Query 036510
Match_columns 288
No_of_seqs 122 out of 1917
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 02:47:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036510.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036510hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1332 Vesicle coat complex C 100.0 3.7E-50 8E-55 312.8 21.1 284 1-287 1-285 (299)
2 KOG0271 Notchless-like WD40 re 100.0 5.3E-46 1.1E-50 305.7 23.6 252 6-287 110-396 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 6E-45 1.3E-49 302.7 17.5 245 6-286 212-458 (459)
4 KOG0271 Notchless-like WD40 re 100.0 5.5E-43 1.2E-47 288.0 22.4 252 3-286 149-479 (480)
5 KOG0272 U4/U6 small nuclear ri 100.0 4.3E-43 9.2E-48 291.6 19.4 243 9-286 173-416 (459)
6 KOG0279 G protein beta subunit 100.0 5.6E-39 1.2E-43 254.6 27.1 251 3-288 55-313 (315)
7 KOG0263 Transcription initiati 100.0 5.7E-40 1.2E-44 291.4 23.1 244 9-287 376-648 (707)
8 KOG0645 WD40 repeat protein [G 100.0 3E-37 6.5E-42 243.9 30.0 248 6-287 9-260 (312)
9 KOG0279 G protein beta subunit 100.0 2.6E-37 5.6E-42 245.2 27.7 250 4-288 8-262 (315)
10 KOG0315 G-protein beta subunit 100.0 6.5E-37 1.4E-41 239.5 25.1 248 10-288 39-288 (311)
11 KOG0645 WD40 repeat protein [G 100.0 2.9E-36 6.2E-41 238.4 28.6 249 8-288 58-311 (312)
12 KOG0265 U5 snRNP-specific prot 100.0 5.2E-37 1.1E-41 245.7 23.0 253 1-287 37-295 (338)
13 KOG0263 Transcription initiati 100.0 4.2E-37 9.1E-42 273.2 23.4 207 5-245 445-651 (707)
14 KOG0273 Beta-transducin family 100.0 1.5E-36 3.3E-41 255.7 25.3 249 11-288 235-523 (524)
15 KOG0286 G-protein beta subunit 100.0 8.6E-36 1.9E-40 238.0 27.0 253 1-287 45-302 (343)
16 KOG0284 Polyadenylation factor 100.0 9.7E-38 2.1E-42 258.8 15.5 246 6-287 133-379 (464)
17 KOG0295 WD40 repeat-containing 100.0 2.5E-36 5.4E-41 247.2 21.0 259 7-287 146-405 (406)
18 KOG0277 Peroxisomal targeting 100.0 7.4E-36 1.6E-40 234.2 18.5 247 10-286 59-307 (311)
19 KOG0319 WD40-repeat-containing 100.0 2.5E-35 5.4E-40 260.0 22.8 253 4-287 358-618 (775)
20 KOG0281 Beta-TrCP (transducin 100.0 2E-36 4.2E-41 246.9 13.9 240 5-287 231-476 (499)
21 KOG0273 Beta-transducin family 100.0 6.3E-35 1.4E-39 246.0 23.1 250 9-287 176-481 (524)
22 KOG0285 Pleiotropic regulator 100.0 2.8E-34 6E-39 235.0 25.4 251 6-286 146-437 (460)
23 KOG0313 Microtubule binding pr 100.0 8.9E-35 1.9E-39 239.3 22.1 251 7-288 101-376 (423)
24 KOG0643 Translation initiation 100.0 1.1E-33 2.3E-38 223.5 25.3 256 1-287 1-316 (327)
25 KOG0266 WD40 repeat-containing 100.0 1.9E-33 4.2E-38 252.7 30.0 246 10-287 158-408 (456)
26 KOG2445 Nuclear pore complex c 100.0 5.4E-33 1.2E-37 223.4 28.3 269 6-286 8-316 (361)
27 KOG0266 WD40 repeat-containing 100.0 2.5E-33 5.3E-38 252.0 28.3 251 6-287 198-453 (456)
28 KOG0284 Polyadenylation factor 100.0 3.8E-35 8.2E-40 243.5 15.0 239 11-287 96-336 (464)
29 KOG0286 G-protein beta subunit 100.0 8.5E-33 1.8E-37 220.9 27.2 243 11-286 97-343 (343)
30 KOG0318 WD40 repeat stress pro 100.0 1.1E-32 2.5E-37 235.2 29.7 271 2-288 178-560 (603)
31 KOG0295 WD40 repeat-containing 100.0 4.8E-34 1E-38 233.9 19.7 250 6-287 103-363 (406)
32 KOG0281 Beta-TrCP (transducin 100.0 3.8E-35 8.2E-40 239.4 11.7 232 10-287 196-427 (499)
33 KOG0283 WD40 repeat-containing 100.0 3.7E-33 7.9E-38 249.9 24.5 251 4-287 260-575 (712)
34 KOG0264 Nucleosome remodeling 100.0 3E-33 6.5E-38 235.0 22.3 258 9-288 122-404 (422)
35 KOG0282 mRNA splicing factor [ 100.0 2.5E-34 5.4E-39 243.1 15.3 250 6-287 209-461 (503)
36 KOG0316 Conserved WD40 repeat- 100.0 1.3E-32 2.9E-37 213.8 22.7 243 6-287 12-256 (307)
37 PLN00181 protein SPA1-RELATED; 100.0 8.7E-32 1.9E-36 257.9 33.7 249 8-287 480-737 (793)
38 KOG0291 WD40-repeat-containing 100.0 3.3E-32 7.2E-37 240.9 28.0 246 8-287 347-611 (893)
39 KOG0291 WD40-repeat-containing 100.0 6.2E-32 1.4E-36 239.1 29.1 241 11-287 307-549 (893)
40 KOG0313 Microtubule binding pr 100.0 4E-32 8.7E-37 223.7 22.2 253 4-286 137-416 (423)
41 PLN00181 protein SPA1-RELATED; 100.0 4.5E-31 9.8E-36 252.9 32.9 249 10-287 531-792 (793)
42 KOG0278 Serine/threonine kinas 100.0 1.9E-33 4.2E-38 220.3 13.3 253 2-287 5-296 (334)
43 cd00200 WD40 WD40 domain, foun 100.0 1.4E-30 3.1E-35 218.1 31.6 245 6-287 4-248 (289)
44 KOG0293 WD40 repeat-containing 100.0 4.7E-32 1E-36 225.5 21.2 261 5-287 218-512 (519)
45 KOG0315 G-protein beta subunit 100.0 1.4E-30 3E-35 204.1 24.8 232 23-287 10-244 (311)
46 KOG0276 Vesicle coat complex C 100.0 3.4E-31 7.3E-36 230.3 23.4 247 7-286 9-255 (794)
47 KOG0319 WD40-repeat-containing 100.0 3.2E-31 7E-36 234.1 23.6 252 5-287 317-576 (775)
48 KOG0265 U5 snRNP-specific prot 100.0 5.5E-31 1.2E-35 211.2 22.4 246 6-284 85-334 (338)
49 KOG0292 Vesicle coat complex C 100.0 9.2E-31 2E-35 235.2 26.3 247 7-287 47-320 (1202)
50 cd00200 WD40 WD40 domain, foun 100.0 7.3E-30 1.6E-34 213.8 30.5 244 6-286 46-289 (289)
51 KOG0318 WD40 repeat stress pro 100.0 3.4E-30 7.3E-35 220.1 27.9 249 6-287 54-349 (603)
52 KOG0292 Vesicle coat complex C 100.0 2.2E-31 4.7E-36 239.2 21.1 247 10-287 8-279 (1202)
53 KOG0296 Angio-associated migra 100.0 2.8E-30 6.2E-35 211.9 24.4 250 6-287 59-355 (399)
54 KOG0277 Peroxisomal targeting 100.0 1.7E-30 3.6E-35 204.1 21.0 243 15-287 12-264 (311)
55 KOG0305 Anaphase promoting com 100.0 1.6E-30 3.5E-35 227.2 23.1 244 7-287 213-460 (484)
56 KOG0268 Sof1-like rRNA process 100.0 1.5E-31 3.3E-36 219.2 15.1 245 7-286 62-343 (433)
57 PTZ00421 coronin; Provisional 100.0 2.1E-29 4.5E-34 226.5 30.2 248 11-287 20-289 (493)
58 PTZ00420 coronin; Provisional 100.0 5.8E-29 1.3E-33 225.1 31.9 229 29-287 50-292 (568)
59 KOG0310 Conserved WD40 repeat- 100.0 6.3E-30 1.4E-34 216.7 23.1 245 2-284 59-305 (487)
60 KOG1407 WD40 repeat protein [F 100.0 1.1E-29 2.4E-34 200.2 21.2 245 7-286 16-309 (313)
61 KOG0772 Uncharacterized conser 100.0 7.7E-30 1.7E-34 217.6 19.8 253 6-285 162-484 (641)
62 KOG0276 Vesicle coat complex C 100.0 2.2E-29 4.8E-34 219.0 22.9 241 11-284 55-295 (794)
63 KOG0640 mRNA cleavage stimulat 100.0 8.3E-30 1.8E-34 205.5 18.8 255 6-287 107-425 (430)
64 KOG0641 WD40 repeat protein [G 100.0 4.8E-28 1E-32 187.7 27.3 252 7-287 85-348 (350)
65 KOG0306 WD40-repeat-containing 100.0 4.9E-29 1.1E-33 220.7 23.5 246 8-287 370-663 (888)
66 PTZ00421 coronin; Provisional 100.0 3.9E-28 8.4E-33 218.3 29.7 232 6-269 70-314 (493)
67 KOG0294 WD40 repeat-containing 100.0 1.3E-28 2.9E-33 198.8 23.8 243 4-287 36-280 (362)
68 KOG0274 Cdc4 and related F-box 100.0 1.1E-28 2.3E-33 222.6 25.7 237 7-288 245-482 (537)
69 KOG0264 Nucleosome remodeling 100.0 2.3E-29 4.9E-34 211.7 18.9 220 3-243 169-404 (422)
70 KOG1446 Histone H3 (Lys4) meth 100.0 3.4E-27 7.3E-32 190.8 30.0 253 1-288 4-262 (311)
71 KOG0973 Histone transcription 100.0 2.6E-28 5.5E-33 224.1 26.3 255 9-287 11-354 (942)
72 KOG0647 mRNA export protein (c 100.0 3.6E-28 7.9E-33 195.2 23.8 246 8-286 24-279 (347)
73 KOG0274 Cdc4 and related F-box 100.0 4.1E-28 8.9E-33 218.8 24.5 237 6-287 202-440 (537)
74 KOG0300 WD40 repeat-containing 100.0 1.3E-28 2.9E-33 199.2 18.8 248 6-287 143-427 (481)
75 PTZ00420 coronin; Provisional 100.0 1.8E-26 3.8E-31 209.0 29.7 234 5-271 68-319 (568)
76 KOG0316 Conserved WD40 repeat- 100.0 4E-27 8.7E-32 183.4 21.4 242 5-286 53-297 (307)
77 KOG0308 Conserved WD40 repeat- 100.0 3.5E-28 7.5E-33 212.4 17.2 241 16-286 29-283 (735)
78 KOG1332 Vesicle coat complex C 100.0 1.4E-27 3.1E-32 186.7 17.5 221 6-244 51-287 (299)
79 KOG0301 Phospholipase A2-activ 100.0 2.2E-27 4.7E-32 208.8 20.3 239 6-287 9-248 (745)
80 KOG0299 U3 snoRNP-associated p 100.0 9.6E-27 2.1E-31 196.2 22.4 237 8-278 199-445 (479)
81 KOG0288 WD40 repeat protein Ti 100.0 1.6E-28 3.5E-33 204.4 11.3 244 7-287 171-416 (459)
82 KOG0285 Pleiotropic regulator 100.0 1.9E-27 4E-32 195.1 17.3 205 46-286 142-346 (460)
83 KOG0302 Ribosome Assembly prot 100.0 5.3E-27 1.2E-31 193.5 19.2 216 52-288 148-378 (440)
84 KOG0288 WD40 repeat protein Ti 100.0 2.7E-27 5.8E-32 197.2 17.5 240 6-286 214-459 (459)
85 KOG0296 Angio-associated migra 100.0 7.4E-26 1.6E-30 186.0 25.7 258 6-287 101-397 (399)
86 KOG0282 mRNA splicing factor [ 100.0 2.1E-27 4.4E-32 201.3 16.5 248 6-286 253-503 (503)
87 KOG0275 Conserved WD40 repeat- 100.0 5.6E-27 1.2E-31 190.4 16.7 246 6-286 208-465 (508)
88 KOG0299 U3 snoRNP-associated p 99.9 3.5E-26 7.6E-31 192.8 20.6 247 8-288 139-410 (479)
89 KOG0310 Conserved WD40 repeat- 99.9 2.5E-26 5.4E-31 195.0 19.8 241 11-287 26-267 (487)
90 KOG0289 mRNA splicing factor [ 99.9 1.3E-25 2.7E-30 188.3 23.3 241 12-286 220-460 (506)
91 KOG0270 WD40 repeat-containing 99.9 4.3E-26 9.4E-31 191.5 20.2 234 22-287 191-448 (463)
92 KOG0302 Ribosome Assembly prot 99.9 8.6E-26 1.9E-30 186.4 21.2 255 9-286 149-436 (440)
93 KOG0269 WD40 repeat-containing 99.9 7.4E-27 1.6E-31 207.6 15.0 240 15-283 91-335 (839)
94 KOG1036 Mitotic spindle checkp 99.9 2.5E-25 5.5E-30 179.4 21.7 245 1-278 1-294 (323)
95 KOG0289 mRNA splicing factor [ 99.9 5E-25 1.1E-29 184.8 24.0 248 6-287 256-505 (506)
96 KOG0267 Microtubule severing p 99.9 2.7E-27 5.8E-32 209.1 10.1 236 7-279 24-259 (825)
97 KOG0306 WD40-repeat-containing 99.9 5.3E-25 1.2E-29 195.4 23.6 198 57-286 414-620 (888)
98 KOG0269 WD40 repeat-containing 99.9 1.5E-25 3.3E-30 199.4 18.1 248 11-288 39-296 (839)
99 KOG0301 Phospholipase A2-activ 99.9 6.8E-25 1.5E-29 193.1 21.2 232 8-287 54-287 (745)
100 KOG0647 mRNA export protein (c 99.9 3.8E-24 8.2E-29 172.2 23.2 241 5-278 66-313 (347)
101 KOG0641 WD40 repeat protein [G 99.9 3.4E-23 7.4E-28 160.8 27.4 245 11-287 32-302 (350)
102 KOG0308 Conserved WD40 repeat- 99.9 2.2E-25 4.8E-30 195.0 16.6 250 7-287 69-326 (735)
103 KOG0300 WD40 repeat-containing 99.9 4.6E-25 1E-29 178.8 16.7 236 24-287 125-385 (481)
104 KOG0640 mRNA cleavage stimulat 99.9 3.8E-25 8.2E-30 178.7 16.1 214 48-287 105-334 (430)
105 KOG4283 Transcription-coupled 99.9 5.8E-24 1.3E-28 170.7 21.1 216 5-245 37-278 (397)
106 KOG0283 WD40 repeat-containing 99.9 2E-24 4.2E-29 194.1 20.5 208 3-243 361-576 (712)
107 KOG1446 Histone H3 (Lys4) meth 99.9 7.8E-23 1.7E-27 165.6 26.0 238 10-285 55-300 (311)
108 KOG0305 Anaphase promoting com 99.9 1.6E-23 3.4E-28 183.5 22.2 222 26-287 190-418 (484)
109 KOG0293 WD40 repeat-containing 99.9 7E-24 1.5E-28 177.0 18.2 208 48-288 217-425 (519)
110 KOG0643 Translation initiation 99.9 3.7E-23 8E-28 164.0 20.9 207 50-287 5-219 (327)
111 KOG0278 Serine/threonine kinas 99.9 6.7E-24 1.4E-28 166.8 15.8 201 9-245 98-299 (334)
