(1081)
221 COG4847 Uncharacterized protei 26.8 96 0.0021 18.0 2.7 36 9-46 6-41 (103)
222 PF03966 Trm112p: Trm112p-like 26.4 64 0.0014 16.9 1.8 10 49-58 55-64 (68)
223 PF10235 Cript: Microtubule-as 25.9 32 0.0007 19.7 0.6 37 9-58 44-80 (90)
224 COG2835 Uncharacterized conser 25.1 30 0.00066 18.3 0.4 12 49-60 10-21 (60)
225 PF10083 DUF2321: Uncharacteri 24.1 42 0.00091 21.2 0.9 25 31-58 26-50 (158)
226 KOG0955 PHD finger protein BR1 24.1 71 0.0015 26.2 2.3 37 5-41 215-252 (1051)
227 PF10170 C6_DPF: Cysteine-rich 23.8 79 0.0017 18.4 2.0 35 9-45 49-83 (97)
228 COG4357 Zinc finger domain con 23.5 66 0.0014 18.8 1.6 13 47-59 80-92 (105)
229 COG4068 Uncharacterized protei 23.5 42 0.00091 17.8 0.7 15 47-61 8-22 (64)
230 PF00301 Rubredoxin: Rubredoxi 23.1 36 0.00078 16.9 0.4 14 4-17 29-42 (47)
231 PF10013 DUF2256: Uncharacteri 23.1 44 0.00095 16.4 0.7 13 47-59 8-20 (42)
232 PRK00418 DNA gyrase inhibitor; 23.0 36 0.00079 18.1 0.5 11 48-58 7-17 (62)
233 PF03884 DUF329: Domain of unk 22.6 29 0.00064 18.1 0.0 11 49-59 4-14 (57)
234 PF06677 Auto_anti-p27: Sjogre 22.5 60 0.0013 15.7 1.1 17 43-59 13-29 (41)
235 PF07227 DUF1423: Protein of u 22.5 59 0.0013 24.0 1.5 32 11-43 130-164 (446)
236 PF13453 zf-TFIIB: Transcripti 22.5 38 0.00082 15.9 0.4 10 49-58 1-10 (41)
237 PF13894 zf-C2H2_4: C2H2-type 22.4 37 0.00081 13.0 0.4 9 50-58 3-11 (24)
238 cd00029 C1 Protein kinase C co 22.4 57 0.0012 15.4 1.1 35 8-42 10-45 (50)
239 PF09654 DUF2396: Protein of u 22.3 34 0.00073 21.4 0.3 14 47-60 6-19 (161)
240 TIGR02652 conserved hypothetic 22.2 33 0.00072 21.4 0.2 14 47-60 9-22 (163)
241 COG5242 TFB4 RNA polymerase II 22.1 44 0.00094 22.7 0.8 11 47-57 274-284 (296)
242 cd00730 rubredoxin Rubredoxin; 21.6 40 0.00087 17.0 0.4 14 5-18 30-43 (50)
243 PRK11595 DNA utilization prote 21.5 86 0.0019 20.5 2.1 39 10-57 6-44 (227)
244 TIGR02300 FYDLN_acid conserved 21.3 45 0.00098 20.4 0.7 25 36-60 12-39 (129)
245 COG0675 Transposase and inacti 21.2 96 0.0021 20.6 2.3 27 10-39 310-336 (364)
246 COG1545 Predicted nucleic-acid 21.1 68 0.0015 19.5 1.5 23 27-57 31-53 (140)
247 PRK00420 hypothetical protein; 21.0 86 0.0019 18.6 1.8 12 48-59 41-52 (112)
248 KOG1701 Focal adhesion adaptor 20.7 8.6 0.00019 28.1 -2.9 11 49-59 396-406 (468)
249 COG1645 Uncharacterized Zn-fin 20.3 73 0.0016 19.5 1.4 7 49-55 46-52 (131)
No 1
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.73 E-value=1.5e-18 Score=87.35 Aligned_cols=43 Identities=44% Similarity=1.239 Sum_probs=39.7
Q ss_pred ccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCccccc
Q 036506 11 YCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCR 54 (86)
Q Consensus 11 ~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr 54 (86)
+|+||++.|..++.+..++ |||.||.+||.+|++++.+||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhCCcCCccC
Confidence 6999999998888888998 999999999999999999999997
No 2
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1.1e-16 Score=109.76 Aligned_cols=53 Identities=38% Similarity=0.970 Sum_probs=47.4
Q ss_pred cccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCC-Cccccccccchhhhh
Q 036506 10 CYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRS-TCPLCRIEVAIVIAR 63 (86)
Q Consensus 10 ~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~-~CP~Cr~~~~~~~~~ 63 (86)
..|+||+|+|..++.+++|| |+|.||..||++||.+.+ .||+|+..+......
T Consensus 230 ~~CaIClEdY~~GdklRiLP-C~H~FH~~CIDpWL~~~r~~CPvCK~di~~~~~~ 283 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILP-CSHKFHVNCIDPWLTQTRTFCPVCKRDIRTDSGS 283 (348)
T ss_pred ceEEEeecccccCCeeeEec-CCCchhhccchhhHhhcCccCCCCCCcCCCCCCC
Confidence 49999999999999999999 999999999999999875 499999987665433
No 3
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.57 E-value=2.7e-15 Score=82.95 Aligned_cols=45 Identities=38% Similarity=0.943 Sum_probs=35.4
Q ss_pred ccccccccccccCC----------CceeEcCCCCCcchHHhHHHHHhcCCCccccc
Q 036506 9 YCYCTVCLDGISDG----------QKFRRLPECKHCFHVECIDAWFQSRSTCPLCR 54 (86)
Q Consensus 9 ~~~C~ICl~~~~~~----------~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr 54 (86)
+..|+||++.|.++ -.+...+ |||.||..||.+||+.+.+||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~-C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGP-CGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEET-TSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecc-cCCCEEHHHHHHHHhcCCcCCCCC
Confidence 44599999999432 2344455 999999999999999999999997
No 4
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.56 E-value=3.3e-15 Score=98.41 Aligned_cols=54 Identities=33% Similarity=0.846 Sum_probs=43.8
Q ss_pred CCCcccccccccccccCCC----ceeEcCCCCCcchHHhHHHHHhcCCCccccccccc
Q 036506 5 KCPYYCYCTVCLDGISDGQ----KFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVA 58 (86)
Q Consensus 5 ~~~~~~~C~ICl~~~~~~~----~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 58 (86)
+...+.+|+||++.+..+. .+.+++.|+|.||..||.+|++++.+||+||..+.
T Consensus 170 ~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 170 NRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI 227 (238)
T ss_pred cCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence 3456789999999976543 12345459999999999999999999999999875
No 5
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=7.3e-15 Score=98.92 Aligned_cols=56 Identities=32% Similarity=0.883 Sum_probs=49.2
Q ss_pred CCCCCcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhc-CCCccccccccch
Q 036506 3 AAKCPYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQS-RSTCPLCRIEVAI 59 (86)
Q Consensus 3 ~~~~~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 59 (86)
+..+..+.+|+|||+.|...+.++++| |.|.||..|+++|+.. +..||+||.++++
T Consensus 317 ~~ea~~GveCaICms~fiK~d~~~vlP-C~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 317 AVEADKGVECAICMSNFIKNDRLRVLP-CDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred HHhcCCCceEEEEhhhhcccceEEEec-cCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 344567799999999999889999999 9999999999999994 7789999998864
No 6
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.43 E-value=1.3e-13 Score=88.06 Aligned_cols=56 Identities=29% Similarity=0.619 Sum_probs=44.7
Q ss_pred CCCCCCcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhc----------------CCCccccccccchhh
Q 036506 2 TAAKCPYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQS----------------RSTCPLCRIEVAIVI 61 (86)
Q Consensus 2 t~~~~~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~----------------~~~CP~Cr~~~~~~~ 61 (86)
|..+..++.+|+||++.+.++ ++++ |||.||..||..|+.. ...||+||..+....
T Consensus 11 ~~~~~~~~~~CpICld~~~dP---VvT~-CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~ 82 (193)
T PLN03208 11 TLVDSGGDFDCNICLDQVRDP---VVTL-CGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEAT 82 (193)
T ss_pred eeccCCCccCCccCCCcCCCc---EEcC-CCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhc
Confidence 344567889999999998876 4555 9999999999999852 247999999886543
No 7
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.39 E-value=2.4e-13 Score=69.94 Aligned_cols=47 Identities=30% Similarity=0.772 Sum_probs=38.8
Q ss_pred cccccccccccccCCCceeEcCCCCCc-chHHhHHHHHhcCCCccccccccc
Q 036506 8 YYCYCTVCLDGISDGQKFRRLPECKHC-FHVECIDAWFQSRSTCPLCRIEVA 58 (86)
Q Consensus 8 ~~~~C~ICl~~~~~~~~~~~~~~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~~~ 58 (86)
++..|.||++...+ +..+| |||. ||..|+.+|+++...||+||+++.
T Consensus 1 ~~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRD---VVLLP-CGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSS---EEEET-TCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred CcCCCccCCccCCc---eEEeC-CCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 46789999998654 36777 9999 999999999999999999999874
No 8
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=99.38 E-value=3.7e-13 Score=75.86 Aligned_cols=53 Identities=25% Similarity=0.593 Sum_probs=40.4
Q ss_pred CCcccccccccccccCC--------C-ceeEcCCCCCcchHHhHHHHHhc---CCCccccccccc
Q 036506 6 CPYYCYCTVCLDGISDG--------Q-KFRRLPECKHCFHVECIDAWFQS---RSTCPLCRIEVA 58 (86)
Q Consensus 6 ~~~~~~C~ICl~~~~~~--------~-~~~~~~~C~H~fh~~Ci~~wl~~---~~~CP~Cr~~~~ 58 (86)
.+.+..|+||+..|... + ...+...|+|.||..||.+|+++ +..||+||+.+.
T Consensus 18 ~~~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 18 VANDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred cCCCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 35688999999988621 1 11234469999999999999985 468999999874
No 9
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.36 E-value=4.7e-13 Score=65.60 Aligned_cols=39 Identities=38% Similarity=1.069 Sum_probs=32.0
Q ss_pred cccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCcccc
Q 036506 12 CTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLC 53 (86)
Q Consensus 12 C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~C 53 (86)
|+||++.+.++ ++.++ |||.||..|+.+|++.+..||+|
T Consensus 1 C~iC~~~~~~~--~~~~~-CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDP--VVVTP-CGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSE--EEECT-TSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCc--CEECC-CCCchhHHHHHHHHHCcCCCcCC
Confidence 89999998763 34555 99999999999999998899987
No 10
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.35 E-value=6.2e-13 Score=66.28 Aligned_cols=38 Identities=37% Similarity=0.974 Sum_probs=29.3
Q ss_pred cccccccccCCCceeEcCCCCCcchHHhHHHHHhcC----CCcccc
Q 036506 12 CTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSR----STCPLC 53 (86)
Q Consensus 12 C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~----~~CP~C 53 (86)
|+||++.|.++ +.++ |||.|+..||.+|++.. ..||.|
T Consensus 1 CpiC~~~~~~P---v~l~-CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDP---VSLP-CGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSE---EE-S-SSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCc---cccC-CcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999988 5676 99999999999999863 369987
No 11
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=99.33 E-value=1.6e-12 Score=64.28 Aligned_cols=44 Identities=43% Similarity=1.114 Sum_probs=35.8
Q ss_pred ccccccccccCCCceeEcCCCCCcchHHhHHHHHhc-CCCcccccccc
Q 036506 11 YCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQS-RSTCPLCRIEV 57 (86)
Q Consensus 11 ~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~~ 57 (86)
+|+||++.+.. .+...+ |||.||..|+..|+++ +..||+||..+
T Consensus 1 ~C~iC~~~~~~--~~~~~~-C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFRE--PVVLLP-CGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhC--ceEecC-CCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 58999999843 334444 9999999999999997 77899998753
No 12
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=1.4e-12 Score=90.08 Aligned_cols=51 Identities=35% Similarity=0.913 Sum_probs=43.0
Q ss_pred Cccccccccccc-ccCC---------CceeEcCCCCCcchHHhHHHHHhcCCCccccccccc
Q 036506 7 PYYCYCTVCLDG-ISDG---------QKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVA 58 (86)
Q Consensus 7 ~~~~~C~ICl~~-~~~~---------~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 58 (86)
..+..|.||+++ |..+ +..+.+| |||.+|.+|+..|++++.+||+||.++.
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLp-CGHilHl~CLknW~ERqQTCPICr~p~i 345 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLP-CGHILHLHCLKNWLERQQTCPICRRPVI 345 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCccccc-ccceeeHHHHHHHHHhccCCCcccCccc
Confidence 567899999999 4443 1236888 9999999999999999999999999843
No 13
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=1.8e-12 Score=86.74 Aligned_cols=50 Identities=32% Similarity=0.747 Sum_probs=43.5
Q ss_pred CcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCccccccccchh
Q 036506 7 PYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVAIV 60 (86)
Q Consensus 7 ~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 60 (86)
+....|.|||+..+++ ..+| |||+||..||..|...+..||+||..+.+.
T Consensus 237 ~a~~kC~LCLe~~~~p---SaTp-CGHiFCWsCI~~w~~ek~eCPlCR~~~~ps 286 (293)
T KOG0317|consen 237 EATRKCSLCLENRSNP---SATP-CGHIFCWSCILEWCSEKAECPLCREKFQPS 286 (293)
T ss_pred CCCCceEEEecCCCCC---CcCc-CcchHHHHHHHHHHccccCCCcccccCCCc
Confidence 4458899999998887 4666 999999999999999999999999987653
No 14
>PHA02926 zinc finger-like protein; Provisional
Probab=99.27 E-value=2e-12 Score=84.09 Aligned_cols=54 Identities=28% Similarity=0.787 Sum_probs=41.0
Q ss_pred CCCcccccccccccccCC-----CceeEcCCCCCcchHHhHHHHHhcC------CCccccccccc
Q 036506 5 KCPYYCYCTVCLDGISDG-----QKFRRLPECKHCFHVECIDAWFQSR------STCPLCRIEVA 58 (86)
Q Consensus 5 ~~~~~~~C~ICl~~~~~~-----~~~~~~~~C~H~fh~~Ci~~wl~~~------~~CP~Cr~~~~ 58 (86)
+.+.+.+|+|||+.+-.+ ....+++.|+|.||..||..|.+.+ ++||+||..+.
T Consensus 166 ~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 166 RVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred hccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 346689999999986321 1223566699999999999999752 46999999765
No 15
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=2.6e-12 Score=83.73 Aligned_cols=51 Identities=33% Similarity=0.739 Sum_probs=41.2
Q ss_pred CcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhc---CCCccccccccchhh
Q 036506 7 PYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQS---RSTCPLCRIEVAIVI 61 (86)
Q Consensus 7 ~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~---~~~CP~Cr~~~~~~~ 61 (86)
....+|.|||+.-+++ ++. .|||.||..||-+||.. ++.||+|+..+....
T Consensus 45 ~~~FdCNICLd~akdP---VvT-lCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~ 98 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDP---VVT-LCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDT 98 (230)
T ss_pred CCceeeeeeccccCCC---EEe-ecccceehHHHHHHHhhcCCCeeCCccccccccce
Confidence 4567999999997766 333 39999999999999985 456999999876554
No 16
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=6.7e-12 Score=79.06 Aligned_cols=51 Identities=27% Similarity=0.666 Sum_probs=42.1
Q ss_pred cccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCccccccccchh
Q 036506 8 YYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVAIV 60 (86)
Q Consensus 8 ~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 60 (86)
+-..|||||+.+..... +..+|||+||..||...++....||+|+..+..+
T Consensus 130 ~~~~CPiCl~~~sek~~--vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k 180 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEKVP--VSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHK 180 (187)
T ss_pred cccCCCceecchhhccc--cccccchhHHHHHHHHHHHhCCCCCCcccccchh
Confidence 34789999999876432 3345999999999999999999999999877654
No 17
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=7.7e-12 Score=90.59 Aligned_cols=53 Identities=36% Similarity=0.893 Sum_probs=45.0
Q ss_pred CcccccccccccccCCCc--eeEcCCCCCcchHHhHHHHHhcCCCccccccccchh
Q 036506 7 PYYCYCTVCLDGISDGQK--FRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVAIV 60 (86)
Q Consensus 7 ~~~~~C~ICl~~~~~~~~--~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 60 (86)
..+..|+||++.+..+.. ...++ |+|+||..|+..|+++.++||+||..+...
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~-C~Hifh~~CL~~W~er~qtCP~CR~~~~~~ 343 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLP-CGHIFHDSCLRSWFERQQTCPTCRTVLYDY 343 (543)
T ss_pred hcCCeeeeechhhccccccccceee-cccchHHHHHHHHHHHhCcCCcchhhhhcc
Confidence 458899999999987543 46887 999999999999999999999999954433
No 18
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=99.19 E-value=2.2e-11 Score=61.11 Aligned_cols=44 Identities=27% Similarity=0.743 Sum_probs=36.1
Q ss_pred ccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCcccccc
Q 036506 11 YCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRI 55 (86)
Q Consensus 11 ~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~ 55 (86)
.|+||++.+.......+++ |||.||..|+.++......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~-CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTS-CGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcc-cCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 4899999995444556665 9999999999998866778999984
No 19
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=99.19 E-value=1.5e-11 Score=60.55 Aligned_cols=39 Identities=38% Similarity=1.105 Sum_probs=32.7
Q ss_pred cccccccccCCCceeEcCCCCCcchHHhHHHHHh--cCCCcccc
Q 036506 12 CTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQ--SRSTCPLC 53 (86)
Q Consensus 12 C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~--~~~~CP~C 53 (86)
|+||++.+..+. ..++ |||.||..|+.+|++ ....||+|
T Consensus 1 C~iC~~~~~~~~--~~~~-C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPV--ILLP-CGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEE--EETT-TSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCC--EEec-CCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999988662 3565 999999999999999 45679987
No 20
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.14 E-value=6.3e-11 Score=63.12 Aligned_cols=46 Identities=22% Similarity=0.461 Sum_probs=40.5
Q ss_pred cccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCccccccccch
Q 036506 10 CYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVAI 59 (86)
Q Consensus 10 ~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 59 (86)
..|+||++.+.++ ++++ |||.|++.||.+|++.+..||+|+..+..
T Consensus 2 ~~Cpi~~~~~~~P---v~~~-~G~v~~~~~i~~~~~~~~~cP~~~~~~~~ 47 (63)
T smart00504 2 FLCPISLEVMKDP---VILP-SGQTYERRAIEKWLLSHGTDPVTGQPLTH 47 (63)
T ss_pred cCCcCCCCcCCCC---EECC-CCCEEeHHHHHHHHHHCCCCCCCcCCCCh
Confidence 5799999999987 4566 99999999999999998899999987743
No 21
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=99.08 E-value=1.4e-10 Score=55.39 Aligned_cols=38 Identities=42% Similarity=1.168 Sum_probs=31.1
Q ss_pred cccccccccCCCceeEcCCCCCcchHHhHHHHHh-cCCCcccc
Q 036506 12 CTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQ-SRSTCPLC 53 (86)
Q Consensus 12 C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~-~~~~CP~C 53 (86)
|+||++.... ...++ |+|.||..|+..|+. ....||+|
T Consensus 1 C~iC~~~~~~---~~~~~-C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKD---PVVLP-CGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCC---cEEec-CCChHHHHHHHHHHHhCcCCCCCC
Confidence 7899998443 35666 999999999999998 56679987
No 22
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.06 E-value=1.2e-10 Score=81.64 Aligned_cols=52 Identities=27% Similarity=0.494 Sum_probs=44.4
Q ss_pred CCCCcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCccccccccch
Q 036506 4 AKCPYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVAI 59 (86)
Q Consensus 4 ~~~~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 59 (86)
+.......|+||++.|..+ ++++ |||.||..||..|+.....||+||..+..
T Consensus 21 ~~Le~~l~C~IC~d~~~~P---vitp-CgH~FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 21 YPLDTSLRCHICKDFFDVP---VLTS-CSHTFCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred cccccccCCCcCchhhhCc---cCCC-CCCchhHHHHHHHHhCCCCCCCCCCcccc
Confidence 3456788999999999877 3555 99999999999999988899999998754
No 23
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.95 E-value=7e-10 Score=61.64 Aligned_cols=34 Identities=32% Similarity=0.783 Sum_probs=29.5
Q ss_pred EcCCCCCcchHHhHHHHHhcCCCccccccccchh
Q 036506 27 RLPECKHCFHVECIDAWFQSRSTCPLCRIEVAIV 60 (86)
Q Consensus 27 ~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 60 (86)
.-..|.|.||..||.+||..+..||++|+.+...
T Consensus 50 ~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~~ 83 (88)
T COG5194 50 VWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVLA 83 (88)
T ss_pred EEEecchHHHHHHHHHHHhhCCCCCCCCceeEEe
Confidence 3345999999999999999999999999987643
No 24
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=8.2e-10 Score=78.74 Aligned_cols=47 Identities=28% Similarity=0.687 Sum_probs=39.2
Q ss_pred ccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcC-----CCccccccccch
Q 036506 9 YCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSR-----STCPLCRIEVAI 59 (86)
Q Consensus 9 ~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~-----~~CP~Cr~~~~~ 59 (86)
+..|||||+....+ ..+.|||+||..||.++|... ..||+||..+..
T Consensus 186 ~~~CPICL~~~~~p----~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVP----VRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCcc----cccccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 78999999997766 333499999999999988753 479999998776
No 25
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.88 E-value=8.1e-10 Score=75.87 Aligned_cols=51 Identities=24% Similarity=0.556 Sum_probs=44.7
Q ss_pred CcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCccccccccchhh
Q 036506 7 PYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVAIVI 61 (86)
Q Consensus 7 ~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 61 (86)
..-+.|.||.++|..+ .+.| |+|.||..||..+|..+..||.|+..+....
T Consensus 21 D~lLRC~IC~eyf~ip---~itp-CsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~ 71 (442)
T KOG0287|consen 21 DDLLRCGICFEYFNIP---MITP-CSHTFCSLCIRKFLSYKPQCPTCCVTVTESD 71 (442)
T ss_pred HHHHHHhHHHHHhcCc---eecc-ccchHHHHHHHHHhccCCCCCceecccchhh
Confidence 3457899999999998 5666 9999999999999999999999999887654
No 26
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=2.6e-10 Score=62.85 Aligned_cols=50 Identities=28% Similarity=0.653 Sum_probs=37.2
Q ss_pred ccccccccccccC--------CC-ceeEcCCCCCcchHHhHHHHHhc---CCCccccccccc
Q 036506 9 YCYCTVCLDGISD--------GQ-KFRRLPECKHCFHVECIDAWFQS---RSTCPLCRIEVA 58 (86)
Q Consensus 9 ~~~C~ICl~~~~~--------~~-~~~~~~~C~H~fh~~Ci~~wl~~---~~~CP~Cr~~~~ 58 (86)
+..|.||...|.. ++ ...++..|.|.||..||.+|+.. ...||+||+.+.
T Consensus 20 ~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 20 DETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 3489999888852 11 12233369999999999999985 457999999875
No 27
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=1.5e-09 Score=62.99 Aligned_cols=49 Identities=31% Similarity=0.731 Sum_probs=37.3
Q ss_pred cccccccccc-------------cCCCceeEcCCCCCcchHHhHHHHHhcCCCccccccccc
Q 036506 10 CYCTVCLDGI-------------SDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVA 58 (86)
Q Consensus 10 ~~C~ICl~~~-------------~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 58 (86)
..|+||...+ ...+..+.-..|.|.||..||.+||+++..||++.+.+.
T Consensus 47 DnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW~ 108 (114)
T KOG2930|consen 47 DNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEWV 108 (114)
T ss_pred chhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCccee
Confidence 4688887654 122333444469999999999999999999999988764
No 28
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=2.2e-09 Score=71.32 Aligned_cols=50 Identities=30% Similarity=0.658 Sum_probs=40.7
Q ss_pred CcccccccccccccCCCceeEcCCCCCcchHHhHHH-HHhcCCC-ccccccccchh
Q 036506 7 PYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDA-WFQSRST-CPLCRIEVAIV 60 (86)
Q Consensus 7 ~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~-wl~~~~~-CP~Cr~~~~~~ 60 (86)
..+..|+||++....+ ..++ |||+||..||.. |-.++.. ||+||+...+.
T Consensus 213 ~~d~kC~lC~e~~~~p---s~t~-CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk 264 (271)
T COG5574 213 LADYKCFLCLEEPEVP---SCTP-CGHLFCLSCLLISWTKKKYEFCPLCRAKVYPK 264 (271)
T ss_pred ccccceeeeecccCCc---cccc-ccchhhHHHHHHHHHhhccccCchhhhhccch
Confidence 3577899999998877 4565 999999999999 7666554 99999987654
No 29
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.80 E-value=6.2e-09 Score=57.37 Aligned_cols=51 Identities=22% Similarity=0.414 Sum_probs=40.5
Q ss_pred CCcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhc-CCCccccccccchh
Q 036506 6 CPYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQS-RSTCPLCRIEVAIV 60 (86)
Q Consensus 6 ~~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~~~~~ 60 (86)
.|+...|+|+.+.+.++ ++++ +||.|.+.+|.+|+++ +..||+++..+...
