BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036510
(288 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 297 bits (760), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 152/288 (52%), Positives = 197/288 (68%), Gaps = 8/288 (2%)
Query: 6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAH 65
++T HED +HD MDYYG RLAT SSD S+KI V N +A L GH+G VW+VAWAH
Sbjct: 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAH 67
Query: 66 PKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSD 125
P +G+ILASCS+D VIIW+E N W K H H SSVNS+ WAPH+ GL LACGSSD
Sbjct: 68 PMYGNILASCSYDRKVIIWREENGT-WEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSD 126
Query: 126 GNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALV---GSGFLDPVQKLCSGG 182
G IS+ T +G W+ +I+ AH +G +VSWAP+ PG+L+ + +++ SGG
Sbjct: 127 GAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGG 186
Query: 183 CDNTVKVWK-LYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWT 241
CDN +K+WK +G WK + L+ H+DWVRDVAWAP++GLP STIAS S+DG+V IWT
Sbjct: 187 CDNLIKLWKEEEDGQWKEE--QKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWT 244
Query: 242 V-AREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEEA 288
+ W K+LH F V+ VSWS+T NILAV+ G+N VTLW+E+
Sbjct: 245 CDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 9/96 (9%)
Query: 4 QKIETGHEDTVHDVA----MDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHK--GA 57
QK+E H D V DVA + +A+ S D + I + +S + HK
Sbjct: 206 QKLE-AHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDV 264
Query: 58 VWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWI 93
VW V+W+ +ILA D V +WKE +W+
Sbjct: 265 VWHVSWS--ITANILAVSGGDNKVTLWKESVDGQWV 298
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 244 bits (623), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 134/284 (47%), Positives = 177/284 (62%), Gaps = 6/284 (2%)
Query: 6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAH 65
I H + +HD +DYYGKRLAT SSD +IKI V T + + L+GH+G VW V WAH
Sbjct: 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63
Query: 66 PKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSD 125
PKFG+ILASCS+DG V+IWKE N W + V H +SVNS+ WAPHE G L SSD
Sbjct: 64 PKFGTILASCSYDGKVLIWKEENGR-WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD 122
Query: 126 GNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDN 185
G +SV + +G ID AH +GV S SWAP+T +G + +K +GG DN
Sbjct: 123 GKVSVVEFKENGTTSPIIID-AHAIGVNSASWAPATIEEDGEHNGTKES-RKFVTGGADN 180
Query: 186 TVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVARE 245
VK+WK + L+ H+DWVRDVAW+P + L +S +AS S+D IIWT E
Sbjct: 181 LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV-LLRSYLASVSQDRTCIIWTQDNE 239
Query: 246 GDQWEGKVLHDFKTP--VYRVSWSLTGNILAVADGNNNVTLWEE 287
W+ +L + K P ++R SWSL+GN+LA++ G+N VTLW+E
Sbjct: 240 QGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE 283
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 242 bits (618), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 134/284 (47%), Positives = 177/284 (62%), Gaps = 6/284 (2%)
Query: 6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAH 65
I H + +HD +DYYGKRLAT SSD +IKI V T + + L+GH+G VW V WAH
Sbjct: 6 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 65
Query: 66 PKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSD 125
PKFG+ILASCS+DG V+IWKE N W + V H +SVNS+ WAPHE G L SSD
Sbjct: 66 PKFGTILASCSYDGKVLIWKEEN-GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD 124
Query: 126 GNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDN 185
G +SV + +G ID AH +GV S SWAP+T +G + +K +GG DN
Sbjct: 125 GKVSVVEFKENGTTSPIIID-AHAIGVNSASWAPATIEEDGEHNGTKES-RKFVTGGADN 182
Query: 186 TVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVARE 245
VK+WK + L+ H+DWVRDVAW+P + L +S +AS S+D IIWT E
Sbjct: 183 LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV-LLRSYLASVSQDRTCIIWTQDNE 241
Query: 246 GDQWEGKVLHDFKTP--VYRVSWSLTGNILAVADGNNNVTLWEE 287
W+ +L + K P ++R SWSL+GN+LA++ G+N VTLW+E
Sbjct: 242 QGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE 285
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 242 bits (617), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 134/284 (47%), Positives = 177/284 (62%), Gaps = 6/284 (2%)
Query: 6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAH 65
I H + +HD MDYYGKR+AT SSD +IKI V T + + L+GH+G VW V WAH
Sbjct: 4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63
Query: 66 PKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSD 125
PKFG+ILASCS+DG V+IWKE N W + V H +SVNS+ WAPHE G L SSD
Sbjct: 64 PKFGTILASCSYDGKVMIWKEEN-GRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSD 122
Query: 126 GNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDN 185
G +SV + +G ID AH +GV S SWAP+T +G + +K +GG DN
Sbjct: 123 GKVSVVEFKENGTTSPIIID-AHAIGVNSASWAPATIEEDGEHNGTKES-RKFVTGGADN 180
Query: 186 TVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVARE 245
VK+WK + L+ H+DWVRDVAW+P + L +S +AS S+D IIWT E
Sbjct: 181 LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV-LLRSYMASVSQDRTCIIWTQDNE 239
Query: 246 GDQWEGKVLHDFKTP--VYRVSWSLTGNILAVADGNNNVTLWEE 287
W+ +L + K P ++R SWSL+GN+LA++ G+N VTLW+E
Sbjct: 240 QGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE 283
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 241 bits (616), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 134/284 (47%), Positives = 177/284 (62%), Gaps = 6/284 (2%)
Query: 6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAH 65
I H + +HD +DYYGKRLAT SSD +IKI V T + + L+GH+G VW V WAH
Sbjct: 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63
Query: 66 PKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSD 125
PKFG+ILASCS+DG V+IWKE N W + V H +SVNS+ WAPHE G L SSD
Sbjct: 64 PKFGTILASCSYDGKVLIWKEEN-GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD 122
Query: 126 GNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDN 185
G +SV + +G ID AH +GV S SWAP+T +G + +K +GG DN
Sbjct: 123 GKVSVVEFKENGTTSPIIID-AHAIGVNSASWAPATIEEDGEHNGTKES-RKFVTGGADN 180
Query: 186 TVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVARE 245
VK+WK + L+ H+DWVRDVAW+P + L +S +AS S+D IIWT E
Sbjct: 181 LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV-LLRSYLASVSQDRTCIIWTQDNE 239
Query: 246 GDQWEGKVLHDFKTP--VYRVSWSLTGNILAVADGNNNVTLWEE 287
W+ +L + K P ++R SWSL+GN+LA++ G+N VTLW+E
Sbjct: 240 QGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE 283
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 234 bits (598), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 133/284 (46%), Positives = 173/284 (60%), Gaps = 6/284 (2%)
Query: 6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAH 65
I H + +HD DYYGKR AT SSD +IKI V T + + L+GH+G VW V WAH
Sbjct: 4 IANAHNEXIHDAVXDYYGKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63
Query: 66 PKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSD 125
PKFG+ILASCS+DG V IWKE N W + V H +SVNS+ WAPHE G L SSD
Sbjct: 64 PKFGTILASCSYDGKVXIWKEEN-GRWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASSD 122
Query: 126 GNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDN 185
G +SV + +G ID AH +GV S SWAP+T +G + +K +GG DN
Sbjct: 123 GKVSVVEFKENGTTSPIIID-AHAIGVNSASWAPATIEEDGEHNGTKES-RKFVTGGADN 180
Query: 186 TVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVARE 245
VK+WK + L+ H+DWVRDVAW+P + L +S AS S+D IIWT E
Sbjct: 181 LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV-LLRSYXASVSQDRTCIIWTQDNE 239
Query: 246 GDQWEGKVLHDFKTP--VYRVSWSLTGNILAVADGNNNVTLWEE 287
W+ +L + K P ++R SWSL+GN+LA++ G+N VTLW+E
Sbjct: 240 QGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE 283
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 108 bits (271), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 93/342 (27%), Positives = 142/342 (41%), Gaps = 70/342 (20%)
Query: 4 QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLS--GHKGAVWEV 61
Q ++GH+D VHDV D+YG+ +AT SSD IK+ + +TS S H ++ +
Sbjct: 4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAI 63
Query: 62 AWAHPKFGSILASCSFDGTVIIWKEGNSNE------WIKDHVFEDHKSSVNSIDWAPHEL 115
WA P++G I+AS S+D TV +W+E E W K D K S+ S+ +AP L
Sbjct: 64 DWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHL 123
Query: 116 GLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGF---- 171
GL LAC +DG + ++ D +TS S P + S F
Sbjct: 124 GLKLACLGNDGILRLY--------DALEPSDLRSWTLTSEXKVLSIPPANHLQSDFCLSW 175
Query: 172 ----LDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKST 227
P +KL + + + +G K+ L H +R ++WAP++G
Sbjct: 176 CPSRFSP-EKLAVSALEQAIIYQRGKDG--KLHVAAKLPGHKSLIRSISWAPSIGRWYQL 232
Query: 228 IASASEDGKVIIWTVA------------------------------REGDQWEGKVL--- 254
IA+ +DG++ I+ + R E K
Sbjct: 233 IATGCKDGRIRIFKITEKLSPLASEESLTNSNXFDNSADVDXDAQGRSDSNTEEKAELQS 292
Query: 255 ----------HDFKTPVYRVSWSLTGNILAVADGNNNVTLWE 286
D V+ VSW+LTG IL+ A + V LW+
Sbjct: 293 NLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWK 334
Score = 34.7 bits (78), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Query: 12 DTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSI 71
D DV D G+ + S+ K N + L++ H G VW V+W G+I
Sbjct: 267 DNSADVDXDAQGR----SDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLT--GTI 320
Query: 72 LASCSFDGTVIIWKEGNSNEW 92
L+S DG V +WK SNE+
Sbjct: 321 LSSAGDDGKVRLWKATYSNEF 341
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 108 bits (270), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 94/344 (27%), Positives = 143/344 (41%), Gaps = 74/344 (21%)
Query: 4 QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLS--GHKGAVWEV 61
Q ++GH+D VHDV D+YG+ +AT SSD IK+ + +TS S H ++ +
Sbjct: 4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAI 63
Query: 62 AWAHPKFGSILASCSFDGTVIIWKEGNSNE------WIKDHVFEDHKSSVNSIDWAPHEL 115
WA P++G I+AS S+D TV +W+E E W K D K S+ S+ +AP L
Sbjct: 64 DWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHL 123
Query: 116 GLCLACGSSDGNISVFTARADGGWD----TSRID------QAHPVGVTSVSWAPSTAPGA 165
GL LAC +DG + ++ A TS + H +SW PS
Sbjct: 124 GLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSR---- 179
Query: 166 LVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPK 225
P +KL + + + +G K+ L H +R ++WAP++G
Sbjct: 180 ------FSP-EKLAVSALEQAIIYQRGKDG--KLHVAAKLPGHKSLIRSISWAPSIGRWY 230
Query: 226 STIASASEDGKVIIWTVA------------------------------REGDQWEGKVL- 254
IA+ +DG++ I+ + R E K
Sbjct: 231 QLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAEL 290
Query: 255 ------------HDFKTPVYRVSWSLTGNILAVADGNNNVTLWE 286
D V+ VSW+LTG IL+ A + V LW+
Sbjct: 291 QSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWK 334
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 12 DTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSI 71
D DV MD G+ + S+ K N + L++ H G VW V+W G+I
Sbjct: 267 DNSADVDMDAQGR----SDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLT--GTI 320
Query: 72 LASCSFDGTVIIWKEGNSNEW 92
L+S DG V +WK SNE+
Sbjct: 321 LSSAGDDGKVRLWKATYSNEF 341
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 108 bits (270), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 93/342 (27%), Positives = 142/342 (41%), Gaps = 70/342 (20%)
Query: 4 QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLS--GHKGAVWEV 61
Q ++GH+D VHDV D+YG+ +AT SSD IK+ + +TS S H ++ +
Sbjct: 2 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAI 61
Query: 62 AWAHPKFGSILASCSFDGTVIIWKEGNSNE------WIKDHVFEDHKSSVNSIDWAPHEL 115
WA P++G I+AS S+D TV +W+E E W K D K S+ S+ +AP L
Sbjct: 62 DWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHL 121
Query: 116 GLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGF---- 171
GL LAC +DG + ++ D +TS S P + S F
Sbjct: 122 GLKLACLGNDGILRLY--------DALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSW 173
Query: 172 ----LDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKST 227
P +KL + + + +G K+ L H +R ++WAP++G
Sbjct: 174 CPSRFSP-EKLAVSALEQAIIYQRGKDG--KLHVAAKLPGHKSLIRSISWAPSIGRWYQL 230
Query: 228 IASASEDGKVIIWTVA------------------------------REGDQWEGKVL--- 254
IA+ +DG++ I+ + R E K
Sbjct: 231 IATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQS 290
Query: 255 ----------HDFKTPVYRVSWSLTGNILAVADGNNNVTLWE 286
D V+ VSW+LTG IL+ A + V LW+
Sbjct: 291 NLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWK 332
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 12 DTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSI 71
D DV MD G+ + S+ K N + L++ H G VW V+W G+I
Sbjct: 265 DNSADVDMDAQGR----SDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLT--GTI 318
Query: 72 LASCSFDGTVIIWKEGNSNEW 92
L+S DG V +WK SNE+
Sbjct: 319 LSSAGDDGKVRLWKATYSNEF 339
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 85/280 (30%), Positives = 122/280 (43%), Gaps = 42/280 (15%)
Query: 8 TGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPK 67
TGH +V VA G+ +A+AS D ++K+ N QHL L+GH +VW VA++
Sbjct: 300 TGHSSSVWGVAFSPDGQTIASASDDKTVKLW---NRNGQHLQTLTGHSSSVWGVAFSPD- 355
Query: 68 FGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGN 127
G +AS S D TV +W N N + H SSV + ++P G +A S D
Sbjct: 356 -GQTIASASDDKTVKLW---NRNGQLL-QTLTGHSSSVRGVAFSPD--GQTIASASDDKT 408
Query: 128 ISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTV 187
+ + W+ + G +S W G F Q + S D TV
Sbjct: 409 VKL--------WNRNGQLLQTLTGHSSSVW----------GVAFSPDDQTIASASDDKTV 450
Query: 188 KVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGD 247
K+W NG L H+ VR VA++P+ TIASAS+D V +W R G
Sbjct: 451 KLWN-RNG----QLLQTLTGHSSSVRGVAFSPD----GQTIASASDDKTVKLWN--RNGQ 499
Query: 248 QWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE 287
+ L + V V++S G +A A + V LW
Sbjct: 500 LLQ--TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR 537
Score = 70.9 bits (172), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 79/280 (28%), Positives = 119/280 (42%), Gaps = 42/280 (15%)
Query: 8 TGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPK 67
TGH +V+ VA G+ +A+AS D ++K+ N Q L L+GH +VW VA++
Sbjct: 259 TGHSSSVNGVAFRPDGQTIASASDDKTVKLW---NRNGQLLQTLTGHSSSVWGVAFSPD- 314
Query: 68 FGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGN 127
G +AS S D TV +W + H SSV + ++P G +A S D
Sbjct: 315 -GQTIASASDDKTVKLWNRNGQHL----QTLTGHSSSVWGVAFSPD--GQTIASASDDKT 367
Query: 128 ISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTV 187
+ ++ + H V V+++P Q + S D TV
Sbjct: 368 VKLWNRNG----QLLQTLTGHSSSVRGVAFSPDG--------------QTIASASDDKTV 409
Query: 188 KVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGD 247
K+W NG L H+ V VA++P+ TIASAS+D V +W R G
Sbjct: 410 KLWN-RNG----QLLQTLTGHSSSVWGVAFSPD----DQTIASASDDKTVKLWN--RNGQ 458
Query: 248 QWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE 287
+ L + V V++S G +A A + V LW
Sbjct: 459 LLQ--TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR 496
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 80/278 (28%), Positives = 119/278 (42%), Gaps = 42/278 (15%)
Query: 10 HEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFG 69
H +V VA G+ +A+AS D ++K+ N Q L L+GH +VW VA++ G
Sbjct: 15 HSSSVRGVAFSPDGQTIASASDDKTVKLW---NRNGQLLQTLTGHSSSVWGVAFSPD--G 69
Query: 70 SILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNIS 129
+AS S D TV +W N N + H SSV + ++P G +A S D +
Sbjct: 70 QTIASASDDKTVKLW---NRNGQLL-QTLTGHSSSVRGVAFSPD--GQTIASASDDKTVK 123
Query: 130 VFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKV 189
+ W+ + G +S W + +P Q + S D TVK+
Sbjct: 124 L--------WNRNGQLLQTLTGHSSSVWGVAFSPDG----------QTIASASDDKTVKL 165
Query: 190 WKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQW 249
W NG L H+ V VA++P+ TIASAS+D V +W R G
Sbjct: 166 WN-RNG----QLLQTLTGHSSSVWGVAFSPD----GQTIASASDDKTVKLWN--RNGQLL 214
Query: 250 EGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE 287
+ L + V V++S G +A A + V LW
Sbjct: 215 Q--TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR 250
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 102/233 (43%), Gaps = 38/233 (16%)
Query: 8 TGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPK 67
TGH +V VA G+ +A+AS D ++K+ N Q L L+GH +VW VA++ P
Sbjct: 382 TGHSSSVRGVAFSPDGQTIASASDDKTVKLW---NRNGQLLQTLTGHSSSVWGVAFS-PD 437
Query: 68 FGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGN 127
+I AS S D TV +W N N + H SSV + ++P G +A S D
Sbjct: 438 DQTI-ASASDDKTVKLW---NRNGQLL-QTLTGHSSSVRGVAFSPD--GQTIASASDDKT 490
Query: 128 ISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTV 187
+ ++ + H V V+++P Q + S D TV
Sbjct: 491 VKLWNRNGQ----LLQTLTGHSSSVRGVAFSPDG--------------QTIASASDDKTV 532
Query: 188 KVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIW 240
K+W NG L H+ V VA++P+ TIASAS D V +W
Sbjct: 533 KLWN-RNG----QLLQTLTGHSSSVWGVAFSPD----GQTIASASSDKTVKLW 576
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 82/275 (29%), Positives = 122/275 (44%), Gaps = 36/275 (13%)
Query: 18 AMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKL--SGHKGAVWEVAWAHPKFGSILASC 75
+ D+ LAT S+D IK++ V + + L + HK A+ VAW P S+LA+
Sbjct: 19 SFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAW-RPH-TSLLAAG 76
Query: 76 SFDGTVIIWKEGNSNEWIKDH----VFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVF 131
SFD TV IW + S + + + E H++ V + W+ G LA S D ++ ++
Sbjct: 77 SFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSND--GYYLATCSRDKSVWIW 134
Query: 132 TARADG-GWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVW 190
G ++ + Q H V V W PS A L S D+TV++W
Sbjct: 135 ETDESGEEYECISVLQEHSQDVKHVIWHPSEAL--------------LASSSYDDTVRIW 180
Query: 191 KLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVA--REGDQ 248
K Y+ W +C L H V + G+ + + S S+D V +W E DQ
Sbjct: 181 KDYDDDW--ECVAVLNGHEGTVWSSDFDKTEGVFR--LCSGSDDSTVRVWKYMGDDEDDQ 236
Query: 249 WE---GKVLHDF-KTPVYRVSWSLTGNILAV-ADG 278
E +L D K VY V+W G I +V ADG
Sbjct: 237 QEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADG 271
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 73/246 (29%), Positives = 108/246 (43%), Gaps = 35/246 (14%)
Query: 7 ETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQH-----LAKLSGHKGAVWEV 61
ET H+ + VA + LA S D ++ I + + LA + GH+ V V
Sbjct: 54 ETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGV 113
Query: 62 AWAHPKFGSILASCSFDGTVIIWKEGNS-NEWIKDHVFEDHKSSVNSIDWAPHELGLCLA 120
AW++ G LA+CS D +V IW+ S E+ V ++H V + W P E LA
Sbjct: 114 AWSND--GYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEA--LLA 169
Query: 121 CGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCS 180
S D + ++ D W+ + H V S + + + V +LCS
Sbjct: 170 SSSYDDTVRIWK-DYDDDWECVAVLNGHEGTVWSSDFDKT------------EGVFRLCS 216
Query: 181 GGCDNTVKVWKLYNGIWKMD-----CFPAL-QMHTDWVRDVAWAPNLGLPKSTIASASED 234
G D+TV+VWK Y G + D C L +H V +VAW N GL IAS D
Sbjct: 217 GSDDSTVRVWK-YMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFN-GL----IASVGAD 270
Query: 235 GKVIIW 240
G + ++
Sbjct: 271 GVLAVY 276
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 81/174 (46%), Gaps = 23/174 (13%)
Query: 119 LACGSSDGNISVFTARADGGWDTSRIDQ-AHPVGVTSVSWAPSTAPGALVGSGFLDPVQK 177
LA GS+D I + + + D +D+ AH + SV+W P T+
Sbjct: 27 LATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSL-------------- 72
Query: 178 LCSGGCDNTVKVW---KLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASED 234
L +G D+TV +W + + ++MD ++ H + V+ VAW+ + +A+ S D
Sbjct: 73 LAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSND----GYYLATCSRD 128
Query: 235 GKVIIWTVAREGDQWEG-KVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE 287
V IW G+++E VL + V V W + +LA + ++ V +W++
Sbjct: 129 KSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKD 182
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 82/189 (43%), Gaps = 27/189 (14%)
Query: 101 HKSSVNSIDWAPHELGLCLACGSSDGNISVFTAR--ADGGW--DTSRIDQAHPVGVTSVS 156
HK ++ S+ W PH LA GS D +S++ AD + D I + H V V+
Sbjct: 57 HKKAIRSVAWRPH--TSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVA 114
Query: 157 WAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVA 216
W+ G+ L + D +V +W+ + +C LQ H+ V+ V
Sbjct: 115 WS---------NDGYY-----LATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVI 160
Query: 217 WAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEG-KVLHDFKTPVYRVSWSLTGNILAV 275
W P+ L +AS+S D V IW D WE VL+ + V+ + T + +
Sbjct: 161 WHPSEAL----LASSSYDDTVRIWK--DYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRL 214
Query: 276 ADGNNNVTL 284
G+++ T+
Sbjct: 215 CSGSDDSTV 223
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 106/249 (42%), Gaps = 39/249 (15%)
Query: 6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAH 65
+ GH+ TV VA G LA+AS D + I + + + L GH+ V VAWA
Sbjct: 56 LSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWA- 114
Query: 66 PKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAP-HELGLCLACGSS 124
G++LA+CS D +V +W+ +E+ V H V + W P EL LA S
Sbjct: 115 -PSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQEL---LASASY 170
Query: 125 DGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCD 184
D + ++ D W + H V S+++ PS Q+L S D
Sbjct: 171 DDTVKLYREEED-DWVCCATLEGHESTVWSLAFDPSG--------------QRLASCSDD 215
Query: 185 NTVKVWKLY-----NGI--------WKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASA 231
TV++W+ Y G+ WK C + H+ + D+AW G +A+A
Sbjct: 216 RTVRIWRQYLPGNEQGVACSGSDPSWKCICTLS-GFHSRTIYDIAWCQLTG----ALATA 270
Query: 232 SEDGKVIIW 240
D + ++
Sbjct: 271 CGDDAIRVF 279
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 113/244 (46%), Gaps = 32/244 (13%)
Query: 48 LAKLSGHKGA-VWEVAWAHPKFGSILASCSFDGTVIIW-KEGNSNEWIKDHVF-EDHKSS 104
L ++ H + W +AW +P G++LASC D + IW EG+S WI V E H+ +
Sbjct: 8 LGRVPAHPDSRCWFLAW-NPA-GTLLASCGGDRRIRIWGTEGDS--WICKSVLSEGHQRT 63
Query: 105 VNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPG 164
V + W+P G LA S D ++ D ++ + H V SV+WAPS G
Sbjct: 64 VRKVAWSP--CGNYLASASFDATTCIWKKNQD-DFECVTTLEGHENEVKSVAWAPS---G 117
Query: 165 ALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLP 224
L+ + CS D +V VW++ + +C L HT V+ V W P+ L