112 KOG1407 WD40 repeat protein [F 99.9 1.2E-23 2.6E-28 166.2 17.2 207 49-284 14-257 (313)
113 KOG2445 Nuclear pore complex c 99.9 8.9E-23 1.9E-27 164.7 21.6 222 9-245 57-320 (361)
114 KOG1274 WD40 repeat protein [G 99.9 2.3E-22 5E-27 182.2 26.2 246 9-287 11-261 (933)
115 KOG1063 RNA polymerase II elon 99.9 1E-22 2.3E-27 179.5 22.9 270 6-287 262-647 (764)
116 KOG2096 WD40 repeat protein [G 99.9 1.3E-22 2.8E-27 164.6 21.0 250 6-286 81-400 (420)
117 KOG0639 Transducin-like enhanc 99.9 1.1E-23 2.3E-28 179.8 15.6 237 11-287 465-703 (705)
118 KOG0646 WD40 repeat protein [G 99.9 7.4E-23 1.6E-27 173.2 20.0 235 11-274 81-335 (476)
119 KOG1408 WD40 repeat protein [F 99.9 6.1E-23 1.3E-27 181.6 19.5 248 10-287 458-712 (1080)
120 KOG4283 Transcription-coupled 99.9 4.1E-23 9E-28 165.9 16.8 212 52-287 40-275 (397)
121 KOG0973 Histone transcription 99.9 1.5E-22 3.3E-27 186.4 22.1 221 8-245 66-357 (942)
122 KOG0275 Conserved WD40 repeat- 99.9 1.9E-23 4.2E-28 169.8 14.2 242 9-286 261-507 (508)
123 KOG1007 WD repeat protein TSSC 99.9 2.8E-22 6.1E-27 160.6 20.2 255 5-284 57-357 (370)
124 KOG0270 WD40 repeat-containing 99.9 8.4E-23 1.8E-27 171.9 18.0 212 7-245 239-451 (463)
125 KOG0268 Sof1-like rRNA process 99.9 1.2E-23 2.5E-28 173.1 12.2 210 46-287 57-301 (433)
126 KOG0321 WD40 repeat-containing 99.9 2.5E-22 5.5E-27 175.7 20.8 255 7-287 96-390 (720)
127 KOG0772 Uncharacterized conser 99.9 1.3E-22 2.9E-27 173.6 17.7 219 48-288 160-394 (641)
128 KOG0639 Transducin-like enhanc 99.9 2.2E-22 4.9E-27 171.8 17.0 244 8-287 416-662 (705)
129 KOG0267 Microtubule severing p 99.9 6.1E-24 1.3E-28 188.0 7.4 222 24-288 5-226 (825)
130 KOG1063 RNA polymerase II elon 99.9 5.8E-21 1.3E-25 168.5 24.7 257 6-286 49-389 (764)
131 KOG0307 Vesicle coat complex C 99.9 1.3E-22 2.8E-27 187.7 13.4 245 12-287 65-326 (1049)
132 KOG1587 Cytoplasmic dynein int 99.9 1.1E-20 2.3E-25 169.9 24.1 255 10-287 241-515 (555)
133 KOG4328 WD40 protein [Function 99.9 4.8E-21 1.1E-25 161.9 19.7 256 8-286 183-448 (498)
134 KOG0307 Vesicle coat complex C 99.9 2.2E-22 4.7E-27 186.2 11.6 215 7-245 112-329 (1049)
135 KOG0646 WD40 repeat protein [G 99.9 1.4E-20 2.9E-25 159.5 21.2 234 24-287 51-306 (476)
136 KOG1408 WD40 repeat protein [F 99.9 1.8E-20 3.8E-25 166.2 22.6 253 16-287 329-670 (1080)
137 KOG2096 WD40 repeat protein [G 99.9 1.1E-20 2.4E-25 153.4 18.8 213 48-287 79-307 (420)
138 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 5.6E-19 1.2E-23 150.4 28.6 235 13-288 32-279 (300)
139 KOG1034 Transcriptional repres 99.9 1.6E-20 3.4E-25 153.0 17.8 263 9-287 87-382 (385)
140 KOG1539 WD repeat protein [Gen 99.9 9.4E-20 2E-24 163.9 24.3 249 9-286 241-646 (910)
141 KOG1538 Uncharacterized conser 99.9 1.5E-19 3.1E-24 159.4 24.9 242 13-287 14-292 (1081)
142 KOG0650 WD40 repeat nucleolar 99.9 1E-19 2.2E-24 158.5 23.5 264 6-285 395-732 (733)
143 KOG0294 WD40 repeat-containing 99.9 4.4E-20 9.5E-25 149.7 19.8 203 7-245 79-283 (362)
144 KOG4328 WD40 protein [Function 99.9 2.7E-20 5.8E-25 157.5 18.4 218 48-287 179-398 (498)
145 KOG4378 Nuclear protein COP1 [ 99.9 2.7E-20 5.8E-25 159.0 18.2 243 12-288 35-280 (673)
146 KOG1273 WD40 repeat protein [G 99.9 7.4E-20 1.6E-24 148.5 19.8 242 14-286 26-278 (405)
147 KOG0290 Conserved WD40 repeat- 99.9 1.3E-19 2.9E-24 145.5 20.9 254 8-286 93-363 (364)
148 KOG1034 Transcriptional repres 99.9 4.4E-20 9.5E-25 150.5 18.3 258 6-287 33-336 (385)
149 KOG2048 WD40 repeat protein [G 99.9 1.4E-18 3E-23 153.3 27.9 243 12-286 26-273 (691)
150 KOG1445 Tumor-specific antigen 99.8 3.7E-20 8.1E-25 162.3 16.4 105 176-286 641-748 (1012)
151 KOG2055 WD40 repeat protein [G 99.8 7.3E-19 1.6E-23 149.0 23.5 246 11-287 213-511 (514)
152 KOG0322 G-protein beta subunit 99.8 1.7E-19 3.7E-24 143.1 16.8 257 3-287 6-322 (323)
153 KOG1274 WD40 repeat protein [G 99.8 1.6E-18 3.4E-23 157.6 24.2 237 10-284 55-296 (933)
154 KOG2106 Uncharacterized conser 99.8 7.4E-18 1.6E-22 144.4 26.6 241 7-286 241-519 (626)
155 KOG0321 WD40 repeat-containing 99.8 5.5E-19 1.2E-23 154.9 19.8 261 17-287 55-346 (720)
156 KOG1523 Actin-related protein 99.8 9.7E-19 2.1E-23 142.2 19.2 209 54-286 9-234 (361)
157 KOG1036 Mitotic spindle checkp 99.8 1.7E-18 3.6E-23 140.2 19.9 196 54-287 12-261 (323)
158 KOG2106 Uncharacterized conser 99.8 2.9E-18 6.3E-23 146.9 22.2 239 9-286 285-579 (626)
159 COG2319 FOG: WD40 repeat [Gene 99.8 6.2E-17 1.3E-21 142.3 31.7 249 6-287 60-313 (466)
160 KOG4378 Nuclear protein COP1 [ 99.8 6.5E-19 1.4E-23 150.6 16.8 222 15-270 83-305 (673)
161 KOG4227 WD40 repeat protein [G 99.8 2.1E-18 4.6E-23 143.8 19.4 255 6-286 51-385 (609)
162 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 3.2E-17 6.9E-22 139.6 27.1 226 23-287 1-236 (300)
163 KOG0644 Uncharacterized conser 99.8 8.7E-20 1.9E-24 164.2 11.2 255 7-286 186-466 (1113)
164 KOG2919 Guanine nucleotide-bin 99.8 6.5E-18 1.4E-22 137.7 20.4 245 14-287 52-326 (406)
165 KOG2048 WD40 repeat protein [G 99.8 2.6E-17 5.7E-22 145.3 25.4 244 8-284 65-315 (691)
166 KOG1539 WD repeat protein [Gen 99.8 3.1E-17 6.6E-22 147.9 25.4 153 13-190 161-315 (910)
167 KOG1009 Chromatin assembly com 99.8 3.1E-17 6.8E-22 137.2 22.8 262 10-284 12-368 (434)
168 KOG1007 WD repeat protein TSSC 99.8 5.2E-18 1.1E-22 136.3 17.3 230 31-286 38-287 (370)
169 KOG0303 Actin-binding protein 99.8 5.5E-18 1.2E-22 141.3 17.7 208 51-287 77-293 (472)
170 PRK11028 6-phosphogluconolacto 99.8 8.7E-16 1.9E-20 133.3 31.8 251 12-287 35-303 (330)
171 KOG1188 WD40 repeat protein [G 99.8 6.9E-18 1.5E-22 138.3 16.9 240 24-286 41-344 (376)
172 KOG0290 Conserved WD40 repeat- 99.8 2.3E-17 5.1E-22 132.7 17.9 203 9-232 148-355 (364)
173 COG2319 FOG: WD40 repeat [Gene 99.8 1.9E-15 4.1E-20 132.8 31.5 242 13-287 111-358 (466)
174 KOG1523 Actin-related protein 99.8 1E-16 2.2E-21 130.6 20.9 213 11-245 10-238 (361)
175 KOG2919 Guanine nucleotide-bin 99.8 2.8E-17 6.1E-22 134.0 17.6 233 20-280 120-362 (406)
176 KOG0303 Actin-binding protein 99.8 4E-17 8.6E-22 136.2 18.5 210 7-245 77-296 (472)
177 KOG1310 WD40 repeat protein [G 99.8 1.3E-17 2.9E-22 144.2 15.8 218 49-287 44-302 (758)
178 KOG0642 Cell-cycle nuclear pro 99.8 1.1E-17 2.5E-22 144.9 15.0 250 6-287 289-560 (577)
179 KOG1524 WD40 repeat-containing 99.8 1.3E-17 2.8E-22 144.0 15.2 207 24-284 76-282 (737)
180 KOG1009 Chromatin assembly com 99.8 3.1E-17 6.8E-22 137.2 15.9 197 56-277 14-249 (434)
181 KOG1188 WD40 repeat protein [G 99.7 1.6E-16 3.4E-21 130.4 17.7 193 70-287 41-241 (376)
182 KOG2110 Uncharacterized conser 99.7 2.2E-15 4.7E-20 125.0 24.3 233 11-287 5-247 (391)
183 KOG1334 WD40 repeat protein [G 99.7 1.9E-16 4.1E-21 135.4 15.9 264 4-286 135-422 (559)
184 KOG1273 WD40 repeat protein [G 99.7 2E-15 4.3E-20 122.9 20.7 251 3-287 57-321 (405)
185 KOG1517 Guanine nucleotide bin 99.7 2.8E-15 6.1E-20 138.5 23.7 257 7-287 1060-1332(1387)
186 KOG0649 WD40 repeat protein [G 99.7 5E-15 1.1E-19 116.7 21.2 237 12-286 11-272 (325)
187 KOG0642 Cell-cycle nuclear pro 99.7 1.1E-16 2.3E-21 139.0 13.1 212 3-244 336-562 (577)
188 KOG0771 Prolactin regulatory e 99.7 1E-15 2.2E-20 128.8 16.5 203 15-244 148-355 (398)
189 KOG0650 WD40 repeat nucleolar 99.7 2E-15 4.4E-20 132.0 18.7 221 47-285 392-677 (733)
190 KOG1517 Guanine nucleotide bin 99.7 3.3E-15 7.1E-20 138.1 20.2 250 11-286 1109-1379(1387)
191 KOG1445 Tumor-specific antigen 99.7 1E-15 2.2E-20 134.7 15.4 232 29-287 599-843 (1012)
192 PRK01742 tolB translocation pr 99.7 9.8E-15 2.1E-19 131.0 21.9 222 7-269 199-426 (429)
193 KOG1963 WD40 repeat protein [G 99.7 4.8E-14 1E-18 128.3 25.8 272 4-286 198-536 (792)
194 KOG1310 WD40 repeat protein [G 99.7 1.4E-15 3.1E-20 131.8 15.2 223 4-246 43-306 (758)
195 PRK01742 tolB translocation pr 99.7 3.5E-14 7.5E-19 127.5 22.3 213 32-286 183-399 (429)
196 KOG1587 Cytoplasmic dynein int 99.6 4.9E-14 1.1E-18 127.2 22.4 233 33-287 222-471 (555)
197 KOG2055 WD40 repeat protein [G 99.6 2.2E-14 4.8E-19 122.1 18.9 202 55-286 213-415 (514)
198 PRK11028 6-phosphogluconolacto 99.6 1.3E-12 2.8E-17 113.4 30.2 237 26-287 5-257 (330)
199 KOG1538 Uncharacterized conser 99.6 3.3E-14 7.2E-19 126.1 18.8 211 57-286 14-250 (1081)
200 KOG2111 Uncharacterized conser 99.6 1E-12 2.2E-17 107.4 22.9 238 13-287 7-255 (346)
201 KOG1963 WD40 repeat protein [G 99.6 5.3E-13 1.1E-17 121.6 23.4 238 17-286 22-320 (792)
202 KOG1354 Serine/threonine prote 99.6 4.5E-13 9.8E-18 110.5 19.4 254 12-287 26-358 (433)
203 KOG0644 Uncharacterized conser 99.6 3.9E-15 8.5E-20 134.6 7.6 208 48-287 183-425 (1113)
204 KOG0322 G-protein beta subunit 99.6 2.3E-13 4.9E-18 108.6 16.6 209 9-242 54-322 (323)
205 KOG1524 WD40 repeat-containing 99.6 4.2E-14 9.1E-19 122.5 13.2 232 9-283 12-250 (737)
206 KOG1240 Protein kinase contain 99.6 2.6E-12 5.6E-17 120.9 25.6 257 9-287 1046-1333(1431)
207 KOG0649 WD40 repeat protein [G 99.6 7.3E-13 1.6E-17 104.6 17.9 198 58-287 13-234 (325)
208 KOG0771 Prolactin regulatory e 99.5 2.7E-13 5.9E-18 114.3 15.9 203 59-287 148-353 (398)
209 KOG4227 WD40 repeat protein [G 99.5 6.7E-13 1.4E-17 111.3 16.8 227 8-244 102-388 (609)
210 PF08662 eIF2A: Eukaryotic tra 99.5 4.5E-12 9.8E-17 101.2 18.3 109 149-287 59-178 (194)
211 KOG2394 WD40 protein DMR-N9 [G 99.5 1.4E-12 2.9E-17 113.3 16.0 163 12-219 220-384 (636)
212 KOG1334 WD40 repeat protein [G 99.5 6E-13 1.3E-17 114.2 13.1 259 6-286 180-464 (559)
213 KOG2321 WD40 repeat protein [G 99.5 1.6E-11 3.4E-16 107.6 20.4 243 9-284 49-339 (703)
214 PRK05137 tolB translocation pr 99.5 1E-10 2.3E-15 105.3 26.3 205 33-279 182-397 (435)
215 KOG1272 WD40-repeat-containing 99.4 6.5E-13 1.4E-17 113.4 10.4 231 13-287 131-361 (545)
216 KOG2110 Uncharacterized conser 99.4 7.2E-10 1.6E-14 92.5 26.8 198 55-287 87-329 (391)
217 PRK02889 tolB translocation pr 99.4 1.7E-10 3.8E-15 103.5 24.9 210 33-280 176-392 (427)
218 PRK03629 tolB translocation pr 99.4 3.1E-10 6.6E-15 101.9 26.4 212 33-286 179-404 (429)
219 PF08662 eIF2A: Eukaryotic tra 99.4 4.4E-11 9.6E-16 95.5 18.3 112 102-243 59-179 (194)
220 PRK03629 tolB translocation pr 99.4 1.5E-10 3.3E-15 103.9 23.9 220 8-268 195-427 (429)
221 PF10282 Lactonase: Lactonase, 99.4 1.9E-08 4.2E-13 87.8 36.3 254 15-287 40-321 (345)
222 PRK04922 tolB translocation pr 99.4 1.6E-10 3.4E-15 104.1 23.6 212 33-286 184-409 (433)
223 KOG2139 WD40 repeat protein [G 99.4 4.2E-11 9.2E-16 99.7 17.6 190 56-278 99-300 (445)
224 KOG3881 Uncharacterized conser 99.4 1.7E-10 3.6E-15 96.9 20.5 225 11-270 105-343 (412)