T Consensus 1 iP~~f~CpIt~~lM~dP---Vi~~-~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~ 52 (73)
T PF04564_consen 1 IPDEFLCPITGELMRDP---VILP-SGHTYERSAIERWLEQNGGTDPFTRQPLSES 52 (73)
T ss_dssp SSGGGB-TTTSSB-SSE---EEET-TSEEEEHHHHHHHHCTTSSB-TTT-SB-SGG
T ss_pred CCcccCCcCcCcHhhCc---eeCC-cCCEEcHHHHHHHHHcCCCCCCCCCCcCCcc
Confidence 47889999999999988 5677 9999999999999998 88999999887653
No 30
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=98.76 E-value=1.1e-09 Score=60.04 Aligned_cols=51 Identities=27% Similarity=0.656 Sum_probs=24.6
Q ss_pred ccccccccccccCCCc--eeEcC--CCCCcchHHhHHHHHhc---C--------CCccccccccch
Q 036506 9 YCYCTVCLDGISDGQK--FRRLP--ECKHCFHVECIDAWFQS---R--------STCPLCRIEVAI 59 (86)
Q Consensus 9 ~~~C~ICl~~~~~~~~--~~~~~--~C~H~fh~~Ci~~wl~~---~--------~~CP~Cr~~~~~ 59 (86)
+.+|+||++.+...+. ..+.+ .|+..||..||.+||.. . ..||.|+.++..
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 5789999998663222 23332 69999999999999973 1 159999998754
No 31
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.76 E-value=6e-09 Score=52.04 Aligned_cols=34 Identities=26% Similarity=0.702 Sum_probs=21.4
Q ss_pred cccccccccCCCc-eeEcCCCCCcchHHhHHHHHhcC
Q 036506 12 CTVCLDGISDGQK-FRRLPECKHCFHVECIDAWFQSR 47 (86)
Q Consensus 12 C~ICl~~~~~~~~-~~~~~~C~H~fh~~Ci~~wl~~~ 47 (86)
|+||++ |..++. .++|+ |||.|+.+||.+++.++
T Consensus 1 CpIc~e-~~~~~n~P~~L~-CGH~~c~~cl~~l~~~~ 35 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLP-CGHVFCKDCLQKLSKKS 35 (43)
T ss_dssp -TTT-----TTSS-EEE-S-SS-EEEHHHHHHHHHH-
T ss_pred CCcccc-ccCCCCCCEEEe-CccHHHHHHHHHHHhcC
Confidence 899999 766443 36677 99999999999999853
No 32
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=3.6e-09 Score=70.74 Aligned_cols=56 Identities=32% Similarity=0.670 Sum_probs=44.1
Q ss_pred CCCcccccccccccccCCC-------ceeEcCCCCCcchHHhHHHHHh--cCCCccccccccchhh
Q 036506 5 KCPYYCYCTVCLDGISDGQ-------KFRRLPECKHCFHVECIDAWFQ--SRSTCPLCRIEVAIVI 61 (86)
Q Consensus 5 ~~~~~~~C~ICl~~~~~~~-------~~~~~~~C~H~fh~~Ci~~wl~--~~~~CP~Cr~~~~~~~ 61 (86)
++-++..|+||-..+.... ++-.+. |+|+||..||..|-. ++++||+|+..+....
T Consensus 220 khl~d~vCaVCg~~~~~s~~eegvienty~Ls-CnHvFHEfCIrGWcivGKkqtCPYCKekVdl~r 284 (328)
T KOG1734|consen 220 KHLSDSVCAVCGQQIDVSVDEEGVIENTYKLS-CNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKR 284 (328)
T ss_pred CCCCcchhHhhcchheeecchhhhhhhheeee-cccchHHHhhhhheeecCCCCCchHHHHhhHhh
Confidence 4467889999999876543 445675 999999999999954 5779999998876543
No 33
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.71 E-value=1.6e-08 Score=51.86 Aligned_cols=42 Identities=31% Similarity=0.907 Sum_probs=31.6
Q ss_pred ccccccccccCCCceeEcCCCC-----CcchHHhHHHHHhc--CCCccccc
Q 036506 11 YCTVCLDGISDGQKFRRLPECK-----HCFHVECIDAWFQS--RSTCPLCR 54 (86)
Q Consensus 11 ~C~ICl~~~~~~~~~~~~~~C~-----H~fh~~Ci~~wl~~--~~~CP~Cr 54 (86)
.|-||++. ..++...+.| |. |.+|..|+.+|+.. +.+||+|+
T Consensus 1 ~CrIC~~~-~~~~~~l~~P-C~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDE-GDEGDPLVSP-CRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCC-CCCCCeeEec-cccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 38899983 3334445677 74 89999999999975 44899985
No 34
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.68 E-value=1.8e-08 Score=68.70 Aligned_cols=52 Identities=21% Similarity=0.418 Sum_probs=38.0
Q ss_pred ccccccccccc-ccCCC-ceeEcCCCCCcchHHhHHHHHhc-CCCccccccccchh
Q 036506 8 YYCYCTVCLDG-ISDGQ-KFRRLPECKHCFHVECIDAWFQS-RSTCPLCRIEVAIV 60 (86)
Q Consensus 8 ~~~~C~ICl~~-~~~~~-~~~~~~~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~~~~~ 60 (86)
++..||||... +.+++ ...+. .|||.||.+|+...+.. ...||.|+..+...
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~-~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~ 56 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVN-VCGHTLCESCVDLLFVRGSGSCPECDTPLRKN 56 (309)
T ss_pred CCCCCCcCCCCCccCcccccccC-CCCCcccHHHHHHHhcCCCCCCCCCCCccchh
Confidence 35689999994 33443 33333 49999999999996654 56899999877654
No 35
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=9e-09 Score=67.47 Aligned_cols=46 Identities=28% Similarity=0.696 Sum_probs=40.4
Q ss_pred CCCcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCccccc
Q 036506 5 KCPYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCR 54 (86)
Q Consensus 5 ~~~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr 54 (86)
...+...|+||++.|..+ .+++ |+|.||..|+..++.....||.||
T Consensus 9 ~~~~~~~C~iC~~~~~~p---~~l~-C~H~~c~~C~~~~~~~~~~Cp~cr 54 (386)
T KOG2177|consen 9 VLQEELTCPICLEYFREP---VLLP-CGHNFCRACLTRSWEGPLSCPVCR 54 (386)
T ss_pred hccccccChhhHHHhhcC---cccc-ccchHhHHHHHHhcCCCcCCcccC
Confidence 346789999999999988 5777 999999999999888556799999
No 36
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.59 E-value=2.5e-08 Score=67.52 Aligned_cols=49 Identities=27% Similarity=0.518 Sum_probs=41.7
Q ss_pred CcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCccccccccch
Q 036506 7 PYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVAI 59 (86)
Q Consensus 7 ~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 59 (86)
..-+.|-||-+.|..+ ... .|||.||..||...|..+..||+||.....
T Consensus 23 Ds~lrC~IC~~~i~ip---~~T-tCgHtFCslCIR~hL~~qp~CP~Cr~~~~e 71 (391)
T COG5432 23 DSMLRCRICDCRISIP---CET-TCGHTFCSLCIRRHLGTQPFCPVCREDPCE 71 (391)
T ss_pred hhHHHhhhhhheeecc---eec-ccccchhHHHHHHHhcCCCCCccccccHHh
Confidence 3456899999999988 344 499999999999999999999999987544
No 37
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=2.1e-08 Score=71.78 Aligned_cols=51 Identities=27% Similarity=0.793 Sum_probs=38.8
Q ss_pred CcccccccccccccCCC---c-----------eeEcCCCCCcchHHhHHHHHhc-CCCccccccccc
Q 036506 7 PYYCYCTVCLDGISDGQ---K-----------FRRLPECKHCFHVECIDAWFQS-RSTCPLCRIEVA 58 (86)
Q Consensus 7 ~~~~~C~ICl~~~~~~~---~-----------~~~~~~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~~~ 58 (86)
..-.+|+|||.++.-.. . -...| |.|+||..|+.+|+.. +-.||+||.+++
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tP-C~HifH~~CL~~WMd~ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTP-CHHIFHRQCLLQWMDTYKLICPVCRCPLP 634 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccc-hHHHHHHHHHHHHHhhhcccCCccCCCCC
Confidence 34568999999864211 0 12446 9999999999999995 558999999875
No 38
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.56 E-value=1.5e-08 Score=76.98 Aligned_cols=53 Identities=36% Similarity=0.787 Sum_probs=40.6
Q ss_pred CCcccccccccccccCCC---ceeEcCCCCCcchHHhHHHHHhc--CCCccccccccc
Q 036506 6 CPYYCYCTVCLDGISDGQ---KFRRLPECKHCFHVECIDAWFQS--RSTCPLCRIEVA 58 (86)
Q Consensus 6 ~~~~~~C~ICl~~~~~~~---~~~~~~~C~H~fh~~Ci~~wl~~--~~~CP~Cr~~~~ 58 (86)
-+.-.+|+||+..+..-+ +-...+.|.|.||..|+-+|++. ++.||+||..++
T Consensus 1466 fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1466 FSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred cCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 356689999999876211 11355579999999999999996 457999998764
No 39
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=8.5e-08 Score=66.93 Aligned_cols=51 Identities=31% Similarity=1.011 Sum_probs=37.7
Q ss_pred CcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhc---CCCcccccccc
Q 036506 7 PYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQS---RSTCPLCRIEV 57 (86)
Q Consensus 7 ~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~---~~~CP~Cr~~~ 57 (86)
+....|.||.+-+-....+.....|||+||..|+.+|+.. ++.||+|+-.+
T Consensus 2 pi~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~ 55 (465)
T KOG0827|consen 2 PIMAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKL 55 (465)
T ss_pred CccceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecc
Confidence 4567899995554444444444459999999999999985 35899999443
No 40
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.45 E-value=2.4e-08 Score=53.53 Aligned_cols=47 Identities=30% Similarity=0.682 Sum_probs=24.0
Q ss_pred cccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCccccccccch
Q 036506 8 YYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVAI 59 (86)
Q Consensus 8 ~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 59 (86)
+-..|++|.+.++.+ +.+..|.|+||..||..-+. ..||+|+.+...
T Consensus 6 ~lLrCs~C~~~l~~p---v~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~ 52 (65)
T PF14835_consen 6 ELLRCSICFDILKEP---VCLGGCEHIFCSSCIRDCIG--SECPVCHTPAWI 52 (65)
T ss_dssp HTTS-SSS-S--SS----B---SSS--B-TTTGGGGTT--TB-SSS--B-S-
T ss_pred HhcCCcHHHHHhcCC---ceeccCccHHHHHHhHHhcC--CCCCCcCChHHH
Confidence 456899999999887 34456999999999977444 459999987543
No 41
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=2.7e-08 Score=68.55 Aligned_cols=51 Identities=27% Similarity=0.599 Sum_probs=42.4
Q ss_pred CcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhc-CCCccccccccchh
Q 036506 7 PYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQS-RSTCPLCRIEVAIV 60 (86)
Q Consensus 7 ~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~~~~~ 60 (86)
..+..|+|||+.++... ..+.|.|.||.+||..-++. ++.||.||+.+...
T Consensus 41 ~~~v~c~icl~llk~tm---ttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Sk 92 (381)
T KOG0311|consen 41 DIQVICPICLSLLKKTM---TTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSK 92 (381)
T ss_pred hhhhccHHHHHHHHhhc---ccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcccc
Confidence 46789999999998763 44469999999999998875 77899999987654
No 42
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=98.33 E-value=2.5e-07 Score=65.53 Aligned_cols=49 Identities=31% Similarity=0.846 Sum_probs=38.7
Q ss_pred CcccccccccccccCCC-ceeEcCCCCCcchHHhHHHHHhcCCCccccccccc
Q 036506 7 PYYCYCTVCLDGISDGQ-KFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVA 58 (86)
Q Consensus 7 ~~~~~C~ICl~~~~~~~-~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 58 (86)
.+--+|||||+.+.... .+.... |.|.||-.|+..|.. .+||+||....
T Consensus 173 tELPTCpVCLERMD~s~~gi~t~~-c~Hsfh~~cl~~w~~--~scpvcR~~q~ 222 (493)
T KOG0804|consen 173 TELPTCPVCLERMDSSTTGILTIL-CNHSFHCSCLMKWWD--SSCPVCRYCQS 222 (493)
T ss_pred ccCCCcchhHhhcCccccceeeee-cccccchHHHhhccc--CcChhhhhhcC
Confidence 45678999999987654 344555 999999999999964 57999997654
No 43
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=2.1e-07 Score=48.36 Aligned_cols=47 Identities=28% Similarity=0.593 Sum_probs=36.4
Q ss_pred ccccccccccccCCCceeEcCCCCC-cchHHhHHHHHh-cCCCccccccccch
Q 036506 9 YCYCTVCLDGISDGQKFRRLPECKH-CFHVECIDAWFQ-SRSTCPLCRIEVAI 59 (86)
Q Consensus 9 ~~~C~ICl~~~~~~~~~~~~~~C~H-~fh~~Ci~~wl~-~~~~CP~Cr~~~~~ 59 (86)
+.+|.||++...+. ++..||| -.|..|-.+.++ .+..||+||+++..
T Consensus 7 ~dECTICye~pvds----VlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~d 55 (62)
T KOG4172|consen 7 SDECTICYEHPVDS----VLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKD 55 (62)
T ss_pred ccceeeeccCcchH----HHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHH
Confidence 47999999985554 3334999 578889888766 58899999997753
No 44
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=7.2e-07 Score=61.59 Aligned_cols=50 Identities=28% Similarity=0.691 Sum_probs=41.9
Q ss_pred CcccccccccccccCCCceeEcCCCCC-cchHHhHHHHHhcCCCccccccccchh
Q 036506 7 PYYCYCTVCLDGISDGQKFRRLPECKH-CFHVECIDAWFQSRSTCPLCRIEVAIV 60 (86)
Q Consensus 7 ~~~~~C~ICl~~~~~~~~~~~~~~C~H-~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 60 (86)
....+|.|||.+.++- .++| |.| -.|.+|.+...-+++.||+||+++...
T Consensus 288 ~~gkeCVIClse~rdt---~vLP-CRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~l 338 (349)
T KOG4265|consen 288 ESGKECVICLSESRDT---VVLP-CRHLCLCSGCAKSLRYQTNNCPICRQPIEEL 338 (349)
T ss_pred cCCCeeEEEecCCcce---EEec-chhhehhHhHHHHHHHhhcCCCccccchHhh
Confidence 5578999999996654 6888 999 689999999877899999999987643
No 45
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=7.4e-07 Score=61.77 Aligned_cols=52 Identities=31% Similarity=0.890 Sum_probs=40.2
Q ss_pred CcccccccccccccCCC----ceeEcCCCCCcchHHhHHHHH--hc-----CCCccccccccc
Q 036506 7 PYYCYCTVCLDGISDGQ----KFRRLPECKHCFHVECIDAWF--QS-----RSTCPLCRIEVA 58 (86)
Q Consensus 7 ~~~~~C~ICl~~~~~~~----~~~~~~~C~H~fh~~Ci~~wl--~~-----~~~CP~Cr~~~~ 58 (86)
..+..|.||++.+.... ...++|.|.|.||..||..|- .+ .+.||.||....
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 45789999999875532 123556799999999999998 44 578999998643
No 46
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=6.5e-07 Score=66.50 Aligned_cols=48 Identities=25% Similarity=0.688 Sum_probs=39.0
Q ss_pred cccccccccccccCCCceeEcCCCCCcchHHhHHHHHhc-CCCccccccccch
Q 036506 8 YYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQS-RSTCPLCRIEVAI 59 (86)
Q Consensus 8 ~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 59 (86)
+-+.|++|-..+.+. +++.|+|.||..|+.+.+.. .+.||.|...|..
T Consensus 642 ~~LkCs~Cn~R~Kd~----vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFga 690 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKDA----VITKCGHVFCEECVQTRYETRQRKCPKCNAAFGA 690 (698)
T ss_pred hceeCCCccCchhhH----HHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 446899999776654 44459999999999998874 7789999998864
No 47
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=1.1e-06 Score=59.72 Aligned_cols=50 Identities=26% Similarity=0.545 Sum_probs=40.6
Q ss_pred cccccccccccccCCCceeEcCCCCCcchHHhHHHHHhc-CCCccccccccchhh
Q 036506 8 YYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQS-RSTCPLCRIEVAIVI 61 (86)
Q Consensus 8 ~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~~~~~~ 61 (86)
-..+|+||+....-+ +.++ |+|.||.-||..-... ...|++||.++....
T Consensus 6 ~~~eC~IC~nt~n~P---v~l~-C~HkFCyiCiKGsy~ndk~~CavCR~pids~i 56 (324)
T KOG0824|consen 6 KKKECLICYNTGNCP---VNLY-CFHKFCYICIKGSYKNDKKTCAVCRFPIDSTI 56 (324)
T ss_pred cCCcceeeeccCCcC---cccc-ccchhhhhhhcchhhcCCCCCceecCCCCcch
Confidence 456899999987766 4565 9999999999887665 567999999987654
No 48
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=98.11 E-value=1.7e-06 Score=60.91 Aligned_cols=53 Identities=23% Similarity=0.563 Sum_probs=44.2
Q ss_pred CCcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCccccccccchhh
Q 036506 6 CPYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVAIVI 61 (86)
Q Consensus 6 ~~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 61 (86)
-++++.|+||...+.++.. .. .|||.||..|+..|+..+..||.|+..+....
T Consensus 18 ~~~~l~C~~C~~vl~~p~~--~~-~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~ 70 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQ--TT-TCGHRFCAGCLLESLSNHQKCPVCRQELTQAE 70 (391)
T ss_pred CcccccCccccccccCCCC--CC-CCCCcccccccchhhccCcCCcccccccchhh
Confidence 4678999999999988722 12 49999999999999999999999988766543
No 49
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=2.1e-06 Score=60.53 Aligned_cols=51 Identities=31% Similarity=0.666 Sum_probs=44.5
Q ss_pred CCCcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCccccccccch
Q 036506 5 KCPYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVAI 59 (86)
Q Consensus 5 ~~~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 59 (86)
....+.+|.||+..+..+ ++++ |||.||..||.+-+.+...||.||..+..
T Consensus 80 ~~~sef~c~vc~~~l~~p---v~tp-cghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 80 EIRSEFECCVCSRALYPP---VVTP-CGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cccchhhhhhhHhhcCCC---cccc-ccccccHHHHHHHhccCCCCccccccccc
Confidence 347889999999998877 4666 99999999999988888899999998874
No 50
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.09 E-value=7e-07 Score=67.06 Aligned_cols=52 Identities=29% Similarity=0.516 Sum_probs=41.2
Q ss_pred cccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCccccccccchh
Q 036506 8 YYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVAIV 60 (86)
Q Consensus 8 ~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 60 (86)
....|++|+..+.+.......+ |+|.||..||..|-+...+||+||..|...
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~-c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v 173 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKH-TAHYFCEECVGSWSRCAQTCPVDRGEFGEV 173 (1134)
T ss_pred hhhhhhHHHHHHHHHhhccccc-cccccHHHHhhhhhhhcccCchhhhhhhee
Confidence 3456788887776654444554 999999999999999999999999987643
No 51
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=3.3e-06 Score=59.46 Aligned_cols=51 Identities=27% Similarity=0.707 Sum_probs=38.1
Q ss_pred cccccccccccccCC-CceeEcCCCCCcchHHhHHHHHhc--CCCccccccccc
Q 036506 8 YYCYCTVCLDGISDG-QKFRRLPECKHCFHVECIDAWFQS--RSTCPLCRIEVA 58 (86)
Q Consensus 8 ~~~~C~ICl~~~~~~-~~~~~~~~C~H~fh~~Ci~~wl~~--~~~CP~Cr~~~~ 58 (86)
....||||++.+.-+ +...+.+.|||.|..+||++||.+ ...||.|...-.
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~kat 56 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKAT 56 (463)
T ss_pred ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhH
Confidence 356899999987643 333344469999999999999964 347999976543
No 52
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.99 E-value=3.8e-06 Score=44.27 Aligned_cols=44 Identities=25% Similarity=0.505 Sum_probs=28.6
Q ss_pred CCcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhc--CCCccc
Q 036506 6 CPYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQS--RSTCPL 52 (86)
Q Consensus 6 ~~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~--~~~CP~ 52 (86)
..-+..|||.+..|.+| +....|||.|-+..|.+|+++ ...||+
T Consensus 8 ~~~~~~CPiT~~~~~~P---V~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 8 GTISLKCPITLQPFEDP---VKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp SB--SB-TTTSSB-SSE---EEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred cEeccCCCCcCChhhCC---cCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 45678999999999977 333359999999999999954 446998
No 53
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.98 E-value=2.3e-06 Score=58.29 Aligned_cols=52 Identities=27% Similarity=0.756 Sum_probs=42.3
Q ss_pred cccccccccccccCCCceeEcCCCCCcchHHhHHHHHhc-----------------------CCCccccccccchh
Q 036506 8 YYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQS-----------------------RSTCPLCRIEVAIV 60 (86)
Q Consensus 8 ~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~-----------------------~~~CP~Cr~~~~~~ 60 (86)
....|.|||.-|.++..+.+.+ |.|.||..|+.++|.. ...||+||..+...
T Consensus 114 p~gqCvICLygfa~~~~ft~T~-C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e 188 (368)
T KOG4445|consen 114 PNGQCVICLYGFASSPAFTVTA-CDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIE 188 (368)
T ss_pred CCCceEEEEEeecCCCceeeeh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcccc
Confidence 4578999999999988777776 9999999999988731 22699999987654
No 54
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.73 E-value=6.6e-06 Score=56.43 Aligned_cols=51 Identities=25% Similarity=0.569 Sum_probs=42.6
Q ss_pred CCcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCccccccccch
Q 036506 6 CPYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVAI 59 (86)
Q Consensus 6 ~~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 59 (86)
.-....|.+|-.+|.++.. ...|-|.||++||...|.....||+|...+..
T Consensus 12 ~n~~itC~LC~GYliDATT---I~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~ 62 (331)
T KOG2660|consen 12 LNPHITCRLCGGYLIDATT---ITECLHTFCKSCIVKYLEESKYCPTCDIVIHK 62 (331)
T ss_pred cccceehhhccceeecchh---HHHHHHHHHHHHHHHHHHHhccCCccceeccC
Confidence 3556789999999987743 33599999999999999999999999877654
No 55
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=3.3e-05 Score=51.00 Aligned_cols=55 Identities=25% Similarity=0.598 Sum_probs=46.0
Q ss_pred CCCCcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhc--------CCCccccccccchh
Q 036506 4 AKCPYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQS--------RSTCPLCRIEVAIV 60 (86)
Q Consensus 4 ~~~~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~--------~~~CP~Cr~~~~~~ 60 (86)
.|+.++..|.+|--.+..++.++.. |-|.||..|+..|..+ .-.||.|..++...
T Consensus 45 ~DsDY~pNC~LC~t~La~gdt~RLv--CyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp 107 (299)
T KOG3970|consen 45 QDSDYNPNCRLCNTPLASGDTTRLV--CYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPP 107 (299)
T ss_pred hhcCCCCCCceeCCccccCcceeeh--hhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCC
Confidence 4778899999999999999887654 9999999999999764 23799998886644
No 56
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=6.5e-05 Score=50.67 Aligned_cols=53 Identities=25% Similarity=0.338 Sum_probs=41.2
Q ss_pred CCCCcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhc--CCCccccccccch
Q 036506 4 AKCPYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQS--RSTCPLCRIEVAI 59 (86)
Q Consensus 4 ~~~~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~--~~~CP~Cr~~~~~ 59 (86)
+...++.+|++|-+....|. ... .|+|+||.-||..-+.. ...||.|..+..+
T Consensus 234 s~~t~~~~C~~Cg~~PtiP~--~~~-~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~~ 288 (298)
T KOG2879|consen 234 STGTSDTECPVCGEPPTIPH--VIG-KCGHIYCYYCIATSRLWDASFTCPLCGENVEP 288 (298)
T ss_pred ccccCCceeeccCCCCCCCe--eec-cccceeehhhhhhhhcchhhcccCccCCCCcc
Confidence 34478899999999977663 344 49999999999886653 5689999887653
No 57
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.58 E-value=3.2e-05 Score=50.18 Aligned_cols=44 Identities=23% Similarity=0.532 Sum_probs=37.6
Q ss_pred ccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCccccccc
Q 036506 9 YCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIE 56 (86)
Q Consensus 9 ~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~ 56 (86)
...|.||-.+|..+ ++..|||.||..|..+-++....|-+|...
T Consensus 196 PF~C~iCKkdy~sp----vvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~ 239 (259)
T COG5152 196 PFLCGICKKDYESP----VVTECGHSFCSLCAIRKYQKGDECGVCGKA 239 (259)
T ss_pred ceeehhchhhccch----hhhhcchhHHHHHHHHHhccCCcceecchh
Confidence 34799999999988 334599999999999999989999999664
No 58
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=97.51 E-value=9.9e-05 Score=37.51 Aligned_cols=45 Identities=22% Similarity=0.564 Sum_probs=22.9
Q ss_pred cccccccccCCC-ceeEcCCCCCcchHHhHHHHHh-cCCCcccccccc
Q 036506 12 CTVCLDGISDGQ-KFRRLPECKHCFHVECIDAWFQ-SRSTCPLCRIEV 57 (86)
Q Consensus 12 C~ICl~~~~~~~-~~~~~~~C~H~fh~~Ci~~wl~-~~~~CP~Cr~~~ 57 (86)
||+|.+++...+ .+.-. .|+..++..|...-++ ....||-||.++
T Consensus 1 cp~C~e~~d~~d~~~~PC-~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPC-ECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SS-TTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccC-cCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 789999985433 33333 4899999999998886 478999999865
No 59
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.48 E-value=4.4e-05 Score=53.85 Aligned_cols=48 Identities=31% Similarity=0.850 Sum_probs=38.3
Q ss_pred cccccccccccccC-CCceeEcCCCCCcchHHhHHHHHhcC--CCccccccc
Q 036506 8 YYCYCTVCLDGISD-GQKFRRLPECKHCFHVECIDAWFQSR--STCPLCRIE 56 (86)
Q Consensus 8 ~~~~C~ICl~~~~~-~~~~~~~~~C~H~fh~~Ci~~wl~~~--~~CP~Cr~~ 56 (86)
-++.|..|-+.+-. ++....+| |.|+||..|+...|.++ ++||-||+.
