Query 036506
Match_columns 86
No_of_seqs 149 out of 1321
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 03:50:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036506.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036506hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ect_A Ring finger protein 126 99.8 3.5E-19 1.2E-23 98.2 4.4 58 3-61 9-66 (78)
2 2kiz_A E3 ubiquitin-protein li 99.7 1.1E-18 3.7E-23 94.2 4.6 57 3-60 8-64 (69)
3 1iym_A EL5; ring-H2 finger, ub 99.7 8.2E-19 2.8E-23 90.8 3.4 52 7-58 3-54 (55)
4 1x4j_A Ring finger protein 38; 99.7 7.1E-19 2.4E-23 96.4 3.3 53 6-59 20-72 (75)
5 2ep4_A Ring finger protein 24; 99.7 1.4E-18 4.9E-23 94.8 4.5 55 4-59 10-64 (74)
6 2l0b_A E3 ubiquitin-protein li 99.7 2.2E-18 7.4E-23 97.8 4.6 54 5-59 36-89 (91)
7 1v87_A Deltex protein 2; ring- 99.7 1E-17 3.5E-22 98.1 5.2 60 7-67 23-102 (114)
8 2ecl_A Ring-box protein 2; RNF 99.7 1.1E-17 3.6E-22 93.2 4.3 53 7-59 13-76 (81)
9 2ea6_A Ring finger protein 4; 99.7 2.4E-17 8.1E-22 88.5 3.3 55 3-58 9-67 (69)
10 3ng2_A RNF4, snurf, ring finge 99.7 2.1E-17 7.2E-22 89.3 2.9 55 4-59 5-63 (71)
11 2ecm_A Ring finger and CHY zin 99.7 3.8E-17 1.3E-21 84.3 3.7 51 7-58 3-54 (55)
12 2djb_A Polycomb group ring fin 99.7 1E-16 3.6E-21 87.1 4.7 55 3-60 9-63 (72)
13 2d8t_A Dactylidin, ring finger 99.7 5.7E-17 2E-21 87.9 3.6 53 5-61 11-63 (71)
14 2yur_A Retinoblastoma-binding 99.6 2.4E-16 8.1E-21 86.2 4.5 55 2-59 8-64 (74)
15 2xeu_A Ring finger protein 4; 99.6 8.7E-17 3E-21 85.1 2.6 51 8-59 2-56 (64)
16 1chc_A Equine herpes virus-1 r 99.6 1.5E-16 5.3E-21 85.3 3.5 50 7-59 3-52 (68)
17 3dpl_R Ring-box protein 1; ubi 99.6 3.7E-16 1.3E-20 91.1 4.5 50 8-58 36-100 (106)
18 2ecn_A Ring finger protein 141 99.6 1.1E-16 3.9E-21 86.3 2.1 52 3-59 9-60 (70)
19 2ct2_A Tripartite motif protei 99.6 7.4E-16 2.5E-20 86.1 5.3 57 3-60 9-69 (88)
20 2csy_A Zinc finger protein 183 99.6 5.2E-16 1.8E-20 86.0 4.4 51 4-58 10-60 (81)
21 2ecy_A TNF receptor-associated 99.6 9.8E-16 3.4E-20 81.9 4.5 52 4-59 10-62 (66)
22 2ysl_A Tripartite motif-contai 99.6 9.6E-16 3.3E-20 83.1 4.0 52 4-59 15-69 (73)
23 4ayc_A E3 ubiquitin-protein li 99.6 5.8E-16 2E-20 93.6 2.8 48 8-59 52-99 (138)
24 1t1h_A Gspef-atpub14, armadill 99.6 1.5E-15 5.2E-20 83.4 4.0 52 4-59 3-55 (78)
25 2d8s_A Cellular modulator of i 99.6 1.4E-15 4.9E-20 84.6 3.2 53 6-60 12-71 (80)
26 2ecw_A Tripartite motif-contai 99.6 3.9E-15 1.3E-19 82.4 5.0 52 4-59 14-71 (85)
27 2egp_A Tripartite motif-contai 99.6 9.5E-16 3.2E-20 84.2 2.3 52 4-59 7-65 (79)
28 3lrq_A E3 ubiquitin-protein li 99.6 1.7E-15 5.8E-20 87.1 3.3 50 7-60 20-71 (100)
29 2ysj_A Tripartite motif-contai 99.6 5.9E-15 2E-19 78.1 5.0 46 4-53 15-63 (63)
30 4ap4_A E3 ubiquitin ligase RNF 99.6 2.1E-15 7.3E-20 89.5 3.5 54 6-60 4-61 (133)
31 3ztg_A E3 ubiquitin-protein li 99.5 6.4E-15 2.2E-19 83.2 4.7 52 3-57 7-60 (92)
32 2ecv_A Tripartite motif-contai 99.5 6E-15 2E-19 81.7 4.0 52 4-59 14-71 (85)
33 2y43_A E3 ubiquitin-protein li 99.5 7E-15 2.4E-19 84.1 3.7 50 7-59 20-69 (99)
34 4a0k_B E3 ubiquitin-protein li 99.5 1.1E-15 3.7E-20 90.5 0.2 50 8-58 47-111 (117)
35 2ecj_A Tripartite motif-contai 99.5 1E-14 3.5E-19 75.7 3.7 46 4-53 10-58 (58)
36 2ckl_A Polycomb group ring fin 99.5 9.2E-15 3.1E-19 84.9 3.7 50 6-59 12-62 (108)
37 1g25_A CDK-activating kinase a 99.5 1.1E-14 3.7E-19 77.5 3.5 51 8-59 2-55 (65)
38 3fl2_A E3 ubiquitin-protein li 99.5 1.4E-14 4.7E-19 86.0 3.3 49 7-59 50-99 (124)
39 2kr4_A Ubiquitin conjugation f 99.5 4.4E-14 1.5E-18 79.2 4.8 53 3-59 8-60 (85)
40 3hct_A TNF receptor-associated 99.5 2.9E-14 9.9E-19 84.0 4.0 53 4-60 13-66 (118)
41 2ct0_A Non-SMC element 1 homol 99.5 4.1E-14 1.4E-18 77.6 4.3 51 7-60 13-65 (74)
42 4ap4_A E3 ubiquitin ligase RNF 99.5 4.8E-14 1.6E-18 83.6 3.8 54 6-60 69-126 (133)
43 2ckl_B Ubiquitin ligase protei 99.4 3.4E-14 1.2E-18 87.9 3.1 50 7-59 52-102 (165)
44 3l11_A E3 ubiquitin-protein li 99.4 1.6E-14 5.6E-19 84.6 1.6 52 4-59 10-62 (115)
45 1e4u_A Transcriptional repress 99.4 1E-13 3.6E-18 76.6 4.5 56 4-60 6-63 (78)
46 1rmd_A RAG1; V(D)J recombinati 99.4 6.5E-14 2.2E-18 82.1 3.3 50 7-60 21-71 (116)
47 2kre_A Ubiquitin conjugation f 99.4 1.1E-13 3.8E-18 79.8 4.2 52 4-59 24-75 (100)
48 1jm7_A BRCA1, breast cancer ty 99.4 5E-14 1.7E-18 81.8 2.7 49 7-59 19-70 (112)
49 1wgm_A Ubiquitin conjugation f 99.4 1.5E-13 5.2E-18 78.9 4.5 52 4-59 17-69 (98)
50 1z6u_A NP95-like ring finger p 99.4 6.4E-14 2.2E-18 85.9 2.9 50 7-60 76-126 (150)
51 3knv_A TNF receptor-associated 99.4 1.3E-13 4.4E-18 83.8 2.6 50 5-58 27-77 (141)
52 2vje_A E3 ubiquitin-protein li 99.3 4.5E-13 1.5E-17 71.4 2.5 49 6-58 5-56 (64)
53 3hcs_A TNF receptor-associated 99.3 1.2E-12 4E-17 81.2 3.8 53 4-60 13-66 (170)
54 1jm7_B BARD1, BRCA1-associated 99.3 3E-13 1E-17 79.5 0.4 46 7-58 20-66 (117)
55 1bor_A Transcription factor PM 99.3 3E-13 1E-17 70.2 0.3 46 7-59 4-49 (56)
56 2vje_B MDM4 protein; proto-onc 99.3 1.4E-12 4.7E-17 69.3 2.4 50 7-58 5-55 (63)
57 2yu4_A E3 SUMO-protein ligase 99.3 2.1E-12 7.2E-17 73.4 3.2 49 5-56 3-59 (94)
58 2y1n_A E3 ubiquitin-protein li 99.3 2.8E-12 9.5E-17 88.7 3.9 48 8-59 331-379 (389)
59 2c2l_A CHIP, carboxy terminus 99.2 5.7E-12 1.9E-16 82.5 4.2 51 5-59 204-255 (281)
60 4ic3_A E3 ubiquitin-protein li 99.2 1.6E-12 5.6E-17 70.9 1.1 45 7-59 22-67 (74)
61 3k1l_B Fancl; UBC, ring, RWD, 99.2 6.7E-12 2.3E-16 85.7 2.2 57 5-61 304-375 (381)
62 1wim_A KIAA0161 protein; ring 99.2 2E-11 6.7E-16 69.2 3.4 53 7-60 3-67 (94)
63 2f42_A STIP1 homology and U-bo 99.1 3.5E-11 1.2E-15 75.7 4.5 52 4-59 101-153 (179)
64 2ecg_A Baculoviral IAP repeat- 99.1 2.5E-11 8.5E-16 66.2 1.4 45 7-59 23-68 (75)
65 2ea5_A Cell growth regulator w 99.1 1.1E-10 3.8E-15 62.8 3.7 47 5-59 11-58 (68)
66 2yho_A E3 ubiquitin-protein li 99.0 2.6E-11 8.8E-16 67.0 0.3 46 7-60 16-62 (79)
67 3htk_C E3 SUMO-protein ligase 99.0 1.4E-10 4.9E-15 76.6 3.5 52 5-59 177-232 (267)
68 1vyx_A ORF K3, K3RING; zinc-bi 99.0 2.3E-10 7.8E-15 60.2 3.5 51 5-58 2-58 (60)
69 3t6p_A Baculoviral IAP repeat- 98.8 5.5E-10 1.9E-14 76.3 0.6 45 7-59 293-338 (345)
70 2bay_A PRE-mRNA splicing facto 98.8 2.3E-09 8E-14 56.4 2.4 49 9-60 3-51 (61)
71 3nw0_A Non-structural maintena 98.6 4E-08 1.4E-12 64.1 3.6 49 9-60 180-230 (238)
72 3vk6_A E3 ubiquitin-protein li 98.5 7.8E-08 2.7E-12 55.0 3.7 47 11-60 3-50 (101)
73 2jun_A Midline-1; B-BOX, TRIM, 97.0 0.00046 1.6E-08 38.8 2.8 35 8-43 2-36 (101)
74 2lri_C Autoimmune regulator; Z 96.7 0.0011 3.8E-08 35.0 2.7 49 4-56 7-59 (66)
75 2ko5_A Ring finger protein Z; 96.6 0.00083 2.8E-08 37.9 1.8 49 8-61 27-75 (99)
76 1wil_A KIAA1045 protein; ring 95.6 0.013 4.5E-07 32.4 3.3 39 3-43 9-47 (89)
77 2vpb_A Hpygo1, pygopus homolog 95.1 0.021 7.3E-07 29.9 3.0 37 4-40 3-40 (65)
78 2l5u_A Chromodomain-helicase-D 94.9 0.023 7.9E-07 29.2 2.7 48 4-55 6-57 (61)
79 1we9_A PHD finger family prote 94.7 0.02 6.8E-07 29.5 2.2 51 5-55 2-57 (64)
80 3m62_A Ubiquitin conjugation f 94.5 0.05 1.7E-06 41.6 4.7 52 4-59 886-938 (968)
81 2k16_A Transcription initiatio 94.2 0.013 4.3E-07 31.3 0.8 52 5-57 14-69 (75)
82 2yql_A PHD finger protein 21A; 93.5 0.0081 2.8E-07 30.4 -0.8 48 3-54 3-54 (56)
83 1f62_A Transcription factor WS 93.5 0.035 1.2E-06 27.3 1.5 44 11-55 2-49 (51)
84 1mm2_A MI2-beta; PHD, zinc fin 93.1 0.014 4.9E-07 30.0 -0.3 49 4-56 4-56 (61)
85 1wep_A PHF8; structural genomi 92.8 0.11 3.7E-06 27.9 3.0 50 7-57 10-64 (79)
86 1weo_A Cellulose synthase, cat 92.7 0.34 1.2E-05 27.0 4.9 53 8-60 15-71 (93)
87 2lv9_A Histone-lysine N-methyl 92.7 0.038 1.3E-06 31.1 1.1 48 7-56 26-76 (98)
88 3o36_A Transcription intermedi 92.1 0.027 9.3E-07 34.8 -0.0 47 7-57 2-52 (184)
89 3v43_A Histone acetyltransfera 91.9 0.037 1.3E-06 31.7 0.4 46 10-55 62-111 (112)
90 3u5n_A E3 ubiquitin-protein li 91.8 0.031 1E-06 35.3 0.0 48 5-56 3-54 (207)
91 2cs3_A Protein C14ORF4, MY039 91.8 0.4 1.4E-05 26.2 4.4 42 5-46 11-52 (93)
92 2yt5_A Metal-response element- 91.4 0.11 3.7E-06 26.8 1.9 51 5-55 2-60 (66)
93 2kgg_A Histone demethylase jar 90.8 0.24 8.3E-06 24.4 2.8 44 11-54 4-52 (52)
94 2ysm_A Myeloid/lymphoid or mix 90.0 0.075 2.6E-06 30.2 0.5 40 5-45 3-42 (111)
95 2lbm_A Transcriptional regulat 89.7 0.67 2.3E-05 27.8 4.5 48 5-56 59-117 (142)
96 1xwh_A Autoimmune regulator; P 89.6 0.041 1.4E-06 28.6 -0.8 46 6-55 5-54 (66)
97 2puy_A PHD finger protein 21A; 89.6 0.037 1.3E-06 28.2 -0.9 46 8-57 4-53 (60)
98 1vfy_A Phosphatidylinositol-3- 89.1 0.36 1.2E-05 25.4 2.7 36 7-42 9-44 (73)
99 2e6r_A Jumonji/ARID domain-con 88.5 0.045 1.5E-06 30.4 -1.2 51 5-56 12-66 (92)
100 2ku3_A Bromodomain-containing 88.4 0.69 2.4E-05 24.3 3.6 52 4-55 11-65 (71)
101 2xb1_A Pygopus homolog 2, B-ce 88.2 0.26 9E-06 27.9 1.9 48 10-57 4-62 (105)
102 1y02_A CARP2, FYVE-ring finger 88.0 0.015 5.2E-07 34.1 -3.5 48 9-56 19-66 (120)
103 1wem_A Death associated transc 88.0 0.61 2.1E-05 24.6 3.2 48 7-56 14-70 (76)
104 1fp0_A KAP-1 corepressor; PHD 87.6 0.18 6.1E-06 27.9 0.9 47 6-56 22-72 (88)
105 1wen_A Inhibitor of growth fam 87.5 0.39 1.3E-05 25.3 2.2 46 6-56 13-65 (71)
106 3ql9_A Transcriptional regulat 87.4 1.3 4.4E-05 26.1 4.6 49 4-56 52-111 (129)
107 1z2q_A LM5-1; membrane protein 86.1 0.79 2.7E-05 24.7 3.1 36 7-42 19-54 (84)
108 1wfk_A Zinc finger, FYVE domai 85.7 0.74 2.5E-05 25.2 2.8 53 6-58 6-65 (88)
109 3lqh_A Histone-lysine N-methyl 85.7 0.55 1.9E-05 29.2 2.5 50 9-58 2-65 (183)
110 2yw8_A RUN and FYVE domain-con 85.2 0.66 2.3E-05 24.9 2.4 36 7-42 17-52 (82)
111 3v43_A Histone acetyltransfera 85.0 2.1 7.2E-05 24.2 4.6 34 8-41 4-42 (112)
112 1joc_A EEA1, early endosomal a 84.5 0.7 2.4E-05 26.9 2.5 35 8-42 68-102 (125)
113 3t7l_A Zinc finger FYVE domain 84.0 0.86 2.9E-05 25.0 2.6 50 8-57 19-74 (90)
114 2vnf_A ING 4, P29ING4, inhibit 84.0 0.36 1.2E-05 24.5 1.0 45 6-55 7-58 (60)
115 4gne_A Histone-lysine N-methyl 83.9 0.92 3.2E-05 25.8 2.8 49 3-57 9-63 (107)
116 3shb_A E3 ubiquitin-protein li 83.7 0.17 5.7E-06 27.3 -0.4 44 11-55 28-76 (77)
117 1dvp_A HRS, hepatocyte growth 83.5 0.8 2.7E-05 28.9 2.6 36 7-42 159-194 (220)
118 3c6w_A P28ING5, inhibitor of g 83.5 0.41 1.4E-05 24.3 1.0 45 6-55 6-57 (59)
119 1x4u_A Zinc finger, FYVE domai 83.4 0.89 3E-05 24.5 2.4 36 7-42 12-47 (84)
120 2o35_A Hypothetical protein DU 83.3 0.46 1.6E-05 26.9 1.3 12 35-46 43-54 (105)
121 1weu_A Inhibitor of growth fam 83.3 0.48 1.7E-05 26.3 1.3 45 7-56 34-85 (91)
122 3fyb_A Protein of unknown func 83.1 0.47 1.6E-05 26.8 1.3 12 35-46 42-53 (104)
123 2l43_A N-teminal domain from h 83.0 1.1 3.7E-05 24.5 2.7 50 7-56 23-75 (88)
124 1wew_A DNA-binding family prot 82.9 1.6 5.4E-05 23.2 3.3 48 7-56 14-72 (78)
125 3mjh_B Early endosome antigen 82.0 0.46 1.6E-05 21.6 0.8 16 7-22 3-18 (34)
126 1g47_A Pinch protein; LIM doma 81.7 1 3.6E-05 23.2 2.3 46 4-59 6-51 (77)
127 3zyq_A Hepatocyte growth facto 81.4 1.1 3.9E-05 28.4 2.7 36 7-42 162-197 (226)
128 2kwj_A Zinc finger protein DPF 81.0 1.2 4.2E-05 25.3 2.6 34 10-43 2-41 (114)
129 2ro1_A Transcription intermedi 80.7 0.25 8.7E-06 30.7 -0.5 44 9-56 2-49 (189)
130 1wev_A Riken cDNA 1110020M19; 79.7 0.23 7.8E-06 27.3 -0.9 50 8-57 15-73 (88)
131 3i2d_A E3 SUMO-protein ligase 79.4 2.4 8.3E-05 29.2 4.0 49 8-59 248-300 (371)
132 4fo9_A E3 SUMO-protein ligase 79.3 2.4 8.4E-05 29.1 4.0 48 9-59 215-266 (360)
133 3asl_A E3 ubiquitin-protein li 78.6 0.3 1E-05 25.7 -0.6 44 11-55 20-68 (70)
134 2ri7_A Nucleosome-remodeling f 78.3 1.6 5.6E-05 26.3 2.7 50 6-56 5-59 (174)
135 1z60_A TFIIH basal transcripti 77.5 1.7 5.7E-05 22.2 2.1 43 10-53 16-58 (59)
136 2jne_A Hypothetical protein YF 77.0 0.86 3E-05 25.7 1.0 43 9-60 32-74 (101)
137 1wee_A PHD finger family prote 76.9 1.2 4.3E-05 23.1 1.6 49 7-56 14-66 (72)
138 1x4i_A Inhibitor of growth pro 76.3 1.7 5.7E-05 22.7 2.0 48 7-57 4-56 (70)
139 2g6q_A Inhibitor of growth pro 76.2 0.97 3.3E-05 23.1 1.0 45 6-55 8-59 (62)
140 2e6s_A E3 ubiquitin-protein li 76.2 0.37 1.3E-05 25.8 -0.6 44 11-55 28-76 (77)
141 2jrp_A Putative cytoplasmic pr 74.6 1.4 4.8E-05 23.9 1.4 41 10-59 3-43 (81)
142 3a1b_A DNA (cytosine-5)-methyl 74.2 4.3 0.00015 24.7 3.7 37 6-46 76-114 (159)
143 1zbd_B Rabphilin-3A; G protein 72.5 2.1 7.1E-05 25.3 1.9 50 7-56 53-107 (134)
144 2cu8_A Cysteine-rich protein 2 71.0 2.1 7.2E-05 22.0 1.6 43 6-59 6-48 (76)
145 1x62_A C-terminal LIM domain p 69.6 1.9 6.6E-05 22.4 1.3 41 6-58 12-52 (79)
146 1x61_A Thyroid receptor intera 68.8 3 0.0001 21.1 1.9 41 8-58 4-44 (72)
147 1wyh_A SLIM 2, skeletal muscle 68.5 3.2 0.00011 20.9 2.0 41 8-58 4-44 (72)
148 1wd2_A Ariadne-1 protein homol 68.1 0.27 9.1E-06 25.2 -2.3 36 10-45 7-46 (60)
149 3o70_A PHD finger protein 13; 67.2 2.8 9.4E-05 21.7 1.5 47 7-55 17-66 (68)
150 3ask_A E3 ubiquitin-protein li 67.1 1.1 3.6E-05 28.9 -0.2 44 11-55 176-224 (226)
151 2pv0_B DNA (cytosine-5)-methyl 66.9 6.1 0.00021 27.4 3.5 36 6-45 90-127 (386)
152 3f6q_B LIM and senescent cell 66.7 4.3 0.00015 20.2 2.3 43 7-59 9-51 (72)
153 1x4k_A Skeletal muscle LIM-pro 66.3 2.7 9.2E-05 21.2 1.4 40 9-58 5-44 (72)
154 1x4l_A Skeletal muscle LIM-pro 65.2 3.9 0.00013 20.7 1.9 41 8-58 4-46 (72)
155 1zfo_A LAsp-1; LIM domain, zin 64.9 1.8 6.2E-05 18.8 0.4 28 10-40 4-31 (31)
156 1iml_A CRIP, cysteine rich int 63.7 1.9 6.6E-05 22.2 0.5 37 11-58 2-38 (76)
157 2d8v_A Zinc finger FYVE domain 63.4 5.2 0.00018 20.9 2.1 34 5-43 4-38 (67)
158 1x63_A Skeletal muscle LIM-pro 62.9 3.8 0.00013 21.2 1.6 41 9-59 15-55 (82)
159 2zet_C Melanophilin; complex, 62.7 5.2 0.00018 24.1 2.3 47 8-56 67-117 (153)
160 2rsd_A E3 SUMO-protein ligase 62.7 3.3 0.00011 21.2 1.3 49 6-55 7-64 (68)
161 3mpx_A FYVE, rhogef and PH dom 61.5 1.7 5.8E-05 29.7 0.0 49 8-56 374-429 (434)
162 2gmg_A Hypothetical protein PF 60.0 1.3 4.5E-05 25.2 -0.6 25 30-59 72-96 (105)
163 3o7a_A PHD finger protein 13 v 59.1 1.4 4.9E-05 21.4 -0.5 41 14-55 8-51 (52)
164 2dj7_A Actin-binding LIM prote 57.6 4.2 0.00015 21.2 1.2 41 7-58 13-53 (80)
165 1x64_A Alpha-actinin-2 associa 57.2 4.9 0.00017 21.3 1.4 40 7-58 23-62 (89)
166 2jmo_A Parkin; IBR, E3 ligase, 57.2 0.57 2E-05 25.1 -2.4 14 30-43 55-68 (80)
167 1x68_A FHL5 protein; four-and- 57.0 5.4 0.00019 20.4 1.6 40 9-58 5-46 (76)
168 1nyp_A Pinch protein; LIM doma 56.5 4.5 0.00015 20.0 1.1 38 9-58 5-42 (66)
169 2d8z_A Four and A half LIM dom 54.8 5.6 0.00019 19.9 1.3 38 9-58 5-42 (70)
170 2ct7_A Ring finger protein 31; 54.8 0.79 2.7E-05 24.8 -2.1 41 12-52 28-72 (86)
171 2cor_A Pinch protein; LIM doma 54.7 9.9 0.00034 19.6 2.4 41 7-59 13-53 (79)
172 2jvx_A NF-kappa-B essential mo 54.0 3.3 0.00011 17.9 0.3 12 48-59 4-15 (28)
173 3kqi_A GRC5, PHD finger protei 53.9 17 0.00057 18.8 3.2 48 8-56 9-61 (75)
174 1wig_A KIAA1808 protein; LIM d 53.7 7.4 0.00025 19.8 1.7 38 9-58 5-42 (73)
175 2jmi_A Protein YNG1, ING1 homo 53.4 5 0.00017 22.0 1.0 46 5-55 22-75 (90)
176 2co8_A NEDD9 interacting prote 53.1 6.9 0.00024 20.4 1.6 42 7-59 13-54 (82)
177 2dar_A PDZ and LIM domain prot 52.3 4.1 0.00014 21.7 0.6 39 8-58 24-62 (90)
178 2d8y_A Eplin protein; LIM doma 52.1 10 0.00035 20.0 2.2 41 8-59 14-54 (91)
179 2d8x_A Protein pinch; LIM doma 51.1 3.6 0.00012 20.7 0.2 40 8-59 4-43 (70)
180 3kv5_D JMJC domain-containing 49.4 15 0.00051 26.1 3.2 49 7-56 35-88 (488)
181 2cur_A Skeletal muscle LIM-pro 49.0 6.1 0.00021 19.7 0.9 39 8-58 4-42 (69)
182 2a20_A Regulating synaptic mem 48.1 13 0.00045 18.9 2.0 38 4-42 4-42 (62)
183 2cup_A Skeletal muscle LIM-pro 47.5 10 0.00034 20.3 1.7 25 32-58 53-77 (101)
184 2l4z_A DNA endonuclease RBBP8, 46.4 11 0.00039 21.3 1.9 39 9-58 61-99 (123)
185 2ehe_A Four and A half LIM dom 45.9 7.7 0.00026 20.0 1.0 39 10-58 16-54 (82)
186 2lq6_A Bromodomain-containing 45.4 13 0.00043 20.1 1.9 37 5-42 13-50 (87)
187 2l3k_A Rhombotin-2, linker, LI 45.1 6.2 0.00021 22.3 0.6 28 11-40 10-37 (123)
188 2kpi_A Uncharacterized protein 44.5 11 0.00036 18.8 1.4 13 8-20 9-21 (56)
189 2egq_A FHL1 protein; LIM domai 44.1 8.8 0.0003 19.5 1.1 40 9-58 15-57 (77)
190 2xjy_A Rhombotin-2; oncoprotei 42.8 20 0.00069 20.1 2.6 50 7-58 27-77 (131)
191 3vhs_A ATPase wrnip1; zinc fin 41.0 12 0.00039 15.8 1.0 12 49-60 8-19 (29)
192 1a7i_A QCRP2 (LIM1); LIM domai 40.8 4.7 0.00016 20.9 -0.4 40 8-58 6-45 (81)
193 2pk7_A Uncharacterized protein 37.7 6.5 0.00022 20.5 -0.1 17 43-59 4-20 (69)
194 2cuq_A Four and A half LIM dom 37.2 13 0.00043 19.0 1.0 37 10-58 16-52 (80)
195 3kv4_A PHD finger protein 8; e 37.1 6.1 0.00021 27.8 -0.3 45 13-57 8-57 (447)
196 2iyb_E Testin, TESS, TES; LIM 36.5 14 0.00047 18.2 1.1 39 10-58 3-43 (65)
197 2dlo_A Thyroid receptor-intera 35.5 6 0.00021 20.4 -0.5 39 8-58 14-52 (81)
198 1v6g_A Actin binding LIM prote 35.2 6.3 0.00022 20.3 -0.4 37 10-58 16-52 (81)
199 2jny_A Uncharacterized BCR; st 34.8 5.9 0.0002 20.5 -0.5 18 42-59 5-22 (67)
200 1m3v_A FLIN4, fusion of the LI 33.9 32 0.0011 19.2 2.5 49 9-59 32-81 (122)
201 6rxn_A Rubredoxin; electron tr 33.8 13 0.00045 17.7 0.7 14 5-18 26-39 (46)
202 1x3h_A Leupaxin; paxillin fami 31.9 7.3 0.00025 20.0 -0.5 38 10-59 16-53 (80)
203 1e8j_A Rubredoxin; iron-sulfur 31.1 19 0.00066 17.5 1.0 15 4-18 31-45 (52)
204 1l8d_A DNA double-strand break 28.0 15 0.00052 20.3 0.4 14 47-60 47-60 (112)
205 1rut_X Flinc4, fusion protein 27.5 40 0.0014 20.3 2.3 27 32-58 54-80 (188)
206 1j2o_A FLIN2, fusion of rhombo 27.4 23 0.00077 19.6 1.0 37 7-45 28-65 (114)
207 4rxn_A Rubredoxin; electron tr 26.5 21 0.00071 17.6 0.7 15 4-18 31-45 (54)
208 2kn9_A Rubredoxin; metalloprot 26.1 25 0.00086 18.9 1.0 15 4-18 55-69 (81)
209 1yk4_A Rubredoxin, RD; electro 25.6 22 0.00076 17.3 0.7 15 4-18 30-44 (52)
210 4bbq_A Lysine-specific demethy 25.1 30 0.001 19.1 1.3 44 12-55 62-113 (117)
211 2v3b_B Rubredoxin 2, rubredoxi 25.0 22 0.00076 17.5 0.6 14 5-18 32-45 (55)
212 2xqn_T Testin, TESS; metal-bin 25.0 66 0.0023 17.7 2.8 48 7-59 28-75 (126)
213 2jr6_A UPF0434 protein NMA0874 23.9 6.2 0.00021 20.5 -1.7 14 46-59 7-20 (68)
214 1dx8_A Rubredoxin; electron tr 22.4 27 0.00093 18.1 0.7 13 5-17 36-48 (70)
215 1loi_A Cyclic 3',5'-AMP specif 22.0 4.2 0.00014 16.7 -2.0 12 34-45 6-17 (26)
216 2hf1_A Tetraacyldisaccharide-1 21.5 6.3 0.00021 20.5 -2.0 12 48-59 9-20 (68)
217 1b8t_A Protein (CRP1); LIM dom 21.3 25 0.00086 21.2 0.5 37 11-58 117-153 (192)
218 2vrw_B P95VAV, VAV1, proto-onc 20.6 76 0.0026 21.3 2.8 36 7-42 355-391 (406)
219 2ffw_A Midline-1; B-BOX, ring 20.3 1E+02 0.0035 15.8 3.5 35 7-42 28-62 (78)
220 2js4_A UPF0434 protein BB2007; 20.2 7.1 0.00024 20.4 -1.9 11 48-58 9-19 (70)
No 1
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.77 E-value=3.5e-19 Score=98.17 Aligned_cols=58 Identities=31% Similarity=0.737 Sum_probs=50.7
Q ss_pred CCCCCcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCccccccccchhh
Q 036506 3 AAKCPYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVAIVI 61 (86)
Q Consensus 3 ~~~~~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 61 (86)
.+....+..|+||++.|..+..+..++ |+|.||..||.+|++.+..||+||..+....