225 KOG3881 Uncharacterized conser 99.4 6.8E-11 1.5E-15 99.2 17.8 247 11-287 55-319 (412)
226 KOG1240 Protein kinase contain 99.4 2.1E-10 4.5E-15 108.4 22.2 223 43-288 1036-1273(1431)
227 KOG2394 WD40 protein DMR-N9 [G 99.4 4.1E-12 8.9E-17 110.4 10.1 95 11-112 290-384 (636)
228 KOG0280 Uncharacterized conser 99.3 6.7E-11 1.5E-15 96.0 15.7 203 16-241 126-331 (339)
229 KOG1409 Uncharacterized conser 99.3 1.6E-10 3.5E-15 95.6 18.2 211 7-244 20-271 (404)
230 PRK02889 tolB translocation pr 99.3 4.8E-10 1E-14 100.7 23.0 225 8-269 192-425 (427)
231 KOG0280 Uncharacterized conser 99.3 2.2E-10 4.7E-15 93.0 18.1 240 22-286 83-331 (339)
232 KOG2111 Uncharacterized conser 99.3 8.6E-09 1.9E-13 84.7 27.1 180 33-245 75-258 (346)
233 KOG2139 WD40 repeat protein [G 99.3 6.1E-10 1.3E-14 92.9 20.6 234 11-277 98-364 (445)
234 PRK04922 tolB translocation pr 99.3 4.9E-10 1.1E-14 100.9 21.5 219 7-268 199-432 (433)
235 KOG0974 WD-repeat protein WDR6 99.3 1.2E-10 2.5E-15 108.4 17.2 185 69-287 99-287 (967)
236 TIGR02800 propeller_TolB tol-p 99.3 3.5E-09 7.6E-14 94.9 25.3 206 33-280 170-386 (417)
237 KOG1354 Serine/threonine prote 99.3 1.7E-10 3.6E-15 95.6 14.8 212 55-287 25-300 (433)
238 PRK05137 tolB translocation pr 99.3 2.7E-09 5.8E-14 96.2 23.9 218 7-268 197-432 (435)
239 KOG1272 WD40-repeat-containing 99.3 7.7E-12 1.7E-16 106.9 6.7 229 12-280 171-401 (545)
240 KOG0974 WD-repeat protein WDR6 99.3 2.1E-10 4.7E-15 106.6 16.6 197 11-244 87-289 (967)
241 COG5170 CDC55 Serine/threonine 99.3 3.4E-10 7.5E-15 92.7 15.6 253 11-285 26-364 (460)
242 KOG1064 RAVE (regulator of V-A 99.2 1.2E-10 2.5E-15 113.6 13.4 182 20-245 2217-2400(2439)
243 KOG4497 Uncharacterized conser 99.2 6.9E-10 1.5E-14 91.6 15.2 257 12-286 49-389 (447)
244 KOG4497 Uncharacterized conser 99.2 2.4E-10 5.2E-15 94.2 10.7 224 17-286 14-238 (447)
245 PRK01029 tolB translocation pr 99.1 5.3E-08 1.2E-12 87.4 24.6 222 13-270 186-426 (428)
246 KOG0309 Conserved WD40 repeat- 99.1 7.8E-10 1.7E-14 99.8 12.6 249 13-287 69-338 (1081)
247 TIGR02800 propeller_TolB tol-p 99.1 2.9E-08 6.2E-13 89.0 22.5 189 8-235 186-386 (417)
248 PRK01029 tolB translocation pr 99.1 1.1E-07 2.4E-12 85.3 24.9 220 34-287 166-402 (428)
249 KOG4547 WD40 repeat-containing 99.1 3.2E-08 6.9E-13 87.4 20.0 188 69-287 5-219 (541)
250 KOG1064 RAVE (regulator of V-A 99.1 1.3E-09 2.9E-14 106.4 12.4 187 55-287 2208-2397(2439)
251 PF02239 Cytochrom_D1: Cytochr 99.1 3.6E-07 7.9E-12 80.2 26.5 238 15-287 40-346 (369)
252 COG2706 3-carboxymuconate cycl 99.1 3.1E-06 6.7E-11 71.2 30.3 256 9-287 37-320 (346)
253 KOG2321 WD40 repeat protein [G 99.1 9.3E-09 2E-13 90.6 15.8 190 24-244 147-344 (703)
254 KOG1409 Uncharacterized conser 99.1 5.7E-09 1.2E-13 86.6 13.7 128 1-134 104-270 (404)
255 PRK00178 tolB translocation pr 99.1 2.9E-07 6.3E-12 82.9 26.1 205 34-279 180-394 (430)
256 PRK04792 tolB translocation pr 99.0 3.1E-07 6.8E-12 83.0 26.1 207 34-279 199-413 (448)
257 PRK00178 tolB translocation pr 99.0 1.5E-07 3.3E-12 84.7 23.9 222 8-269 195-428 (430)
258 KOG4547 WD40 repeat-containing 99.0 2.1E-07 4.4E-12 82.4 23.4 199 21-245 3-222 (541)
259 KOG4532 WD40-like repeat conta 99.0 1.7E-07 3.7E-12 75.6 20.8 239 16-279 72-323 (344)
260 PF10282 Lactonase: Lactonase, 99.0 4.6E-06 1E-10 72.9 31.7 210 15-245 90-324 (345)
261 KOG0309 Conserved WD40 repeat- 99.0 1.5E-09 3.2E-14 98.0 9.5 225 6-244 109-340 (1081)
262 KOG4190 Uncharacterized conser 99.0 5.1E-09 1.1E-13 92.0 12.4 255 7-284 731-1032(1034)
263 PRK04792 tolB translocation pr 99.0 4.5E-07 9.8E-12 82.0 24.5 217 10-268 216-446 (448)
264 KOG2041 WD40 repeat protein [G 99.0 4.4E-08 9.5E-13 88.6 16.5 245 6-279 9-279 (1189)
265 PLN02919 haloacid dehalogenase 98.9 1.7E-06 3.7E-11 85.6 28.4 241 15-287 571-887 (1057)
266 KOG2314 Translation initiation 98.9 6.9E-07 1.5E-11 78.8 21.3 246 16-287 215-524 (698)
267 KOG4714 Nucleoporin [Nuclear s 98.9 1.3E-08 2.9E-13 81.5 9.6 153 19-194 97-255 (319)
268 COG5170 CDC55 Serine/threonine 98.9 3.6E-08 7.9E-13 81.0 11.3 212 55-287 26-308 (460)
269 PF04762 IKI3: IKI3 family; I 98.8 6.3E-06 1.4E-10 80.3 27.7 247 11-286 120-454 (928)
270 PF02239 Cytochrom_D1: Cytochr 98.8 1.2E-05 2.5E-10 70.8 26.1 192 24-244 6-203 (369)
271 KOG3914 WD repeat protein WDR4 98.8 1.7E-07 3.8E-12 79.3 13.0 155 18-196 69-226 (390)
272 COG5354 Uncharacterized protei 98.8 9.6E-06 2.1E-10 71.1 23.8 196 58-288 176-395 (561)
273 KOG2315 Predicted translation 98.8 3.4E-06 7.5E-11 74.5 21.3 233 15-286 129-388 (566)
274 KOG3914 WD repeat protein WDR4 98.7 3.7E-07 8.1E-12 77.4 14.1 159 58-246 65-226 (390)
275 KOG4190 Uncharacterized conser 98.7 2.5E-08 5.5E-13 87.7 7.1 174 48-245 728-908 (1034)
276 PF00400 WD40: WD domain, G-be 98.7 5.6E-08 1.2E-12 56.1 6.4 38 46-85 2-39 (39)
277 PF00400 WD40: WD domain, G-be 98.7 4.8E-08 1E-12 56.4 5.7 38 200-241 2-39 (39)
278 PF15492 Nbas_N: Neuroblastoma 98.7 8.7E-05 1.9E-09 60.9 26.8 235 16-287 2-258 (282)
279 KOG4532 WD40-like repeat conta 98.7 5.1E-06 1.1E-10 67.3 17.6 151 26-196 131-285 (344)
280 KOG2315 Predicted translation 98.6 3.8E-06 8.3E-11 74.2 17.8 241 13-287 75-343 (566)
281 TIGR02658 TTQ_MADH_Hv methylam 98.6 0.00028 6E-09 61.3 28.3 237 19-288 53-330 (352)
282 KOG1645 RING-finger-containing 98.6 4.7E-06 1E-10 71.0 16.8 85 2-90 184-269 (463)
283 COG2706 3-carboxymuconate cycl 98.6 0.00025 5.5E-09 59.9 27.0 233 32-286 15-272 (346)
284 COG4946 Uncharacterized protei 98.6 0.00012 2.6E-09 64.0 25.0 124 22-161 331-455 (668)
285 KOG2695 WD40 repeat protein [G 98.6 2.1E-07 4.6E-12 77.5 7.5 123 12-136 253-378 (425)
286 KOG4714 Nucleoporin [Nuclear s 98.5 2.9E-06 6.3E-11 68.4 13.2 116 152-286 182-316 (319)
287 PF04762 IKI3: IKI3 family; I 98.5 0.00016 3.4E-09 70.8 27.7 243 11-286 75-377 (928)
288 PF15492 Nbas_N: Neuroblastoma 98.5 8.9E-05 1.9E-09 60.8 21.2 192 14-243 46-259 (282)
289 KOG2314 Translation initiation 98.5 4E-05 8.7E-10 68.0 20.0 114 151-287 447-572 (698)
290 PLN02919 haloacid dehalogenase 98.5 0.0001 2.2E-09 73.3 24.9 203 14-245 626-890 (1057)
291 KOG2041 WD40 repeat protein [G 98.4 2.1E-05 4.5E-10 71.8 17.1 254 3-285 63-334 (1189)
292 KOG2066 Vacuolar assembly/sort 98.4 1.9E-05 4.2E-10 72.7 17.0 189 12-243 40-233 (846)
293 KOG1275 PAB-dependent poly(A) 98.4 2.5E-05 5.5E-10 73.0 16.1 193 23-286 147-340 (1118)
294 COG5354 Uncharacterized protei 98.3 0.00013 2.9E-09 64.1 18.9 240 12-286 33-304 (561)
295 KOG0882 Cyclophilin-related pe 98.3 8.2E-06 1.8E-10 70.5 11.0 213 9-245 7-233 (558)
296 PRK04043 tolB translocation pr 98.3 0.0014 3E-08 58.8 25.3 183 57-279 189-388 (419)
297 PF11768 DUF3312: Protein of u 98.3 1E-05 2.2E-10 72.3 11.3 73 207-288 257-329 (545)
298 KOG1912 WD40 repeat protein [G 98.3 0.00026 5.6E-09 65.4 20.0 244 14-287 18-303 (1062)
299 KOG1008 Uncharacterized conser 98.2 7.6E-07 1.6E-11 79.9 2.8 209 12-244 57-276 (783)
300 COG4946 Uncharacterized protei 98.2 0.0018 3.8E-08 56.9 22.2 187 67-288 276-477 (668)
301 KOG1832 HIV-1 Vpr-binding prot 98.2 2.6E-06 5.7E-11 79.2 5.3 220 5-275 1095-1318(1516)
302 KOG2695 WD40 repeat protein [G 98.1 2E-05 4.4E-10 66.0 9.4 153 22-196 224-379 (425)
303 KOG0882 Cyclophilin-related pe 98.1 4.4E-05 9.5E-10 66.1 11.4 210 53-287 7-230 (558)
304 PRK04043 tolB translocation pr 98.1 0.0035 7.5E-08 56.3 24.1 190 13-242 189-397 (419)
305 KOG2066 Vacuolar assembly/sort 98.1 0.00055 1.2E-08 63.5 18.4 158 9-194 56-234 (846)
306 TIGR03300 assembly_YfgL outer 98.1 0.0032 6.9E-08 55.7 23.0 188 69-287 145-337 (377)
307 KOG1275 PAB-dependent poly(A) 98.1 5.7E-05 1.2E-09 70.7 11.8 146 21-192 185-341 (1118)
308 PF11768 DUF3312: Protein of u 98.0 0.00061 1.3E-08 61.3 17.5 74 101-195 258-331 (545)
309 KOG1008 Uncharacterized conser 98.0 5E-06 1.1E-10 74.8 2.9 207 55-287 56-274 (783)
310 KOG2114 Vacuolar assembly/sort 97.9 0.0061 1.3E-07 57.3 22.1 200 18-246 30-246 (933)
311 KOG1645 RING-finger-containing 97.9 0.00073 1.6E-08 58.0 14.8 84 48-137 186-269 (463)
312 KOG1912 WD40 repeat protein [G 97.8 0.00062 1.3E-08 63.1 13.7 167 101-284 14-182 (1062)
313 TIGR03300 assembly_YfgL outer 97.8 0.0079 1.7E-07 53.2 20.7 180 70-285 191-376 (377)
314 KOG1832 HIV-1 Vpr-binding prot 97.8 3.9E-05 8.4E-10 71.7 5.3 195 46-287 1092-1290(1516)
315 KOG1920 IkappaB kinase complex 97.6 0.011 2.4E-07 57.7 19.6 199 55-287 68-321 (1265)
316 PF08450 SGL: SMP-30/Gluconola 97.6 0.028 6.1E-07 46.5 24.4 186 14-231 42-244 (246)
317 KOG1920 IkappaB kinase complex 97.5 0.081 1.8E-06 51.9 23.7 204 11-244 68-323 (1265)
318 PF08596 Lgl_C: Lethal giant l 97.5 0.06 1.3E-06 47.9 21.2 258 13-279 3-327 (395)
319 smart00320 WD40 WD40 repeats. 97.5 0.00051 1.1E-08 37.8 5.6 38 46-85 3-40 (40)
320 smart00320 WD40 WD40 repeats. 97.5 0.00017 3.6E-09 39.9 3.5 35 5-39 6-40 (40)
321 PF14783 BBS2_Mid: Ciliary BBS 97.4 0.022 4.7E-07 40.6 14.9 102 14-129 2-109 (111)
322 PF13360 PQQ_2: PQQ-like domai 97.4 0.054 1.2E-06 44.3 21.1 178 69-288 36-230 (238)
323 PF08450 SGL: SMP-30/Gluconola 97.3 0.064 1.4E-06 44.4 30.5 225 16-277 4-244 (246)
324 KOG3617 WD40 and TPR repeat-co 97.3 0.0067 1.4E-07 57.1 13.7 118 6-135 9-132 (1416)
325 KOG2114 Vacuolar assembly/sort 97.3 0.038 8.3E-07 52.2 18.0 190 69-286 35-241 (933)
326 KOG3621 WD40 repeat-containing 97.2 0.0031 6.8E-08 57.9 9.6 103 176-286 46-152 (726)
327 PF14783 BBS2_Mid: Ciliary BBS 97.0 0.06 1.3E-06 38.3 12.7 90 176-283 16-109 (111)
328 PF08553 VID27: VID27 cytoplas 96.9 0.052 1.1E-06 52.0 15.9 147 117-286 495-645 (794)
329 PF07433 DUF1513: Protein of u 96.9 0.21 4.4E-06 42.5 21.0 160 17-196 56-250 (305)
330 KOG3621 WD40 repeat-containing 96.9 0.016 3.4E-07 53.5 11.4 121 10-135 32-155 (726)
331 TIGR02658 TTQ_MADH_Hv methylam 96.8 0.32 6.9E-06 42.5 23.1 195 16-245 109-332 (352)
332 KOG4441 Proteins containing BT 96.8 0.21 4.6E-06 46.8 18.4 227 22-286 284-544 (571)
333 PF12894 Apc4_WD40: Anaphase-p 96.8 0.0049 1.1E-07 36.8 5.0 30 258-287 11-40 (47)
334 PF04053 Coatomer_WDAD: Coatom 96.7 0.43 9.4E-06 43.2 21.3 219 11-286 32-260 (443)
335 KOG4640 Anaphase-promoting com 96.7 0.0086 1.9E-07 54.5 7.9 69 212-288 23-92 (665)
336 PHA02713 hypothetical protein; 96.7 0.13 2.8E-06 48.2 16.1 62 176-245 465-535 (557)
337 PF13360 PQQ_2: PQQ-like domai 96.5 0.35 7.6E-06 39.4 19.3 193 22-245 35-232 (238)
338 PF08553 VID27: VID27 cytoplas 96.5 0.88 1.9E-05 44.0 20.6 135 32-192 503-646 (794)
339 KOG3617 WD40 and TPR repeat-co 96.5 0.0062 1.3E-07 57.3 6.0 68 212-286 62-129 (1416)