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALp-CsHIfH~rCl~e~L~~n~~rsCP~Crkl 414 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALP-CSHIFHLRCLQEILENNGTRSCPNCRKL 414 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccc-hhHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 45779999887643 34567888 99999999999999764 589999943
No 60
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=97.44 E-value=6.6e-05 Score=45.77 Aligned_cols=36 Identities=19% Similarity=0.522 Sum_probs=29.7
Q ss_pred ccccccccccccCCCceeEcCCCC------CcchHHhHHHHHh
Q 036506 9 YCYCTVCLDGISDGQKFRRLPECK------HCFHVECIDAWFQ 45 (86)
Q Consensus 9 ~~~C~ICl~~~~~~~~~~~~~~C~------H~fh~~Ci~~wl~ 45 (86)
..+|.||++.+.+.+.++.++ || |+||.+|+.+|-+
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt-~~g~lnLEkmfc~~C~~rw~~ 67 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVT-DGGTLNLEKMFCADCDKRWRR 67 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEe-cCCeehHHHHHHHHHHHHHHh
Confidence 789999999998856666666 63 7999999999943
No 61
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=97.39 E-value=8.3e-05 Score=56.46 Aligned_cols=50 Identities=28% Similarity=0.680 Sum_probs=41.0
Q ss_pred CcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcC-------CCccccccc
Q 036506 7 PYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSR-------STCPLCRIE 56 (86)
Q Consensus 7 ~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~-------~~CP~Cr~~ 56 (86)
..-.+|.||++.+.....+.....|-|+||..||..|.++. =.||.|+..
T Consensus 189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv 245 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSV 245 (950)
T ss_pred cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccch
Confidence 45679999999998887777666799999999999998751 159999843
No 62
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.39 E-value=7.8e-05 Score=52.83 Aligned_cols=45 Identities=33% Similarity=0.885 Sum_probs=35.4
Q ss_pred cccccccccccCCCceeEcCCCCCcchHHhHHHHHhc--CCCccccccccc
Q 036506 10 CYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQS--RSTCPLCRIEVA 58 (86)
Q Consensus 10 ~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~--~~~CP~Cr~~~~ 58 (86)
.-|.||-+.- +.|++-| |||..|..|+..|-.. .+.||.||..+.
T Consensus 370 eLCKICaend---KdvkIEP-CGHLlCt~CLa~WQ~sd~gq~CPFCRcEIK 416 (563)
T KOG1785|consen 370 ELCKICAEND---KDVKIEP-CGHLLCTSCLAAWQDSDEGQTCPFCRCEIK 416 (563)
T ss_pred HHHHHhhccC---CCccccc-ccchHHHHHHHhhcccCCCCCCCceeeEec
Confidence 3588887752 3456777 9999999999999754 678999998764
No 63
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.00012 Score=49.74 Aligned_cols=46 Identities=20% Similarity=0.422 Sum_probs=38.5
Q ss_pred cccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCcccccccc
Q 036506 8 YYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEV 57 (86)
Q Consensus 8 ~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~ 57 (86)
-+..|-||..+|..+ +...|+|.||..|...-++....|++|....
T Consensus 240 ~Pf~c~icr~~f~~p----Vvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t 285 (313)
T KOG1813|consen 240 LPFKCFICRKYFYRP----VVTKCGHYFCEVCALKPYQKGEKCYVCSQQT 285 (313)
T ss_pred CCccccccccccccc----hhhcCCceeehhhhccccccCCcceeccccc
Confidence 345699999999988 3445999999999999888889999997653
No 64
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.19 E-value=0.00037 Score=46.63 Aligned_cols=54 Identities=15% Similarity=0.207 Sum_probs=47.9
Q ss_pred cccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCccccccccchhh
Q 036506 8 YYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVAIVI 61 (86)
Q Consensus 8 ~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 61 (86)
....||||.+.+.+.....+|..|||+|...|++++++....||+|-.++....
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrd 273 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRD 273 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccc
Confidence 567899999999998888888789999999999999999999999988876544
No 65
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.0004 Score=47.94 Aligned_cols=57 Identities=21% Similarity=0.352 Sum_probs=44.2
Q ss_pred CCCCCCCcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCccccccccchh
Q 036506 1 ETAAKCPYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVAIV 60 (86)
Q Consensus 1 ~t~~~~~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 60 (86)
|+.-..+....||||+....++. ++..-|-+||..|+..++.+++.||+=..+....
T Consensus 292 e~e~l~~~~~~CpvClk~r~Npt---vl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~~v~ 348 (357)
T KOG0826|consen 292 ESELLPPDREVCPVCLKKRQNPT---VLEVSGYVFCYPCIFSYVVNYGHCPVTGYPASVD 348 (357)
T ss_pred ccccCCCccccChhHHhccCCCc---eEEecceEEeHHHHHHHHHhcCCCCccCCcchHH
Confidence 34455677889999999988773 3333699999999999999999999866555443
No 66
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=97.08 E-value=0.0002 Score=41.30 Aligned_cols=33 Identities=30% Similarity=0.701 Sum_probs=27.5
Q ss_pred CcccccccccccccCCCceeEcCCCCCcchHHhHH
Q 036506 7 PYYCYCTVCLDGISDGQKFRRLPECKHCFHVECID 41 (86)
Q Consensus 7 ~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~ 41 (86)
.++..|++|-..+.. ....+.| |||.||..|+.
T Consensus 76 ~~~~~C~vC~k~l~~-~~f~~~p-~~~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGN-SVFVVFP-CGHVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCC-ceEEEeC-CCeEEeccccc
Confidence 567889999999877 4566777 99999999975
No 67
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=97.07 E-value=0.00038 Score=35.14 Aligned_cols=41 Identities=29% Similarity=0.957 Sum_probs=25.6
Q ss_pred cccccccccCCCceeEcC-CCCC---cchHHhHHHHHhc--CCCcccc
Q 036506 12 CTVCLDGISDGQKFRRLP-ECKH---CFHVECIDAWFQS--RSTCPLC 53 (86)
Q Consensus 12 C~ICl~~~~~~~~~~~~~-~C~H---~fh~~Ci~~wl~~--~~~CP~C 53 (86)
|-||++.-..... .+.| .|.- ..|..|+.+|+.. +..|++|
T Consensus 1 CrIC~~~~~~~~~-li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEP-LISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCc-eecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 6789998665442 2344 2444 7899999999984 5578876
No 68
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=97.05 E-value=0.00086 Score=42.02 Aligned_cols=52 Identities=23% Similarity=0.532 Sum_probs=37.8
Q ss_pred CCCcccccccccccccCCCceeEcC-CCCC---cchHHhHHHHHhc--CCCccccccccchh
Q 036506 5 KCPYYCYCTVCLDGISDGQKFRRLP-ECKH---CFHVECIDAWFQS--RSTCPLCRIEVAIV 60 (86)
Q Consensus 5 ~~~~~~~C~ICl~~~~~~~~~~~~~-~C~H---~fh~~Ci~~wl~~--~~~CP~Cr~~~~~~ 60 (86)
.+..+..|-||.+.-... ..| .|.. ..|.+|+.+|+.. ...|++|+.++...
T Consensus 4 ~s~~~~~CRIC~~~~~~~----~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~ 61 (162)
T PHA02825 4 VSLMDKCCWICKDEYDVV----TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIK 61 (162)
T ss_pred cCCCCCeeEecCCCCCCc----cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEE
Confidence 456778999999984322 234 2544 6699999999986 45799999987654
No 69
>PHA02862 5L protein; Provisional
Probab=97.02 E-value=0.00072 Score=41.79 Aligned_cols=47 Identities=23% Similarity=0.651 Sum_probs=34.3
Q ss_pred ccccccccccccCCCceeEcC-CC---CCcchHHhHHHHHhc--CCCccccccccch
Q 036506 9 YCYCTVCLDGISDGQKFRRLP-EC---KHCFHVECIDAWFQS--RSTCPLCRIEVAI 59 (86)
Q Consensus 9 ~~~C~ICl~~~~~~~~~~~~~-~C---~H~fh~~Ci~~wl~~--~~~CP~Cr~~~~~ 59 (86)
+..|=||++.-.+. .-| .| -...|..|+.+|++. +..|++|+.++..
T Consensus 2 ~diCWIC~~~~~e~----~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 2 SDICWICNDVCDER----NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred CCEEEEecCcCCCC----cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 35689999984432 233 13 357899999999985 4579999998754
No 70
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=97.02 E-value=0.00053 Score=55.38 Aligned_cols=54 Identities=24% Similarity=0.616 Sum_probs=41.0
Q ss_pred CCCcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcC----------CCccccccccch
Q 036506 5 KCPYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSR----------STCPLCRIEVAI 59 (86)
Q Consensus 5 ~~~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~----------~~CP~Cr~~~~~ 59 (86)
+...+..|-||+-+--.......+. |+|+||..|..+-|++. -+||+|+.++..
T Consensus 3482 kQD~DDmCmICFTE~L~AAP~IqL~-C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3482 KQDADDMCMICFTEALSAAPAIQLD-CSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred hcccCceEEEEehhhhCCCcceecC-CccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence 4567889999998755555556776 99999999998776641 179999987643
No 71
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=97.02 E-value=0.00092 Score=34.74 Aligned_cols=35 Identities=31% Similarity=0.714 Sum_probs=30.7
Q ss_pred cccccccccccccCCCceeEcCCCCCcchHHhHHH
Q 036506 8 YYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDA 42 (86)
Q Consensus 8 ~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~ 42 (86)
....|++|-+.|.+++.+++.+.||-.+|+.|...
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 45679999999998888899999999999999654
No 72
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.00071 Score=43.36 Aligned_cols=54 Identities=26% Similarity=0.669 Sum_probs=36.0
Q ss_pred CCCcccccccccccccCC---Cce-eEcCCCCCcchHHhHHHHHhc---C--------CCccccccccch
Q 036506 5 KCPYYCYCTVCLDGISDG---QKF-RRLPECKHCFHVECIDAWFQS---R--------STCPLCRIEVAI 59 (86)
Q Consensus 5 ~~~~~~~C~ICl~~~~~~---~~~-~~~~~C~H~fh~~Ci~~wl~~---~--------~~CP~Cr~~~~~ 59 (86)
++.+-..|.||+.+-.++ +.+ -.. .||..||.-|+..||+. . ..||+|..++..
T Consensus 161 kdd~~~~cgicyayqldGTipDqtCdN~-qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial 229 (234)
T KOG3268|consen 161 KDDELGACGICYAYQLDGTIPDQTCDNI-QCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL 229 (234)
T ss_pred cchhhhcccceeeeecCCcccccccccc-ccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence 345556778887753332 211 122 49999999999999974 1 159999887653
No 73
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.89 E-value=0.0004 Score=50.91 Aligned_cols=50 Identities=32% Similarity=0.618 Sum_probs=38.7
Q ss_pred CcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhc-----CCCccccccccchh
Q 036506 7 PYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQS-----RSTCPLCRIEVAIV 60 (86)
Q Consensus 7 ~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~-----~~~CP~Cr~~~~~~ 60 (86)
.++.+|.+|-++-++. +...|.|.||+.|+..+... +-+||+|...+..+
T Consensus 534 k~~~~C~lc~d~aed~----i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 534 KGEVECGLCHDPAEDY----IESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID 588 (791)
T ss_pred cCceeecccCChhhhh----HhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence 4678999999986655 33349999999999888763 45799998876654
No 74
>PHA03096 p28-like protein; Provisional
Probab=96.87 E-value=0.00062 Score=46.38 Aligned_cols=46 Identities=33% Similarity=0.665 Sum_probs=32.6
Q ss_pred cccccccccccCC----CceeEcCCCCCcchHHhHHHHHhc---CCCcccccc
Q 036506 10 CYCTVCLDGISDG----QKFRRLPECKHCFHVECIDAWFQS---RSTCPLCRI 55 (86)
Q Consensus 10 ~~C~ICl~~~~~~----~~~~~~~~C~H~fh~~Ci~~wl~~---~~~CP~Cr~ 55 (86)
-.|.||++..... ..-..++.|.|.||..|+..|... ..+||.||.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 5799999976532 122466779999999999999864 334555544
No 75
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=96.81 E-value=0.00071 Score=33.57 Aligned_cols=41 Identities=32% Similarity=0.909 Sum_probs=22.5
Q ss_pred cccccccccCCCceeEcCCCCCcchHHhHHHHHhcCC--Ccccc
Q 036506 12 CTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRS--TCPLC 53 (86)
Q Consensus 12 C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~--~CP~C 53 (86)
|.+|.+.+..+...... .|+-.+|..|+..+++... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~-~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNR-DCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS---S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCC-ccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 56777776665322221 3888999999999998754 69987
No 76
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.0011 Score=46.55 Aligned_cols=49 Identities=22% Similarity=0.481 Sum_probs=41.1
Q ss_pred CcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCccccccccch
Q 036506 7 PYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVAI 59 (86)
Q Consensus 7 ~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 59 (86)
.++..|+||+..--.. +..| |+|.-|..||.+-+-+.+.|=.|+..+..
T Consensus 420 sEd~lCpICyA~pi~A---vf~P-C~H~SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINA---VFAP-CSHRSCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred cccccCcceecccchh---hccC-CCCchHHHHHHHHHhcCCeeeEecceeee
Confidence 5778999999864433 4677 99999999999999999999999987653
No 77
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.00091 Score=47.45 Aligned_cols=47 Identities=26% Similarity=0.648 Sum_probs=37.0
Q ss_pred cccccccccccccCCCceeEcCCCCCcchHHhHHHHHhc--------CCCcccccc
Q 036506 8 YYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQS--------RSTCPLCRI 55 (86)
Q Consensus 8 ~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~--------~~~CP~Cr~ 55 (86)
....|.||++.......+..+| |+|+||+.|+..++.. .-.||-+.-
T Consensus 183 slf~C~ICf~e~~G~~c~~~lp-C~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLP-CSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred hcccceeeehhhcCcceeeecc-cchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 3468999999976667888998 9999999999999863 225876543
No 78
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=96.69 E-value=0.001 Score=45.66 Aligned_cols=45 Identities=24% Similarity=0.591 Sum_probs=35.1
Q ss_pred CcccccccccccccCCCceeEcCCC--CCcchHHhHHHHHhcCCCccccccccch
Q 036506 7 PYYCYCTVCLDGISDGQKFRRLPEC--KHCFHVECIDAWFQSRSTCPLCRIEVAI 59 (86)
Q Consensus 7 ~~~~~C~ICl~~~~~~~~~~~~~~C--~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 59 (86)
.+=++||||.+.+..+ +.. | ||..|..|-. +..+.||.||.++..
T Consensus 46 ~~lleCPvC~~~l~~P----i~Q-C~nGHlaCssC~~---~~~~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 46 LDLLDCPVCFNPLSPP----IFQ-CDNGHLACSSCRT---KVSNKCPTCRLPIGN 92 (299)
T ss_pred hhhccCchhhccCccc----cee-cCCCcEehhhhhh---hhcccCCcccccccc
Confidence 4457999999999987 332 5 7999988865 346789999998873
No 79
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=96.56 E-value=0.0023 Score=40.09 Aligned_cols=37 Identities=19% Similarity=0.515 Sum_probs=23.4
Q ss_pred cccccccccccccCCCce---------eEcCCCCC-cchHHhHHHHHh
Q 036506 8 YYCYCTVCLDGISDGQKF---------RRLPECKH-CFHVECIDAWFQ 45 (86)
Q Consensus 8 ~~~~C~ICl~~~~~~~~~---------~~~~~C~H-~fh~~Ci~~wl~ 45 (86)
++..|||||+...+...+ +-.. |+- .-|..|++++-+
T Consensus 1 ed~~CpICme~PHNAVLLlCSS~~kgcRpym-c~Ts~rhSNCLdqfkk 47 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLCSSHEKGCRPYM-CDTSYRHSNCLDQFKK 47 (162)
T ss_pred CCccCceeccCCCceEEEEeccccCCccccc-cCCccchhHHHHHHHH
Confidence 478999999987654211 1111 443 357789999864
No 80
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.0017 Score=45.26 Aligned_cols=50 Identities=28% Similarity=0.618 Sum_probs=36.1
Q ss_pred CCCCCcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCccccccccch
Q 036506 3 AAKCPYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVAI 59 (86)
Q Consensus 3 ~~~~~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 59 (86)
....+-...|.||++...+. ..+| |||.-+ |..- .+...+||+||..+..
T Consensus 299 ~~~~~~p~lcVVcl~e~~~~---~fvp-cGh~cc--ct~c-s~~l~~CPvCR~rI~~ 348 (355)
T KOG1571|consen 299 FRELPQPDLCVVCLDEPKSA---VFVP-CGHVCC--CTLC-SKHLPQCPVCRQRIRL 348 (355)
T ss_pred ccccCCCCceEEecCCccce---eeec-CCcEEE--chHH-HhhCCCCchhHHHHHH
Confidence 44557788999999987663 5777 999865 5443 2335569999987754
No 81
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=96.51 E-value=0.0019 Score=39.39 Aligned_cols=53 Identities=13% Similarity=0.412 Sum_probs=39.4
Q ss_pred cccccccccccccCCCceeEcCCCCCcchHHhHHHHHhc---CCCccccccccchh
Q 036506 8 YYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQS---RSTCPLCRIEVAIV 60 (86)
Q Consensus 8 ~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~---~~~CP~Cr~~~~~~ 60 (86)
.-.+|.||.+...+..-+.--..||-..|..|-...|+. +..||+|++++-..
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 456899999986554333222269999999999887764 67899999988643
No 82
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.47 E-value=0.00099 Score=46.52 Aligned_cols=54 Identities=24% Similarity=0.454 Sum_probs=39.6
Q ss_pred CcccccccccccccCCCc-eeEcCCCCCcchHHhHHHHHhc-CCCccccccccchhh
Q 036506 7 PYYCYCTVCLDGISDGQK-FRRLPECKHCFHVECIDAWFQS-RSTCPLCRIEVAIVI 61 (86)
Q Consensus 7 ~~~~~C~ICl~~~~~~~~-~~~~~~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~~~~~~ 61 (86)
.++..||+|++++...+. ..-.+ ||-..|.-|...--+. +..||-||+.+...+
T Consensus 12 deed~cplcie~mditdknf~pc~-cgy~ic~fc~~~irq~lngrcpacrr~y~den 67 (480)
T COG5175 12 DEEDYCPLCIEPMDITDKNFFPCP-CGYQICQFCYNNIRQNLNGRCPACRRKYDDEN 67 (480)
T ss_pred cccccCcccccccccccCCcccCC-cccHHHHHHHHHHHhhccCCChHhhhhccccc
Confidence 455569999999876554 34455 9999999997664443 678999999876544
No 83
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.0022 Score=43.34 Aligned_cols=47 Identities=26% Similarity=0.637 Sum_probs=37.4
Q ss_pred cccccccccccCCC--ce-eEcCCCCCcchHHhHHHHHhcC-CCcccccccc
Q 036506 10 CYCTVCLDGISDGQ--KF-RRLPECKHCFHVECIDAWFQSR-STCPLCRIEV 57 (86)
Q Consensus 10 ~~C~ICl~~~~~~~--~~-~~~~~C~H~fh~~Ci~~wl~~~-~~CP~Cr~~~ 57 (86)
..|-||-++|+..+ .+ +.+ .|||.|+..|+...+... ..||.||...
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l-~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVL-KCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCccc-ccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 57999999998763 33 444 599999999999988764 4799999984
No 84
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.30 E-value=0.0012 Score=41.70 Aligned_cols=30 Identities=30% Similarity=0.733 Sum_probs=27.0
Q ss_pred CcccccccccccccCCCceeEcCCCCCcchH
Q 036506 7 PYYCYCTVCLDGISDGQKFRRLPECKHCFHV 37 (86)
Q Consensus 7 ~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~ 37 (86)
....+|.|||+++..++.|..+| |--+||+
T Consensus 175 ddkGECvICLEdL~~GdtIARLP-CLCIYHK 204 (205)
T KOG0801|consen 175 DDKGECVICLEDLEAGDTIARLP-CLCIYHK 204 (205)
T ss_pred ccCCcEEEEhhhccCCCceeccc-eEEEeec
Confidence 45679999999999999999999 9988886
No 85
>PF04641 Rtf2: Rtf2 RING-finger
Probab=96.28 E-value=0.0062 Score=40.85 Aligned_cols=54 Identities=19% Similarity=0.330 Sum_probs=42.8
Q ss_pred CCcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCccccccccchh
Q 036506 6 CPYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVAIV 60 (86)
Q Consensus 6 ~~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 60 (86)
......|||....|......+.+-.|||+|-..+|...- ....||+|-.+|...
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~~~ 163 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFTEE 163 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccccC
Confidence 467789999999996655555555599999999999973 356799999988743
No 86
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.15 E-value=0.0038 Score=43.03 Aligned_cols=43 Identities=30% Similarity=0.617 Sum_probs=35.5
Q ss_pred cccccccccccCCCceeEcCCCCCcchHHhHHHHHh-cCCCcccccc
Q 036506 10 CYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQ-SRSTCPLCRI 55 (86)
Q Consensus 10 ~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~-~~~~CP~Cr~ 55 (86)
+.|+.|...+.++. ..+.|+|.||..||...|. ....||.|..
T Consensus 275 LkCplc~~Llrnp~---kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPM---KTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCcc---cCccccchHHHHHHhhhhhhccccCCCccc
Confidence 78999999988773 4467999999999998665 5678999954
No 87
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=96.08 E-value=0.0022 Score=33.41 Aligned_cols=31 Identities=26% Similarity=0.703 Sum_probs=24.6
Q ss_pred eEcCCCCCcchHHhHHHHHhcCCCccccccccch
Q 036506 26 RRLPECKHCFHVECIDAWFQSRSTCPLCRIEVAI 59 (86)
Q Consensus 26 ~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 59 (86)
.+++ |+|..+..|+.. .+-+.||.|.+++..
T Consensus 21 ~~~p-CgH~I~~~~f~~--~rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 21 TVLP-CGHLICDNCFPG--ERYNGCPFCGTPFEF 51 (55)
T ss_pred cccc-ccceeeccccCh--hhccCCCCCCCcccC
Confidence 5777 999999999765 456679999887754
No 88
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=0.0014 Score=44.90 Aligned_cols=43 Identities=26% Similarity=0.623 Sum_probs=31.3
Q ss_pred ccccccccccccCCCceeEcCCCCC-cchHHhHHHHHhcCCCccccccccch
Q 036506 9 YCYCTVCLDGISDGQKFRRLPECKH-CFHVECIDAWFQSRSTCPLCRIEVAI 59 (86)
Q Consensus 9 ~~~C~ICl~~~~~~~~~~~~~~C~H-~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 59 (86)
..-|.|||+... ..+.|+ ||| +-|..|-.+ -+.||+||+.+..
T Consensus 300 ~~LC~ICmDaP~---DCvfLe-CGHmVtCt~CGkr----m~eCPICRqyi~r 343 (350)
T KOG4275|consen 300 RRLCAICMDAPR---DCVFLE-CGHMVTCTKCGKR----MNECPICRQYIVR 343 (350)
T ss_pred HHHHHHHhcCCc---ceEEee-cCcEEeehhhccc----cccCchHHHHHHH
Confidence 678999999744 335777 999 557777544 3489999987643
No 89
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.92 E-value=0.004 Score=41.29 Aligned_cols=45 Identities=33% Similarity=0.740 Sum_probs=30.3
Q ss_pred ccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCccccccccch
Q 036506 11 YCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVAI 59 (86)
Q Consensus 11 ~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 59 (86)
.|.-|.---. ++...++ .|+|+||..|... .....||+|+..+..
T Consensus 5 hCn~C~~~~~-~~~f~LT-aC~HvfC~~C~k~--~~~~~C~lCkk~ir~ 49 (233)
T KOG4739|consen 5 HCNKCFRFPS-QDPFFLT-ACRHVFCEPCLKA--SSPDVCPLCKKSIRI 49 (233)
T ss_pred EeccccccCC-CCceeee-echhhhhhhhccc--CCccccccccceeee
Confidence 4666665433 5555555 4999999999754 223389999998543
No 90
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.90 E-value=0.0089 Score=42.02 Aligned_cols=49 Identities=27% Similarity=0.598 Sum_probs=38.3
Q ss_pred CcccccccccccccCCCceeEcCCCCCcchHHhHHHH--HhcCCCccccccccch
Q 036506 7 PYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAW--FQSRSTCPLCRIEVAI 59 (86)
Q Consensus 7 ~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~w--l~~~~~CP~Cr~~~~~ 59 (86)
+++..|.||-+.+.-. .++| |+|..|..|..+. |-..+.||+||.....
T Consensus 59 Een~~C~ICA~~~TYs---~~~P-C~H~~CH~Ca~RlRALY~~K~C~~CrTE~e~ 109 (493)
T COG5236 59 EENMNCQICAGSTTYS---ARYP-CGHQICHACAVRLRALYMQKGCPLCRTETEA 109 (493)
T ss_pred cccceeEEecCCceEE---Eecc-CCchHHHHHHHHHHHHHhccCCCccccccce
Confidence 5677899998876533 5777 9999999998764 4468899999987543
No 91
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=95.90 E-value=0.0055 Score=41.62 Aligned_cols=46 Identities=24% Similarity=0.547 Sum_probs=36.0
Q ss_pred ccccccccccccCCCce-eEcCCCCCcchHHhHHHHHhcCCCcccccc
Q 036506 9 YCYCTVCLDGISDGQKF-RRLPECKHCFHVECIDAWFQSRSTCPLCRI 55 (86)
Q Consensus 9 ~~~C~ICl~~~~~~~~~-~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~ 55 (86)
...||||.+.+-..... ..++ |||..|..|+......+-.||+|..