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (78)
T 2ect_A 9 EEHVGSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQN 66 (78)
T ss_dssp CTTSSSSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCCCCSC
T ss_pred cccCCCCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCccCCcc
Confidence 345567889999999999888777887 9999999999999999999999999987643
No 2
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.75 E-value=1.1e-18 Score=94.16 Aligned_cols=57 Identities=35% Similarity=0.920 Sum_probs=49.4
Q ss_pred CCCCCcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCccccccccchh
Q 036506 3 AAKCPYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVAIV 60 (86)
Q Consensus 3 ~~~~~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 60 (86)
.++...+..|+||++.|..+..++.++ |||.||..||.+|+..+..||+||..+...
T Consensus 8 ~~~~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 8 GTEEDTEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp CCSTTCCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred cCcCCCCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 344567789999999998877778888 999999999999999999999999987643
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.74 E-value=8.2e-19 Score=90.79 Aligned_cols=52 Identities=50% Similarity=1.063 Sum_probs=46.3
Q ss_pred CcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCccccccccc
Q 036506 7 PYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVA 58 (86)
Q Consensus 7 ~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 58 (86)
.++.+|+||++.+..++.+..++.|||.||..||.+|++++.+||+||..+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 5678999999999987777777669999999999999999999999998764
No 4
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=7.1e-19 Score=96.41 Aligned_cols=53 Identities=36% Similarity=0.903 Sum_probs=48.1
Q ss_pred CCcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCccccccccch
Q 036506 6 CPYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVAI 59 (86)
Q Consensus 6 ~~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 59 (86)
..++..|+||++.|..++.++.++ |+|.||..||.+|++.+..||+||+.+..
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 456789999999999988888898 99999999999999999999999998764
No 5
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.4e-18 Score=94.80 Aligned_cols=55 Identities=33% Similarity=0.821 Sum_probs=49.2
Q ss_pred CCCCcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCccccccccch
Q 036506 4 AKCPYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVAI 59 (86)
Q Consensus 4 ~~~~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 59 (86)
.+...+..|+||++.|..+..+..++ |+|.||..||.+|++.+..||+||..+..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 10 KELNLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp CCCCCSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred ccCCCCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 45567889999999999888888888 99999999999999999999999998764
No 6
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.73 E-value=2.2e-18 Score=97.84 Aligned_cols=54 Identities=31% Similarity=0.783 Sum_probs=48.1
Q ss_pred CCCcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCccccccccch
Q 036506 5 KCPYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVAI 59 (86)
Q Consensus 5 ~~~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 59 (86)
....+..|+||++.|..++.+..++ |||.||..||.+|++.+.+||+||..+..
T Consensus 36 ~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 36 AVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred ccCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 3456788999999999888888898 99999999999999999999999998754
No 7
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.71 E-value=1e-17 Score=98.08 Aligned_cols=60 Identities=22% Similarity=0.444 Sum_probs=46.5
Q ss_pred CcccccccccccccCCC---------------ceeEcCCCCCcchHHhHHHHHh-----cCCCccccccccchhhhhhhc
Q 036506 7 PYYCYCTVCLDGISDGQ---------------KFRRLPECKHCFHVECIDAWFQ-----SRSTCPLCRIEVAIVIARQRR 66 (86)
Q Consensus 7 ~~~~~C~ICl~~~~~~~---------------~~~~~~~C~H~fh~~Ci~~wl~-----~~~~CP~Cr~~~~~~~~~~~~ 66 (86)
+.+.+|+||++.|..+. .+..++ |+|.||..||.+|+. .+.+||+||..+....+.++.
T Consensus 23 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g~qp~ 101 (114)
T 1v87_A 23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGTQPW 101 (114)
T ss_dssp CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSSSCTT
T ss_pred CCCCcCccCChhhcCcccccccccccccCcccceecCC-CCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCCCCCC
Confidence 45679999999997643 233565 999999999999994 467899999998776555544
Q ss_pred c
Q 036506 67 N 67 (86)
Q Consensus 67 ~ 67 (86)
+
T Consensus 102 g 102 (114)
T 1v87_A 102 G 102 (114)
T ss_dssp S
T ss_pred C
Confidence 3
No 8
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=1.1e-17 Score=93.25 Aligned_cols=53 Identities=26% Similarity=0.664 Sum_probs=43.3
Q ss_pred CcccccccccccccC-----------CCceeEcCCCCCcchHHhHHHHHhcCCCccccccccch
Q 036506 7 PYYCYCTVCLDGISD-----------GQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVAI 59 (86)
Q Consensus 7 ~~~~~C~ICl~~~~~-----------~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 59 (86)
.++..|+||++.|.. ++.++.++.|+|.||..||.+|+.++++||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 467789999999864 23344555599999999999999999999999998754
No 9
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=2.4e-17 Score=88.47 Aligned_cols=55 Identities=25% Similarity=0.632 Sum_probs=45.7
Q ss_pred CCCCCcccccccccccccCC----CceeEcCCCCCcchHHhHHHHHhcCCCccccccccc
Q 036506 3 AAKCPYYCYCTVCLDGISDG----QKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVA 58 (86)
Q Consensus 3 ~~~~~~~~~C~ICl~~~~~~----~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 58 (86)
.+...+...|+||++.+.++ ..+..++ |||.||..||.+|+..+..||+||..+.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 9 GLRPSGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp CCCTTCCCCCTTTCCCHHHHTTTTCCEEECS-SSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred ccCCCCCCCCcccCccccccccccCCeEeCC-CCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 34557788999999998764 2335666 9999999999999999999999999875
No 10
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.67 E-value=2.1e-17 Score=89.27 Aligned_cols=55 Identities=25% Similarity=0.615 Sum_probs=45.7
Q ss_pred CCCCcccccccccccccCC----CceeEcCCCCCcchHHhHHHHHhcCCCccccccccch
Q 036506 4 AKCPYYCYCTVCLDGISDG----QKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVAI 59 (86)
Q Consensus 4 ~~~~~~~~C~ICl~~~~~~----~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 59 (86)
....++..|+||++.+.++ ..+..++ |||.||..||.+|++++..||+||..+..
T Consensus 5 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 5 LRPSGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH 63 (71)
T ss_dssp -CCTTCCBCTTTCCBHHHHHTTTCCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred CCCCCCCCCcccChhhhccccccCCeEeCC-CCChHhHHHHHHHHHcCCCCCCCCCccCh
Confidence 3456788999999998764 3445666 99999999999999999999999998764
No 11
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.67 E-value=3.8e-17 Score=84.34 Aligned_cols=51 Identities=27% Similarity=0.647 Sum_probs=43.1
Q ss_pred CcccccccccccccCCC-ceeEcCCCCCcchHHhHHHHHhcCCCccccccccc
Q 036506 7 PYYCYCTVCLDGISDGQ-KFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVA 58 (86)
Q Consensus 7 ~~~~~C~ICl~~~~~~~-~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 58 (86)
..+.+|+||++.+.+++ .+..++ |+|.||..||.+|++.+..||+||..+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECT-TSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecC-CCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 45788999999986543 455666 9999999999999999999999998764
No 12
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=1e-16 Score=87.10 Aligned_cols=55 Identities=29% Similarity=0.625 Sum_probs=46.0
Q ss_pred CCCCCcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCccccccccchh
Q 036506 3 AAKCPYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVAIV 60 (86)
Q Consensus 3 ~~~~~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 60 (86)
.++..++..|+||++.+.++ +.+..|||.||..||.+|++.+..||+||..+...
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 9 LSELTPYILCSICKGYLIDA---TTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp CCCCCGGGSCTTTSSCCSSC---EECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred HhhcCCCCCCCCCChHHHCc---CEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcc
Confidence 45567889999999999876 34423999999999999999999999999988643
No 13
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=5.7e-17 Score=87.93 Aligned_cols=53 Identities=28% Similarity=0.525 Sum_probs=45.3
Q ss_pred CCCcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCccccccccchhh
Q 036506 5 KCPYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVAIVI 61 (86)
Q Consensus 5 ~~~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 61 (86)
...++..|+||++.+.++ +.++ |||.||..||.+|+..+..||+||..+....
T Consensus 11 ~~~~~~~C~IC~~~~~~~---~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 63 (71)
T 2d8t_A 11 PSLTVPECAICLQTCVHP---VSLP-CKHVFCYLCVKGASWLGKRCALCRQEIPEDF 63 (71)
T ss_dssp SSSSCCBCSSSSSBCSSE---EEET-TTEEEEHHHHHHCTTCSSBCSSSCCBCCHHH
T ss_pred cCCCCCCCccCCcccCCC---EEcc-CCCHHHHHHHHHHHHCCCcCcCcCchhCHhh
Confidence 346678999999998765 5666 9999999999999999999999999887543
No 14
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.63 E-value=2.4e-16 Score=86.18 Aligned_cols=55 Identities=25% Similarity=0.541 Sum_probs=45.3
Q ss_pred CCCCCCcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcC--CCccccccccch
Q 036506 2 TAAKCPYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSR--STCPLCRIEVAI 59 (86)
Q Consensus 2 t~~~~~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~--~~CP~Cr~~~~~ 59 (86)
..++.+++..|+||++.|.++ +.++.|||.||..||.+|+..+ ..||+||..+..
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 8 EDDPIPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp CCCCSCGGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred ccccCCCCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 345667889999999999877 4454599999999999999865 689999997543
No 15
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.63 E-value=8.7e-17 Score=85.08 Aligned_cols=51 Identities=27% Similarity=0.694 Sum_probs=43.3
Q ss_pred cccccccccccccCC----CceeEcCCCCCcchHHhHHHHHhcCCCccccccccch
Q 036506 8 YYCYCTVCLDGISDG----QKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVAI 59 (86)
Q Consensus 8 ~~~~C~ICl~~~~~~----~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 59 (86)
++.+|+||++.+.++ +.+..++ |||.||..|+.+|++++..||+||..+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEET-TSCEEEHHHHHHHHHHCSBCTTTCCBCTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCC-CCCchhHHHHHHHHHcCCCCCCCCccCCc
Confidence 467899999998754 3345666 99999999999999999999999998764
No 16
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.63 E-value=1.5e-16 Score=85.30 Aligned_cols=50 Identities=36% Similarity=0.829 Sum_probs=43.1
Q ss_pred CcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCccccccccch
Q 036506 7 PYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVAI 59 (86)
Q Consensus 7 ~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 59 (86)
.++..|+||++.+.++ +..++ |||.||..|+.+|++++..||+||..+..
T Consensus 3 ~~~~~C~IC~~~~~~~--~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 3 TVAERCPICLEDPSNY--SMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCCSSCCSCCCSC--EEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCCeeCCccccCC--cEecC-CCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 4567899999998754 35676 99999999999999999999999998864
No 17
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.62 E-value=3.7e-16 Score=91.13 Aligned_cols=50 Identities=32% Similarity=0.676 Sum_probs=42.3
Q ss_pred cccccccccccccCCC---------------ceeEcCCCCCcchHHhHHHHHhcCCCccccccccc
Q 036506 8 YYCYCTVCLDGISDGQ---------------KFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVA 58 (86)
Q Consensus 8 ~~~~C~ICl~~~~~~~---------------~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 58 (86)
++..|+||++.|..+. .++.++ |+|.||..||.+||..+.+||+||+.+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecc-cCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 5678999999987541 245566 9999999999999999999999999864
No 18
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.1e-16 Score=86.33 Aligned_cols=52 Identities=35% Similarity=0.861 Sum_probs=45.0
Q ss_pred CCCCCcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCccccccccch
Q 036506 3 AAKCPYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVAI 59 (86)
Q Consensus 3 ~~~~~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 59 (86)
.++..++..|+||++.+.+ +.++ |||.||..||.+|+.++..||+||..+..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~----~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 9 VKQLTDEEECCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTG 60 (70)
T ss_dssp CCCCCCCCCCSSSCCSCCS----EEET-TTEEECHHHHHHSSCCCSSCHHHHHCTTC
T ss_pred hhcCCCCCCCeeCCcCccC----cccC-CCCcccHHHHHHHHHCcCcCCCcCCcccC
Confidence 3455778999999999876 4677 99999999999999999999999998764
No 19
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=7.4e-16 Score=86.13 Aligned_cols=57 Identities=21% Similarity=0.522 Sum_probs=46.8
Q ss_pred CCCCCcccccccccccccCCCc-eeEcCCCCCcchHHhHHHHHhcC---CCccccccccchh
Q 036506 3 AAKCPYYCYCTVCLDGISDGQK-FRRLPECKHCFHVECIDAWFQSR---STCPLCRIEVAIV 60 (86)
Q Consensus 3 ~~~~~~~~~C~ICl~~~~~~~~-~~~~~~C~H~fh~~Ci~~wl~~~---~~CP~Cr~~~~~~ 60 (86)
.++..+...|+||++.|.+.+. .+.++ |||.||..||.+|+..+ ..||+||..+...
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 9 LDALREVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CCCCCSCCBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred hhhccCCCCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 3455778899999999987543 45666 99999999999999875 6899999987643
No 20
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=5.2e-16 Score=85.96 Aligned_cols=51 Identities=18% Similarity=0.458 Sum_probs=43.8
Q ss_pred CCCCcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCccccccccc
Q 036506 4 AKCPYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVA 58 (86)
Q Consensus 4 ~~~~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 58 (86)
++......|+||++.+.++ ++++ |||.||..||.+|+.....||+||..+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 10 EEEEIPFRCFICRQAFQNP---VVTK-CRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp SCCCCCSBCSSSCSBCCSE---EECT-TSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred ccCCCCCCCcCCCchhcCe---eEcc-CCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 3446678999999999775 4566 9999999999999999999999999875
No 21
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=9.8e-16 Score=81.87 Aligned_cols=52 Identities=19% Similarity=0.438 Sum_probs=43.4
Q ss_pred CCCCcccccccccccccCCCceeEcCCCCCcchHHhHHHHHh-cCCCccccccccch
Q 036506 4 AKCPYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQ-SRSTCPLCRIEVAI 59 (86)
Q Consensus 4 ~~~~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~-~~~~CP~Cr~~~~~ 59 (86)
+...++..|+||++.+.++ +.++ |||.||..||.+|+. ....||+||..+..
T Consensus 10 ~~~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 10 KTVEDKYKCEKCHLVLCSP---KQTE-CGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CSCCCCEECTTTCCEESSC---CCCS-SSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred hcCCcCCCCCCCChHhcCe---eECC-CCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 3457789999999999877 3455 999999999999995 56789999998764
No 22
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=9.6e-16 Score=83.12 Aligned_cols=52 Identities=29% Similarity=0.595 Sum_probs=43.4
Q ss_pred CCCCcccccccccccccCCCceeEcCCCCCcchHHhHHHHHh---cCCCccccccccch
Q 036506 4 AKCPYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQ---SRSTCPLCRIEVAI 59 (86)
Q Consensus 4 ~~~~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~---~~~~CP~Cr~~~~~ 59 (86)
++..++..|+||++.+.++ +.++ |||.||..||..|+. ....||+||..+..
T Consensus 15 ~~~~~~~~C~IC~~~~~~~---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 15 NKLQEEVICPICLDILQKP---VTID-CGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCCCBCTTTCSBCSSE---EECT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred HhCccCCEeccCCcccCCe---EEcC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 4457788999999998865 4566 999999999999997 35689999998754
No 23
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.58 E-value=5.8e-16 Score=93.59 Aligned_cols=48 Identities=27% Similarity=0.781 Sum_probs=42.4
Q ss_pred cccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCccccccccch
Q 036506 8 YYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVAI 59 (86)
Q Consensus 8 ~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 59 (86)
++..|+||++.|.++ ++++ |||.||..||..|+..+..||+||..+..
T Consensus 52 ~~~~C~iC~~~~~~~---~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 52 NELQCIICSEYFIEA---VTLN-CAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp HHSBCTTTCSBCSSE---EEET-TSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred ccCCCcccCcccCCc---eECC-CCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 456899999999866 5677 99999999999999999999999998754
No 24
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.57 E-value=1.5e-15 Score=83.41 Aligned_cols=52 Identities=19% Similarity=0.478 Sum_probs=45.3
Q ss_pred CCCCcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhc-CCCccccccccch
Q 036506 4 AKCPYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQS-RSTCPLCRIEVAI 59 (86)
Q Consensus 4 ~~~~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 59 (86)
.+.+++..|+||++.|.++ ++++ |||.||..||.+|+.. +..||+||..+..
T Consensus 3 ~~~~~~~~C~IC~~~~~~P---v~~~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 3 PEFPEYFRCPISLELMKDP---VIVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp CCCSSSSSCTTTSCCCSSE---EEET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred cCCcccCCCCCccccccCC---EEcC-CCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 4568899999999999876 4566 9999999999999987 7789999998754
No 25
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=1.4e-15 Score=84.61 Aligned_cols=53 Identities=26% Similarity=0.642 Sum_probs=43.8
Q ss_pred CCcccccccccccccCCCceeEcCCCC-----CcchHHhHHHHHhcC--CCccccccccchh
Q 036506 6 CPYYCYCTVCLDGISDGQKFRRLPECK-----HCFHVECIDAWFQSR--STCPLCRIEVAIV 60 (86)
Q Consensus 6 ~~~~~~C~ICl~~~~~~~~~~~~~~C~-----H~fh~~Ci~~wl~~~--~~CP~Cr~~~~~~ 60 (86)
..++..|.||++++..++.+ ++| |+ |.||..||.+|+..+ .+||+||..+...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l-~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPL-ITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCE-ECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCCCeEcCccccCCCee-Eec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 35677999999998766654 577 86 999999999999875 4899999988654
No 26
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.56 E-value=3.9e-15 Score=82.42 Aligned_cols=52 Identities=25% Similarity=0.662 Sum_probs=44.4
Q ss_pred CCCCcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhc------CCCccccccccch
Q 036506 4 AKCPYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQS------RSTCPLCRIEVAI 59 (86)
Q Consensus 4 ~~~~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~------~~~CP~Cr~~~~~ 59 (86)
++..++..|+||++.+.++ ..++ |||.||..||..|+.. ...||+||..+..
T Consensus 14 ~~~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 14 EMIKEEVTCPICLELLKEP---VSAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CCCCTTTSCTTTCSCCSSC---EECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred HhCccCCCCcCCChhhCcc---eeCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 4456788999999999877 4666 9999999999999987 6689999998764
No 27
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.56 E-value=9.5e-16 Score=84.22 Aligned_cols=52 Identities=25% Similarity=0.627 Sum_probs=44.5
Q ss_pred CCCCcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhc-------CCCccccccccch
Q 036506 4 AKCPYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQS-------RSTCPLCRIEVAI 59 (86)
Q Consensus 4 ~~~~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~-------~~~CP~Cr~~~~~ 59 (86)
++..++..|+||++.|.++ +.++ |||.||..||.+|+.. ...||+||..+..
T Consensus 7 ~~~~~~~~C~IC~~~~~~p---~~l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 7 GNVQEEVTCPICLELLTEP---LSLD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCCCCEETTTTEECSSC---CCCS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred hhcccCCCCcCCCcccCCe---eECC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 4567889999999999876 3566 9999999999999986 5689999998865
No 28
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.56 E-value=1.7e-15 Score=87.12 Aligned_cols=50 Identities=24% Similarity=0.707 Sum_probs=42.8
Q ss_pred CcccccccccccccCCCceeE-cCCCCCcchHHhHHHHHhcC-CCccccccccchh
Q 036506 7 PYYCYCTVCLDGISDGQKFRR-LPECKHCFHVECIDAWFQSR-STCPLCRIEVAIV 60 (86)
Q Consensus 7 ~~~~~C~ICl~~~~~~~~~~~-~~~C~H~fh~~Ci~~wl~~~-~~CP~Cr~~~~~~ 60 (86)
.++..|+||++.|.++ +. ++ |||.||..||.+|+..+ ..||+||..+...