Sbjct: 118 NLLAT---------CSR--DKSVWVWEVDEED-EYECVSVLNSHTQDVKHVVWHPSQEL- 164
Query: 225 KSTIASASEDGKVIIWTVAREGDQWE-GKVLHDFKTPVYRVSWSLTGNILAVADGNNNVT 283
+ASAS D V ++ E D W L ++ V+ +++ +G LA + V
Sbjct: 165 ---LASASYDDTVKLYR--EEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVR 219
Query: 284 LWEE 287
+W +
Sbjct: 220 IWRQ 223
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 71/149 (47%), Gaps = 21/149 (14%)
Query: 9 GHEDTVHDVAMDYYGKRLATASSDYSIKI---------IGVGNNTS----QHLAKLSG-H 54
GHE TV +A D G+RLA+ S D +++I GV + S + + LSG H
Sbjct: 192 GHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFH 251
Query: 55 KGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEW-----IKDHVFEDHKSSVNSID 109
++++AW G++ +C D + ++ NS+ + H+ + H VN +
Sbjct: 252 SRTIYDIAWCQLT-GALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVA 310
Query: 110 WAPHELGLCLACGSSDGNISVFTARADGG 138
W P E GL +C S DG ++ + + G
Sbjct: 311 WNPKEPGLLASC-SDDGEVAFWKYQRPEG 338
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 105/251 (41%), Gaps = 33/251 (13%)
Query: 9 GHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGN-NTSQHLAKLSGHKGAVWEVAWAHPK 67
GHE+ V VA G LAT S D S+ + V + + ++ L+ H V V W HP
Sbjct: 103 GHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVW-HPS 161
Query: 68 FGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGN 127
+LAS S+D TV +++E ++W+ E H+S+V S+ + P G LA S D
Sbjct: 162 -QELLASASYDDTVKLYRE-EEDDWVCCATLEGHESTVWSLAFDPS--GQRLASCSDDRT 217
Query: 128 ISVFTARADG--------GWDTS-----RIDQAHPVGVTSVSWAPSTAPGALVGSGFLDP 174
+ ++ G G D S + H + ++W T GAL + D
Sbjct: 218 VRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLT--GALATACGDDA 275
Query: 175 VQKLCSG-GCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASE 233
++ D + L + Q H+ V VAW P +AS S+
Sbjct: 276 IRVFQEDPNSDPQQPTFSLTAHL--------HQAHSQDVNCVAWNPK---EPGLLASCSD 324
Query: 234 DGKVIIWTVAR 244
DG+V W R
Sbjct: 325 DGEVAFWKYQR 335
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 70/180 (38%), Gaps = 24/180 (13%)
Query: 6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAH 65
+ H V V + LA+AS D ++K+ + A L GH+ VW +A+
Sbjct: 145 VLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAF-- 202
Query: 66 PKFGSILASCSFDGTVIIWKE------------GNSNEWIKDHVFED-HKSSVNSIDWAP 112
G LASCS D TV IW++ G+ W H ++ I W
Sbjct: 203 DPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQ 262
Query: 113 HELGLCLACGSSDGNISVFTARADGGWD------TSRIDQAHPVGVTSVSWAPSTAPGAL 166
L ACG D I VF + T+ + QAH V V+W P PG L
Sbjct: 263 LTGALATACG--DDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPK-EPGLL 319
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 104/250 (41%), Gaps = 33/250 (13%)
Query: 1 MPPQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWE 60
+P + GH +V + + + T + D I++ N + L +LSGH G VW
Sbjct: 111 VPQRTTLRGHMTSV-ITCLQFEDNYVITGADDKMIRVYDSIN--KKFLLQLSGHDGGVWA 167
Query: 61 VAWAHPKFGSILASCSFDGTVIIW--KEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLC 118
+ +AH G IL S S D TV +W K+G HVFE H S+V +D ++
Sbjct: 168 LKYAH---GGILVSGSTDRTVRVWDIKKGCCT-----HVFEGHNSTVRCLDIVEYKNIKY 219
Query: 119 LACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGAL-VGSGFLDPVQK 177
+ GS D + V+ + + +P+ V P P + V G + V+
Sbjct: 220 IVTGSRDNTLHVWKLPKESSVPDHGEEHDYPL----VFHTPEENPYFVGVLRGHMASVRT 275
Query: 178 -------LCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIAS 230
+ SG DNT+ VW + +M C L HTD + + + S
Sbjct: 276 VSGHGNIVVSGSYDNTLIVW----DVAQMKCLYILSGHTDRIYSTIYDH----ERKRCIS 327
Query: 231 ASEDGKVIIW 240
AS D + IW
Sbjct: 328 ASMDTTIRIW 337
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 102/250 (40%), Gaps = 33/250 (13%)
Query: 1 MPPQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWE 60
+P + GH +V + + + T + D I++ N + L +LSGH G VW
Sbjct: 111 VPQRTTLRGHXTSV-ITCLQFEDNYVITGADDKXIRVYDSIN--KKFLLQLSGHDGGVWA 167
Query: 61 VAWAHPKFGSILASCSFDGTVIIW--KEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLC 118
+ +AH G IL S S D TV +W K+G HVFE H S+V +D ++
Sbjct: 168 LKYAH---GGILVSGSTDRTVRVWDIKKGCCT-----HVFEGHNSTVRCLDIVEYKNIKY 219
Query: 119 LACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGAL-VGSGFLDPVQK 177
+ GS D + V+ + + +P+ V P P + V G V+
Sbjct: 220 IVTGSRDNTLHVWKLPKESSVPDHGEEHDYPL----VFHTPEENPYFVGVLRGHXASVRT 275
Query: 178 -------LCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIAS 230
+ SG DNT+ VW + + C L HTD + + + S
Sbjct: 276 VSGHGNIVVSGSYDNTLIVWD----VAQXKCLYILSGHTDRIYSTIYDH----ERKRCIS 327
Query: 231 ASEDGKVIIW 240
AS D + IW
Sbjct: 328 ASXDTTIRIW 337
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 107/245 (43%), Gaps = 30/245 (12%)
Query: 4 QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAW 63
++ GH D+V D++ D+ GK LA+ S+D +IK+ + + + GH V V+
Sbjct: 143 ERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG--FECIRTMHGHDHNVSSVS- 199
Query: 64 AHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGS 123
P G + S S D T+ +W E + +K F H+ V + P++ G +A S
Sbjct: 200 IMPN-GDHIVSASRDKTIKMW-EVQTGYCVK--TFTGHREWVRMV--RPNQDGTLIASCS 253
Query: 124 SDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALV--------GSGFLDPV 175
+D + V+ R H V +SWAP ++ ++ SG P
Sbjct: 254 NDQTVRVWVVATKECKAELR---EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPF 310
Query: 176 QKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDG 235
L SG D T+K+W + G+ C L H +WVR V + I S ++D
Sbjct: 311 --LLSGSRDKTIKMWDVSTGM----CLMTLVGHDNWVRGVLFHSGGKF----ILSCADDK 360
Query: 236 KVIIW 240
+ +W
Sbjct: 361 TLRVW 365
Score = 27.3 bits (59), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 7/83 (8%)
Query: 204 ALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYR 263
AL H V V + P S + SASED + +W E +E + L V
Sbjct: 103 ALSGHRSPVTRVIFHPVF----SVMVSASEDATIKVWDY--ETGDFE-RTLKGHTDSVQD 155
Query: 264 VSWSLTGNILAVADGNNNVTLWE 286
+S+ +G +LA + + LW+
Sbjct: 156 ISFDHSGKLLASCSADMTIKLWD 178
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/246 (23%), Positives = 103/246 (41%), Gaps = 53/246 (21%)
Query: 1 MPPQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWE 60
+ ++I TGH +V + + Y + + T SSD ++++ V NT + L L H AV
Sbjct: 163 LECKRILTGHTGSV--LCLQYDERVIITGSSDSTVRVWDV--NTGEMLNTLIHHCEAV-- 216
Query: 61 VAWAHPKFGS-ILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCL 119
H +F + ++ +CS D ++ +W + + V H+++VN +D+ +
Sbjct: 217 ---LHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKY----I 269
Query: 120 ACGSSDGNISVFTARADGGWDTS-----RIDQAHPVGVTSVSWAPSTAPGALVGSGFLDP 174
S D I V W+TS R H G+ + +
Sbjct: 270 VSASGDRTIKV--------WNTSTCEFVRTLNGHKRGIACLQYRD--------------- 306
Query: 175 VQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASED 234
+ + SG DNT+++W + G C L+ H + VR + + I S + D
Sbjct: 307 -RLVVSGSSDNTIRLWDIECGA----CLRVLEGHEELVRCIRF------DNKRIVSGAYD 355
Query: 235 GKVIIW 240
GK+ +W
Sbjct: 356 GKIKVW 361
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 91/207 (43%), Gaps = 33/207 (15%)
Query: 50 KLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDH-------VFEDHK 102
+L GH+ + ++W +P L S S D T+ +W + N K+H +F H
Sbjct: 180 RLRGHQKEGYGLSW-NPNLNGYLLSASDDHTICLW---DINATPKEHRVIDAKNIFTGHT 235
Query: 103 SSVNSIDWAPHELGLCL-ACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPST 161
+ V + W H L L + D + ++ R + S AH V +S+ P
Sbjct: 236 AVVEDVAW--HLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPY- 292
Query: 162 APGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNL 221
S F+ L +G D TV +W L N K+ F + H D + V W+P+
Sbjct: 293 -------SEFI-----LATGSADKTVALWDLRNLKLKLHSF---ESHKDEIFQVQWSPH- 336
Query: 222 GLPKSTIASASEDGKVIIWTVAREGDQ 248
++ +AS+ D ++ +W +++ G++
Sbjct: 337 --NETILASSGTDRRLHVWDLSKIGEE 361
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 85/207 (41%), Gaps = 30/207 (14%)
Query: 4 QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKII--GVGNNTSQHLAKLSGHKGAVWEV 61
+ I TGH V DVA + L + +D +I NNTS+ + H V +
Sbjct: 228 KNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCL 287
Query: 62 AWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLAC 121
++ +P ILA+ S D TV +W N +K H FE HK + + W+PH + LA
Sbjct: 288 SF-NPYSEFILATGSADKTVALWDLRNLK--LKLHSFESHKDEIFQVQWSPHNETI-LAS 343
Query: 122 GSSDGNISVFTAR-----------ADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSG 170
+D + V+ DG + I H ++ SW P+
Sbjct: 344 SGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEP-------- 395
Query: 171 FLDPVQKLCSGGCDNTVKVWKLYNGIW 197
+CS DN ++VW++ ++
Sbjct: 396 -----WIICSVSEDNIMQVWQMAENVY 417
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 91/206 (44%), Gaps = 31/206 (15%)
Query: 50 KLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIW------KEGNSNEWIKDHVFEDHKS 103
+L GH+ + ++W +P L S S D T+ +W KEG + +F H +
Sbjct: 172 RLRGHQKEGYGLSW-NPNLSGHLLSASDDHTICLWDISAVPKEGKVVD--AKTIFTGHTA 228
Query: 104 SVNSIDWAPHELGLCL-ACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTA 162
V + W H L L + D + ++ R++ S AH V +S+ P
Sbjct: 229 VVEDVSW--HLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPY-- 284
Query: 163 PGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLG 222
S F+ L +G D TV +W L N K+ F + H D + V W+P+
Sbjct: 285 ------SEFI-----LATGSADKTVALWDLRNLKLKLHSF---ESHKDEIFQVQWSPH-- 328
Query: 223 LPKSTIASASEDGKVIIWTVAREGDQ 248
++ +AS+ D ++ +W +++ G++
Sbjct: 329 -NETILASSGTDRRLNVWDLSKIGEE 353
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 86/207 (41%), Gaps = 30/207 (14%)
Query: 4 QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKII--GVGNNTSQHLAKLSGHKGAVWEV 61
+ I TGH V DV+ + L + +D +I NNTS+ + H V +
Sbjct: 220 KTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCL 279
Query: 62 AWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLAC 121
++ +P ILA+ S D TV +W N +K H FE HK + + W+PH + LA
Sbjct: 280 SF-NPYSEFILATGSADKTVALWDLRNLK--LKLHSFESHKDEIFQVQWSPHNETI-LAS 335
Query: 122 GSSDGNISVFTAR-----------ADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSG 170
+D ++V+ DG + I H ++ SW P+
Sbjct: 336 SGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEP-------- 387
Query: 171 FLDPVQKLCSGGCDNTVKVWKLYNGIW 197
+CS DN ++VW++ I+
Sbjct: 388 -----WVICSVSEDNIMQVWQMAENIY 409
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 92/222 (41%), Gaps = 32/222 (14%)
Query: 4 QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKII--GVGNNTSQHLAKLSGHKGAVWEV 61
+ I TGH V DVA + L + +D +I NNTS+ + H V +
Sbjct: 226 KNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCL 285
Query: 62 AWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLAC 121
++ +P ILA+ S D TV +W N +K H FE HK + + W+PH + LA
Sbjct: 286 SF-NPYSEFILATGSADKTVALWDLRNLK--LKLHSFESHKDEIFQVQWSPHNETI-LAS 341
Query: 122 GSSDGNISVFTAR-----------ADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSG 170
+D + V+ DG + I H ++ SW P+
Sbjct: 342 SGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEP-------- 393
Query: 171 FLDPVQKLCSGGCDNTVKVWKLYNGIWKMD--CFPALQMHTD 210
+CS DN ++VW++ ++ + PA ++ T+
Sbjct: 394 -----WIICSVSEDNIMQVWQMAENVYNDEEPEIPASELETN 430
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 92/222 (41%), Gaps = 32/222 (14%)
Query: 4 QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKII--GVGNNTSQHLAKLSGHKGAVWEV 61
+ I TGH V DVA + L + +D +I NNTS+ + H V +
Sbjct: 224 KNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCL 283
Query: 62 AWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLAC 121
++ +P ILA+ S D TV +W N +K H FE HK + + W+PH + LA
Sbjct: 284 SF-NPYSEFILATGSADKTVALWDLRNLK--LKLHSFESHKDEIFQVQWSPHNETI-LAS 339
Query: 122 GSSDGNISVFTAR-----------ADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSG 170
+D + V+ DG + I H ++ SW P+
Sbjct: 340 SGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEP-------- 391
Query: 171 FLDPVQKLCSGGCDNTVKVWKLYNGIWKMD--CFPALQMHTD 210
+CS DN ++VW++ ++ + PA ++ T+
Sbjct: 392 -----WIICSVSEDNIMQVWQMAENVYNDEEPEIPASELETN 428
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 82/206 (39%), Gaps = 28/206 (13%)
Query: 4 QKIETGHEDTVHDVAMDYYGKRL-ATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVA 62
+ I TGH V DVA + L + + D + I +NT+ + L A
Sbjct: 222 KAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCL 281
Query: 63 WAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACG 122
+P ILA+ S D TV +W N +K H FE HK + + W+PH + LA
Sbjct: 282 SFNPYSEFILATGSADKTVALWDLRNLK--LKLHTFESHKDEIFQVHWSPHNETI-LASS 338
Query: 123 SSDGNISVFTAR-----------ADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGF 171
+D ++V+ DG + I H ++ SW P+
Sbjct: 339 GTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEP--------- 389
Query: 172 LDPVQKLCSGGCDNTVKVWKLYNGIW 197
+CS DN +++W++ I+
Sbjct: 390 ----WVICSVSEDNIMQIWQMAENIY 411
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 92/206 (44%), Gaps = 31/206 (15%)
Query: 50 KLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIW------KEGNSNEWIKDHVFEDHKS 103
+L GH+ + ++W G +L S S D TV +W KEG + +F H +
Sbjct: 174 RLRGHQKEGYGLSWNSNLSGHLL-SASDDHTVCLWDINAGPKEGKIVD--AKAIFTGHSA 230
Query: 104 SVNSIDWAPHELGLCL-ACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTA 162
V + W H L L + D + ++ R++ S + AH V +S+ P
Sbjct: 231 VVEDVAW--HLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPY-- 286
Query: 163 PGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLG 222
S F+ L +G D TV +W L N K+ F + H D + V W+P+
Sbjct: 287 ------SEFI-----LATGSADKTVALWDLRNLKLKLHTF---ESHKDEIFQVHWSPH-- 330
Query: 223 LPKSTIASASEDGKVIIWTVAREGDQ 248
++ +AS+ D ++ +W +++ G++
Sbjct: 331 -NETILASSGTDRRLNVWDLSKIGEE 355
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 92/206 (44%), Gaps = 31/206 (15%)
Query: 50 KLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIW------KEGNSNEWIKDHVFEDHKS 103
+L GH+ + ++W G +L S S D TV +W KEG + +F H +
Sbjct: 174 RLRGHQKEGYGLSWNSNLSGHLL-SASDDHTVCLWDINAGPKEGKIVD--AKAIFTGHSA 230
Query: 104 SVNSIDWAPHELGLCL-ACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTA 162
V + W H L L + D + ++ R++ S + AH V +S+ P
Sbjct: 231 VVEDVAW--HLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPY-- 286
Query: 163 PGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLG 222
S F+ L +G D TV +W L N K+ F + H D + V W+P+
Sbjct: 287 ------SEFI-----LATGSADKTVALWDLRNLKLKLHTF---ESHKDEIFQVHWSPH-- 330
Query: 223 LPKSTIASASEDGKVIIWTVAREGDQ 248
++ +AS+ D ++ +W +++ G++
Sbjct: 331 -NETILASSGTDRRLNVWDLSKIGEE 355
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 80/206 (38%), Gaps = 28/206 (13%)
Query: 4 QKIETGHEDTVHDVAMDYYGKRL-ATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVA 62
+ I TGH V DVA + L + + D + I +NT+ + L A
Sbjct: 222 KAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCL 281
Query: 63 WAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACG 122
+P ILA+ S D TV +W N +K H FE HK + + W+PH + LA
Sbjct: 282 SFNPYSEFILATGSADKTVALWDLRNLK--LKLHTFESHKDEIFQVHWSPHNETI-LASS 338
Query: 123 SSDGNISVFTAR-----------ADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGF 171
+D ++V+ DG + I H ++ SW P+
Sbjct: 339 GTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEP--------- 389
Query: 172 LDPVQKLCSGGCDNTVKVWKLYNGIW 197
+CS DN ++W+ I+
Sbjct: 390 ----WVICSVSEDNIXQIWQXAENIY 411
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 98/249 (39%), Gaps = 54/249 (21%)
Query: 25 RLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIW 84
RL A S + +++G+ N + + ++ G ++ P G + S DG ++++
Sbjct: 17 RLRRAES--TRRVLGLELNKDRDVERIHGGGINTLDI---EPVEGRYMLSGGSDGVIVLY 71
Query: 85 KEGNSNEWI-----------KDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTA 133
NS+ +DH + H+ SV ++ W PH+ G+ S D + V
Sbjct: 72 DLENSSRQSYYTCKAVCSIGRDHP-DVHRYSVETVQWYPHDTGM-FTSSSFDKTLKV--- 126
Query: 134 RADGGWDTSRIDQAHPVG----VTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKV 189
WDT+ + A V S +P + LV G P +LC
Sbjct: 127 -----WDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCD--------- 172
Query: 190 WKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREG--- 246
L +G C LQ H + V+W+P +A+AS D +V +W V R
Sbjct: 173 --LKSG----SCSHILQGHRQEILAVSWSPRYDY---ILATASADSRVKLWDVRRASGCL 223
Query: 247 ---DQWEGK 252
DQ GK
Sbjct: 224 ITLDQHNGK 232
Score = 35.4 bits (80), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Query: 96 HVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSV 155
H+ + H+ + ++ W+P LA S+D + ++ R G + +DQ + +V
Sbjct: 180 HILQGHRQEILAVSWSP-RYDYILATASADSRVKLWDVRRASGCLIT-LDQHNGKKSQAV 237
Query: 156 SWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNG 195
A + G + G F L + G DN +++W NG
Sbjct: 238 ESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNG 277
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 85/195 (43%), Gaps = 29/195 (14%)
Query: 50 KLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSID 109
+L GH V +VA ++ G+ S S+D ++ +W N K F H V S+
Sbjct: 62 RLEGHSAFVSDVALSNN--GNFAVSASWDHSLRLWNLQNGQCQYK---FLGHTKDVLSVA 116
Query: 110 WAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGS 169
++P + G D + V+ + + SR AH V+ V ++PS +V
Sbjct: 117 FSPDNRQI--VSGGRDNALRVWNVKGECMHTLSR--GAHTDWVSCVRFSPSLDAPVIV-- 170
Query: 170 GFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIA 229
SGG DN VKVW L G D L+ HT++V V +P+ S A
Sbjct: 171 ----------SGGWDNLVKVWDLATGRLVTD----LKGHTNYVTSVTVSPD----GSLCA 212
Query: 230 SASEDGKVIIWTVAR 244
S+ +DG +W + +
Sbjct: 213 SSDKDGVARLWDLTK 227
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 81/195 (41%), Gaps = 27/195 (13%)
Query: 51 LSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK--EGNSNEWIKDHVFEDHKSSVNSI 108
L GH G V ++A P+F ++ S S D T+I+WK +N I H V+ +
Sbjct: 11 LKGHNGWVTQIA-TTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 69
Query: 109 DWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVG 168
SSDG ++ G WD + G T+ + T ++
Sbjct: 70 ------------VISSDGQFAL-----SGSWDGTLRLWDLTTGTTTRRFVGHTKD--VLS 110
Query: 169 SGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTI 228
F +++ SG D T+K+W G+ K + H++WV V ++PN P I
Sbjct: 111 VAFSSDNRQIVSGSRDKTIKLWNTL-GVCKYTVQD--ESHSEWVSCVRFSPNSSNP--II 165
Query: 229 ASASEDGKVIIWTVA 243
S D V +W +A
Sbjct: 166 VSCGWDKLVKVWNLA 180
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 61/134 (45%), Gaps = 29/134 (21%)
Query: 69 GSILASCSFDGTVIIWKEGNSNEWIKDHVFE-DHKSSVNSIDWAPHELGLCLACGSS--- 124
GS+ AS DG ++W + NE H++ D +N++ ++P+ LC A G S
Sbjct: 204 GSLCASGGKDGQAMLW---DLNE--GKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKI 258
Query: 125 ---DGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSG 181
+G I V + + S +A P TS++W+ A G Q L +G
Sbjct: 259 WDLEGKIIVDELKQEV---ISTSSKAEPPQCTSLAWS---ADG-----------QTLFAG 301
Query: 182 GCDNTVKVWKLYNG 195
DN V+VW++ G
Sbjct: 302 YTDNLVRVWQVTIG 315
Score = 31.2 bits (69), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 55/255 (21%), Positives = 95/255 (37%), Gaps = 79/255 (30%)
Query: 3 PQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVA 62
PQ+ GH V DV + G+ + S D ++++ + T+ + GH V VA
Sbjct: 55 PQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTR--RFVGHTKDVLSVA 112
Query: 63 WAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACG 122
++ + S S D T+ +W + LG+C
Sbjct: 113 FSSDN--RQIVSGSRDKTIKLW----------------------------NTLGVC---- 138
Query: 123 SSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGG 182
+T + D++H V+ V ++P+++ +V G+
Sbjct: 139 -------KYTVQ----------DESHSEWVSCVRFSPNSSNPIIVSCGW----------- 170
Query: 183 CDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTV 242
D VKVW L N K + HT ++ V +P+ S AS +DG+ ++W
Sbjct: 171 -DKLVKVWNLANCKLKTNHIG----HTGYLNTVTVSPD----GSLCASGGKDGQAMLW-- 219
Query: 243 AREGDQWEGKVLHDF 257
D EGK L+
Sbjct: 220 ----DLNEGKHLYTL 230
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 198 KMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVARE 245
+M L+ H WV +A P I SAS D +I+W + R+
Sbjct: 4 QMTLRGTLKGHNGWVTQIATTPQF---PDMILSASRDKTIIMWKLTRD 48
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 81/195 (41%), Gaps = 27/195 (13%)
Query: 51 LSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK--EGNSNEWIKDHVFEDHKSSVNSI 108
L GH G V ++A P+F ++ S S D T+I+WK +N I H V+ +
Sbjct: 34 LKGHNGWVTQIA-TTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 92
Query: 109 DWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVG 168
SSDG ++ G WD + G T+ + T ++
Sbjct: 93 ------------VISSDGQFAL-----SGSWDGTLRLWDLTTGTTTRRFVGHTKD--VLS 133
Query: 169 SGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTI 228
F +++ SG D T+K+W G+ K + H++WV V ++PN P I
Sbjct: 134 VAFSSDNRQIVSGSRDKTIKLWNTL-GVCKYTVQD--ESHSEWVSCVRFSPNSSNP--II 188
Query: 229 ASASEDGKVIIWTVA 243
S D V +W +A
Sbjct: 189 VSCGWDKLVKVWNLA 203
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 61/134 (45%), Gaps = 29/134 (21%)
Query: 69 GSILASCSFDGTVIIWKEGNSNEWIKDHVFE-DHKSSVNSIDWAPHELGLCLACGSS--- 124
GS+ AS DG ++W + NE H++ D +N++ ++P+ LC A G S
Sbjct: 227 GSLCASGGKDGQAMLW---DLNE--GKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKI 281
Query: 125 ---DGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSG 181
+G I V + + S +A P TS++W+ A G Q L +G
Sbjct: 282 WDLEGKIIVDELKQEV---ISTSSKAEPPQCTSLAWS---ADG-----------QTLFAG 324
Query: 182 GCDNTVKVWKLYNG 195
DN V+VW++ G
Sbjct: 325 YTDNLVRVWQVTIG 338
Score = 31.2 bits (69), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 56/255 (21%), Positives = 97/255 (38%), Gaps = 79/255 (30%)
Query: 3 PQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVA 62
PQ+ GH V DV + G+ + S D ++++ + T+ + GH V VA
Sbjct: 78 PQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTR--RFVGHTKDVLSVA 135
Query: 63 WAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACG 122
++ + S S D T+ +W + LG+C
Sbjct: 136 FSSDN--RQIVSGSRDKTIKLW----------------------------NTLGVC---- 161
Query: 123 SSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGG 182
+T + D++H V+ V ++P+++ +P+ + S G
Sbjct: 162 -------KYTVQ----------DESHSEWVSCVRFSPNSS----------NPI--IVSCG 192
Query: 183 CDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTV 242
D VKVW L N K + HT ++ V +P+ S AS +DG+ ++W
Sbjct: 193 WDKLVKVWNLANCKLKTNHIG----HTGYLNTVTVSPD----GSLCASGGKDGQAMLW-- 242