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~-CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLK-CGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccC-cccchHHHHHHHHhccCCCCCcccc
Confidence 34499999986554433 4555 9999999999998877788999987
No 92
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.76 E-value=0.0054 Score=47.06 Aligned_cols=43 Identities=23% Similarity=0.663 Sum_probs=33.7
Q ss_pred ccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCcccccccc
Q 036506 9 YCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEV 57 (86)
Q Consensus 9 ~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~ 57 (86)
...|..|-..+..|.. .- .|||.||.+|+. .....||.|+..+
T Consensus 840 ~skCs~C~~~LdlP~V--hF-~CgHsyHqhC~e---~~~~~CP~C~~e~ 882 (933)
T KOG2114|consen 840 VSKCSACEGTLDLPFV--HF-LCGHSYHQHCLE---DKEDKCPKCLPEL 882 (933)
T ss_pred eeeecccCCcccccee--ee-ecccHHHHHhhc---cCcccCCccchhh
Confidence 3679999999887742 22 499999999998 4566899998843
No 93
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=95.75 E-value=0.0065 Score=42.68 Aligned_cols=29 Identities=38% Similarity=1.133 Sum_probs=22.8
Q ss_pred CCCcchHHhHHHHHhc-------------CCCccccccccch
Q 036506 31 CKHCFHVECIDAWFQS-------------RSTCPLCRIEVAI 59 (86)
Q Consensus 31 C~H~fh~~Ci~~wl~~-------------~~~CP~Cr~~~~~ 59 (86)
|..+.|.+|+.+|+.. +..||+||+.+..
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCi 352 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCI 352 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCccccee
Confidence 5677899999999853 2269999998753
No 94
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=95.39 E-value=0.011 Score=44.70 Aligned_cols=47 Identities=34% Similarity=0.757 Sum_probs=36.3
Q ss_pred cccccccccccCCCceeEcCCCCCcchHHhHHHHHhc--CCCccccccccchhh
Q 036506 10 CYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQS--RSTCPLCRIEVAIVI 61 (86)
Q Consensus 10 ~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~--~~~CP~Cr~~~~~~~ 61 (86)
..|.||++ . +.....+ |+|.||..|+...+.. ...||+||..+....
T Consensus 455 ~~c~ic~~-~---~~~~it~-c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~ 503 (674)
T KOG1001|consen 455 HWCHICCD-L---DSFFITR-CGHDFCVECLKKSIQQSENAPCPLCRNVLKEKK 503 (674)
T ss_pred cccccccc-c---ccceeec-ccchHHHHHHHhccccccCCCCcHHHHHHHHHH
Confidence 78999999 2 3334555 9999999999998775 336999998776544
No 95
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.33 E-value=0.019 Score=39.18 Aligned_cols=50 Identities=22% Similarity=0.474 Sum_probs=37.0
Q ss_pred cccccccc-ccCCCceeEcCCCCCcchHHhHHHHHhc-CCCccccccccchh
Q 036506 11 YCTVCLDG-ISDGQKFRRLPECKHCFHVECIDAWFQS-RSTCPLCRIEVAIV 60 (86)
Q Consensus 11 ~C~ICl~~-~~~~~~~~~~~~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~~~~~ 60 (86)
.||+|... |.+++.......|+|..|.+|+...+.. ...||.|...+...
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~ 53 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKN 53 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhc
Confidence 48888873 5555554444459999999999998775 56899998776543
No 96
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=95.07 E-value=0.0093 Score=30.18 Aligned_cols=29 Identities=21% Similarity=0.763 Sum_probs=21.8
Q ss_pred C-CCcchHHhHHHHHhcCCCccccccccch
Q 036506 31 C-KHCFHVECIDAWFQSRSTCPLCRIEVAI 59 (86)
Q Consensus 31 C-~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 59 (86)
| .|..|..|+...+..+..||+|..+++.
T Consensus 18 C~dHYLCl~CLt~ml~~s~~C~iC~~~LPt 47 (50)
T PF03854_consen 18 CSDHYLCLNCLTLMLSRSDRCPICGKPLPT 47 (50)
T ss_dssp -SS-EEEHHHHHHT-SSSSEETTTTEE---
T ss_pred ecchhHHHHHHHHHhccccCCCcccCcCcc
Confidence 6 5999999999999999999999988764
No 97
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=95.04 E-value=0.0074 Score=48.08 Aligned_cols=47 Identities=26% Similarity=0.624 Sum_probs=38.4
Q ss_pred cccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCcccccccc
Q 036506 8 YYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEV 57 (86)
Q Consensus 8 ~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~ 57 (86)
....|.||++.+.+-..+ . .|||.++..|+..|+..+..||+|+...
T Consensus 1152 ~~~~c~ic~dil~~~~~I--~-~cgh~~c~~c~~~~l~~~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQGGI--A-GCGHEPCCRCDELWLYASSRCPICKSIK 1198 (1394)
T ss_pred cccchHHHHHHHHhcCCe--e-eechhHhhhHHHHHHHHhccCcchhhhh
Confidence 344799999998854433 3 3999999999999999999999998543
No 98
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.91 E-value=0.0014 Score=46.35 Aligned_cols=51 Identities=20% Similarity=0.570 Sum_probs=41.1
Q ss_pred ccccccccccccCC-CceeEcCCCCCcchHHhHHHHHhcCCCccccccccchh
Q 036506 9 YCYCTVCLDGISDG-QKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVAIV 60 (86)
Q Consensus 9 ~~~C~ICl~~~~~~-~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 60 (86)
...++||...+... +.+..+. |||.+|.++|.+||.....||.|+..+...
T Consensus 196 v~sl~I~~~slK~~y~k~~~~~-~g~~~~~~kL~k~L~~~~kl~~~~rel~~~ 247 (465)
T KOG0827|consen 196 VGSLSICFESLKQNYDKISAIV-CGHIYHHGKLSKWLATKRKLPSCRRELPKN 247 (465)
T ss_pred HhhhHhhHHHHHHHHHHHHHHh-hcccchhhHHHHHHHHHHHhHHHHhhhhhh
Confidence 35688988887654 4455554 999999999999999988999999987654
No 99
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.66 E-value=0.031 Score=39.63 Aligned_cols=46 Identities=26% Similarity=0.516 Sum_probs=35.6
Q ss_pred cccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCC---Cccccccc
Q 036506 10 CYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRS---TCPLCRIE 56 (86)
Q Consensus 10 ~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~---~CP~Cr~~ 56 (86)
..|||=.+.-.+......+. |||+..++-+.+..+++. .||+|-..
T Consensus 335 F~CPVlKeqtsdeNPPm~L~-CGHVISkdAlnrLS~ng~~sfKCPYCP~e 383 (394)
T KOG2817|consen 335 FICPVLKEQTSDENPPMMLI-CGHVISKDALNRLSKNGSQSFKCPYCPVE 383 (394)
T ss_pred eecccchhhccCCCCCeeee-ccceecHHHHHHHhhCCCeeeeCCCCCcc
Confidence 46888777655555566776 999999999999887644 69999554
No 100
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.45 E-value=0.026 Score=38.86 Aligned_cols=29 Identities=28% Similarity=0.780 Sum_probs=23.4
Q ss_pred CCCcchHHhHHHHHh-------------cCCCccccccccch
Q 036506 31 CKHCFHVECIDAWFQ-------------SRSTCPLCRIEVAI 59 (86)
Q Consensus 31 C~H~fh~~Ci~~wl~-------------~~~~CP~Cr~~~~~ 59 (86)
|....|.+|+.+|+. ++.+||+||+.+..
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci 366 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCI 366 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEE
Confidence 678899999999974 24489999998754
No 101
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.45 E-value=0.023 Score=43.91 Aligned_cols=36 Identities=28% Similarity=0.585 Sum_probs=27.8
Q ss_pred CcccccccccccccCCCceeEcCCCCCcchHHhHHHHH
Q 036506 7 PYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWF 44 (86)
Q Consensus 7 ~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl 44 (86)
..+..|.+|...+... ...+-+ |||.||.+|+.+-.
T Consensus 815 ep~d~C~~C~~~ll~~-pF~vf~-CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLIK-PFYVFP-CGHCFHRDCLIRHV 850 (911)
T ss_pred cCccchHHhcchhhcC-cceeee-ccchHHHHHHHHHH
Confidence 4567899999987664 334555 99999999998754
No 102
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=94.29 E-value=0.032 Score=40.46 Aligned_cols=36 Identities=22% Similarity=0.361 Sum_probs=31.2
Q ss_pred CcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhc
Q 036506 7 PYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQS 46 (86)
Q Consensus 7 ~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~ 46 (86)
++++.|+||..-|.++ .+++ |+|..|..|...-+.+
T Consensus 2 eeelkc~vc~~f~~ep---iil~-c~h~lc~~ca~~~~~~ 37 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREP---IILP-CSHNLCQACARNILVQ 37 (699)
T ss_pred cccccCceehhhccCc---eEee-cccHHHHHHHHhhccc
Confidence 4788999999999988 5787 9999999999876654
No 103
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=93.92 E-value=0.026 Score=37.92 Aligned_cols=51 Identities=27% Similarity=0.520 Sum_probs=37.1
Q ss_pred ccccccccccc-ccCCC-ceeEcCCCCCcchHHhHHHHHhc-CCCcc--ccccccc
Q 036506 8 YYCYCTVCLDG-ISDGQ-KFRRLPECKHCFHVECIDAWFQS-RSTCP--LCRIEVA 58 (86)
Q Consensus 8 ~~~~C~ICl~~-~~~~~-~~~~~~~C~H~fh~~Ci~~wl~~-~~~CP--~Cr~~~~ 58 (86)
.+..||||..+ +-+|+ .+.+-|.|-|.+|.+|+.+-+.. ...|| -|...+.
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILR 64 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILR 64 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHH
Confidence 45689999985 44444 44555579999999999998876 45799 5765443
No 104
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=93.74 E-value=0.029 Score=38.91 Aligned_cols=30 Identities=47% Similarity=1.033 Sum_probs=22.9
Q ss_pred eEcCCCCCcchHHhHHHHHhcCCCccccccccc
Q 036506 26 RRLPECKHCFHVECIDAWFQSRSTCPLCRIEVA 58 (86)
Q Consensus 26 ~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 58 (86)
+.++ |+|+||.+|... ..-+.||.|-..+.
T Consensus 105 RmIP-CkHvFCl~CAr~--~~dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 105 RMIP-CKHVFCLECARS--DSDKICPLCDDRVQ 134 (389)
T ss_pred cccc-cchhhhhhhhhc--CccccCcCcccHHH
Confidence 5777 999999999754 34568999966553
No 105
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.31 E-value=0.04 Score=39.10 Aligned_cols=38 Identities=21% Similarity=0.484 Sum_probs=27.3
Q ss_pred ccccccccccc-ccCCCceeEcCCCCCcchHHhHHHHHhc
Q 036506 8 YYCYCTVCLDG-ISDGQKFRRLPECKHCFHVECIDAWFQS 46 (86)
Q Consensus 8 ~~~~C~ICl~~-~~~~~~~~~~~~C~H~fh~~Ci~~wl~~ 46 (86)
...+|.||+.. ....+...+. .|+|.||.+|+.+.+..
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~-~C~H~fC~~C~k~~iev 183 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVL-KCGHRFCKDCVKQHIEV 183 (384)
T ss_pred ccccCccCccccccHhhhHHHh-cccchhhhHHhHHHhhh
Confidence 46789999944 3333333434 59999999999988763
No 106
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=93.11 E-value=0.065 Score=41.21 Aligned_cols=39 Identities=26% Similarity=0.692 Sum_probs=28.0
Q ss_pred cccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCccc
Q 036506 12 CTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPL 52 (86)
Q Consensus 12 C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~ 52 (86)
|.||--.+... ..... .|+|..|.+|...|++..-.||.
T Consensus 1031 C~~C~l~V~gs-s~~Cg-~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1031 CAICHLAVRGS-SNFCG-TCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred eeeEeeEeecc-chhhc-cccccccHHHHHHHHhcCCcCCC
Confidence 55554443322 22334 49999999999999999989985
No 107
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.62 E-value=0.06 Score=36.39 Aligned_cols=53 Identities=26% Similarity=0.679 Sum_probs=36.4
Q ss_pred CcccccccccccccCCCce-eEcCCC-----CCcchHHhHHHHHhcCC--------Cccccccccchh
Q 036506 7 PYYCYCTVCLDGISDGQKF-RRLPEC-----KHCFHVECIDAWFQSRS--------TCPLCRIEVAIV 60 (86)
Q Consensus 7 ~~~~~C~ICl~~~~~~~~~-~~~~~C-----~H~fh~~Ci~~wl~~~~--------~CP~Cr~~~~~~ 60 (86)
..+-.|-||+..=++...- .+-| | .|-.|.+|+.+|+..+. +||.|++++...
T Consensus 18 e~eR~CWiCF~TdeDn~~a~WV~P-CrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv 84 (293)
T KOG3053|consen 18 ELERCCWICFATDEDNRLAAWVHP-CRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIV 84 (293)
T ss_pred ccceeEEEEeccCcccchhhhccc-ccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchheee
Confidence 4567799999874433211 2334 4 47899999999996421 699999986543
No 108
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=91.74 E-value=0.33 Score=27.05 Aligned_cols=56 Identities=20% Similarity=0.368 Sum_probs=22.4
Q ss_pred CcccccccccccccC---CCceeEcCCCCCcchHHhHHHHHh-cCCCccccccccchhhh
Q 036506 7 PYYCYCTVCLDGISD---GQKFRRLPECKHCFHVECIDAWFQ-SRSTCPLCRIEVAIVIA 62 (86)
Q Consensus 7 ~~~~~C~ICl~~~~~---~~~~~~~~~C~H~fh~~Ci~~wl~-~~~~CP~Cr~~~~~~~~ 62 (86)
-....|.||-+.+-. ++..+....|+-..|+.|.+-=.+ .++.||.|++.+....+
T Consensus 7 ~~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr~kg 66 (80)
T PF14569_consen 7 LNGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKRHKG 66 (80)
T ss_dssp -SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B----TT
T ss_pred cCCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcccccC
Confidence 345679999998642 333344445888899999876444 36789999988765443
No 109
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=91.67 E-value=0.14 Score=39.74 Aligned_cols=56 Identities=13% Similarity=0.105 Sum_probs=39.1
Q ss_pred CCCCCcccccccccccccCCC---ceeEcCCCCCcchHHhHHHHHhc------CCCccccccccc
Q 036506 3 AAKCPYYCYCTVCLDGISDGQ---KFRRLPECKHCFHVECIDAWFQS------RSTCPLCRIEVA 58 (86)
Q Consensus 3 ~~~~~~~~~C~ICl~~~~~~~---~~~~~~~C~H~fh~~Ci~~wl~~------~~~CP~Cr~~~~ 58 (86)
.++..+...|.+|.-++.+++ .+-.+..|+|.||..||..|+.+ +-.|+.|.+-|.
T Consensus 90 DeK~a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~ 154 (1134)
T KOG0825|consen 90 DEKTAESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVG 154 (1134)
T ss_pred CcccccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhh
Confidence 445577788899988887732 22222359999999999999875 225777766553
No 110
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=91.40 E-value=0.13 Score=34.76 Aligned_cols=51 Identities=25% Similarity=0.677 Sum_probs=34.6
Q ss_pred cccccccccccCCCc-eeEcC-CCC---CcchHHhHHHHHh--cCCCccccccccchh
Q 036506 10 CYCTVCLDGISDGQK-FRRLP-ECK---HCFHVECIDAWFQ--SRSTCPLCRIEVAIV 60 (86)
Q Consensus 10 ~~C~ICl~~~~~~~~-~~~~~-~C~---H~fh~~Ci~~wl~--~~~~CP~Cr~~~~~~ 60 (86)
..|-||.+....... ....| .|. ...|+.|+..|+. .+..|.+|...+...
T Consensus 79 ~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~ 136 (323)
T KOG1609|consen 79 PICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINV 136 (323)
T ss_pred CcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccceec
Confidence 789999997543321 12333 132 5679999999998 456799998865443
No 111
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=91.20 E-value=0.06 Score=40.73 Aligned_cols=48 Identities=27% Similarity=0.732 Sum_probs=37.3
Q ss_pred cccccccccccccCCCceeEcCCCCCcchHHhHHHHHhc---CCCccccccccch
Q 036506 8 YYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQS---RSTCPLCRIEVAI 59 (86)
Q Consensus 8 ~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~---~~~CP~Cr~~~~~ 59 (86)
..++|+||+..+..+ ..+ .|.|.|+..|+..-+.. ...||+|+..+..
T Consensus 20 k~lEc~ic~~~~~~p---~~~-kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK 70 (684)
T KOG4362|consen 20 KILECPICLEHVKEP---SLL-KCDHIFLKFCLNKLFESKKGPKQCALCKSDIEK 70 (684)
T ss_pred hhccCCceeEEeecc---chh-hhhHHHHhhhhhceeeccCccccchhhhhhhhh
Confidence 467999999998887 244 59999999999886654 3469999865543
No 112
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=90.64 E-value=0.35 Score=24.50 Aligned_cols=42 Identities=24% Similarity=0.600 Sum_probs=19.8
Q ss_pred cccccccccccCCCceeEcCCCCCcchHHhHHHHHhc---C--CCcccccc
Q 036506 10 CYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQS---R--STCPLCRI 55 (86)
Q Consensus 10 ~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~---~--~~CP~Cr~ 55 (86)
+.|||-...+..+ ++.. .|.|.-|.+ +..|+.. . -.||+|.+
T Consensus 3 L~CPls~~~i~~P--~Rg~-~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~ 49 (50)
T PF02891_consen 3 LRCPLSFQRIRIP--VRGK-NCKHLQCFD-LESFLESNQRTPKWKCPICNK 49 (50)
T ss_dssp SB-TTTSSB-SSE--EEET-T--SS--EE-HHHHHHHHHHS---B-TTT--
T ss_pred eeCCCCCCEEEeC--ccCC-cCcccceEC-HHHHHHHhhccCCeECcCCcC
Confidence 5789988887765 3444 499985432 3445542 2 26999975
No 113
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.46 E-value=0.083 Score=39.95 Aligned_cols=45 Identities=20% Similarity=0.494 Sum_probs=32.2
Q ss_pred CCCcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCcc
Q 036506 5 KCPYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCP 51 (86)
Q Consensus 5 ~~~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP 51 (86)
++.+-+.|+||+..|-......+...|||..|+.|+....+ .+||
T Consensus 7 ~w~~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn--~scp 51 (861)
T KOG3161|consen 7 KWVLLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN--ASCP 51 (861)
T ss_pred hhHHHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhh--ccCC
Confidence 44556789999998866543334445999999999987554 4566
No 114
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.64 E-value=0.27 Score=35.46 Aligned_cols=37 Identities=19% Similarity=0.500 Sum_probs=29.3
Q ss_pred CcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhc
Q 036506 7 PYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQS 46 (86)
Q Consensus 7 ~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~ 46 (86)
....+|.||.+.+.. .+..+. |+|.|+..|...++.+
T Consensus 68 ~~~~~c~ic~~~~~~--~~~~~~-c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 68 KGDVQCGICVESYDG--EIIGLG-CGHPFCPPCWTGYLGT 104 (444)
T ss_pred CccccCCcccCCCcc--hhhhcC-CCcHHHHHHHHHHhhh
Confidence 456899999998765 334554 9999999999998864
No 115
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=89.13 E-value=0.22 Score=21.94 Aligned_cols=23 Identities=22% Similarity=0.524 Sum_probs=11.7
Q ss_pred ccccccccccCCCceeEcCCCCCcc
Q 036506 11 YCTVCLDGISDGQKFRRLPECKHCF 35 (86)
Q Consensus 11 ~C~ICl~~~~~~~~~~~~~~C~H~f 35 (86)
.||-|...+... ....|.|||.|
T Consensus 2 ~CP~C~~~V~~~--~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPES--AKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhh--cCcCCCCCCCC
Confidence 366666654322 23444566665
No 116
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=88.68 E-value=0.64 Score=27.23 Aligned_cols=51 Identities=20% Similarity=0.313 Sum_probs=32.7
Q ss_pred CCCcccccccccccccCCCceeE-----cCCC---CCcchHHhHHHHHhc---------CCCccccccc
Q 036506 5 KCPYYCYCTVCLDGISDGQKFRR-----LPEC---KHCFHVECIDAWFQS---------RSTCPLCRIE 56 (86)
Q Consensus 5 ~~~~~~~C~ICl~~~~~~~~~~~-----~~~C---~H~fh~~Ci~~wl~~---------~~~CP~Cr~~ 56 (86)
|+.....|..|...-.+.. +.- .+.| .-.||..||..++.. .-.||.||..
T Consensus 3 d~~~g~~CHqCrqKt~~~~-~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crgi 70 (105)
T PF10497_consen 3 DSVNGKTCHQCRQKTLDFK-TICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGI 70 (105)
T ss_pred cCCCCCCchhhcCCCCCCc-eEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCCe
Confidence 5667778888888532211 111 1236 678999999888753 2269998864
No 117
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=88.64 E-value=0.28 Score=32.33 Aligned_cols=45 Identities=29% Similarity=0.626 Sum_probs=34.2
Q ss_pred cccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCcccccccc
Q 036506 10 CYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEV 57 (86)
Q Consensus 10 ~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~ 57 (86)
-.|.+|...+-.+ +....|+=.+|..|+..++++...||.|.--+
T Consensus 182 k~Cn~Ch~LvIqg---~rCg~c~i~~h~~c~qty~q~~~~cphc~d~w 226 (235)
T KOG4718|consen 182 KNCNLCHCLVIQG---IRCGSCNIQYHRGCIQTYLQRRDICPHCGDLW 226 (235)
T ss_pred HHHhHhHHHhhee---eccCcccchhhhHHHHHHhcccCcCCchhccc
Confidence 4688888875544 23334888899999999999988999995444
No 118
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=87.62 E-value=0.37 Score=26.02 Aligned_cols=13 Identities=23% Similarity=0.974 Sum_probs=9.3
Q ss_pred cchHHhHHHHHhc
Q 036506 34 CFHVECIDAWFQS 46 (86)
Q Consensus 34 ~fh~~Ci~~wl~~ 46 (86)
-||+.|+.+|+..
T Consensus 11 gFCRNCLskWy~~ 23 (68)
T PF06844_consen 11 GFCRNCLSKWYRE 23 (68)
T ss_dssp S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3999999999863
No 119
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=87.31 E-value=0.59 Score=23.95 Aligned_cols=43 Identities=30% Similarity=0.693 Sum_probs=20.9
Q ss_pred cccccccccCC------CceeEcCCCCCcchHHhHHHHHhcCCCccccc
Q 036506 12 CTVCLDGISDG------QKFRRLPECKHCFHVECIDAWFQSRSTCPLCR 54 (86)
Q Consensus 12 C~ICl~~~~~~------~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr 54 (86)
|--|+..|..+ ......+.|++.||.+|=.=-=+.-..||-|.
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcChhhhccccCCcCCC
Confidence 45566666654 23456678999999999432112345688773
No 120
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=86.97 E-value=0.38 Score=23.89 Aligned_cols=43 Identities=30% Similarity=0.709 Sum_probs=28.0
Q ss_pred ccccccccccCCCceeEcCCCCCcchHHhHHHHHhc------CCCccccc
Q 036506 11 YCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQS------RSTCPLCR 54 (86)
Q Consensus 11 ~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~------~~~CP~Cr 54 (86)
.|.||...... ..++.-..|+..||..|+..-... .-.||.|+
T Consensus 1 ~C~vC~~~~~~-~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDDD-GDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCTT-SSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCCC-CCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 37899984333 344445569999999998664331 23577775
No 121
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.93 E-value=0.31 Score=31.85 Aligned_cols=38 Identities=32% Similarity=0.822 Sum_probs=26.6
Q ss_pred cccccccccCCCceeEcCCCCC-cchHHhHHHHHhcCCCcccccccc
Q 036506 12 CTVCLDGISDGQKFRRLPECKH-CFHVECIDAWFQSRSTCPLCRIEV 57 (86)
Q Consensus 12 C~ICl~~~~~~~~~~~~~~C~H-~fh~~Ci~~wl~~~~~CP~Cr~~~ 57 (86)
|-+|.+. +..+..+| |.| .+|..|-.. -..||+|+...
T Consensus 161 Cr~C~~~---~~~VlllP-CrHl~lC~~C~~~----~~~CPiC~~~~ 199 (207)
T KOG1100|consen 161 CRKCGER---EATVLLLP-CRHLCLCGICDES----LRICPICRSPK 199 (207)
T ss_pred ceecCcC---CceEEeec-ccceEeccccccc----CccCCCCcChh
Confidence 5555544 45577888 997 778888543 45699998754
No 122
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.88 E-value=0.35 Score=34.38 Aligned_cols=44 Identities=23% Similarity=0.471 Sum_probs=32.2
Q ss_pred ccccccccccccCCC--ceeEcCCCCCcchHHhHHHHHhcCCCcccc
Q 036506 9 YCYCTVCLDGISDGQ--KFRRLPECKHCFHVECIDAWFQSRSTCPLC 53 (86)
Q Consensus 9 ~~~C~ICl~~~~~~~--~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~C 53 (86)
-..|++|.-.+.... ...+.. |||.||..|...|...+..|..|
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~Cr-C~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCR-CGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred cCcCcccceeeeecCCcceEEee-ccccchhhcCcchhhCCccccCc
Confidence 357888887654333 345665 99999999999998877766543
No 123
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=86.55 E-value=0.88 Score=35.65 Aligned_cols=51 Identities=22% Similarity=0.588 Sum_probs=36.5
Q ss_pred CcccccccccccccCCCceeEcC-CCC---CcchHHhHHHHHhc--CCCccccccccc
Q 036506 7 PYYCYCTVCLDGISDGQKFRRLP-ECK---HCFHVECIDAWFQS--RSTCPLCRIEVA 58 (86)
Q Consensus 7 ~~~~~C~ICl~~~~~~~~~~~~~-~C~---H~fh~~Ci~~wl~~--~~~CP~Cr~~~~ 58 (86)
.+...|-||..+-..++.. --| +|. ...|.+|+.+|+.- ...|-+|..++.