T Consensus 20 ~~~~~C~IC~~~~~~p---~~~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (100)
T 3lrq_A 20 AEVFRCFICMEKLRDA---RLCPH-CSKLCCFSCIRRWLTEQRAQCPHCRAPLQLR 71 (100)
T ss_dssp HHHTBCTTTCSBCSSE---EECTT-TCCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCCCCccCCccccCc---cccCC-CCChhhHHHHHHHHHHCcCCCCCCCCcCCHH
Confidence 4678999999999865 34 55 99999999999999987 6999999988643
No 29
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=5.9e-15 Score=78.09 Aligned_cols=46 Identities=30% Similarity=0.650 Sum_probs=38.9
Q ss_pred CCCCcccccccccccccCCCceeEcCCCCCcchHHhHHHHHh---cCCCcccc
Q 036506 4 AKCPYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQ---SRSTCPLC 53 (86)
Q Consensus 4 ~~~~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~---~~~~CP~C 53 (86)
++..++..|+||++.+.++ +.++ |||.||..||.+|++ ....||+|
T Consensus 15 ~~~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 15 NKLQEEVICPICLDILQKP---VTID-CGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCBCTTTCSBCSSC---EECT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HhCccCCCCCcCCchhCCe---EEeC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 3457789999999999876 4566 999999999999998 35589987
No 30
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.55 E-value=2.1e-15 Score=89.49 Aligned_cols=54 Identities=26% Similarity=0.614 Sum_probs=45.5
Q ss_pred CCcccccccccccccCC----CceeEcCCCCCcchHHhHHHHHhcCCCccccccccchh
Q 036506 6 CPYYCYCTVCLDGISDG----QKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVAIV 60 (86)
Q Consensus 6 ~~~~~~C~ICl~~~~~~----~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 60 (86)
++++..|+||++.|.++ +.++.++ |||.||..||.+|++.+.+||+||..+...
T Consensus 4 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (133)
T 4ap4_A 4 GSGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 61 (133)
T ss_dssp -CCSCBCTTTCCBHHHHHHTTCCEEEET-TCCEEEHHHHHHHHTTCSBCTTTCCBCTTT
T ss_pred CCCCCCCcccChhhhCccccccCeEecC-CCChhhHHHHHHHHHhCCCCCCCCCcCccc
Confidence 46788999999998764 3446676 999999999999999999999999988654
No 31
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.54 E-value=6.4e-15 Score=83.16 Aligned_cols=52 Identities=27% Similarity=0.583 Sum_probs=43.4
Q ss_pred CCCCCcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcC--CCcccccccc
Q 036506 3 AAKCPYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSR--STCPLCRIEV 57 (86)
Q Consensus 3 ~~~~~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~--~~CP~Cr~~~ 57 (86)
.++.+++..|+||++.|.++ +.++.|||.||..||..|+..+ ..||+||..+
T Consensus 7 ~~~~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 7 DDPIPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp CCCCCTTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred cccCCcCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 34557889999999999877 4554499999999999999753 5899999986
No 32
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=6e-15 Score=81.67 Aligned_cols=52 Identities=29% Similarity=0.659 Sum_probs=44.3
Q ss_pred CCCCcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhc------CCCccccccccch
Q 036506 4 AKCPYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQS------RSTCPLCRIEVAI 59 (86)
Q Consensus 4 ~~~~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~------~~~CP~Cr~~~~~ 59 (86)
++..+...|+||++.+.++ ..++ |||.||..|+..|+.. ...||+||..+..
T Consensus 14 ~~~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 14 VNVKEEVTCPICLELLTQP---LSLD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCCCCTTTCSCCSSC---BCCS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred HHccCCCCCCCCCcccCCc---eeCC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 3457789999999999876 3556 9999999999999987 6789999998864
No 33
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.52 E-value=7e-15 Score=84.12 Aligned_cols=50 Identities=22% Similarity=0.638 Sum_probs=42.6
Q ss_pred CcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCccccccccch
Q 036506 7 PYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVAI 59 (86)
Q Consensus 7 ~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 59 (86)
.++..|+||++.|.++ +.++.|||.||..||..|+..+..||+||..+..
T Consensus 20 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 20 DDLLRCGICFEYFNIA---MIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHHTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCCcccCChhhCCc---CEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 4568999999999875 3442399999999999999999999999998864
No 34
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.52 E-value=1.1e-15 Score=90.52 Aligned_cols=50 Identities=32% Similarity=0.676 Sum_probs=1.0
Q ss_pred cccccccccccccCCC---------------ceeEcCCCCCcchHHhHHHHHhcCCCccccccccc
Q 036506 8 YYCYCTVCLDGISDGQ---------------KFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVA 58 (86)
Q Consensus 8 ~~~~C~ICl~~~~~~~---------------~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 58 (86)
.+..|+||++.|..+. .+..++ |+|.||..||.+||..+.+||+||+.+.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~-C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CC----------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCC-cCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 4578999999997531 122344 9999999999999999999999999864
No 35
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=1e-14 Score=75.73 Aligned_cols=46 Identities=28% Similarity=0.787 Sum_probs=38.3
Q ss_pred CCCCcccccccccccccCCCceeEcCCCCCcchHHhHHHHHh---cCCCcccc
Q 036506 4 AKCPYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQ---SRSTCPLC 53 (86)
Q Consensus 4 ~~~~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~---~~~~CP~C 53 (86)
++..++..|+||++.+.++ +.++ |||.||..||.+|+. ....||+|
T Consensus 10 ~~~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 10 ENLQVEASCSVCLEYLKEP---VIIE-CGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCSCCCCBCSSSCCBCSSC---CCCS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred hccccCCCCccCCcccCcc---EeCC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 4456788999999999887 3566 999999999999954 46689987
No 36
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.51 E-value=9.2e-15 Score=84.86 Aligned_cols=50 Identities=24% Similarity=0.604 Sum_probs=43.6
Q ss_pred CCcccccccccccccCCCceeEc-CCCCCcchHHhHHHHHhcCCCccccccccch
Q 036506 6 CPYYCYCTVCLDGISDGQKFRRL-PECKHCFHVECIDAWFQSRSTCPLCRIEVAI 59 (86)
Q Consensus 6 ~~~~~~C~ICl~~~~~~~~~~~~-~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 59 (86)
..++..|+||++.+.++ +.+ + |||.||..||..|+..+..||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFIDA---TTIIE-CLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp HGGGTBCTTTSSBCSSE---EEETT-TCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred cCCcCCCccCChHHhCc---CEeCC-CCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 46788999999999865 344 6 99999999999999999999999998764
No 37
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.51 E-value=1.1e-14 Score=77.55 Aligned_cols=51 Identities=20% Similarity=0.358 Sum_probs=41.2
Q ss_pred cccccccccc-cccCCCce-eEcCCCCCcchHHhHHHHHhc-CCCccccccccch
Q 036506 8 YYCYCTVCLD-GISDGQKF-RRLPECKHCFHVECIDAWFQS-RSTCPLCRIEVAI 59 (86)
Q Consensus 8 ~~~~C~ICl~-~~~~~~~~-~~~~~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 59 (86)
++..|+||++ .+.++... ..++ |||.||..||.+|+.+ ...||+||..+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCCcCCcCCCCccCCCccCeecCC-CCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 4678999999 88776543 3455 9999999999999765 4679999998754
No 38
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.49 E-value=1.4e-14 Score=85.96 Aligned_cols=49 Identities=22% Similarity=0.559 Sum_probs=41.7
Q ss_pred CcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcC-CCccccccccch
Q 036506 7 PYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSR-STCPLCRIEVAI 59 (86)
Q Consensus 7 ~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~-~~CP~Cr~~~~~ 59 (86)
.++..|+||++.|.++ +.++ |||.||..||..|+..+ ..||+||..+..
T Consensus 50 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 50 EETFQCICCQELVFRP---ITTV-CQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHHTBCTTTSSBCSSE---EECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred ccCCCCCcCChHHcCc---EEee-CCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 4567899999999876 4566 99999999999999854 489999998864
No 39
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.48 E-value=4.4e-14 Score=79.19 Aligned_cols=53 Identities=17% Similarity=0.101 Sum_probs=47.1
Q ss_pred CCCCCcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCccccccccch
Q 036506 3 AAKCPYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVAI 59 (86)
Q Consensus 3 ~~~~~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 59 (86)
..+.+++..|+||++.|.++ ++++ |||.|++.||.+|+..+.+||+||..+..
T Consensus 8 ~~~~p~~~~CpI~~~~m~dP---V~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 8 YSDAPDEFRDPLMDTLMTDP---VRLP-SGTVMDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp CTTCCTTTBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred hhcCchheECcccCchhcCC---eECC-CCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 35568899999999999988 5676 99999999999999988999999998764
No 40
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.47 E-value=2.9e-14 Score=84.01 Aligned_cols=53 Identities=21% Similarity=0.424 Sum_probs=45.0
Q ss_pred CCCCcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCC-Cccccccccchh
Q 036506 4 AKCPYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRS-TCPLCRIEVAIV 60 (86)
Q Consensus 4 ~~~~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~-~CP~Cr~~~~~~ 60 (86)
+..+++..|+||++.+.++ +.++ |||.||..||..|+..+. .||+||..+...
T Consensus 13 ~~~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 13 PPLESKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp SCCCGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred cCCCCCCCCCcCChhhcCe---EECC-cCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 4567789999999999876 4566 999999999999998755 999999988653
No 41
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=4.1e-14 Score=77.63 Aligned_cols=51 Identities=25% Similarity=0.547 Sum_probs=42.1
Q ss_pred CcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcC--CCccccccccchh
Q 036506 7 PYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSR--STCPLCRIEVAIV 60 (86)
Q Consensus 7 ~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~--~~CP~Cr~~~~~~ 60 (86)
....+|+||++.+..++ ..+.|+|.||..||.+||+++ .+||+||..+...
T Consensus 13 ~~i~~C~IC~~~i~~g~---~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQ---SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 65 (74)
T ss_dssp SSSCBCSSSCCBCSSSE---ECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred CCCCcCcchhhHcccCC---ccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence 44578999999998663 333599999999999999976 7899999988644
No 42
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.45 E-value=4.8e-14 Score=83.58 Aligned_cols=54 Identities=26% Similarity=0.614 Sum_probs=44.9
Q ss_pred CCcccccccccccccCC----CceeEcCCCCCcchHHhHHHHHhcCCCccccccccchh
Q 036506 6 CPYYCYCTVCLDGISDG----QKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVAIV 60 (86)
Q Consensus 6 ~~~~~~C~ICl~~~~~~----~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 60 (86)
.++...|+||++.+..+ ...+.++ |||.||..||.+|+..+++||+||..+...
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 126 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEET-TSBEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCCccccccccCcceEeCC-CCChhhHHHHHHHHHcCCCCCCCCCcCChh
Confidence 35678999999998753 2335666 999999999999999999999999988654
No 43
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.45 E-value=3.4e-14 Score=87.87 Aligned_cols=50 Identities=28% Similarity=0.642 Sum_probs=41.7
Q ss_pred CcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhc-CCCccccccccch
Q 036506 7 PYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQS-RSTCPLCRIEVAI 59 (86)
Q Consensus 7 ~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 59 (86)
.++..|+||++.|.++ +..++ |||.||..||..|+.. +..||+||..+..
T Consensus 52 ~~~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 52 HSELMCPICLDMLKNT--MTTKE-CLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHHBCTTTSSBCSSE--EEETT-TCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCCcccChHhhCc--CEeCC-CCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 4567999999999865 33336 9999999999999997 7789999998753
No 44
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.45 E-value=1.6e-14 Score=84.56 Aligned_cols=52 Identities=25% Similarity=0.669 Sum_probs=44.1
Q ss_pred CCCCcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhc-CCCccccccccch
Q 036506 4 AKCPYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQS-RSTCPLCRIEVAI 59 (86)
Q Consensus 4 ~~~~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 59 (86)
....++..|+||++.+.++ +.++ |||.||..||.+|+.. ...||+||..+..
T Consensus 10 ~~~~~~~~C~iC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 10 IPSLSECQCGICMEILVEP---VTLP-CNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp CCCHHHHBCTTTCSBCSSC---EECT-TSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred cCCCCCCCCccCCcccCce---eEcC-CCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 3446678999999999877 4666 9999999999999986 6689999998864
No 45
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.44 E-value=1e-13 Score=76.65 Aligned_cols=56 Identities=14% Similarity=0.209 Sum_probs=43.1
Q ss_pred CCCCcccccccccccccCCCce-eEcCCCCCcchHHhHHHHHhc-CCCccccccccchh
Q 036506 4 AKCPYYCYCTVCLDGISDGQKF-RRLPECKHCFHVECIDAWFQS-RSTCPLCRIEVAIV 60 (86)
Q Consensus 4 ~~~~~~~~C~ICl~~~~~~~~~-~~~~~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~~~~~ 60 (86)
....++.+|+||++.+...+.. ..++ |||.||..|+.+++.. ...||+||..+...
T Consensus 6 ~~~~~~~~CpICle~~~~~d~~~~p~~-CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 6 DAKEDPVECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPED 63 (78)
T ss_dssp CCCCCCCBCTTTCCBCCTTTTTCCSST-TSCCCCHHHHHHHTTSSCSBCTTTCCBCSSC
T ss_pred cccccCCcCCccCccCccccccccccC-CCCCcCHHHHHHHHhcCCCCCCCCCCccCCC
Confidence 3457789999999998644322 2233 9999999999998864 56899999988654
No 46
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.43 E-value=6.5e-14 Score=82.11 Aligned_cols=50 Identities=28% Similarity=0.493 Sum_probs=42.7
Q ss_pred CcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhc-CCCccccccccchh
Q 036506 7 PYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQS-RSTCPLCRIEVAIV 60 (86)
Q Consensus 7 ~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~~~~~ 60 (86)
.++..|+||++.+.++ +.++ |||.||..||.+|+.. +..||+||..+...
T Consensus 21 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 21 VKSISCQICEHILADP---VETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFPT 71 (116)
T ss_dssp HHHTBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred cCCCCCCCCCcHhcCc---EEcC-CCCcccHHHHHHHHhHCcCcCCCCCCCCCHh
Confidence 4567899999999876 4566 9999999999999997 77899999988653
No 47
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.43 E-value=1.1e-13 Score=79.77 Aligned_cols=52 Identities=17% Similarity=0.122 Sum_probs=46.5
Q ss_pred CCCCcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCccccccccch
Q 036506 4 AKCPYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVAI 59 (86)
Q Consensus 4 ~~~~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 59 (86)
.+.+++..||||++.|.+| ++++ |||.|++.||.+|+..+.+||+||.++..
T Consensus 24 ~~~p~~~~CpI~~~~m~dP---V~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 24 SDAPDEFRDPLMDTLMTDP---VRLP-SGTIMDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp SSCSTTTBCTTTCSBCSSE---EEET-TTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred ccCcHhhCCcCccCcccCC---eECC-CCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence 4568899999999999988 5677 99999999999999988899999998764
No 48
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.43 E-value=5e-14 Score=81.80 Aligned_cols=49 Identities=24% Similarity=0.632 Sum_probs=41.3
Q ss_pred CcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCC---Cccccccccch
Q 036506 7 PYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRS---TCPLCRIEVAI 59 (86)
Q Consensus 7 ~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~---~CP~Cr~~~~~ 59 (86)
.+...|+||++.+.++ +.++ |||.||..||..|+..+. .||+||..+..
T Consensus 19 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 19 QKILECPICLELIKEP---VSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HHHTSCSSSCCCCSSC---CBCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred cCCCCCcccChhhcCe---EECC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 3567899999999876 3456 999999999999998653 89999998764
No 49
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.42 E-value=1.5e-13 Score=78.91 Aligned_cols=52 Identities=17% Similarity=0.098 Sum_probs=46.2
Q ss_pred CCCCcccccccccccccCCCceeEcCCCC-CcchHHhHHHHHhcCCCccccccccch
Q 036506 4 AKCPYYCYCTVCLDGISDGQKFRRLPECK-HCFHVECIDAWFQSRSTCPLCRIEVAI 59 (86)
Q Consensus 4 ~~~~~~~~C~ICl~~~~~~~~~~~~~~C~-H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 59 (86)
.+.+++..||||++.|.+| ++++ || |.|++.||.+||..+.+||+||..+..
T Consensus 17 ~~~p~~~~CpI~~~~m~dP---V~~~-cG~htf~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 17 ADACDEFLDPIMSTLMCDP---VVLP-SSRVTVDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp CSCCTTTBCTTTCSBCSSE---EECT-TTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred hcCcHhcCCcCccccccCC---eECC-CCCeEECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 4568899999999999988 5666 99 999999999999988899999998764
No 50
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.42 E-value=6.4e-14 Score=85.87 Aligned_cols=50 Identities=20% Similarity=0.527 Sum_probs=42.4
Q ss_pred CcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCC-Cccccccccchh
Q 036506 7 PYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRS-TCPLCRIEVAIV 60 (86)
Q Consensus 7 ~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~-~CP~Cr~~~~~~ 60 (86)
++...|+||++.|.++ ++++ |||.||..||..|+.... .||+||..+...
T Consensus 76 ~~~~~C~IC~~~~~~p---v~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 76 EQSFMCVCCQELVYQP---VTTE-CFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHHTBCTTTSSBCSSE---EECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred ccCCEeecCChhhcCC---EEcC-CCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 3567899999999876 4566 999999999999999754 899999988653
No 51
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.38 E-value=1.3e-13 Score=83.77 Aligned_cols=50 Identities=20% Similarity=0.424 Sum_probs=42.6
Q ss_pred CCCcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCC-Cccccccccc
Q 036506 5 KCPYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRS-TCPLCRIEVA 58 (86)
Q Consensus 5 ~~~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~-~CP~Cr~~~~ 58 (86)
..+++..|+||++.+.++ +.++ |||.||..||.+|+.... .||+||..+.
T Consensus 27 ~l~~~~~C~IC~~~~~~p---v~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRP---FQAQ-CGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp GCCGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred cCCcCcCCCCCChhhcCc---EECC-CCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 457788999999999877 4565 999999999999998765 8999999753
No 52
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.33 E-value=4.5e-13 Score=71.37 Aligned_cols=49 Identities=18% Similarity=0.413 Sum_probs=41.1
Q ss_pred CCcccccccccccccCCCceeEc--CCCCCc-chHHhHHHHHhcCCCccccccccc
Q 036506 6 CPYYCYCTVCLDGISDGQKFRRL--PECKHC-FHVECIDAWFQSRSTCPLCRIEVA 58 (86)
Q Consensus 6 ~~~~~~C~ICl~~~~~~~~~~~~--~~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~~~ 58 (86)
..++.+|+||++.+.+. ..+ | |||. ||..|+.+|++.+..||+||..+.
T Consensus 5 ~~~~~~C~IC~~~~~~~---~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 5 LNAIEPCVICQGRPKNG---CIVHGK-TGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp CGGGSCCTTTSSSCSCE---EEEETT-EEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CCCcCCCCcCCCCCCCE---EEECCC-CCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 35677899999986654 333 7 9999 899999999998899999999874
No 53
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.31 E-value=1.2e-12 Score=81.17 Aligned_cols=53 Identities=21% Similarity=0.420 Sum_probs=44.7
Q ss_pred CCCCcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcC-CCccccccccchh
Q 036506 4 AKCPYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSR-STCPLCRIEVAIV 60 (86)
Q Consensus 4 ~~~~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~-~~CP~Cr~~~~~~ 60 (86)
++.++...|+||++.+.++ +.++ |||.||..||.+|+..+ ..||+||..+...
T Consensus 13 ~~~~~~~~C~IC~~~~~~p---v~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 13 PPLESKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp SCCCGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred cCCCCCCCCCCCChhhcCc---EECC-CCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 4567889999999999877 4566 99999999999999864 4999999988653
No 54
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.29 E-value=3e-13 Score=79.48 Aligned_cols=46 Identities=22% Similarity=0.568 Sum_probs=40.1
Q ss_pred CcccccccccccccCCCceeEc-CCCCCcchHHhHHHHHhcCCCccccccccc
Q 036506 7 PYYCYCTVCLDGISDGQKFRRL-PECKHCFHVECIDAWFQSRSTCPLCRIEVA 58 (86)
Q Consensus 7 ~~~~~C~ICl~~~~~~~~~~~~-~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 58 (86)
.+...|+||++.|.++ +.+ + |||.||..||..|+. ..||+||..+.
T Consensus 20 ~~~~~C~IC~~~~~~p---v~~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~ 66 (117)
T 1jm7_B 20 EKLLRCSRCTNILREP---VCLGG-CEHIFCSNCVSDCIG--TGCPVCYTPAW 66 (117)
T ss_dssp HHTTSCSSSCSCCSSC---BCCCS-SSCCBCTTTGGGGTT--TBCSSSCCBCS
T ss_pred hhCCCCCCCChHhhCc---cEeCC-CCCHHHHHHHHHHhc--CCCcCCCCcCc
Confidence 4678999999999877 355 5 999999999999998 78999999874
No 55
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.29 E-value=3e-13 Score=70.22 Aligned_cols=46 Identities=26% Similarity=0.644 Sum_probs=38.8
Q ss_pred CcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCccccccccch
Q 036506 7 PYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVAI 59 (86)
Q Consensus 7 ~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 59 (86)
.+...|+||++.|.++ +.++ |||.||..|+.. ....||+||..+..
T Consensus 4 ~~~~~C~IC~~~~~~p---~~l~-CgH~fC~~Ci~~---~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCP---KLLP-CLHTLCSGCLEA---SGMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBCC---SCST-TSCCSBTTTCSS---SSSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCCe---EEcC-CCCcccHHHHcc---CCCCCCcCCcEeec
Confidence 5678899999999887 4676 999999999977 36689999998754
No 56
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.28 E-value=1.4e-12 Score=69.26 Aligned_cols=50 Identities=20% Similarity=0.466 Sum_probs=40.2
Q ss_pred CcccccccccccccCCCceeEcCCCCCc-chHHhHHHHHhcCCCccccccccc
Q 036506 7 PYYCYCTVCLDGISDGQKFRRLPECKHC-FHVECIDAWFQSRSTCPLCRIEVA 58 (86)
Q Consensus 7 ~~~~~C~ICl~~~~~~~~~~~~~~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~~~ 58 (86)
.....|+||++...+.. +..+| |||. ||..|+.+|.+++..||+||..+.
T Consensus 5 ~~~~~C~IC~~~~~~~~-~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDGN-IIHGR-TGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGGSBCTTTSSSBSCEE-EEETT-EEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CcCCCCcccCCcCCCeE-EEecC-CCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 45678999999866531 12237 9998 999999999988889999999874
No 57
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.27 E-value=2.1e-12 Score=73.43 Aligned_cols=49 Identities=18% Similarity=0.396 Sum_probs=40.9
Q ss_pred CCCcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcC------CCccc--cccc
Q 036506 5 KCPYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSR------STCPL--CRIE 56 (86)
Q Consensus 5 ~~~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~------~~CP~--Cr~~ 56 (86)
+.+.+..||||++.|.+| ++++.|||.|++.||.+||..+ ..||+ |+..
T Consensus 3 ~~~~~~~CPI~~~~~~dP---V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 3 SGSSGFTCPITKEEMKKP---VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCSSCCBCTTTCSBCSSE---EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CCCcEeECcCcCchhcCC---EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 457889999999999987 4553499999999999999864 48999 9865
No 58
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.26 E-value=2.8e-12 Score=88.67 Aligned_cols=48 Identities=27% Similarity=0.778 Sum_probs=41.3
Q ss_pred cccccccccccccCCCceeEcCCCCCcchHHhHHHHHh-cCCCccccccccch
Q 036506 8 YYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQ-SRSTCPLCRIEVAI 59 (86)
Q Consensus 8 ~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~-~~~~CP~Cr~~~~~ 59 (86)
....|+||++.+.++ +.++ |||.||..|+..|+. .+..||+||..+..
T Consensus 331 ~~~~C~ICle~~~~p---v~lp-CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 331 TFQLCKICAENDKDV---KIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SSSBCTTTSSSBCCE---EEET-TCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCCCccCcCCCCe---EEeC-CCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 347999999998665 5677 999999999999999 68899999998764
No 59
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.24 E-value=5.7e-12 Score=82.46 Aligned_cols=51 Identities=14% Similarity=0.201 Sum_probs=44.1
Q ss_pred CCCcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcC-CCccccccccch
Q 036506 5 KCPYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSR-STCPLCRIEVAI 59 (86)
Q Consensus 5 ~~~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~-~~CP~Cr~~~~~ 59 (86)
+.+....|+||++.|.+| ++++ |||.|++.||.+|+..+ .+||+||.++..
T Consensus 204 ~~~~~~~c~i~~~~~~dP---v~~~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 204 DIPDYLCGKISFELMREP---CITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CCCSTTBCTTTCSBCSSE---EECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CCCcccCCcCcCCHhcCC---eECC-CCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 457889999999999988 5676 99999999999999864 459999998864
No 60
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.23 E-value=1.6e-12 Score=70.90 Aligned_cols=45 Identities=24% Similarity=0.579 Sum_probs=38.0
Q ss_pred CcccccccccccccCCCceeEcCCCCCc-chHHhHHHHHhcCCCccccccccch
Q 036506 7 PYYCYCTVCLDGISDGQKFRRLPECKHC-FHVECIDAWFQSRSTCPLCRIEVAI 59 (86)
Q Consensus 7 ~~~~~C~ICl~~~~~~~~~~~~~~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~~~~ 59 (86)
.++..|+||++.+.++ +.++ |||. ||..|+..| ..||+||..+..
T Consensus 22 ~~~~~C~iC~~~~~~~---~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 22 QEEKLCKICMDRNIAI---VFVP-CGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HHHTBCTTTSSSBCCE---EEET-TCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred ccCCCCCCCCCCCCCE---EEcC-CCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 4567899999998765 5677 9999 999999988 789999998753
No 61
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=99.17 E-value=6.7e-12 Score=85.67 Aligned_cols=57 Identities=21% Similarity=0.603 Sum_probs=43.0
Q ss_pred CCCcccccccccccccCCCcee----EcCCCCCcchHHhHHHHHhcC-----------CCccccccccchhh
Q 036506 5 KCPYYCYCTVCLDGISDGQKFR----RLPECKHCFHVECIDAWFQSR-----------STCPLCRIEVAIVI 61 (86)
Q Consensus 5 ~~~~~~~C~ICl~~~~~~~~~~----~~~~C~H~fh~~Ci~~wl~~~-----------~~CP~Cr~~~~~~~ 61 (86)
+.....+|+||++.+.+...+. ..+.|+|.||..||.+|+++. +.||+||.++....