Query: 243 AREGDQWEGKVLHDF 257
D EGK L+
Sbjct: 243 ----DLNEGKHLYTL 253
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 198 KMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVARE 245
+M L+ H WV +A P I SAS D +I+W + R+
Sbjct: 27 QMTLRGTLKGHNGWVTQIATTPQF---PDMILSASRDKTIIMWKLTRD 71
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 7/116 (6%)
Query: 10 HEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFG 69
H D V+ G+R+A+ +D ++++ T + L ++ H+ V A++
Sbjct: 620 HTDAVYHACFSEDGQRIASCGADKTLQVFKA--ETGEKLLEIKAHEDEVLCCAFSTD--D 675
Query: 70 SILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSD 125
+A+CS D V IW NS H +++H VN + L LA GSSD
Sbjct: 676 RFIATCSVDKKVKIW---NSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSD 728
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 49/232 (21%), Positives = 88/232 (37%), Gaps = 47/232 (20%)
Query: 26 LATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFG---SILASCSFDGTVI 82
LAT SSD +K+ + ++ + GH +V H +F +LASCS DGT+
Sbjct: 722 LATGSSDCFLKLWDLNQKECRN--TMFGHTNSV-----NHCRFSPDDKLLASCSADGTLK 774
Query: 83 IWKEGNSNEW----IKDHVF------EDHKSSVNSIDWAPHELGLCLACGSSDGNISVFT 132
+W ++NE +K ED + V W+ + +A + I +F
Sbjct: 775 LWDATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVA---AKNKIFLFD 831
Query: 133 ARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKL 192
G I H + ++P + S + V++W
Sbjct: 832 IHTSGLL--GEIHTGHHSTIQYCDFSPQNHLAVVALSQY--------------CVELWNT 875
Query: 193 YNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAR 244
+ DC + H WV V ++P+ S+ ++S+D + +W +
Sbjct: 876 DSRSKVADC----RGHLSWVHGVMFSPD----GSSFLTSSDDQTIRLWETKK 919
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 76/215 (35%), Gaps = 32/215 (14%)
Query: 10 HEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFG 69
H+ TV + K L ++S D I+ V N L GH+ V +
Sbjct: 1008 HKKTVWHIQFTADEKTLISSSDDAEIQ---VWNWQLDKCIFLRGHQETVKDFRLLK---N 1061
Query: 70 SILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNIS 129
S L S SFDGTV +W N+ D+ H+ G L+C S
Sbjct: 1062 SRLLSWSFDGTVKVWNIITGNK---------------EKDFVCHQ-GTVLSCDISHDATK 1105
Query: 130 VFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKV 189
+ AD D P+ G + S F L +G + +++
Sbjct: 1106 FSSTSADKTAKIWSFDLLLPLH------ELRGHNGCVRCSAFSVDSTLLATGDDNGEIRI 1159
Query: 190 WKLYNGIWKMDCFPALQ----MHTDWVRDVAWAPN 220
W + NG C P + H WV D+ ++P+
Sbjct: 1160 WNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPD 1194
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 93/232 (40%), Gaps = 41/232 (17%)
Query: 9 GHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKF 68
GH TV M + KR+ + S D ++++ + T Q L L GH AV V +
Sbjct: 197 GHTSTVR--CMHLHEKRVVSGSRDATLRVWDI--ETGQCLHVLMGHVAAVRCVQYD---- 248
Query: 69 GSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNI 128
G + S ++D V +W H + H + V S+ + G+ + GS D +I
Sbjct: 249 GRRVVSGAYDFMVKVWDPETETCL---HTLQGHTNRVYSLQFD----GIHVVSGSLDTSI 301
Query: 129 SVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVK 188
V WD + H + T +L SG L SG D+TVK
Sbjct: 302 RV--------WDVETGNCIHTL----------TGHQSLT-SGMELKDNILVSGNADSTVK 342
Query: 189 VWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIW 240
+W + G C LQ + + L K+ + ++S+DG V +W
Sbjct: 343 IWDIKTG----QCLQTLQGPN---KHQSAVTCLQFNKNFVITSSDDGTVKLW 387
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/292 (22%), Positives = 104/292 (35%), Gaps = 60/292 (20%)
Query: 1 MPPQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWE 60
+ K+ GH+D V + + G R+ + S D ++K+ T + L L GH G V
Sbjct: 108 LKSPKVLKGHDDHV-ITCLQFCGNRIVSGSDDNTLKVWSA--VTGKCLRTLVGHTGGV-- 162
Query: 61 VAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLA 120
W+ +I+ S S D T+ +W + E I H H S+V + +
Sbjct: 163 --WSSQMRDNIIISGSTDRTLKVW-NAETGECI--HTLYGHTSTVRCMHLHEKR----VV 213
Query: 121 CGSSDGNISVFTARADGGWDTS-----RIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPV 175
GS D + V WD + H V V +
Sbjct: 214 SGSRDATLRV--------WDIETGQCLHVLMGHVAAVRCVQYDG---------------- 249
Query: 176 QKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDG 235
+++ SG D VKVW C LQ HT+ V +L + S S D
Sbjct: 250 RRVVSGAYDFMVKVWDPETET----CLHTLQGHTNRV------YSLQFDGIHVVSGSLDT 299
Query: 236 KVIIWTVAREGDQWEGKVLHDFKTPVYRVS-WSLTGNILAVADGNNNVTLWE 286
+ +W V G +H S L NIL + ++ V +W+
Sbjct: 300 SIRVWDVE------TGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWD 345
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 96/237 (40%), Gaps = 29/237 (12%)
Query: 10 HEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFG 69
H+D V +++ G + + D+S+K+ + L + H V VA A P
Sbjct: 138 HDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAV--LKSYNAHSSEVNCVA-ACPGKD 194
Query: 70 SILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNIS 129
+I SC DG +++W + F + S+ W P E ACG GN+S
Sbjct: 195 TIFLSCGEDGRILLWDTRKPKPATRID-FCASDTIPTSVTWHP-EKDDTFACGDETGNVS 252
Query: 130 VFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKV 189
+ + D+++ H +T ++++ ++P FL + + C TV V
Sbjct: 253 LVNIKNP---DSAQTSAVHSQNITGLAYSYHSSP-------FLASISEDC------TVAV 296
Query: 190 WKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREG 246
+ F L H D+V VAW+P L S + D KV+ + EG
Sbjct: 297 LDADFS----EVFRDLS-HRDFVTGVAWSP---LDHSKFTTVGWDHKVLHHHLPSEG 345
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 51/116 (43%), Gaps = 7/116 (6%)
Query: 10 HEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFG 69
H D V+ G+R+A+ +D ++++ T + L + H+ V A++
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVFKA--ETGEKLLDIKAHEDEVLCCAFSSD--D 676
Query: 70 SILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSD 125
S +A+CS D V IW H +++H VN + L LA GS+D
Sbjct: 677 SYIATCSADKKVKIWDSATGKLV---HTYDEHSEQVNCCHFTNKSNHLLLATGSND 729
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/233 (21%), Positives = 96/233 (41%), Gaps = 49/233 (21%)
Query: 26 LATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFG---SILASCSFDGTVI 82
LAT S+D+ +K+ + ++ + GH +V H +F +LASCS DGT+
Sbjct: 723 LATGSNDFFLKLWDLNQKECRN--TMFGHTNSV-----NHCRFSPDDELLASCSADGTLR 775
Query: 83 IWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACG--SSDGN---------ISVF 131
+W ++NE +V K S + P ++ + + C S+DG+ + +F
Sbjct: 776 LWDVRSANERKSINV----KRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLF 831
Query: 132 TARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWK 191
G + I H + ++P + S + V++W
Sbjct: 832 DIHTSGLL--AEIHTGHHSTIQYCDFSPYDHLAVIALSQY--------------CVELWN 875
Query: 192 LYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAR 244
+ + + DC + H WV V ++P+ S+ +AS+D + +W +
Sbjct: 876 IDSRLKVADC----RGHLSWVHGVMFSPD----GSSFLTASDDQTIRVWETKK 920
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 75/356 (21%), Positives = 125/356 (35%), Gaps = 110/356 (30%)
Query: 5 KIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWA 64
+I TGH T+ Y A S Y +++ + ++ +A GH ++W
Sbjct: 841 EIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNI--DSRLKVADCRGH------LSWV 892
Query: 65 HPKF----GSILASCSFDGTVIIWKE----GNSNEWIK---DHVFEDHKSSV-------- 105
H GS + S D T+ +W+ NS +K D VF+++++ V
Sbjct: 893 HGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRG 952
Query: 106 --------NSIDWAPHELGLC---------LACGSSDGNISVFTARADGGWDTSRIDQAH 148
ID+ P C +A G DG I + + + + H
Sbjct: 953 LQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSG---VGH 1009
Query: 149 PVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMH 208
V + + TA G + L S D+ ++VW W+ + LQ H
Sbjct: 1010 KKAVRHIQF---TADG-----------KTLISSSEDSVIQVWN-----WQTGDYVFLQAH 1050
Query: 209 TDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTV-----AREGDQWEGKVL--------- 254
+ V+D L S + S S DG V +W V R+ +G VL
Sbjct: 1051 QETVKDFRL-----LQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDAT 1105
Query: 255 ---------------HDFKTPVYRV----------SWSLTGNILAVADGNNNVTLW 285
D +P++ + ++SL G +LA D N + +W
Sbjct: 1106 KFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIW 1161
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/294 (20%), Positives = 109/294 (37%), Gaps = 69/294 (23%)
Query: 36 KIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNE---- 91
++ +G + L GH V + W K + S S DG VI+W +N+
Sbjct: 45 RVEALGQFVMKTRRTLKGHGNKVLCMDWCKDK--RRIVSSSQDGKVIVWDSFTTNKEHAV 102
Query: 92 -----WIKDHVFE-----------DHKSSVNSIDWAPHE------------LGLCLACGS 123
W+ + D+K SV + + +E AC
Sbjct: 103 TMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSF 162
Query: 124 SDGNISVFTARADGG---WD--TSRIDQA---HPVGVTSVSWAPSTAPGALVGSGFLDPV 175
++ ++ + TA DG WD + ++ Q+ H V + APS V
Sbjct: 163 TNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFV-------- 214
Query: 176 QKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDG 235
SGGCD VW + +G C A + H V V + P+ AS S+D
Sbjct: 215 ----SGGCDKKAMVWDMRSG----QCVQAFETHESDVNSVRYYPS----GDAFASGSDDA 262
Query: 236 KVIIWTVAREGDQWEGKVLHDFKTPVY---RVSWSLTGNILAVADGNNNVTLWE 286
++ + + + ++ ++ ++ V +SL+G +L + + +W+
Sbjct: 263 TCRLYDLRADREV----AIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWD 312
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 51/116 (43%), Gaps = 7/116 (6%)
Query: 10 HEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFG 69
H D V+ G+R+A+ +D ++++ T + L + H+ V A++
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKA--ETGEKLLDIKAHEDEVLCCAFSSD--D 669
Query: 70 SILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSD 125
S +A+CS D V IW H +++H VN + L LA GS+D
Sbjct: 670 SYIATCSADKKVKIWDSATGKLV---HTYDEHSEQVNCCHFTNKSNHLLLATGSND 722
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/233 (21%), Positives = 96/233 (41%), Gaps = 49/233 (21%)
Query: 26 LATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFG---SILASCSFDGTVI 82
LAT S+D+ +K+ + ++ + GH +V H +F +LASCS DGT+
Sbjct: 716 LATGSNDFFLKLWDLNQKECRN--TMFGHTNSV-----NHCRFSPDDELLASCSADGTLR 768
Query: 83 IWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACG--SSDGN---------ISVF 131
+W ++NE +V K S + P ++ + + C S+DG+ + +F
Sbjct: 769 LWDVRSANERKSINV----KRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLF 824
Query: 132 TARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWK 191
G + I H + ++P + S + V++W
Sbjct: 825 DIHTSGLL--AEIHTGHHSTIQYCDFSPYDHLAVIALSQY--------------CVELWN 868
Query: 192 LYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAR 244
+ + + DC + H WV V ++P+ S+ +AS+D + +W +
Sbjct: 869 IDSRLKVADC----RGHLSWVHGVMFSPD----GSSFLTASDDQTIRVWETKK 913
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 75/356 (21%), Positives = 125/356 (35%), Gaps = 110/356 (30%)
Query: 5 KIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWA 64
+I TGH T+ Y A S Y +++ + ++ +A GH ++W
Sbjct: 834 EIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNI--DSRLKVADCRGH------LSWV 885
Query: 65 HPKF----GSILASCSFDGTVIIWKE----GNSNEWIK---DHVFEDHKSSV-------- 105
H GS + S D T+ +W+ NS +K D VF+++++ V
Sbjct: 886 HGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRG 945
Query: 106 --------NSIDWAPHELGLC---------LACGSSDGNISVFTARADGGWDTSRIDQAH 148
ID+ P C +A G DG I + + + + H
Sbjct: 946 LQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSG---VGH 1002
Query: 149 PVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMH 208
V + + TA G + L S D+ ++VW W+ + LQ H
Sbjct: 1003 KKAVRHIQF---TADG-----------KTLISSSEDSVIQVWN-----WQTGDYVFLQAH 1043
Query: 209 TDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTV-----AREGDQWEGKVL--------- 254
+ V+D L S + S S DG V +W V R+ +G VL
Sbjct: 1044 QETVKDFRL-----LQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDAT 1098
Query: 255 ---------------HDFKTPVYRV----------SWSLTGNILAVADGNNNVTLW 285
D +P++ + ++SL G +LA D N + +W
Sbjct: 1099 KFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIW 1154
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 87/209 (41%), Gaps = 33/209 (15%)
Query: 50 KLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSID 109
+L+GH V +V + G S S+DG + +W + F H V S+
Sbjct: 425 RLTGHSHFVEDVVLSSD--GQFALSGSWDGELRLWDLAAG---VSTRRFVGHTKDVLSVA 479
Query: 110 WAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGS 169
++ + A S D I ++ + + S + H V+ V ++P+T
Sbjct: 480 FSLDNRQIVSA--SRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNT-------- 529
Query: 170 GFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIA 229
L P + S D TVKVW L N + L HT +V VA +P+ S A
Sbjct: 530 --LQPT--IVSASWDKTVKVWNLSNCKLR----STLAGHTGYVSTVAVSPD----GSLCA 577
Query: 230 SASEDGKVIIWTVAREGDQWEGKVLHDFK 258
S +DG V++W +A EGK L+ +
Sbjct: 578 SGGKDGVVLLWDLA------EGKKLYSLE 600
Score = 35.4 bits (80), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 72/175 (41%), Gaps = 24/175 (13%)
Query: 71 ILASCSFDGTVIIWKEGNSNEW--IKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNI 128
I+ S S D ++I+WK ++ + H V + + G GS DG +
Sbjct: 397 IIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSD--GQFALSGSWDGEL 454
Query: 129 SVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVK 188
++ A G T R H V SV+++ LD Q + S D T+K
Sbjct: 455 RLWDLAA--GVSTRRF-VGHTKDVLSVAFS-------------LDNRQ-IVSASRDRTIK 497
Query: 189 VWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVA 243
+W G K + H DWV V ++PN P TI SAS D V +W ++
Sbjct: 498 LWNTL-GECKYTISEGGEGHRDWVSCVRFSPNTLQP--TIVSASWDKTVKVWNLS 549
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 74/195 (37%), Gaps = 27/195 (13%)
Query: 4 QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAW 63
Q+ TGH V DV + G+ + S D +++ + S + GH V VA+
Sbjct: 423 QRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTR--RFVGHTKDVLSVAF 480
Query: 64 AHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGS 123
+ + S S D T+ +W ++ E H+ V+ + ++P+ L + S
Sbjct: 481 SLDN--RQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSAS 538
Query: 124 SDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPG--ALVGSGFLDPVQKLC-S 180
D + V W+ S ST G V + + P LC S
Sbjct: 539 WDKTVKV--------WNLSNCKLR------------STLAGHTGYVSTVAVSPDGSLCAS 578
Query: 181 GGCDNTVKVWKLYNG 195
GG D V +W L G
Sbjct: 579 GGKDGVVLLWDLAEG 593
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 89/231 (38%), Gaps = 31/231 (13%)
Query: 65 HPKFGSILASCSFDGTVIIWKEGNSNEWIKD-HVFEDHKSSVNSIDWAPHELGLCLACGS 123
+PKF +++ S G ++ G + K+ + H + V I W PH + +A GS
Sbjct: 43 NPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNV-IASGS 101
Query: 124 SDGNISVFTARADGGWDTSRID-----QAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKL 178
D + V+ DGG + + H V V+W P+ L
Sbjct: 102 EDCTVMVWEI-PDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQ-------------NVL 147
Query: 179 CSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVI 238
S GCDN + VW + G + P +H D + V W+ + L I ++ D +V
Sbjct: 148 LSAGCDNVILVWDVGTGAAVLTLGP--DVHPDTIYSVDWSRDGAL----ICTSCRDKRVR 201
Query: 239 IWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVA---DGNNNVTLWE 286
+ + E H+ PV+ V S G IL V LW+
Sbjct: 202 VIEPRKGTVVAEKDRPHEGTRPVHAVFVS-EGKILTTGFSRMSERQVALWD 251
>pdb|3DWL|C Chain C, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
pdb|3DWL|H Chain H, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
Length = 377
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Query: 86 EGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRID 145
E + N W F DH V +DWAP + C S D N V+ R DG W + +
Sbjct: 39 EQDGNGWKHARTFSDHDKIVTCVDWAPKS-NRIVTC-SQDRNAYVYEKRPDGTWKQTLVL 96
Query: 146 QAHPVGVTSVSWAPSTAPGALVGSG 170
T V W+P+ A VGSG
Sbjct: 97 LRLNRAATFVRWSPNEDKFA-VGSG 120
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 31/159 (19%), Positives = 63/159 (39%), Gaps = 6/159 (3%)
Query: 15 HDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILAS 74
++ A + T ++ +++ N +H S H V V WA PK I+ +
Sbjct: 15 YEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWA-PKSNRIV-T 72
Query: 75 CSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTAR 134
CS D ++++ W + V + + W+P+E + G+ ++ F
Sbjct: 73 CSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQE 132
Query: 135 ADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLD 173
D W + + + + S+ W P+ L+ +G D
Sbjct: 133 ND-WWVSKHLKRPLRSTILSLDWHPN---NVLLAAGCAD 167
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 82 IIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTA 133
+ + E ++ W+ H+ +S++ S+DW P+ + LA G +D V +A
Sbjct: 126 VCYFEQENDWWVSKHLKRPLRSTILSLDWHPN--NVLLAAGCADRKAYVLSA 175
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 65/276 (23%), Positives = 104/276 (37%), Gaps = 46/276 (16%)
Query: 40 VGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFE 99
VG + L GH ++ + W +L S S DG +IIW +N K H
Sbjct: 51 VGRIQMRTRRTLRGHLAKIYAMHWGTDS--RLLVSASQDGKLIIWDSYTTN---KVHAIP 105
Query: 100 DHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARA-DGGWDTSRIDQAHPVGVTSVSWA 158
S V + +AP G +ACG D S++ + +G SR H ++ +
Sbjct: 106 LRSSWVMTCAYAPS--GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL 163
Query: 159 PS----TAPG----AL------------------VGSGFLDPVQKL-CSGGCDNTVKVWK 191
T+ G AL V S L P +L SG CD + K+W
Sbjct: 164 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 223
Query: 192 LYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEG 251
+ G+ C H + + + PN + A+ S+D ++ + DQ
Sbjct: 224 VREGM----CRQTFTGHESDINAICFFPN----GNAFATGSDDATCRLFDL--RADQELM 273
Query: 252 KVLHD-FKTPVYRVSWSLTGNILAVADGNNNVTLWE 286
HD + VS+S +G +L + N +W+
Sbjct: 274 TYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD 309
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 65/276 (23%), Positives = 104/276 (37%), Gaps = 46/276 (16%)
Query: 40 VGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFE 99
VG + L GH ++ + W +L S S DG +IIW +N K H
Sbjct: 40 VGRIQMRTRRTLRGHLAKIYAMHWGTDS--RLLVSASQDGKLIIWDSYTTN---KVHAIP 94
Query: 100 DHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARA-DGGWDTSRIDQAHPVGVTSVSWA 158
S V + +AP G +ACG D S++ + +G SR H ++ +
Sbjct: 95 LRSSWVMTCAYAPS--GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL 152
Query: 159 PS----TAPG----AL------------------VGSGFLDPVQKL-CSGGCDNTVKVWK 191
T+ G AL V S L P +L SG CD + K+W
Sbjct: 153 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 212
Query: 192 LYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEG 251
+ G+ C H + + + PN + A+ S+D ++ + DQ
Sbjct: 213 VREGM----CRQTFTGHESDINAICFFPN----GNAFATGSDDATCRLFDL--RADQELM 262
Query: 252 KVLHD-FKTPVYRVSWSLTGNILAVADGNNNVTLWE 286
HD + VS+S +G +L + N +W+
Sbjct: 263 TYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD 298
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 65/276 (23%), Positives = 104/276 (37%), Gaps = 46/276 (16%)
Query: 40 VGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFE 99
VG + L GH ++ + W +L S S DG +IIW +N K H
Sbjct: 40 VGRIQMRTRRTLRGHLAKIYAMHWGTDS--RLLVSASQDGKLIIWDSYTTN---KVHAIP 94
Query: 100 DHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARA-DGGWDTSRIDQAHPVGVTSVSWA 158
S V + +AP G +ACG D S++ + +G SR H ++ +
Sbjct: 95 LRSSWVMTCAYAPS--GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL 152
Query: 159 PS----TAPG----AL------------------VGSGFLDPVQKL-CSGGCDNTVKVWK 191
T+ G AL V S L P +L SG CD + K+W
Sbjct: 153 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 212
Query: 192 LYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEG 251
+ G+ C H + + + PN + A+ S+D ++ + DQ
Sbjct: 213 VREGM----CRQTFTGHESDINAICFFPN----GNAFATGSDDATCRLFDL--RADQELM 262
Query: 252 KVLHD-FKTPVYRVSWSLTGNILAVADGNNNVTLWE 286
HD + VS+S +G +L + N +W+
Sbjct: 263 TYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD 298
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 65/276 (23%), Positives = 104/276 (37%), Gaps = 46/276 (16%)
Query: 40 VGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFE 99
VG + L GH ++ + W +L S S DG +IIW +N K H
Sbjct: 40 VGRIQMRTRRTLRGHLAKIYAMHWGTDS--RLLLSASQDGKLIIWDSYTTN---KVHAIP 94
Query: 100 DHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARA-DGGWDTSRIDQAHPVGVTSVSWA 158
S V + +AP G +ACG D S++ + +G SR H ++ +
Sbjct: 95 LRSSWVMTCAYAPS--GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL 152
Query: 159 PS----TAPG----AL------------------VGSGFLDPVQKL-CSGGCDNTVKVWK 191
T+ G AL V S L P +L SG CD + K+W
Sbjct: 153 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 212
Query: 192 LYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEG 251
+ G+ C H + + + PN + A+ S+D ++ + DQ
Sbjct: 213 VREGM----CRQTFTGHESDINAICFFPN----GNAFATGSDDATCRLFDL--RADQELM 262
Query: 252 KVLHD-FKTPVYRVSWSLTGNILAVADGNNNVTLWE 286
HD + VS+S +G +L + N +W+
Sbjct: 263 TYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD 298
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 65/276 (23%), Positives = 104/276 (37%), Gaps = 46/276 (16%)
Query: 40 VGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFE 99
VG + L GH ++ + W +L S S DG +IIW +N K H
Sbjct: 40 VGRIQMRTRRTLRGHLAKIYAMHWGTDS--RLLLSASQDGKLIIWDSYTTN---KVHAIP 94
Query: 100 DHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARA-DGGWDTSRIDQAHPVGVTSVSWA 158
S V + +AP G +ACG D S++ + +G SR H ++ +
Sbjct: 95 LRSSWVMTCAYAPS--GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL 152
Query: 159 PS----TAPG----AL------------------VGSGFLDPVQKL-CSGGCDNTVKVWK 191
T+ G AL V S L P +L SG CD + K+W
Sbjct: 153 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 212
Query: 192 LYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEG 251
+ G+ C H + + + PN + A+ S+D ++ + DQ
Sbjct: 213 VREGM----CRQTFTGHESDINAICFFPN----GNAFATGSDDATCRLFDL--RADQELM 262
Query: 252 KVLHD-FKTPVYRVSWSLTGNILAVADGNNNVTLWE 286
HD + VS+S +G +L + N +W+
Sbjct: 263 TYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD 298
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 106/261 (40%), Gaps = 49/261 (18%)
Query: 12 DTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSI 71
+ + VA G LA +S +++ V + L ++ H V ++W I
Sbjct: 148 EYISSVAWIKEGNYLAVGTSSAEVQLWDV--QQQKRLRNMTSHSARVGSLSWN----SYI 201
Query: 72 LASCSFDGTVIIWKEGNSNEWIKDH---VFEDHKSSVNSIDWAPHELGLCLACGSSDGNI 128
L+S S G + + + + +H H V + WAP G LA G +D +