340 KOG4640 Anaphase-promoting com 96.4 0.025 5.3E-07 51.7 9.1 93 103-219 21-115 (665)
341 PF03178 CPSF_A: CPSF A subuni 96.4 0.58 1.3E-05 40.4 23.4 134 126-287 62-201 (321)
342 PF08596 Lgl_C: Lethal giant l 96.2 0.85 1.8E-05 40.7 21.1 174 98-286 82-288 (395)
343 PRK11138 outer membrane biogen 95.9 1.2 2.5E-05 39.8 20.6 97 176-287 295-393 (394)
344 PRK11138 outer membrane biogen 95.9 1.2 2.6E-05 39.7 21.5 223 23-286 120-351 (394)
345 PF03178 CPSF_A: CPSF A subuni 95.8 1.1 2.4E-05 38.7 28.5 178 79-284 62-261 (321)
346 PHA02713 hypothetical protein; 95.5 0.29 6.2E-06 45.8 12.5 23 176-198 514-538 (557)
347 KOG2395 Protein involved in va 95.5 0.19 4.1E-06 45.3 10.4 153 116-286 346-498 (644)
348 PRK13616 lipoprotein LpqB; Pro 95.3 2.7 5.8E-05 39.7 21.5 199 56-284 350-564 (591)
349 PF07433 DUF1513: Protein of u 95.1 1.8 3.9E-05 36.9 24.2 232 15-282 8-279 (305)
350 PF12894 Apc4_WD40: Anaphase-p 95.1 0.097 2.1E-06 31.1 5.2 32 11-42 11-42 (47)
351 KOG2444 WD40 repeat protein [G 95.0 0.05 1.1E-06 43.7 4.9 104 176-288 71-177 (238)
352 KOG4441 Proteins containing BT 95.0 1.4 3.1E-05 41.3 15.4 189 22-244 332-547 (571)
353 COG0823 TolB Periplasmic compo 94.6 2.2 4.7E-05 38.5 14.9 151 101-279 191-346 (425)
354 PF12234 Rav1p_C: RAVE protein 94.5 1.6 3.5E-05 41.1 14.1 107 22-133 40-155 (631)
355 KOG2079 Vacuolar assembly/sort 94.3 0.18 3.9E-06 49.2 7.5 72 11-86 130-202 (1206)
356 PRK02888 nitrous-oxide reducta 94.2 3.5 7.6E-05 38.7 15.5 62 69-136 288-353 (635)
357 PRK13616 lipoprotein LpqB; Pro 94.2 3.3 7.1E-05 39.1 15.7 162 103-286 350-523 (591)
358 PHA02790 Kelch-like protein; P 93.8 5.5 0.00012 36.6 17.4 109 22-140 271-389 (480)
359 PF06977 SdiA-regulated: SdiA- 93.7 3.5 7.7E-05 34.2 24.6 210 50-285 16-247 (248)
360 COG0823 TolB Periplasmic compo 93.6 4.1 8.9E-05 36.8 14.7 113 13-135 194-313 (425)
361 KOG2395 Protein involved in va 93.5 0.52 1.1E-05 42.7 8.6 102 178-286 349-457 (644)
362 KOG1916 Nuclear protein, conta 93.3 0.084 1.8E-06 50.4 3.6 126 99-243 129-265 (1283)
363 PF04841 Vps16_N: Vps16, N-ter 93.3 5.9 0.00013 35.6 24.4 48 34-87 62-109 (410)
364 COG3490 Uncharacterized protei 93.3 4.4 9.5E-05 34.2 13.1 55 18-75 120-179 (366)
365 PF10313 DUF2415: Uncharacteri 93.3 0.3 6.6E-06 28.3 4.6 29 260-288 2-33 (43)
366 COG3391 Uncharacterized conser 93.3 5.7 0.00012 35.3 17.1 155 105-286 76-237 (381)
367 PF04053 Coatomer_WDAD: Coatom 93.1 6.6 0.00014 35.7 19.3 176 54-279 31-215 (443)
368 KOG1916 Nuclear protein, conta 93.0 0.18 3.9E-06 48.4 5.2 182 51-243 128-323 (1283)
369 PF10647 Gmad1: Lipoprotein Lp 93.0 4.8 0.0001 33.5 17.1 143 13-161 25-177 (253)
370 KOG2079 Vacuolar assembly/sort 92.9 0.49 1.1E-05 46.3 8.0 101 23-133 99-202 (1206)
371 PHA03098 kelch-like protein; P 92.9 8 0.00017 36.0 18.2 62 69-135 343-415 (534)
372 PF10313 DUF2415: Uncharacteri 92.9 0.42 9.1E-06 27.7 4.7 33 103-135 1-34 (43)
373 PF08728 CRT10: CRT10; InterP 92.8 2.6 5.6E-05 40.2 12.5 111 172-287 111-245 (717)
374 PF12234 Rav1p_C: RAVE protein 92.7 6 0.00013 37.4 14.6 104 116-242 41-155 (631)
375 PF10647 Gmad1: Lipoprotein Lp 92.7 5.1 0.00011 33.4 18.7 154 104-281 25-188 (253)
376 PF05694 SBP56: 56kDa selenium 92.5 4 8.6E-05 36.6 12.4 64 210-277 312-392 (461)
377 PF08728 CRT10: CRT10; InterP 92.0 12 0.00026 36.0 17.6 125 57-192 102-245 (717)
378 KOG2377 Uncharacterized conser 91.7 2.6 5.7E-05 37.7 10.3 124 7-136 62-187 (657)
379 KOG3630 Nuclear pore complex, 91.2 1.5 3.2E-05 43.5 9.0 103 178-286 117-226 (1405)
380 KOG2444 WD40 repeat protein [G 91.2 1.1 2.4E-05 36.2 6.9 65 23-89 70-134 (238)
381 PRK02888 nitrous-oxide reducta 91.0 9.5 0.00021 36.0 13.8 97 184-287 295-403 (635)
382 COG3386 Gluconolactonase [Carb 91.0 7.6 0.00016 33.4 12.4 95 12-112 163-264 (307)
383 PHA02790 Kelch-like protein; P 90.4 12 0.00027 34.4 14.2 106 22-140 318-428 (480)
384 PHA03098 kelch-like protein; P 90.0 16 0.00035 33.9 15.3 106 22-136 342-466 (534)
385 KOG4499 Ca2+-binding protein R 89.9 9.7 0.00021 31.2 11.4 101 16-122 162-273 (310)
386 TIGR03118 PEPCTERM_chp_1 conse 89.8 12 0.00025 32.0 21.3 242 15-268 26-307 (336)
387 PF06977 SdiA-regulated: SdiA- 89.7 11 0.00023 31.4 23.3 165 7-192 17-200 (248)
388 PF02897 Peptidase_S9_N: Proly 88.1 15 0.00032 32.9 12.9 82 186-278 151-246 (414)
389 PF07676 PD40: WD40-like Beta 88.1 2.4 5.3E-05 23.6 5.1 27 259-285 9-38 (39)
390 PF10168 Nup88: Nuclear pore c 87.3 29 0.00063 33.7 14.6 41 207-248 144-184 (717)
391 PF00780 CNH: CNH domain; Int 86.9 17 0.00036 30.3 17.0 139 116-280 7-158 (275)
392 KOG3630 Nuclear pore complex, 86.4 6.3 0.00014 39.4 9.6 129 123-276 121-261 (1405)
393 PF14655 RAB3GAP2_N: Rab3 GTPa 84.9 14 0.0003 33.2 10.6 48 7-56 303-350 (415)
394 PF14870 PSII_BNR: Photosynthe 84.6 25 0.00054 30.2 25.5 234 9-282 14-255 (302)
395 PF00780 CNH: CNH domain; Int 84.6 22 0.00048 29.6 25.0 148 21-195 5-167 (275)
396 KOG2377 Uncharacterized conser 84.5 31 0.00068 31.3 12.5 109 148-278 65-173 (657)
397 PF04841 Vps16_N: Vps16, N-ter 83.6 33 0.00072 30.9 21.5 29 258-286 216-244 (410)
398 COG5167 VID27 Protein involved 83.1 38 0.00083 31.2 13.1 144 116-278 480-623 (776)
399 PF15390 DUF4613: Domain of un 82.9 42 0.0009 31.5 18.8 178 56-266 20-210 (671)
400 PF15390 DUF4613: Domain of un 82.1 39 0.00085 31.6 12.2 121 9-134 54-186 (671)
401 PRK13684 Ycf48-like protein; P 81.9 34 0.00074 29.8 17.3 138 11-159 172-312 (334)
402 PF05694 SBP56: 56kDa selenium 81.6 26 0.00057 31.6 10.7 103 31-136 220-344 (461)
403 PF07995 GSDH: Glucose / Sorbo 80.9 37 0.0008 29.5 24.6 73 211-283 254-330 (331)
404 PF00930 DPPIV_N: Dipeptidyl p 80.7 38 0.00083 29.6 26.2 224 16-277 105-346 (353)
405 PF12657 TFIIIC_delta: Transcr 80.5 25 0.00054 27.3 9.8 31 57-87 87-121 (173)
406 PF01731 Arylesterase: Arylest 79.8 9.7 0.00021 25.9 6.0 28 260-287 55-83 (86)
407 PF12657 TFIIIC_delta: Transcr 79.7 17 0.00038 28.2 8.4 33 211-243 87-121 (173)
408 COG3204 Uncharacterized protei 79.0 40 0.00086 28.7 16.7 166 9-194 83-264 (316)
409 KOG1900 Nuclear pore complex, 78.8 15 0.00033 37.3 9.1 110 170-287 85-204 (1311)
410 PF11715 Nup160: Nucleoporin N 78.4 11 0.00024 35.3 8.0 29 260-288 216-248 (547)
411 COG3204 Uncharacterized protei 78.1 42 0.00091 28.6 21.1 198 52-276 82-301 (316)
412 PF10168 Nup88: Nuclear pore c 75.8 75 0.0016 31.0 12.8 79 12-91 85-183 (717)
413 COG5276 Uncharacterized conser 75.6 51 0.0011 28.2 21.0 139 56-221 87-225 (370)
414 KOG4460 Nuclear pore complex, 73.8 37 0.00081 31.4 9.5 34 211-245 167-200 (741)
415 KOG3522 Predicted guanine nucl 73.3 10 0.00022 36.7 6.1 65 208-279 625-689 (925)
416 KOG4649 PQQ (pyrrolo-quinoline 72.1 58 0.0013 27.3 10.2 97 176-286 24-121 (354)
417 PF07995 GSDH: Glucose / Sorbo 72.0 66 0.0014 27.9 11.8 111 152-278 4-133 (331)
418 PF07569 Hira: TUP1-like enhan 71.0 19 0.00041 29.3 6.7 61 225-286 22-93 (219)
419 PF06433 Me-amine-dh_H: Methyl 70.8 26 0.00056 30.5 7.6 58 32-90 266-323 (342)
420 TIGR02604 Piru_Ver_Nterm putat 70.4 76 0.0017 28.0 14.9 18 260-277 185-202 (367)
421 PF07569 Hira: TUP1-like enhan 70.0 38 0.00081 27.6 8.2 63 69-134 22-95 (219)
422 PF00930 DPPIV_N: Dipeptidyl p 66.4 90 0.002 27.3 22.2 104 20-133 1-130 (353)
423 PF14583 Pectate_lyase22: Olig 66.3 82 0.0018 28.0 9.9 70 18-90 42-113 (386)
424 PF01436 NHL: NHL repeat; Int 65.7 17 0.00036 18.6 4.1 25 261-285 4-28 (28)
425 COG5167 VID27 Protein involved 64.3 37 0.0008 31.3 7.5 98 179-286 484-589 (776)
426 COG3391 Uncharacterized conser 63.3 1.1E+02 0.0024 27.2 23.3 199 15-244 77-284 (381)
427 KOG1897 Damage-specific DNA bi 62.4 1.8E+02 0.0039 29.3 17.0 110 15-136 778-900 (1096)
428 PF12768 Rax2: Cortical protei 61.9 1E+02 0.0022 26.3 10.6 75 10-84 35-120 (281)
429 PF14655 RAB3GAP2_N: Rab3 GTPa 61.4 1.3E+02 0.0027 27.3 11.3 38 51-90 303-340 (415)
430 PF14727 PHTB1_N: PTHB1 N-term 61.3 1.3E+02 0.0028 27.3 15.8 156 68-242 36-203 (418)
431 PF12768 Rax2: Cortical protei 60.9 1E+02 0.0023 26.1 14.3 120 33-160 16-147 (281)
432 PF14727 PHTB1_N: PTHB1 N-term 60.0 1.3E+02 0.0029 27.1 18.8 156 116-286 37-202 (418)
433 PF14761 HPS3_N: Hermansky-Pud 58.6 98 0.0021 25.1 12.2 58 24-84 29-92 (215)
434 KOG4460 Nuclear pore complex, 55.1 1.8E+02 0.004 27.1 12.4 78 58-137 106-201 (741)
435 KOG2247 WD40 repeat-containing 55.1 1.2 2.7E-05 40.1 -3.1 129 17-161 40-171 (615)
436 PF10584 Proteasome_A_N: Prote 53.2 3.7 8E-05 20.3 -0.3 8 265-272 7-14 (23)
437 KOG1897 Damage-specific DNA bi 53.1 2.6E+02 0.0056 28.3 22.8 90 185-286 807-896 (1096)
438 PF14870 PSII_BNR: Photosynthe 52.3 1.5E+02 0.0033 25.4 25.6 178 75-285 120-301 (302)
439 KOG3616 Selective LIM binding 52.3 42 0.0009 32.5 6.0 32 210-245 15-46 (1636)
440 KOG2247 WD40 repeat-containing 51.8 1.8 3.9E-05 39.0 -2.6 139 69-239 46-184 (615)
441 KOG1900 Nuclear pore complex, 50.8 3.1E+02 0.0068 28.6 12.8 30 258-287 242-271 (1311)
442 KOG1896 mRNA cleavage and poly 50.5 2.7E+02 0.0059 28.9 11.3 115 11-134 1097-1213(1366)
443 TIGR02608 delta_60_rpt delta-6 49.6 29 0.00063 21.3 3.2 19 13-31 2-20 (55)
444 PF11715 Nup160: Nucleoporin N 49.0 47 0.001 31.1 6.1 36 13-50 216-255 (547)
445 KOG4649 PQQ (pyrrolo-quinoline 47.6 1.7E+02 0.0037 24.7 19.7 64 23-90 63-126 (354)
446 TIGR03606 non_repeat_PQQ dehyd 44.7 2.5E+02 0.0055 25.7 13.4 56 152-221 32-90 (454)
447 COG5308 NUP170 Nuclear pore co 44.7 1.1E+02 0.0024 30.5 7.5 27 259-287 182-208 (1263)
448 KOG4499 Ca2+-binding protein R 43.3 1.9E+02 0.0042 24.0 7.7 57 18-76 218-274 (310)
449 PF03088 Str_synth: Strictosid 42.3 80 0.0017 21.6 4.8 42 232-277 34-75 (89)
450 PF12341 DUF3639: Protein of u 41.3 53 0.0011 16.9 3.5 24 211-240 3-26 (27)
451 KOG3616 Selective LIM binding 40.4 72 0.0016 31.0 5.6 31 11-41 14-44 (1636)
452 cd00216 PQQ_DH Dehydrogenases 39.3 3.1E+02 0.0068 25.3 21.6 63 23-90 61-131 (488)
453 TIGR03548 mutarot_permut cycli 39.2 2.5E+02 0.0053 24.1 14.3 155 22-199 72-285 (323)
454 PRK10526 acyl-CoA thioesterase 37.7 1.3E+02 0.0028 25.6 6.5 57 72-130 224-284 (286)
455 cd00216 PQQ_DH Dehydrogenases 37.4 3.3E+02 0.0073 25.1 22.1 20 177-196 303-322 (488)
456 PF14269 Arylsulfotran_2: Aryl 37.1 1.9E+02 0.0042 24.7 7.5 72 13-86 145-219 (299)
457 COG5290 IkappaB kinase complex 36.9 49 0.0011 32.3 4.0 101 15-122 250-356 (1243)
458 PF13570 PQQ_3: PQQ-like domai 36.9 64 0.0014 17.8 3.2 20 269-288 20-39 (40)
459 PF02897 Peptidase_S9_N: Proly 33.4 3.5E+02 0.0075 24.1 30.8 123 5-135 116-261 (414)
460 TIGR02276 beta_rpt_yvtn 40-res 32.3 90 0.002 17.0 5.9 29 21-51 1-30 (42)