T Consensus 304 ~ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~sf 375 (381)
T 3k1l_B 304 EDNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTSF 375 (381)
T ss_dssp CCCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGGG
T ss_pred cccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCccH
Confidence 3457789999999988733221 122599999999999999752 46999999887554
No 62
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.16 E-value=2e-11 Score=69.17 Aligned_cols=53 Identities=19% Similarity=0.397 Sum_probs=42.2
Q ss_pred CcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhc--------CCCccc--cccc--cchh
Q 036506 7 PYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQS--------RSTCPL--CRIE--VAIV 60 (86)
Q Consensus 7 ~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~--------~~~CP~--Cr~~--~~~~ 60 (86)
.+..+|+||++.+..++.+...+ |||.||..|+.+++.. ...||. |+.. +...
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~-CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~ 67 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQEN 67 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHH
T ss_pred CCCcCCcccCcccccccceEcCC-CCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHH
Confidence 46789999999998776555556 9999999999999863 137999 9988 5543
No 63
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.15 E-value=3.5e-11 Score=75.66 Aligned_cols=52 Identities=13% Similarity=0.189 Sum_probs=45.0
Q ss_pred CCCCcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcC-CCccccccccch
Q 036506 4 AKCPYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSR-STCPLCRIEVAI 59 (86)
Q Consensus 4 ~~~~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~-~~CP~Cr~~~~~ 59 (86)
.+.|+...||||++.|.+| ++++ |||.|++.||..|+..+ .+||+|+.++..
T Consensus 101 ~~ip~~f~CPI~~elm~DP---V~~~-~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 101 REIPDYLCGKISFELMREP---CITP-SGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CCCCGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cCCcHhhcccCccccCCCC---eECC-CCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 4568999999999999987 5666 99999999999999864 479999998764
No 64
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=2.5e-11 Score=66.22 Aligned_cols=45 Identities=24% Similarity=0.583 Sum_probs=36.6
Q ss_pred CcccccccccccccCCCceeEcCCCCCc-chHHhHHHHHhcCCCccccccccch
Q 036506 7 PYYCYCTVCLDGISDGQKFRRLPECKHC-FHVECIDAWFQSRSTCPLCRIEVAI 59 (86)
Q Consensus 7 ~~~~~C~ICl~~~~~~~~~~~~~~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~~~~ 59 (86)
.++..|+||++.+.++ +.++ |||. ||..|+.+ ...||+||..+..
T Consensus 23 ~~~~~C~IC~~~~~~~---~~~p-CgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 23 QEEKLCKICMDRNIAI---VFVP-CGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HHHHSCSSSCSSCCCB---CCSS-SCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCCCCcCCCCCCCE---EEec-CCCHHHHHHHhhC----CCCCccCCceecC
Confidence 3467899999998765 4567 9999 99999964 4789999998753
No 65
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=1.1e-10 Score=62.76 Aligned_cols=47 Identities=30% Similarity=0.601 Sum_probs=38.4
Q ss_pred CCCcccccccccccccCCCceeEcCCCCCc-chHHhHHHHHhcCCCccccccccch
Q 036506 5 KCPYYCYCTVCLDGISDGQKFRRLPECKHC-FHVECIDAWFQSRSTCPLCRIEVAI 59 (86)
Q Consensus 5 ~~~~~~~C~ICl~~~~~~~~~~~~~~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~~~~ 59 (86)
...++..|.||++...+. +.+| |||. ||..|+.. ...||+||..+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~---v~~p-CgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 11 SEENSKDCVVCQNGTVNW---VLLP-CRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp SCCCSSCCSSSSSSCCCC---EETT-TTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred cCCCCCCCCCcCcCCCCE---EEEC-CCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 345678999999987654 6777 9999 99999984 5789999998754
No 66
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=99.04 E-value=2.6e-11 Score=67.00 Aligned_cols=46 Identities=28% Similarity=0.611 Sum_probs=37.7
Q ss_pred CcccccccccccccCCCceeEcCCCCCc-chHHhHHHHHhcCCCccccccccchh
Q 036506 7 PYYCYCTVCLDGISDGQKFRRLPECKHC-FHVECIDAWFQSRSTCPLCRIEVAIV 60 (86)
Q Consensus 7 ~~~~~C~ICl~~~~~~~~~~~~~~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 60 (86)
.++..|+||++.+.+. +.+| |||. ||..|+..| ..||+||..+...
T Consensus 16 ~~~~~C~IC~~~~~~~---v~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 16 KEAMLCMVCCEEEINS---TFCP-CGHTVCCESCAAQL----QSCPVCRSRVEHV 62 (79)
T ss_dssp HHHTBCTTTSSSBCCE---EEET-TCBCCBCHHHHTTC----SBCTTTCCBCCEE
T ss_pred CCCCEeEEeCcccCcE---EEEC-CCCHHHHHHHHHhc----CcCCCCCchhhCe
Confidence 4567899999987654 5777 9999 999999876 4899999987653
No 67
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.02 E-value=1.4e-10 Score=76.55 Aligned_cols=52 Identities=19% Similarity=0.389 Sum_probs=42.3
Q ss_pred CCCcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcC--CCccc--cccccch
Q 036506 5 KCPYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSR--STCPL--CRIEVAI 59 (86)
Q Consensus 5 ~~~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~--~~CP~--Cr~~~~~ 59 (86)
....+..||||++.|.+| ++...|||.|++.||..|+..+ ..||+ |+..+..
T Consensus 177 ~~~~el~CPIcl~~f~DP---Vts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 177 GGKIELTCPITCKPYEAP---LISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp SSBCCSBCTTTSSBCSSE---EEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred CCceeeECcCccCcccCC---eeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 347788999999999877 3332499999999999999864 47999 9987754
No 68
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=99.02 E-value=2.3e-10 Score=60.21 Aligned_cols=51 Identities=16% Similarity=0.496 Sum_probs=38.3
Q ss_pred CCCcccccccccccccCCCceeEcC-CCCC---cchHHhHHHHHhc--CCCccccccccc
Q 036506 5 KCPYYCYCTVCLDGISDGQKFRRLP-ECKH---CFHVECIDAWFQS--RSTCPLCRIEVA 58 (86)
Q Consensus 5 ~~~~~~~C~ICl~~~~~~~~~~~~~-~C~H---~fh~~Ci~~wl~~--~~~CP~Cr~~~~ 58 (86)
+..+...|.||++...++ . ++| .|.+ .||..||.+|+.. +.+||+|+..+.
T Consensus 2 e~~~~~~CrIC~~~~~~~--l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 2 EDEDVPVCWICNEELGNE--R-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp TTCSCCEETTTTEECSCC--C-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCCEeEEeecCCCCc--e-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 345677899999984332 2 466 2444 9999999999975 578999998874
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.82 E-value=5.5e-10 Score=76.29 Aligned_cols=45 Identities=29% Similarity=0.572 Sum_probs=38.0
Q ss_pred CcccccccccccccCCCceeEcCCCCCc-chHHhHHHHHhcCCCccccccccch
Q 036506 7 PYYCYCTVCLDGISDGQKFRRLPECKHC-FHVECIDAWFQSRSTCPLCRIEVAI 59 (86)
Q Consensus 7 ~~~~~C~ICl~~~~~~~~~~~~~~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~~~~ 59 (86)
.++..|+||++.+.++ +.++ |||. ||..|+..| ..||+||..+..
T Consensus 293 ~~~~~C~IC~~~~~~~---v~lp-CgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSV---VFIP-CGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp HTTCBCTTTSSSBCCE---EEET-TCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred cCCCCCCccCCcCCce---EEcC-CCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 3567899999998765 5677 9999 999999987 789999998753
No 70
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.79 E-value=2.3e-09 Score=56.43 Aligned_cols=49 Identities=10% Similarity=0.203 Sum_probs=41.1
Q ss_pred ccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCccccccccchh
Q 036506 9 YCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVAIV 60 (86)
Q Consensus 9 ~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 60 (86)
...|+|+++.+.++ ++++.+||.|.+.+|.+|+..+.+||+.+.++...
T Consensus 3 ~~~CpIs~~~m~dP---V~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~ 51 (61)
T 2bay_A 3 HMLCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIE 51 (61)
T ss_dssp -CCCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGG
T ss_pred eEEecCCCCCCCCC---EEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChh
Confidence 35799999999977 45524999999999999999888899999988654
No 71
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.57 E-value=4e-08 Score=64.08 Aligned_cols=49 Identities=24% Similarity=0.581 Sum_probs=40.6
Q ss_pred ccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcC--CCccccccccchh
Q 036506 9 YCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSR--STCPLCRIEVAIV 60 (86)
Q Consensus 9 ~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~--~~CP~Cr~~~~~~ 60 (86)
-..|.||.+.+..+ ...+.|+|.||..|+..|++.+ ..||.|+..+...
T Consensus 180 i~~C~iC~~iv~~g---~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSSC---EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCcCcchhhHHhCC---cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 56799999998876 3454599999999999999864 4899999988654
No 72
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.53 E-value=7.8e-08 Score=55.01 Aligned_cols=47 Identities=30% Similarity=0.562 Sum_probs=37.3
Q ss_pred ccccccccccCCCceeEcCCCCCcchHHhHHHHHhc-CCCccccccccchh
Q 036506 11 YCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQS-RSTCPLCRIEVAIV 60 (86)
Q Consensus 11 ~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~~~~~ 60 (86)
.|++|--++.. ..+.+| |+|+||.+|+..|..+ .+.||.|+.++...
T Consensus 3 fC~~C~~Pi~i--ygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~rV 50 (101)
T 3vk6_A 3 FCDKCGLPIKV--YGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQRI 50 (101)
T ss_dssp BCTTTCSBCSE--EEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCSEE
T ss_pred ecCccCCCeEE--Eeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeeeee
Confidence 36777777653 346888 9999999999999865 68999999987654
No 73
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=97.03 E-value=0.00046 Score=38.78 Aligned_cols=35 Identities=17% Similarity=0.364 Sum_probs=25.1
Q ss_pred cccccccccccccCCCceeEcCCCCCcchHHhHHHH
Q 036506 8 YYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAW 43 (86)
Q Consensus 8 ~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~w 43 (86)
++..|+||++.+..+....-+. |+|.||..|+..+
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~-C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETT-TTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCc-CChHHhHHHCHHH
Confidence 5688999997643322222255 9999999999984
No 74
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=96.74 E-value=0.0011 Score=34.99 Aligned_cols=49 Identities=29% Similarity=0.465 Sum_probs=35.3
Q ss_pred CCCCcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCC----Cccccccc
Q 036506 4 AKCPYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRS----TCPLCRIE 56 (86)
Q Consensus 4 ~~~~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~----~CP~Cr~~ 56 (86)
.....+..|.||.+. ..+.....|...||..|+.+.+.... .||.|...
T Consensus 7 ~~~~~~~~C~vC~~~----~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 7 QNLAPGARCGVCGDG----TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TCCCTTCCCTTTSCC----TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred cCCCCCCCcCCCCCC----CeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 344556789999753 33445556999999999988776532 69999764
No 75
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=96.63 E-value=0.00083 Score=37.89 Aligned_cols=49 Identities=14% Similarity=0.455 Sum_probs=37.5
Q ss_pred cccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCccccccccchhh
Q 036506 8 YYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVAIVI 61 (86)
Q Consensus 8 ~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 61 (86)
....|..|+-..+ . .+....|.+|..|+...|..+..||+|+.++....
T Consensus 27 G~~nCKsCWf~~k--~---LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl 75 (99)
T 2ko5_A 27 GPQFCKSCWFENK--G---LVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKL 75 (99)
T ss_dssp CCCCCCSSCSCCS--S---EEECSSCEEEHHHHHHTCSSSSEETTTTEECCCCS
T ss_pred CcccChhhccccC--C---eeeecchhhHHHHHHHHHhhccCCcccCCcCCcce
Confidence 3456888887643 2 33324699999999999999999999999987653
No 76
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=95.62 E-value=0.013 Score=32.36 Aligned_cols=39 Identities=21% Similarity=0.347 Sum_probs=27.0
Q ss_pred CCCCCcccccccccccccCCCceeEcCCCCCcchHHhHHHH
Q 036506 3 AAKCPYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAW 43 (86)
Q Consensus 3 ~~~~~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~w 43 (86)
.+..+.+..|.||-.. ...+.. -...|+-+||..|+.+.
T Consensus 9 ~e~~~~D~~C~VC~~~-t~~~l~-pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 9 REPVVNDEMCDVCEVW-TAESLF-PCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCCCCSCCCTTTCCC-CSSCCS-SCSSSSSCCCHHHHHHH
T ss_pred ccCCCCCcccCccccc-ccccee-ccccccccccHhhcccc
Confidence 4566788999999754 222221 11248999999999996
No 77
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=95.12 E-value=0.021 Score=29.86 Aligned_cols=37 Identities=22% Similarity=0.478 Sum_probs=25.5
Q ss_pred CCCCcccccccccccccCCCceeEcC-CCCCcchHHhH
Q 036506 4 AKCPYYCYCTVCLDGISDGQKFRRLP-ECKHCFHVECI 40 (86)
Q Consensus 4 ~~~~~~~~C~ICl~~~~~~~~~~~~~-~C~H~fh~~Ci 40 (86)
++++....|++|...+.+....+... .|..-||..|+
T Consensus 3 ~~~~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cv 40 (65)
T 2vpb_A 3 SSSDPVYPCGICTNEVNDDQDAILCEASCQKWFHRICT 40 (65)
T ss_dssp ------CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHH
T ss_pred CCCCCcCcCccCCCccCCCCCeEecccCccccCchhcc
Confidence 34677788999999987665555555 69999999998
No 78
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=94.85 E-value=0.023 Score=29.21 Aligned_cols=48 Identities=25% Similarity=0.647 Sum_probs=33.7
Q ss_pred CCCCcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhc----CCCcccccc
Q 036506 4 AKCPYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQS----RSTCPLCRI 55 (86)
Q Consensus 4 ~~~~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~----~~~CP~Cr~ 55 (86)
.+...+..|.||... ..+.....|...||..|+..-+.. .=.||.|+.
T Consensus 6 ~~~~~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 6 YETDHQDYCEVCQQG----GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CSSCCCSSCTTTSCC----SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred ccCCCCCCCccCCCC----CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 345667889999874 334444468899999999875443 226999965
No 79
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=94.68 E-value=0.02 Score=29.54 Aligned_cols=51 Identities=18% Similarity=0.379 Sum_probs=35.6
Q ss_pred CCCcccccccccccccCCCceeEcCCCCCcchHHhHHHHHh-----cCCCcccccc
Q 036506 5 KCPYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQ-----SRSTCPLCRI 55 (86)
Q Consensus 5 ~~~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~-----~~~~CP~Cr~ 55 (86)
++.++..|+||...+.+....+....|..-||..|+.--.. ..-.||.|+.
T Consensus 2 s~~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 2 SSGSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp CCSSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 45678889999998764444444446899999999854221 2346999965
No 80
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=94.51 E-value=0.05 Score=41.65 Aligned_cols=52 Identities=21% Similarity=0.218 Sum_probs=45.7
Q ss_pred CCCCcccccccccccccCCCceeEcCCCC-CcchHHhHHHHHhcCCCccccccccch
Q 036506 4 AKCPYYCYCTVCLDGISDGQKFRRLPECK-HCFHVECIDAWFQSRSTCPLCRIEVAI 59 (86)
Q Consensus 4 ~~~~~~~~C~ICl~~~~~~~~~~~~~~C~-H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 59 (86)
.+.|++..|||=++.+.+| ++++ -| +.|=+..|.+|+.++.+||.=|.++..
T Consensus 886 ~~iP~~F~cPIs~~lM~DP---Vilp-sG~~TydR~~I~~wl~~~~tdP~Tr~~L~~ 938 (968)
T 3m62_A 886 GDVPDEFLDPLMYTIMKDP---VILP-ASKMNIDRSTIKAHLLSDSTDPFNRMPLKL 938 (968)
T ss_dssp CCSCGGGBCTTTCSBCSSE---EECT-TTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred cCCcHHhCCcchhhHHhCC---eEcC-CCCEEECHHHHHHHHhcCCCCCCCCCCCCc
Confidence 5679999999999999988 5676 66 689999999999999999999988764
No 81
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=94.21 E-value=0.013 Score=31.27 Aligned_cols=52 Identities=17% Similarity=0.401 Sum_probs=35.1
Q ss_pred CCCcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhc----CCCcccccccc
Q 036506 5 KCPYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQS----RSTCPLCRIEV 57 (86)
Q Consensus 5 ~~~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~----~~~CP~Cr~~~ 57 (86)
+..+...|.||..... +..++....|...||..|+..-... .-.||.|+..+
T Consensus 14 ~~~~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 14 WGNQIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKI 69 (75)
T ss_dssp SSCEEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHH
T ss_pred cCCCCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCch
Confidence 3456667999988753 3334444468999999999764432 33699997654
No 82
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.54 E-value=0.0081 Score=30.38 Aligned_cols=48 Identities=23% Similarity=0.683 Sum_probs=33.1
Q ss_pred CCCCCcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcC----CCccccc
Q 036506 3 AAKCPYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSR----STCPLCR 54 (86)
Q Consensus 3 ~~~~~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~----~~CP~Cr 54 (86)
..+...+..|.||... + .+.....|...||..|+.+-+... -.||.|.
T Consensus 3 ~g~~~~~~~C~vC~~~---g-~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~ 54 (56)
T 2yql_A 3 SGSSGHEDFCSVCRKS---G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ 54 (56)
T ss_dssp CCCCSSCCSCSSSCCS---S-CCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHH
T ss_pred CCcCCCCCCCccCCCC---C-eEEEcCCCCcceECccCCCCcCCCCCCceEChhhh
Confidence 4566778889999875 2 334444689999999998644432 1577774
No 83
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=93.47 E-value=0.035 Score=27.29 Aligned_cols=44 Identities=30% Similarity=0.634 Sum_probs=29.1
Q ss_pred ccccccccccCCCceeEcCCCCCcchHHhHHHHHhcC----CCcccccc
Q 036506 11 YCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSR----STCPLCRI 55 (86)
Q Consensus 11 ~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~----~~CP~Cr~ 55 (86)
.|.||...-.. ..+.....|...||..|+.+=+... =.||.|+.
T Consensus 2 ~C~vC~~~~~~-~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGED-DKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCC-SCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCC-CCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 58888876333 3344445699999999997644432 25888864
No 84
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=93.10 E-value=0.014 Score=30.03 Aligned_cols=49 Identities=22% Similarity=0.583 Sum_probs=33.0
Q ss_pred CCCCcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcC----CCccccccc
Q 036506 4 AKCPYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSR----STCPLCRIE 56 (86)
Q Consensus 4 ~~~~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~----~~CP~Cr~~ 56 (86)
++...+..|.||.+. ..+.....|...||..|+.+-+... =.||.|+..
T Consensus 4 ~~d~~~~~C~vC~~~----g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 4 GSDHHMEFCRVCKDG----GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp CSCSSCSSCTTTCCC----SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred cccCCCCcCCCCCCC----CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 345667889999863 2233334588999999998644432 269999764
No 85
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=92.77 E-value=0.11 Score=27.89 Aligned_cols=50 Identities=20% Similarity=0.418 Sum_probs=32.6
Q ss_pred CcccccccccccccCCCceeEcCCCCCcchHHhHHHHHh-----cCCCcccccccc
Q 036506 7 PYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQ-----SRSTCPLCRIEV 57 (86)
Q Consensus 7 ~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~-----~~~~CP~Cr~~~ 57 (86)
.+...| ||...+......+....|..-||..|+.--.. ..-.||.|+...
T Consensus 10 ~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 10 LVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CCccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 455666 89888753333444446999999999842211 244799998754
No 86
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=92.73 E-value=0.34 Score=26.96 Aligned_cols=53 Identities=23% Similarity=0.437 Sum_probs=38.0
Q ss_pred cccccccccccccC---CCceeEcCCCCCcchHHhHHHHHh-cCCCccccccccchh
Q 036506 8 YYCYCTVCLDGISD---GQKFRRLPECKHCFHVECIDAWFQ-SRSTCPLCRIEVAIV 60 (86)
Q Consensus 8 ~~~~C~ICl~~~~~---~~~~~~~~~C~H~fh~~Ci~~wl~-~~~~CP~Cr~~~~~~ 60 (86)
....|.||-+.+-. ++..+....|+-..|+.|.+-=.+ .++.||.|++.+...
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr~ 71 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRL 71 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccccc
Confidence 45689999998642 333344445888899999976444 477899999988643
No 87
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=92.70 E-value=0.038 Score=31.07 Aligned_cols=48 Identities=21% Similarity=0.364 Sum_probs=31.8
Q ss_pred CcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhc---CCCccccccc
Q 036506 7 PYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQS---RSTCPLCRIE 56 (86)
Q Consensus 7 ~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~---~~~CP~Cr~~ 56 (86)
.+...| ||......+.. +....|.-.||..|+..-+.. .-.||.|+..
T Consensus 26 ~d~vrC-iC~~~~~~~~m-i~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~~ 76 (98)
T 2lv9_A 26 TDVTRC-ICGFTHDDGYM-ICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQPR 76 (98)
T ss_dssp CCBCCC-TTSCCSCSSCE-EEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSSS
T ss_pred CCCEEe-ECCCccCCCcE-EEcCCCCCcCcCcCCCCCccCCCCCEECCCCcCC
Confidence 344667 89877555443 444569999999998653332 2379999743
No 88
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=92.08 E-value=0.027 Score=34.82 Aligned_cols=47 Identities=28% Similarity=0.648 Sum_probs=33.6
Q ss_pred CcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcC----CCcccccccc
Q 036506 7 PYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSR----STCPLCRIEV 57 (86)
Q Consensus 7 ~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~----~~CP~Cr~~~ 57 (86)
+.+..|.+|.+. ++ +.....|...||..|+.+-+... =.||.|+..-
T Consensus 2 ~~~~~C~~C~~~---g~-ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 2 PNEDWCAVCQNG---GE-LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp CSCSSCTTTCCC---SS-CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCccccCCCC---Ce-eeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 566789999854 23 44555689999999997766542 2699998653
No 89
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=91.87 E-value=0.037 Score=31.71 Aligned_cols=46 Identities=26% Similarity=0.563 Sum_probs=30.4
Q ss_pred cccccccccccCCCceeEcCCCCCcchHHhHHHHHhcC----CCcccccc
Q 036506 10 CYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSR----STCPLCRI 55 (86)
Q Consensus 10 ~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~----~~CP~Cr~ 55 (86)
..|.||...-.+++.+.....|...||..|+.+-|... =.||.|+.
T Consensus 62 ~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 62 KTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 36778876533334444555699999999997655432 26888864
No 90
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=91.84 E-value=0.031 Score=35.28 Aligned_cols=48 Identities=27% Similarity=0.559 Sum_probs=34.5
Q ss_pred CCCcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcC----CCccccccc
Q 036506 5 KCPYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSR----STCPLCRIE 56 (86)
Q Consensus 5 ~~~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~----~~CP~Cr~~ 56 (86)
+.+.+..|.+|... ..+.....|...||..|+.+-+... =.||.|+..
T Consensus 3 ~d~~~~~C~~C~~~----g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 54 (207)
T 3u5n_A 3 DDPNEDWCAVCQNG----GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDI 54 (207)
T ss_dssp CCSSCSSBTTTCCC----EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCCCCCCCCCCCC----CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCc
Confidence 44566779999854 2344555689999999998766542 269999864
No 91
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=91.80 E-value=0.4 Score=26.25 Aligned_cols=42 Identities=17% Similarity=0.262 Sum_probs=31.1
Q ss_pred CCCcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhc
Q 036506 5 KCPYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQS 46 (86)
Q Consensus 5 ~~~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~ 46 (86)
.....+.|.+|.+.+++..-+..-..=.|.||..|-...+++
T Consensus 11 ~~~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 11 ANSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CSCCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CCCCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 345678999999999876544322233799999999998874
No 92
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=91.40 E-value=0.11 Score=26.76 Aligned_cols=51 Identities=18% Similarity=0.414 Sum_probs=35.1
Q ss_pred CCCccccccccccccc-CCCceeEcCCCCCcchHHhHHHHHh-------cCCCcccccc
Q 036506 5 KCPYYCYCTVCLDGIS-DGQKFRRLPECKHCFHVECIDAWFQ-------SRSTCPLCRI 55 (86)
Q Consensus 5 ~~~~~~~C~ICl~~~~-~~~~~~~~~~C~H~fh~~Ci~~wl~-------~~~~CP~Cr~ 55 (86)
+..++..|.||..... ++..+.....|.-.||..|+.+-+. ..=.||.|..
T Consensus 2 ~~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~ 60 (66)
T 2yt5_A 2 SSGSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVF 60 (66)
T ss_dssp CCCCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcC
Confidence 5667889999998643 2344555557999999999876332 1236888865
No 93
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=90.84 E-value=0.24 Score=24.39 Aligned_cols=44 Identities=18% Similarity=0.375 Sum_probs=28.0
Q ss_pred ccccccccccCCCceeEcC-CCCCcchHHhHHHH----HhcCCCccccc
Q 036506 11 YCTVCLDGISDGQKFRRLP-ECKHCFHVECIDAW----FQSRSTCPLCR 54 (86)
Q Consensus 11 ~C~ICl~~~~~~~~~~~~~-~C~H~fh~~Ci~~w----l~~~~~CP~Cr 54 (86)
.|.||...+.++...+... .|..-||..|+.-- ....-.||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 5788988876544444444 48889999997421 12345687774
No 94
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=90.05 E-value=0.075 Score=30.22 Aligned_cols=40 Identities=20% Similarity=0.307 Sum_probs=28.1
Q ss_pred CCCcccccccccccccCCCceeEcCCCCCcchHHhHHHHHh
Q 036506 5 KCPYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQ 45 (86)
Q Consensus 5 ~~~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~ 45 (86)
....+..|.||.+.-...+.+ ....|+..||..|+...+.