Sbjct: 202 LSSGSRSGHI-----HHHDVRVAEHHVATLSGHSQEVCGLRWAPD--GRHLASGGNDNLV 254
Query: 129 SVF-TARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLD---PVQKLCSGGCD 184
+V+ +A +GGW + H V +V+W P + G G D + +CSG C
Sbjct: 255 NVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL 314
Query: 185 NTVK--------VW-----KLYNG---------IWK---MDCFPALQMHTDWVRDVAWAP 219
+ V +W +L +G IWK M L+ HT V + +P
Sbjct: 315 SAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP 374
Query: 220 NLGLPKSTIASASEDGKVIIW 240
+ +T+ASA+ D + +W
Sbjct: 375 D----GATVASAAADETLRLW 391
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 106/261 (40%), Gaps = 49/261 (18%)
Query: 12 DTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSI 71
+ + VA G LA +S +++ V + L ++ H V ++W I
Sbjct: 68 EYISSVAWIKEGNYLAVGTSSAEVQLWDV--QQQKRLRNMTSHSARVGSLSWN----SYI 121
Query: 72 LASCSFDGTVIIWKEGNSNEWIKDH---VFEDHKSSVNSIDWAPHELGLCLACGSSDGNI 128
L+S S G + + + + +H H V + WAP G LA G +D +
Sbjct: 122 LSSGSRSGHI-----HHHDVRVAEHHVATLSGHSQEVCGLRWAPD--GRHLASGGNDNLV 174
Query: 129 SVF-TARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLD---PVQKLCSGGCD 184
+V+ +A +GGW + H V +V+W P + G G D + +CSG C
Sbjct: 175 NVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL 234
Query: 185 NTVK--------VW-----KLYNG---------IWK---MDCFPALQMHTDWVRDVAWAP 219
+ V +W +L +G IWK M L+ HT V + +P
Sbjct: 235 SAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP 294
Query: 220 NLGLPKSTIASASEDGKVIIW 240
+ +T+ASA+ D + +W
Sbjct: 295 D----GATVASAAADETLRLW 311
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 106/261 (40%), Gaps = 49/261 (18%)
Query: 12 DTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSI 71
+ + VA G LA +S +++ V + L ++ H V ++W I
Sbjct: 159 EYISSVAWIKEGNYLAVGTSSAEVQLWDV--QQQKRLRNMTSHSARVGSLSWN----SYI 212
Query: 72 LASCSFDGTVIIWKEGNSNEWIKDH---VFEDHKSSVNSIDWAPHELGLCLACGSSDGNI 128
L+S S G + + + + +H H V + WAP G LA G +D +
Sbjct: 213 LSSGSRSGHI-----HHHDVRVAEHHVATLSGHSQEVCGLRWAPD--GRHLASGGNDNLV 265
Query: 129 SVF-TARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLD---PVQKLCSGGCD 184
+V+ +A +GGW + H V +V+W P + G G D + +CSG C
Sbjct: 266 NVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL 325
Query: 185 NTVK--------VW-----KLYNG---------IWK---MDCFPALQMHTDWVRDVAWAP 219
+ V +W +L +G IWK M L+ HT V + +P
Sbjct: 326 SAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP 385
Query: 220 NLGLPKSTIASASEDGKVIIW 240
+ +T+ASA+ D + +W
Sbjct: 386 D----GATVASAAADETLRLW 402
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 88/231 (38%), Gaps = 31/231 (13%)
Query: 65 HPKFGSILASCSFDGTVIIWKEGNSNEWIKD-HVFEDHKSSVNSIDWAPHELGLCLACGS 123
+PKF +++ S G ++ G + K+ + H + V I W PH + +A GS
Sbjct: 43 NPKFMALIXEASGGGAFLVLPLGKTGRVDKNVPLVXGHTAPVLDIAWXPHNDNV-IASGS 101
Query: 124 SDGNISVFTARADGGWDTSRID-----QAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKL 178
D + V+ DGG + + H V V+W P+ L
Sbjct: 102 EDCTVMVWEI-PDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQ-------------NVL 147
Query: 179 CSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVI 238
S G DN + VW + G + P +H D + V W+ + L I ++ D +V
Sbjct: 148 LSAGXDNVILVWDVGTGAAVLTLGP--DVHPDTIYSVDWSRDGAL----ICTSCRDKRVR 201
Query: 239 IWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVA---DGNNNVTLWE 286
+ + E H+ PV+ V S G IL V LW+
Sbjct: 202 VIEPRKGTVVAEKDRPHEGTRPVHAVFVS-EGKILTTGFSRMSERQVALWD 251
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 71/173 (41%), Gaps = 22/173 (12%)
Query: 9 GHEDTVHDVA-MDYYGKRLATASSDYSIKI-----IGVGNNTSQHLAKLSGHKGAVWEVA 62
GH V D+A + +A+ S D ++ + G+ + + L GH V VA
Sbjct: 79 GHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 63 WAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACG 122
W HP ++L S D +++W G + + H ++ S+DW+ +C +C
Sbjct: 139 W-HPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGP-DVHPDTIYSVDWSRDGALICTSC- 195
Query: 123 SSDGNISVFTARADGGWDTSRIDQAH----PVGVTSVSWAPSTAPGALVGSGF 171
D + V R G + D+ H PV VS G ++ +GF
Sbjct: 196 -RDKRVRVIEPRK--GTVVAEKDRPHEGTRPVHAVFVSE------GKILTTGF 239
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 84/210 (40%), Gaps = 26/210 (12%)
Query: 10 HEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFG 69
H+D V V++ G + + S D IK+ + L+ H V VA A P
Sbjct: 126 HDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVV--LSSYRAHAAQVTCVA-ASPHKD 182
Query: 70 SILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNIS 129
S+ SCS D +++W + + S+ W P + + G +G +S
Sbjct: 183 SVFLSCSEDNRILLW-DTRCPKPASQIGCSAPGYLPTSLAWHPQQSEV-FVFGDENGTVS 240
Query: 130 VFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKV 189
+ ++ +S + H VT + ++P + P FL + + CS ++ +
Sbjct: 241 LVDTKSTSCVLSSAV---HSQCVTGLVFSPHSVP-------FLASLSEDCSLAVLDS-SL 289
Query: 190 WKLYNGIWKMDCFPALQMHTDWVRDVAWAP 219
+L+ Q H D+VRD W+P
Sbjct: 290 SELFRS----------QAHRDFVRDATWSP 309
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 48/116 (41%), Gaps = 16/116 (13%)
Query: 178 LCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKS--TIASASEDG 235
+ SG D T+KVW + K C L H DWV V PN TI SA D
Sbjct: 122 IISGSRDKTIKVWTI-----KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 236 KVIIWTVAREGDQWEGKVLHDF---KTPVYRVSWSLTGNILAVADGNNNVTLWEEA 288
V W + + ++ DF + + ++ S G ++A A + + LW A
Sbjct: 177 XVKAWNLN------QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLA 226
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 84/221 (38%), Gaps = 47/221 (21%)
Query: 9 GHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKF 68
GH+ V V +D + + S D +IK+ + Q LA L GH V +V +
Sbjct: 105 GHKSDVXSVDIDKKASXIISGSRDKTIKVWTI---KGQCLATLLGHNDWVSQVRVVPNEK 161
Query: 69 GS----ILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSS 124
+ S D V W N N++ + F H S++N++ +P G +A
Sbjct: 162 ADDDSVTIISAGNDKXVKAW---NLNQFQIEADFIGHNSNINTLTASPD--GTLIASAGK 216
Query: 125 DGNISVFT-ARADGGWDTSRIDQAHPVGVTSVSW--APSTAPGALVGSGFLDPV------ 175
DG I ++ A + S D+ + + + A +TA G V S LDP
Sbjct: 217 DGEIXLWNLAAKKAXYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFS--LDPQYLVDDL 274
Query: 176 ------------------------QKLCSGGCDNTVKVWKL 192
Q L +G DN ++VW++
Sbjct: 275 RPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 5/99 (5%)
Query: 72 LASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVF 131
+A C + V I+ E + N+W++ H ++H V IDWAP + + CG +D N V+
Sbjct: 23 IAICPNNHEVHIY-EKSGNKWVQVHELKEHNGQVTGIDWAPDSNRI-VTCG-TDRNAYVW 79
Query: 132 TARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSG 170
T + W + + V WAP+ A VGSG
Sbjct: 80 TLKGR-TWKPTLVILRINRAARCVRWAPNEKKFA-VGSG 116
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/169 (21%), Positives = 61/169 (36%), Gaps = 18/169 (10%)
Query: 25 RLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIW 84
++A +++ + I N + +L H G V + WA P I+ +C D +W
Sbjct: 22 QIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWA-PDSNRIV-TCGTDRNAYVW 79
Query: 85 KEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRI 144
W V + + WAP+E + GS +I F D W I
Sbjct: 80 TL-KGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND-WWVCKHI 137
Query: 145 DQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLY 193
+ V S+ W P++ L +G CD +++ Y
Sbjct: 138 KKPIRSTVLSLDWHPNSV--------------LLAAGSCDFKCRIFSAY 172
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 5/99 (5%)
Query: 72 LASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVF 131
+A C + V I+ E + N+W++ H ++H V +DWAP + + CG +D N V+
Sbjct: 23 IAICPNNHEVHIY-EKSGNKWVQVHELKEHNGQVTGVDWAPDSNRI-VTCG-TDRNAYVW 79
Query: 132 TARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSG 170
T + W + + V WAP+ A VGSG
Sbjct: 80 TLKGR-TWKPTLVILRINRAARCVRWAPNEKKFA-VGSG 116
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 61/169 (36%), Gaps = 18/169 (10%)
Query: 25 RLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIW 84
++A +++ + I N + +L H G V V WA P I+ +C D +W
Sbjct: 22 QIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWA-PDSNRIV-TCGTDRNAYVW 79
Query: 85 KEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRI 144
W V + + WAP+E + GS +I F D W I
Sbjct: 80 TL-KGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND-WWVCKHI 137
Query: 145 DQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLY 193
+ V S+ W P++ L +G CD +++ Y
Sbjct: 138 KKPIRSTVLSLDWHPNSV--------------LLAAGSCDFKCRIFSAY 172
Score = 27.3 bits (59), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 43/125 (34%), Gaps = 27/125 (21%)
Query: 146 QAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPAL 205
+ H VT V WAP + ++ + G D VW L WK P L
Sbjct: 49 KEHNGQVTGVDWAPDS--------------NRIVTCGTDRNAYVWTLKGRTWK----PTL 90
Query: 206 QMH--TDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYR 263
+ R V WAPN + A S + I +E D W V K P+
Sbjct: 91 VILRINRAARCVRWAPN----EKKFAVGSGSRVISICYFEQENDWW---VCKHIKKPIRS 143
Query: 264 VSWSL 268
SL
Sbjct: 144 TVLSL 148
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 82/182 (45%), Gaps = 18/182 (9%)
Query: 9 GHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKF 68
GH V V G+ LA++S+D IKI G + + +SGHK + +VAW+
Sbjct: 22 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSSD-- 77
Query: 69 GSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNI 128
++L S S D T+ IW + +S + +K + H + V ++ P + GS D ++
Sbjct: 78 SNLLVSASDDKTLKIW-DVSSGKCLK--TLKGHSNYVFCCNFNPQS--NLIVSGSFDESV 132
Query: 129 SVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKL---CSGGCDN 185
++ + T + + P VS G+L+ S D + ++ SG C
Sbjct: 133 RIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 186
Query: 186 TV 187
T+
Sbjct: 187 TL 188
Score = 35.0 bits (79), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 17/112 (15%)
Query: 178 LCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKV 237
L S D +K+W Y+G ++ + H + DVAW+ + L + SAS+D +
Sbjct: 39 LASSSADKLIKIWGAYDGKFE----KTISGHKLGISDVAWSSDSNL----LVSASDDKTL 90
Query: 238 IIWTVAREGDQWEGKVLHDFK---TPVYRVSWSLTGNILAVADGNNNVTLWE 286
IW V+ GK L K V+ +++ N++ + +V +W+
Sbjct: 91 KIWDVS------SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 136
Score = 35.0 bits (79), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 104/243 (42%), Gaps = 32/243 (13%)
Query: 4 QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAW 63
+K +GH+ + DVA L +AS D ++KI V ++ + L L GH V+ +
Sbjct: 59 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNYVFCCNF 116
Query: 64 AHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGS 123
+P+ +++ S SFD +V IW + + + +K H V+++ + + G + S
Sbjct: 117 -NPQ-SNLIVSGSFDESVRIW-DVKTGKCLK--TLPAHSDPVSAVHF--NRDGSLIVSSS 169
Query: 124 SDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGC 183
DG ++ A G + ID +P V+ V ++P+ G + + L
Sbjct: 170 YDGLCRIWDT-ASGQCLKTLIDDDNP-PVSFVKFSPN---GKYILAATL----------- 213
Query: 184 DNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKST-IASASEDGKVIIWTV 242
DNT+K+W G C H + N + I S SED V IW +
Sbjct: 214 DNTLKLWDYSKG----KCLKTYTGHKN--EKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 267
Query: 243 ARE 245
+
Sbjct: 268 QTK 270
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 82/182 (45%), Gaps = 18/182 (9%)
Query: 9 GHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKF 68
GH V V G+ LA++S+D IKI G + + +SGHK + +VAW+
Sbjct: 17 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSSD-- 72
Query: 69 GSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNI 128
++L S S D T+ IW + +S + +K + H + V ++ P + GS D ++
Sbjct: 73 SNLLVSASDDKTLKIW-DVSSGKCLK--TLKGHSNYVFCCNFNPQS--NLIVSGSFDESV 127
Query: 129 SVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKL---CSGGCDN 185
++ + T + + P VS G+L+ S D + ++ SG C
Sbjct: 128 RIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 181
Query: 186 TV 187
T+
Sbjct: 182 TL 183
Score = 34.7 bits (78), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 104/243 (42%), Gaps = 32/243 (13%)
Query: 4 QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAW 63
+K +GH+ + DVA L +AS D ++KI V ++ + L L GH V+ +
Sbjct: 54 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNYVFCCNF 111
Query: 64 AHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGS 123
+P+ +++ S SFD +V IW + + + +K H V+++ + + G + S
Sbjct: 112 -NPQ-SNLIVSGSFDESVRIW-DVKTGKCLK--TLPAHSDPVSAVHF--NRDGSLIVSSS 164
Query: 124 SDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGC 183
DG ++ A G + ID +P V+ V ++P+ G + + L
Sbjct: 165 YDGLCRIWDT-ASGQCLKTLIDDDNP-PVSFVKFSPN---GKYILAATL----------- 208
Query: 184 DNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKST-IASASEDGKVIIWTV 242
DNT+K+W G C H + N + I S SED V IW +
Sbjct: 209 DNTLKLWDYSKG----KCLKTYTGHKN--EKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 262
Query: 243 ARE 245
+
Sbjct: 263 QTK 265
Score = 34.7 bits (78), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 17/112 (15%)
Query: 178 LCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKV 237
L S D +K+W Y+G ++ + H + DVAW+ + L + SAS+D +
Sbjct: 34 LASSSADKLIKIWGAYDGKFE----KTISGHKLGISDVAWSSDSNL----LVSASDDKTL 85
Query: 238 IIWTVAREGDQWEGKVLHDFK---TPVYRVSWSLTGNILAVADGNNNVTLWE 286
IW V+ GK L K V+ +++ N++ + +V +W+
Sbjct: 86 KIWDVS------SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 131
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 82/182 (45%), Gaps = 18/182 (9%)
Query: 9 GHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKF 68
GH V V G+ LA++S+D IKI G + + +SGHK + +VAW+
Sbjct: 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSSD-- 76
Query: 69 GSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNI 128
++L S S D T+ IW + +S + +K + H + V ++ P + GS D ++
Sbjct: 77 SNLLVSASDDKTLKIW-DVSSGKCLK--TLKGHSNYVFCCNFNPQS--NLIVSGSFDESV 131
Query: 129 SVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKL---CSGGCDN 185
++ + T + + P VS G+L+ S D + ++ SG C
Sbjct: 132 RIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 185
Query: 186 TV 187
T+
Sbjct: 186 TL 187
Score = 35.0 bits (79), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 17/112 (15%)
Query: 178 LCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKV 237
L S D +K+W Y+G ++ + H + DVAW+ + L + SAS+D +
Sbjct: 38 LASSSADKLIKIWGAYDGKFE----KTISGHKLGISDVAWSSDSNL----LVSASDDKTL 89
Query: 238 IIWTVAREGDQWEGKVLHDFK---TPVYRVSWSLTGNILAVADGNNNVTLWE 286
IW V+ GK L K V+ +++ N++ + +V +W+
Sbjct: 90 KIWDVS------SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 135
Score = 34.7 bits (78), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 104/243 (42%), Gaps = 32/243 (13%)
Query: 4 QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAW 63
+K +GH+ + DVA L +AS D ++KI V ++ + L L GH V+ +
Sbjct: 58 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNYVFCCNF 115
Query: 64 AHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGS 123
+P+ +++ S SFD +V IW + + + +K H V+++ + + G + S
Sbjct: 116 -NPQ-SNLIVSGSFDESVRIW-DVKTGKCLK--TLPAHSDPVSAVHF--NRDGSLIVSSS 168
Query: 124 SDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGC 183
DG ++ A G + ID +P V+ V ++P+ G + + L
Sbjct: 169 YDGLCRIWDT-ASGQCLKTLIDDDNP-PVSFVKFSPN---GKYILAATL----------- 212
Query: 184 DNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKST-IASASEDGKVIIWTV 242
DNT+K+W G C H + N + I S SED V IW +
Sbjct: 213 DNTLKLWDYSKG----KCLKTYTGHKN--EKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 266
Query: 243 ARE 245
+
Sbjct: 267 QTK 269
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 82/182 (45%), Gaps = 18/182 (9%)
Query: 9 GHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKF 68
GH V V G+ LA++S+D IKI G + + +SGHK + +VAW+
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSSD-- 82
Query: 69 GSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNI 128
++L S S D T+ IW + +S + +K + H + V ++ P + GS D ++
Sbjct: 83 SNLLVSASDDKTLKIW-DVSSGKCLK--TLKGHSNYVFCCNFNPQS--NLIVSGSFDESV 137
Query: 129 SVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKL---CSGGCDN 185
++ + T + + P VS G+L+ S D + ++ SG C
Sbjct: 138 RIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 191
Query: 186 TV 187
T+
Sbjct: 192 TL 193
Score = 35.0 bits (79), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 104/243 (42%), Gaps = 32/243 (13%)
Query: 4 QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAW 63
+K +GH+ + DVA L +AS D ++KI V ++ + L L GH V+ +
Sbjct: 64 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNYVFCCNF 121
Query: 64 AHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGS 123
+P+ +++ S SFD +V IW + + + +K H V+++ + + G + S
Sbjct: 122 -NPQ-SNLIVSGSFDESVRIW-DVKTGKCLK--TLPAHSDPVSAVHF--NRDGSLIVSSS 174
Query: 124 SDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGC 183
DG ++ A G + ID +P V+ V ++P+ G + + L
Sbjct: 175 YDGLCRIWDT-ASGQCLKTLIDDDNP-PVSFVKFSPN---GKYILAATL----------- 218
Query: 184 DNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKST-IASASEDGKVIIWTV 242
DNT+K+W G C H + N + I S SED V IW +
Sbjct: 219 DNTLKLWDYSKG----KCLKTYTGHKN--EKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 272
Query: 243 ARE 245
+
Sbjct: 273 QTK 275
Score = 35.0 bits (79), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 17/112 (15%)
Query: 178 LCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKV 237
L S D +K+W Y+G ++ + H + DVAW+ + L + SAS+D +
Sbjct: 44 LASSSADKLIKIWGAYDGKFEK----TISGHKLGISDVAWSSDSNL----LVSASDDKTL 95
Query: 238 IIWTVAREGDQWEGKVLHDFK---TPVYRVSWSLTGNILAVADGNNNVTLWE 286
IW V+ GK L K V+ +++ N++ + +V +W+
Sbjct: 96 KIWDVS------SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 141
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 82/182 (45%), Gaps = 18/182 (9%)
Query: 9 GHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKF 68
GH V V G+ LA++S+D IKI G + + +SGHK + +VAW+
Sbjct: 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSSD-- 76
Query: 69 GSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNI 128
++L S S D T+ IW + +S + +K + H + V ++ P + GS D ++
Sbjct: 77 SNLLVSASDDKTLKIW-DVSSGKCLK--TLKGHSNYVFCCNFNPQS--NLIVSGSFDESV 131
Query: 129 SVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKL---CSGGCDN 185
++ + T + + P VS G+L+ S D + ++ SG C
Sbjct: 132 RIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 185
Query: 186 TV 187
T+
Sbjct: 186 TL 187
Score = 34.7 bits (78), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 17/112 (15%)
Query: 178 LCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKV 237
L S D +K+W Y+G ++ + H + DVAW+ + L + SAS+D +
Sbjct: 38 LASSSADKLIKIWGAYDGKFE----KTISGHKLGISDVAWSSDSNL----LVSASDDKTL 89
Query: 238 IIWTVAREGDQWEGKVLHDFK---TPVYRVSWSLTGNILAVADGNNNVTLWE 286
IW V+ GK L K V+ +++ N++ + +V +W+
Sbjct: 90 KIWDVS------SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 135
Score = 34.7 bits (78), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 104/243 (42%), Gaps = 32/243 (13%)
Query: 4 QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAW 63
+K +GH+ + DVA L +AS D ++KI V ++ + L L GH V+ +
Sbjct: 58 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNYVFCCNF 115
Query: 64 AHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGS 123
+P+ +++ S SFD +V IW + + + +K H V+++ + + G + S
Sbjct: 116 -NPQ-SNLIVSGSFDESVRIW-DVKTGKCLK--TLPAHSDPVSAVHF--NRDGSLIVSSS 168
Query: 124 SDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGC 183
DG ++ A G + ID +P V+ V ++P+ G + + L
Sbjct: 169 YDGLCRIWDT-ASGQCLKTLIDDDNP-PVSFVKFSPN---GKYILAATL----------- 212
Query: 184 DNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKST-IASASEDGKVIIWTV 242
DNT+K+W G C H + N + I S SED V IW +
Sbjct: 213 DNTLKLWDYSKG----KCLKTYTGHKN--EKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 266
Query: 243 ARE 245
+
Sbjct: 267 QTK 269
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 82/182 (45%), Gaps = 18/182 (9%)
Query: 9 GHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKF 68
GH V V G+ LA++S+D IKI G + + +SGHK + +VAW+
Sbjct: 38 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSSD-- 93
Query: 69 GSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNI 128
++L S S D T+ IW + +S + +K + H + V ++ P + GS D ++
Sbjct: 94 SNLLVSASDDKTLKIW-DVSSGKCLK--TLKGHSNYVFCCNFNPQS--NLIVSGSFDESV 148
Query: 129 SVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKL---CSGGCDN 185
++ + T + + P VS G+L+ S D + ++ SG C
Sbjct: 149 RIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 202
Query: 186 TV 187
T+
Sbjct: 203 TL 204
Score = 35.0 bits (79), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 17/112 (15%)
Query: 178 LCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKV 237
L S D +K+W Y+G ++ + H + DVAW+ + L + SAS+D +
Sbjct: 55 LASSSADKLIKIWGAYDGKFE----KTISGHKLGISDVAWSSDSNL----LVSASDDKTL 106
Query: 238 IIWTVAREGDQWEGKVLHDFK---TPVYRVSWSLTGNILAVADGNNNVTLWE 286
IW V+ GK L K V+ +++ N++ + +V +W+
Sbjct: 107 KIWDVS------SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 152
Score = 34.7 bits (78), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 104/243 (42%), Gaps = 32/243 (13%)
Query: 4 QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAW 63
+K +GH+ + DVA L +AS D ++KI V ++ + L L GH V+ +
Sbjct: 75 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNYVFCCNF 132
Query: 64 AHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGS 123
+P+ +++ S SFD +V IW + + + +K H V+++ + + G + S
Sbjct: 133 -NPQ-SNLIVSGSFDESVRIW-DVKTGKCLK--TLPAHSDPVSAVHF--NRDGSLIVSSS 185
Query: 124 SDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGC 183
DG ++ A G + ID +P V+ V ++P+ G + + L
Sbjct: 186 YDGLCRIWDT-ASGQCLKTLIDDDNP-PVSFVKFSPN---GKYILAATL----------- 229
Query: 184 DNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKST-IASASEDGKVIIWTV 242
DNT+K+W G C H + N + I S SED V IW +
Sbjct: 230 DNTLKLWDYSKG----KCLKTYTGHKN--EKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 283
Query: 243 ARE 245
+
Sbjct: 284 QTK 286
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 82/182 (45%), Gaps = 18/182 (9%)
Query: 9 GHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKF 68
GH V V G+ LA++S+D IKI G + + +SGHK + +VAW+
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSSD-- 82