T Consensus 10 ~d~~~CRICr~e~~~d~pL-fhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~ 66 (1175)
T COG5183 10 EDKRSCRICRTEDIRDDPL-FHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYK 66 (1175)
T ss_pred ccchhceeecCCCCCCCcC-cccccccchhHHHHHHHHHHHHhcCCCcceeeecceee
Confidence 5668999999885554443 223 232 46899999999985 346999988764
No 125
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=86.16 E-value=0.9 Score=35.10 Aligned_cols=42 Identities=29% Similarity=0.402 Sum_probs=30.7
Q ss_pred ccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCccc
Q 036506 9 YCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPL 52 (86)
Q Consensus 9 ~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~ 52 (86)
...|.+|-..+.. . ....+.|||.-|.+++.+|+..+.-||.
T Consensus 779 ~~~CtVC~~vi~G-~-~~~c~~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 779 SAKCTVCDLVIRG-V-DVWCQVCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred hcCceeecceeee-e-EeecccccccccHHHHHHHHhcCCCCcc
Confidence 3467777776542 1 2344469999999999999998877765
No 126
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=85.69 E-value=0.44 Score=25.28 Aligned_cols=39 Identities=13% Similarity=0.198 Sum_probs=19.8
Q ss_pred CCCcccccccccccccCCCceeEcCCCCCcchHHhHHHH
Q 036506 5 KCPYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAW 43 (86)
Q Consensus 5 ~~~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~w 43 (86)
+..+...|.+|...|..-..--....||++||..|....
T Consensus 5 ~d~~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~ 43 (69)
T PF01363_consen 5 PDSEASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQR 43 (69)
T ss_dssp SGGG-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EE
T ss_pred CCCCCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCE
Confidence 345567899999999654333344469999999887543
No 127
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=84.85 E-value=0.74 Score=21.78 Aligned_cols=26 Identities=27% Similarity=0.553 Sum_probs=15.3
Q ss_pred cccccccccccCCCc-------eeEcCCCCCcc
Q 036506 10 CYCTVCLDGISDGQK-------FRRLPECKHCF 35 (86)
Q Consensus 10 ~~C~ICl~~~~~~~~-------~~~~~~C~H~f 35 (86)
..||-|...|..++. .+..+.|+|.|
T Consensus 3 i~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f 35 (37)
T PF13719_consen 3 ITCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVF 35 (37)
T ss_pred EECCCCCceEEcCHHHcccCCcEEECCCCCcEe
Confidence 467777777765442 23444566665
No 128
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=84.42 E-value=1.4 Score=35.32 Aligned_cols=54 Identities=20% Similarity=0.415 Sum_probs=37.7
Q ss_pred ccccccccccccc---CCCceeEcCCCCCcchHHhHHHHH-hcCCCccccccccchhh
Q 036506 8 YYCYCTVCLDGIS---DGQKFRRLPECKHCFHVECIDAWF-QSRSTCPLCRIEVAIVI 61 (86)
Q Consensus 8 ~~~~C~ICl~~~~---~~~~~~~~~~C~H~fh~~Ci~~wl-~~~~~CP~Cr~~~~~~~ 61 (86)
....|.||-+++. +++..+....|+--.|+.|.+==. +.++.||.|++.+....
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYkr~k 73 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKRHK 73 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhc
Confidence 4458999999864 344445555688889999994312 23678999999876433
No 129
>PLN02189 cellulose synthase
Probab=83.98 E-value=1.5 Score=35.05 Aligned_cols=54 Identities=24% Similarity=0.447 Sum_probs=37.9
Q ss_pred ccccccccccccc---CCCceeEcCCCCCcchHHhHHHHHh-cCCCccccccccchhh
Q 036506 8 YYCYCTVCLDGIS---DGQKFRRLPECKHCFHVECIDAWFQ-SRSTCPLCRIEVAIVI 61 (86)
Q Consensus 8 ~~~~C~ICl~~~~---~~~~~~~~~~C~H~fh~~Ci~~wl~-~~~~CP~Cr~~~~~~~ 61 (86)
....|.||-+++. +++..+....|+-..|+.|.+-=.+ .++.||.|++.+....
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~r~k 90 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYKRLK 90 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhcc
Confidence 3458999999875 3344455556888899999944222 3678999999886433
No 130
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=82.99 E-value=0.42 Score=26.10 Aligned_cols=43 Identities=16% Similarity=0.436 Sum_probs=21.9
Q ss_pred ccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCccccccccchh
Q 036506 9 YCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVAIV 60 (86)
Q Consensus 9 ~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 60 (86)
+..||.|..++.... ++.+|..|-.. +.....||.|..++..-
T Consensus 1 e~~CP~C~~~L~~~~--------~~~~C~~C~~~-~~~~a~CPdC~~~Le~L 43 (70)
T PF07191_consen 1 ENTCPKCQQELEWQG--------GHYHCEACQKD-YKKEAFCPDCGQPLEVL 43 (70)
T ss_dssp --B-SSS-SBEEEET--------TEEEETTT--E-EEEEEE-TTT-SB-EEE
T ss_pred CCcCCCCCCccEEeC--------CEEECcccccc-ceecccCCCcccHHHHH
Confidence 367999999876442 45555555443 24466799998887543
No 131
>PLN02436 cellulose synthase A
Probab=82.99 E-value=1.7 Score=34.87 Aligned_cols=54 Identities=24% Similarity=0.477 Sum_probs=38.2
Q ss_pred ccccccccccccc---CCCceeEcCCCCCcchHHhHHHHHh-cCCCccccccccchhh
Q 036506 8 YYCYCTVCLDGIS---DGQKFRRLPECKHCFHVECIDAWFQ-SRSTCPLCRIEVAIVI 61 (86)
Q Consensus 8 ~~~~C~ICl~~~~---~~~~~~~~~~C~H~fh~~Ci~~wl~-~~~~CP~Cr~~~~~~~ 61 (86)
....|.||-+++. +++..+....|+-..|+.|.+-=.+ .++.||.|++.+....
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~r~k 92 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIK 92 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhcc
Confidence 3458999999863 3444455556888899999944222 3678999999876433
No 132
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=82.64 E-value=0.54 Score=35.22 Aligned_cols=27 Identities=33% Similarity=0.850 Sum_probs=19.2
Q ss_pred eEcCCCCCcchHHhHHHHHhcCCCcccccc
Q 036506 26 RRLPECKHCFHVECIDAWFQSRSTCPLCRI 55 (86)
Q Consensus 26 ~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~ 55 (86)
.....|+++||..|+.+ .+.-||.|-.
T Consensus 532 ~rC~~C~avfH~~C~~r---~s~~CPrC~R 558 (580)
T KOG1829|consen 532 RRCSTCLAVFHKKCLRR---KSPCCPRCER 558 (580)
T ss_pred eeHHHHHHHHHHHHHhc---cCCCCCchHH
Confidence 34445999999999654 3444999943
No 133
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PLN02400 cellulose synthase
Probab=80.73 E-value=1.4 Score=35.29 Aligned_cols=53 Identities=21% Similarity=0.423 Sum_probs=36.7
Q ss_pred ccccccccccccc---CCCceeEcCCCCCcchHHhHHHHH-hcCCCccccccccchh
Q 036506 8 YYCYCTVCLDGIS---DGQKFRRLPECKHCFHVECIDAWF-QSRSTCPLCRIEVAIV 60 (86)
Q Consensus 8 ~~~~C~ICl~~~~---~~~~~~~~~~C~H~fh~~Ci~~wl-~~~~~CP~Cr~~~~~~ 60 (86)
....|.||-+++. +++..+....|+--.|+.|.+==. ..++.||.|++.+...
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYkR~ 91 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYRRH 91 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccccc
Confidence 3458999999864 334445555688889999984311 2367899999987633
No 135
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=80.49 E-value=2.4 Score=25.21 Aligned_cols=46 Identities=24% Similarity=0.426 Sum_probs=32.5
Q ss_pred ccccccccccccCC----------CceeEcCCCCCcchHHhHHHHHhcCCCccccc
Q 036506 9 YCYCTVCLDGISDG----------QKFRRLPECKHCFHVECIDAWFQSRSTCPLCR 54 (86)
Q Consensus 9 ~~~C~ICl~~~~~~----------~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr 54 (86)
...|--|+..|..+ ......+.|++.||.+|-.=+-+.-..||-|.
T Consensus 55 ~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 55 SRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CCcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 34699999887643 11234567999999999766666666799885
No 136
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=79.63 E-value=1.4 Score=28.52 Aligned_cols=41 Identities=29% Similarity=0.750 Sum_probs=28.3
Q ss_pred cccccccccc-----ccCCCceeEcCCCCCcchHHhHHHHHhcCCCcccccc
Q 036506 9 YCYCTVCLDG-----ISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRI 55 (86)
Q Consensus 9 ~~~C~ICl~~-----~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~ 55 (86)
+..|-||-+. |+. +.+...+.|+-.||..|.. ...||-|..
T Consensus 152 GfiCe~C~~~~~IfPF~~-~~~~~C~~C~~v~H~~C~~-----~~~CpkC~R 197 (202)
T PF13901_consen 152 GFICEICNSDDIIFPFQI-DTTVRCPKCKSVFHKSCFR-----KKSCPKCAR 197 (202)
T ss_pred CCCCccCCCCCCCCCCCC-CCeeeCCcCccccchhhcC-----CCCCCCcHh
Confidence 4567777653 333 2445666799999999975 267999943
No 137
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=79.54 E-value=1.1 Score=21.11 Aligned_cols=26 Identities=23% Similarity=0.459 Sum_probs=15.5
Q ss_pred cccccccccccCCCc-------eeEcCCCCCcc
Q 036506 10 CYCTVCLDGISDGQK-------FRRLPECKHCF 35 (86)
Q Consensus 10 ~~C~ICl~~~~~~~~-------~~~~~~C~H~f 35 (86)
.+|+-|...|..++. .+..+.|+|.|
T Consensus 3 i~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f 35 (36)
T PF13717_consen 3 ITCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVF 35 (36)
T ss_pred EECCCCCCEEeCCHHHCCCCCcEEECCCCCCEe
Confidence 467778877765443 13344567766
No 138
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=78.82 E-value=1.8 Score=19.59 Aligned_cols=36 Identities=25% Similarity=0.578 Sum_probs=22.3
Q ss_pred cccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCcccccccc
Q 036506 12 CTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEV 57 (86)
Q Consensus 12 C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~ 57 (86)
|..|...+...+.. +.. =+..||..|+ .|..|+..+
T Consensus 2 C~~C~~~i~~~~~~-~~~-~~~~~H~~Cf--------~C~~C~~~L 37 (39)
T smart00132 2 CAGCGKPIRGGELV-LRA-LGKVWHPECF--------KCSKCGKPL 37 (39)
T ss_pred ccccCCcccCCcEE-EEe-CCccccccCC--------CCcccCCcC
Confidence 67787877664222 222 4678888775 567776654
No 139
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=78.38 E-value=2.1 Score=29.93 Aligned_cols=49 Identities=16% Similarity=0.360 Sum_probs=35.8
Q ss_pred ccccccccccccCCCce-eEcCCCCCcchHHhHHHHHhcCCCccccccccc
Q 036506 9 YCYCTVCLDGISDGQKF-RRLPECKHCFHVECIDAWFQSRSTCPLCRIEVA 58 (86)
Q Consensus 9 ~~~C~ICl~~~~~~~~~-~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 58 (86)
...|+||.+.....+.. .-. .|++..|..|+..-...+..||.||....
T Consensus 249 ~~s~p~~~~~~~~~d~~~lP~-~~~~~~~l~~~~t~~~~~~~~~~~rk~~~ 298 (327)
T KOG2068|consen 249 PPSCPICYEDLDLTDSNFLPC-PCGFRLCLFCHKTISDGDGRCPGCRKPYE 298 (327)
T ss_pred CCCCCCCCCcccccccccccc-cccccchhhhhhcccccCCCCCccCCccc
Confidence 36899999987443322 223 38888888888887778889999997654
No 140
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=77.64 E-value=1.9 Score=21.79 Aligned_cols=35 Identities=14% Similarity=0.335 Sum_probs=23.4
Q ss_pred cccccccccccCCCceeEcCCCCCcchHHhHHHHH
Q 036506 10 CYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWF 44 (86)
Q Consensus 10 ~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl 44 (86)
..|.+|-..|..-..-.....||++|+..|.....
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~ 37 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRI 37 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCee
Confidence 46888887776533222333599999999976543
No 141
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.51 E-value=1.9 Score=29.26 Aligned_cols=33 Identities=21% Similarity=0.281 Sum_probs=26.6
Q ss_pred ccccccccccccCCCceeEcCCCCCcchHHhHHHHHh
Q 036506 9 YCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQ 45 (86)
Q Consensus 9 ~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~ 45 (86)
=.-|.+||.++.+| ++.+ =||+|.+.||.+++.
T Consensus 43 FdcCsLtLqPc~dP---vit~-~GylfdrEaILe~il 75 (303)
T KOG3039|consen 43 FDCCSLTLQPCRDP---VITP-DGYLFDREAILEYIL 75 (303)
T ss_pred cceeeeecccccCC---ccCC-CCeeeeHHHHHHHHH
Confidence 34588999999988 4554 799999999999863
No 142
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=77.13 E-value=0.94 Score=23.07 Aligned_cols=15 Identities=27% Similarity=0.550 Sum_probs=8.0
Q ss_pred CCccccccccchhhh
Q 036506 48 STCPLCRIEVAIVIA 62 (86)
Q Consensus 48 ~~CP~Cr~~~~~~~~ 62 (86)
..||+|.++|.....
T Consensus 21 ~~CPlC~r~l~~e~~ 35 (54)
T PF04423_consen 21 GCCPLCGRPLDEEHR 35 (54)
T ss_dssp EE-TTT--EE-HHHH
T ss_pred CcCCCCCCCCCHHHH
Confidence 389999999876543
No 143
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=76.62 E-value=3.1 Score=21.75 Aligned_cols=45 Identities=20% Similarity=0.564 Sum_probs=29.0
Q ss_pred ccccccccccCCCceeEcCCCC--CcchHHhHHHHHhcCCCccccccccch
Q 036506 11 YCTVCLDGISDGQKFRRLPECK--HCFHVECIDAWFQSRSTCPLCRIEVAI 59 (86)
Q Consensus 11 ~C~ICl~~~~~~~~~~~~~~C~--H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 59 (86)
.|-.|-.++.....-... |. -.||.+|....| +..||-|...+..
T Consensus 7 nCE~C~~dLp~~s~~A~I--CSfECTFC~~C~e~~l--~~~CPNCgGelv~ 53 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYI--CSFECTFCADCAETML--NGVCPNCGGELVR 53 (57)
T ss_pred CccccCCCCCCCCCcceE--EeEeCcccHHHHHHHh--cCcCcCCCCcccc
Confidence 355555665443311122 54 489999999866 6789999887753
No 144
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.13 E-value=1.1 Score=34.74 Aligned_cols=40 Identities=18% Similarity=0.355 Sum_probs=28.1
Q ss_pred cccccccccccccCC----CceeEcCCCCCcchHHhHHHHHhcCC
Q 036506 8 YYCYCTVCLDGISDG----QKFRRLPECKHCFHVECIDAWFQSRS 48 (86)
Q Consensus 8 ~~~~C~ICl~~~~~~----~~~~~~~~C~H~fh~~Ci~~wl~~~~ 48 (86)
.+..|..|.+..... +.+.+.. |||+||..|+..-..+++
T Consensus 783 ~e~rc~~c~~~~l~~~~~~~~~~v~~-c~h~yhk~c~~~~~~~~~ 826 (846)
T KOG2066|consen 783 VEERCSSCFEPNLPSGAAFDSVVVFH-CGHMYHKECLMMESLRNA 826 (846)
T ss_pred ehhhhhhhcccccccCcccceeeEEE-ccchhhhcccccHHHhcc
Confidence 345788898876532 3455665 999999999977655443
No 145
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.72 E-value=1.5 Score=30.28 Aligned_cols=40 Identities=18% Similarity=0.290 Sum_probs=29.2
Q ss_pred CcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhc
Q 036506 7 PYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQS 46 (86)
Q Consensus 7 ~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~ 46 (86)
...+.|.+|.+.+++..-|..-..=.|.||..|-.+.+++
T Consensus 266 ~apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~ 305 (352)
T KOG3579|consen 266 SAPLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQ 305 (352)
T ss_pred CCceeehhhhhhhccCceeecCCCcccceecccCHHHHHh
Confidence 3458999999999876443211123799999999998875
No 146
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=75.49 E-value=2.2 Score=29.99 Aligned_cols=45 Identities=24% Similarity=0.409 Sum_probs=29.5
Q ss_pred cccccccccccCCCceeEcCCCCCcchHHhHHHHHhcC---CCcccccc
Q 036506 10 CYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSR---STCPLCRI 55 (86)
Q Consensus 10 ~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~---~~CP~Cr~ 55 (86)
..||+=-+.-........+. |||+.-..-+.+..++. ..||+|-.
T Consensus 337 FiCPVlKe~~t~ENpP~ml~-CgHVIskeal~~LS~nG~~~FKCPYCP~ 384 (396)
T COG5109 337 FICPVLKELCTDENPPVMLE-CGHVISKEALSVLSQNGVLSFKCPYCPE 384 (396)
T ss_pred eeccccHhhhcccCCCeeee-ccceeeHHHHHHHhhcCcEEeeCCCCCc
Confidence 34666444433333345554 99999999998877653 36999944
No 147
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=75.21 E-value=1.7 Score=21.88 Aligned_cols=38 Identities=21% Similarity=0.468 Sum_probs=25.2
Q ss_pred cccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCccccccccch
Q 036506 12 CTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVAI 59 (86)
Q Consensus 12 C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 59 (86)
|.-|...+.....+... -+..||..|+ .|-.|+..+..
T Consensus 1 C~~C~~~I~~~~~~~~~--~~~~~H~~Cf--------~C~~C~~~l~~ 38 (58)
T PF00412_consen 1 CARCGKPIYGTEIVIKA--MGKFWHPECF--------KCSKCGKPLND 38 (58)
T ss_dssp BTTTSSBESSSSEEEEE--TTEEEETTTS--------BETTTTCBTTT
T ss_pred CCCCCCCccCcEEEEEe--CCcEEEcccc--------ccCCCCCccCC
Confidence 56677777755433222 6788888775 78888877654
No 148
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=74.86 E-value=2.3 Score=29.08 Aligned_cols=50 Identities=22% Similarity=0.522 Sum_probs=34.2
Q ss_pred ccccccccccccCCCceeE---cCCCCCcchHHhHHHHHhc---------CCCccccccccc
Q 036506 9 YCYCTVCLDGISDGQKFRR---LPECKHCFHVECIDAWFQS---------RSTCPLCRIEVA 58 (86)
Q Consensus 9 ~~~C~ICl~~~~~~~~~~~---~~~C~H~fh~~Ci~~wl~~---------~~~CP~Cr~~~~ 58 (86)
+.+|-+|.+.+...+..+. -+.|+-.+|..|+..-+.. ...||.|+..+.
T Consensus 182 ~~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~~ 243 (276)
T KOG3005|consen 182 NVECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFLS 243 (276)
T ss_pred chhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhceee
Confidence 4689999999854443321 1247888999999984432 347999988643
No 149
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.89 E-value=3.8 Score=27.94 Aligned_cols=52 Identities=17% Similarity=0.256 Sum_probs=35.6
Q ss_pred CcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCccccccccchh
Q 036506 7 PYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVAIV 60 (86)
Q Consensus 7 ~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 60 (86)
....-|||=--+|........+-.|||+|-..-+.+. ....|++|.+.+...
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y~~~ 160 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVCHVCGAAYQED 160 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHh--hhccccccCCccccc
Confidence 3455688877776654444444469999987766552 367899999887654
No 150
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.76 E-value=2.3 Score=24.46 Aligned_cols=13 Identities=23% Similarity=0.976 Sum_probs=11.4
Q ss_pred cchHHhHHHHHhc
Q 036506 34 CFHVECIDAWFQS 46 (86)
Q Consensus 34 ~fh~~Ci~~wl~~ 46 (86)
-||+.|+..|++.
T Consensus 42 gFCRNCLs~Wy~e 54 (104)
T COG3492 42 GFCRNCLSNWYRE 54 (104)
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999974
No 151
>PLN02195 cellulose synthase A
Probab=71.20 E-value=5.2 Score=31.95 Aligned_cols=50 Identities=20% Similarity=0.425 Sum_probs=35.5
Q ss_pred ccccccccccccC---CCceeEcCCCCCcchHHhHHHHHh-cCCCccccccccc
Q 036506 9 YCYCTVCLDGISD---GQKFRRLPECKHCFHVECIDAWFQ-SRSTCPLCRIEVA 58 (86)
Q Consensus 9 ~~~C~ICl~~~~~---~~~~~~~~~C~H~fh~~Ci~~wl~-~~~~CP~Cr~~~~ 58 (86)
...|.||-+.+.. ++..+....|+--.|+.|.+==.+ .++.||.|++.+.
T Consensus 6 ~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 6 APICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred CccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 3479999997643 344455556898999999843222 3678999999886
No 152
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=70.57 E-value=1.2 Score=22.89 Aligned_cols=34 Identities=26% Similarity=0.622 Sum_probs=20.9
Q ss_pred cccc--cccccccC----CCceeEcCCCCCcchHHhHHHH
Q 036506 10 CYCT--VCLDGISD----GQKFRRLPECKHCFHVECIDAW 43 (86)
Q Consensus 10 ~~C~--ICl~~~~~----~~~~~~~~~C~H~fh~~Ci~~w 43 (86)
.-|| -|...+.. ....+..+.|++.||..|...|
T Consensus 19 ~~CP~~~C~~~~~~~~~~~~~~v~C~~C~~~fC~~C~~~~ 58 (64)
T smart00647 19 KWCPAPDCSAAIIVTEEEGCNRVTCPKCGFSFCFRCKVPW 58 (64)
T ss_pred cCCCCCCCcceEEecCCCCCCeeECCCCCCeECCCCCCcC
Confidence 3466 55443332 2334555458999999888776
No 153
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=69.76 E-value=7.9 Score=31.21 Aligned_cols=54 Identities=22% Similarity=0.365 Sum_probs=38.1
Q ss_pred CCcccccccccccccC---CCceeEcCCCCCcchHHhHHHHHh-cCCCccccccccch
Q 036506 6 CPYYCYCTVCLDGISD---GQKFRRLPECKHCFHVECIDAWFQ-SRSTCPLCRIEVAI 59 (86)
Q Consensus 6 ~~~~~~C~ICl~~~~~---~~~~~~~~~C~H~fh~~Ci~~wl~-~~~~CP~Cr~~~~~ 59 (86)
+-....|.||-+++.. ++..+....|+--.|+.|.+-=.+ .++.||.|++.+..
T Consensus 12 ~~~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~~ 69 (1044)
T PLN02915 12 SADAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYKR 69 (1044)
T ss_pred CCCcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhh
Confidence 3456789999998643 344455556888899999943222 36789999998764
No 154
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.62 E-value=2.8 Score=23.12 Aligned_cols=27 Identities=22% Similarity=0.570 Sum_probs=21.1
Q ss_pred CCCcchHHhHHHHHhcCCCccccccccch
Q 036506 31 CKHCFHVECIDAWFQSRSTCPLCRIEVAI 59 (86)
Q Consensus 31 C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 59 (86)
=.+.||.+|... +-+..||.|...+..