T Consensus 3 ~~~~~~~C~~C~~~g~~~~ll-~C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 3 SGSSGANCAVCDSPGDLLDQF-FCTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCCCCSCBTTTCCCCCTTTSE-ECSSSCCEECTTTTTCCCC
T ss_pred CCCCCCCCcCCCCCCCCcCCe-ECCCCCCCcChHHhCCccc
Confidence 346778899998874332223 3345999999999987654
No 95
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=89.70 E-value=0.67 Score=27.79 Aligned_cols=48 Identities=21% Similarity=0.384 Sum_probs=33.6
Q ss_pred CCCcccccccccccccCCCceeEcCCCCCcchHHhHHHHHh---------c--CCCccccccc
Q 036506 5 KCPYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQ---------S--RSTCPLCRIE 56 (86)
Q Consensus 5 ~~~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~---------~--~~~CP~Cr~~ 56 (86)
+...+..|.+|.+. ..+.....|...||..||.+-+. . .=.||+|+..
T Consensus 59 ~Dg~~d~C~vC~~G----G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 59 SDGMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp TTSCBCSCSSSCCC----SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCCCCeecccCCC----CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 34567889999875 23334445899999999997653 1 2269999753
No 96
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=89.60 E-value=0.041 Score=28.65 Aligned_cols=46 Identities=26% Similarity=0.560 Sum_probs=31.9
Q ss_pred CCcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcC----CCcccccc
Q 036506 6 CPYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSR----STCPLCRI 55 (86)
Q Consensus 6 ~~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~----~~CP~Cr~ 55 (86)
...+..|.||.+. + .+.....|...||..|+.+-+... =.||.|..
T Consensus 5 ~~~~~~C~vC~~~---g-~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 5 QKNEDECAVCRDG---G-ELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp CSCCCSBSSSSCC---S-SCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCccCCCC---C-CEEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 3567789999864 2 334444688999999998644432 25999964
No 97
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=89.56 E-value=0.037 Score=28.20 Aligned_cols=46 Identities=24% Similarity=0.708 Sum_probs=31.6
Q ss_pred cccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcC----CCcccccccc
Q 036506 8 YYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSR----STCPLCRIEV 57 (86)
Q Consensus 8 ~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~----~~CP~Cr~~~ 57 (86)
.+..|.||... + .+.....|...||..|+.+-+... -.||.|....
T Consensus 4 ~~~~C~vC~~~---g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 4 HEDFCSVCRKS---G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CCSSCTTTCCC---S-SCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCCcCCCCC---C-cEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence 46789999874 2 334444699999999998644432 2699996543
No 98
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=89.09 E-value=0.36 Score=25.44 Aligned_cols=36 Identities=17% Similarity=0.168 Sum_probs=24.9
Q ss_pred CcccccccccccccCCCceeEcCCCCCcchHHhHHH
Q 036506 7 PYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDA 42 (86)
Q Consensus 7 ~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~ 42 (86)
..+..|.+|...|..-..--....||.+||..|...
T Consensus 9 ~~~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 9 IDSDACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp CCCSBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred ccCCcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 345689999998875322223346999999999643
No 99
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.52 E-value=0.045 Score=30.44 Aligned_cols=51 Identities=24% Similarity=0.479 Sum_probs=34.3
Q ss_pred CCCcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcC----CCccccccc
Q 036506 5 KCPYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSR----STCPLCRIE 56 (86)
Q Consensus 5 ~~~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~----~~CP~Cr~~ 56 (86)
+..++..|.||...-.. ..+.....|...||..|+.+=+... =.||.|+..
T Consensus 12 ~~~~~~~C~vC~~~~~~-~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 12 QFIDSYICQVCSRGDED-DKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCCCSSSCCSGGG-GGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred hccCCCCCccCCCcCCC-CCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 34556689999886432 3344555699999999997544432 259999653
No 100
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=88.43 E-value=0.69 Score=24.35 Aligned_cols=52 Identities=19% Similarity=0.418 Sum_probs=35.3
Q ss_pred CCCCcccccccccccc-cCCCceeEcCCCCCcchHHhHHHHHhc--CCCcccccc
Q 036506 4 AKCPYYCYCTVCLDGI-SDGQKFRRLPECKHCFHVECIDAWFQS--RSTCPLCRI 55 (86)
Q Consensus 4 ~~~~~~~~C~ICl~~~-~~~~~~~~~~~C~H~fh~~Ci~~wl~~--~~~CP~Cr~ 55 (86)
.....+..|.||.+.- .+++.+.....|.-.||..|+..-..- .=.||.|+.
T Consensus 11 ~~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 11 SLIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCCCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred cCCCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 4557788999998763 234455555579999999999753211 226888864
No 101
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=88.21 E-value=0.26 Score=27.91 Aligned_cols=48 Identities=25% Similarity=0.499 Sum_probs=32.6
Q ss_pred cccccccccccCCCceeEcC-CCCCcchHHhHHHH------Hh----cCCCcccccccc
Q 036506 10 CYCTVCLDGISDGQKFRRLP-ECKHCFHVECIDAW------FQ----SRSTCPLCRIEV 57 (86)
Q Consensus 10 ~~C~ICl~~~~~~~~~~~~~-~C~H~fh~~Ci~~w------l~----~~~~CP~Cr~~~ 57 (86)
..|+||...+.+....+..- .|..-||..|+.-- +. ..-.||.|+...
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 46999999986654444443 58999999998321 10 234799997643
No 102
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=88.02 E-value=0.015 Score=34.06 Aligned_cols=48 Identities=19% Similarity=0.365 Sum_probs=31.2
Q ss_pred ccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCccccccc
Q 036506 9 YCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIE 56 (86)
Q Consensus 9 ~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~ 56 (86)
...|..|...|..-..--....||.+||..|........+.|-.|...
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~ 66 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRF 66 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHH
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHH
Confidence 357999999886432223444699999999977665556778888553
No 103
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=88.00 E-value=0.61 Score=24.58 Aligned_cols=48 Identities=25% Similarity=0.615 Sum_probs=31.6
Q ss_pred CcccccccccccccCCCceeEcCCCCCcchHHhHHHH------H---hcCCCccccccc
Q 036506 7 PYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAW------F---QSRSTCPLCRIE 56 (86)
Q Consensus 7 ~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~w------l---~~~~~CP~Cr~~ 56 (86)
+....| ||.........| ....|..-||..|+.-- + ...-.||.|+..
T Consensus 14 ~~~~~C-~C~~~~~~~~MI-~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 14 PNALYC-ICRQPHNNRFMI-CCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp TTCCCS-TTCCCCCSSCEE-ECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCCCEE-ECCCccCCCCEE-EeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 445677 898876543344 34459999999998321 1 235679999754
No 104
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=87.58 E-value=0.18 Score=27.93 Aligned_cols=47 Identities=28% Similarity=0.681 Sum_probs=33.0
Q ss_pred CCcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCC----Cccccccc
Q 036506 6 CPYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRS----TCPLCRIE 56 (86)
Q Consensus 6 ~~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~----~CP~Cr~~ 56 (86)
...+..|.+|... + .+.....|.-.||..|+.+=+.... .||.|+..
T Consensus 22 d~n~~~C~vC~~~---g-~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 22 DDSATICRVCQKP---G-DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSCCSSSCSS---S-CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCCcCcCcCCC---C-CEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 3566789999865 2 3344446889999999987655422 69999753
No 105
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=87.46 E-value=0.39 Score=25.31 Aligned_cols=46 Identities=26% Similarity=0.644 Sum_probs=28.3
Q ss_pred CCcccccccccccccCCCceeEcCC--CC-CcchHHhHHHHHhc----CCCccccccc
Q 036506 6 CPYYCYCTVCLDGISDGQKFRRLPE--CK-HCFHVECIDAWFQS----RSTCPLCRIE 56 (86)
Q Consensus 6 ~~~~~~C~ICl~~~~~~~~~~~~~~--C~-H~fh~~Ci~~wl~~----~~~CP~Cr~~ 56 (86)
..+...| ||..... +. ++..-. |. ..||..|+. |.. .-.||.|+..
T Consensus 13 ~~~~~~C-~C~~~~~-g~-MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 13 PNEPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp TTSCCCS-TTCCCSC-SS-EECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSC
T ss_pred CCCCCEE-ECCCCCC-CC-EeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcc
Confidence 3456677 8988643 33 222223 44 589999997 333 2369999764
No 106
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=87.35 E-value=1.3 Score=26.10 Aligned_cols=49 Identities=20% Similarity=0.391 Sum_probs=33.1
Q ss_pred CCCCcccccccccccccCCCceeEcCCCCCcchHHhHHHHH-----hc------CCCccccccc
Q 036506 4 AKCPYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWF-----QS------RSTCPLCRIE 56 (86)
Q Consensus 4 ~~~~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl-----~~------~~~CP~Cr~~ 56 (86)
++...+..|.||.+. ..+.....|-..||..||.+-+ .. .=.|++|+..
T Consensus 52 d~Dg~~~~C~vC~dG----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 52 DSDGMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp CTTSCBSSCTTTCCC----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCCCCcCeecCCC----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 345567789999875 2333444588999999999752 11 2279999653
No 107
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=86.09 E-value=0.79 Score=24.72 Aligned_cols=36 Identities=11% Similarity=0.136 Sum_probs=25.5
Q ss_pred CcccccccccccccCCCceeEcCCCCCcchHHhHHH
Q 036506 7 PYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDA 42 (86)
Q Consensus 7 ~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~ 42 (86)
.+...|.+|...|..-..--....||.+||..|...
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 455689999999875432223346999999999755
No 108
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=85.74 E-value=0.74 Score=25.18 Aligned_cols=53 Identities=15% Similarity=0.243 Sum_probs=34.3
Q ss_pred CCcccccccccccccCCCceeEcCCCCCcchHHhHHHHHh-------cCCCccccccccc
Q 036506 6 CPYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQ-------SRSTCPLCRIEVA 58 (86)
Q Consensus 6 ~~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~-------~~~~CP~Cr~~~~ 58 (86)
+.+...|.+|...|..-..--....||.+||..|....+. ..+.|-.|...+.
T Consensus 6 ~~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~ 65 (88)
T 1wfk_A 6 SGMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILT 65 (88)
T ss_dssp CCCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHH
T ss_pred CCcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHH
Confidence 4455689999999875432223446999999999765321 1345777765443
No 109
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=85.73 E-value=0.55 Score=29.23 Aligned_cols=50 Identities=18% Similarity=0.419 Sum_probs=35.5
Q ss_pred ccccccccccccCCCc---eeEcCCCCCcchHHhHHH------HHh-----cCCCccccccccc
Q 036506 9 YCYCTVCLDGISDGQK---FRRLPECKHCFHVECIDA------WFQ-----SRSTCPLCRIEVA 58 (86)
Q Consensus 9 ~~~C~ICl~~~~~~~~---~~~~~~C~H~fh~~Ci~~------wl~-----~~~~CP~Cr~~~~ 58 (86)
+..|+||...+.+++. .+....|..-||..|+.- -+. ..-.||.|+..-.
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 4579999999887652 445556999999999832 111 1458999987644
No 110
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=85.17 E-value=0.66 Score=24.93 Aligned_cols=36 Identities=19% Similarity=0.362 Sum_probs=25.3
Q ss_pred CcccccccccccccCCCceeEcCCCCCcchHHhHHH
Q 036506 7 PYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDA 42 (86)
Q Consensus 7 ~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~ 42 (86)
.+...|.+|...|..-..--....||.+||..|...
T Consensus 17 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 17 DEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred ccCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 344579999999875432223446999999999754
No 111
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=84.98 E-value=2.1 Score=24.18 Aligned_cols=34 Identities=18% Similarity=0.456 Sum_probs=23.1
Q ss_pred cccccccccccc-----cCCCceeEcCCCCCcchHHhHH
Q 036506 8 YYCYCTVCLDGI-----SDGQKFRRLPECKHCFHVECID 41 (86)
Q Consensus 8 ~~~~C~ICl~~~-----~~~~~~~~~~~C~H~fh~~Ci~ 41 (86)
....|.+|+..- ..++.+..-..|+..||..|+.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 346789998752 1223344555699999999995
No 112
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=84.48 E-value=0.7 Score=26.91 Aligned_cols=35 Identities=23% Similarity=0.422 Sum_probs=24.3
Q ss_pred cccccccccccccCCCceeEcCCCCCcchHHhHHH
Q 036506 8 YYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDA 42 (86)
Q Consensus 8 ~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~ 42 (86)
+-..|.+|...|..-..--....||++||..|...
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 34579999999875332223446999999999644
No 113
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=84.01 E-value=0.86 Score=24.97 Aligned_cols=50 Identities=14% Similarity=0.291 Sum_probs=32.0
Q ss_pred cccccccccccccCCCceeEcCCCCCcchHHhHHHHHh------cCCCcccccccc
Q 036506 8 YYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQ------SRSTCPLCRIEV 57 (86)
Q Consensus 8 ~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~------~~~~CP~Cr~~~ 57 (86)
+...|.+|...|..-..--....||.+||..|...+.. ..+.|-.|...+
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l 74 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETI 74 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHH
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHH
Confidence 34579999998865332224446999999999765432 123566665544
No 114
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=84.00 E-value=0.36 Score=24.53 Aligned_cols=45 Identities=24% Similarity=0.628 Sum_probs=26.2
Q ss_pred CCcccccccccccccCCCceeEcCC--CC-CcchHHhHHHHHhc----CCCcccccc
Q 036506 6 CPYYCYCTVCLDGISDGQKFRRLPE--CK-HCFHVECIDAWFQS----RSTCPLCRI 55 (86)
Q Consensus 6 ~~~~~~C~ICl~~~~~~~~~~~~~~--C~-H~fh~~Ci~~wl~~----~~~CP~Cr~ 55 (86)
..+...| ||..... + .++.... |. ..||..|+. |.. .-.||.|+.
T Consensus 7 ~~e~~~C-~C~~~~~-g-~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 7 PNEPTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp --CCEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCCCEE-ECCCcCC-C-CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 3455666 8988632 3 2333334 44 579999997 333 226888854
No 115
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=83.93 E-value=0.92 Score=25.84 Aligned_cols=49 Identities=22% Similarity=0.559 Sum_probs=30.6
Q ss_pred CCCCCcccccccccccccCCCceeEcC--CCCCcchHHhHHHHHhcCC----Ccccccccc
Q 036506 3 AAKCPYYCYCTVCLDGISDGQKFRRLP--ECKHCFHVECIDAWFQSRS----TCPLCRIEV 57 (86)
Q Consensus 3 ~~~~~~~~~C~ICl~~~~~~~~~~~~~--~C~H~fh~~Ci~~wl~~~~----~CP~Cr~~~ 57 (86)
..+...+..|.+|.+. ..+.... .|...||..|+. |.... .||.|+-.+
T Consensus 9 ~~~~~~~~~C~~C~~~----G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~ 63 (107)
T 4gne_A 9 EPKQMHEDYCFQCGDG----GELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDE 63 (107)
T ss_dssp -CCCSSCSSCTTTCCC----SEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTT
T ss_pred CCcCCCCCCCCcCCCC----CcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCc
Confidence 3455677889999843 2333333 377899999997 44322 588765433
No 116
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=83.74 E-value=0.17 Score=27.28 Aligned_cols=44 Identities=34% Similarity=0.642 Sum_probs=27.0
Q ss_pred ccccccccccCCCceeEcCCCCCcchHHhHHHHHhc----C-CCcccccc
Q 036506 11 YCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQS----R-STCPLCRI 55 (86)
Q Consensus 11 ~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~----~-~~CP~Cr~ 55 (86)
.|.||...- ++..+.....|...||..|+.+-|.. . =.||.|+.
T Consensus 28 ~C~vC~~~~-d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCS-CGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCC-CCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 455555442 22344455568999999999875543 1 26888864
No 117
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=83.54 E-value=0.8 Score=28.90 Aligned_cols=36 Identities=14% Similarity=0.257 Sum_probs=25.1
Q ss_pred CcccccccccccccCCCceeEcCCCCCcchHHhHHH
Q 036506 7 PYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDA 42 (86)
Q Consensus 7 ~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~ 42 (86)
.++..|.+|...|..-..--....||++||..|...
T Consensus 159 ~~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 159 ADGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CCCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCCCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 346799999998864332223446999999988643
No 118
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=83.47 E-value=0.41 Score=24.29 Aligned_cols=45 Identities=27% Similarity=0.665 Sum_probs=26.9
Q ss_pred CCcccccccccccccCCCceeEcCC--CC-CcchHHhHHHHHhc----CCCcccccc
Q 036506 6 CPYYCYCTVCLDGISDGQKFRRLPE--CK-HCFHVECIDAWFQS----RSTCPLCRI 55 (86)
Q Consensus 6 ~~~~~~C~ICl~~~~~~~~~~~~~~--C~-H~fh~~Ci~~wl~~----~~~CP~Cr~ 55 (86)
..+...| ||.... .+. ++.... |. .-||..|+. +.. .-.||.|+.
T Consensus 6 ~~e~~yC-~C~~~~-~g~-mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 6 SNEPTYC-LCHQVS-YGE-MIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp --CCEET-TTTEEC-CSE-EEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCCcEE-ECCCCC-CCC-eeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 3456667 898864 232 333334 55 689999997 333 226888864
No 119
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.37 E-value=0.89 Score=24.50 Aligned_cols=36 Identities=25% Similarity=0.420 Sum_probs=24.4
Q ss_pred CcccccccccccccCCCceeEcCCCCCcchHHhHHH
Q 036506 7 PYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDA 42 (86)
Q Consensus 7 ~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~ 42 (86)
.+-..|.+|...|..-..--....||.+||..|...
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 445689999998864322223336999999999543
No 120
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=83.32 E-value=0.46 Score=26.91 Aligned_cols=12 Identities=25% Similarity=1.113 Sum_probs=10.9
Q ss_pred chHHhHHHHHhc
Q 036506 35 FHVECIDAWFQS 46 (86)
Q Consensus 35 fh~~Ci~~wl~~ 46 (86)
||+.|+.+|+..
T Consensus 43 FCRNCLskWy~~ 54 (105)
T 2o35_A 43 FCRNCLSNWYRE 54 (105)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999974
No 121
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=83.29 E-value=0.48 Score=26.28 Aligned_cols=45 Identities=27% Similarity=0.659 Sum_probs=27.6
Q ss_pred CcccccccccccccCCCceeEcCC--CC-CcchHHhHHHHHhc----CCCccccccc
Q 036506 7 PYYCYCTVCLDGISDGQKFRRLPE--CK-HCFHVECIDAWFQS----RSTCPLCRIE 56 (86)
Q Consensus 7 ~~~~~C~ICl~~~~~~~~~~~~~~--C~-H~fh~~Ci~~wl~~----~~~CP~Cr~~ 56 (86)
.+...| ||..... +.. +.... |. ..||..|+. |.. .-.||.|+..
T Consensus 34 ~e~~yC-iC~~~~~-g~M-I~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 34 NEPTYC-LCHQVSY-GEM-IGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp CCCBCS-TTCCBCC-SCC-CCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCC
T ss_pred CCCcEE-ECCCCCC-CCE-eEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCc
Confidence 455667 9988643 322 22223 44 579999997 332 2369999764
No 122
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=83.14 E-value=0.47 Score=26.82 Aligned_cols=12 Identities=25% Similarity=0.933 Sum_probs=10.9
Q ss_pred chHHhHHHHHhc
Q 036506 35 FHVECIDAWFQS 46 (86)
Q Consensus 35 fh~~Ci~~wl~~ 46 (86)
||+.|+..|+..
T Consensus 42 FCRNCLskWy~~ 53 (104)
T 3fyb_A 42 FCRNCLAKWLME 53 (104)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999973
No 123
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=82.96 E-value=1.1 Score=24.52 Aligned_cols=50 Identities=20% Similarity=0.450 Sum_probs=33.7
Q ss_pred Ccccccccccccc-cCCCceeEcCCCCCcchHHhHHHHHhc--CCCccccccc
Q 036506 7 PYYCYCTVCLDGI-SDGQKFRRLPECKHCFHVECIDAWFQS--RSTCPLCRIE 56 (86)
Q Consensus 7 ~~~~~C~ICl~~~-~~~~~~~~~~~C~H~fh~~Ci~~wl~~--~~~CP~Cr~~ 56 (86)
..+..|.||...- .+.+.+.....|.-.||..|+..-+.- .=.||.|...
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~ 75 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 75 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCc
Confidence 5678899999763 233345555568899999999753221 2269999654
No 124
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=82.87 E-value=1.6 Score=23.16 Aligned_cols=48 Identities=21% Similarity=0.466 Sum_probs=30.6
Q ss_pred CcccccccccccccCCCceeEcC--CCCCcchHHhHHHHHh---------cCCCccccccc
Q 036506 7 PYYCYCTVCLDGISDGQKFRRLP--ECKHCFHVECIDAWFQ---------SRSTCPLCRIE 56 (86)
Q Consensus 7 ~~~~~C~ICl~~~~~~~~~~~~~--~C~H~fh~~Ci~~wl~---------~~~~CP~Cr~~ 56 (86)
.+...| ||......+..| ..- .|..-||..|+.---. ..-.||.|+..
T Consensus 14 ~~~~~C-iC~~~~~~g~MI-~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 14 EIKVRC-VCGNSLETDSMI-QCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCCCC-SSCCCCCCSCEE-ECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred CCCEEe-ECCCcCCCCCEE-EECCccCCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 456677 898874444333 333 4889999999853211 24479999754
No 125
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=82.04 E-value=0.46 Score=21.62 Aligned_cols=16 Identities=13% Similarity=0.453 Sum_probs=9.9
Q ss_pred CcccccccccccccCC
Q 036506 7 PYYCYCTVCLDGISDG 22 (86)
Q Consensus 7 ~~~~~C~ICl~~~~~~ 22 (86)
.+...||||+..+...
T Consensus 3 ~EGFiCP~C~~~l~s~ 18 (34)
T 3mjh_B 3 SEGFICPQCMKSLGSA 18 (34)
T ss_dssp SEEEECTTTCCEESSH
T ss_pred CcccCCcHHHHHcCCH
Confidence 4456677777766544
No 126
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=81.75 E-value=1 Score=23.18 Aligned_cols=46 Identities=20% Similarity=0.442 Sum_probs=31.4
Q ss_pred CCCCcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCccccccccch
Q 036506 4 AKCPYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVAI 59 (86)
Q Consensus 4 ~~~~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 59 (86)
.+......|+-|...+...+.+... -+..||..|+ .|-.|+..+..
T Consensus 6 ~~~~~~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~ 51 (77)
T 1g47_A 6 ANALASATCERCKGGFAPAEKIVNS--NGELYHEQCF--------VCAQCFQQFPE 51 (77)
T ss_dssp CSCCCCCBCSSSCCBCCSTTTCEEE--TTEEECTTTC--------CCTTTCCCCGG
T ss_pred ccCCCCCCchhcCCccCCCceEEEe--CccEeccccC--------eECCCCCCCCC
Confidence 4456677899999998754443222 5678888775 67788777653
No 127
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=81.39 E-value=1.1 Score=28.45 Aligned_cols=36 Identities=14% Similarity=0.180 Sum_probs=25.3
Q ss_pred CcccccccccccccCCCceeEcCCCCCcchHHhHHH
Q 036506 7 PYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDA 42 (86)
Q Consensus 7 ~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~ 42 (86)
..+..|.+|...|..-..--....||.+||..|...
T Consensus 162 ~~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 162 VDAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp CCCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred ccCCCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 345689999998875332234446999999999654
No 128
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=81.00 E-value=1.2 Score=25.31 Aligned_cols=34 Identities=24% Similarity=0.613 Sum_probs=22.8
Q ss_pred ccccccccccc------CCCceeEcCCCCCcchHHhHHHH
Q 036506 10 CYCTVCLDGIS------DGQKFRRLPECKHCFHVECIDAW 43 (86)
Q Consensus 10 ~~C~ICl~~~~------~~~~~~~~~~C~H~fh~~Ci~~w 43 (86)
..|.||+..-. .+..+.....|+..||..|+...
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 46899987541 12233444469999999998653
No 129
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=80.68 E-value=0.25 Score=30.71 Aligned_cols=44 Identities=30% Similarity=0.764 Sum_probs=29.8
Q ss_pred ccccccccccccCCCceeEcCCCCCcchHHhHHHHHhc----CCCccccccc
Q 036506 9 YCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQS----RSTCPLCRIE 56 (86)
Q Consensus 9 ~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~----~~~CP~Cr~~ 56 (86)
+..|.+|... ++ +.....|...||..|+.+=+.. .-.||.|+..
T Consensus 2 ~~~C~~C~~~---g~-ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKP---GD-LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCC---SS-CCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCC---Cc-eeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 4578999854 22 2333458899999999764443 2269999865
No 130
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=79.69 E-value=0.23 Score=27.27 Aligned_cols=50 Identities=20% Similarity=0.465 Sum_probs=34.4
Q ss_pred cccccccccccccC-CCceeEcCCCCCcchHHhHHHHHhc--------CCCcccccccc
Q 036506 8 YYCYCTVCLDGISD-GQKFRRLPECKHCFHVECIDAWFQS--------RSTCPLCRIEV 57 (86)
Q Consensus 8 ~~~~C~ICl~~~~~-~~~~~~~~~C~H~fh~~Ci~~wl~~--------~~~CP~Cr~~~ 57 (86)
.+..|.||...-.. ...+.....|...||..|+.+-+.. .=.|+.|+...