Query: 69 GSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNI 128
++L S S D T+ IW + +S + +K + H + V ++ P + GS D ++
Sbjct: 83 SNLLVSASDDKTLKIW-DVSSGKCLK--TLKGHSNYVFCCNFNPQS--NLIVSGSFDESV 137
Query: 129 SVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKL---CSGGCDN 185
++ + T + + P VS G+L+ S D + ++ SG C
Sbjct: 138 RIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 191
Query: 186 TV 187
T+
Sbjct: 192 TL 193
Score = 35.0 bits (79), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 17/112 (15%)
Query: 178 LCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKV 237
L S D +K+W Y+G ++ + H + DVAW+ + L + SAS+D +
Sbjct: 44 LASSSADKLIKIWGAYDGKFE----KTISGHKLGISDVAWSSDSNL----LVSASDDKTL 95
Query: 238 IIWTVAREGDQWEGKVLHDFK---TPVYRVSWSLTGNILAVADGNNNVTLWE 286
IW V+ GK L K V+ +++ N++ + +V +W+
Sbjct: 96 KIWDVS------SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 141
Score = 34.7 bits (78), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 104/243 (42%), Gaps = 32/243 (13%)
Query: 4 QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAW 63
+K +GH+ + DVA L +AS D ++KI V ++ + L L GH V+ +
Sbjct: 64 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNYVFCCNF 121
Query: 64 AHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGS 123
+P+ +++ S SFD +V IW + + + +K H V+++ + + G + S
Sbjct: 122 -NPQ-SNLIVSGSFDESVRIW-DVKTGKCLK--TLPAHSDPVSAVHF--NRDGSLIVSSS 174
Query: 124 SDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGC 183
DG ++ A G + ID +P V+ V ++P+ G + + L
Sbjct: 175 YDGLCRIWDT-ASGQCLKTLIDDDNP-PVSFVKFSPN---GKYILAATL----------- 218
Query: 184 DNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKST-IASASEDGKVIIWTV 242
DNT+K+W G C H + N + I S SED V IW +
Sbjct: 219 DNTLKLWDYSKG----KCLKTYTGHKN--EKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 272
Query: 243 ARE 245
+
Sbjct: 273 QTK 275
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 40/183 (21%), Positives = 73/183 (39%), Gaps = 24/183 (13%)
Query: 14 VHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILA 73
+ D++ D+ G+RL + + ++ L ++SGH + H K +
Sbjct: 119 ISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHS---QRINACHLKQSRPMR 175
Query: 74 SCSF--DGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVF 131
S + DG+V+ ++ D S V ++++P + G SD IS F
Sbjct: 176 SMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVG-SDRKISCF 234
Query: 132 TARADGGWDTSRIDQAHPV--GVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKV 189
++ G + D PV G+ ++SW S QK + G D T++V
Sbjct: 235 DGKS-GEFLKYIEDDQEPVQGGIFALSWLDS---------------QKFATVGADATIRV 278
Query: 190 WKL 192
W +
Sbjct: 279 WDV 281
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 9/120 (7%)
Query: 173 DPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMH-TDWVRDVAWAPNLGLPKSTIASA 231
DP + C + V L +G K+ H + V V ++P G + S
Sbjct: 27 DPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKG--SQYLCSG 84
Query: 232 SEDGKVII--WTVAREGDQWEGKVLHDFKT---PVYRVSWSLTGNIL-AVADGNNNVTLW 285
E GKVI+ WT +E + E V +F+ P+ +SW G L V +G +N ++
Sbjct: 85 DESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVF 144
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 13/76 (17%)
Query: 103 SSVNSIDWAPHELGL--------CLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTS 154
S +N+I W P E G +A GS D NI +++ + + AH GV +
Sbjct: 532 SKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP--MKIIKALNAHKDGVNN 589
Query: 155 VSWAPSTAPGALVGSG 170
+ W P LV SG
Sbjct: 590 LLWE---TPSTLVSSG 602
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 82/182 (45%), Gaps = 18/182 (9%)
Query: 9 GHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKF 68
GH V V G+ LA++S+D IKI G + + +SGHK + +VAW+
Sbjct: 26 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSSD-- 81
Query: 69 GSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNI 128
++L S S D T+ IW + +S + +K + H + V ++ P + GS D ++
Sbjct: 82 SNLLVSASDDKTLKIW-DVSSGKCLK--TLKGHSNYVFCCNFNPQS--NLIVSGSFDESV 136
Query: 129 SVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKL---CSGGCDN 185
++ + T + + P VS G+L+ S D + ++ SG C
Sbjct: 137 RIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 190
Query: 186 TV 187
T+
Sbjct: 191 TL 192
Score = 35.0 bits (79), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 17/112 (15%)
Query: 178 LCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKV 237
L S D +K+W Y+G ++ + H + DVAW+ + L + SAS+D +
Sbjct: 43 LASSSADKLIKIWGAYDGKFE----KTISGHKLGISDVAWSSDSNL----LVSASDDKTL 94
Query: 238 IIWTVAREGDQWEGKVLHDFK---TPVYRVSWSLTGNILAVADGNNNVTLWE 286
IW V+ GK L K V+ +++ N++ + +V +W+
Sbjct: 95 KIWDVS------SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 140
Score = 34.7 bits (78), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 104/243 (42%), Gaps = 32/243 (13%)
Query: 4 QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAW 63
+K +GH+ + DVA L +AS D ++KI V ++ + L L GH V+ +
Sbjct: 63 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNYVFCCNF 120
Query: 64 AHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGS 123
+P+ +++ S SFD +V IW + + + +K H V+++ + + G + S
Sbjct: 121 -NPQ-SNLIVSGSFDESVRIW-DVKTGKCLK--TLPAHSDPVSAVHF--NRDGSLIVSSS 173
Query: 124 SDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGC 183
DG ++ A G + ID +P V+ V ++P+ G + + L
Sbjct: 174 YDGLCRIWDT-ASGQCLKTLIDDDNP-PVSFVKFSPN---GKYILAATL----------- 217
Query: 184 DNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKST-IASASEDGKVIIWTV 242
DNT+K+W G C H + N + I S SED V IW +
Sbjct: 218 DNTLKLWDYSKG----KCLKTYTGHKN--EKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 271
Query: 243 ARE 245
+
Sbjct: 272 QTK 274
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 82/182 (45%), Gaps = 18/182 (9%)
Query: 9 GHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKF 68
GH V V G+ LA++S+D IKI G + + +SGHK + +VAW+
Sbjct: 20 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSSD-- 75
Query: 69 GSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNI 128
++L S S D T+ IW + +S + +K + H + V ++ P + GS D ++
Sbjct: 76 SNLLVSASDDKTLKIW-DVSSGKCLK--TLKGHSNYVFCCNFNPQS--NLIVSGSFDESV 130
Query: 129 SVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKL---CSGGCDN 185
++ + T + + P VS G+L+ S D + ++ SG C
Sbjct: 131 RIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 184
Query: 186 TV 187
T+
Sbjct: 185 TL 186
Score = 34.7 bits (78), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 17/112 (15%)
Query: 178 LCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKV 237
L S D +K+W Y+G ++ + H + DVAW+ + L + SAS+D +
Sbjct: 37 LASSSADKLIKIWGAYDGKFE----KTISGHKLGISDVAWSSDSNL----LVSASDDKTL 88
Query: 238 IIWTVAREGDQWEGKVLHDFK---TPVYRVSWSLTGNILAVADGNNNVTLWE 286
IW V+ GK L K V+ +++ N++ + +V +W+
Sbjct: 89 KIWDVS------SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 134
Score = 34.7 bits (78), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 104/243 (42%), Gaps = 32/243 (13%)
Query: 4 QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAW 63
+K +GH+ + DVA L +AS D ++KI V ++ + L L GH V+ +
Sbjct: 57 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNYVFCCNF 114
Query: 64 AHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGS 123
+P+ +++ S SFD +V IW + + + +K H V+++ + + G + S
Sbjct: 115 -NPQ-SNLIVSGSFDESVRIW-DVKTGKCLK--TLPAHSDPVSAVHF--NRDGSLIVSSS 167
Query: 124 SDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGC 183
DG ++ A G + ID +P V+ V ++P+ G + + L
Sbjct: 168 YDGLCRIWDT-ASGQCLKTLIDDDNP-PVSFVKFSPN---GKYILAATL----------- 211
Query: 184 DNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKST-IASASEDGKVIIWTV 242
DNT+K+W G C H + N + I S SED V IW +
Sbjct: 212 DNTLKLWDYSKG----KCLKTYTGHKN--EKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 265
Query: 243 ARE 245
+
Sbjct: 266 QTK 268
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 82/182 (45%), Gaps = 18/182 (9%)
Query: 9 GHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKF 68
GH V V G+ LA++S+D IKI G + + +SGHK + +VAW+
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSSD-- 82
Query: 69 GSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNI 128
++L S S D T+ IW + +S + +K + H + V ++ P + GS D ++
Sbjct: 83 SNLLVSASDDKTLKIW-DVSSGKCLK--TLKGHSNYVFCCNFNPQS--NLIVSGSFDESV 137
Query: 129 SVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKL---CSGGCDN 185
++ + T + + P VS G+L+ S D + ++ SG C
Sbjct: 138 RIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 191
Query: 186 TV 187
T+
Sbjct: 192 TL 193
Score = 35.0 bits (79), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 17/112 (15%)
Query: 178 LCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKV 237
L S D +K+W Y+G ++ + H + DVAW+ + L + SAS+D +
Sbjct: 44 LASSSADKLIKIWGAYDGKFE----KTISGHKLGISDVAWSSDSNL----LVSASDDKTL 95
Query: 238 IIWTVAREGDQWEGKVLHDFK---TPVYRVSWSLTGNILAVADGNNNVTLWE 286
IW V+ GK L K V+ +++ N++ + +V +W+
Sbjct: 96 KIWDVS------SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 141
Score = 34.7 bits (78), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 104/243 (42%), Gaps = 32/243 (13%)
Query: 4 QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAW 63
+K +GH+ + DVA L +AS D ++KI V ++ + L L GH V+ +
Sbjct: 64 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNYVFCCNF 121
Query: 64 AHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGS 123
+P+ +++ S SFD +V IW + + + +K H V+++ + + G + S
Sbjct: 122 -NPQ-SNLIVSGSFDESVRIW-DVKTGKCLK--TLPAHSDPVSAVHF--NRDGSLIVSSS 174
Query: 124 SDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGC 183
DG ++ A G + ID +P V+ V ++P+ G + + L
Sbjct: 175 YDGLCRIWDT-ASGQCLKTLIDDDNP-PVSFVKFSPN---GKYILAATL----------- 218
Query: 184 DNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKST-IASASEDGKVIIWTV 242
DNT+K+W G C H + N + I S SED V IW +
Sbjct: 219 DNTLKLWDYSKG----KCLKTYTGHKN--EKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 272
Query: 243 ARE 245
+
Sbjct: 273 QTK 275
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 82/182 (45%), Gaps = 18/182 (9%)
Query: 9 GHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKF 68
GH V V G+ LA++S+D IKI G + + +SGHK + +VAW+
Sbjct: 43 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT--ISGHKLGISDVAWSSD-- 98
Query: 69 GSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNI 128
++L S S D T+ IW + +S + +K + H + V ++ P + GS D ++
Sbjct: 99 SNLLVSASDDKTLKIW-DVSSGKCLK--TLKGHSNYVFCCNFNPQ--SNLIVSGSFDESV 153
Query: 129 SVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKL---CSGGCDN 185
++ + T + + P VS G+L+ S D + ++ SG C
Sbjct: 154 RIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 207
Query: 186 TV 187
T+
Sbjct: 208 TL 209
Score = 35.0 bits (79), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 17/112 (15%)
Query: 178 LCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKV 237
L S D +K+W Y+G ++ + H + DVAW+ + L + SAS+D +
Sbjct: 60 LASSSADKLIKIWGAYDGKFEK----TISGHKLGISDVAWSSDSNL----LVSASDDKTL 111
Query: 238 IIWTVAREGDQWEGKVLHDFK---TPVYRVSWSLTGNILAVADGNNNVTLWE 286
IW V+ GK L K V+ +++ N++ + +V +W+
Sbjct: 112 KIWDVS------SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 157
Score = 34.7 bits (78), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 103/240 (42%), Gaps = 32/240 (13%)
Query: 4 QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAW 63
+K +GH+ + DVA L +AS D ++KI V ++ + L L GH V+ +
Sbjct: 80 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNYVFCCNF 137
Query: 64 AHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGS 123
+P+ +++ S SFD +V IW + + + +K H V+++ + + G + S
Sbjct: 138 -NPQ-SNLIVSGSFDESVRIW-DVKTGKCLK--TLPAHSDPVSAVHF--NRDGSLIVSSS 190
Query: 124 SDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGC 183
DG ++ A G + ID +P V+ V ++P+ G + + L
Sbjct: 191 YDGLCRIWDT-ASGQCLKTLIDDDNP-PVSFVKFSPN---GKYILAATL----------- 234
Query: 184 DNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKST-IASASEDGKVIIWTV 242
DNT+K+W G C H + N + I S SED V IW +
Sbjct: 235 DNTLKLWDYSKG----KCLKTYTGHKN--EKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 288
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 82/182 (45%), Gaps = 18/182 (9%)
Query: 9 GHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKF 68
GH V V G+ LA++S+D IKI G + + +SGHK + +VAW+
Sbjct: 45 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT--ISGHKLGISDVAWSSD-- 100
Query: 69 GSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNI 128
++L S S D T+ IW + +S + +K + H + V ++ P + GS D ++
Sbjct: 101 SNLLVSASDDKTLKIW-DVSSGKCLK--TLKGHSNYVFCCNFNPQ--SNLIVSGSFDESV 155
Query: 129 SVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKL---CSGGCDN 185
++ + T + + P VS G+L+ S D + ++ SG C
Sbjct: 156 RIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 209
Query: 186 TV 187
T+
Sbjct: 210 TL 211
Score = 35.0 bits (79), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 17/112 (15%)
Query: 178 LCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKV 237
L S D +K+W Y+G ++ + H + DVAW+ + L + SAS+D +
Sbjct: 62 LASSSADKLIKIWGAYDGKFEK----TISGHKLGISDVAWSSDSNL----LVSASDDKTL 113
Query: 238 IIWTVAREGDQWEGKVLHDFK---TPVYRVSWSLTGNILAVADGNNNVTLWE 286
IW V+ GK L K V+ +++ N++ + +V +W+
Sbjct: 114 KIWDVS------SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 159
Score = 34.7 bits (78), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 103/240 (42%), Gaps = 32/240 (13%)
Query: 4 QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAW 63
+K +GH+ + DVA L +AS D ++KI V ++ + L L GH V+ +
Sbjct: 82 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNYVFCCNF 139
Query: 64 AHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGS 123
+P+ +++ S SFD +V IW + + + +K H V+++ + + G + S
Sbjct: 140 -NPQ-SNLIVSGSFDESVRIW-DVKTGKCLK--TLPAHSDPVSAVHF--NRDGSLIVSSS 192
Query: 124 SDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGC 183
DG ++ A G + ID +P V+ V ++P+ G + + L
Sbjct: 193 YDGLCRIWDT-ASGQCLKTLIDDDNP-PVSFVKFSPN---GKYILAATL----------- 236
Query: 184 DNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKST-IASASEDGKVIIWTV 242
DNT+K+W G C H + N + I S SED V IW +
Sbjct: 237 DNTLKLWDYSKG----KCLKTYTGHKN--EKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 290
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 82/182 (45%), Gaps = 18/182 (9%)
Query: 9 GHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKF 68
GH V V G+ LA++S+D IKI G + + +SGHK + +VAW+
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSSD-- 79
Query: 69 GSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNI 128
++L S S D T+ IW + +S + +K + H + V ++ P + GS D ++
Sbjct: 80 SNLLVSASDDKTLKIW-DVSSGKCLK--TLKGHSNYVFCCNFNPQS--NLIVSGSFDESV 134
Query: 129 SVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKL---CSGGCDN 185
++ + T + + P VS G+L+ S D + ++ SG C
Sbjct: 135 RIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 188
Query: 186 TV 187
T+
Sbjct: 189 TL 190
Score = 35.0 bits (79), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 17/112 (15%)
Query: 178 LCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKV 237
L S D +K+W Y+G ++ + H + DVAW+ + L + SAS+D +
Sbjct: 41 LASSSADKLIKIWGAYDGKFE----KTISGHKLGISDVAWSSDSNL----LVSASDDKTL 92
Query: 238 IIWTVAREGDQWEGKVLHDFK---TPVYRVSWSLTGNILAVADGNNNVTLWE 286
IW V+ GK L K V+ +++ N++ + +V +W+
Sbjct: 93 KIWDVS------SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Score = 34.3 bits (77), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 104/243 (42%), Gaps = 32/243 (13%)
Query: 4 QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAW 63
+K +GH+ + DVA L +AS D ++KI V ++ + L L GH V+ +
Sbjct: 61 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNYVFCCNF 118
Query: 64 AHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGS 123
+P+ +++ S SFD +V IW + + + +K H V+++ + + G + S
Sbjct: 119 -NPQ-SNLIVSGSFDESVRIW-DVKTGKCLK--TLPAHSDPVSAVHF--NRDGSLIVSSS 171
Query: 124 SDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGC 183
DG ++ A G + ID +P V+ V ++P+ G + + L
Sbjct: 172 YDGLCRIWDT-ASGQCLKTLIDDDNP-PVSFVKFSPN---GKYILAATL----------- 215
Query: 184 DNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKST-IASASEDGKVIIWTV 242
DNT+K+W G C H + N + I S SED V IW +
Sbjct: 216 DNTLKLWDYSKG----KCLKTYTGHKN--EKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 269
Query: 243 ARE 245
+
Sbjct: 270 QTK 272
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Query: 205 LQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRV 264
L HT V V ++PN +AS+S D + IW A +G ++E K + K + V
Sbjct: 22 LAGHTKAVSSVKFSPN----GEWLASSSADKLIKIWG-AYDG-KFE-KTISGHKLGISDV 74
Query: 265 SWSLTGNILAVADGNNNVTLWE 286
+WS N+L A + + +W+
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWD 96
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 82/182 (45%), Gaps = 18/182 (9%)
Query: 9 GHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKF 68
GH V V G+ LA++S+D IKI G + + +SGHK + +VAW+
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSSD-- 79
Query: 69 GSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNI 128
++L S S D T+ IW + +S + +K + H + V ++ P + GS D ++
Sbjct: 80 SNLLVSASDDKTLKIW-DVSSGKCLK--TLKGHSNYVFCCNFNPQS--NLIVSGSFDESV 134
Query: 129 SVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKL---CSGGCDN 185
++ + T + + P VS G+L+ S D + ++ SG C
Sbjct: 135 RIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 188
Query: 186 TV 187
T+
Sbjct: 189 TL 190
Score = 35.0 bits (79), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 17/112 (15%)
Query: 178 LCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKV 237
L S D +K+W Y+G ++ + H + DVAW+ + L + SAS+D +
Sbjct: 41 LASSSADKLIKIWGAYDGKFE----KTISGHKLGISDVAWSSDSNL----LVSASDDKTL 92
Query: 238 IIWTVAREGDQWEGKVLHDFK---TPVYRVSWSLTGNILAVADGNNNVTLWE 286
IW V+ GK L K V+ +++ N++ + +V +W+
Sbjct: 93 KIWDVS------SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Score = 34.3 bits (77), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 104/243 (42%), Gaps = 32/243 (13%)
Query: 4 QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAW 63
+K +GH+ + DVA L +AS D ++KI V ++ + L L GH V+ +
Sbjct: 61 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNYVFCCNF 118
Query: 64 AHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGS 123
+P+ +++ S SFD +V IW + + + +K H V+++ + + G + S
Sbjct: 119 -NPQ-SNLIVSGSFDESVRIW-DVKTGKCLK--TLPAHSDPVSAVHF--NRDGSLIVSSS 171
Query: 124 SDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGC 183
DG ++ A G + ID +P V+ V ++P+ G + + L
Sbjct: 172 YDGLCRIWDT-ASGQCLKTLIDDDNP-PVSFVKFSPN---GKYILAATL----------- 215
Query: 184 DNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKST-IASASEDGKVIIWTV 242
DNT+K+W G C H + N + I S SED V IW +
Sbjct: 216 DNTLKLWDYSKG----KCLKTYTGHKN--EKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 269
Query: 243 ARE 245
+
Sbjct: 270 QTK 272
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Query: 205 LQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRV 264
L HT V V ++PN +AS+S D + IW A +G ++E K + K + V
Sbjct: 22 LAGHTKAVSSVKFSPN----GEWLASSSADKLIKIWG-AYDG-KFE-KTISGHKLGISDV 74
Query: 265 SWSLTGNILAVADGNNNVTLWE 286
+WS N+L A + + +W+
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWD 96
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 81/182 (44%), Gaps = 18/182 (9%)
Query: 9 GHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKF 68
GH V V G+ LA +S+D IKI G + + +SGHK + +VAW+
Sbjct: 24 GHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSSD-- 79
Query: 69 GSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNI 128
++L S S D T+ IW + +S + +K + H + V ++ P + GS D ++
Sbjct: 80 SNLLVSASDDKTLKIW-DVSSGKCLK--TLKGHSNYVFCCNFNPQS--NLIVSGSFDESV 134
Query: 129 SVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKL---CSGGCDN 185
++ + T + + P VS G+L+ S D + ++ SG C
Sbjct: 135 RIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 188
Query: 186 TV 187
T+
Sbjct: 189 TL 190
Score = 34.7 bits (78), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 104/243 (42%), Gaps = 32/243 (13%)
Query: 4 QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAW 63
+K +GH+ + DVA L +AS D ++KI V ++ + L L GH V+ +
Sbjct: 61 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNYVFCCNF 118
Query: 64 AHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGS 123
+P+ +++ S SFD +V IW + + + +K H V+++ + + G + S
Sbjct: 119 -NPQ-SNLIVSGSFDESVRIW-DVKTGKCLK--TLPAHSDPVSAVHF--NRDGSLIVSSS 171
Query: 124 SDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGC 183
DG ++ A G + ID +P V+ V ++P+ G + + L
Sbjct: 172 YDGLCRIWDT-ASGQCLKTLIDDDNP-PVSFVKFSPN---GKYILAATL----------- 215
Query: 184 DNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKST-IASASEDGKVIIWTV 242
DNT+K+W G C H + N + I S SED V IW +
Sbjct: 216 DNTLKLWDYSKG----KCLKTYTGHKN--EKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 269
Query: 243 ARE 245
+
Sbjct: 270 QTK 272
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 51/112 (45%), Gaps = 17/112 (15%)
Query: 178 LCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKV 237
L + D +K+W Y+G ++ + H + DVAW+ + L + SAS+D +
Sbjct: 41 LAASSADKLIKIWGAYDGKFE----KTISGHKLGISDVAWSSDSNL----LVSASDDKTL 92
Query: 238 IIWTVAREGDQWEGKVLHDFK---TPVYRVSWSLTGNILAVADGNNNVTLWE 286
IW V+ GK L K V+ +++ N++ + +V +W+
Sbjct: 93 KIWDVS------SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 9 GHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKF 68
GH V V G+ LA++S+D IKI G + + +SGHK + +VAW+
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSSD-- 79
Query: 69 GSILASCSFDGTVIIW 84
++L S S D T+ IW
Sbjct: 80 SNLLVSASDDKTLKIW 95
Score = 35.0 bits (79), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 17/112 (15%)
Query: 178 LCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKV 237
L S D +K+W Y+G ++ + H + DVAW+ + L + SAS+D +
Sbjct: 41 LASSSADKLIKIWGAYDGKFE----KTISGHKLGISDVAWSSDSNL----LVSASDDKTL 92
Query: 238 IIWTVAREGDQWEGKVLHDFK---TPVYRVSWSLTGNILAVADGNNNVTLWE 286
IW V+ GK L K V+ +++ N++ + +V +W+