T Consensus 27 fEcTFCadCae~--~l~g~CPnCGGelv~ 53 (84)
T COG3813 27 FECTFCADCAEN--RLHGLCPNCGGELVA 53 (84)
T ss_pred EeeehhHhHHHH--hhcCcCCCCCchhhc
Confidence 368899999886 336789999887654
No 155
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=67.25 E-value=5.8 Score=28.03 Aligned_cols=47 Identities=23% Similarity=0.519 Sum_probs=30.5
Q ss_pred cccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCcccccc
Q 036506 8 YYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRI 55 (86)
Q Consensus 8 ~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~ 55 (86)
....|-.|.+....... .....|.+.||.+|-.=-=++-..||-|.+
T Consensus 329 ~~~~Cf~C~~~~~~~~~-y~C~~Ck~~FCldCDv~iHesLh~CpgCeh 375 (378)
T KOG2807|consen 329 GSRFCFACQGELLSSGR-YRCESCKNVFCLDCDVFIHESLHNCPGCEH 375 (378)
T ss_pred CCcceeeeccccCCCCc-EEchhccceeeccchHHHHhhhhcCCCcCC
Confidence 34458888776655443 344459999999995433334457999864
No 156
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=66.12 E-value=4.9 Score=20.37 Aligned_cols=26 Identities=27% Similarity=0.713 Sum_probs=13.9
Q ss_pred EcCCCCCcchHHhHHHHHhcCCCcccc
Q 036506 27 RLPECKHCFHVECIDAWFQSRSTCPLC 53 (86)
Q Consensus 27 ~~~~C~H~fh~~Ci~~wl~~~~~CP~C 53 (86)
..+.|||.|-..=-.+- .....||.|
T Consensus 30 ~C~~Cgh~w~~~v~~R~-~~~~~CP~C 55 (55)
T PF14311_consen 30 KCPKCGHEWKASVNDRT-RRGKGCPYC 55 (55)
T ss_pred ECCCCCCeeEccHhhhc-cCCCCCCCC
Confidence 34457777654333222 345568776
No 157
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=65.85 E-value=7.4 Score=17.17 Aligned_cols=29 Identities=34% Similarity=0.660 Sum_probs=9.9
Q ss_pred ccccccccccCCCceeEcCCCCCcchHHhH
Q 036506 11 YCTVCLDGISDGQKFRRLPECKHCFHVECI 40 (86)
Q Consensus 11 ~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci 40 (86)
.|.+|...... ...-.-..|.-.+|..|+
T Consensus 2 ~C~~C~~~~~~-~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDG-GWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S---EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCC-CceEECccCCCccChhcC
Confidence 47778777655 334444468888888885
No 158
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=63.87 E-value=4 Score=27.70 Aligned_cols=42 Identities=14% Similarity=0.225 Sum_probs=31.1
Q ss_pred ccccccccccccCCCceeEcCCCCCcchHHhHHHHHhc--CCCcccc
Q 036506 9 YCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQS--RSTCPLC 53 (86)
Q Consensus 9 ~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~--~~~CP~C 53 (86)
...|||=...+.+| ++...|||+|=++=|...+.. ...||+=
T Consensus 176 s~rdPis~~~I~nP---viSkkC~HvydrDsI~~~l~~~~~i~CPv~ 219 (262)
T KOG2979|consen 176 SNRDPISKKPIVNP---VISKKCGHVYDRDSIMQILCDEITIRCPVL 219 (262)
T ss_pred cccCchhhhhhhch---hhhcCcCcchhhhhHHHHhccCceeecccc
Confidence 45677777777666 344469999999999999886 3468874
No 159
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=63.75 E-value=5.7 Score=22.84 Aligned_cols=33 Identities=21% Similarity=0.617 Sum_probs=22.0
Q ss_pred CcccccccccccccCCCceeEcC--CCCCcchHHhHHH
Q 036506 7 PYYCYCTVCLDGISDGQKFRRLP--ECKHCFHVECIDA 42 (86)
Q Consensus 7 ~~~~~C~ICl~~~~~~~~~~~~~--~C~H~fh~~Ci~~ 42 (86)
.....|.||... .+..+ ... .|...||..|...
T Consensus 53 ~~~~~C~iC~~~--~G~~i-~C~~~~C~~~fH~~CA~~ 87 (110)
T PF13832_consen 53 RFKLKCSICGKS--GGACI-KCSHPGCSTAFHPTCARK 87 (110)
T ss_pred hcCCcCcCCCCC--CceeE-EcCCCCCCcCCCHHHHHH
Confidence 347889999988 32222 111 3888999999765
No 160
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=63.20 E-value=3.9 Score=30.34 Aligned_cols=45 Identities=27% Similarity=0.768 Sum_probs=34.0
Q ss_pred CcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCccccccccch
Q 036506 7 PYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVAI 59 (86)
Q Consensus 7 ~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 59 (86)
.....|.||+... .. +..+ |. |..|+..|+..+..||+|+..+..
T Consensus 477 ~~~~~~~~~~~~~-~~---~~~~-~~---~~~~l~~~~~~~~~~pl~~~~~~~ 521 (543)
T KOG0802|consen 477 EPNDVCAICYQEM-SA---RITP-CS---HALCLRKWLYVQEVCPLCHTYMKE 521 (543)
T ss_pred cccCcchHHHHHH-Hh---cccc-cc---chhHHHhhhhhccccCCCchhhhc
Confidence 3456788888887 21 3444 66 889999999999999999886644
No 161
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=62.55 E-value=2.5 Score=30.43 Aligned_cols=27 Identities=41% Similarity=0.791 Sum_probs=0.0
Q ss_pred eEcCCCCCcchHHhHHHHHh------cCCCccccccc
Q 036506 26 RRLPECKHCFHVECIDAWFQ------SRSTCPLCRIE 56 (86)
Q Consensus 26 ~~~~~C~H~fh~~Ci~~wl~------~~~~CP~Cr~~ 56 (86)
+.+ .|||++... .|-. +.+.||+||..
T Consensus 305 VYl-~CGHVhG~h---~Wg~~~~~~~~~r~CPlCr~~ 337 (416)
T PF04710_consen 305 VYL-NCGHVHGYH---NWGQDSDRDPRSRTCPLCRQV 337 (416)
T ss_dssp -------------------------------------
T ss_pred eec-cccceeeec---ccccccccccccccCCCcccc
Confidence 345 499987654 4543 24579999975
No 162
>PF06750 DiS_P_DiS: Bacterial Peptidase A24 N-terminal domain; InterPro: IPR010627 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This domain is found at the N terminus of bacterial aspartic peptidases belonging to MEROPS peptidase family A24 (clan AD), subfamily A24A (type IV prepilin peptidase, IPR000045 from INTERPRO). It's function has not been specifically determined; however some of the family have been characterised as bifunctional [], and this domain may contain the N-methylation activity. The domain consists of an intracellular region between a pair of transmembrane domains. This intracellular region contains an invariant proline and four conserved cysteines. These Cys residues are arranged in a two-pair motif, with the Cys residues of a pair separated (usually) by 2 aa and with each pair separated by 21 largely hydrophilic residues (C-X-X-C...X21...C-X-X-C); they have been shown to be essential to the overall function of the enzyme [, ]. The bifunctional enzyme prepilin peptidase (PilD) from Pseudomonas aeruginosa is a key determinant in both type-IV pilus biogenesis and extracellular protein secretion, in its roles as a leader peptidase and methyl transferase (MTase). It is responsible for endopeptidic cleavage of the unique leader peptides that characterise type-IV pilin precursors, as well as proteins with homologous leader sequences that are essential components of the general secretion pathway found in a variety of Gram-negative pathogens. Following removal of the leader peptides, the same enzyme is responsible for the second posttranslational modification that characterises the type-IV pilins and their homologues, namely N-methylation of the newly exposed N-terminal amino acid residue [].
Probab=59.52 E-value=6.8 Score=22.28 Aligned_cols=21 Identities=19% Similarity=0.430 Sum_probs=16.6
Q ss_pred HHHHHhcCCCccccccccchh
Q 036506 40 IDAWFQSRSTCPLCRIEVAIV 60 (86)
Q Consensus 40 i~~wl~~~~~CP~Cr~~~~~~ 60 (86)
+..|+..+..|..|++++...
T Consensus 51 i~S~l~lrGrCr~C~~~I~~~ 71 (92)
T PF06750_consen 51 ILSYLLLRGRCRYCGAPIPPR 71 (92)
T ss_pred HHHHHHhCCCCcccCCCCChH
Confidence 455888899999999987653
No 163
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=57.79 E-value=1.7 Score=27.08 Aligned_cols=24 Identities=29% Similarity=0.856 Sum_probs=16.4
Q ss_pred chHHhHHHHHhcCC----Cccccccccc
Q 036506 35 FHVECIDAWFQSRS----TCPLCRIEVA 58 (86)
Q Consensus 35 fh~~Ci~~wl~~~~----~CP~Cr~~~~ 58 (86)
||..|+.+=|..-. .||.|...-.
T Consensus 2 ~H~~CL~Ppl~~~P~g~W~Cp~C~~~~~ 29 (148)
T cd04718 2 FHLCCLRPPLKEVPEGDWICPFCEVEKS 29 (148)
T ss_pred cccccCCCCCCCCCCCCcCCCCCcCCCC
Confidence 77788877665422 6999976543
No 164
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=57.05 E-value=6.9 Score=21.53 Aligned_cols=34 Identities=24% Similarity=0.516 Sum_probs=22.1
Q ss_pred cccccccccccccCCCceeEcCCCCCcchHHhHHH
Q 036506 8 YYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDA 42 (86)
Q Consensus 8 ~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~ 42 (86)
....|.+|....-....... +.|...||..|...
T Consensus 35 ~~~~C~~C~~~~Ga~i~C~~-~~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 35 RKLKCSICKKKGGACIGCSH-PGCSRSFHVPCARK 68 (90)
T ss_pred hCCCCcCCCCCCCeEEEEeC-CCCCcEEChHHHcc
Confidence 45689999877322222222 25999999999755
No 165
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=52.30 E-value=1.2 Score=30.24 Aligned_cols=50 Identities=20% Similarity=0.224 Sum_probs=20.5
Q ss_pred CcccccccccccccCCCceeEc-CCCCCcchHHhHHHHHhcCCCccccccc
Q 036506 7 PYYCYCTVCLDGISDGQKFRRL-PECKHCFHVECIDAWFQSRSTCPLCRIE 56 (86)
Q Consensus 7 ~~~~~C~ICl~~~~~~~~~~~~-~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~ 56 (86)
+....||||-..-........- ..=.+.+|..|-..|--....||.|...
T Consensus 170 w~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~ 220 (290)
T PF04216_consen 170 WQRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNT 220 (290)
T ss_dssp TT-SS-TTT---EEEEEEE------EEEEEETTT--EEE--TTS-TTT---
T ss_pred ccCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCCC
Confidence 3457999999874322100000 0013567777888887777789999654
No 166
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=51.94 E-value=5 Score=27.96 Aligned_cols=50 Identities=22% Similarity=0.454 Sum_probs=37.6
Q ss_pred CcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCccccccccch
Q 036506 7 PYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVAI 59 (86)
Q Consensus 7 ~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 59 (86)
.....|-||...+..+.. .. .|.|.|+..|...|.+..+.||.|+....+
T Consensus 103 ~~~~~~~~~~g~l~vpt~--~q-g~w~qf~~~~p~~~~~~~~~~~d~~~~~~p 152 (324)
T KOG0824|consen 103 QDHDICYICYGKLTVPTR--IQ-GCWHQFCYVCPKSNFAMGNDCPDCRGKISP 152 (324)
T ss_pred CCccceeeeeeeEEeccc--cc-CceeeeeecCCchhhhhhhccchhhcCcCc
Confidence 345567888887776643 22 399999999999999988889988765443
No 167
>KOG1818 consensus Membrane trafficking and cell signaling protein HRS, contains VHS and FYVE domains [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=51.23 E-value=6.9 Score=29.87 Aligned_cols=53 Identities=19% Similarity=0.284 Sum_probs=36.0
Q ss_pred CCCCCCCcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhc--------CCCcccc
Q 036506 1 ETAAKCPYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQS--------RSTCPLC 53 (86)
Q Consensus 1 ~t~~~~~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~--------~~~CP~C 53 (86)
+|..|+....+|-.|...|..-..--....||-+||..|...-+.. .++|-.|
T Consensus 157 ~~~pdW~D~~~C~rCr~~F~~~~rkHHCr~CG~vFC~qcss~s~~lP~~Gi~~~VRVCd~C 217 (634)
T KOG1818|consen 157 ETAPDWIDSEECLRCRVKFGLTNRKHHCRNCGQVFCGQCSSKSLTLPKLGIEKPVRVCDSC 217 (634)
T ss_pred cCCcccccccccceeeeeeeeccccccccccchhhccCccccccCcccccccccceehhhh
Confidence 4677788889999999988642211122259999999998765532 3467666
No 168
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=50.51 E-value=13 Score=24.82 Aligned_cols=25 Identities=20% Similarity=0.406 Sum_probs=17.7
Q ss_pred cccccccccccCCCceeEcCCCCCcc
Q 036506 10 CYCTVCLDGISDGQKFRRLPECKHCF 35 (86)
Q Consensus 10 ~~C~ICl~~~~~~~~~~~~~~C~H~f 35 (86)
..||+|...+.....-.... .+|.|
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~-~~h~f 27 (272)
T PRK11088 3 YQCPLCHQPLTLEENSWICP-QNHQF 27 (272)
T ss_pred ccCCCCCcchhcCCCEEEcC-CCCCC
Confidence 57999999987554444444 57887
No 169
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=48.61 E-value=16 Score=19.05 Aligned_cols=29 Identities=14% Similarity=0.293 Sum_probs=12.2
Q ss_pred cccccccccccC--CCceeEcCCCCCcchHH
Q 036506 10 CYCTVCLDGISD--GQKFRRLPECKHCFHVE 38 (86)
Q Consensus 10 ~~C~ICl~~~~~--~~~~~~~~~C~H~fh~~ 38 (86)
..|+.|-..... .......+.||+.++.+
T Consensus 29 q~C~~CG~~~~~~~~~r~~~C~~Cg~~~~rD 59 (69)
T PF07282_consen 29 QTCPRCGHRNKKRRSGRVFTCPNCGFEMDRD 59 (69)
T ss_pred cCccCcccccccccccceEEcCCCCCEECcH
Confidence 345555554433 22233333344444443
No 170
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=48.45 E-value=12 Score=29.46 Aligned_cols=47 Identities=34% Similarity=0.693 Sum_probs=29.5
Q ss_pred Cccccccccccccc----CCC-----ceeEcCCCCCcchHHhHHHHHhcCCCcccccccc
Q 036506 7 PYYCYCTVCLDGIS----DGQ-----KFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEV 57 (86)
Q Consensus 7 ~~~~~C~ICl~~~~----~~~-----~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~ 57 (86)
+++..|+-|...|- .+. .....+.|.|..|..=|. +.+.||+|....
T Consensus 1129 ~~~~~c~ec~~kfP~CiasG~pIt~~~fWlC~~CkH~a~~~EIs----~y~~CPLCHs~~ 1184 (1189)
T KOG2041|consen 1129 PYDLQCSECQTKFPVCIASGRPITDNIFWLCPRCKHRAHQHEIS----KYNCCPLCHSME 1184 (1189)
T ss_pred ccCCCChhhcCcCceeeccCCccccceEEEcccccccccccccc----ccccCccccChh
Confidence 56677777766652 121 134566788887765543 367899997654
No 171
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=47.45 E-value=7.2 Score=32.43 Aligned_cols=53 Identities=28% Similarity=0.546 Sum_probs=39.9
Q ss_pred CCCCcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCC----Ccccccccc
Q 036506 4 AKCPYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRS----TCPLCRIEV 57 (86)
Q Consensus 4 ~~~~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~----~CP~Cr~~~ 57 (86)
..+..+..|.+|.......+.+.-. .|.-.||..|+.+-+.... .||-||..-
T Consensus 1103 ~~s~~~~~c~~cr~k~~~~~m~lc~-~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1103 DRSAVNALCKVCRRKKQDEKMLLCD-ECLSGFHLFCLRPALSSVPPGDWMCPSCRKEH 1159 (1404)
T ss_pred ccccchhhhhhhhhcccchhhhhhH-hhhhhHHHHhhhhhhccCCcCCccCCccchhh
Confidence 4566788999999987764443333 4888999999999887633 699998754
No 172
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=47.31 E-value=8.9 Score=20.22 Aligned_cols=13 Identities=31% Similarity=0.915 Sum_probs=10.1
Q ss_pred CCCccccccccch
Q 036506 47 RSTCPLCRIEVAI 59 (86)
Q Consensus 47 ~~~CP~Cr~~~~~ 59 (86)
...||+|..+...
T Consensus 39 ~p~CPlC~s~M~~ 51 (59)
T PF14169_consen 39 EPVCPLCKSPMVS 51 (59)
T ss_pred CccCCCcCCcccc
Confidence 4689999987654
No 173
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=46.64 E-value=11 Score=22.24 Aligned_cols=46 Identities=20% Similarity=0.330 Sum_probs=28.1
Q ss_pred cccccccccccccC--CCceeEcCCCCCcchHHhHHHHHhcCC--Ccccccc
Q 036506 8 YYCYCTVCLDGISD--GQKFRRLPECKHCFHVECIDAWFQSRS--TCPLCRI 55 (86)
Q Consensus 8 ~~~~C~ICl~~~~~--~~~~~~~~~C~H~fh~~Ci~~wl~~~~--~CP~Cr~ 55 (86)
.+..|.+|...|.- +.. .....|+|.+|..|-.. ..+.. .|-+|..
T Consensus 53 ~~~~C~~C~~~fg~l~~~~-~~C~~C~~~VC~~C~~~-~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRG-RVCVDCKHRVCKKCGVY-SKKEPIWLCKVCQK 102 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTC-EEETTTTEEEETTSEEE-TSSSCCEEEHHHHH
T ss_pred CCcchhhhCCcccccCCCC-CcCCcCCccccCccCCc-CCCCCCEEChhhHH
Confidence 66799999987642 223 34446999999998654 11122 4888855
No 174
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=46.29 E-value=12 Score=19.70 Aligned_cols=13 Identities=23% Similarity=0.769 Sum_probs=8.7
Q ss_pred CCCccccccccch
Q 036506 47 RSTCPLCRIEVAI 59 (86)
Q Consensus 47 ~~~CP~Cr~~~~~ 59 (86)
|+.||+|..+++.
T Consensus 3 HkHC~~CG~~Ip~ 15 (59)
T PF09889_consen 3 HKHCPVCGKPIPP 15 (59)
T ss_pred CCcCCcCCCcCCc
Confidence 5667777766654
No 175
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=45.62 E-value=13 Score=16.06 Aligned_cols=9 Identities=56% Similarity=1.250 Sum_probs=6.1
Q ss_pred Ccccccccc
Q 036506 49 TCPLCRIEV 57 (86)
Q Consensus 49 ~CP~Cr~~~ 57 (86)
.||+|...+
T Consensus 3 ~CPiC~~~v 11 (26)
T smart00734 3 QCPVCFREV 11 (26)
T ss_pred cCCCCcCcc
Confidence 478886655
No 176
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=45.57 E-value=16 Score=24.37 Aligned_cols=27 Identities=19% Similarity=0.426 Sum_probs=18.6
Q ss_pred chHHhHHHHHhcCCCccccccccchhh
Q 036506 35 FHVECIDAWFQSRSTCPLCRIEVAIVI 61 (86)
Q Consensus 35 fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 61 (86)
-|.+|-..-=++...||+|++.-.+.+
T Consensus 196 ~C~sC~qqIHRNAPiCPlCK~KsRSrn 222 (230)
T PF10146_consen 196 TCQSCHQQIHRNAPICPLCKAKSRSRN 222 (230)
T ss_pred hhHhHHHHHhcCCCCCcccccccccCC
Confidence 466676665556779999988665443
No 177
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=45.54 E-value=15 Score=24.77 Aligned_cols=27 Identities=19% Similarity=0.495 Sum_probs=18.7
Q ss_pred chHHhHHHHHhcCCCccccccccchhh
Q 036506 35 FHVECIDAWFQSRSTCPLCRIEVAIVI 61 (86)
Q Consensus 35 fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 61 (86)
.|.+|-.+--++...||+|+..-.+.+
T Consensus 251 ~ClsChqqIHRNAPiCPlCKaKsRSrN 277 (286)
T KOG4451|consen 251 VCLSCHQQIHRNAPICPLCKAKSRSRN 277 (286)
T ss_pred HHHHHHHHHhcCCCCCcchhhccccCC
Confidence 456666665566779999988655443
No 178
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=44.59 E-value=11 Score=25.59 Aligned_cols=41 Identities=20% Similarity=0.283 Sum_probs=30.5
Q ss_pred ccccccccccccCCCceeEcCCCCCcchHHhHHHHHhc--CCCccc
Q 036506 9 YCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQS--RSTCPL 52 (86)
Q Consensus 9 ~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~--~~~CP~ 52 (86)
+..|||=+..+.-+ ....+|+|.|-++-|...++. ...||.
T Consensus 189 ~nrCpitl~p~~~p---ils~kcnh~~e~D~I~~~lq~~~trvcp~ 231 (275)
T COG5627 189 SNRCPITLNPDFYP---ILSSKCNHKPEMDLINKKLQVECTRVCPR 231 (275)
T ss_pred cccCCcccCcchhH---HHHhhhcccccHHHHHHHhcCCceeecch
Confidence 46799988776554 233369999999999999985 456774
No 179
>PF05715 zf-piccolo: Piccolo Zn-finger; InterPro: IPR008899 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This (predicted) zinc finger is found in the bassoon and piccolo proteins, both of which are components of the presynaptic cytoskeletal matrix (PCM) assembled at the active zone of neurotransmitter release, where Piccolo plays a role in the trafficking of synaptic vesicles (SVs) [, , ]. The Piccolo zinc fingers were found to interact with the dual prenylated rab3A and VAMP2/Synaptobrevin II receptor PRA1. There are eight conserved cysteines in Piccolo-type zinc fingers, suggesting that they coordinates two zinc ligands. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding, 0045202 synapse
Probab=42.97 E-value=9.9 Score=20.12 Aligned_cols=10 Identities=50% Similarity=1.308 Sum_probs=6.4
Q ss_pred CCcccccccc
Q 036506 48 STCPLCRIEV 57 (86)
Q Consensus 48 ~~CP~Cr~~~ 57 (86)
..||+|+..+
T Consensus 3 ~~CPlCkt~~ 12 (61)
T PF05715_consen 3 SLCPLCKTTL 12 (61)
T ss_pred ccCCcccchh
Confidence 4577776655
No 180
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=42.93 E-value=26 Score=24.09 Aligned_cols=45 Identities=18% Similarity=0.507 Sum_probs=24.6
Q ss_pred ccccccccccccCCCceeEcCCC-CCcchHHhHHHH-HhcCCCcccc
Q 036506 9 YCYCTVCLDGISDGQKFRRLPEC-KHCFHVECIDAW-FQSRSTCPLC 53 (86)
Q Consensus 9 ~~~C~ICl~~~~~~~~~~~~~~C-~H~fh~~Ci~~w-l~~~~~CP~C 53 (86)
-..|.||++..-.+..-..+..= .=.=|++|+++| +..+..||-=
T Consensus 30 LsfChiCfEl~iegvpks~llHtkSlRGHrdCFEK~HlIanQ~~prs 76 (285)
T PF06937_consen 30 LSFCHICFELSIEGVPKSNLLHTKSLRGHRDCFEKYHLIANQDCPRS 76 (285)
T ss_pred eeecceeeccccccCccccccccccccchHHHHHHHHHHHcCCCCcc
Confidence 35678887764332211111101 113578999999 4457778843
No 181
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=42.07 E-value=18 Score=26.63 Aligned_cols=50 Identities=20% Similarity=0.569 Sum_probs=32.3
Q ss_pred Cccccccccccc-ccCCCceeEcCCCCCcchHHhHHHHHhc--------CCCccccccc
Q 036506 7 PYYCYCTVCLDG-ISDGQKFRRLPECKHCFHVECIDAWFQS--------RSTCPLCRIE 56 (86)
Q Consensus 7 ~~~~~C~ICl~~-~~~~~~~~~~~~C~H~fh~~Ci~~wl~~--------~~~CP~Cr~~ 56 (86)
.-+..|.+|+.. .-....+.....|+..||..|....... .-.|-+|...
T Consensus 166 ~~n~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~ 224 (464)
T KOG4323|consen 166 KVNLQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRG 224 (464)
T ss_pred cccceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccc
Confidence 345669999964 3333444455568999999998775432 1258888543
No 182
>PF15353 HECA: Headcase protein family homologue
Probab=41.57 E-value=22 Score=21.02 Aligned_cols=15 Identities=27% Similarity=0.756 Sum_probs=12.8
Q ss_pred CCCcchHHhHHHHHh
Q 036506 31 CKHCFHVECIDAWFQ 45 (86)
Q Consensus 31 C~H~fh~~Ci~~wl~ 45 (86)
.++..|..|+..|=.
T Consensus 40 ~~~~MH~~CF~~wE~ 54 (107)
T PF15353_consen 40 FGQYMHRECFEKWED 54 (107)
T ss_pred CCCchHHHHHHHHHH
Confidence 478999999999954
No 183
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.48 E-value=5.7 Score=24.61 Aligned_cols=49 Identities=24% Similarity=0.470 Sum_probs=25.3
Q ss_pred Cccccccccccc-ccCCCceeEcCCCCCcchHHhHHHHH-hcCC---Cccccccc
Q 036506 7 PYYCYCTVCLDG-ISDGQKFRRLPECKHCFHVECIDAWF-QSRS---TCPLCRIE 56 (86)
Q Consensus 7 ~~~~~C~ICl~~-~~~~~~~~~~~~C~H~fh~~Ci~~wl-~~~~---~CP~Cr~~ 56 (86)
..+..|.||+.. |.++....... |.-.||..|-.+.- ++++ .|-+|+..
T Consensus 63 ~ddatC~IC~KTKFADG~GH~C~Y-Cq~r~CARCGGrv~lrsNKv~wvcnlc~k~ 116 (169)
T KOG3799|consen 63 GDDATCGICHKTKFADGCGHNCSY-CQTRFCARCGGRVSLRSNKVMWVCNLCRKQ 116 (169)
T ss_pred CcCcchhhhhhcccccccCcccch-hhhhHHHhcCCeeeeccCceEEeccCCcHH
Confidence 567899999984 66552211111 33334444443321 2222 47778654
No 184
>PLN02248 cellulose synthase-like protein
Probab=40.88 E-value=26 Score=28.73 Aligned_cols=30 Identities=23% Similarity=0.495 Sum_probs=26.3
Q ss_pred CCCCcchHHhHHHHHhcCCCccccccccch
Q 036506 30 ECKHCFHVECIDAWFQSRSTCPLCRIEVAI 59 (86)
Q Consensus 30 ~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 59 (86)
.|+...|++|...-++....||-|+.++..