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~ 73 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQM 73 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHH
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchh
Confidence 45679999986332 2445555679999999999875431 23699997644
No 131
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=79.41 E-value=2.4 Score=29.20 Aligned_cols=49 Identities=20% Similarity=0.431 Sum_probs=31.6
Q ss_pred cccccccccccccCCCceeEcCCCCCc--chHHhHHHHHhcC--CCccccccccch
Q 036506 8 YYCYCTVCLDGISDGQKFRRLPECKHC--FHVECIDAWFQSR--STCPLCRIEVAI 59 (86)
Q Consensus 8 ~~~~C~ICl~~~~~~~~~~~~~~C~H~--fh~~Ci~~wl~~~--~~CP~Cr~~~~~ 59 (86)
-.+.|||=+..+..| ++-.. |.|. |-..=+.....+. -.||+|...+..
T Consensus 248 vSL~CPlS~~ri~~P--vRg~~-C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~ 300 (371)
T 3i2d_A 248 MSLQCPISYTRMKYP--SKSIN-CKHLQCFDALWFLHSQLQIPTWQCPVCQIDIAL 300 (371)
T ss_dssp EESBCTTTSSBCSSE--EEETT-CCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCG
T ss_pred EeecCCCcccccccc--CcCCc-CCCcceECHHHHHHHhhcCCceeCCCCCcccCH
Confidence 356788888887755 44554 9998 5444444443333 369999887644
No 132
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=79.34 E-value=2.4 Score=29.08 Aligned_cols=48 Identities=19% Similarity=0.366 Sum_probs=31.8
Q ss_pred ccccccccccccCCCceeEcCCCCCc--chHHhHHHHHhcC--CCccccccccch
Q 036506 9 YCYCTVCLDGISDGQKFRRLPECKHC--FHVECIDAWFQSR--STCPLCRIEVAI 59 (86)
Q Consensus 9 ~~~C~ICl~~~~~~~~~~~~~~C~H~--fh~~Ci~~wl~~~--~~CP~Cr~~~~~ 59 (86)
.+.|||=+..+..| ++-.. |.|. |-..=+.....+. -.||+|...+..
T Consensus 215 SL~CPlS~~ri~~P--~Rg~~-C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~ 266 (360)
T 4fo9_A 215 SLMCPLGKMRLTIP--CRAVT-CTHLQCFDAALYLQMNEKKPTWICPVCDKKAAY 266 (360)
T ss_dssp ESBCTTTCSBCSSE--EEETT-CCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCG
T ss_pred eeeCCCccceeccC--CcCCC-CCCCccCCHHHHHHHHhhCCCeECCCCCcccCH
Confidence 46788888887755 44554 9998 5554444444433 369999887654
No 133
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=78.60 E-value=0.3 Score=25.67 Aligned_cols=44 Identities=34% Similarity=0.647 Sum_probs=27.3
Q ss_pred ccccccccccCCCceeEcCCCCCcchHHhHHHHHhc-----CCCcccccc
Q 036506 11 YCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQS-----RSTCPLCRI 55 (86)
Q Consensus 11 ~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~-----~~~CP~Cr~ 55 (86)
.|.||...- ++..+.....|...||..|+.+=|.. .=.||.|+.
T Consensus 20 ~C~~C~~~~-~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCS-CGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcC-CCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 456666542 22344455568999999999864443 125888864
No 134
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=78.35 E-value=1.6 Score=26.32 Aligned_cols=50 Identities=18% Similarity=0.539 Sum_probs=32.7
Q ss_pred CCcccccccccccccCCCceeEcCCCCCcchHHhHHHHH-----hcCCCccccccc
Q 036506 6 CPYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWF-----QSRSTCPLCRIE 56 (86)
Q Consensus 6 ~~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl-----~~~~~CP~Cr~~ 56 (86)
..+...| +|...............|...||..|+.--. ...-.||.|+..
T Consensus 5 ~~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 5 SDTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp --CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 3566788 9998765444444455699999999994211 124479999763
No 135
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=77.53 E-value=1.7 Score=22.16 Aligned_cols=43 Identities=26% Similarity=0.566 Sum_probs=28.8
Q ss_pred cccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCcccc
Q 036506 10 CYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLC 53 (86)
Q Consensus 10 ~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~C 53 (86)
..|--|...|.+. .....+.|++.||.+|=.=--+.-..||-|
T Consensus 16 ~~C~~C~~~~~~~-~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQ-HVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTS-EEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCC-ccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 4588899888543 224566799999999953222334578877
No 136
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=77.00 E-value=0.86 Score=25.70 Aligned_cols=43 Identities=16% Similarity=0.478 Sum_probs=26.5
Q ss_pred ccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCccccccccchh
Q 036506 9 YCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVAIV 60 (86)
Q Consensus 9 ~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 60 (86)
+..||+|..++...........|.-.| .....||.|..++..-
T Consensus 32 ~~~CP~Cq~eL~~~g~~~hC~~C~~~f---------~~~a~CPdC~q~LevL 74 (101)
T 2jne_A 32 ELHCPQCQHVLDQDNGHARCRSCGEFI---------EMKALCPDCHQPLQVL 74 (101)
T ss_dssp CCBCSSSCSBEEEETTEEEETTTCCEE---------EEEEECTTTCSBCEEE
T ss_pred cccCccCCCcceecCCEEECccccchh---------hccccCcchhhHHHHH
Confidence 368999998875432222233344432 4456799999887653
No 137
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=76.88 E-value=1.2 Score=23.15 Aligned_cols=49 Identities=22% Similarity=0.367 Sum_probs=31.8
Q ss_pred CcccccccccccccCCCceeEcCCCCCcchHHhHHHHH----hcCCCccccccc
Q 036506 7 PYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWF----QSRSTCPLCRIE 56 (86)
Q Consensus 7 ~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl----~~~~~CP~Cr~~ 56 (86)
.+...| ||......+...+....|..-||..|+.--. ...-.||.|+..
T Consensus 14 ~~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 14 NWKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp SSEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred CcceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 456678 7988765554344444689999999985421 123469999653
No 138
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.34 E-value=1.7 Score=22.75 Aligned_cols=48 Identities=21% Similarity=0.440 Sum_probs=26.7
Q ss_pred CcccccccccccccCCCceeEcCCCC---CcchHHhHHHHHh--cCCCcccccccc
Q 036506 7 PYYCYCTVCLDGISDGQKFRRLPECK---HCFHVECIDAWFQ--SRSTCPLCRIEV 57 (86)
Q Consensus 7 ~~~~~C~ICl~~~~~~~~~~~~~~C~---H~fh~~Ci~~wl~--~~~~CP~Cr~~~ 57 (86)
.+...| ||.... .+..|. ...|. .-||..|+.---. ..-.||.|+...
T Consensus 4 ~~~~yC-~C~~~~-~g~MI~-CD~cdC~~~WfH~~Cvgl~~~p~~~w~Cp~C~~~~ 56 (70)
T 1x4i_A 4 GSSGYC-ICNQVS-YGEMVG-CDNQDCPIEWFHYGCVGLTEAPKGKWYCPQCTAAM 56 (70)
T ss_dssp SCCCCS-TTSCCC-CSSEEC-CSCTTCSCCCEEHHHHTCSSCCSSCCCCHHHHHHH
T ss_pred CCCeEE-EcCCCC-CCCEeE-eCCCCCCccCCcccccccCcCCCCCEECCCCCccc
Confidence 344555 587763 333332 22342 6899999962111 133699997654
No 139
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=76.21 E-value=0.97 Score=23.10 Aligned_cols=45 Identities=27% Similarity=0.611 Sum_probs=26.6
Q ss_pred CCcccccccccccccCCCceeEcCC--CC-CcchHHhHHHHHhc----CCCcccccc
Q 036506 6 CPYYCYCTVCLDGISDGQKFRRLPE--CK-HCFHVECIDAWFQS----RSTCPLCRI 55 (86)
Q Consensus 6 ~~~~~~C~ICl~~~~~~~~~~~~~~--C~-H~fh~~Ci~~wl~~----~~~CP~Cr~ 55 (86)
..+...| ||.... .+. ++.... |. .-||..|+. |.. .-.||.|+.
T Consensus 8 ~~e~~yC-~C~~~~-~g~-MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 8 PNEPTYC-LCNQVS-YGE-MIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp --CCEET-TTTEEC-CSE-EEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CCCCcEE-ECCCCC-CCC-eeeeeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence 3455667 898863 333 333334 44 789999997 232 236888864
No 140
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.19 E-value=0.37 Score=25.82 Aligned_cols=44 Identities=23% Similarity=0.529 Sum_probs=27.9
Q ss_pred ccccccccccCCCceeEcCCCCCcchHHhHHHHHhc-----CCCcccccc
Q 036506 11 YCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQS-----RSTCPLCRI 55 (86)
Q Consensus 11 ~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~-----~~~CP~Cr~ 55 (86)
.|.||...-. +..+.....|...||..|+.+=|.. .=.||.|..
T Consensus 28 ~C~vC~~~~~-~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHE-PNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCC-STTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCC-CCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 6777876422 3344455568999999999864433 125777753
No 141
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=74.57 E-value=1.4 Score=23.95 Aligned_cols=41 Identities=22% Similarity=0.564 Sum_probs=24.7
Q ss_pred cccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCccccccccch
Q 036506 10 CYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVAI 59 (86)
Q Consensus 10 ~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 59 (86)
..||.|..++...........|+-.| .....||-|..++..
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~~C~~~~---------~~~afCPeCgq~Le~ 43 (81)
T 2jrp_A 3 ITCPVCHHALERNGDTAHCETCAKDF---------SLQALCPDCRQPLQV 43 (81)
T ss_dssp CCCSSSCSCCEECSSEEECTTTCCEE---------EEEEECSSSCSCCCE
T ss_pred CCCCCCCCccccCCCceECccccccC---------CCcccCcchhhHHHH
Confidence 67999998876544333333444432 234478888877644
No 142
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=74.21 E-value=4.3 Score=24.73 Aligned_cols=37 Identities=35% Similarity=0.811 Sum_probs=26.4
Q ss_pred CCcccccccccccccCCCceeEcC--CCCCcchHHhHHHHHhc
Q 036506 6 CPYYCYCTVCLDGISDGQKFRRLP--ECKHCFHVECIDAWFQS 46 (86)
Q Consensus 6 ~~~~~~C~ICl~~~~~~~~~~~~~--~C~H~fh~~Ci~~wl~~ 46 (86)
.-++..|.||-+. ..+.... .|...||..||..++..
T Consensus 76 DG~~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG~ 114 (159)
T 3a1b_A 76 DGYQSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVGP 114 (159)
T ss_dssp TSSBSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTCT
T ss_pred CCCcceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcCH
Confidence 4467789999864 3333333 48899999999998754
No 143
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=72.49 E-value=2.1 Score=25.28 Aligned_cols=50 Identities=16% Similarity=0.275 Sum_probs=31.3
Q ss_pred Cccccccccccccc-CCCceeEcCCCCCcchHHhHHHHHhc-C---CCccccccc
Q 036506 7 PYYCYCTVCLDGIS-DGQKFRRLPECKHCFHVECIDAWFQS-R---STCPLCRIE 56 (86)
Q Consensus 7 ~~~~~C~ICl~~~~-~~~~~~~~~~C~H~fh~~Ci~~wl~~-~---~~CP~Cr~~ 56 (86)
..+..|.+|...|. ....-.....|.|.+|..|-..-..+ + =.|-+|+..
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQ 107 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHHH
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHHH
Confidence 45678999999983 22222344469999999986532111 1 148788654
No 144
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=71.03 E-value=2.1 Score=22.00 Aligned_cols=43 Identities=16% Similarity=0.339 Sum_probs=30.8
Q ss_pred CCcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCccccccccch
Q 036506 6 CPYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVAI 59 (86)
Q Consensus 6 ~~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 59 (86)
+.....|+.|-..+...+.+.. -+..||..|+ .|-.|+..|..
T Consensus 6 ~~~~~~C~~C~~~I~~~~~v~a---~~~~~H~~CF--------~C~~C~~~L~~ 48 (76)
T 2cu8_A 6 SGMASKCPKCDKTVYFAEKVSS---LGKDWHKFCL--------KCERCSKTLTP 48 (76)
T ss_dssp CCCCCBCTTTCCBCCTTTEEEE---TTEEEETTTC--------BCSSSCCBCCT
T ss_pred CCCCCCCcCCCCEeECCeEEEE---CCeEeeCCCC--------CCCCCCCccCC
Confidence 3455689999999886554432 5778998775 68888887753
No 145
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=69.59 E-value=1.9 Score=22.40 Aligned_cols=41 Identities=22% Similarity=0.333 Sum_probs=29.0
Q ss_pred CCcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCccccccccc
Q 036506 6 CPYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVA 58 (86)
Q Consensus 6 ~~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 58 (86)
......|.-|-..+... . +. .-+..||..|+ .|-.|+..|.
T Consensus 12 ~~~~~~C~~C~~~I~~~-~--~~-a~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 1x62_A 12 AQKLPMCDKCGTGIVGV-F--VK-LRDRHRHPECY--------VCTDCGTNLK 52 (79)
T ss_dssp CCCCCCCSSSCCCCCSS-C--EE-CSSCEECTTTT--------SCSSSCCCHH
T ss_pred CCCCCccccCCCCccCc-E--EE-ECcceeCcCcC--------eeCCCCCCCC
Confidence 34557899999988753 2 22 26788998886 6888877664
No 146
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=68.83 E-value=3 Score=21.09 Aligned_cols=41 Identities=22% Similarity=0.455 Sum_probs=26.7
Q ss_pred cccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCccccccccc
Q 036506 8 YYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVA 58 (86)
Q Consensus 8 ~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 58 (86)
....|..|-..+...+.++. . =+..||..|+ .|-.|+..|.
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~-a-~~~~~H~~CF--------~C~~C~~~L~ 44 (72)
T 1x61_A 4 GSSGCGGCGEDVVGDGAGVV-A-LDRVFHVGCF--------VCSTCRAQLR 44 (72)
T ss_dssp CCCCCSSSCSCCCSSSCCEE-C-SSSEECTTTC--------BCSSSCCBCT
T ss_pred CCCCCccCCCccCCCceEEE-E-CCCeEcccCC--------cccccCCcCC
Confidence 44678888887765332222 2 5778888775 5778877663
No 147
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=68.53 E-value=3.2 Score=20.92 Aligned_cols=41 Identities=17% Similarity=0.389 Sum_probs=27.8
Q ss_pred cccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCccccccccc
Q 036506 8 YYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVA 58 (86)
Q Consensus 8 ~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 58 (86)
....|.-|-..+...+.+ +. .-+..||..|+ .|-.|+..|.
T Consensus 4 ~~~~C~~C~~~I~~~~~~-~~-a~~~~~H~~CF--------~C~~C~~~L~ 44 (72)
T 1wyh_A 4 GSSGCSACGETVMPGSRK-LE-YGGQTWHEHCF--------LCSGCEQPLG 44 (72)
T ss_dssp CCCBCSSSCCBCCSSSCE-EC-STTCCEETTTC--------BCTTTCCBTT
T ss_pred cCCCCccCCCccccCccE-EE-ECccccCcccC--------eECCCCCcCC
Confidence 345788999988754332 22 26788998775 6778877664
No 148
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=68.14 E-value=0.27 Score=25.16 Aligned_cols=36 Identities=22% Similarity=0.479 Sum_probs=22.4
Q ss_pred cccccccccccCCCceeEcC--C--CCCcchHHhHHHHHh
Q 036506 10 CYCTVCLDGISDGQKFRRLP--E--CKHCFHVECIDAWFQ 45 (86)
Q Consensus 10 ~~C~ICl~~~~~~~~~~~~~--~--C~H~fh~~Ci~~wl~ 45 (86)
-.||-|...++..+....+. . |++.|+..|..+|..
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~ 46 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEP 46 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCccc
Confidence 46888888877654322221 2 667777777766654
No 149
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=67.17 E-value=2.8 Score=21.71 Aligned_cols=47 Identities=19% Similarity=0.463 Sum_probs=30.0
Q ss_pred CcccccccccccccCCCceeEcCCCCCcchHHhHHHHHh---cCCCcccccc
Q 036506 7 PYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQ---SRSTCPLCRI 55 (86)
Q Consensus 7 ~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~---~~~~CP~Cr~ 55 (86)
.+...| ||...... ...+....|..-||..|+.--.. ..-.||.|+.
T Consensus 17 ~~~~~C-iC~~~~~~-~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFAG-RPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCTT-CCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCceEe-ECCCcCCC-CCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 556677 99887553 33334445999999999854221 1336888864
No 150
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=67.09 E-value=1.1 Score=28.93 Aligned_cols=44 Identities=32% Similarity=0.615 Sum_probs=25.6
Q ss_pred ccccccccccCCCceeEcCCCCCcchHHhHHHHHhc---C--CCcccccc
Q 036506 11 YCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQS---R--STCPLCRI 55 (86)
Q Consensus 11 ~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~---~--~~CP~Cr~ 55 (86)
.|.+|...-. +..+.....|...||..|+.+=|.. . =.||.|+.
T Consensus 176 ~C~vC~~~~~-~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCCC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCCCCC-CCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 5777776422 2333444569999999999865443 1 25999964
No 151
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=66.91 E-value=6.1 Score=27.40 Aligned_cols=36 Identities=28% Similarity=0.844 Sum_probs=26.4
Q ss_pred CCcccccccccccccCCCceeEcC--CCCCcchHHhHHHHHh
Q 036506 6 CPYYCYCTVCLDGISDGQKFRRLP--ECKHCFHVECIDAWFQ 45 (86)
Q Consensus 6 ~~~~~~C~ICl~~~~~~~~~~~~~--~C~H~fh~~Ci~~wl~ 45 (86)
.-++..|.+|-+. ..+.... .|...||..||...+.
T Consensus 90 DG~~~yCr~C~~G----g~l~~Cdn~~C~r~FC~~Ci~~n~g 127 (386)
T 2pv0_B 90 DGYQSYCSICCSG----ETLLICGNPDCTRCYCFECVDSLVG 127 (386)
T ss_dssp SSSBCSCTTTCCC----SSCEECCSTTCCCEECHHHHHHHTC
T ss_pred CCCcccceEcCCC----CeEEEeCCCCCCcchHHHHHHHhcC
Confidence 4567889998875 2233333 5889999999999884
No 152
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=66.70 E-value=4.3 Score=20.22 Aligned_cols=43 Identities=19% Similarity=0.465 Sum_probs=30.2
Q ss_pred CcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCccccccccch
Q 036506 7 PYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVAI 59 (86)
Q Consensus 7 ~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 59 (86)
.....|.-|...+...+.+... =+..||..|+ .|-.|...+..
T Consensus 9 ~~~~~C~~C~~~i~~~e~~~~~--~~~~~H~~CF--------~C~~C~~~L~~ 51 (72)
T 3f6q_B 9 SASATCERCKGGFAPAEKIVNS--NGELYHEQCF--------VCAQCFQQFPE 51 (72)
T ss_dssp CTTCBCTTTCCBCCTTCEEEEE--TTEEEETTTS--------SCTTTCCCCGG
T ss_pred cCCccchhcCccccCCceEEEe--CcCeeCcCCC--------cccCCCCCCCC
Confidence 3456899999988766544322 5678898886 68888877654
No 153
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=66.30 E-value=2.7 Score=21.22 Aligned_cols=40 Identities=20% Similarity=0.477 Sum_probs=27.2
Q ss_pred ccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCccccccccc
Q 036506 9 YCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVA 58 (86)
Q Consensus 9 ~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 58 (86)
...|+.|-..+...+.++.. =+..||..|+ .|-.|+..|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~ 44 (72)
T 1x4k_A 5 SSGCQECKKTIMPGTRKMEY--KGSSWHETCF--------ICHRCQQPIG 44 (72)
T ss_dssp CCCBSSSCCCCCSSSCEEEE--TTEEEETTTT--------CCSSSCCCCC
T ss_pred CCCCccCCCcccCCceEEEE--CcCeecccCC--------cccccCCccC
Confidence 35788999988765433322 5678888775 5778877664
No 154
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=65.23 E-value=3.9 Score=20.67 Aligned_cols=41 Identities=24% Similarity=0.546 Sum_probs=27.8
Q ss_pred cccccccccccccC--CCceeEcCCCCCcchHHhHHHHHhcCCCccccccccc
Q 036506 8 YYCYCTVCLDGISD--GQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVA 58 (86)
Q Consensus 8 ~~~~C~ICl~~~~~--~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 58 (86)
....|.-|-..+.. ...+ +. .-+..||..|+ .|-.|+..|.
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~-~~-a~~~~wH~~CF--------~C~~C~~~L~ 46 (72)
T 1x4l_A 4 GSSGCAGCTNPISGLGGTKY-IS-FEERQWHNDCF--------NCKKCSLSLV 46 (72)
T ss_dssp CSCSBTTTTBCCCCSSSCSC-EE-CSSCEECTTTC--------BCSSSCCBCT
T ss_pred CCCCCcCCCccccCCCCcce-EE-ECCcccCcccC--------EeccCCCcCC
Confidence 45678999998875 2222 22 26788998875 6888887764
No 155
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=64.86 E-value=1.8 Score=18.82 Aligned_cols=28 Identities=18% Similarity=0.314 Sum_probs=17.3
Q ss_pred cccccccccccCCCceeEcCCCCCcchHHhH
Q 036506 10 CYCTVCLDGISDGQKFRRLPECKHCFHVECI 40 (86)
Q Consensus 10 ~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci 40 (86)
..|+.|-..+-..+.+ . .=|..||..|+
T Consensus 4 ~~C~~C~k~Vy~~Ek~--~-~~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKV--N-CLDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCC--C-SSSSCCCGGGC
T ss_pred CcCCccCCEEecceeE--E-ECCeEecccCC
Confidence 4678888766544332 2 25778888773
No 156
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=63.75 E-value=1.9 Score=22.16 Aligned_cols=37 Identities=16% Similarity=0.471 Sum_probs=20.9
Q ss_pred ccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCccccccccc
Q 036506 11 YCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVA 58 (86)
Q Consensus 11 ~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 58 (86)
.|+.|-..+..++.+.. -+..||..|+ .|-.|+..|.
T Consensus 2 ~C~~C~~~I~~~~~v~a---~~~~~H~~CF--------~C~~C~~~L~ 38 (76)
T 1iml_A 2 KCPKCDKEVYFAERVTS---LGKDWHRPCL--------KCEKCGKTLT 38 (76)
T ss_dssp BCTTTSSBCCGGGEEEE---TTEEEETTTC--------BCTTTCCBCC
T ss_pred cCCCCCCEEECceEEEE---CCccccCCCC--------CccccCccCC
Confidence 36667676654433321 3667776664 4666666554
No 157
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=63.36 E-value=5.2 Score=20.85 Aligned_cols=34 Identities=15% Similarity=0.444 Sum_probs=24.5
Q ss_pred CCCcccccccccccccCCCceeEcCCC-CCcchHHhHHHH
Q 036506 5 KCPYYCYCTVCLDGISDGQKFRRLPEC-KHCFHVECIDAW 43 (86)
Q Consensus 5 ~~~~~~~C~ICl~~~~~~~~~~~~~~C-~H~fh~~Ci~~w 43 (86)
..++..-|.||.++ ..++-+. | +-.||..|+...
T Consensus 4 ~~ee~pWC~ICneD----AtlrC~g-CdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 4 GSSGLPWCCICNED----ATLRCAG-CDGDLYCARCFREG 38 (67)
T ss_dssp SCCCCSSCTTTCSC----CCEEETT-TTSEEECSSHHHHH
T ss_pred cCcCCCeeEEeCCC----CeEEecC-CCCceehHHHHHHH
Confidence 34566779999988 3345665 8 789999997653
No 158
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=62.94 E-value=3.8 Score=21.24 Aligned_cols=41 Identities=22% Similarity=0.519 Sum_probs=27.8
Q ss_pred ccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCccccccccch
Q 036506 9 YCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVAI 59 (86)
Q Consensus 9 ~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 59 (86)
...|+.|-..+...+.++. .=+..||..|+ .|-.|+..|..
T Consensus 15 ~~~C~~C~~~I~~~~~~~~--a~~~~~H~~CF--------~C~~C~~~L~~ 55 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNVE--YKGTVWHKDCF--------TCSNCKQVIGT 55 (82)
T ss_dssp SCBCSSSCCBCCSSSCEEE--CSSCEEETTTC--------CCSSSCCCCTT
T ss_pred CCcCccCCcccccCceEEE--ECccccccccC--------chhhCCCccCC
Confidence 3578888888876544322 25778898775 67788776643
No 159
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=62.73 E-value=5.2 Score=24.08 Aligned_cols=47 Identities=19% Similarity=0.411 Sum_probs=31.1
Q ss_pred cccccccccccccC--CCceeEcCCCCCcchHHhHHHHHhcCC--Cccccccc
Q 036506 8 YYCYCTVCLDGISD--GQKFRRLPECKHCFHVECIDAWFQSRS--TCPLCRIE 56 (86)
Q Consensus 8 ~~~~C~ICl~~~~~--~~~~~~~~~C~H~fh~~Ci~~wl~~~~--~CP~Cr~~ 56 (86)
.+..|.+|...|.- +.. .....|+|.+|..|-. |+.... .|-+|+..