Sbjct: 93 KIWDVS------SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 4 QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAW 63
+K +GH+ + DVA L +AS D ++KI V ++ + L L GH V+ +
Sbjct: 61 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNYVFCCNF 118
Query: 64 AHPKFGSILASCSFDGTVIIW 84
+P+ +++ S SFD +V IW
Sbjct: 119 -NPQ-SNLIVSGSFDESVRIW 137
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 9 GHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKF 68
GH V V G+ LA++S+D IKI G + + +SGHK + +VAW+
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSSD-- 79
Query: 69 GSILASCSFDGTVIIW 84
++L S S D T+ IW
Sbjct: 80 SNLLVSASDDKTLKIW 95
Score = 35.0 bits (79), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 17/112 (15%)
Query: 178 LCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKV 237
L S D +K+W Y+G ++ + H + DVAW+ + L + SAS+D +
Sbjct: 41 LASSSADKLIKIWGAYDGKFE----KTISGHKLGISDVAWSSDSNL----LVSASDDKTL 92
Query: 238 IIWTVAREGDQWEGKVLHDFK---TPVYRVSWSLTGNILAVADGNNNVTLWE 286
IW V+ GK L K V+ +++ N++ + +V +W+
Sbjct: 93 KIWDVS------SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 103/243 (42%), Gaps = 32/243 (13%)
Query: 4 QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAW 63
+K +GH+ + DVA L +AS D ++KI V ++ + L L GH V+ +
Sbjct: 61 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNYVFCCNF 118
Query: 64 AHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGS 123
+P+ +++ S SFD +V IW + + +K H V+++ + + G + S
Sbjct: 119 -NPQ-SNLIVSGSFDESVRIW-DVKTGMCLK--TLPAHSDPVSAVHF--NRDGSLIVSSS 171
Query: 124 SDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGC 183
DG ++ A G + ID +P V+ V ++P+ G + + L
Sbjct: 172 YDGLCRIWDT-ASGQCLKTLIDDDNP-PVSFVKFSPN---GKYILAATL----------- 215
Query: 184 DNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKST-IASASEDGKVIIWTV 242
DNT+K+W G C H + N + I S SED V IW +
Sbjct: 216 DNTLKLWDYSKG----KCLKTYTGHKN--EKYCIFANFSVTGGKWIVSGSEDNMVYIWNL 269
Query: 243 ARE 245
+
Sbjct: 270 QTK 272
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 35.4 bits (80), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 73/192 (38%), Gaps = 45/192 (23%)
Query: 105 VNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSR-----IDQAHPVGVTSVSWAP 159
+ S+ ++P G LA G+ D I + WD I Q H + S+ + P
Sbjct: 126 IRSVCFSPD--GKFLATGAEDRLIRI--------WDIENRKIVMILQGHEQDIYSLDYFP 175
Query: 160 STAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAP 219
S KL SG D TV++W L G C L + D V VA +P
Sbjct: 176 SG--------------DKLVSGSGDRTVRIWDLRTG----QCSLTLSIE-DGVTTVAVSP 216
Query: 220 NLGLPKSTIASASEDGKVIIW------TVAREGDQWEGKVLHDFKTPVYRVSWSLTGNIL 273
G IA+ S D V +W V R + E H K VY V ++ G +
Sbjct: 217 GDG---KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGH--KDSVYSVVFTRDGQSV 271
Query: 274 AVADGNNNVTLW 285
+ +V LW
Sbjct: 272 VSGSLDRSVKLW 283
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 15/111 (13%)
Query: 8 TGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLS----------GHKGA 57
TGH+D+V+ V G+ + + S D S+K+ + N ++ +K GHK
Sbjct: 253 TGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDF 312
Query: 58 VWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSI 108
V VA + S S D V+ W + + N + + + H++SV S+
Sbjct: 313 VLSVATTQND--EYILSGSKDRGVLFWDKKSGNPLL---MLQGHRNSVISV 358
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 35.4 bits (80), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 51/112 (45%), Gaps = 12/112 (10%)
Query: 178 LCSGGCDNTVKVWKLY----NGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASE 233
L SG D TV +WKLY NG + + AL H +V D+A L S+S
Sbjct: 42 LISGSRDKTVMIWKLYEEEQNGYFGIP-HKALTGHNHFVSDLA----LSQENCFAISSSW 96
Query: 234 DGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLW 285
D + +W + R G ++ V H ++ VY V++S + A + LW
Sbjct: 97 DKTLRLWDL-RTGTTYKRFVGH--QSEVYSVAFSPDNRQILSAGAEREIKLW 145
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 46/233 (19%), Positives = 89/233 (38%), Gaps = 47/233 (20%)
Query: 3 PQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVA 62
P K TGH V D+A+ ++S D ++++ + T+ + GH+ V+ VA
Sbjct: 68 PHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTT--YKRFVGHQSEVYSVA 125
Query: 63 WA-------------HPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSID 109
++ K +IL C F ++ N ++W+ + S N +
Sbjct: 126 FSPDNRQILSAGAEREIKLWNILGECKFSSA----EKENHSDWVSCVRYSPIMKSANKVQ 181
Query: 110 -WAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVG 168
+AP+ A DG + V+ + + +AH V +S +P+
Sbjct: 182 PFAPY-----FASVGWDGRLKVW----NTNFQIRYTFKAHESNVNHLSISPNG------- 225
Query: 169 SGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNL 221
+ + +GG D + +W + N + F A + +A+ P L
Sbjct: 226 -------KYIATGGKDKKLLIWDILNLTYPQREFDAGST----INQIAFNPKL 267
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 35.0 bits (79), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 38/183 (20%), Positives = 72/183 (39%), Gaps = 24/183 (13%)
Query: 14 VHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAV--WEVAWAHPKFGSI 71
+ D++ D+ G+RL + + ++ L ++SGH + + + P
Sbjct: 119 ISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPXRSXT 178
Query: 72 LASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVF 131
+ DG+V+ ++ D S V ++++P + G SD IS F
Sbjct: 179 VGD---DGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVG-SDRKISCF 234
Query: 132 TARADGGWDTSRIDQAHPV--GVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKV 189
++ G + D PV G+ ++SW S QK + G D T++V
Sbjct: 235 DGKS-GEFLKYIEDDQEPVQGGIFALSWLDS---------------QKFATVGADATIRV 278
Query: 190 WKL 192
W +
Sbjct: 279 WDV 281
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 9/120 (7%)
Query: 173 DPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMH-TDWVRDVAWAPNLGLPKSTIASA 231
DP + C + V L +G K+ H + V V ++P G + S
Sbjct: 27 DPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKG--SQYLCSG 84
Query: 232 SEDGKVII--WTVAREGDQWEGKVLHDFKT---PVYRVSWSLTGNIL-AVADGNNNVTLW 285
E GKVI+ WT +E + E V +F+ P+ +SW G L V +G +N ++
Sbjct: 85 DESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVF 144
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 13/76 (17%)
Query: 103 SSVNSIDWAPHELGL--------CLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTS 154
S +N+I W P E G +A GS D NI +++ + + AH GV +
Sbjct: 532 SKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPX--KIIKALNAHKDGVNN 589
Query: 155 VSWAPSTAPGALVGSG 170
+ W P LV SG
Sbjct: 590 LLWE---TPSTLVSSG 602
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 34.3 bits (77), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 102/241 (42%), Gaps = 45/241 (18%)
Query: 54 HKGAVWEVAWAHPKF--GSILASCSFDGTVIIWK---EGNSNEWIKDHVFEDHKSSVNSI 108
H A+W VAW K + + S D V +WK E +W E H+ V S+
Sbjct: 31 HDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQW----SLEGHQLGVVSV 86
Query: 109 DWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVG 168
D H L + A S D +I ++ + G ID A PV +++++P +
Sbjct: 87 D-ISHTLPIA-ASSSLDAHIRLWD--LENGKQIKSID-AGPVDAWTLAFSPDS------- 134
Query: 169 SGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTI 228
Q L +G V ++ + +G + +L ++ +A++P+ +
Sbjct: 135 -------QYLATGTHVGKVNIFGVESGKKEY----SLDTRGKFILSIAYSPD----GKYL 179
Query: 229 ASASEDGKVIIWTVAREGDQWEGKVLHDFK---TPVYRVSWSLTGNILAVADGNNNVTLW 285
AS + DG + I+ +A GK+LH + P+ +++S +L A + + ++
Sbjct: 180 ASGAIDGIINIFDIAT------GKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIY 233
Query: 286 E 286
+
Sbjct: 234 D 234
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 78/189 (41%), Gaps = 24/189 (12%)
Query: 9 GHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKF 68
GH V +A G +LA+ +D ++I ++ + + H AV VAW P
Sbjct: 215 GHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTK--TNHNAAVKAVAWC-PWQ 271
Query: 69 GSILASC--SFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDG 126
++LA+ + D + W D S V S+ W+PH + G D
Sbjct: 272 SNLLATGGGTMDKQIHFWNAATGARVNT----VDAGSQVTSLIWSPHSKEIMSTHGFPDN 327
Query: 127 NISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNT 186
N+S+++ + G T ++D P T V ++ + G + L + D
Sbjct: 328 NLSIWSYSSSGL--TKQVDI--PAHDTRVLYSALSPDGRI-----------LSTAASDEN 372
Query: 187 VKVWKLYNG 195
+K W++Y+G
Sbjct: 373 LKFWRVYDG 381
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 62/163 (38%), Gaps = 31/163 (19%)
Query: 58 VWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGL 117
V V W+H GS L+ +G V I+ + K H++ V + W H
Sbjct: 137 VASVKWSHD--GSFLSVGLGNGLVDIY---DVESQTKLRTMAGHQARVGCLSWNRH---- 187
Query: 118 CLACGSSDGNISVFTAR-ADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQ 176
L+ GS G I R A+ T Q H V ++W D +Q
Sbjct: 188 VLSSGSRSGAIHHHDVRIANHQIGTL---QGHSSEVCGLAWRS-------------DGLQ 231
Query: 177 KLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAP 219
L SGG DN V++W + I K H V+ VAW P
Sbjct: 232 -LASGGNDNVVQIWDARSSIPKF----TKTNHNAAVKAVAWCP 269
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 13/114 (11%)
Query: 172 LDPVQKLCSGGC-DNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIAS 230
+ P K+C C D + VW L+N Q HTD + ++ + + +
Sbjct: 149 ISPDSKVCFSCCSDGNIAVWDLHNQTLVRQ----FQGHTDGASCI----DISNDGTKLWT 200
Query: 231 ASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTL 284
D V W + REG Q + HDF + ++ + + TG LAV ++NV +
Sbjct: 201 GGLDNTVRSWDL-REGRQLQQ---HDFTSQIFSLGYCPTGEWLAVGMESSNVEV 250
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 50/122 (40%), Gaps = 4/122 (3%)
Query: 9 GHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKF 68
H D + +A+ + + S D ++K+ NN + GH+ V VA+ +PK
Sbjct: 95 AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALE-QTFEGHEHFVMCVAF-NPKD 152
Query: 69 GSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNI 128
S AS D TV +W G S + + VN +D+ P + S D I
Sbjct: 153 PSTFASGCLDRTVKVWSLGQSTPNFT--LTTGQERGVNYVDYYPLPDKPYMITASDDLTI 210
Query: 129 SV 130
+
Sbjct: 211 KI 212
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 59/154 (38%), Gaps = 26/154 (16%)
Query: 88 NSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQA 147
N+ E + D FE H + SI A H + GS D + ++ + W + +
Sbjct: 85 NTGEKVVD--FEAHPDYIRSI--AVHPTKPYVLSGSDDLTVKLWNW--ENNWALEQTFEG 138
Query: 148 HPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQM 207
H V V++ P DP SG D TVKVW L P +
Sbjct: 139 HEHFVMCVAFNPK------------DP-STFASGCLDRTVKVWSLGQST------PNFTL 179
Query: 208 HTDWVRDVAWAPNLGLP-KSTIASASEDGKVIIW 240
T R V + LP K + +AS+D + IW
Sbjct: 180 TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 50/122 (40%), Gaps = 4/122 (3%)
Query: 9 GHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKF 68
H D + +A+ + + S D ++K+ NN + GH+ V VA+ +PK
Sbjct: 95 AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALE-QTFEGHEHFVMCVAF-NPKD 152
Query: 69 GSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNI 128
S AS D TV +W G S + + VN +D+ P + S D I
Sbjct: 153 PSTFASGCLDRTVKVWSLGQSTPNFT--LTTGQERGVNYVDYYPLPDKPYMITASDDLTI 210
Query: 129 SV 130
+
Sbjct: 211 KI 212
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 59/154 (38%), Gaps = 26/154 (16%)
Query: 88 NSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQA 147
N+ E + D FE H + SI A H + GS D + ++ + W + +
Sbjct: 85 NTGEKVVD--FEAHPDYIRSI--AVHPTKPYVLSGSDDLTVKLWNW--ENNWALEQTFEG 138
Query: 148 HPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQM 207
H V V++ P DP SG D TVKVW L P +
Sbjct: 139 HEHFVMCVAFNPK------------DP-STFASGCLDRTVKVWSLGQST------PNFTL 179
Query: 208 HTDWVRDVAWAPNLGLP-KSTIASASEDGKVIIW 240
T R V + LP K + +AS+D + IW
Sbjct: 180 TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 59/154 (38%), Gaps = 26/154 (16%)
Query: 88 NSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQA 147
N+ E + D FE H + SI A H + GS D + ++ + W + +
Sbjct: 85 NTGEKVVD--FEAHPDYIRSI--AVHPTKPYVLSGSDDLTVKLW--NWENNWALEQTFEG 138
Query: 148 HPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQM 207
H V V++ P DP SG D TVKVW L P +
Sbjct: 139 HEHFVMCVAFNPK------------DP-STFASGCLDRTVKVWSLGQST------PNFTL 179
Query: 208 HTDWVRDVAWAPNLGLP-KSTIASASEDGKVIIW 240
T R V + LP K + +AS+D + IW
Sbjct: 180 TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 71/182 (39%), Gaps = 21/182 (11%)
Query: 9 GHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKF 68
H D + +A+ + + S D ++K+ NN + GH+ V VA+ +PK
Sbjct: 95 AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALE-QTFEGHEHFVMCVAF-NPKD 152
Query: 69 GSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNI 128
S AS D TV +W G S + + VN +D+ P + S D I
Sbjct: 153 PSTFASGCLDRTVKVWSLGQSTPNFT--LTTGQERGVNYVDYYPLPDKPYMITASDDLTI 210
Query: 129 SVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVK 188
++ + T + H V+ + P+ P+ + SG D T+K
Sbjct: 211 KIWDYQTKSCVATL---EGHMSNVSFAVFHPTL------------PI--IISGSEDGTLK 253
Query: 189 VW 190
+W
Sbjct: 254 IW 255
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 59/154 (38%), Gaps = 26/154 (16%)
Query: 88 NSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQA 147
N+ E + D FE H + SI A H + GS D + ++ + W + +
Sbjct: 85 NTGEKVVD--FEAHPDYIRSI--AVHPTKPYVLSGSDDLTVKLWNW--ENNWALEQTFEG 138
Query: 148 HPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQM 207
H V V++ P DP SG D TVKVW L P +
Sbjct: 139 HEHFVMCVAFNPK------------DP-STFASGCLDRTVKVWSLGQST------PNFTL 179
Query: 208 HTDWVRDVAWAPNLGLP-KSTIASASEDGKVIIW 240
T R V + LP K + +AS+D + IW
Sbjct: 180 TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213
Score = 30.8 bits (68), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 71/182 (39%), Gaps = 21/182 (11%)
Query: 9 GHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKF 68
H D + +A+ + + S D ++K+ NN + GH+ V VA+ +PK
Sbjct: 95 AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALE-QTFEGHEHFVMCVAF-NPKD 152
Query: 69 GSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNI 128
S AS D TV +W G S + + VN +D+ P + S D I
Sbjct: 153 PSTFASGCLDRTVKVWSLGQSTPNFT--LTTGQERGVNYVDYYPLPDKPYMITASDDLTI 210
Query: 129 SVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVK 188
++ + T + H V+ + P+ P+ + SG D T+K
Sbjct: 211 KIWDYQTKSCVATL---EGHMSNVSFAVFHPTL------------PI--IISGSEDGTLK 253
Query: 189 VW 190
+W
Sbjct: 254 IW 255
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 84/221 (38%), Gaps = 47/221 (21%)
Query: 9 GHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKF 68
GH+ V V +D + + S D +IK+ + Q LA L GH V +V +
Sbjct: 105 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTI---KGQCLATLLGHNDWVSQVRVVPNEK 161
Query: 69 GS----ILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSS 124
+ S D V W N N++ + F H S++N++ +P G +A
Sbjct: 162 ADDDSVTIISAGNDKMVKAW---NLNQFQIEADFIGHNSNINTLTASPD--GTLIASAGK 216
Query: 125 DGNISVFTARADGGWDT-SRIDQAHPVGVTSVSW--APSTAPGALVGSGFLDPV------ 175
DG I ++ A T S D+ + + + A +TA G V S LDP
Sbjct: 217 DGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFS--LDPQYLVDDL 274
Query: 176 ------------------------QKLCSGGCDNTVKVWKL 192
Q L +G DN ++VW++
Sbjct: 275 RPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 71/175 (40%), Gaps = 25/175 (14%)
Query: 69 GSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNI 128
G+ S S+D T+ +W + + F HKS V S+D + + GS D I
Sbjct: 77 GAYALSASWDKTLRLWDVATGETYQR---FVGHKSDVMSVD--IDKKASMIISGSRDKTI 131
Query: 129 SVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVK 188
V+T + G + + H V+ V P+ D + S G D VK
Sbjct: 132 KVWTIK--GQCLATLL--GHNDWVSQVRVVPNEKAD--------DDSVTIISAGNDKMVK 179
Query: 189 VWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVA 243
W L + D H + + +P+ L IASA +DG++++W +A
Sbjct: 180 AWNLNQFQIEADFIG----HNSNINTLTASPDGTL----IASAGKDGEIMLWNLA 226
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 84/221 (38%), Gaps = 47/221 (21%)
Query: 9 GHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKF 68
GH+ V V +D + + S D +IK+ + Q LA L GH V +V +
Sbjct: 99 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTI---KGQCLATLLGHNDWVSQVRVVPNEK 155
Query: 69 GS----ILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSS 124
+ S D V W N N++ + F H S++N++ +P G +A
Sbjct: 156 ADDDSVTIISAGNDKMVKAW---NLNQFQIEADFIGHNSNINTLTASPD--GTLIASAGK 210
Query: 125 DGNISVFTARADGGWDT-SRIDQAHPVGVTSVSW--APSTAPGALVGSGFLDPV------ 175
DG I ++ A T S D+ + + + A +TA G V S LDP
Sbjct: 211 DGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFS--LDPQYLVDDL 268
Query: 176 ------------------------QKLCSGGCDNTVKVWKL 192
Q L +G DN ++VW++
Sbjct: 269 RPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 309
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 71/175 (40%), Gaps = 25/175 (14%)
Query: 69 GSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNI 128
G+ S S+D T+ +W + + F HKS V S+D + + GS D I
Sbjct: 71 GAYALSASWDKTLRLWDVATGETYQR---FVGHKSDVMSVD--IDKKASMIISGSRDKTI 125
Query: 129 SVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVK 188
V+T + G + + H V+ V P+ D + S G D VK
Sbjct: 126 KVWTIK--GQCLATLL--GHNDWVSQVRVVPNEKAD--------DDSVTIISAGNDKMVK 173
Query: 189 VWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVA 243
W L + D H + + +P+ L IASA +DG++++W +A
Sbjct: 174 AWNLNQFQIEADFIG----HNSNINTLTASPDGTL----IASAGKDGEIMLWNLA 220
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 84/221 (38%), Gaps = 47/221 (21%)
Query: 9 GHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKF 68
GH+ V V +D + + S D +IK+ + Q LA L GH V +V +
Sbjct: 105 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTI---KGQCLATLLGHNDWVSQVRVVPNEK 161
Query: 69 GS----ILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSS 124
+ S D V W N N++ + F H S++N++ +P G +A
Sbjct: 162 ADDDSVTIISAGNDKMVKAW---NLNQFQIEADFIGHNSNINTLTASPD--GTLIASAGK 216
Query: 125 DGNISVFTARADGGWDT-SRIDQAHPVGVTSVSW--APSTAPGALVGSGFLDPV------ 175
DG I ++ A T S D+ + + + A +TA G V S LDP
Sbjct: 217 DGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFS--LDPQYLVDDL 274
Query: 176 ------------------------QKLCSGGCDNTVKVWKL 192
Q L +G DN ++VW++
Sbjct: 275 RPEFAGYSAAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 71/175 (40%), Gaps = 25/175 (14%)
Query: 69 GSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNI 128
G+ S S+D T+ +W + + F HKS V S+D + + GS D I
Sbjct: 77 GAYALSASWDKTLRLWDVATGETYQR---FVGHKSDVMSVD--IDKKASMIISGSRDKTI 131
Query: 129 SVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVK 188
V+T + G + + H V+ V P+ D + S G D VK
Sbjct: 132 KVWTIK--GQCLATLL--GHNDWVSQVRVVPNEKAD--------DDSVTIISAGNDKMVK 179
Query: 189 VWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVA 243
W L + D H + + +P+ L IASA +DG++++W +A
Sbjct: 180 AWNLNQFQIEADFIG----HNSNINTLTASPDGTL----IASAGKDGEIMLWNLA 226
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 84/221 (38%), Gaps = 47/221 (21%)
Query: 9 GHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKF 68
GH+ V V +D + + S D +IK+ + Q LA L GH V +V +
Sbjct: 105 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTI---KGQCLATLLGHNDWVSQVRVVPNEK 161
Query: 69 GS----ILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSS 124
+ S D V W N N++ + F H S++N++ +P G +A
Sbjct: 162 ADDDSVTIISAGNDKMVKAW---NLNQFQIEADFIGHNSNINTLTASPD--GTLIASAGK 216
Query: 125 DGNISVFTARADGGWDT-SRIDQAHPVGVTSVSW--APSTAPGALVGSGFLDPV------ 175
DG I ++ A T S D+ + + + A +TA G V S LDP
Sbjct: 217 DGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFS--LDPQYLVDDL 274
Query: 176 ------------------------QKLCSGGCDNTVKVWKL 192
Q L +G DN ++VW++
Sbjct: 275 RPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 71/175 (40%), Gaps = 25/175 (14%)
Query: 69 GSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNI 128
G+ S S+D T+ +W + + F HKS V S+D + + GS D I
Sbjct: 77 GAYALSASWDKTLRLWDVATGETYQR---FVGHKSDVMSVD--IDKKASMIISGSRDKTI 131
Query: 129 SVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVK 188
V+T + G + + H V+ V P+ D + S G D VK
Sbjct: 132 KVWTIK--GQCLATLL--GHNDWVSQVRVVPNEKAD--------DDSVTIISAGNDKMVK 179
Query: 189 VWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVA 243
W L + D H + + +P+ L IASA +DG++++W +A
Sbjct: 180 AWNLNQFQIEADFIG----HNSNINTLTASPDGTL----IASAGKDGEIMLWNLA 226
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 71/175 (40%), Gaps = 25/175 (14%)
Query: 69 GSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNI 128
G+ S S+D T+ +W + + F HKS V S+D + + GS D I
Sbjct: 77 GAYALSASWDKTLRLWDVATGETYQR---FVGHKSDVMSVD--IDKKASMIISGSRDKTI 131
Query: 129 SVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVK 188
V+T + G + + H V+ V P+ D + S G D VK
Sbjct: 132 KVWTIK--GQCLATLL--GHNDWVSQVRVVPNEKAD--------DDSVTIISAGNDKMVK 179
Query: 189 VWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVA 243
W L + D H + + +P+ L IASA +DG++++W +A
Sbjct: 180 AWNLNQFQIEADFIG----HNSNINTLTASPDGTL----IASAGKDGEIMLWNLA 226
Score = 31.6 bits (70), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 83/220 (37%), Gaps = 47/220 (21%)
Query: 9 GHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKF 68
GH+ V V +D + + S D +IK+ + Q LA L GH V +V +
Sbjct: 105 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTI---KGQCLATLLGHNDWVSQVRVVPNEK 161
Query: 69 GS----ILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSS 124
+ S D V W N N++ + F H S++N++ +P G +A
Sbjct: 162 ADDDSVTIISAGNDKMVKAW---NLNQFQIEADFIGHNSNINTLTASPD--GTLIASAGK 216
Query: 125 DGNISVFTARADGGWDT-SRIDQAHPVGVTSVSW--APSTAPGALVGSGFLDPV------ 175
DG I ++ A T S D+ + + + A +TA G V S LDP
Sbjct: 217 DGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFS--LDPQYLVDDL 274
Query: 176 ------------------------QKLCSGGCDNTVKVWK 191
Q L +G DN ++VW+
Sbjct: 275 RPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 201 CFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIW 240
C LQ H+ V + W P K+ I SAS+DG++I+W
Sbjct: 58 CCRTLQGHSGKVYSLDWTPE----KNWIVSASQDGRLIVW 93
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 14/68 (20%)
Query: 204 ALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYR 263
A+++H WV + A+APN ++A D I+ ++ + D+ D PV R
Sbjct: 103 AIKLHCPWVMECAFAPN----GQSVACGGLDSACSIFNLSSQADR-------DGNMPVSR 151
Query: 264 VSWSLTGN 271
V LTG+
Sbjct: 152 V---LTGH 156
>pdb|4B4P|A Chain A, Crystal Structure Of The Lectin Domain Of F18 Fimbrial
Adhesin Fedf.