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (1135)
T PLN02248 149 ECGFKICRDCYIDAVKSGGICPGCKEPYKV 178 (1135)
T ss_pred cccchhHHhHhhhhhhcCCCCCCCcccccc
Confidence 488999999999999988899999988743
No 185
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=40.59 E-value=39 Score=24.07 Aligned_cols=52 Identities=23% Similarity=0.466 Sum_probs=31.9
Q ss_pred Cccccccccccccc---------------CCC-ceeEcCCCCCcchHHhHHHHHhc---------CCCccccccccch
Q 036506 7 PYYCYCTVCLDGIS---------------DGQ-KFRRLPECKHCFHVECIDAWFQS---------RSTCPLCRIEVAI 59 (86)
Q Consensus 7 ~~~~~C~ICl~~~~---------------~~~-~~~~~~~C~H~fh~~Ci~~wl~~---------~~~CP~Cr~~~~~ 59 (86)
..+.+||+|+..-. .+- .....| |||+--..=..=|.+. +..||.|-+.+..
T Consensus 339 ~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~P-CGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 339 QRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNP-CGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred cccCcCCeeeeecceeeeeccccceeEecCCCcccccCC-cccccchhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 45778999997511 000 113455 9998655555556552 3479999876643
No 186
>PF06676 DUF1178: Protein of unknown function (DUF1178); InterPro: IPR009562 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.
Probab=39.52 E-value=7 Score=24.39 Aligned_cols=22 Identities=36% Similarity=0.955 Sum_probs=14.9
Q ss_pred CCCcchHHhHHHHHhcC-----------CCcccccccc
Q 036506 31 CKHCFHVECIDAWFQSR-----------STCPLCRIEV 57 (86)
Q Consensus 31 C~H~fh~~Ci~~wl~~~-----------~~CP~Cr~~~ 57 (86)
++|.| +.|+.+. -+||+|...-
T Consensus 10 ~gH~F-----EgWF~ss~~fd~Q~~~glv~CP~Cgs~~ 42 (148)
T PF06676_consen 10 NGHEF-----EGWFRSSAAFDRQQARGLVSCPVCGSTE 42 (148)
T ss_pred CCCcc-----ceecCCHHHHHHHHHcCCccCCCCCCCe
Confidence 56776 5688642 2799997653
No 187
>KOG4080 consensus Mitochondrial ribosomal protein L32 [Translation, ribosomal structure and biogenesis]
Probab=39.02 E-value=13 Score=23.80 Aligned_cols=27 Identities=22% Similarity=0.630 Sum_probs=16.2
Q ss_pred CceeEcCCCCCcchHHhHHHHHhcCCCccccccccc
Q 036506 23 QKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVA 58 (86)
Q Consensus 23 ~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 58 (86)
+.+...|.|||. | ..+..|+.|-..+.
T Consensus 91 ~nl~~CP~CGh~-k--------~a~~LC~~Cy~kV~ 117 (176)
T KOG4080|consen 91 DNLNTCPACGHI-K--------PAHTLCDYCYAKVH 117 (176)
T ss_pred hccccCcccCcc-c--------cccccHHHHHHHHH
Confidence 445677789884 2 23556777755443
No 188
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=38.51 E-value=33 Score=15.69 Aligned_cols=11 Identities=18% Similarity=0.522 Sum_probs=5.8
Q ss_pred ccccccccccc
Q 036506 10 CYCTVCLDGIS 20 (86)
Q Consensus 10 ~~C~ICl~~~~ 20 (86)
..||-|-..|.
T Consensus 3 ~~CP~C~~~~~ 13 (38)
T TIGR02098 3 IQCPNCKTSFR 13 (38)
T ss_pred EECCCCCCEEE
Confidence 34566655544
No 189
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=37.07 E-value=3.3 Score=21.06 Aligned_cols=34 Identities=24% Similarity=0.558 Sum_probs=16.0
Q ss_pred ccccc--ccccccCCCc--e--eEcCCCCCcchHHhHHHH
Q 036506 10 CYCTV--CLDGISDGQK--F--RRLPECKHCFHVECIDAW 43 (86)
Q Consensus 10 ~~C~I--Cl~~~~~~~~--~--~~~~~C~H~fh~~Ci~~w 43 (86)
..||- |-..+...+. . +..+.|++.||..|-..|
T Consensus 19 ~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~~~ 58 (64)
T PF01485_consen 19 RWCPNPDCEYIIEKDDGCNSPIVTCPSCGTEFCFKCGEPW 58 (64)
T ss_dssp C--TTSST---ECS-SSTTS--CCTTSCCSEECSSSTSES
T ss_pred cCCCCCCCcccEEecCCCCCCeeECCCCCCcCccccCccc
Confidence 35655 6665543321 1 344458888887776555
No 190
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=36.45 E-value=17 Score=27.95 Aligned_cols=49 Identities=22% Similarity=0.584 Sum_probs=29.6
Q ss_pred ccccccccccccCCCc-eeEcCCCCCcchHHhHHHHHhc-----CCCcccccccc
Q 036506 9 YCYCTVCLDGISDGQK-FRRLPECKHCFHVECIDAWFQS-----RSTCPLCRIEV 57 (86)
Q Consensus 9 ~~~C~ICl~~~~~~~~-~~~~~~C~H~fh~~Ci~~wl~~-----~~~CP~Cr~~~ 57 (86)
...|+||-..-..... ......|+-.||..|+..|+.. .-.||-||.-.
T Consensus 18 ~~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crvCe 72 (694)
T KOG4443|consen 18 CLMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRVCE 72 (694)
T ss_pred hhhhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCceeee
Confidence 3455555544322221 2223358999999999999874 23588887643
No 191
>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains). Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Probab=36.40 E-value=39 Score=15.81 Aligned_cols=36 Identities=25% Similarity=0.333 Sum_probs=22.8
Q ss_pred CcccccccccccccCCCceeEcCCCCCcchHHhHHH
Q 036506 7 PYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDA 42 (86)
Q Consensus 7 ~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~ 42 (86)
.....|.+|.+.+...........|+=..|..|...
T Consensus 9 ~~~~~C~~C~~~i~~~~~~~~C~~C~~~~H~~C~~~ 44 (49)
T smart00109 9 KKPTKCCVCRKSIWGSFQGLRCSWCKVKCHKKCAEK 44 (49)
T ss_pred CCCCCccccccccCcCCCCcCCCCCCchHHHHHHhh
Confidence 345679999887764211122334888888888765
No 192
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=36.37 E-value=31 Score=26.71 Aligned_cols=46 Identities=24% Similarity=0.455 Sum_probs=32.2
Q ss_pred ccccccccccCCCceeEcCCCCC-cchHHhHHHHHh--c----CCCccccccccchh
Q 036506 11 YCTVCLDGISDGQKFRRLPECKH-CFHVECIDAWFQ--S----RSTCPLCRIEVAIV 60 (86)
Q Consensus 11 ~C~ICl~~~~~~~~~~~~~~C~H-~fh~~Ci~~wl~--~----~~~CP~Cr~~~~~~ 60 (86)
.|+||-..+.-. ....||| ..+..|..+... . ...||+||..+...
T Consensus 2 ~c~ic~~s~~~~----~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~~~ 54 (669)
T KOG2231|consen 2 SCAICAFSPDFV----GRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVETK 54 (669)
T ss_pred CcceeecCcccc----ccccccccccchhhhhhhhhhcccccccccCcccccceeee
Confidence 588887765433 3445999 999999988643 2 44689999866543
No 193
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=36.18 E-value=21 Score=15.17 Aligned_cols=11 Identities=27% Similarity=0.863 Sum_probs=7.0
Q ss_pred Cccccccccch
Q 036506 49 TCPLCRIEVAI 59 (86)
Q Consensus 49 ~CP~Cr~~~~~ 59 (86)
.||.|...|..
T Consensus 4 ~C~~CgR~F~~ 14 (25)
T PF13913_consen 4 PCPICGRKFNP 14 (25)
T ss_pred cCCCCCCEECH
Confidence 47777666644
No 194
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=36.18 E-value=15 Score=17.21 Aligned_cols=29 Identities=24% Similarity=0.594 Sum_probs=15.9
Q ss_pred cCCCCCcchHHhHHHHHhcCCCccccccccc
Q 036506 28 LPECKHCFHVECIDAWFQSRSTCPLCRIEVA 58 (86)
Q Consensus 28 ~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 58 (86)
.+.||.+||..=.-+ .....|..|...|.
T Consensus 4 C~~Cg~~Yh~~~~pP--~~~~~Cd~cg~~L~ 32 (36)
T PF05191_consen 4 CPKCGRIYHIEFNPP--KVEGVCDNCGGELV 32 (36)
T ss_dssp ETTTTEEEETTTB----SSTTBCTTTTEBEB
T ss_pred cCCCCCccccccCCC--CCCCccCCCCCeeE
Confidence 345888888432111 23456877776553
No 195
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=36.10 E-value=23 Score=16.27 Aligned_cols=9 Identities=33% Similarity=1.161 Sum_probs=6.2
Q ss_pred CCccccccc
Q 036506 48 STCPLCRIE 56 (86)
Q Consensus 48 ~~CP~Cr~~ 56 (86)
..||+|.++
T Consensus 19 ~~CP~Cg~~ 27 (34)
T cd00729 19 EKCPICGAP 27 (34)
T ss_pred CcCcCCCCc
Confidence 478888663
No 196
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=35.07 E-value=35 Score=16.65 Aligned_cols=35 Identities=29% Similarity=0.511 Sum_probs=22.3
Q ss_pred Ccccccccccccc--cCCCceeEcCCCCCcchHHhHHH
Q 036506 7 PYYCYCTVCLDGI--SDGQKFRRLPECKHCFHVECIDA 42 (86)
Q Consensus 7 ~~~~~C~ICl~~~--~~~~~~~~~~~C~H~fh~~Ci~~ 42 (86)
.....|.+|.+.+ .......- ..|+-..|..|+..
T Consensus 9 ~~~~~C~~C~~~i~g~~~~g~~C-~~C~~~~H~~C~~~ 45 (53)
T PF00130_consen 9 SKPTYCDVCGKFIWGLGKQGYRC-SWCGLVCHKKCLSK 45 (53)
T ss_dssp SSTEB-TTSSSBECSSSSCEEEE-TTTT-EEETTGGCT
T ss_pred CCCCCCcccCcccCCCCCCeEEE-CCCCChHhhhhhhh
Confidence 5667899999988 22233333 35999999999744
No 197
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=34.61 E-value=20 Score=26.48 Aligned_cols=12 Identities=25% Similarity=0.885 Sum_probs=7.8
Q ss_pred Cccccccccchh
Q 036506 49 TCPLCRIEVAIV 60 (86)
Q Consensus 49 ~CP~Cr~~~~~~ 60 (86)
.||.|...+...
T Consensus 54 ~CP~C~~~L~~~ 65 (483)
T PF05502_consen 54 DCPICFSPLSVR 65 (483)
T ss_pred cCCCCCCcceeE
Confidence 577777766543
No 198
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=34.19 E-value=5.7 Score=17.09 Aligned_cols=6 Identities=50% Similarity=1.353 Sum_probs=2.6
Q ss_pred Cccccc
Q 036506 49 TCPLCR 54 (86)
Q Consensus 49 ~CP~Cr 54 (86)
.||.|.
T Consensus 18 fC~~CG 23 (26)
T PF13248_consen 18 FCPNCG 23 (26)
T ss_pred cChhhC
Confidence 344443
No 199
>PRK11827 hypothetical protein; Provisional
Probab=34.07 E-value=12 Score=19.74 Aligned_cols=18 Identities=17% Similarity=0.399 Sum_probs=12.1
Q ss_pred HHHhcCCCccccccccch
Q 036506 42 AWFQSRSTCPLCRIEVAI 59 (86)
Q Consensus 42 ~wl~~~~~CP~Cr~~~~~ 59 (86)
+||..--.||.|+..+..
T Consensus 3 ~~LLeILaCP~ckg~L~~ 20 (60)
T PRK11827 3 HRLLEIIACPVCNGKLWY 20 (60)
T ss_pred hHHHhheECCCCCCcCeE
Confidence 445555578999887654
No 200
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=33.86 E-value=6.3 Score=18.99 Aligned_cols=25 Identities=32% Similarity=0.513 Sum_probs=13.2
Q ss_pred CCCCcchHHhHHHHHhcCCCcccccc
Q 036506 30 ECKHCFHVECIDAWFQSRSTCPLCRI 55 (86)
Q Consensus 30 ~C~H~fh~~Ci~~wl~~~~~CP~Cr~ 55 (86)
.|||.|-..--..= .....||.|..
T Consensus 10 ~Cg~~fe~~~~~~~-~~~~~CP~Cg~ 34 (42)
T PF09723_consen 10 ECGHEFEVLQSISE-DDPVPCPECGS 34 (42)
T ss_pred CCCCEEEEEEEcCC-CCCCcCCCCCC
Confidence 47777654221110 12447999987
No 201
>PF12660 zf-TFIIIC: Putative zinc-finger of transcription factor IIIC complex; InterPro: IPR024764 This zinc-finger domain is at the very C terminus of a number of different TFIIIC subunit proteins. This domain might be involved in protein-DNA and/or protein-protein interactions [].; PDB: 2J04_C.
Probab=33.74 E-value=4 Score=23.54 Aligned_cols=51 Identities=16% Similarity=0.319 Sum_probs=15.9
Q ss_pred ccccccccccccCCC-ceeEcCCCCCcchHHhHHHHHhc----CCCccccccccchhh
Q 036506 9 YCYCTVCLDGISDGQ-KFRRLPECKHCFHVECIDAWFQS----RSTCPLCRIEVAIVI 61 (86)
Q Consensus 9 ~~~C~ICl~~~~~~~-~~~~~~~C~H~fh~~Ci~~wl~~----~~~CP~Cr~~~~~~~ 61 (86)
...|+||.+.+.-.+ ...... =||.|-+ |....+.- -+.|++|...+....
T Consensus 14 ~E~C~~C~~~i~~~~~~~~~C~-~GH~w~R-C~lT~l~i~~~~~r~C~~C~~~~l~~~ 69 (99)
T PF12660_consen 14 FEKCPICGAPIPFDDLDEAQCE-NGHVWPR-CALTFLPIQTPGVRVCPVCGRRALDPE 69 (99)
T ss_dssp ---------------SSEEE-T-TS-EEEB--SSS-SBS-SS-EEE-TTT--EEE-GG
T ss_pred cccccccccccccCCcCEeECC-CCCEEee-eeeeeeeeccCCeeEcCCCCCEEecCc
Confidence 378999999875333 223333 5898754 66665532 257999987765443
No 202
>PF14353 CpXC: CpXC protein
Probab=33.30 E-value=24 Score=20.83 Aligned_cols=47 Identities=15% Similarity=0.152 Sum_probs=24.6
Q ss_pred cccccccccccCCCceeEcCCCCCcchHHhHHHHHhc---CCCccccccccchh
Q 036506 10 CYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQS---RSTCPLCRIEVAIV 60 (86)
Q Consensus 10 ~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~---~~~CP~Cr~~~~~~ 60 (86)
.+||-|...+.......+ .-.....=..+-+.. ..+||.|.+.+...
T Consensus 2 itCP~C~~~~~~~v~~~I----~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~~~ 51 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVWTSI----NADEDPELKEKILDGSLFSFTCPSCGHKFRLE 51 (128)
T ss_pred cCCCCCCCeeEEEEEeEE----cCcCCHHHHHHHHcCCcCEEECCCCCCceecC
Confidence 568888887765422111 111223333444432 23799998876543
No 203
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=31.65 E-value=43 Score=20.02 Aligned_cols=30 Identities=13% Similarity=0.315 Sum_probs=19.7
Q ss_pred eEcCCCCCcchHHhHHHHHhcCCCccccccccchhh
Q 036506 26 RRLPECKHCFHVECIDAWFQSRSTCPLCRIEVAIVI 61 (86)
Q Consensus 26 ~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 61 (86)
+..|.|++.. ..+.+...|+.|++++..+.
T Consensus 70 V~CP~C~K~T------KmLGr~D~CM~C~~pLTLd~ 99 (114)
T PF11023_consen 70 VECPNCGKQT------KMLGRVDACMHCKEPLTLDP 99 (114)
T ss_pred eECCCCCChH------hhhchhhccCcCCCcCccCc
Confidence 4566677642 23445568999999987654
No 204
>KOG2789 consensus Putative Zn-finger protein [General function prediction only]
Probab=31.04 E-value=14 Score=26.89 Aligned_cols=34 Identities=15% Similarity=0.354 Sum_probs=24.5
Q ss_pred ccccccccccccCCCceeEcCCCCCcchHHhHHHHH
Q 036506 9 YCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWF 44 (86)
Q Consensus 9 ~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl 44 (86)
..+|+||+-++-.... ....|....|..|+.+.-
T Consensus 74 ~~ecpicflyyps~~n--~~rcC~~~Ic~ecf~~~~ 107 (482)
T KOG2789|consen 74 KTECPICFLYYPSAKN--LVRCCSETICGECFAPFG 107 (482)
T ss_pred cccCceeeeecccccc--hhhhhccchhhhheeccc
Confidence 4689999998765333 222488899999987753
No 205
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=30.89 E-value=8.7 Score=26.70 Aligned_cols=47 Identities=17% Similarity=0.320 Sum_probs=28.5
Q ss_pred cccccccccccccCCCceeEc---CCCCCcchHHhHHHHHhcCCCcccccc
Q 036506 8 YYCYCTVCLDGISDGQKFRRL---PECKHCFHVECIDAWFQSRSTCPLCRI 55 (86)
Q Consensus 8 ~~~~C~ICl~~~~~~~~~~~~---~~C~H~fh~~Ci~~wl~~~~~CP~Cr~ 55 (86)
....||||-..-.... +... ..=.+.+|..|-..|--....||.|..
T Consensus 183 ~~~~CPvCGs~P~~s~-~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 232 (305)
T TIGR01562 183 SRTLCPACGSPPVASM-VRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEE 232 (305)
T ss_pred CCCcCCCCCChhhhhh-hcccCCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 3458999998743211 0000 001245666688888777888999975
No 206
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=30.34 E-value=33 Score=15.07 Aligned_cols=28 Identities=36% Similarity=0.765 Sum_probs=14.4
Q ss_pred ccccccccccCCCceeEcCCCCCcchHHh
Q 036506 11 YCTVCLDGISDGQKFRRLPECKHCFHVEC 39 (86)
Q Consensus 11 ~C~ICl~~~~~~~~~~~~~~C~H~fh~~C 39 (86)
.|.||...+.... .-.-..|+-.+|..|
T Consensus 2 ~C~~C~~~~~~~~-~Y~C~~c~f~lh~~C 29 (30)
T PF03107_consen 2 WCDVCRRKIDGFY-FYHCSECCFTLHVRC 29 (30)
T ss_pred CCCCCCCCcCCCE-eEEeCCCCCeEcCcc
Confidence 4778877654432 222223555566554
No 207
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=30.32 E-value=35 Score=15.37 Aligned_cols=9 Identities=33% Similarity=0.977 Sum_probs=6.5
Q ss_pred CCCcccccc
Q 036506 47 RSTCPLCRI 55 (86)
Q Consensus 47 ~~~CP~Cr~ 55 (86)
...||+|.+
T Consensus 17 ~~~CP~Cg~ 25 (33)
T cd00350 17 PWVCPVCGA 25 (33)
T ss_pred CCcCcCCCC
Confidence 447898865
No 208
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=30.16 E-value=36 Score=22.87 Aligned_cols=21 Identities=14% Similarity=0.423 Sum_probs=15.4
Q ss_pred hHHHHHhcCCCccccccccch
Q 036506 39 CIDAWFQSRSTCPLCRIEVAI 59 (86)
Q Consensus 39 Ci~~wl~~~~~CP~Cr~~~~~ 59 (86)
-+..|.+.++.||.|..++..
T Consensus 91 ~l~~w~~~~~fC~~CG~~~~~ 111 (256)
T PRK00241 91 QLAEFYRSHRFCGYCGHPMHP 111 (256)
T ss_pred HHHHHhhcCccccccCCCCee
Confidence 456777788888888777644
No 209
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=30.04 E-value=8.9 Score=26.45 Aligned_cols=37 Identities=22% Similarity=0.654 Sum_probs=26.0
Q ss_pred ccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCC
Q 036506 11 YCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRS 48 (86)
Q Consensus 11 ~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~ 48 (86)
.|.+|++.+..+....... |...||..|+-.|+....
T Consensus 216 vC~~CF~el~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 252 (288)
T KOG1729|consen 216 VCDICFEELEKGARGDRED-SLPVFHGKCYPNWLTTGA 252 (288)
T ss_pred ecHHHHHHHhcccccchhh-cccccccccccccccccc
Confidence 8999999987533333333 555899999999887643
No 210
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=29.94 E-value=23 Score=20.87 Aligned_cols=26 Identities=19% Similarity=0.456 Sum_probs=17.7
Q ss_pred chHHhHHHHHhcCC---Cccccccccchh
Q 036506 35 FHVECIDAWFQSRS---TCPLCRIEVAIV 60 (86)
Q Consensus 35 fh~~Ci~~wl~~~~---~CP~Cr~~~~~~ 60 (86)
.|..|-.+++--++ .||.|...+...
T Consensus 11 ~Cp~CG~kFYDLnk~PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 11 TCPSCGAKFYDLNKDPIVCPKCGTEFPPE 39 (108)
T ss_pred cCCCCcchhccCCCCCccCCCCCCccCcc
Confidence 44556667786433 699998887665
No 211
>PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in NAD-dependent DNA ligases. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This domain is a small zinc binding motif that is presumably DNA binding. It is found only in NAD-dependent DNA ligases. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1DGS_A 1V9P_B 2OWO_A.
Probab=29.43 E-value=21 Score=15.68 Aligned_cols=10 Identities=40% Similarity=1.172 Sum_probs=5.3
Q ss_pred Cccccccccc
Q 036506 49 TCPLCRIEVA 58 (86)
Q Consensus 49 ~CP~Cr~~~~ 58 (86)
.||.|.+.+.
T Consensus 1 ~CP~C~s~l~ 10 (28)
T PF03119_consen 1 TCPVCGSKLV 10 (28)
T ss_dssp B-TTT--BEE
T ss_pred CcCCCCCEeE
Confidence 4899988775
No 212
>PF12773 DZR: Double zinc ribbon
Probab=28.91 E-value=31 Score=16.75 Aligned_cols=11 Identities=36% Similarity=0.890 Sum_probs=7.1
Q ss_pred CCCcccccccc
Q 036506 47 RSTCPLCRIEV 57 (86)
Q Consensus 47 ~~~CP~Cr~~~ 57 (86)
...||.|...+
T Consensus 29 ~~~C~~Cg~~~ 39 (50)
T PF12773_consen 29 KKICPNCGAEN 39 (50)
T ss_pred CCCCcCCcCCC
Confidence 34688887654
No 213
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=28.59 E-value=63 Score=18.89 Aligned_cols=34 Identities=29% Similarity=0.424 Sum_probs=25.1
Q ss_pred cccccccccccCCCceeEcCCCCCcchHHhHHHHHh
Q 036506 10 CYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQ 45 (86)
Q Consensus 10 ~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~ 45 (86)
-.|.||-.++-.+....... +-..|..|+..-..
T Consensus 3 WkC~iCg~~I~~gqlFTF~~--kG~VH~~C~~~~~~ 36 (101)
T PF09943_consen 3 WKCYICGKPIYEGQLFTFTK--KGPVHYECFREKAS 36 (101)
T ss_pred eEEEecCCeeeecceEEEec--CCcEeHHHHHHHHh
Confidence 36999999988877655554 35689999987554
No 214
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=28.13 E-value=32 Score=23.72 Aligned_cols=49 Identities=24% Similarity=0.489 Sum_probs=27.0
Q ss_pred CcccccccccccccC-C---Ccee--EcC----CCCCcchHHhHHHHHhcC----------CCccccccccch
Q 036506 7 PYYCYCTVCLDGISD-G---QKFR--RLP----ECKHCFHVECIDAWFQSR----------STCPLCRIEVAI 59 (86)
Q Consensus 7 ~~~~~C~ICl~~~~~-~---~~~~--~~~----~C~H~fh~~Ci~~wl~~~----------~~CP~Cr~~~~~ 59 (86)
..-..|.+|-..|.. + +.++ .++ .||-.|.+ +||.+. ..||.|.+.|-.
T Consensus 159 ~ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSR----PWLLQGHiRTHTGEKPF~C~hC~kAFAD 227 (279)
T KOG2462|consen 159 KKAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSR----PWLLQGHIRTHTGEKPFSCPHCGKAFAD 227 (279)
T ss_pred cccccCCCCCceeeehHHHhhHhhccCCCcccccccccccc----hHHhhcccccccCCCCccCCcccchhcc
Confidence 445567777766532 1 1111 122 35555543 688641 279999887753
No 215
>PRK01343 zinc-binding protein; Provisional
Probab=28.07 E-value=31 Score=18.04 Aligned_cols=12 Identities=25% Similarity=0.653 Sum_probs=9.0
Q ss_pred CCCccccccccc
Q 036506 47 RSTCPLCRIEVA 58 (86)
Q Consensus 47 ~~~CP~Cr~~~~ 58 (86)
...||+|++.+.
T Consensus 9 ~~~CP~C~k~~~ 20 (57)
T PRK01343 9 TRPCPECGKPST 20 (57)
T ss_pred CCcCCCCCCcCc
Confidence 457999998754
No 216
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=27.88 E-value=25 Score=24.59 Aligned_cols=34 Identities=18% Similarity=0.447 Sum_probs=24.4
Q ss_pred CcccccccccccccCCCceeEcCCCCCcchHHhHH
Q 036506 7 PYYCYCTVCLDGISDGQKFRRLPECKHCFHVECID 41 (86)
Q Consensus 7 ~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~ 41 (86)
.+...|.||..+....+.+..- .|.--||..|+.