461 cd03444 Thioesterase_II_repeat 31.7 1.5E+02 0.0033 20.6 5.1 54 71-126 45-102 (104)
462 COG5276 Uncharacterized conser 30.6 3.6E+02 0.0077 23.3 24.6 110 16-136 91-201 (370)
463 PF06739 SBBP: Beta-propeller 29.6 1.1E+02 0.0023 17.0 3.8 22 12-33 13-34 (38)
464 PF11635 Med16: Mediator compl 28.1 6E+02 0.013 25.1 18.7 69 211-283 261-345 (753)
465 KOG3522 Predicted guanine nucl 27.4 2.6E+02 0.0057 27.7 7.1 147 70-243 548-697 (925)
466 PF02333 Phytase: Phytase; In 25.3 5E+02 0.011 23.3 21.8 200 22-244 67-291 (381)
467 TIGR02604 Piru_Ver_Nterm putat 24.9 4.8E+02 0.01 22.9 16.1 54 58-113 16-82 (367)
468 PF14583 Pectate_lyase22: Olig 24.4 5.2E+02 0.011 23.2 14.5 35 208-245 186-224 (386)
469 PF05096 Glu_cyclase_2: Glutam 24.1 4.4E+02 0.0095 22.2 16.6 112 12-135 45-158 (264)
470 PF08954 DUF1900: Domain of un 23.1 3.1E+02 0.0066 20.5 5.5 51 61-113 16-67 (136)
471 PF10395 Utp8: Utp8 family; I 23.0 7.1E+02 0.015 24.2 10.1 76 212-287 74-158 (670)
472 PF14157 YmzC: YmzC-like prote 22.3 2.2E+02 0.0047 18.0 4.1 29 176-204 30-58 (63)
473 TIGR03606 non_repeat_PQQ dehyd 22.1 6.2E+02 0.014 23.3 13.8 56 225-281 369-428 (454)
474 TIGR03547 muta_rot_YjhT mutatr 21.3 5.4E+02 0.012 22.2 16.9 16 79-95 168-183 (346)
475 PLN02153 epithiospecifier prot 20.5 5.6E+02 0.012 22.1 10.9 15 79-94 217-231 (341)
476 KOG2467 Glycine/serine hydroxy 20.4 83 0.0018 27.8 2.3 22 225-246 341-362 (477)
477 PRK14131 N-acetylneuraminic ac 20.1 6E+02 0.013 22.3 16.9 10 69-78 140-149 (376)
478 TIGR00189 tesB acyl-CoA thioes 20.1 3.7E+02 0.008 22.3 6.3 55 72-128 212-270 (271)
No 1
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.7e-50 Score=312.82 Aligned_cols=284 Identities=60% Similarity=1.069 Sum_probs=256.2
Q ss_pred CCCCccccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCc-eeeEEEeccccCeEEEEecCCCCCCEEEEeeCCC
Q 036510 1 MPPQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTS-QHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDG 79 (288)
Q Consensus 1 ~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~ 79 (288)
|+.+++.+.|++.|..+.++-.|++||++|.|++|+|+.+..... .++..|.||.++|+.++|.||..|.+|+|||.||
T Consensus 1 ~~~q~idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDg 80 (299)
T KOG1332|consen 1 TVMQTIDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDG 80 (299)
T ss_pred CcceehhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCc
Confidence 788999999999999999998999999999999999999865443 6789999999999999999998999999999999
Q ss_pred cEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCC
Q 036510 80 TVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAP 159 (288)
Q Consensus 80 ~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p 159 (288)
.|.||.-.++ .|.+......|...|++++|-|++.+..|++++.||+|.+.+.+..+.+...++..+|+.+|.+++|.|
T Consensus 81 kVIiWke~~g-~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswap 159 (299)
T KOG1332|consen 81 KVIIWKEENG-RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAP 159 (299)
T ss_pred eEEEEecCCC-chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecC
Confidence 9999987765 566666677899999999999999999999999999999999988766776677889999999999999
Q ss_pred CCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEE
Q 036510 160 STAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVII 239 (288)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~i 239 (288)
...++.++..+.....+.|+||+.|+.|+||+...+.+..+ +.|.+|.++|++|+|.|..+++..+|||+|.|+++.|
T Consensus 160 a~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e--~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viI 237 (299)
T KOG1332|consen 160 ASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLE--RTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVII 237 (299)
T ss_pred cCCCccccccCcccccceeeccCCccceeeeecCCcchhhh--hhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEE
Confidence 98878777777777778899999999999999988766544 3589999999999999988777899999999999999
Q ss_pred EEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510 240 WTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 240 w~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~ 287 (288)
|......++++.+++++|..+++++.||+.|+.|++++.|+.|++|++
T Consensus 238 wt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke 285 (299)
T KOG1332|consen 238 WTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKE 285 (299)
T ss_pred EEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEe
Confidence 998866677888889999999999999999999999999999999985
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.3e-46 Score=305.72 Aligned_cols=252 Identities=27% Similarity=0.471 Sum_probs=215.7
Q ss_pred cccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEee
Q 036510 6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK 85 (288)
Q Consensus 6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd 85 (288)
.+.||..+|-+++|+|+|++|+||+.|.++|+||...+ .+.++..+|..=|.+++|+|+ |..||||+.||+|++||
T Consensus 110 S~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~Te--Tp~~t~KgH~~WVlcvawsPD--gk~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 110 SIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTE--TPLFTCKGHKNWVLCVAWSPD--GKKIASGSKDGSIRLWD 185 (480)
T ss_pred ccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCC--CcceeecCCccEEEEEEECCC--cchhhccccCCeEEEec
Confidence 35699999999999999999999999999999999654 558899999999999999975 99999999999999999
Q ss_pred cCCCCceEEeEEeecCCCceeEEEeccCC---CCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCC
Q 036510 86 EGNSNEWIKDHVFEDHKSSVNSIDWAPHE---LGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTA 162 (288)
Q Consensus 86 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~---~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~ 162 (288)
..++.+. ...+.+|++.|++++|.|-. ..++||+++.||.++|||+..+. ....+.+|+.+|+|+.|--+
T Consensus 186 pktg~~~--g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~---~~~~lsgHT~~VTCvrwGG~-- 258 (480)
T KOG0271|consen 186 PKTGQQI--GRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT---CVRTLSGHTASVTCVRWGGE-- 258 (480)
T ss_pred CCCCCcc--cccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCce---EEEEeccCccceEEEEEcCC--
Confidence 9887653 45788999999999998742 35689999999999999997543 24567899999999999644
Q ss_pred CCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCC-----------CC--------
Q 036510 163 PGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNL-----------GL-------- 223 (288)
Q Consensus 163 ~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~-----------~~-------- 223 (288)
.+++|||.|++||+|+...| ++...++||..+|+.++.+-+- ..
T Consensus 259 -------------gliySgS~DrtIkvw~a~dG----~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~ 321 (480)
T KOG0271|consen 259 -------------GLIYSGSQDRTIKVWRALDG----KLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQ 321 (480)
T ss_pred -------------ceEEecCCCceEEEEEccch----hHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHH
Confidence 57999999999999998877 5778899999999999988321 00
Q ss_pred -------------CCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510 224 -------------PKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 224 -------------~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~ 287 (288)
.+..+||||+|+++.+|+.....++ .+.+.+|..-|+.+.||||++++|+||-|++|+||+.
T Consensus 322 ~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkp--i~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g 396 (480)
T KOG0271|consen 322 KKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKP--ITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDG 396 (480)
T ss_pred HHHHHHHHHhhccCcceeEEecCCceEEEecccccccc--hhhhhchhhheeeEEECCCccEEEEeecccceeeeeC
Confidence 1235999999999999998765433 3456788899999999999999999999999999983
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=6e-45 Score=302.68 Aligned_cols=245 Identities=27% Similarity=0.369 Sum_probs=216.8
Q ss_pred cccccccceEEEEEcCC--CCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEE
Q 036510 6 IETGHEDTVHDVAMDYY--GKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVII 83 (288)
Q Consensus 6 ~~~~h~~~v~~~~~s~~--g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~i 83 (288)
.+.||...|.++.|.|. +..|+||+.||++++|+++.. ..+..+.+|...|-.++|.| +|++|+|+|.|.+.++
T Consensus 212 ~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e--~~l~~l~gH~~RVs~VafHP--sG~~L~TasfD~tWRl 287 (459)
T KOG0272|consen 212 TLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE--TPLQDLEGHLARVSRVAFHP--SGKFLGTASFDSTWRL 287 (459)
T ss_pred EEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC--cchhhhhcchhhheeeeecC--CCceeeecccccchhh
Confidence 46799999999999996 568999999999999999754 56899999999999999965 4999999999999999
Q ss_pred eecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCC
Q 036510 84 WKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAP 163 (288)
Q Consensus 84 wd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~ 163 (288)
||+.++.+ .....+|...|.+++|+|| |.++++|+.|..-+|||+|++.+. ..+.+|..+|.+++|+|++
T Consensus 288 WD~~tk~E---lL~QEGHs~~v~~iaf~~D--GSL~~tGGlD~~~RvWDlRtgr~i---m~L~gH~k~I~~V~fsPNG-- 357 (459)
T KOG0272|consen 288 WDLETKSE---LLLQEGHSKGVFSIAFQPD--GSLAATGGLDSLGRVWDLRTGRCI---MFLAGHIKEILSVAFSPNG-- 357 (459)
T ss_pred cccccchh---hHhhcccccccceeEecCC--CceeeccCccchhheeecccCcEE---EEecccccceeeEeECCCc--
Confidence 99987653 2345789999999999999 678999999999999999998764 3557899999999999998
Q ss_pred CceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEee
Q 036510 164 GALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVA 243 (288)
Q Consensus 164 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~ 243 (288)
..|+|||.|++++|||++.. ..++.+-+|.+-|..|+|+|.. +++|||+|.|++++||...
T Consensus 358 ------------y~lATgs~Dnt~kVWDLR~r----~~ly~ipAH~nlVS~Vk~~p~~---g~fL~TasyD~t~kiWs~~ 418 (459)
T KOG0272|consen 358 ------------YHLATGSSDNTCKVWDLRMR----SELYTIPAHSNLVSQVKYSPQE---GYFLVTASYDNTVKIWSTR 418 (459)
T ss_pred ------------eEEeecCCCCcEEEeeeccc----ccceecccccchhhheEecccC---CeEEEEcccCcceeeecCC
Confidence 78999999999999999865 4577888999999999999964 6899999999999999865
Q ss_pred cCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510 244 REGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE 286 (288)
Q Consensus 244 ~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~ 286 (288)
.- ...+.+.+|.+.|.+++++||++.|++++.|++++||.