pdb|4B4P|B Chain B, Crystal Structure Of The Lectin Domain Of F18 Fimbrial
Adhesin Fedf.
pdb|4B4Q|A Chain A, Crystal Structure Of The Lectin Domain Of F18 Fimbrial
Adhesin Fedf In Complex With Blood Group A Type 1
Hexasaccharide
pdb|4B4Q|B Chain B, Crystal Structure Of The Lectin Domain Of F18 Fimbrial
Adhesin Fedf In Complex With Blood Group A Type 1
Hexasaccharide
pdb|4B4R|A Chain A, Crystal Structure Of The Lectin Domain Of F18 Fimbrial
Adhesin Fedf In Complex With Blood Group B Type 1
Hexasaccharide
pdb|4B4R|B Chain B, Crystal Structure Of The Lectin Domain Of F18 Fimbrial
Adhesin Fedf In Complex With Blood Group B Type 1
Hexasaccharide
Length = 151
Score = 31.2 bits (69), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 21/108 (19%), Positives = 46/108 (42%), Gaps = 6/108 (5%)
Query: 27 ATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE 86
+ +S+ + ++G G + + L + ++ V + G++ GT+++WK
Sbjct: 3 SASSAQVTGTLLGTGKTNTTQMPALYTWQHQIYNVNFIPSSSGTLTCQA---GTILVWKN 59
Query: 87 GNSNEWIKDHVFEDHKS--SVNSIDWAPH-ELGLCLACGSSDGNISVF 131
G ++ + H S S+N W ++G ACG+ + F
Sbjct: 60 GRETQYALECRVSIHHSSGSINESQWGQQSQVGFGTACGNKKCRFTGF 107
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 31.2 bits (69), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 9 GHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKF 68
GH + + + K L +AS D +++I GN SQ+ GH ++ +W
Sbjct: 245 GHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNC--FYGHSQSIVSASWVGD-- 300
Query: 69 GSILASCSFDGTVIIW 84
+ SCS DG+V +W
Sbjct: 301 -DKVISCSMDGSVRLW 315
Score = 30.8 bits (68), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 8/87 (9%)
Query: 50 KLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSID 109
KL GH G + + + +L S S DGT+ IW GN N + F H S+ S
Sbjct: 242 KLIGHHGPISVLEFNDTN--KLLLSASDDGTLRIWHGGNGN---SQNCFYGHSQSIVSAS 296
Query: 110 WAPHELGLCLACGSSDGNISVFTARAD 136
W + ++C S DG++ +++ + +
Sbjct: 297 WVGDD--KVISC-SMDGSVRLWSLKQN 320
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 10/118 (8%)
Query: 4 QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAW 63
++I+ H + + G+ L ++S D +KI V + ++ L GH+ V ++A
Sbjct: 132 REIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPR--TLIGHRATVTDIAI 189
Query: 64 AHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSI------DWAPHEL 115
G + S S DGT+ +W+ G + E+ VNSI D HE+
Sbjct: 190 IDR--GRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEI 245
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 10/118 (8%)
Query: 4 QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAW 63
++I+ H + + G+ L ++S D +KI V + ++ L GH+ V ++A
Sbjct: 129 REIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPR--TLIGHRATVTDIAI 186
Query: 64 AHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSI------DWAPHEL 115
G + S S DGT+ +W+ G + E+ VNSI D HE+
Sbjct: 187 IDR--GRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEI 242
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 18/119 (15%)
Query: 177 KLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGK 236
++ SG DNTV +++ +K HT +V V + P+ L AS DG
Sbjct: 162 RIISGSDDNTVAIFEGPPFKFK----STFGEHTKFVHSVRYNPDGSL----FASTGGDGT 213
Query: 237 VIIW-------TVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEEA 288
++++ T E D + V H V+ ++WS G +A A + + +W A
Sbjct: 214 IVLYNGVDGTKTGVFEDDSLK-NVAH--SGSVFGLTWSPDGTKIASASADKTIKIWNVA 269
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 74/193 (38%), Gaps = 44/193 (22%)
Query: 14 VHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHL---------AKLSGHKGAVWEVAWA 64
V D++ D KR+A +G G H+ L+G A+ V +
Sbjct: 106 VKDISWDSESKRIAA---------VGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFK 156
Query: 65 HPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSS 124
+ I+ S S D TV I+ EG ++ F +H V+S+ + P G A
Sbjct: 157 PSRPFRII-SGSDDNTVAIF-EGPPFKF--KSTFGEHTKFVHSVRYNPD--GSLFASTGG 210
Query: 125 DGNISVFTARADGG-----WDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLC 179
DG I ++ DG D S + AH V ++W+P K+
Sbjct: 211 DGTIVLYNG-VDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT--------------KIA 255
Query: 180 SGGCDNTVKVWKL 192
S D T+K+W +
Sbjct: 256 SASADKTIKIWNV 268
>pdb|4GQ1|A Chain A, Nup37 Of S. Pombe
pdb|4GQ2|P Chain P, S. Pombe Nup120-Nup37 Complex
Length = 393
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 9/109 (8%)
Query: 184 DNTVKVWKLYN-GIWKMDCFPALQMHTDWVRDV----AWAPNLGLPKSTIASASEDGKVI 238
DNTV++ N I H ++V D+ ++ + L + IAS +D +I
Sbjct: 110 DNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLI 169
Query: 239 IWTVAREGDQWEGKVLHDFKTPVYRVSWSLTG-NILAVADGNNNVTLWE 286
IW + EG G + +P V + + N L V + N N+ +++
Sbjct: 170 IWRLTDEGPILAG---YPLSSPGISVQFRPSNPNQLIVGERNGNIRIFD 215
>pdb|4FHL|A Chain A, Nucleoporin Nup37 From Schizosaccharomyces Pombe
pdb|4FHM|A Chain A, Nup37-Nup120(Aa1-961) Complex From Schizosaccharomyces
Pombe
pdb|4FHN|A Chain A, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
pdb|4FHN|C Chain C, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
Length = 394
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 9/109 (8%)
Query: 184 DNTVKVWKLYN-GIWKMDCFPALQMHTDWVRDV----AWAPNLGLPKSTIASASEDGKVI 238
DNTV++ N I H ++V D+ ++ + L + IAS +D +I
Sbjct: 111 DNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLI 170
Query: 239 IWTVAREGDQWEGKVLHDFKTPVYRVSWSLTG-NILAVADGNNNVTLWE 286
IW + EG G + +P V + + N L V + N N+ +++
Sbjct: 171 IWRLTDEGPILAG---YPLSSPGISVQFRPSNPNQLIVGERNGNIRIFD 216
>pdb|1RI6|A Chain A, Structure Of A Putative Isomerase From E. Coli
Length = 343
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 18/84 (21%)
Query: 179 CSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKS------------ 226
C +++V VW+L + ++C L M + D WA ++ +
Sbjct: 194 CVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTAS 253
Query: 227 --TIASASEDGKVIIWTVAREGDQ 248
T+ S SEDG V+ ++EG Q
Sbjct: 254 LITVFSVSEDGSVL----SKEGFQ 273
>pdb|2XNT|A Chain A, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNT|B Chain B, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNT|C Chain C, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNT|D Chain D, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNT|E Chain E, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNT|F Chain F, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNT|G Chain G, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNT|H Chain H, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNT|I Chain I, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNT|J Chain J, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNU|A Chain A, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNU|B Chain B, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNU|C Chain C, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNU|D Chain D, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNU|E Chain E, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNV|A Chain A, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNV|B Chain B, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNV|C Chain C, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNV|D Chain D, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNV|E Chain E, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNV|F Chain F, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNV|G Chain G, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNV|H Chain H, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNV|I Chain I, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNV|J Chain J, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
Length = 236
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 63/158 (39%), Gaps = 23/158 (14%)
Query: 34 SIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHP---KFGSILASCSFDGTVIIWKEGNSN 90
++ + VG SQ A L K ++ + +P K + + F I+ + ++N
Sbjct: 8 ALLVACVGQAHSQ--ANLMRLKSDLFNRSPMYPGPTKDDPLTVTLGFTLQDIVKVDSSTN 65
Query: 91 EWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGW--DTSRIDQAH 148
E + +E + +NS+ W P+E GNI+ F A W D +
Sbjct: 66 E-VDLVYYEQQRWKLNSLMWDPNEY----------GNITDFRTSAADIWTPDITAYSSTR 114
Query: 149 PVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNT 186
PV V S P A GS P Q+L S CD T
Sbjct: 115 PVQVLS----PQIAVVTHDGSVMFIPAQRL-SFMCDPT 147
>pdb|3GUA|A Chain A, Sulfates Bound In The Vestibule Of Achbp
pdb|3GUA|B Chain B, Sulfates Bound In The Vestibule Of Achbp
pdb|3GUA|C Chain C, Sulfates Bound In The Vestibule Of Achbp
pdb|3GUA|D Chain D, Sulfates Bound In The Vestibule Of Achbp
pdb|3GUA|E Chain E, Sulfates Bound In The Vestibule Of Achbp
pdb|3GUA|F Chain F, Sulfates Bound In The Vestibule Of Achbp
pdb|3GUA|G Chain G, Sulfates Bound In The Vestibule Of Achbp
pdb|3GUA|H Chain H, Sulfates Bound In The Vestibule Of Achbp
pdb|3GUA|I Chain I, Sulfates Bound In The Vestibule Of Achbp
pdb|3GUA|J Chain J, Sulfates Bound In The Vestibule Of Achbp
Length = 217
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 56/143 (39%), Gaps = 21/143 (14%)
Query: 49 AKLSGHKGAVWEVAWAHP---KFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSV 105
A L K ++ + +P K + + F I+ + ++NE + +E + +
Sbjct: 13 ANLMRLKSDLFNRSPMYPGPTKDDPLTVTLGFTLQDIVKADSSTNE-VDLVYYEQQRWKL 71
Query: 106 NSIDWAPHELGLCLACGSSDGNISVFTARADGGW--DTSRIDQAHPVGVTSVSWAPSTAP 163
NS+ W P+E GNI+ F A W D + PV V S P A
Sbjct: 72 NSLMWDPNEY----------GNITDFRTSAADIWTPDITAYSSTRPVQVLS----PQIAV 117
Query: 164 GALVGSGFLDPVQKLCSGGCDNT 186
GS P Q+L S CD T
Sbjct: 118 VTHDGSVMFIPAQRL-SFMCDPT 139
>pdb|2BYP|A Chain A, Crystal Structure Of Aplysia Californica Achbp In Complex
With Alpha-Conotoxin Imi
pdb|2BYP|B Chain B, Crystal Structure Of Aplysia Californica Achbp In Complex
With Alpha-Conotoxin Imi
pdb|2BYP|C Chain C, Crystal Structure Of Aplysia Californica Achbp In Complex
With Alpha-Conotoxin Imi
pdb|2BYP|D Chain D, Crystal Structure Of Aplysia Californica Achbp In Complex
With Alpha-Conotoxin Imi
pdb|2BYP|E Chain E, Crystal Structure Of Aplysia Californica Achbp In Complex
With Alpha-Conotoxin Imi
Length = 214
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 56/143 (39%), Gaps = 21/143 (14%)
Query: 49 AKLSGHKGAVWEVAWAHP---KFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSV 105
A L K ++ + +P K + + F I+ + ++NE + +E + +
Sbjct: 10 ANLMRLKSDLFNRSPMYPGPTKDDPLTVTLGFTLQDIVKADSSTNE-VDLVYYEQQRWKL 68
Query: 106 NSIDWAPHELGLCLACGSSDGNISVFTARADGGW--DTSRIDQAHPVGVTSVSWAPSTAP 163
NS+ W P+E GNI+ F A W D + PV V S P A
Sbjct: 69 NSLMWDPNEY----------GNITDFRTSAADIWTPDITAYSSTRPVQVLS----PQIAV 114
Query: 164 GALVGSGFLDPVQKLCSGGCDNT 186
GS P Q+L S CD T
Sbjct: 115 VTHDGSVMFIPAQRL-SFMCDPT 136
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
Query: 5 KIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWA 64
K + H V DV G ++ TAS D + K+ + +N + +A+ H V + W
Sbjct: 80 KAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQ---HDAPVKTIHWI 136
Query: 65 HPKFGSILASCSFDGTVIIWKEGNSNEWI 93
S + + S+D T+ W +SN +
Sbjct: 137 KAPNYSCVMTGSWDKTLKFWDTRSSNPMM 165
>pdb|2YMD|A Chain A, Crystal Structure Of A Mutant Binding Protein
(5htbp-achbp) In Complex With Serotonin
(5-hydroxytryptamine)
pdb|2YMD|B Chain B, Crystal Structure Of A Mutant Binding Protein
(5htbp-achbp) In Complex With Serotonin
(5-hydroxytryptamine)
pdb|2YMD|C Chain C, Crystal Structure Of A Mutant Binding Protein
(5htbp-achbp) In Complex With Serotonin
(5-hydroxytryptamine)
pdb|2YMD|D Chain D, Crystal Structure Of A Mutant Binding Protein
(5htbp-achbp) In Complex With Serotonin
(5-hydroxytryptamine)
pdb|2YMD|E Chain E, Crystal Structure Of A Mutant Binding Protein
(5htbp-achbp) In Complex With Serotonin
(5-hydroxytryptamine)
pdb|2YMD|F Chain F, Crystal Structure Of A Mutant Binding Protein
(5htbp-achbp) In Complex With Serotonin
(5-hydroxytryptamine)
pdb|2YMD|G Chain G, Crystal Structure Of A Mutant Binding Protein
(5htbp-achbp) In Complex With Serotonin
(5-hydroxytryptamine)
pdb|2YMD|H Chain H, Crystal Structure Of A Mutant Binding Protein
(5htbp-achbp) In Complex With Serotonin
(5-hydroxytryptamine)
pdb|2YMD|I Chain I, Crystal Structure Of A Mutant Binding Protein
(5htbp-achbp) In Complex With Serotonin
(5-hydroxytryptamine)
pdb|2YMD|J Chain J, Crystal Structure Of A Mutant Binding Protein
(5htbp-achbp) In Complex With Serotonin
(5-hydroxytryptamine)
Length = 212
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 58/144 (40%), Gaps = 23/144 (15%)
Query: 49 AKLSGHKGAVWEVAWAHP---KFGSILASCSFDGTVIIWKEGNSNEWIKDHVF-EDHKSS 104
A L K ++ + +P K + + F I+ + ++NE D V+ E +
Sbjct: 2 ANLMRLKSDLFNRSPMYPGPTKDDPLTVTLGFTLQDIVKVDSSTNE--VDLVYWEQQRWK 59
Query: 105 VNSIDWAPHELGLCLACGSSDGNISVFTARADGGW--DTSRIDQAHPVGVTSVSWAPSTA 162
+NS+ W P+E GNI+ F A W D + + PV V S P A
Sbjct: 60 LNSLMWDPNEY----------GNITDFRTSAADIWTPDITAYESTRPVQVLS----PQIA 105
Query: 163 PGALVGSGFLDPVQKLCSGGCDNT 186
GS P Q+L S CD T
Sbjct: 106 VVTHDGSVMFIPAQRL-SFMCDPT 128
>pdb|2WN9|A Chain A, Crystal Structure Of Aplysia Achbp In Complex With 4-0h-
Dmxba
pdb|2WN9|B Chain B, Crystal Structure Of Aplysia Achbp In Complex With 4-0h-
Dmxba
pdb|2WN9|C Chain C, Crystal Structure Of Aplysia Achbp In Complex With 4-0h-
Dmxba
pdb|2WN9|D Chain D, Crystal Structure Of Aplysia Achbp In Complex With 4-0h-
Dmxba
pdb|2WN9|E Chain E, Crystal Structure Of Aplysia Achbp In Complex With 4-0h-
Dmxba
pdb|2WNJ|A Chain A, Crystal Structure Of Aplysia Achbp In Complex With Dmxba
pdb|2WNJ|B Chain B, Crystal Structure Of Aplysia Achbp In Complex With Dmxba
pdb|2WNJ|C Chain C, Crystal Structure Of Aplysia Achbp In Complex With Dmxba
pdb|2WNJ|D Chain D, Crystal Structure Of Aplysia Achbp In Complex With Dmxba
pdb|2WNJ|E Chain E, Crystal Structure Of Aplysia Achbp In Complex With Dmxba
pdb|2WZY|A Chain A, Crystal Structure Of A-Achbp In Complex With 13-Desmethyl
Spirolide C
pdb|2WZY|B Chain B, Crystal Structure Of A-Achbp In Complex With 13-Desmethyl
Spirolide C
pdb|2WZY|C Chain C, Crystal Structure Of A-Achbp In Complex With 13-Desmethyl
Spirolide C
pdb|2WZY|D Chain D, Crystal Structure Of A-Achbp In Complex With 13-Desmethyl
Spirolide C
pdb|2WZY|E Chain E, Crystal Structure Of A-Achbp In Complex With 13-Desmethyl
Spirolide C
pdb|2WZY|F Chain F, Crystal Structure Of A-Achbp In Complex With 13-Desmethyl
Spirolide C
pdb|2WZY|G Chain G, Crystal Structure Of A-Achbp In Complex With 13-Desmethyl
Spirolide C
pdb|2WZY|H Chain H, Crystal Structure Of A-Achbp In Complex With 13-Desmethyl
Spirolide C
pdb|2WZY|I Chain I, Crystal Structure Of A-Achbp In Complex With 13-Desmethyl
Spirolide C
pdb|2WZY|J Chain J, Crystal Structure Of A-Achbp In Complex With 13-Desmethyl
Spirolide C
pdb|2X00|A Chain A, Crystal Structure Of A-Achbp In Complex With Gymnodimine A
pdb|2X00|B Chain B, Crystal Structure Of A-Achbp In Complex With Gymnodimine A
pdb|2X00|C Chain C, Crystal Structure Of A-Achbp In Complex With Gymnodimine A
pdb|2X00|E Chain E, Crystal Structure Of A-Achbp In Complex With Gymnodimine A
pdb|3PEO|A Chain A, Crystal Structure Of Acetylcholine Binding Protein
Complexed With Metocurine
pdb|3PEO|B Chain B, Crystal Structure Of Acetylcholine Binding Protein
Complexed With Metocurine
pdb|3PEO|C Chain C, Crystal Structure Of Acetylcholine Binding Protein
Complexed With Metocurine
pdb|3PEO|D Chain D, Crystal Structure Of Acetylcholine Binding Protein
Complexed With Metocurine
pdb|3PEO|E Chain E, Crystal Structure Of Acetylcholine Binding Protein
Complexed With Metocurine
pdb|3PEO|F Chain F, Crystal Structure Of Acetylcholine Binding Protein
Complexed With Metocurine
pdb|3PEO|G Chain G, Crystal Structure Of Acetylcholine Binding Protein
Complexed With Metocurine
pdb|3PEO|H Chain H, Crystal Structure Of Acetylcholine Binding Protein
Complexed With Metocurine
pdb|3PEO|I Chain I, Crystal Structure Of Acetylcholine Binding Protein
Complexed With Metocurine
pdb|3PEO|J Chain J, Crystal Structure Of Acetylcholine Binding Protein
Complexed With Metocurine
Length = 228
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 56/143 (39%), Gaps = 21/143 (14%)
Query: 49 AKLSGHKGAVWEVAWAHP---KFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSV 105
A L K ++ + +P K + + F I+ + ++NE + +E + +
Sbjct: 13 ANLMRLKSDLFNRSPMYPGPTKDDPLTVTLGFTLQDIVKADSSTNE-VDLVYYEQQRWKL 71
Query: 106 NSIDWAPHELGLCLACGSSDGNISVFTARADGGW--DTSRIDQAHPVGVTSVSWAPSTAP 163
NS+ W P+E GNI+ F A W D + PV V S P A
Sbjct: 72 NSLMWDPNEY----------GNITDFRTSAADIWTPDITAYSSTRPVQVLS----PQIAV 117
Query: 164 GALVGSGFLDPVQKLCSGGCDNT 186
GS P Q+L S CD T
Sbjct: 118 VTHDGSVMFIPAQRL-SFMCDPT 139
>pdb|2BYN|A Chain A, Crystal Structure Of Apo Achbp From Aplysia Californica
pdb|2BYN|B Chain B, Crystal Structure Of Apo Achbp From Aplysia Californica
pdb|2BYN|C Chain C, Crystal Structure Of Apo Achbp From Aplysia Californica
pdb|2BYN|D Chain D, Crystal Structure Of Apo Achbp From Aplysia Californica
pdb|2BYN|E Chain E, Crystal Structure Of Apo Achbp From Aplysia Californica
pdb|2BYQ|A Chain A, Crystal Structure Of Aplysia Californica Achbp In Complex
With Epibatidine
pdb|2BYQ|B Chain B, Crystal Structure Of Aplysia Californica Achbp In Complex
With Epibatidine
pdb|2BYQ|C Chain C, Crystal Structure Of Aplysia Californica Achbp In Complex
With Epibatidine
pdb|2BYQ|D Chain D, Crystal Structure Of Aplysia Californica Achbp In Complex
With Epibatidine
pdb|2BYQ|E Chain E, Crystal Structure Of Aplysia Californica Achbp In Complex
With Epibatidine
pdb|2BYR|A Chain A, Crystal Structure Of Achbp From Aplysia Californica In
Complex With Methyllycaconitine
pdb|2BYR|B Chain B, Crystal Structure Of Achbp From Aplysia Californica In
Complex With Methyllycaconitine
pdb|2BYR|C Chain C, Crystal Structure Of Achbp From Aplysia Californica In
Complex With Methyllycaconitine
pdb|2BYR|D Chain D, Crystal Structure Of Achbp From Aplysia Californica In
Complex With Methyllycaconitine
pdb|2BYR|E Chain E, Crystal Structure Of Achbp From Aplysia Californica In
Complex With Methyllycaconitine
pdb|2BYR|F Chain F, Crystal Structure Of Achbp From Aplysia Californica In
Complex With Methyllycaconitine
pdb|2BYR|G Chain G, Crystal Structure Of Achbp From Aplysia Californica In
Complex With Methyllycaconitine
pdb|2BYR|H Chain H, Crystal Structure Of Achbp From Aplysia Californica In
Complex With Methyllycaconitine
pdb|2BYR|I Chain I, Crystal Structure Of Achbp From Aplysia Californica In
Complex With Methyllycaconitine
pdb|2BYR|J Chain J, Crystal Structure Of Achbp From Aplysia Californica In
Complex With Methyllycaconitine
pdb|2BYS|A Chain A, Crystal Structure Of Achbp From Aplysia Californica In
Complex With Lobeline
pdb|2BYS|B Chain B, Crystal Structure Of Achbp From Aplysia Californica In
Complex With Lobeline
pdb|2BYS|C Chain C, Crystal Structure Of Achbp From Aplysia Californica In
Complex With Lobeline
pdb|2BYS|D Chain D, Crystal Structure Of Achbp From Aplysia Californica In
Complex With Lobeline
pdb|2BYS|E Chain E, Crystal Structure Of Achbp From Aplysia Californica In
Complex With Lobeline
pdb|2BYS|F Chain F, Crystal Structure Of Achbp From Aplysia Californica In
Complex With Lobeline
pdb|2BYS|G Chain G, Crystal Structure Of Achbp From Aplysia Californica In
Complex With Lobeline
pdb|2BYS|H Chain H, Crystal Structure Of Achbp From Aplysia Californica In
Complex With Lobeline
pdb|2BYS|I Chain I, Crystal Structure Of Achbp From Aplysia Californica In
Complex With Lobeline
pdb|2BYS|J Chain J, Crystal Structure Of Achbp From Aplysia Californica In
Complex With Lobeline
pdb|3C79|A Chain A, Crystal Structure Of Aplysia Californica Achbp In Complex
With The Neonicotinoid Imidacloprid
pdb|3C79|B Chain B, Crystal Structure Of Aplysia Californica Achbp In Complex
With The Neonicotinoid Imidacloprid
pdb|3C79|C Chain C, Crystal Structure Of Aplysia Californica Achbp In Complex
With The Neonicotinoid Imidacloprid
pdb|3C79|D Chain D, Crystal Structure Of Aplysia Californica Achbp In Complex
With The Neonicotinoid Imidacloprid