T Consensus 67 ~~~~C~~C~~~fg~l~~~g-~~C~~C~~~VC~~C~~-~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSR-RQCLECSLFVCKSCSH-AHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCC-EECTTTCCEECGGGEE-CCSSSSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCC-CcCCCCCchhhccccc-ccCCCCcEeeHHHHHH
Confidence 57899999998642 223 3444699999999972 333222 47778654
No 160
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=62.68 E-value=3.3 Score=21.24 Aligned_cols=49 Identities=18% Similarity=0.408 Sum_probs=29.0
Q ss_pred CCcccccccccccccCCCceeEc-CCCCCcchHHhHHHHH---h-----cCCCcccccc
Q 036506 6 CPYYCYCTVCLDGISDGQKFRRL-PECKHCFHVECIDAWF---Q-----SRSTCPLCRI 55 (86)
Q Consensus 6 ~~~~~~C~ICl~~~~~~~~~~~~-~~C~H~fh~~Ci~~wl---~-----~~~~CP~Cr~ 55 (86)
..+...| ||......+..|.-- ..|..-||..|+.--- . .+-.||.||.
T Consensus 7 ~e~~v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 7 PEAKVRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp SSCEECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CCCCEEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 3455677 797765555433321 1388899999973210 1 1346999974
No 161
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=61.53 E-value=1.7 Score=29.67 Aligned_cols=49 Identities=16% Similarity=0.221 Sum_probs=0.0
Q ss_pred cccccccccccccCCCceeEcCCCCCcchHHhHHHHHhc-------CCCccccccc
Q 036506 8 YYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQS-------RSTCPLCRIE 56 (86)
Q Consensus 8 ~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~-------~~~CP~Cr~~ 56 (86)
+...|.+|...|..-..--....||++||..|....+.. .+.|-.|-..
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~ 429 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGE 429 (434)
T ss_dssp --------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHH
Confidence 346799999988643221223359999999998765421 2356666443
No 162
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=60.01 E-value=1.3 Score=25.23 Aligned_cols=25 Identities=32% Similarity=0.602 Sum_probs=16.2
Q ss_pred CCCCcchHHhHHHHHhcCCCccccccccch
Q 036506 30 ECKHCFHVECIDAWFQSRSTCPLCRIEVAI 59 (86)
Q Consensus 30 ~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 59 (86)
.||+.|. .-+.....||.|+.....
T Consensus 72 ~CG~~F~-----~~~~kPsrCP~CkSe~Ie 96 (105)
T 2gmg_A 72 KCGFVFK-----AEINIPSRCPKCKSEWIE 96 (105)
T ss_dssp TTCCBCC-----CCSSCCSSCSSSCCCCBC
T ss_pred hCcCeec-----ccCCCCCCCcCCCCCccC
Confidence 5999981 112235679999987543
No 163
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=59.11 E-value=1.4 Score=21.43 Aligned_cols=41 Identities=20% Similarity=0.445 Sum_probs=24.9
Q ss_pred cccccccCCCceeEcCCCCCcchHHhHHHHHh---cCCCcccccc
Q 036506 14 VCLDGISDGQKFRRLPECKHCFHVECIDAWFQ---SRSTCPLCRI 55 (86)
Q Consensus 14 ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~---~~~~CP~Cr~ 55 (86)
||......... +....|+.-||..|+.--.. ..-.||.|+.
T Consensus 8 ~C~~~~~~~~M-I~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFAGRPM-IECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCTTCCE-EECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCCCCCE-EEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 67766443233 34445899999999853221 2346888864
No 164
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=57.57 E-value=4.2 Score=21.25 Aligned_cols=41 Identities=24% Similarity=0.571 Sum_probs=29.0
Q ss_pred CcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCccccccccc
Q 036506 7 PYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVA 58 (86)
Q Consensus 7 ~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 58 (86)
.....|+-|-..+...+.+.. -+..||..|+ .|-.|+..|.
T Consensus 13 ~~~~~C~~C~~~I~~~~~v~a---~~~~wH~~CF--------~C~~C~~~L~ 53 (80)
T 2dj7_A 13 RGPSHCAGCKEEIKHGQSLLA---LDKQWHVSCF--------KCQTCSVILT 53 (80)
T ss_dssp SSCSCCTTTCCCCSSSCCEEE---TTEEECTTTC--------BCSSSCCBCS
T ss_pred CCCCCCcCcCCeeCCCeEEEE---CCcccccccC--------CcCcCCCCcC
Confidence 345679999998876554432 4678888775 6888887664
No 165
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=57.21 E-value=4.9 Score=21.29 Aligned_cols=40 Identities=23% Similarity=0.473 Sum_probs=28.0
Q ss_pred CcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCccccccccc
Q 036506 7 PYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVA 58 (86)
Q Consensus 7 ~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 58 (86)
.....|.-|-..+... . +. .-+..||..|+ .|-.|+..|.
T Consensus 23 ~~~~~C~~C~~~I~~~-~--~~-a~~~~~H~~CF--------~C~~C~~~L~ 62 (89)
T 1x64_A 23 QRMPLCDKCGSGIVGA-V--VK-ARDKYRHPECF--------VCADCNLNLK 62 (89)
T ss_dssp CSCCBCTTTCCBCCSC-C--EE-SSSCEECTTTC--------CCSSSCCCTT
T ss_pred CcCCCcccCCCEeccc-E--EE-ECCceECccCC--------EecCCCCCCC
Confidence 4456799999988752 2 22 26788998885 5888877764
No 166
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=57.17 E-value=0.57 Score=25.10 Aligned_cols=14 Identities=36% Similarity=0.854 Sum_probs=12.3
Q ss_pred CCCCcchHHhHHHH
Q 036506 30 ECKHCFHVECIDAW 43 (86)
Q Consensus 30 ~C~H~fh~~Ci~~w 43 (86)
.|++.||..|...|
T Consensus 55 ~C~~~FC~~C~~~w 68 (80)
T 2jmo_A 55 GCGFAFCRECKEAY 68 (80)
T ss_dssp CCSCCEETTTTEEC
T ss_pred CCCCeeccccCccc
Confidence 59999999998776
No 167
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=57.01 E-value=5.4 Score=20.38 Aligned_cols=40 Identities=30% Similarity=0.613 Sum_probs=26.9
Q ss_pred ccccccccccccC--CCceeEcCCCCCcchHHhHHHHHhcCCCccccccccc
Q 036506 9 YCYCTVCLDGISD--GQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVA 58 (86)
Q Consensus 9 ~~~C~ICl~~~~~--~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 58 (86)
...|+.|-..+.. ....+. .-+..||..|+ .|-.|+..|.
T Consensus 5 ~~~C~~C~~~I~~~g~~~~~~--a~~~~wH~~CF--------~C~~C~~~L~ 46 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKFIC--FQDSQWHSECF--------NCGKCSVSLV 46 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCEEE--ETTEEEEGGGC--------BCTTTCCBCS
T ss_pred CCCCccCCCcccCCCCceeEE--ECCcccCcccC--------ChhhCCCcCC
Confidence 3568889888774 222222 25778998886 6888877764
No 168
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=56.54 E-value=4.5 Score=20.01 Aligned_cols=38 Identities=24% Similarity=0.431 Sum_probs=26.5
Q ss_pred ccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCccccccccc
Q 036506 9 YCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVA 58 (86)
Q Consensus 9 ~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 58 (86)
...|+.|-..+. +.. +. .=+..||..|+ .|-.|+..+.
T Consensus 5 ~~~C~~C~~~I~-~~~--~~-a~~~~~H~~CF--------~C~~C~~~L~ 42 (66)
T 1nyp_A 5 VPICGACRRPIE-GRV--VN-AMGKQWHVEHF--------VCAKCEKPFL 42 (66)
T ss_dssp CCEETTTTEECC-SCE--EC-CTTSBEETTTC--------BCTTTCCBCS
T ss_pred CCCCcccCCEec-ceE--EE-ECccccccCcC--------EECCCCCCCC
Confidence 457888988887 332 22 36788998775 6888887764
No 169
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.82 E-value=5.6 Score=19.87 Aligned_cols=38 Identities=26% Similarity=0.594 Sum_probs=26.4
Q ss_pred ccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCccccccccc
Q 036506 9 YCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVA 58 (86)
Q Consensus 9 ~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 58 (86)
...|..|-..+... . +. .-+..||..|+ .|-.|+..|.
T Consensus 5 ~~~C~~C~~~I~~~-~--~~-a~~~~~H~~CF--------~C~~C~~~L~ 42 (70)
T 2d8z_A 5 SSGCVQCKKPITTG-G--VT-YREQPWHKECF--------VCTACRKQLS 42 (70)
T ss_dssp CCBCSSSCCBCCSS-E--EE-SSSSEEETTTS--------BCSSSCCBCT
T ss_pred CCCCcccCCeeccc-e--EE-ECccccCCCCC--------ccCCCCCcCC
Confidence 45688898888643 2 22 26788998775 6888887764
No 170
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=54.78 E-value=0.79 Score=24.78 Aligned_cols=41 Identities=27% Similarity=0.600 Sum_probs=25.0
Q ss_pred cccccccccC--CCceeEcCCCCCcchHHhHHHHHhcCC--Cccc
Q 036506 12 CTVCLDGISD--GQKFRRLPECKHCFHVECIDAWFQSRS--TCPL 52 (86)
Q Consensus 12 C~ICl~~~~~--~~~~~~~~~C~H~fh~~Ci~~wl~~~~--~CP~ 52 (86)
||-|-..+.. ....+..+.|++.||..|-.+|-.+|. +|..
T Consensus 28 CP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w~~~H~~~sC~~ 72 (86)
T 2ct7_A 28 CAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQWEEQHRGRSCED 72 (86)
T ss_dssp CSSSCCCEECCCSCSCEECTTTCCEECSSSCSBCCTTTTTSCHHH
T ss_pred CcCCCchheecCCCCceEeCCCCCccccccCCchhhcCCCCChHH
Confidence 6655553321 122245656999999999988855443 4543
No 171
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.67 E-value=9.9 Score=19.63 Aligned_cols=41 Identities=20% Similarity=0.310 Sum_probs=27.8
Q ss_pred CcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCccccccccch
Q 036506 7 PYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVAI 59 (86)
Q Consensus 7 ~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 59 (86)
.....|+-|-..+... . +..-+..||..|+ .|-.|+..|..
T Consensus 13 ~~~~~C~~C~~~I~~~-~---v~a~~~~~H~~CF--------~C~~C~~~L~~ 53 (79)
T 2cor_A 13 LGKYICQKCHAIIDEQ-P---LIFKNDPYHPDHF--------NCANCGKELTA 53 (79)
T ss_dssp CCCCBCTTTCCBCCSC-C---CCCSSSCCCTTTS--------BCSSSCCBCCT
T ss_pred cCCCCCccCCCEecce-E---EEECcceeCCCCC--------EeCCCCCccCC
Confidence 3445788898887732 2 2236778888775 68888877753
No 172
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=53.98 E-value=3.3 Score=17.89 Aligned_cols=12 Identities=25% Similarity=0.675 Sum_probs=8.3
Q ss_pred CCccccccccch
Q 036506 48 STCPLCRIEVAI 59 (86)
Q Consensus 48 ~~CP~Cr~~~~~ 59 (86)
..||+|+..++.
T Consensus 4 ~~CpvCk~q~Pd 15 (28)
T 2jvx_A 4 FCCPKCQYQAPD 15 (28)
T ss_dssp EECTTSSCEESS
T ss_pred ccCccccccCcC
Confidence 368888876653
No 173
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=53.87 E-value=17 Score=18.83 Aligned_cols=48 Identities=25% Similarity=0.470 Sum_probs=30.2
Q ss_pred cccccccccccccCCCceeEcCCCCCcchHHhHHHHHh-----cCCCccccccc
Q 036506 8 YYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQ-----SRSTCPLCRIE 56 (86)
Q Consensus 8 ~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~-----~~~~CP~Cr~~ 56 (86)
+...| ||...+......+....|.--||..|+.--.. ..-.||.|+..
T Consensus 9 ~~~yC-iC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 9 VPVYC-VCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred CeeEE-ECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence 33444 88887654333444446999999999953221 23469999754
No 174
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=53.74 E-value=7.4 Score=19.82 Aligned_cols=38 Identities=24% Similarity=0.440 Sum_probs=25.2
Q ss_pred ccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCccccccccc
Q 036506 9 YCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVA 58 (86)
Q Consensus 9 ~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 58 (86)
...|+-|-..+... .+..-+..||..|+ .|-.|...|.
T Consensus 5 ~~~C~~C~~~I~~~----~v~a~~~~wH~~CF--------~C~~C~~~L~ 42 (73)
T 1wig_A 5 SSGCDSCEKYITGR----VLEAGEKHYHPSCA--------LCVRCGQMFA 42 (73)
T ss_dssp CCSCSSSCCCCSSC----CBCCSSCCBCTTTS--------CCSSSCCCCC
T ss_pred cCCcccCCCEecCe----eEEeCCCCCCCCcC--------EeCCCCCCCC
Confidence 45688888887652 22236778888775 5777776664
No 175
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=53.38 E-value=5 Score=22.04 Aligned_cols=46 Identities=20% Similarity=0.454 Sum_probs=27.0
Q ss_pred CCCcccccccccccccCCCceeEcCCCC---CcchHHhHHHHHhc----CCCccc-ccc
Q 036506 5 KCPYYCYCTVCLDGISDGQKFRRLPECK---HCFHVECIDAWFQS----RSTCPL-CRI 55 (86)
Q Consensus 5 ~~~~~~~C~ICl~~~~~~~~~~~~~~C~---H~fh~~Ci~~wl~~----~~~CP~-Cr~ 55 (86)
+..+...| ||..... +.. +....|. .-||..|+. |.. .-.||. |+.
T Consensus 22 ~~~~~~yC-iC~~~~~-g~M-I~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 22 NNQEEVYC-FCRNVSY-GPM-VACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp --CCSCCS-TTTCCCS-SSE-ECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred CCCCCcEE-EeCCCCC-CCE-EEecCCCCccccCcCccCC--CCcCCCCCccCChhhcc
Confidence 33556677 9987532 332 2233344 689999985 232 336999 864
No 176
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=53.10 E-value=6.9 Score=20.42 Aligned_cols=42 Identities=19% Similarity=0.388 Sum_probs=28.9
Q ss_pred CcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCccccccccch
Q 036506 7 PYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVAI 59 (86)
Q Consensus 7 ~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 59 (86)
.....|..|-..+...+.+. .=+..||..|+ .|-.|+..|..
T Consensus 13 ~~~~~C~~C~~~I~~~e~v~---a~~~~wH~~CF--------~C~~C~~~L~~ 54 (82)
T 2co8_A 13 GAGDLCALCGEHLYVLERLC---VNGHFFHRSCF--------RCHTCEATLWP 54 (82)
T ss_dssp CSSCBCSSSCCBCCTTTBCC---BTTBCCBTTTC--------BCSSSCCBCCT
T ss_pred CCCCCCcccCCCcccceEEE---ECCCeeCCCcC--------EEcCCCCCcCC
Confidence 34567999999886554433 25778998885 67788777654
No 177
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=52.30 E-value=4.1 Score=21.67 Aligned_cols=39 Identities=21% Similarity=0.399 Sum_probs=26.8
Q ss_pred cccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCccccccccc
Q 036506 8 YYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVA 58 (86)
Q Consensus 8 ~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 58 (86)
....|+.|-..+.. ..+ . .-+..||..|+ .|-.|+..|.
T Consensus 24 ~~~~C~~C~~~I~~-~~v--~-a~~~~~H~~CF--------~C~~C~~~L~ 62 (90)
T 2dar_A 24 RTPMCAHCNQVIRG-PFL--V-ALGKSWHPEEF--------NCAHCKNTMA 62 (90)
T ss_dssp CCCBBSSSCCBCCS-CEE--E-ETTEEECTTTC--------BCSSSCCBCS
T ss_pred CCCCCccCCCEecc-eEE--E-ECCccccccCC--------ccCCCCCCCC
Confidence 44569999988853 222 2 26788998775 6888887765
No 178
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=52.07 E-value=10 Score=20.04 Aligned_cols=41 Identities=20% Similarity=0.608 Sum_probs=28.4
Q ss_pred cccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCccccccccch
Q 036506 8 YYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVAI 59 (86)
Q Consensus 8 ~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 59 (86)
....|.-|-..+...+.+ . .-+..||..|+ .|-.|...|..
T Consensus 14 ~~~~C~~C~~~I~~~~~v--~-a~~~~~H~~CF--------~C~~C~~~L~~ 54 (91)
T 2d8y_A 14 ARETCVECQKTVYPMERL--L-ANQQVFHISCF--------RCSYCNNKLSL 54 (91)
T ss_dssp SSCBCTTTCCBCCTTSEE--E-CSSSEEETTTC--------BCTTTCCBCCT
T ss_pred CCCcCccCCCccCCceeE--E-ECCCEECCCCC--------eeCCCCCCCCC
Confidence 456899999988765543 2 26788998875 56677666543
No 179
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=51.11 E-value=3.6 Score=20.66 Aligned_cols=40 Identities=25% Similarity=0.491 Sum_probs=26.3
Q ss_pred cccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCccccccccch
Q 036506 8 YYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVAI 59 (86)
Q Consensus 8 ~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 59 (86)
....|..|-..+.. ..+. .-+..||..|+ .|-.|+..|..
T Consensus 4 ~~~~C~~C~~~I~~-~~~~---a~~~~~H~~CF--------~C~~C~~~L~~ 43 (70)
T 2d8x_A 4 GSSGCHQCGEFIIG-RVIK---AMNNSWHPECF--------RCDLCQEVLAD 43 (70)
T ss_dssp CSSBCSSSCCBCCS-CCEE---ETTEEECTTTS--------BCSSSCCBCSS
T ss_pred CCCcCccCCCEecc-eEEE---ECcccccccCC--------EeCCCCCcCCC
Confidence 34578888888764 2222 25678888775 67778776643
No 180
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=49.44 E-value=15 Score=26.08 Aligned_cols=49 Identities=27% Similarity=0.532 Sum_probs=31.5
Q ss_pred CcccccccccccccCCCceeEcCCCCCcchHHhHHHHHh-----cCCCccccccc
Q 036506 7 PYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQ-----SRSTCPLCRIE 56 (86)
Q Consensus 7 ~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~-----~~~~CP~Cr~~ 56 (86)
.+...| ||..........+....|.--||..|+.---. ..-.||.|+..
T Consensus 35 ~~~~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 88 (488)
T 3kv5_D 35 PPPVYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVL 88 (488)
T ss_dssp CCCEET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHH
T ss_pred CCCeEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCC
Confidence 344556 89887653444444556999999999943221 12479999764
No 181
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.96 E-value=6.1 Score=19.68 Aligned_cols=39 Identities=21% Similarity=0.484 Sum_probs=26.4
Q ss_pred cccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCccccccccc
Q 036506 8 YYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVA 58 (86)
Q Consensus 8 ~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 58 (86)
....|+-|-..+.. +.+.. =+..||..|+ .|-.|+..|.
T Consensus 4 ~~~~C~~C~~~I~~-~~~~a---~~~~~H~~CF--------~C~~C~~~L~ 42 (69)
T 2cur_A 4 GSSGCVKCNKAITS-GGITY---QDQPWHADCF--------VCVTCSKKLA 42 (69)
T ss_dssp CCCCCSSSCCCCCT-TCEEE---TTEEECTTTT--------BCTTTCCBCT
T ss_pred CcCCCcccCCEeCc-ceEEE---CccccccCcC--------EECCCCCCCC
Confidence 34578888888764 33322 5678888775 6888887764
No 182
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=48.09 E-value=13 Score=18.93 Aligned_cols=38 Identities=18% Similarity=0.308 Sum_probs=21.5
Q ss_pred CCCCccccccccccc-ccCCCceeEcCCCCCcchHHhHHH
Q 036506 4 AKCPYYCYCTVCLDG-ISDGQKFRRLPECKHCFHVECIDA 42 (86)
Q Consensus 4 ~~~~~~~~C~ICl~~-~~~~~~~~~~~~C~H~fh~~Ci~~ 42 (86)
+...+...|.||+.. |.++....-.. |.-.||..|-..
T Consensus 4 ~~~~d~~~C~iC~KTKFADG~Gh~C~y-Ck~r~CaRCGg~ 42 (62)
T 2a20_A 4 EQKGDAPTCGICHKTKFADGCGHNCSY-CQTKFCARCGGR 42 (62)
T ss_dssp CCSSCCCCCSSSSCSCCCSSCCEEBTT-TCCEECTTSEEE
T ss_pred cccCCcchhhhhccceeccCCCccccc-cCCeeecccCCE
Confidence 445677899999984 66553322222 444455444333
No 183
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=47.54 E-value=10 Score=20.31 Aligned_cols=25 Identities=12% Similarity=0.384 Sum_probs=11.3
Q ss_pred CCcchHHhHHHHHhcCCCccccccccc
Q 036506 32 KHCFHVECIDAWFQSRSTCPLCRIEVA 58 (86)
Q Consensus 32 ~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 58 (86)
+..||..|..+ .-...|..|...+.
T Consensus 53 g~~yC~~cy~~--~~~~~C~~C~~~I~ 77 (101)
T 2cup_A 53 NKILCNKCTTR--EDSPKCKGCFKAIV 77 (101)
T ss_dssp TEEECHHHHTT--CCCCBCSSSCCBCC
T ss_pred CEEEChhHhhh--hcCCccccCCCccc
Confidence 34454444322 11345666655543
No 184
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=46.36 E-value=11 Score=21.35 Aligned_cols=39 Identities=21% Similarity=0.573 Sum_probs=27.8
Q ss_pred ccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCccccccccc
Q 036506 9 YCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVA 58 (86)
Q Consensus 9 ~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 58 (86)
...|.-|-..+.....+. .-+..||..|+ .|-.|+..|.
T Consensus 61 ~~~C~~C~~~I~~~~~v~---a~~~~wH~~CF--------~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLY---AMDSYWHSRCL--------KCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEE---ETTEEEETTTS--------BCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEE---eCCcEEccccc--------CcCcCCCccc
Confidence 357999999887543232 26778998885 6888988774
No 185
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.93 E-value=7.7 Score=20.00 Aligned_cols=39 Identities=26% Similarity=0.470 Sum_probs=25.4
Q ss_pred cccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCccccccccc
Q 036506 10 CYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVA 58 (86)
Q Consensus 10 ~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 58 (86)
..|..|-..+.....+ +..=+..||..|+ .|-.|+..|.
T Consensus 16 ~~C~~C~~~I~~~~~~--~~a~~~~~H~~CF--------~C~~C~~~L~ 54 (82)
T 2ehe_A 16 NTCAECQQLIGHDSRE--LFYEDRHFHEGCF--------RCCRCQRSLA 54 (82)
T ss_dssp CBCTTTCCBCCSSCCB--CCCSSCCCBTTTS--------BCTTTCCBCS
T ss_pred CcCccCCCccccCcEE--EEeCCccccccCC--------eecCCCCccC
Confidence 4688888887732222 2225678888775 5788877664
No 186
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=45.45 E-value=13 Score=20.09 Aligned_cols=37 Identities=22% Similarity=0.530 Sum_probs=23.2
Q ss_pred CCCcccccccccccccCCCceeE-cCCCCCcchHHhHHH
Q 036506 5 KCPYYCYCTVCLDGISDGQKFRR-LPECKHCFHVECIDA 42 (86)
Q Consensus 5 ~~~~~~~C~ICl~~~~~~~~~~~-~~~C~H~fh~~Ci~~ 42 (86)
.+.-.+.|.||... ..+..|.- ...|.-.||..|..+
T Consensus 13 ~~R~~l~C~iC~~~-~~GAciqC~~~~C~~~fHv~CA~~ 50 (87)
T 2lq6_A 13 PARWKLTCYLCKQK-GVGASIQCHKANCYTAFHVTCAQK 50 (87)
T ss_dssp CCCCCCCBTTTTBC-CSSCEEECSCTTTCCEEEHHHHHH
T ss_pred hHHhcCCCcCCCCC-CCcEeEecCCCCCCCcCcHHHHHH
Confidence 34557899999754 11222211 124889999999866
No 187
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=45.09 E-value=6.2 Score=22.28 Aligned_cols=28 Identities=25% Similarity=0.526 Sum_probs=12.7
Q ss_pred ccccccccccCCCceeEcCCCCCcchHHhH
Q 036506 11 YCTVCLDGISDGQKFRRLPECKHCFHVECI 40 (86)
Q Consensus 11 ~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci 40 (86)
.|..|-..+...+.++. .-+..||..|+
T Consensus 10 ~C~~C~~~I~~~e~~~~--a~~~~~H~~CF 37 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTMR--VKDKVYHLECF 37 (123)
T ss_dssp CCSSSSCCCCTTCCCCC--CSSCCCCTTTC
T ss_pred cccCCCCeecCCceEEE--ECCcccccccC
Confidence 46666665553222111 13455555553
No 188
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=44.45 E-value=11 Score=18.76 Aligned_cols=13 Identities=15% Similarity=0.393 Sum_probs=8.6
Q ss_pred ccccccccccccc
Q 036506 8 YYCYCTVCLDGIS 20 (86)
Q Consensus 8 ~~~~C~ICl~~~~ 20 (86)
+-..||+|...+.
T Consensus 9 ~iL~CP~c~~~L~ 21 (56)
T 2kpi_A 9 EILACPACHAPLE 21 (56)
T ss_dssp TSCCCSSSCSCEE
T ss_pred hheeCCCCCCcce
Confidence 3456888877654
No 189
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=44.06 E-value=8.8 Score=19.48 Aligned_cols=40 Identities=23% Similarity=0.529 Sum_probs=26.1
Q ss_pred ccccccccccccC---CCceeEcCCCCCcchHHhHHHHHhcCCCccccccccc
Q 036506 9 YCYCTVCLDGISD---GQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVA 58 (86)
Q Consensus 9 ~~~C~ICl~~~~~---~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 58 (86)
...|+-|-..+.. ...++.. =+..||..|+ .|-.|+..|.