T Consensus 419 ~~---~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 419 TW---SPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred Cc---ccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 42 12355689999999999999999999999999999995
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.5e-43 Score=287.95 Aligned_cols=252 Identities=27% Similarity=0.388 Sum_probs=203.9
Q ss_pred CCccccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCC---CCCCEEEEeeCCC
Q 036510 3 PQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHP---KFGSILASCSFDG 79 (288)
Q Consensus 3 ~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~~~l~s~s~d~ 79 (288)
|-..+.||...|.+|+|+|||+.||||+.||+|++||-..+ .+....|.+|+.-|++++|-|- +...+|+|+|.||
T Consensus 149 p~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg-~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg 227 (480)
T KOG0271|consen 149 PLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTG-QQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDG 227 (480)
T ss_pred cceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCC-CcccccccCcccceeEEeecccccCCCccceecccCCC
Confidence 44567799999999999999999999999999999996432 2446778999999999999652 3567999999999
Q ss_pred cEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeE-----------------
Q 036510 80 TVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTS----------------- 142 (288)
Q Consensus 80 ~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~----------------- 142 (288)
+|+|||...+. ....+.+|..+|+|++|-.+ .++++|+.|++|++|+...+..+..+
T Consensus 228 ~vrIWd~~~~~---~~~~lsgHT~~VTCvrwGG~---gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~ 301 (480)
T KOG0271|consen 228 SVRIWDTKLGT---CVRTLSGHTASVTCVRWGGE---GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYV 301 (480)
T ss_pred CEEEEEccCce---EEEEeccCccceEEEEEcCC---ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhh
Confidence 99999986654 45668899999999999865 36899999999999987643211000
Q ss_pred -----------------------------------------------------------EeeccCCCCeeEEEeCCCCCC
Q 036510 143 -----------------------------------------------------------RIDQAHPVGVTSVSWAPSTAP 163 (288)
Q Consensus 143 -----------------------------------------------------------~~~~~~~~~v~~i~~~p~~~~ 163 (288)
..+.+|...|..+.|||+
T Consensus 302 LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd--- 378 (480)
T KOG0271|consen 302 LRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPD--- 378 (480)
T ss_pred hhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCC---
Confidence 012233444444444444
Q ss_pred CceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEee
Q 036510 164 GALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVA 243 (288)
Q Consensus 164 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~ 243 (288)
+++++|+|.|++||+||.++| +.+.+++||-..|.-|+|+.|. .+|||||.|.++++|+++
T Consensus 379 -----------~r~IASaSFDkSVkLW~g~tG----k~lasfRGHv~~VYqvawsaDs----RLlVS~SkDsTLKvw~V~ 439 (480)
T KOG0271|consen 379 -----------GRYIASASFDKSVKLWDGRTG----KFLASFRGHVAAVYQVAWSADS----RLLVSGSKDSTLKVWDVR 439 (480)
T ss_pred -----------ccEEEEeecccceeeeeCCCc----chhhhhhhccceeEEEEeccCc----cEEEEcCCCceEEEEEee
Confidence 489999999999999999998 4677899999999999999985 689999999999999998
Q ss_pred cCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510 244 REGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE 286 (288)
Q Consensus 244 ~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~ 286 (288)
.++. ..-+-+|...|+.+.|+|||+++++|+.|+-++||.
T Consensus 440 tkKl---~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 440 TKKL---KQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred eeee---cccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 6531 122345778899999999999999999999999996
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4.3e-43 Score=291.64 Aligned_cols=243 Identities=26% Similarity=0.399 Sum_probs=215.1
Q ss_pred ccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCC
Q 036510 9 GHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGN 88 (288)
Q Consensus 9 ~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~ 88 (288)
|-+.+|..+.|+++++.||+||.+|.+++|..+. ...++++.||+..|.++.|.|..++..++||+.||++++|++.+
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~--~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~ 250 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQ--CNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ 250 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCC--cceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC
Confidence 6678999999999999999999999999999853 36789999999999999997643477999999999999999876
Q ss_pred CCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceec
Q 036510 89 SNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVG 168 (288)
Q Consensus 89 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~ 168 (288)
.. ....+.+|...|..++|||+ |++|++++.|.+-++||+++... ....++|..+|.+|+|.|++
T Consensus 251 e~---~l~~l~gH~~RVs~VafHPs--G~~L~TasfD~tWRlWD~~tk~E---lL~QEGHs~~v~~iaf~~DG------- 315 (459)
T KOG0272|consen 251 ET---PLQDLEGHLARVSRVAFHPS--GKFLGTASFDSTWRLWDLETKSE---LLLQEGHSKGVFSIAFQPDG------- 315 (459)
T ss_pred Cc---chhhhhcchhhheeeeecCC--Cceeeecccccchhhcccccchh---hHhhcccccccceeEecCCC-------
Confidence 44 45568899999999999998 88999999999999999987643 23457999999999999998
Q ss_pred ccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCc
Q 036510 169 SGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQ 248 (288)
Q Consensus 169 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~ 248 (288)
.+++|||-|..-+|||++++ +++..+.+|...|.+|.|+|++ ..|||||.|++++|||++...
T Consensus 316 -------SL~~tGGlD~~~RvWDlRtg----r~im~L~gH~k~I~~V~fsPNG----y~lATgs~Dnt~kVWDLR~r~-- 378 (459)
T KOG0272|consen 316 -------SLAATGGLDSLGRVWDLRTG----RCIMFLAGHIKEILSVAFSPNG----YHLATGSSDNTCKVWDLRMRS-- 378 (459)
T ss_pred -------ceeeccCccchhheeecccC----cEEEEecccccceeeEeECCCc----eEEeecCCCCcEEEeeecccc--
Confidence 78999999999999999998 6788999999999999999984 789999999999999998642
Q ss_pred ccceEeeccccCeEEEEeec-CCCEEEEEeCCCcEEEeE
Q 036510 249 WEGKVLHDFKTPVYRVSWSL-TGNILAVADGNNNVTLWE 286 (288)
Q Consensus 249 ~~~~~~~~~~~~i~~~~~sp-dg~~l~s~~~d~~v~~w~ 286 (288)
+..++-.|.+-|+.|+|+| -|.+|++++.|++++||.
T Consensus 379 -~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs 416 (459)
T KOG0272|consen 379 -ELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWS 416 (459)
T ss_pred -cceecccccchhhheEecccCCeEEEEcccCcceeeec
Confidence 3455667788999999999 689999999999999996
No 6
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=5.6e-39 Score=254.63 Aligned_cols=251 Identities=22% Similarity=0.328 Sum_probs=204.1
Q ss_pred CCccccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEE
Q 036510 3 PQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVI 82 (288)
Q Consensus 3 ~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~ 82 (288)
|++.+.||+-.|..+.+++||++.+|+|.|+++|+||+..+ +..+++.||...|.+++|+++ ...++|||.|++++
T Consensus 55 ~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g--~~t~~f~GH~~dVlsva~s~d--n~qivSGSrDkTik 130 (315)
T KOG0279|consen 55 PVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATG--ESTRRFVGHTKDVLSVAFSTD--NRQIVSGSRDKTIK 130 (315)
T ss_pred eeeeeeccceEecceEEccCCceEEeccccceEEEEEecCC--cEEEEEEecCCceEEEEecCC--CceeecCCCcceee
Confidence 45678899999999999999999999999999999999654 678889999999999999865 78999999999999
Q ss_pred EeecCCCCceEEeEEeec--CCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCC
Q 036510 83 IWKEGNSNEWIKDHVFED--HKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPS 160 (288)
Q Consensus 83 iwd~~~~~~~~~~~~~~~--h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~ 160 (288)
+|+.... +..++.. |++.|.|+.|+|.+..-+++++++|+++++||+++- +......+|+.-++.+.+||+
T Consensus 131 lwnt~g~----ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~---~l~~~~~gh~~~v~t~~vSpD 203 (315)
T KOG0279|consen 131 LWNTLGV----CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNC---QLRTTFIGHSGYVNTVTVSPD 203 (315)
T ss_pred eeeeccc----EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCc---chhhccccccccEEEEEECCC
Confidence 9997543 2223332 378999999999976778999999999999999863 334455689999999999999
Q ss_pred CCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEE
Q 036510 161 TAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIW 240 (288)
Q Consensus 161 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw 240 (288)
+ .++++|+.|+.+-+||++++. .+++ .+|...|++++|+|+ .+.+.+.-+..|+||
T Consensus 204 G--------------slcasGgkdg~~~LwdL~~~k----~lys-l~a~~~v~sl~fspn-----rywL~~at~~sIkIw 259 (315)
T KOG0279|consen 204 G--------------SLCASGGKDGEAMLWDLNEGK----NLYS-LEAFDIVNSLCFSPN-----RYWLCAATATSIKIW 259 (315)
T ss_pred C--------------CEEecCCCCceEEEEEccCCc----eeEe-ccCCCeEeeEEecCC-----ceeEeeccCCceEEE
Confidence 8 789999999999999999873 3444 457788999999997 467777777789999
Q ss_pred EeecCCCcccceE-eecc-----ccCeEEEEeecCCCEEEEEeCCCcEEEeEcC
Q 036510 241 TVAREGDQWEGKV-LHDF-----KTPVYRVSWSLTGNILAVADGNNNVTLWEEA 288 (288)
Q Consensus 241 ~~~~~~~~~~~~~-~~~~-----~~~i~~~~~spdg~~l~s~~~d~~v~~w~~~ 288 (288)
|+.......+.++ ..+. .-...+++||+||+.|.+|-.|+.|++|.++
T Consensus 260 dl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 260 DLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred eccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 9976431111111 1111 1125789999999999999999999999864
No 7
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=5.7e-40 Score=291.42 Aligned_cols=244 Identities=26% Similarity=0.434 Sum_probs=211.9
Q ss_pred ccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCC-----------------------------ceeeEEEeccccCeE
Q 036510 9 GHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNT-----------------------------SQHLAKLSGHKGAVW 59 (288)
Q Consensus 9 ~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~-----------------------------~~~~~~~~~h~~~v~ 59 (288)
.....+.|+.|++|++.||.|-.|..|++|.+.... .....++.||.++|+
T Consensus 376 nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVy 455 (707)
T KOG0263|consen 376 NTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVY 455 (707)
T ss_pred EcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCcee
Confidence 456788999999999999999999999999876210 022456889999999
Q ss_pred EEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCe
Q 036510 60 EVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGW 139 (288)
Q Consensus 60 ~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~ 139 (288)
.+.|+|+ .++|+|||.|+++|+|.+.+.. ....+++|..||+.+.|+|. |.++|+++.|++-++|.....
T Consensus 456 g~sFsPd--~rfLlScSED~svRLWsl~t~s---~~V~y~GH~~PVwdV~F~P~--GyYFatas~D~tArLWs~d~~--- 525 (707)
T KOG0263|consen 456 GCSFSPD--RRFLLSCSEDSSVRLWSLDTWS---CLVIYKGHLAPVWDVQFAPR--GYYFATASHDQTARLWSTDHN--- 525 (707)
T ss_pred eeeeccc--ccceeeccCCcceeeeecccce---eEEEecCCCcceeeEEecCC--ceEEEecCCCceeeeeecccC---
Confidence 9999975 7899999999999999987644 45567899999999999997 899999999999999987653
Q ss_pred eeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecC
Q 036510 140 DTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAP 219 (288)
Q Consensus 140 ~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp 219 (288)
.+.++..+|...|.|+.|.|+. .++++||.|++|++||+.+|. ++..+.||..+|.+++|||
T Consensus 526 ~PlRifaghlsDV~cv~FHPNs--------------~Y~aTGSsD~tVRlWDv~~G~----~VRiF~GH~~~V~al~~Sp 587 (707)
T KOG0263|consen 526 KPLRIFAGHLSDVDCVSFHPNS--------------NYVATGSSDRTVRLWDVSTGN----SVRIFTGHKGPVTALAFSP 587 (707)
T ss_pred CchhhhcccccccceEEECCcc--------------cccccCCCCceEEEEEcCCCc----EEEEecCCCCceEEEEEcC
Confidence 4567778999999999999998 789999999999999999983 5677899999999999999
Q ss_pred CCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510 220 NLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 220 ~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~ 287 (288)
. +.+||+|+.|+.|++||+.... ....+.+|.+.|+++.||.||..||+|+.|++|+|||+
T Consensus 588 ~----Gr~LaSg~ed~~I~iWDl~~~~---~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~ 648 (707)
T KOG0263|consen 588 C----GRYLASGDEDGLIKIWDLANGS---LVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDL 648 (707)
T ss_pred C----CceEeecccCCcEEEEEcCCCc---chhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEc
Confidence 7 4789999999999999997532 12344677889999999999999999999999999995
No 8
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=3e-37 Score=243.95 Aligned_cols=248 Identities=31% Similarity=0.531 Sum_probs=213.6
Q ss_pred cccccccceEEEEEcCC-CCEEEEeeCCCcEEEEEeCC-CCceeeEEE-eccccCeEEEEecCCCCCCEEEEeeCCCcEE
Q 036510 6 IETGHEDTVHDVAMDYY-GKRLATASSDYSIKIIGVGN-NTSQHLAKL-SGHKGAVWEVAWAHPKFGSILASCSFDGTVI 82 (288)
Q Consensus 6 ~~~~h~~~v~~~~~s~~-g~~l~s~~~d~~i~lwd~~~-~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~ 82 (288)
.+.+|.+.+..++|+|. |..|||+|.|+.||+|+... .+..+...+ .+|+..|..++|+|. |++|+++|.|.++.
T Consensus 9 ~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~--g~~La~aSFD~t~~ 86 (312)
T KOG0645|consen 9 KLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPH--GRYLASASFDATVV 86 (312)
T ss_pred eecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCC--CcEEEEeeccceEE
Confidence 46799999999999998 89999999999999999863 334444444 479999999999875 89999999999999
Q ss_pred EeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCC
Q 036510 83 IWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTA 162 (288)
Q Consensus 83 iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~ 162 (288)
||.-. ..++....++.+|.+.|.|++|+++ +.+||+++.|+.+.||.+..+..+....+++.|+..|..+.|.|..
T Consensus 87 Iw~k~-~~efecv~~lEGHEnEVK~Vaws~s--G~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~- 162 (312)
T KOG0645|consen 87 IWKKE-DGEFECVATLEGHENEVKCVAWSAS--GNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTE- 162 (312)
T ss_pred EeecC-CCceeEEeeeeccccceeEEEEcCC--CCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCc-
Confidence 99754 4567788899999999999999998 7899999999999999998877777777889999999999999986
Q ss_pred CCceecccccCCCceeEEeecCCcEEEEEEe-CCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEE
Q 036510 163 PGALVGSGFLDPVQKLCSGGCDNTVKVWKLY-NGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWT 241 (288)
Q Consensus 163 ~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~ 241 (288)
.+|+|+|.|++||+|+-. ...+ ++.+++.+|...|.+++|+|.+ ..++++++|++++||.