pdb|3C79|E Chain E, Crystal Structure Of Aplysia Californica Achbp In Complex
With The Neonicotinoid Imidacloprid
pdb|3C84|A Chain A, Crystal Structure Of A Complex Of Achbp From Aplysia
Californica And The Neonicotinoid Thiacloprid
pdb|3C84|B Chain B, Crystal Structure Of A Complex Of Achbp From Aplysia
Californica And The Neonicotinoid Thiacloprid
pdb|3C84|C Chain C, Crystal Structure Of A Complex Of Achbp From Aplysia
Californica And The Neonicotinoid Thiacloprid
pdb|3C84|D Chain D, Crystal Structure Of A Complex Of Achbp From Aplysia
Californica And The Neonicotinoid Thiacloprid
pdb|3C84|E Chain E, Crystal Structure Of A Complex Of Achbp From Aplysia
Californica And The Neonicotinoid Thiacloprid
pdb|2WNC|A Chain A, Crystal Structure Of Aplysia Achbp In Complex With
Tropisetron
pdb|2WNC|B Chain B, Crystal Structure Of Aplysia Achbp In Complex With
Tropisetron
pdb|2WNC|C Chain C, Crystal Structure Of Aplysia Achbp In Complex With
Tropisetron
pdb|2WNC|D Chain D, Crystal Structure Of Aplysia Achbp In Complex With
Tropisetron
pdb|2WNC|E Chain E, Crystal Structure Of Aplysia Achbp In Complex With
Tropisetron
pdb|2WNL|A Chain A, Crystal Structure Of Aplysia Achbp In Complex With
Anabaseine
pdb|2WNL|B Chain B, Crystal Structure Of Aplysia Achbp In Complex With
Anabaseine
pdb|2WNL|C Chain C, Crystal Structure Of Aplysia Achbp In Complex With
Anabaseine
pdb|2WNL|D Chain D, Crystal Structure Of Aplysia Achbp In Complex With
Anabaseine
pdb|2WNL|E Chain E, Crystal Structure Of Aplysia Achbp In Complex With
Anabaseine
pdb|2WNL|F Chain F, Crystal Structure Of Aplysia Achbp In Complex With
Anabaseine
pdb|2WNL|G Chain G, Crystal Structure Of Aplysia Achbp In Complex With
Anabaseine
pdb|2WNL|H Chain H, Crystal Structure Of Aplysia Achbp In Complex With
Anabaseine
pdb|2WNL|I Chain I, Crystal Structure Of Aplysia Achbp In Complex With
Anabaseine
pdb|2WNL|J Chain J, Crystal Structure Of Aplysia Achbp In Complex With
Anabaseine
Length = 227
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 56/143 (39%), Gaps = 21/143 (14%)
Query: 49 AKLSGHKGAVWEVAWAHP---KFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSV 105
A L K ++ + +P K + + F I+ + ++NE + +E + +
Sbjct: 12 ANLMRLKSDLFNRSPMYPGPTKDDPLTVTLGFTLQDIVKADSSTNE-VDLVYYEQQRWKL 70
Query: 106 NSIDWAPHELGLCLACGSSDGNISVFTARADGGW--DTSRIDQAHPVGVTSVSWAPSTAP 163
NS+ W P+E GNI+ F A W D + PV V S P A
Sbjct: 71 NSLMWDPNEY----------GNITDFRTSAADIWTPDITAYSSTRPVQVLS----PQIAV 116
Query: 164 GALVGSGFLDPVQKLCSGGCDNT 186
GS P Q+L S CD T
Sbjct: 117 VTHDGSVMFIPAQRL-SFMCDPT 138
>pdb|3PMZ|A Chain A, Crystal Structure Of The Complex Of Acetylcholine Binding
Protein And D-Tubocurarine
pdb|3PMZ|B Chain B, Crystal Structure Of The Complex Of Acetylcholine Binding
Protein And D-Tubocurarine
pdb|3PMZ|C Chain C, Crystal Structure Of The Complex Of Acetylcholine Binding
Protein And D-Tubocurarine
pdb|3PMZ|D Chain D, Crystal Structure Of The Complex Of Acetylcholine Binding
Protein And D-Tubocurarine
pdb|3PMZ|E Chain E, Crystal Structure Of The Complex Of Acetylcholine Binding
Protein And D-Tubocurarine
pdb|3PMZ|F Chain F, Crystal Structure Of The Complex Of Acetylcholine Binding
Protein And D-Tubocurarine
pdb|3PMZ|G Chain G, Crystal Structure Of The Complex Of Acetylcholine Binding
Protein And D-Tubocurarine
pdb|3PMZ|H Chain H, Crystal Structure Of The Complex Of Acetylcholine Binding
Protein And D-Tubocurarine
pdb|3PMZ|I Chain I, Crystal Structure Of The Complex Of Acetylcholine Binding
Protein And D-Tubocurarine
pdb|3PMZ|J Chain J, Crystal Structure Of The Complex Of Acetylcholine Binding
Protein And D-Tubocurarine
Length = 227
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 56/143 (39%), Gaps = 21/143 (14%)
Query: 49 AKLSGHKGAVWEVAWAHP---KFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSV 105
A L K ++ + +P K + + F I+ + ++NE + +E + +
Sbjct: 12 ANLMRLKSDLFNRSPMYPGPTKDDPLTVTLGFTLQDIVKADSSTNE-VDLVYYEQQRWKL 70
Query: 106 NSIDWAPHELGLCLACGSSDGNISVFTARADGGW--DTSRIDQAHPVGVTSVSWAPSTAP 163
NS+ W P+E GNI+ F A W D + PV V S P A
Sbjct: 71 NSLMWDPNEY----------GNITDFRTSAADIWTPDITAYSSTRPVQVLS----PQIAV 116
Query: 164 GALVGSGFLDPVQKLCSGGCDNT 186
GS P Q+L S CD T
Sbjct: 117 VTHDGSVMFIPAQRL-SFMCDPT 138
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 105 VNSIDWAPHELGLCLACGSSDGNISVF 131
++S+DW+P + GLC+ C S D + V
Sbjct: 324 ISSLDWSPDKRGLCV-CSSFDQTVRVL 349
>pdb|2PGZ|A Chain A, Crystal Structure Of Cocaine Bound To An Ach-binding
Protein
pdb|2PGZ|B Chain B, Crystal Structure Of Cocaine Bound To An Ach-binding
Protein
pdb|2PGZ|C Chain C, Crystal Structure Of Cocaine Bound To An Ach-binding
Protein
pdb|2PGZ|D Chain D, Crystal Structure Of Cocaine Bound To An Ach-binding
Protein
pdb|2PGZ|E Chain E, Crystal Structure Of Cocaine Bound To An Ach-binding
Protein
pdb|2PH9|A Chain A, Galanthamine Bound To An Ach-Binding Protein
pdb|2PH9|B Chain B, Galanthamine Bound To An Ach-Binding Protein
pdb|2PH9|C Chain C, Galanthamine Bound To An Ach-Binding Protein
pdb|2PH9|D Chain D, Galanthamine Bound To An Ach-Binding Protein
pdb|2PH9|E Chain E, Galanthamine Bound To An Ach-Binding Protein
pdb|4DBM|A Chain A, Aplysia Californica-Achbp In Complex With Triazole 18
pdb|4DBM|B Chain B, Aplysia Californica-Achbp In Complex With Triazole 18
pdb|4DBM|C Chain C, Aplysia Californica-Achbp In Complex With Triazole 18
pdb|4DBM|D Chain D, Aplysia Californica-Achbp In Complex With Triazole 18
pdb|4DBM|E Chain E, Aplysia Californica-Achbp In Complex With Triazole 18
Length = 230
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 56/143 (39%), Gaps = 21/143 (14%)
Query: 49 AKLSGHKGAVWEVAWAHP---KFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSV 105
A L K ++ + +P K + + F I+ + ++NE + +E + +
Sbjct: 13 ANLMRLKSDLFNRSPMYPGPTKDDPLTVTLGFTLQDIVKADSSTNE-VDLVYYEQQRWKL 71
Query: 106 NSIDWAPHELGLCLACGSSDGNISVFTARADGGW--DTSRIDQAHPVGVTSVSWAPSTAP 163
NS+ W P+E GNI+ F A W D + PV V S P A
Sbjct: 72 NSLMWDPNEY----------GNITDFRTSAADIWTPDITAYSSTRPVQVLS----PQIAV 117
Query: 164 GALVGSGFLDPVQKLCSGGCDNT 186
GS P Q+L S CD T
Sbjct: 118 VTHDGSVMFIPAQRL-SFMCDPT 139
>pdb|2X00|D Chain D, Crystal Structure Of A-Achbp In Complex With Gymnodimine A
Length = 227
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 56/143 (39%), Gaps = 21/143 (14%)
Query: 49 AKLSGHKGAVWEVAWAHP---KFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSV 105
A L K ++ + +P K + + F I+ + ++NE + +E + +
Sbjct: 12 ANLMRLKSDLFNRSPMYPGPTKDDPLTVTLGFTLQDIVKADSSTNE-VDLVYYEQQRWKL 70
Query: 106 NSIDWAPHELGLCLACGSSDGNISVFTARADGGW--DTSRIDQAHPVGVTSVSWAPSTAP 163
NS+ W P+E GNI+ F A W D + PV V S P A
Sbjct: 71 NSLMWDPNEY----------GNITDFRTSAADIWTPDITAYSSTRPVQVLS----PQIAV 116
Query: 164 GALVGSGFLDPVQKLCSGGCDNT 186
GS P Q+L S CD T
Sbjct: 117 VTHDGSVMFIPAQRL-SFMCDPT 138
>pdb|2BR7|A Chain A, Crystal Structure Of Acetylcholine-Binding Protein (Achbp)
From Aplysia Californica In Complex With Hepes
pdb|2BR7|B Chain B, Crystal Structure Of Acetylcholine-Binding Protein (Achbp)
From Aplysia Californica In Complex With Hepes
pdb|2BR7|C Chain C, Crystal Structure Of Acetylcholine-Binding Protein (Achbp)
From Aplysia Californica In Complex With Hepes
pdb|2BR7|D Chain D, Crystal Structure Of Acetylcholine-Binding Protein (Achbp)
From Aplysia Californica In Complex With Hepes
pdb|2BR7|E Chain E, Crystal Structure Of Acetylcholine-Binding Protein (Achbp)
From Aplysia Californica In Complex With Hepes
pdb|2BR8|A Chain A, Crystal Structure Of Acetylcholine-Binding Protein (Achbp)
From Aplysia Californica In Complex With An Alpha-
Conotoxin Pnia Variant
pdb|2BR8|B Chain B, Crystal Structure Of Acetylcholine-Binding Protein (Achbp)
From Aplysia Californica In Complex With An Alpha-
Conotoxin Pnia Variant
pdb|2BR8|C Chain C, Crystal Structure Of Acetylcholine-Binding Protein (Achbp)
From Aplysia Californica In Complex With An Alpha-
Conotoxin Pnia Variant
pdb|2BR8|D Chain D, Crystal Structure Of Acetylcholine-Binding Protein (Achbp)
From Aplysia Californica In Complex With An Alpha-
Conotoxin Pnia Variant
pdb|2BR8|E Chain E, Crystal Structure Of Acetylcholine-Binding Protein (Achbp)
From Aplysia Californica In Complex With An Alpha-
Conotoxin Pnia Variant
pdb|2C9T|A Chain A, Crystal Structure Of Acetylcholine Binding Protein (Achbp)
From Aplysia Californica In Complex With Alpha-Conotoxin
Imi
pdb|2C9T|B Chain B, Crystal Structure Of Acetylcholine Binding Protein (Achbp)
From Aplysia Californica In Complex With Alpha-Conotoxin
Imi
pdb|2C9T|C Chain C, Crystal Structure Of Acetylcholine Binding Protein (Achbp)
From Aplysia Californica In Complex With Alpha-Conotoxin
Imi
pdb|2C9T|D Chain D, Crystal Structure Of Acetylcholine Binding Protein (Achbp)
From Aplysia Californica In Complex With Alpha-Conotoxin
Imi
pdb|2C9T|E Chain E, Crystal Structure Of Acetylcholine Binding Protein (Achbp)
From Aplysia Californica In Complex With Alpha-Conotoxin
Imi
pdb|2C9T|F Chain F, Crystal Structure Of Acetylcholine Binding Protein (Achbp)
From Aplysia Californica In Complex With Alpha-Conotoxin
Imi
pdb|2C9T|G Chain G, Crystal Structure Of Acetylcholine Binding Protein (Achbp)
From Aplysia Californica In Complex With Alpha-Conotoxin
Imi
pdb|2C9T|H Chain H, Crystal Structure Of Acetylcholine Binding Protein (Achbp)
From Aplysia Californica In Complex With Alpha-Conotoxin
Imi
pdb|2C9T|I Chain I, Crystal Structure Of Acetylcholine Binding Protein (Achbp)
From Aplysia Californica In Complex With Alpha-Conotoxin
Imi
pdb|2C9T|J Chain J, Crystal Structure Of Acetylcholine Binding Protein (Achbp)
From Aplysia Californica In Complex With Alpha-Conotoxin
Imi
pdb|2UZ6|A Chain A, Achbp-targeted A-conotoxin Correlates Distinct Binding
Orientations With Nachr Subtype Selectivity.
pdb|2UZ6|B Chain B, Achbp-targeted A-conotoxin Correlates Distinct Binding
Orientations With Nachr Subtype Selectivity.
pdb|2UZ6|C Chain C, Achbp-targeted A-conotoxin Correlates Distinct Binding
Orientations With Nachr Subtype Selectivity.
pdb|2UZ6|D Chain D, Achbp-targeted A-conotoxin Correlates Distinct Binding
Orientations With Nachr Subtype Selectivity.
pdb|2UZ6|E Chain E, Achbp-targeted A-conotoxin Correlates Distinct Binding
Orientations With Nachr Subtype Selectivity.
pdb|2UZ6|F Chain F, Achbp-targeted A-conotoxin Correlates Distinct Binding
Orientations With Nachr Subtype Selectivity.
pdb|2UZ6|G Chain G, Achbp-targeted A-conotoxin Correlates Distinct Binding
Orientations With Nachr Subtype Selectivity.
pdb|2UZ6|H Chain H, Achbp-targeted A-conotoxin Correlates Distinct Binding
Orientations With Nachr Subtype Selectivity.
pdb|2UZ6|I Chain I, Achbp-targeted A-conotoxin Correlates Distinct Binding
Orientations With Nachr Subtype Selectivity.
pdb|2UZ6|J Chain J, Achbp-targeted A-conotoxin Correlates Distinct Binding
Orientations With Nachr Subtype Selectivity.
pdb|2W8F|A Chain A, Aplysia Californica Achbp Bound To In Silico Compound 31
pdb|2W8F|B Chain B, Aplysia Californica Achbp Bound To In Silico Compound 31
pdb|2W8F|C Chain C, Aplysia Californica Achbp Bound To In Silico Compound 31
pdb|2W8F|D Chain D, Aplysia Californica Achbp Bound To In Silico Compound 31
pdb|2W8F|E Chain E, Aplysia Californica Achbp Bound To In Silico Compound 31
pdb|2W8F|F Chain F, Aplysia Californica Achbp Bound To In Silico Compound 31
pdb|2W8F|G Chain G, Aplysia Californica Achbp Bound To In Silico Compound 31
pdb|2W8F|H Chain H, Aplysia Californica Achbp Bound To In Silico Compound 31
pdb|2W8F|I Chain I, Aplysia Californica Achbp Bound To In Silico Compound 31
pdb|2W8F|J Chain J, Aplysia Californica Achbp Bound To In Silico Compound 31
pdb|2W8G|A Chain A, Aplysia Californica Achbp Bound To In Silico Compound 35
pdb|2W8G|B Chain B, Aplysia Californica Achbp Bound To In Silico Compound 35
pdb|2W8G|C Chain C, Aplysia Californica Achbp Bound To In Silico Compound 35
pdb|2W8G|D Chain D, Aplysia Californica Achbp Bound To In Silico Compound 35
pdb|2W8G|E Chain E, Aplysia Californica Achbp Bound To In Silico Compound 35
pdb|2XYS|A Chain A, Crystal Structure Of Aplysia Californica Achbp In Complex
With Strychnine
pdb|2XYS|B Chain B, Crystal Structure Of Aplysia Californica Achbp In Complex
With Strychnine
pdb|2XYS|C Chain C, Crystal Structure Of Aplysia Californica Achbp In Complex
With Strychnine
pdb|2XYS|D Chain D, Crystal Structure Of Aplysia Californica Achbp In Complex
With Strychnine
pdb|2XYS|E Chain E, Crystal Structure Of Aplysia Californica Achbp In Complex
With Strychnine
pdb|2XYT|A Chain A, Crystal Structure Of Aplysia Californica Achbp In Complex
With D-Tubocurarine
pdb|2XYT|B Chain B, Crystal Structure Of Aplysia Californica Achbp In Complex
With D-Tubocurarine
pdb|2XYT|C Chain C, Crystal Structure Of Aplysia Californica Achbp In Complex
With D-Tubocurarine
pdb|2XYT|D Chain D, Crystal Structure Of Aplysia Californica Achbp In Complex
With D-Tubocurarine
pdb|2XYT|E Chain E, Crystal Structure Of Aplysia Californica Achbp In Complex
With D-Tubocurarine
pdb|2XYT|F Chain F, Crystal Structure Of Aplysia Californica Achbp In Complex
With D-Tubocurarine
pdb|2XYT|G Chain G, Crystal Structure Of Aplysia Californica Achbp In Complex
With D-Tubocurarine
pdb|2XYT|H Chain H, Crystal Structure Of Aplysia Californica Achbp In Complex
With D-Tubocurarine
pdb|2XYT|I Chain I, Crystal Structure Of Aplysia Californica Achbp In Complex
With D-Tubocurarine
pdb|2XYT|J Chain J, Crystal Structure Of Aplysia Californica Achbp In Complex
With D-Tubocurarine
pdb|2Y7Y|A Chain A, Aplysia Californica Achbp In Apo State
pdb|2Y7Y|B Chain B, Aplysia Californica Achbp In Apo State
pdb|2Y7Y|C Chain C, Aplysia Californica Achbp In Apo State
pdb|2Y7Y|D Chain D, Aplysia Californica Achbp In Apo State
pdb|2Y7Y|E Chain E, Aplysia Californica Achbp In Apo State
pdb|2Y54|A Chain A, Fragment Growing Induces Conformational Changes In
Acetylcholine- Binding Protein: A Structural And
Thermodynamic Analysis - (Fragment 1)
pdb|2Y54|B Chain B, Fragment Growing Induces Conformational Changes In
Acetylcholine- Binding Protein: A Structural And
Thermodynamic Analysis - (Fragment 1)
pdb|2Y54|C Chain C, Fragment Growing Induces Conformational Changes In
Acetylcholine- Binding Protein: A Structural And
Thermodynamic Analysis - (Fragment 1)
pdb|2Y54|D Chain D, Fragment Growing Induces Conformational Changes In
Acetylcholine- Binding Protein: A Structural And
Thermodynamic Analysis - (Fragment 1)
pdb|2Y54|E Chain E, Fragment Growing Induces Conformational Changes In
Acetylcholine- Binding Protein: A Structural And
Thermodynamic Analysis - (Fragment 1)
pdb|2Y56|A Chain A, Fragment Growing Induces Conformational Changes In
Acetylcholine-Binding Protein: A Structural And
Thermodynamic Analysis - (Compound 3)
pdb|2Y56|B Chain B, Fragment Growing Induces Conformational Changes In
Acetylcholine-Binding Protein: A Structural And
Thermodynamic Analysis - (Compound 3)
pdb|2Y56|C Chain C, Fragment Growing Induces Conformational Changes In
Acetylcholine-Binding Protein: A Structural And
Thermodynamic Analysis - (Compound 3)
pdb|2Y56|D Chain D, Fragment Growing Induces Conformational Changes In
Acetylcholine-Binding Protein: A Structural And
Thermodynamic Analysis - (Compound 3)
pdb|2Y56|E Chain E, Fragment Growing Induces Conformational Changes In
Acetylcholine-Binding Protein: A Structural And
Thermodynamic Analysis - (Compound 3)
pdb|2Y57|A Chain A, Fragment Growing Induces Conformational Changes In
Acetylcholine-Binding Protein: A Structural And
Thermodynamic Analysis - (Compound 4)
pdb|2Y57|B Chain B, Fragment Growing Induces Conformational Changes In
Acetylcholine-Binding Protein: A Structural And
Thermodynamic Analysis - (Compound 4)
pdb|2Y57|C Chain C, Fragment Growing Induces Conformational Changes In
Acetylcholine-Binding Protein: A Structural And
Thermodynamic Analysis - (Compound 4)
pdb|2Y57|D Chain D, Fragment Growing Induces Conformational Changes In
Acetylcholine-Binding Protein: A Structural And
Thermodynamic Analysis - (Compound 4)
pdb|2Y57|E Chain E, Fragment Growing Induces Conformational Changes In
Acetylcholine-Binding Protein: A Structural And
Thermodynamic Analysis - (Compound 4)
pdb|2Y58|A Chain A, Fragment Growing Induces Conformational Changes In
Acetylcholine-Binding Protein: A Structural And
Thermodynamic Analysis - (Compound 6)
pdb|2Y58|B Chain B, Fragment Growing Induces Conformational Changes In
Acetylcholine-Binding Protein: A Structural And
Thermodynamic Analysis - (Compound 6)
pdb|2Y58|C Chain C, Fragment Growing Induces Conformational Changes In
Acetylcholine-Binding Protein: A Structural And
Thermodynamic Analysis - (Compound 6)
pdb|2Y58|D Chain D, Fragment Growing Induces Conformational Changes In
Acetylcholine-Binding Protein: A Structural And
Thermodynamic Analysis - (Compound 6)
pdb|2Y58|E Chain E, Fragment Growing Induces Conformational Changes In
Acetylcholine-Binding Protein: A Structural And
Thermodynamic Analysis - (Compound 6)
pdb|4AFO|A Chain A, Aplysia Californica Achbp In Complex With Cytisine
pdb|4AFO|B Chain B, Aplysia Californica Achbp In Complex With Cytisine
pdb|4AFO|C Chain C, Aplysia Californica Achbp In Complex With Cytisine
pdb|4AFO|D Chain D, Aplysia Californica Achbp In Complex With Cytisine
pdb|4AFO|E Chain E, Aplysia Californica Achbp In Complex With Cytisine
pdb|4AFT|A Chain A, Aplysia Californica Achbp In Complex With Varenicline
pdb|4AFT|B Chain B, Aplysia Californica Achbp In Complex With Varenicline
pdb|4AFT|C Chain C, Aplysia Californica Achbp In Complex With Varenicline
pdb|4AFT|D Chain D, Aplysia Californica Achbp In Complex With Varenicline
pdb|4AFT|E Chain E, Aplysia Californica Achbp In Complex With Varenicline
Length = 217
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 56/143 (39%), Gaps = 21/143 (14%)
Query: 49 AKLSGHKGAVWEVAWAHP---KFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSV 105
A L K ++ + +P K + + F I+ + ++NE + +E + +
Sbjct: 2 ANLMRLKSDLFNRSPMYPGPTKDDPLTVTLGFTLQDIVKVDSSTNE-VDLVYYEQQRWKL 60
Query: 106 NSIDWAPHELGLCLACGSSDGNISVFTARADGGW--DTSRIDQAHPVGVTSVSWAPSTAP 163
NS+ W P+E GNI+ F A W D + PV V S P A
Sbjct: 61 NSLMWDPNEY----------GNITDFRTSAADIWTPDITAYSSTRPVQVLS----PQIAV 106
Query: 164 GALVGSGFLDPVQKLCSGGCDNT 186
GS P Q+L S CD T
Sbjct: 107 VTHDGSVMFIPAQRL-SFMCDPT 128
>pdb|2W38|A Chain A, Crystal Structure Of The Pseudaminidase From Pseudomonas
Aeruginosa
Length = 438
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 33/80 (41%), Gaps = 11/80 (13%)
Query: 181 GGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASAS---EDGKV 237
GG D V KL GIW A D+ RDVA +P I +AS E G+V
Sbjct: 47 GGSDGRVVFSKLEGGIWSAPTIVAQAGGQDF-RDVAGGT---MPSGRIVAASTVYETGEV 102
Query: 238 IIWTVAREGDQWEGKVLHDF 257
++ G W +H F
Sbjct: 103 KVYVSDDSGVTW----VHKF 118
>pdb|3H6J|A Chain A, Crystal Structure Of A Putative Neuraminidase From
Pseudomonas Aeruginosa
Length = 438
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 33/80 (41%), Gaps = 11/80 (13%)
Query: 181 GGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASAS---EDGKV 237
GG D V KL GIW A D+ RDVA +P I +AS E G+V
Sbjct: 47 GGSDGRVVFSKLEGGIWSAPTIVAQAGGQDF-RDVAGGT---MPSGRIVAASTVYETGEV 102
Query: 238 IIWTVAREGDQWEGKVLHDF 257
++ G W +H F
Sbjct: 103 KVYVSDDSGVTW----VHKF 118
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,431,695
Number of Sequences: 62578
Number of extensions: 451261
Number of successful extensions: 1610
Number of sequences better than 100.0: 114
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 81
Number of HSP's that attempted gapping in prelim test: 1051
Number of HSP's gapped (non-prelim): 312
length of query: 288
length of database: 14,973,337
effective HSP length: 98
effective length of query: 190
effective length of database: 8,840,693
effective search space: 1679731670
effective search space used: 1679731670
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)