T Consensus 312 ~~C~lC~IC~~P~~E~E~~FCD-~CDRG~HT~CVG 345 (381)
T KOG1512|consen 312 SSCELCRICLGPVIESEHLFCD-VCDRGPHTLCVG 345 (381)
T ss_pred cccHhhhccCCcccchheeccc-cccCCCCccccc
Confidence 3456789999987766555444 488888888874
No 217
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=27.48 E-value=32 Score=15.48 Aligned_cols=24 Identities=25% Similarity=0.519 Sum_probs=7.2
Q ss_pred ccccccccccC-CCceeEcCCCCCc
Q 036506 11 YCTVCLDGISD-GQKFRRLPECKHC 34 (86)
Q Consensus 11 ~C~ICl~~~~~-~~~~~~~~~C~H~ 34 (86)
.|+.|-.++.- +..+.+.+.|+|.
T Consensus 4 ~Cp~C~se~~y~D~~~~vCp~C~~e 28 (30)
T PF08274_consen 4 KCPLCGSEYTYEDGELLVCPECGHE 28 (30)
T ss_dssp --TTT-----EE-SSSEEETTTTEE
T ss_pred CCCCCCCcceeccCCEEeCCccccc
Confidence 36666665432 1223344445553
No 218
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=27.23 E-value=38 Score=21.72 Aligned_cols=31 Identities=23% Similarity=0.586 Sum_probs=18.7
Q ss_pred ccccc---ccccCCCceeEcCCCCCcchHHhHHHH
Q 036506 12 CTVCL---DGISDGQKFRRLPECKHCFHVECIDAW 43 (86)
Q Consensus 12 C~ICl---~~~~~~~~~~~~~~C~H~fh~~Ci~~w 43 (86)
|..|. +....+..|.-. -|.-.||+.||..-
T Consensus 2 C~~C~~~g~~~~kG~Lv~CQ-GCs~sYHk~CLG~R 35 (175)
T PF15446_consen 2 CDTCGYEGDDRNKGPLVYCQ-GCSSSYHKACLGPR 35 (175)
T ss_pred cccccCCCCCccCCCeEEcC-ccChHHHhhhcCCc
Confidence 55664 333444334444 48889999998653
No 219
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=27.02 E-value=32 Score=24.01 Aligned_cols=47 Identities=17% Similarity=0.306 Sum_probs=29.3
Q ss_pred cccccccccccccCCCceeEc-C-CCCCcchHHhHHHHHhcCCCcccccc
Q 036506 8 YYCYCTVCLDGISDGQKFRRL-P-ECKHCFHVECIDAWFQSRSTCPLCRI 55 (86)
Q Consensus 8 ~~~~C~ICl~~~~~~~~~~~~-~-~C~H~fh~~Ci~~wl~~~~~CP~Cr~ 55 (86)
....||+|-..-.... +..- . .=.+.+|..|-..|--....||.|..
T Consensus 186 ~~~~CPvCGs~P~~s~-v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSSV-VQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhhe-eeccCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 4689999998743220 0000 0 01245666688888777888999964
No 220
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=26.97 E-value=26 Score=27.53 Aligned_cols=33 Identities=27% Similarity=0.642 Sum_probs=23.7
Q ss_pred eEcCCCCCcchHHhHHHHHhcCCCccccccccc
Q 036506 26 RRLPECKHCFHVECIDAWFQSRSTCPLCRIEVA 58 (86)
Q Consensus 26 ~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 58 (86)
...|.|.-.||.+=++-...++..||.||.+..
T Consensus 1045 t~Cp~C~~~F~~eDFEl~vLqKGHCPFCrTS~d 1077 (1081)
T KOG1538|consen 1045 TMCPSCFQMFHSEDFELLVLQKGHCPFCRTSKD 1077 (1081)
T ss_pred hhCchHHhhhccchhhHHHHhcCCCCccccccc
Confidence 344556677777766666667889999998653
No 221
>COG4847 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.85 E-value=96 Score=18.05 Aligned_cols=36 Identities=33% Similarity=0.481 Sum_probs=26.8
Q ss_pred ccccccccccccCCCceeEcCCCCCcchHHhHHHHHhc
Q 036506 9 YCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQS 46 (86)
Q Consensus 9 ~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~ 46 (86)
.-.|.||-..+..+......+ .-..|.+|+.+-.++
T Consensus 6 ewkC~VCg~~iieGqkFTF~~--kGsVH~eCl~~s~~~ 41 (103)
T COG4847 6 EWKCYVCGGTIIEGQKFTFTK--KGSVHYECLAESKRK 41 (103)
T ss_pred eeeEeeeCCEeeeccEEEEee--CCcchHHHHHHHHhc
Confidence 457999999998887654443 556899999886554
No 222
>PF03966 Trm112p: Trm112p-like protein; InterPro: IPR005651 This family of short proteins have no known function. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The entry contains 2 families: Trm112, which is required for tRNA methylation in Saccharomyces cerevisiae (Baker's yeast) and is found in complexes with 2 tRNA methylases (TRM9 and TRM11) also with putative methyltransferase YDR140W []. The zinc-finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast []. The crystal structure of Ynr046w has been determined to 1.7 A resolution. It comprises a zinc-binding domain built from both the N- and C-terminal sequences and an inserted domain, absent from bacterial and archaeal orthologs of the protein, composed of three alpha-helices []. UPF0434, which are proteins that are functionally uncharacterised. ; PDB: 3Q87_A 2KPI_A 2K5R_A 2HF1_A 2JS4_A 2J6A_A 2JR6_A 2PK7_A 2JNY_A.
Probab=26.36 E-value=64 Score=16.93 Aligned_cols=10 Identities=40% Similarity=0.886 Sum_probs=5.9
Q ss_pred Cccccccccc
Q 036506 49 TCPLCRIEVA 58 (86)
Q Consensus 49 ~CP~Cr~~~~ 58 (86)
.||.|+..++
T Consensus 55 ~Cp~c~r~YP 64 (68)
T PF03966_consen 55 ICPECGREYP 64 (68)
T ss_dssp EETTTTEEEE
T ss_pred EcCCCCCEEe
Confidence 4666665554
No 223
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=25.90 E-value=32 Score=19.66 Aligned_cols=37 Identities=14% Similarity=0.482 Sum_probs=24.8
Q ss_pred ccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCccccccccc
Q 036506 9 YCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVA 58 (86)
Q Consensus 9 ~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 58 (86)
...|-||-..+.. =||.||..|.-. ...|.+|...+.
T Consensus 44 ~~~C~~CK~~v~q---------~g~~YCq~CAYk----kGiCamCGKki~ 80 (90)
T PF10235_consen 44 SSKCKICKTKVHQ---------PGAKYCQTCAYK----KGICAMCGKKIL 80 (90)
T ss_pred Ccccccccccccc---------CCCccChhhhcc----cCcccccCCeec
Confidence 3467777665332 366788888543 778999987763
No 224
>COG2835 Uncharacterized conserved protein [Function unknown]
Probab=25.06 E-value=30 Score=18.27 Aligned_cols=12 Identities=25% Similarity=0.805 Sum_probs=9.2
Q ss_pred Cccccccccchh
Q 036506 49 TCPLCRIEVAIV 60 (86)
Q Consensus 49 ~CP~Cr~~~~~~ 60 (86)
.||+||.++...
T Consensus 10 aCP~~kg~L~~~ 21 (60)
T COG2835 10 ACPVCKGPLVYD 21 (60)
T ss_pred eccCcCCcceEe
Confidence 599999986543
No 225
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=24.13 E-value=42 Score=21.21 Aligned_cols=25 Identities=20% Similarity=0.518 Sum_probs=18.3
Q ss_pred CCCcchHHhHHHHHhcCCCccccccccc
Q 036506 31 CKHCFHVECIDAWFQSRSTCPLCRIEVA 58 (86)
Q Consensus 31 C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 58 (86)
=.+.||..|-.+-.. .||.|..++.
T Consensus 26 ~~~~fC~kCG~~tI~---~Cp~C~~~Ir 50 (158)
T PF10083_consen 26 LREKFCSKCGAKTIT---SCPNCSTPIR 50 (158)
T ss_pred HHHHHHHHhhHHHHH---HCcCCCCCCC
Confidence 346788888877544 6999988764
No 226
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=24.06 E-value=71 Score=26.21 Aligned_cols=37 Identities=24% Similarity=0.489 Sum_probs=27.4
Q ss_pred CCCccccccccccc-ccCCCceeEcCCCCCcchHHhHH
Q 036506 5 KCPYYCYCTVCLDG-ISDGQKFRRLPECKHCFHVECID 41 (86)
Q Consensus 5 ~~~~~~~C~ICl~~-~~~~~~~~~~~~C~H~fh~~Ci~ 41 (86)
....+..|.||++. -.+.+.++....|+=..|.+|..
T Consensus 215 ~~~~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cyg 252 (1051)
T KOG0955|consen 215 LLEEDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYG 252 (1051)
T ss_pred ccCCCccceeecccccCCCceEEEcCCCcchhhhhccC
Confidence 45788999999995 33334555555688899999986
No 227
>PF10170 C6_DPF: Cysteine-rich domain; InterPro: IPR018785 This entry represents the N-terminal approximately 100 amino acids of a family of proteins found in a range of organisms, including human, chicken and Drosophila [, , ]. It contains between six and eight highly conserved cysteine residues and a characteristic DPF sequence motif. One member is putatively named as receptor for egg jelly protein but this could not confirmed.
Probab=23.79 E-value=79 Score=18.36 Aligned_cols=35 Identities=17% Similarity=0.418 Sum_probs=18.1
Q ss_pred ccccccccccccCCCceeEcCCCCCcchHHhHHHHHh
Q 036506 9 YCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQ 45 (86)
Q Consensus 9 ~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~ 45 (86)
+..|++|-..+-.+.....- =.-.||..|..++++
T Consensus 49 Ga~CS~C~~~VC~~~~CSlF--YtkrFC~pC~~~~~~ 83 (97)
T PF10170_consen 49 GAPCSICGKPVCVGQDCSLF--YTKRFCLPCVKRNLK 83 (97)
T ss_pred CccccccCCceEcCCCccEE--eeCceeHHHHHHHHH
Confidence 34566666655443221111 134577788777654
No 228
>COG4357 Zinc finger domain containing protein (CHY type) [Function unknown]
Probab=23.53 E-value=66 Score=18.76 Aligned_cols=13 Identities=23% Similarity=0.685 Sum_probs=9.5
Q ss_pred CCCccccccccch
Q 036506 47 RSTCPLCRIEVAI 59 (86)
Q Consensus 47 ~~~CP~Cr~~~~~ 59 (86)
..+||.|++++.+
T Consensus 80 ~~~Cp~C~spFNp 92 (105)
T COG4357 80 CGSCPYCQSPFNP 92 (105)
T ss_pred cCCCCCcCCCCCc
Confidence 4469999887754
No 229
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=23.52 E-value=42 Score=17.76 Aligned_cols=15 Identities=13% Similarity=0.339 Sum_probs=11.0
Q ss_pred CCCccccccccchhh
Q 036506 47 RSTCPLCRIEVAIVI 61 (86)
Q Consensus 47 ~~~CP~Cr~~~~~~~ 61 (86)
|+.|++|.+.++.+.
T Consensus 8 H~HC~VCg~aIp~de 22 (64)
T COG4068 8 HRHCVVCGKAIPPDE 22 (64)
T ss_pred CccccccCCcCCCcc
Confidence 667899988776543
No 230
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=23.08 E-value=36 Score=16.94 Aligned_cols=14 Identities=29% Similarity=0.493 Sum_probs=6.3
Q ss_pred CCCCcccccccccc
Q 036506 4 AKCPYYCYCTVCLD 17 (86)
Q Consensus 4 ~~~~~~~~C~ICl~ 17 (86)
++.+++-.||+|-.
T Consensus 29 ~~Lp~~w~CP~C~a 42 (47)
T PF00301_consen 29 EDLPDDWVCPVCGA 42 (47)
T ss_dssp GGS-TT-B-TTTSS
T ss_pred HHCCCCCcCcCCCC
Confidence 34566666666654
No 231
>PF10013 DUF2256: Uncharacterized protein conserved in bacteria (DUF2256); InterPro: IPR017136 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=23.08 E-value=44 Score=16.38 Aligned_cols=13 Identities=23% Similarity=0.685 Sum_probs=9.5
Q ss_pred CCCccccccccch
Q 036506 47 RSTCPLCRIEVAI 59 (86)
Q Consensus 47 ~~~CP~Cr~~~~~ 59 (86)
.+.||+|..+|.=
T Consensus 8 ~K~C~~C~rpf~W 20 (42)
T PF10013_consen 8 SKICPVCGRPFTW 20 (42)
T ss_pred CCcCcccCCcchH
Confidence 4579999877653
No 232
>PRK00418 DNA gyrase inhibitor; Reviewed
Probab=23.01 E-value=36 Score=18.08 Aligned_cols=11 Identities=36% Similarity=0.866 Sum_probs=8.4
Q ss_pred CCccccccccc
Q 036506 48 STCPLCRIEVA 58 (86)
Q Consensus 48 ~~CP~Cr~~~~ 58 (86)
..||+|++.+.
T Consensus 7 v~CP~C~k~~~ 17 (62)
T PRK00418 7 VNCPTCGKPVE 17 (62)
T ss_pred ccCCCCCCccc
Confidence 46999998753
No 233
>PF03884 DUF329: Domain of unknown function (DUF329); InterPro: IPR005584 The biological function of these short proteins is unknown, but they contain four conserved cysteines, suggesting that they all bind zinc. YacG (Q5X8H6 from SWISSPROT) from Escherichia coli has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins []. The conserved four cysteine motif in these proteins (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.; GO: 0008270 zinc ion binding; PDB: 1LV3_A.
Probab=22.63 E-value=29 Score=18.08 Aligned_cols=11 Identities=36% Similarity=0.954 Sum_probs=5.4
Q ss_pred Cccccccccch
Q 036506 49 TCPLCRIEVAI 59 (86)
Q Consensus 49 ~CP~Cr~~~~~ 59 (86)
.||+|++.+..
T Consensus 4 ~CP~C~k~~~~ 14 (57)
T PF03884_consen 4 KCPICGKPVEW 14 (57)
T ss_dssp E-TTT--EEE-
T ss_pred cCCCCCCeecc
Confidence 59999887654
No 234
>PF06677 Auto_anti-p27: Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27); InterPro: IPR009563 The proteins in this entry are functionally uncharacterised and include several proteins that characterise Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27). It is thought that the potential association of anti-p27 with anti-centromere antibodies suggests that autoantigen p27 might play a role in mitosis [].
Probab=22.54 E-value=60 Score=15.66 Aligned_cols=17 Identities=24% Similarity=0.622 Sum_probs=11.5
Q ss_pred HHhcCCCccccccccch
Q 036506 43 WFQSRSTCPLCRIEVAI 59 (86)
Q Consensus 43 wl~~~~~CP~Cr~~~~~ 59 (86)
|---...||.|..++..
T Consensus 13 ~~ML~~~Cp~C~~PL~~ 29 (41)
T PF06677_consen 13 WTMLDEHCPDCGTPLMR 29 (41)
T ss_pred HhHhcCccCCCCCeeEE
Confidence 33346789999877654
No 235
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=22.49 E-value=59 Score=23.97 Aligned_cols=32 Identities=22% Similarity=0.556 Sum_probs=19.5
Q ss_pred ccccccccccCC-Cce--eEcCCCCCcchHHhHHHH
Q 036506 11 YCTVCLDGISDG-QKF--RRLPECKHCFHVECIDAW 43 (86)
Q Consensus 11 ~C~ICl~~~~~~-~~~--~~~~~C~H~fh~~Ci~~w 43 (86)
.|.||.. |... +.. .....|||.-|.+|..+-
T Consensus 130 ~C~iC~k-fD~~~n~~~Wi~Cd~CgH~cH~dCALr~ 164 (446)
T PF07227_consen 130 MCCICSK-FDDNKNTCSWIGCDVCGHWCHLDCALRH 164 (446)
T ss_pred CccccCC-cccCCCCeeEEeccCCCceehhhhhccc
Confidence 5677755 3322 221 223359999999998763
No 236
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=22.46 E-value=38 Score=15.95 Aligned_cols=10 Identities=40% Similarity=1.075 Sum_probs=7.2
Q ss_pred Cccccccccc
Q 036506 49 TCPLCRIEVA 58 (86)
Q Consensus 49 ~CP~Cr~~~~ 58 (86)
.||.|+..+.
T Consensus 1 ~CP~C~~~l~ 10 (41)
T PF13453_consen 1 KCPRCGTELE 10 (41)
T ss_pred CcCCCCcccc
Confidence 4889987654
No 237
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=22.42 E-value=37 Score=13.02 Aligned_cols=9 Identities=33% Similarity=1.110 Sum_probs=3.9
Q ss_pred ccccccccc
Q 036506 50 CPLCRIEVA 58 (86)
Q Consensus 50 CP~Cr~~~~ 58 (86)
||+|...+.
T Consensus 3 C~~C~~~~~ 11 (24)
T PF13894_consen 3 CPICGKSFR 11 (24)
T ss_dssp -SSTS-EES
T ss_pred CcCCCCcCC
Confidence 666655543
No 238
>cd00029 C1 Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).
Probab=22.38 E-value=57 Score=15.38 Aligned_cols=35 Identities=29% Similarity=0.433 Sum_probs=20.8
Q ss_pred cccccccccccccCC-CceeEcCCCCCcchHHhHHH
Q 036506 8 YYCYCTVCLDGISDG-QKFRRLPECKHCFHVECIDA 42 (86)
Q Consensus 8 ~~~~C~ICl~~~~~~-~~~~~~~~C~H~fh~~Ci~~ 42 (86)
....|.+|.+.+... ........|+=..|..|...
T Consensus 10 ~~~~C~~C~~~i~~~~~~~~~C~~C~~~~H~~C~~~ 45 (50)
T cd00029 10 KPTFCDVCRKSIWGLFKQGLRCSWCKVKCHKKCADK 45 (50)
T ss_pred CCCChhhcchhhhccccceeEcCCCCCchhhhhhcc
Confidence 456788888876531 11122334777888888654
No 239
>PF09654 DUF2396: Protein of unknown function (DUF2396); InterPro: IPR013472 These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N terminus.
Probab=22.29 E-value=34 Score=21.36 Aligned_cols=14 Identities=29% Similarity=0.819 Sum_probs=10.4
Q ss_pred CCCccccccccchh
Q 036506 47 RSTCPLCRIEVAIV 60 (86)
Q Consensus 47 ~~~CP~Cr~~~~~~ 60 (86)
.-.||.||..++..
T Consensus 6 ei~CPhCRq~ipAL 19 (161)
T PF09654_consen 6 EIQCPHCRQTIPAL 19 (161)
T ss_pred cCcCchhhcccchh
Confidence 34799999987543
No 240
>TIGR02652 conserved hypothetical protein TIGR02652, cyanobacterial. Members of this family of conserved hypothetical proteins are found, so far, only in the Cyanobacteria. Members are about 170 amino acids long and share a motif CxxCx(14)CxxH near the amino end.
Probab=22.25 E-value=33 Score=21.41 Aligned_cols=14 Identities=29% Similarity=0.838 Sum_probs=10.5
Q ss_pred CCCccccccccchh
Q 036506 47 RSTCPLCRIEVAIV 60 (86)
Q Consensus 47 ~~~CP~Cr~~~~~~ 60 (86)
.-.||.||..+..-
T Consensus 9 ei~CPhCRQ~ipAL 22 (163)
T TIGR02652 9 EIRCPHCRQNIPAL 22 (163)
T ss_pred cCcCchhhcccchh
Confidence 45799999987543
No 241
>COG5242 TFB4 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription / DNA replication, recombination, and repair]
Probab=22.10 E-value=44 Score=22.70 Aligned_cols=11 Identities=18% Similarity=0.634 Sum_probs=6.0
Q ss_pred CCCcccccccc
Q 036506 47 RSTCPLCRIEV 57 (86)
Q Consensus 47 ~~~CP~Cr~~~ 57 (86)
...||.|...+
T Consensus 274 ~~~C~~C~skF 284 (296)
T COG5242 274 VPVCKKCKSKF 284 (296)
T ss_pred cCcCccccccc
Confidence 34566665555
No 242
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=21.61 E-value=40 Score=16.98 Aligned_cols=14 Identities=36% Similarity=0.650 Sum_probs=8.7
Q ss_pred CCCccccccccccc
Q 036506 5 KCPYYCYCTVCLDG 18 (86)
Q Consensus 5 ~~~~~~~C~ICl~~ 18 (86)
+.+++-.||+|-..
T Consensus 30 ~Lp~~w~CP~C~a~ 43 (50)
T cd00730 30 DLPDDWVCPVCGAG 43 (50)
T ss_pred HCCCCCCCCCCCCc
Confidence 45666677777543
No 243
>PRK11595 DNA utilization protein GntX; Provisional
Probab=21.50 E-value=86 Score=20.46 Aligned_cols=39 Identities=18% Similarity=0.406 Sum_probs=21.9
Q ss_pred cccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCcccccccc
Q 036506 10 CYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEV 57 (86)
Q Consensus 10 ~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~ 57 (86)
..|.+|-..+... ...+|..|...+-.-...||.|..++
T Consensus 6 ~~C~~C~~~~~~~---------~~~lC~~C~~~l~~~~~~C~~Cg~~~ 44 (227)
T PRK11595 6 GLCWLCRMPLALS---------HWGICSVCSRALRTLKTCCPQCGLPA 44 (227)
T ss_pred CcCccCCCccCCC---------CCcccHHHHhhCCcccCcCccCCCcC
Confidence 4688887765322 11256667666432234688886543
No 244
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=21.34 E-value=45 Score=20.36 Aligned_cols=25 Identities=4% Similarity=0.024 Sum_probs=15.2
Q ss_pred hHHhHHHHHhcCC---Cccccccccchh
Q 036506 36 HVECIDAWFQSRS---TCPLCRIEVAIV 60 (86)
Q Consensus 36 h~~Ci~~wl~~~~---~CP~Cr~~~~~~ 60 (86)
|..|-.+++--++ .||.|...+...
T Consensus 12 Cp~cg~kFYDLnk~p~vcP~cg~~~~~~ 39 (129)
T TIGR02300 12 CPNTGSKFYDLNRRPAVSPYTGEQFPPE 39 (129)
T ss_pred CCCcCccccccCCCCccCCCcCCccCcc
Confidence 3345555675433 699998876544
No 245
>COG0675 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=21.24 E-value=96 Score=20.64 Aligned_cols=27 Identities=19% Similarity=0.499 Sum_probs=13.4
Q ss_pred cccccccccccCCCceeEcCCCCCcchHHh
Q 036506 10 CYCTVCLDGISDGQKFRRLPECKHCFHVEC 39 (86)
Q Consensus 10 ~~C~ICl~~~~~~~~~~~~~~C~H~fh~~C 39 (86)
..|+.|-. +. ......+.||+.+|.+=
T Consensus 310 ~~C~~cg~-~~--~r~~~C~~cg~~~~rD~ 336 (364)
T COG0675 310 KTCPCCGH-LS--GRLFKCPRCGFVHDRDV 336 (364)
T ss_pred ccccccCC-cc--ceeEECCCCCCeehhhH
Confidence 45666665 22 22234445666666553
No 246
>COG1545 Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]
Probab=21.15 E-value=68 Score=19.55 Aligned_cols=23 Identities=26% Similarity=0.719 Sum_probs=16.2
Q ss_pred EcCCCCCcchHHhHHHHHhcCCCcccccccc
Q 036506 27 RLPECKHCFHVECIDAWFQSRSTCPLCRIEV 57 (86)
Q Consensus 27 ~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~ 57 (86)
..+.|||.|+. -+..||.|....
T Consensus 31 kC~~CG~v~~P--------Pr~~Cp~C~~~~ 53 (140)
T COG1545 31 KCKKCGRVYFP--------PRAYCPKCGSET 53 (140)
T ss_pred EcCCCCeEEcC--------CcccCCCCCCCC
Confidence 44468998864 355799998763
No 247
>PRK00420 hypothetical protein; Validated
Probab=21.05 E-value=86 Score=18.63 Aligned_cols=12 Identities=17% Similarity=0.412 Sum_probs=8.0
Q ss_pred CCccccccccch
Q 036506 48 STCPLCRIEVAI 59 (86)
Q Consensus 48 ~~CP~Cr~~~~~ 59 (86)
..||.|...+..
T Consensus 41 ~~Cp~Cg~~~~v 52 (112)
T PRK00420 41 VVCPVHGKVYIV 52 (112)
T ss_pred eECCCCCCeeee
Confidence 358888776554
No 248
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=20.66 E-value=8.6 Score=28.10 Aligned_cols=11 Identities=18% Similarity=0.606 Sum_probs=6.2
Q ss_pred Cccccccccch
Q 036506 49 TCPLCRIEVAI 59 (86)
Q Consensus 49 ~CP~Cr~~~~~ 59 (86)
.|-+|..++..
T Consensus 396 rCs~C~~PI~P 406 (468)
T KOG1701|consen 396 RCSVCGNPILP 406 (468)
T ss_pred chhhccCCccC
Confidence 56666655543
No 249
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=20.26 E-value=73 Score=19.51 Aligned_cols=7 Identities=43% Similarity=1.355 Sum_probs=4.9
Q ss_pred Ccccccc
Q 036506 49 TCPLCRI 55 (86)
Q Consensus 49 ~CP~Cr~ 55 (86)
.||+|-.
T Consensus 46 ~CPvC~~ 52 (131)
T COG1645 46 FCPVCGY 52 (131)
T ss_pred ECCCCCc
Confidence 5888863
Done!