T Consensus 163 -------------dlL~S~SYDnTIk~~~~~~dddW--~c~~tl~g~~~TVW~~~F~~~G----~rl~s~sdD~tv~Iw~ 223 (312)
T KOG0645|consen 163 -------------DLLFSCSYDNTIKVYRDEDDDDW--ECVQTLDGHENTVWSLAFDNIG----SRLVSCSDDGTVSIWR 223 (312)
T ss_pred -------------ceeEEeccCCeEEEEeecCCCCe--eEEEEecCccceEEEEEecCCC----ceEEEecCCcceEeee
Confidence 789999999999999987 4433 5778999999999999999974 6899999999999997
Q ss_pred eecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510 242 VAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~ 287 (288)
... .....++.+++.+.|. ...|+++++|+.|+|++.
T Consensus 224 ~~~-------~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~ 260 (312)
T KOG0645|consen 224 LYT-------DLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKE 260 (312)
T ss_pred ecc-------CcchhcccceEeeeec--ccceEeccCCCEEEEEEe
Confidence 542 1223456789999998 667899999999999974
No 9
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.6e-37 Score=245.19 Aligned_cols=250 Identities=24% Similarity=0.377 Sum_probs=208.2
Q ss_pred CccccccccceEEEEEcCCC-CEEEEeeCCCcEEEEEeCCCC---ceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCC
Q 036510 4 QKIETGHEDTVHDVAMDYYG-KRLATASSDYSIKIIGVGNNT---SQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDG 79 (288)
Q Consensus 4 ~~~~~~h~~~v~~~~~s~~g-~~l~s~~~d~~i~lwd~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~ 79 (288)
..++.+|.+.|.+++..+.+ ..|++++.|+++.+|++.... +..++.+.||...|..+.-+++ |++.+|+|.|+
T Consensus 8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~d--g~~alS~swD~ 85 (315)
T KOG0279|consen 8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSD--GNFALSASWDG 85 (315)
T ss_pred eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccC--CceEEeccccc
Confidence 34677999999999998864 789999999999999986432 4558899999999999998864 99999999999
Q ss_pred cEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEee-ccCCCCeeEEEeC
Q 036510 80 TVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRID-QAHPVGVTSVSWA 158 (288)
Q Consensus 80 ~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~v~~i~~~ 158 (288)
++++||+..+. ..+.+.+|...|.+++|+|+ ..++++|+.|++|.+|++.... ..... ..+..-|.++.|+
T Consensus 86 ~lrlWDl~~g~---~t~~f~GH~~dVlsva~s~d--n~qivSGSrDkTiklwnt~g~c---k~t~~~~~~~~WVscvrfs 157 (315)
T KOG0279|consen 86 TLRLWDLATGE---STRRFVGHTKDVLSVAFSTD--NRQIVSGSRDKTIKLWNTLGVC---KYTIHEDSHREWVSCVRFS 157 (315)
T ss_pred eEEEEEecCCc---EEEEEEecCCceEEEEecCC--CceeecCCCcceeeeeeecccE---EEEEecCCCcCcEEEEEEc
Confidence 99999998775 45668899999999999998 5679999999999999986432 22332 2347789999999
Q ss_pred CCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEE
Q 036510 159 PSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVI 238 (288)
Q Consensus 159 p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~ 238 (288)
|+... -+++++|+|+++|+||+++- +....+.||..+|+.+.+|||+ ++.++|+.|+.+.
T Consensus 158 P~~~~------------p~Ivs~s~DktvKvWnl~~~----~l~~~~~gh~~~v~t~~vSpDG----slcasGgkdg~~~ 217 (315)
T KOG0279|consen 158 PNESN------------PIIVSASWDKTVKVWNLRNC----QLRTTFIGHSGYVNTVTVSPDG----SLCASGGKDGEAM 217 (315)
T ss_pred CCCCC------------cEEEEccCCceEEEEccCCc----chhhccccccccEEEEEECCCC----CEEecCCCCceEE
Confidence 98521 46999999999999999874 4566788999999999999984 7899999999999
Q ss_pred EEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEcC
Q 036510 239 IWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEEA 288 (288)
Q Consensus 239 iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~~ 288 (288)
+||++..+. ....++...|.+++|+|+-..|+.+.+ ..|+|||.+
T Consensus 218 LwdL~~~k~----lysl~a~~~v~sl~fspnrywL~~at~-~sIkIwdl~ 262 (315)
T KOG0279|consen 218 LWDLNEGKN----LYSLEAFDIVNSLCFSPNRYWLCAATA-TSIKIWDLE 262 (315)
T ss_pred EEEccCCce----eEeccCCCeEeeEEecCCceeEeeccC-CceEEEecc
Confidence 999986532 233466678999999999999887754 569999953
No 10
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=6.5e-37 Score=239.50 Aligned_cols=248 Identities=22% Similarity=0.354 Sum_probs=204.1
Q ss_pred cccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCC
Q 036510 10 HEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNS 89 (288)
Q Consensus 10 h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~ 89 (288)
.+..|+.+.+.|+++.||++++. .||+||+......++.++.+|+..|..+.|-. +|+...|||+||++||||++..
T Consensus 39 ~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~--dgrWMyTgseDgt~kIWdlR~~ 115 (311)
T KOG0315|consen 39 PDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVTAVGFQC--DGRWMYTGSEDGTVKIWDLRSL 115 (311)
T ss_pred CccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCceEEEEEee--cCeEEEecCCCceEEEEeccCc
Confidence 36789999999999999988876 79999997655557999999999999999954 5999999999999999999874
Q ss_pred CceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecc
Q 036510 90 NEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGS 169 (288)
Q Consensus 90 ~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~ 169 (288)
. ..+.+ .|..+|+++..||+. .-|++|.++|.|++||+++......+. ..-...|.++.-.|++
T Consensus 116 ~---~qR~~-~~~spVn~vvlhpnQ--teLis~dqsg~irvWDl~~~~c~~~li--Pe~~~~i~sl~v~~dg-------- 179 (311)
T KOG0315|consen 116 S---CQRNY-QHNSPVNTVVLHPNQ--TELISGDQSGNIRVWDLGENSCTHELI--PEDDTSIQSLTVMPDG-------- 179 (311)
T ss_pred c---cchhc-cCCCCcceEEecCCc--ceEEeecCCCcEEEEEccCCccccccC--CCCCcceeeEEEcCCC--------
Confidence 4 23333 577999999999984 458899999999999998764322221 1223568888888887
Q ss_pred cccCCCceeEEeecCCcEEEEEEeCCce--eeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCC
Q 036510 170 GFLDPVQKLCSGGCDNTVKVWKLYNGIW--KMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGD 247 (288)
Q Consensus 170 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~ 247 (288)
++|+.+...|++.+|++...+. .++.+..++.|...+....|||+. ++||++|.|++++||+.+..
T Consensus 180 ------sml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~----k~lat~ssdktv~iwn~~~~-- 247 (311)
T KOG0315|consen 180 ------SMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDV----KYLATCSSDKTVKIWNTDDF-- 247 (311)
T ss_pred ------cEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCC----cEEEeecCCceEEEEecCCc--
Confidence 7888888899999999976533 345566788999999999999984 78999999999999998753
Q ss_pred cccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEcC
Q 036510 248 QWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEEA 288 (288)
Q Consensus 248 ~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~~ 288 (288)
......+.+++.++..++||.||++|++|+.|+.+|+|+++
T Consensus 248 ~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~ 288 (311)
T KOG0315|consen 248 FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLS 288 (311)
T ss_pred eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccc
Confidence 12234567888999999999999999999999999999964
No 11
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.9e-36 Score=238.40 Aligned_cols=249 Identities=29% Similarity=0.459 Sum_probs=212.8
Q ss_pred cccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecC
Q 036510 8 TGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEG 87 (288)
Q Consensus 8 ~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~ 87 (288)
.+|+..|.+++|+|.|++|++||.|.++-||.-.....+++.+|.||...|.+++|+.+ |.+||+||.|++|=||.+.
T Consensus 58 ~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~s--G~~LATCSRDKSVWiWe~d 135 (312)
T KOG0645|consen 58 DGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSAS--GNYLATCSRDKSVWIWEID 135 (312)
T ss_pred ccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCC--CCEEEEeeCCCeEEEEEec
Confidence 47999999999999999999999999999997655678899999999999999999965 9999999999999999998
Q ss_pred CCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCcee
Q 036510 88 NSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALV 167 (288)
Q Consensus 88 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~ 167 (288)
...++.....+.+|...|..+.|||. ..+|++++.|++|++|.-..+..|.....+.+|...|.+++|+|.+
T Consensus 136 eddEfec~aVL~~HtqDVK~V~WHPt--~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G------ 207 (312)
T KOG0645|consen 136 EDDEFECIAVLQEHTQDVKHVIWHPT--EDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIG------ 207 (312)
T ss_pred CCCcEEEEeeeccccccccEEEEcCC--cceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCC------
Confidence 77788888889999999999999997 4689999999999999876566788888889999999999999987
Q ss_pred cccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCC-
Q 036510 168 GSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREG- 246 (288)
Q Consensus 168 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~- 246 (288)
..|++++.|++++||...... -..|+..+..|.|. + ..|+|++.|+.|++|......
T Consensus 208 --------~rl~s~sdD~tv~Iw~~~~~~--------~~~~sr~~Y~v~W~-~-----~~IaS~ggD~~i~lf~~s~~~d 265 (312)
T KOG0645|consen 208 --------SRLVSCSDDGTVSIWRLYTDL--------SGMHSRALYDVPWD-N-----GVIASGGGDDAIRLFKESDSPD 265 (312)
T ss_pred --------ceEEEecCCcceEeeeeccCc--------chhcccceEeeeec-c-----cceEeccCCCEEEEEEecCCCC
Confidence 789999999999999876431 14577789999998 4 369999999999999876431
Q ss_pred Ccccce---EeeccccCeEEEEeecC-CCEEEEEeCCCcEEEeEcC
Q 036510 247 DQWEGK---VLHDFKTPVYRVSWSLT-GNILAVADGNNNVTLWEEA 288 (288)
Q Consensus 247 ~~~~~~---~~~~~~~~i~~~~~spd-g~~l~s~~~d~~v~~w~~~ 288 (288)
++.-+. ...-|+..|++++|+|. .++|++|+.||.|++|.++
T Consensus 266 ~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 266 EPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 111111 11235568999999996 6789999999999999853
No 12
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=5.2e-37 Score=245.69 Aligned_cols=253 Identities=27% Similarity=0.449 Sum_probs=208.9
Q ss_pred CCCCccccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCc
Q 036510 1 MPPQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGT 80 (288)
Q Consensus 1 ~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~ 80 (288)
|.|...++||++.|+.++|+|+|.+|+|||.|..|.||++.+ .-+....+++|.++|..+.|.++ +..++|+|.|++
T Consensus 37 ~ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~g-dceN~~~lkgHsgAVM~l~~~~d--~s~i~S~gtDk~ 113 (338)
T KOG0265|consen 37 QAPIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYG-DCENFWVLKGHSGAVMELHGMRD--GSHILSCGTDKT 113 (338)
T ss_pred cchhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccc-cccceeeeccccceeEeeeeccC--CCEEEEecCCce
Confidence 456778889999999999999999999999999999999864 33567888999999999999875 899999999999
Q ss_pred EEEeecCCCCceEEeEEeecCCCceeEEEeccCCCC-eEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCC
Q 036510 81 VIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELG-LCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAP 159 (288)
Q Consensus 81 v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~-~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p 159 (288)
++.||++++. ..+.+++|.+.|+++. |...+ .++.+|+.|+++++||+|.......+ ..+.+++++.|.-
T Consensus 114 v~~wD~~tG~---~~rk~k~h~~~vNs~~--p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~----~~kyqltAv~f~d 184 (338)
T KOG0265|consen 114 VRGWDAETGK---RIRKHKGHTSFVNSLD--PSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTF----ENKYQLTAVGFKD 184 (338)
T ss_pred EEEEecccce---eeehhccccceeeecC--ccccCCeEEEecCCCceEEEEeecccchhhcc----ccceeEEEEEecc
Confidence 9999999876 4455778999999997 44333 46888999999999999976544322 1245688888876
Q ss_pred CCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEE
Q 036510 160 STAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVII 239 (288)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~i 239 (288)
+. ..+.+|+.|+.|++||++.+ +..+.+.||.+.|..+..+|++ .++.+-+.|.++++
T Consensus 185 ~s--------------~qv~sggIdn~ikvWd~r~~----d~~~~lsGh~DtIt~lsls~~g----s~llsnsMd~tvrv 242 (338)
T KOG0265|consen 185 TS--------------DQVISGGIDNDIKVWDLRKN----DGLYTLSGHADTITGLSLSRYG----SFLLSNSMDNTVRV 242 (338)
T ss_pred cc--------------cceeeccccCceeeeccccC----cceEEeecccCceeeEEeccCC----CccccccccceEEE
Confidence 55 56889999999999999876 5788999999999999999984 67999999999999
Q ss_pred EEeecCCCccc-ceEe----eccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510 240 WTVAREGDQWE-GKVL----HDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 240 w~~~~~~~~~~-~~~~----~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~ 287 (288)
||.+....... .... +.++.....++|+|+++.+..|++|+.|++||.
T Consensus 243 wd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~ 295 (338)
T KOG0265|consen 243 WDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDT 295 (338)
T ss_pred EEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeec
Confidence 99975321111 1222 233456889999999999999999999999994
No 13
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=4.2e-37 Score=273.20 Aligned_cols=207 Identities=26% Similarity=0.458 Sum_probs=185.6
Q ss_pred ccccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEe
Q 036510 5 KIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIW 84 (288)
Q Consensus 5 ~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iw 84 (288)
+.+.||+++|++.+|+|+.++|+|+|.|+++|||.+. +..++..+.||..+||.+.|+| .|-+|||+|.|++.++|
T Consensus 445 ~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~--t~s~~V~y~GH~~PVwdV~F~P--~GyYFatas~D~tArLW 520 (707)
T KOG0263|consen 445 RTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLD--TWSCLVIYKGHLAPVWDVQFAP--RGYYFATASHDQTARLW 520 (707)
T ss_pred EEeecCCCceeeeeecccccceeeccCCcceeeeecc--cceeEEEecCCCcceeeEEecC--CceEEEecCCCceeeee
Confidence 3467999999999999999999999999999999985 4577889999999999999985 48999999999999999
Q ss_pred ecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCC
Q 036510 85 KEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPG 164 (288)
Q Consensus 85 d~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~ 164 (288)
...... ..+.+.+|...|.|++|||+ ..++++|+.|.++|+||..++.. +++..+|..+|+++.|||.+
T Consensus 521 s~d~~~---PlRifaghlsDV~cv~FHPN--s~Y~aTGSsD~tVRlWDv~~G~~---VRiF~GH~~~V~al~~Sp~G--- 589 (707)
T KOG0263|consen 521 STDHNK---PLRIFAGHLSDVDCVSFHPN--SNYVATGSSDRTVRLWDVSTGNS---VRIFTGHKGPVTALAFSPCG--- 589 (707)
T ss_pred ecccCC---chhhhcccccccceEEECCc--ccccccCCCCceEEEEEcCCCcE---EEEecCCCCceEEEEEcCCC---
Confidence 875533 45678899999999999998 67899999999999999988743 56678999999999999987
Q ss_pred ceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeec
Q 036510 165 ALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAR 244 (288)
Q Consensus 165 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~ 244 (288)
++|++|+.|+.|++||+..+ +.+..+.+|++.|.++.||.++ ..||+|+.|.+|++||+..