T Consensus 15 ~~~C~~C~~~I~~~g~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~ 57 (77)
T 2egq_A 15 AKKCAGCKNPITGFGKGSSVVAY--EGQSWHDYCF--------HCKKCSVNLA 57 (77)
T ss_dssp CCCCSSSCCCCCCCSSCCCEEEE--TTEEEETTTC--------BCSSSCCBCT
T ss_pred CccCcccCCcccCCCCCceeEEE--CcceeCcccC--------EehhcCCCCC
Confidence 3568888888774 2222222 5678888775 6888887764
No 190
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=42.79 E-value=20 Score=20.05 Aligned_cols=50 Identities=12% Similarity=0.249 Sum_probs=30.5
Q ss_pred CcccccccccccccC-CCceeEcCCCCCcchHHhHHHHHhcCCCccccccccc
Q 036506 7 PYYCYCTVCLDGISD-GQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVA 58 (86)
Q Consensus 7 ~~~~~C~ICl~~~~~-~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 58 (86)
++-..|..|...+.. +... ... =|..||..|..+.+.....|..|...+.
T Consensus 27 ~~CF~C~~C~~~L~~~~~~~-~~~-~g~~yC~~~y~~~~~~~~~C~~C~~~I~ 77 (131)
T 2xjy_A 27 EDCLSCDLCGCRLGEVGRRL-YYK-LGRKLCRRDYLRLFGQDGLCASCDKRIR 77 (131)
T ss_dssp TTTCBCTTTCCBCSSTTCCE-EEE-TTEEECHHHHHHHHCCCEECTTTCCEEC
T ss_pred HHHcccCcCCCccccCCCeE-EEE-CCEEeecCchhhhCCCccChhhcCCccC
Confidence 445667777777653 2221 221 4677888887775544447888887765
No 191
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=40.99 E-value=12 Score=15.82 Aligned_cols=12 Identities=25% Similarity=0.866 Sum_probs=7.7
Q ss_pred Cccccccccchh
Q 036506 49 TCPLCRIEVAIV 60 (86)
Q Consensus 49 ~CP~Cr~~~~~~ 60 (86)
.||+|...++..
T Consensus 8 qcpvcqq~mpaa 19 (29)
T 3vhs_A 8 QCPVCQQMMPAA 19 (29)
T ss_dssp ECTTTCCEEEGG
T ss_pred eChHHHHhCcHH
Confidence 478887665543
No 192
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=40.77 E-value=4.7 Score=20.89 Aligned_cols=40 Identities=20% Similarity=0.432 Sum_probs=25.9
Q ss_pred cccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCccccccccc
Q 036506 8 YYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVA 58 (86)
Q Consensus 8 ~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 58 (86)
....|..|-..+...+.+.. -+..||..|+ .|-.|+..|.
T Consensus 6 ~~~~C~~C~~~I~~~~~~~a---~~~~~H~~CF--------~C~~C~~~L~ 45 (81)
T 1a7i_A 6 GGNKCGACGRTVYHAEEVQC---DGRSFHRCCF--------LCMVCRKNLD 45 (81)
T ss_dssp --CBCSSSCCBCSSTTEEEE---TTEEEESSSE--------ECSSSCCEEC
T ss_pred CCCcCcCcCccccCceeEEe---CCcccccccC--------ccCCCCCCCC
Confidence 34678999998865554322 5678887775 5777776654
No 193
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=37.67 E-value=6.5 Score=20.48 Aligned_cols=17 Identities=18% Similarity=0.565 Sum_probs=10.8
Q ss_pred HHhcCCCccccccccch
Q 036506 43 WFQSRSTCPLCRIEVAI 59 (86)
Q Consensus 43 wl~~~~~CP~Cr~~~~~ 59 (86)
|+..--.||.|+.++..
T Consensus 4 ~LLeiL~CP~ck~~L~~ 20 (69)
T 2pk7_A 4 KLLDILACPICKGPLKL 20 (69)
T ss_dssp CGGGTCCCTTTCCCCEE
T ss_pred HHHhheeCCCCCCcCeE
Confidence 44445578888877653
No 194
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.21 E-value=13 Score=19.01 Aligned_cols=37 Identities=24% Similarity=0.576 Sum_probs=25.0
Q ss_pred cccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCccccccccc
Q 036506 10 CYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVA 58 (86)
Q Consensus 10 ~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 58 (86)
..|+.|-..+... . +. .=+..||..|+ .|-.|+..|.
T Consensus 16 ~~C~~C~~~I~~~-~--v~-a~~~~~H~~CF--------~C~~C~~~L~ 52 (80)
T 2cuq_A 16 PRCARCSKTLTQG-G--VT-YRDQPWHRECL--------VCTGCQTPLA 52 (80)
T ss_dssp CCCTTTCCCCCSC-C--EE-SSSSEECTTTC--------BCSSSCCBCT
T ss_pred CcCCCCCCEecCc-E--EE-ECCchhhhhhC--------CcccCCCcCC
Confidence 5688888877653 2 22 26778888775 6778877764
No 195
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=37.14 E-value=6.1 Score=27.81 Aligned_cols=45 Identities=18% Similarity=0.352 Sum_probs=29.0
Q ss_pred ccccccccCCCceeEcCCCCCcchHHhHHHHHh-----cCCCcccccccc
Q 036506 13 TVCLDGISDGQKFRRLPECKHCFHVECIDAWFQ-----SRSTCPLCRIEV 57 (86)
Q Consensus 13 ~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~-----~~~~CP~Cr~~~ 57 (86)
.||...+..+...+....|..-||..|+.---. ..-.||.|+...
T Consensus 8 CiC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~~ 57 (447)
T 3kv4_A 8 CLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLH 57 (447)
T ss_dssp TTTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHHHH
T ss_pred EeCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCcccc
Confidence 488887653343444446999999999942111 234799997653
No 196
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=36.54 E-value=14 Score=18.17 Aligned_cols=39 Identities=21% Similarity=0.496 Sum_probs=25.9
Q ss_pred cccccccccccCCCceeEcCCCCCcch--HHhHHHHHhcCCCccccccccc
Q 036506 10 CYCTVCLDGISDGQKFRRLPECKHCFH--VECIDAWFQSRSTCPLCRIEVA 58 (86)
Q Consensus 10 ~~C~ICl~~~~~~~~~~~~~~C~H~fh--~~Ci~~wl~~~~~CP~Cr~~~~ 58 (86)
..|+-|-..+..++..+.. -+..|| ..|+ .|-.|+.+|.
T Consensus 3 ~~C~~C~~~I~~~~~~v~a--~~~~wH~~~~CF--------~C~~C~~~L~ 43 (65)
T 2iyb_E 3 VVCQGCHNAIDPEVQRVTY--NNFSWHASTECF--------LCSCCSKCLI 43 (65)
T ss_dssp EECTTTSSEECTTSCEEEE--TTEEEETTTTTS--------BCTTTCCBCT
T ss_pred CCCcCCCCeeccCceEEEE--CCCccCCCCCCE--------ECCCCCCcCC
Confidence 3688888888753222222 577888 8775 6778877764
No 197
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.50 E-value=6 Score=20.44 Aligned_cols=39 Identities=23% Similarity=0.548 Sum_probs=25.2
Q ss_pred cccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCccccccccc
Q 036506 8 YYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVA 58 (86)
Q Consensus 8 ~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 58 (86)
....|+-|-..+.. ..+ . .-+..||..|+ .|..|+..|.
T Consensus 14 ~~~~C~~C~~~I~~-~~~--~-a~~~~~H~~CF--------~C~~C~~~L~ 52 (81)
T 2dlo_A 14 TLEKCATCSQPILD-RIL--R-AMGKAYHPGCF--------TCVVCHRGLD 52 (81)
T ss_dssp SCCBCTTTCCBCCS-CCE--E-ETTEEECTTTC--------BCSSSCCBCT
T ss_pred CCCccccCCCeecc-eeE--E-ECCccccHHhc--------CcccCCCccC
Confidence 34567888887763 222 2 25677887775 6888887764
No 198
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.19 E-value=6.3 Score=20.34 Aligned_cols=37 Identities=22% Similarity=0.612 Sum_probs=24.7
Q ss_pred cccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCccccccccc
Q 036506 10 CYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVA 58 (86)
Q Consensus 10 ~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 58 (86)
..|+.|-..+.. ..+. .-+..||..|+ .|-.|+..|.
T Consensus 16 ~~C~~C~~~I~~-~~v~---a~~~~wH~~CF--------~C~~C~~~L~ 52 (81)
T 1v6g_A 16 TRCFSCDQFIEG-EVVS---ALGKTYHPDCF--------VCAVCRLPFP 52 (81)
T ss_dssp CBCTTTCCBCCS-CCEE---ETTEEECTTTS--------SCSSSCCCCC
T ss_pred CcCccccCEecc-ceEE---ECCceeCccCC--------ccccCCCCCC
Confidence 478888888763 3222 25778888775 5777877664
No 199
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=34.84 E-value=5.9 Score=20.55 Aligned_cols=18 Identities=11% Similarity=0.126 Sum_probs=11.5
Q ss_pred HHHhcCCCccccccccch
Q 036506 42 AWFQSRSTCPLCRIEVAI 59 (86)
Q Consensus 42 ~wl~~~~~CP~Cr~~~~~ 59 (86)
+||..--.||+|+.++..
T Consensus 5 ~~LLeiL~CP~ck~~L~~ 22 (67)
T 2jny_A 5 PQLLEVLACPKDKGPLRY 22 (67)
T ss_dssp GGGTCCCBCTTTCCBCEE
T ss_pred HHHHHHhCCCCCCCcCeE
Confidence 344455578888877654
No 200
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=33.87 E-value=32 Score=19.16 Aligned_cols=49 Identities=10% Similarity=0.014 Sum_probs=29.7
Q ss_pred ccccccccccccC-CCceeEcCCCCCcchHHhHHHHHhcCCCccccccccch
Q 036506 9 YCYCTVCLDGISD-GQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVAI 59 (86)
Q Consensus 9 ~~~C~ICl~~~~~-~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 59 (86)
-..|..|...+.+ +... .. .=+..||..|..+.+.....|-.|...+..
T Consensus 32 CF~C~~C~~~L~~~~~~~-~~-~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 32 CLKCSSCQAQLGDIGTSS-YT-KSGMILCRNDYIRLFGNSGAGGSGGHMGSG 81 (122)
T ss_dssp HHCCSSSCCCTTTSEECC-EE-ETTEEECHHHHHHHHCCCCSSSCSSCCSCC
T ss_pred CCCcCCCCCcccccCCeE-EE-ECCeeecHHHHHHHcCCCCccccCCCCcCc
Confidence 3456666666642 1111 11 146678888887766555578888877764
No 201
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=33.80 E-value=13 Score=17.73 Aligned_cols=14 Identities=29% Similarity=0.479 Sum_probs=9.2
Q ss_pred CCCccccccccccc
Q 036506 5 KCPYYCYCTVCLDG 18 (86)
Q Consensus 5 ~~~~~~~C~ICl~~ 18 (86)
+.|++-.||+|-..
T Consensus 26 ~lP~dw~CP~Cg~~ 39 (46)
T 6rxn_A 26 QLPDDWCCPVCGVS 39 (46)
T ss_dssp GSCTTCBCTTTCCB
T ss_pred hCCCCCcCcCCCCc
Confidence 45666677777654
No 202
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.93 E-value=7.3 Score=19.98 Aligned_cols=38 Identities=18% Similarity=0.441 Sum_probs=24.8
Q ss_pred cccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCccccccccch
Q 036506 10 CYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVAI 59 (86)
Q Consensus 10 ~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 59 (86)
..|+.|-..+.. ..+. .-+..||..|+ .|-.|+..|..
T Consensus 16 ~~C~~C~~~I~~-~~v~---a~~~~~H~~CF--------~C~~C~~~L~~ 53 (80)
T 1x3h_A 16 PKCGGCNRPVLE-NYLS---AMDTVWHPECF--------VCGDCFTSFST 53 (80)
T ss_dssp CBCTTTCCBCCS-SCEE---ETTEEECTTTC--------BCSSSCCBSCS
T ss_pred CccccCCCeecc-eeEE---ECCCeEecCcC--------ChhhCCCCCCC
Confidence 468888887765 2222 25677887774 67888877653
No 203
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=31.06 E-value=19 Score=17.53 Aligned_cols=15 Identities=27% Similarity=0.445 Sum_probs=10.2
Q ss_pred CCCCccccccccccc
Q 036506 4 AKCPYYCYCTVCLDG 18 (86)
Q Consensus 4 ~~~~~~~~C~ICl~~ 18 (86)
++.+++-.||+|-..
T Consensus 31 ~~lP~dw~CP~Cg~~ 45 (52)
T 1e8j_A 31 EDLPDDWACPVCGAS 45 (52)
T ss_dssp TSSCTTCCCSSSCCC
T ss_pred HHCCCCCcCCCCCCc
Confidence 455777778888664
No 204
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=28.00 E-value=15 Score=20.26 Aligned_cols=14 Identities=29% Similarity=0.774 Sum_probs=10.7
Q ss_pred CCCccccccccchh
Q 036506 47 RSTCPLCRIEVAIV 60 (86)
Q Consensus 47 ~~~CP~Cr~~~~~~ 60 (86)
...||+|...+...
T Consensus 47 g~~CPvCgs~l~~~ 60 (112)
T 1l8d_A 47 KGKCPVCGRELTDE 60 (112)
T ss_dssp SEECTTTCCEECHH
T ss_pred CCCCCCCCCcCCHH
Confidence 45799999887653
No 205
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=27.54 E-value=40 Score=20.26 Aligned_cols=27 Identities=11% Similarity=0.220 Sum_probs=13.8
Q ss_pred CCcchHHhHHHHHhcCCCccccccccc
Q 036506 32 KHCFHVECIDAWFQSRSTCPLCRIEVA 58 (86)
Q Consensus 32 ~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 58 (86)
+..||..|..+.+.....|..|...+.
T Consensus 54 g~~yC~~cy~~~~~~~~~C~~C~~~I~ 80 (188)
T 1rut_X 54 GMILCRNDYIRLFGNSGACSACGQSIP 80 (188)
T ss_dssp TEEECHHHHHHHHSCCEECTTTCCEEC
T ss_pred CccccccccccccccCCccccCCCccc
Confidence 455666665554332224666665553
No 206
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=27.43 E-value=23 Score=19.56 Aligned_cols=37 Identities=8% Similarity=0.056 Sum_probs=17.7
Q ss_pred CcccccccccccccC-CCceeEcCCCCCcchHHhHHHHHh
Q 036506 7 PYYCYCTVCLDGISD-GQKFRRLPECKHCFHVECIDAWFQ 45 (86)
Q Consensus 7 ~~~~~C~ICl~~~~~-~~~~~~~~~C~H~fh~~Ci~~wl~ 45 (86)
++-..|..|...+.. +... .. .=+..||..|..+.+.
T Consensus 28 ~~CF~C~~C~~~L~~~g~~~-~~-~~g~~yC~~~y~~~f~ 65 (114)
T 1j2o_A 28 EDCLSCDLCGCRLGEVGRRL-YY-KLGRKLCRRDYLRLGG 65 (114)
T ss_dssp TTTCCCSSSCSCCCCSSSCC-CC-BTTBCCCHHHHHHHHT
T ss_pred HhcCcccccCCchhcCCCee-EE-ECCeeechHHHHHHhC
Confidence 344556666665542 1111 11 1355666666665444
No 207
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=26.51 E-value=21 Score=17.64 Aligned_cols=15 Identities=27% Similarity=0.514 Sum_probs=9.6
Q ss_pred CCCCccccccccccc
Q 036506 4 AKCPYYCYCTVCLDG 18 (86)
Q Consensus 4 ~~~~~~~~C~ICl~~ 18 (86)
++.|++-.||+|-..
T Consensus 31 e~lP~dw~CP~Cg~~ 45 (54)
T 4rxn_A 31 KDIPDDWVCPLCGVG 45 (54)
T ss_dssp GGSCTTCBCTTTCCB
T ss_pred hHCCCCCcCcCCCCc
Confidence 355666677777654
No 208
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=26.08 E-value=25 Score=18.87 Aligned_cols=15 Identities=20% Similarity=0.317 Sum_probs=9.6
Q ss_pred CCCCccccccccccc
Q 036506 4 AKCPYYCYCTVCLDG 18 (86)
Q Consensus 4 ~~~~~~~~C~ICl~~ 18 (86)
++.|++-.||+|-..
T Consensus 55 edlPddW~CPvCga~ 69 (81)
T 2kn9_A 55 DDIPDDWSCPDCGAA 69 (81)
T ss_dssp TTSCTTCCCTTTCCC
T ss_pred hHCCCCCcCCCCCCC
Confidence 455666677777654
No 209
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=25.60 E-value=22 Score=17.30 Aligned_cols=15 Identities=20% Similarity=0.390 Sum_probs=9.6
Q ss_pred CCCCccccccccccc
Q 036506 4 AKCPYYCYCTVCLDG 18 (86)
Q Consensus 4 ~~~~~~~~C~ICl~~ 18 (86)
++.|++-.||+|-..
T Consensus 30 ~~lP~dw~CP~Cg~~ 44 (52)
T 1yk4_A 30 EDLPDDWVCPLCGAP 44 (52)
T ss_dssp GGSCTTCBCTTTCCB
T ss_pred hHCCCCCcCCCCCCC
Confidence 355666677777653
No 210
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=25.06 E-value=30 Score=19.15 Aligned_cols=44 Identities=16% Similarity=0.209 Sum_probs=23.8
Q ss_pred cccccccccCCCceeEcCCCCCcchHHhHHHHHhc--------CCCcccccc
Q 036506 12 CTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQS--------RSTCPLCRI 55 (86)
Q Consensus 12 C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~--------~~~CP~Cr~ 55 (86)
|..|......+..+.....|...||..|+...... .-.||.|+.
T Consensus 62 c~~c~~~~~~~~~m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~ 113 (117)
T 4bbq_A 62 VDQNEETQDFEKKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQ 113 (117)
T ss_dssp BCCHHHHCCGGGSCEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC-
T ss_pred ccccccccccCcceEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcC
Confidence 33443333333334444569999999997643211 124888864
No 211
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=25.03 E-value=22 Score=17.52 Aligned_cols=14 Identities=29% Similarity=0.463 Sum_probs=8.8
Q ss_pred CCCccccccccccc
Q 036506 5 KCPYYCYCTVCLDG 18 (86)
Q Consensus 5 ~~~~~~~C~ICl~~ 18 (86)
+.|++-.||+|-..
T Consensus 32 ~lP~dw~CP~Cga~ 45 (55)
T 2v3b_B 32 DIPADWVCPDCGVG 45 (55)
T ss_dssp GSCTTCCCTTTCCC
T ss_pred HCCCCCcCCCCCCC
Confidence 45666677777653
No 212
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=24.96 E-value=66 Score=17.69 Aligned_cols=48 Identities=10% Similarity=0.130 Sum_probs=29.5
Q ss_pred CcccccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCccccccccch
Q 036506 7 PYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVAI 59 (86)
Q Consensus 7 ~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 59 (86)
++-..|..|...+... .. ... =|..||..|..+. -...|..|...+..
T Consensus 28 ~~CF~C~~C~~~L~~~-~f-~~~-~g~~yC~~cy~~~--~~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 28 LKHFCCFDCDSILAGE-IY-VMV-NDKPVCKPCYVKN--HAVVCQGCHNAIDP 75 (126)
T ss_dssp GGGSBCTTTCCBCTTS-EE-EEE-TTEEEEHHHHHHH--SCCBCTTTCSBCCT
T ss_pred CCCCCcCCCCCCCCcC-EE-EeE-CCEEechHHhCcC--cCccCcccCCcCCc
Confidence 3445677777776532 11 122 5677888887652 35678889887763
No 213
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=23.93 E-value=6.2 Score=20.49 Aligned_cols=14 Identities=14% Similarity=0.384 Sum_probs=8.7
Q ss_pred cCCCccccccccch
Q 036506 46 SRSTCPLCRIEVAI 59 (86)
Q Consensus 46 ~~~~CP~Cr~~~~~ 59 (86)
.--.||+|+.++..
T Consensus 7 ~iL~CP~ck~~L~~ 20 (68)
T 2jr6_A 7 DILVCPVTKGRLEY 20 (68)
T ss_dssp CCCBCSSSCCBCEE
T ss_pred hheECCCCCCcCeE
Confidence 34467888776543
No 214
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=22.42 E-value=27 Score=18.10 Aligned_cols=13 Identities=15% Similarity=0.391 Sum_probs=6.6
Q ss_pred CCCcccccccccc
Q 036506 5 KCPYYCYCTVCLD 17 (86)
Q Consensus 5 ~~~~~~~C~ICl~ 17 (86)
+.|++-.||+|-.
T Consensus 36 ~lPddw~CP~Cga 48 (70)
T 1dx8_A 36 DLSDSFMCPACRS 48 (70)
T ss_dssp GSCTTCBCTTTCC
T ss_pred hCCCCCcCCCCCC
Confidence 3444455555554
No 215
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=22.00 E-value=4.2 Score=16.72 Aligned_cols=12 Identities=25% Similarity=0.780 Sum_probs=7.1
Q ss_pred cchHHhHHHHHh
Q 036506 34 CFHVECIDAWFQ 45 (86)
Q Consensus 34 ~fh~~Ci~~wl~ 45 (86)
.||..|-.+|+.
T Consensus 6 ffcetcskpwlv 17 (26)
T 1loi_A 6 FFCETCSKPWLV 17 (26)
T ss_dssp HHHHTSSCTTGG
T ss_pred HHHHhcCCchhh
Confidence 366666666653
No 216
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=21.49 E-value=6.3 Score=20.48 Aligned_cols=12 Identities=33% Similarity=0.919 Sum_probs=7.6
Q ss_pred CCccccccccch
Q 036506 48 STCPLCRIEVAI 59 (86)
Q Consensus 48 ~~CP~Cr~~~~~ 59 (86)
-.||+|+.++..
T Consensus 9 L~CP~ck~~L~~ 20 (68)
T 2hf1_A 9 LVCPLCKGPLVF 20 (68)
T ss_dssp CBCTTTCCBCEE
T ss_pred eECCCCCCcCeE
Confidence 357777776543
No 217
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=21.26 E-value=25 Score=21.23 Aligned_cols=37 Identities=19% Similarity=0.521 Sum_probs=24.9
Q ss_pred ccccccccccCCCceeEcCCCCCcchHHhHHHHHhcCCCccccccccc
Q 036506 11 YCTVCLDGISDGQKFRRLPECKHCFHVECIDAWFQSRSTCPLCRIEVA 58 (86)
Q Consensus 11 ~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 58 (86)
.|+.|...+...+.+.. =+..||..|+ .|-.|+..|.
T Consensus 117 ~C~~C~~~I~~~~~v~a---~~~~~H~~CF--------~C~~C~~~L~ 153 (192)
T 1b8t_A 117 GCPRCGQAVYAAEKVIG---AGKSWHKSCF--------RCAKCGKSLE 153 (192)
T ss_dssp ECTTTSCEECSSSCEEE---TTEEECTTTC--------BCTTTCCBCC
T ss_pred cCCCCCCEecCcEEEec---CCCccchhcC--------CccccCCCCC
Confidence 48889888876554432 4677887774 5777776664
No 218
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=20.65 E-value=76 Score=21.25 Aligned_cols=36 Identities=19% Similarity=0.252 Sum_probs=24.0
Q ss_pred Cccccccccccccc-CCCceeEcCCCCCcchHHhHHH
Q 036506 7 PYYCYCTVCLDGIS-DGQKFRRLPECKHCFHVECIDA 42 (86)
Q Consensus 7 ~~~~~C~ICl~~~~-~~~~~~~~~~C~H~fh~~Ci~~ 42 (86)
.....|..|...+. ....--....||..+|..|...
T Consensus 355 ~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~~ 391 (406)
T 2vrw_B 355 EETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGR 391 (406)
T ss_dssp SSCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGGG
T ss_pred CCCCCCccccchhceeCCCCCCCCCCcCccchhhhhh
Confidence 45678999998774 1222123335999999999654
No 219
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=20.32 E-value=1e+02 Score=15.82 Aligned_cols=35 Identities=17% Similarity=0.398 Sum_probs=22.4
Q ss_pred CcccccccccccccCCCceeEcCCCCCcchHHhHHH
Q 036506 7 PYYCYCTVCLDGISDGQKFRRLPECKHCFHVECIDA 42 (86)
Q Consensus 7 ~~~~~C~ICl~~~~~~~~~~~~~~C~H~fh~~Ci~~ 42 (86)
+.+..|-+|.+.-..+....-+ .|.-.||..|+..
T Consensus 28 ~~~v~C~~C~~~~~~~A~ksCl-~C~~s~C~~hl~~ 62 (78)
T 2ffw_A 28 AEKVLCQFCDQDPAQDAVKTCV-TCEVSYCDECLKA 62 (78)
T ss_dssp SCCCBCSSCCSSSCCBCCEEET-TTTEEECHHHHHH
T ss_pred CCCccCCcCCCCCCCCCeeEcc-CccchhhhhhhHh
Confidence 4567899998642111222344 4999999999876
No 220
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=20.18 E-value=7.1 Score=20.38 Aligned_cols=11 Identities=27% Similarity=0.930 Sum_probs=6.5
Q ss_pred CCccccccccc
Q 036506 48 STCPLCRIEVA 58 (86)
Q Consensus 48 ~~CP~Cr~~~~ 58 (86)
-.||.|+.++.
T Consensus 9 L~CP~ck~~L~ 19 (70)
T 2js4_A 9 LVCPVCKGRLE 19 (70)
T ss_dssp CBCTTTCCBEE
T ss_pred eECCCCCCcCE
Confidence 35666666554
Done!