T Consensus 590 -----------r~LaSg~ed~~I~iWDl~~~----~~v~~l~~Ht~ti~SlsFS~dg----~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 590 -----------RYLASGDEDGLIKIWDLANG----SLVKQLKGHTGTIYSLSFSRDG----NVLASGGADNSVRLWDLTK 650 (707)
T ss_pred -----------ceEeecccCCcEEEEEcCCC----cchhhhhcccCceeEEEEecCC----CEEEecCCCCeEEEEEchh
Confidence 89999999999999999887 5677889999999999999984 7899999999999999975
Q ss_pred C
Q 036510 245 E 245 (288)
Q Consensus 245 ~ 245 (288)
.
T Consensus 651 ~ 651 (707)
T KOG0263|consen 651 V 651 (707)
T ss_pred h
Confidence 3
No 14
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.5e-36 Score=255.71 Aligned_cols=249 Identities=26% Similarity=0.462 Sum_probs=208.1
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCC
Q 036510 11 EDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSN 90 (288)
Q Consensus 11 ~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~ 90 (288)
...|++++|+-+|+.||+|+.||.+++|+.++ .++.+|..|+++|.++.|+. .|++|++++.|+++.|||..++.
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G---~l~~tl~~HkgPI~slKWnk--~G~yilS~~vD~ttilwd~~~g~ 309 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDG---NLISTLGQHKGPIFSLKWNK--KGTYILSGGVDGTTILWDAHTGT 309 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEecCc---hhhhhhhccCCceEEEEEcC--CCCEEEeccCCccEEEEeccCce
Confidence 46899999999999999999999999999754 56788899999999999985 48999999999999999974322
Q ss_pred c--------------------------------------eEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEe
Q 036510 91 E--------------------------------------WIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFT 132 (288)
Q Consensus 91 ~--------------------------------------~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d 132 (288)
. -.+..++.+|.++|+++.|+|. +.+|++++.|++++||.
T Consensus 310 ~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~t--g~LLaS~SdD~TlkiWs 387 (524)
T KOG0273|consen 310 VKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPT--GSLLASCSDDGTLKIWS 387 (524)
T ss_pred EEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCC--CceEEEecCCCeeEeee
Confidence 0 0012356689999999999997 78999999999999999
Q ss_pred ecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcce
Q 036510 133 ARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWV 212 (288)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V 212 (288)
...... ...+++|...|..+.|+|.++... -.+....+++++.|++|++||+..+ .+++.+..|..+|
T Consensus 388 ~~~~~~---~~~l~~Hskei~t~~wsp~g~v~~-----n~~~~~~l~sas~dstV~lwdv~~g----v~i~~f~kH~~pV 455 (524)
T KOG0273|consen 388 MGQSNS---VHDLQAHSKEIYTIKWSPTGPVTS-----NPNMNLMLASASFDSTVKLWDVESG----VPIHTLMKHQEPV 455 (524)
T ss_pred cCCCcc---hhhhhhhccceeeEeecCCCCccC-----CCcCCceEEEeecCCeEEEEEccCC----ceeEeeccCCCce
Confidence 765543 345678999999999999985211 1223467999999999999999887 5788899999999
Q ss_pred EEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeecc--ccCeEEEEeecCCCEEEEEeCCCcEEEeEcC
Q 036510 213 RDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDF--KTPVYRVSWSLTGNILAVADGNNNVTLWEEA 288 (288)
Q Consensus 213 ~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~--~~~i~~~~~spdg~~l~s~~~d~~v~~w~~~ 288 (288)
.+|+|+|++ .++|+|+.|+.|.||+++.. ++++.. .+.|..++||.+|.+|..+-+|+.+++-|++
T Consensus 456 ysvafS~~g----~ylAsGs~dg~V~iws~~~~------~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 456 YSVAFSPNG----RYLASGSLDGCVHIWSTKTG------KLVKSYQGTGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred EEEEecCCC----cEEEecCCCCeeEeccccch------heeEeecCCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 999999984 79999999999999998743 334433 3568999999999999999999999998864
No 15
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=8.6e-36 Score=237.97 Aligned_cols=253 Identities=17% Similarity=0.328 Sum_probs=209.5
Q ss_pred CCCCccccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCc
Q 036510 1 MPPQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGT 80 (288)
Q Consensus 1 ~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~ 80 (288)
|..++++.||...|+++.|++|.++|+|+|.||.+-|||..... -.+.+.-...=|..++|+|. |+.+++|+.|+.
T Consensus 45 ~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~Ttn--K~haipl~s~WVMtCA~sPS--g~~VAcGGLdN~ 120 (343)
T KOG0286|consen 45 MRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTN--KVHAIPLPSSWVMTCAYSPS--GNFVACGGLDNK 120 (343)
T ss_pred eeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEccccc--ceeEEecCceeEEEEEECCC--CCeEEecCcCce
Confidence 45677899999999999999999999999999999999974322 23334445666889999864 899999999999
Q ss_pred EEEeecCCC--C-ceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEe
Q 036510 81 VIIWKEGNS--N-EWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSW 157 (288)
Q Consensus 81 v~iwd~~~~--~-~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~ 157 (288)
..||++... . .....+.+.+|.+-+.|+.|-+| ..+++++.|.+..+||+.++.. .....+|...|.++++
T Consensus 121 Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD---~~ilT~SGD~TCalWDie~g~~---~~~f~GH~gDV~slsl 194 (343)
T KOG0286|consen 121 CSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD---NHILTGSGDMTCALWDIETGQQ---TQVFHGHTGDVMSLSL 194 (343)
T ss_pred eEEEecccccccccceeeeeecCccceeEEEEEcCC---CceEecCCCceEEEEEcccceE---EEEecCCcccEEEEec
Confidence 999998643 1 12344678899999999999875 3588999999999999998754 3455699999999999
Q ss_pred CCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcE
Q 036510 158 APSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKV 237 (288)
Q Consensus 158 ~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i 237 (288)
+|... +.++||+.|++.+|||++.+ .+++++.+|..-|++|+|.|++ .-|++||+|+++
T Consensus 195 ~p~~~-------------ntFvSg~cD~~aklWD~R~~----~c~qtF~ghesDINsv~ffP~G----~afatGSDD~tc 253 (343)
T KOG0286|consen 195 SPSDG-------------NTFVSGGCDKSAKLWDVRSG----QCVQTFEGHESDINSVRFFPSG----DAFATGSDDATC 253 (343)
T ss_pred CCCCC-------------CeEEecccccceeeeeccCc----ceeEeecccccccceEEEccCC----CeeeecCCCcee
Confidence 99532 88999999999999999997 4778899999999999999984 569999999999
Q ss_pred EEEEeecCCCcccceEeec--cccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510 238 IIWTVAREGDQWEGKVLHD--FKTPVYRVSWSLTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 238 ~iw~~~~~~~~~~~~~~~~--~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~ 287 (288)
|+||++.-++ ...+.. ...+|++++||..|++|.+|-.|.++.|||.
T Consensus 254 RlyDlRaD~~---~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDt 302 (343)
T KOG0286|consen 254 RLYDLRADQE---LAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDT 302 (343)
T ss_pred EEEeecCCcE---EeeeccCcccCCceeEEEcccccEEEeeecCCceeEeec
Confidence 9999986421 122211 1358999999999999999999999999993
No 16
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=9.7e-38 Score=258.81 Aligned_cols=246 Identities=24% Similarity=0.415 Sum_probs=207.1
Q ss_pred cccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccc-cCeEEEEecCCCCCCEEEEeeCCCcEEEe
Q 036510 6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHK-GAVWEVAWAHPKFGSILASCSFDGTVIIW 84 (288)
Q Consensus 6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~l~s~s~d~~v~iw 84 (288)
++..|+.+|.+++|+++|.+++||+.+|.|++|+.+.. .+..+.+|+ ..|.+++|+|. ...|+|||+||+|+||
T Consensus 133 ilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn---nVk~~~ahh~eaIRdlafSpn--DskF~t~SdDg~ikiW 207 (464)
T KOG0284|consen 133 ILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN---NVKIIQAHHAEAIRDLAFSPN--DSKFLTCSDDGTIKIW 207 (464)
T ss_pred HhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh---hhHHhhHhhhhhhheeccCCC--CceeEEecCCCeEEEE
Confidence 45689999999999999999999999999999987532 344455555 99999999974 5799999999999999
Q ss_pred ecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCC
Q 036510 85 KEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPG 164 (288)
Q Consensus 85 d~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~ 164 (288)
|.....+ -..+.+|.-.|.|++|||. ..++++|+.|+.|++||.+++.++. .+.+|+..|..+.|+|++
T Consensus 208 df~~~ke---e~vL~GHgwdVksvdWHP~--kgLiasgskDnlVKlWDprSg~cl~---tlh~HKntVl~~~f~~n~--- 276 (464)
T KOG0284|consen 208 DFRMPKE---ERVLRGHGWDVKSVDWHPT--KGLIASGSKDNLVKLWDPRSGSCLA---TLHGHKNTVLAVKFNPNG--- 276 (464)
T ss_pred eccCCch---hheeccCCCCcceeccCCc--cceeEEccCCceeEeecCCCcchhh---hhhhccceEEEEEEcCCC---
Confidence 9876553 3456899999999999997 5689999999999999999886543 346799999999999997
Q ss_pred ceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeec
Q 036510 165 ALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAR 244 (288)
Q Consensus 165 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~ 244 (288)
++|+|+|.|..++++|++.- +.+..+++|...|+++.|+|-. .++|++|+.|+.|..|.+-.
T Consensus 277 -----------N~Llt~skD~~~kv~DiR~m----kEl~~~r~Hkkdv~~~~WhP~~---~~lftsgg~Dgsvvh~~v~~ 338 (464)
T KOG0284|consen 277 -----------NWLLTGSKDQSCKVFDIRTM----KELFTYRGHKKDVTSLTWHPLN---ESLFTSGGSDGSVVHWVVGL 338 (464)
T ss_pred -----------CeeEEccCCceEEEEehhHh----HHHHHhhcchhhheeecccccc---ccceeeccCCCceEEEeccc
Confidence 78999999999999999842 4566789999999999999963 57899999999999998863
Q ss_pred CCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510 245 EGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 245 ~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~ 287 (288)
... ...+-..|...|++++|+|=|.+|++|+.|+++++|..
T Consensus 339 ~~p--~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 339 EEP--LGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred ccc--ccCCCcccccceeeeeccccceeEeecCCCcceeeecc
Confidence 211 11222345678999999999999999999999999963
No 17
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.5e-36 Score=247.24 Aligned_cols=259 Identities=27% Similarity=0.426 Sum_probs=216.8
Q ss_pred ccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeec
Q 036510 7 ETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE 86 (288)
Q Consensus 7 ~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~ 86 (288)
+.||++.|.+|+|+-.|++|++++.|=.+++||.+. ..+++..+.+|...|.+++|-|. |.+++|+|.|.+|++|+.
T Consensus 146 LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~-~~~c~ks~~gh~h~vS~V~f~P~--gd~ilS~srD~tik~We~ 222 (406)
T KOG0295|consen 146 LRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDT-FFRCIKSLIGHEHGVSSVFFLPL--GDHILSCSRDNTIKAWEC 222 (406)
T ss_pred hhccccceeEEEEecCccEEEecCCccchhheeHHH-HHHHHHHhcCcccceeeEEEEec--CCeeeecccccceeEEec
Confidence 569999999999999999999999998899999863 35678889999999999999764 799999999999999999
Q ss_pred CCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCce
Q 036510 87 GNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGAL 166 (288)
Q Consensus 87 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~ 166 (288)
.++. .+.++.+|...|.-++.+.| +.++|+++.|++|++|-+.+.++.. .+..|.-.|.+++|.|......+
T Consensus 223 ~tg~---cv~t~~~h~ewvr~v~v~~D--Gti~As~s~dqtl~vW~~~t~~~k~---~lR~hEh~vEci~wap~~~~~~i 294 (406)
T KOG0295|consen 223 DTGY---CVKTFPGHSEWVRMVRVNQD--GTIIASCSNDQTLRVWVVATKQCKA---ELREHEHPVECIAWAPESSYPSI 294 (406)
T ss_pred ccce---eEEeccCchHhEEEEEecCC--eeEEEecCCCceEEEEEeccchhhh---hhhccccceEEEEecccccCcch
Confidence 8775 56789999999999998776 8899999999999999987764322 23467778999999998753222
Q ss_pred ec-ccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecC
Q 036510 167 VG-SGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVARE 245 (288)
Q Consensus 167 ~~-~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~ 245 (288)
.. .+.-+.+.++.+++.|++||+||+.++ .|+.++.+|.++|+.++|+|. ++||+|+.+|+++++||++..
T Consensus 295 ~~at~~~~~~~~l~s~SrDktIk~wdv~tg----~cL~tL~ghdnwVr~~af~p~----Gkyi~ScaDDktlrvwdl~~~ 366 (406)
T KOG0295|consen 295 SEATGSTNGGQVLGSGSRDKTIKIWDVSTG----MCLFTLVGHDNWVRGVAFSPG----GKYILSCADDKTLRVWDLKNL 366 (406)
T ss_pred hhccCCCCCccEEEeecccceEEEEeccCC----eEEEEEecccceeeeeEEcCC----CeEEEEEecCCcEEEEEeccc
Confidence 21 122234578999999999999999998 578889999999999999997 489999999999999999864
Q ss_pred CCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510 246 GDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 246 ~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~ 287 (288)
+ +. ..+.-|.--+++++|+.+-.++++|+-|.++++|.-
T Consensus 367 ~--cm-k~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 367 Q--CM-KTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred e--ee-eccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 2 11 112234556899999999999999999999999973
No 18
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.4e-36 Score=234.17 Aligned_cols=247 Identities=27% Similarity=0.442 Sum_probs=207.2
Q ss_pred cccceEEEEEcCC-CCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCC
Q 036510 10 HEDTVHDVAMDYY-GKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGN 88 (288)
Q Consensus 10 h~~~v~~~~~s~~-g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~ 88 (288)
-++.++.|+|++. .+.+++++.||+++|||...+ ..+++.++.|+..|+++.|+. .....++++|.|++||+|+..-
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~-s~Pi~~~kEH~~EV~Svdwn~-~~r~~~ltsSWD~TiKLW~~~r 136 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMP-SKPIHKFKEHKREVYSVDWNT-VRRRIFLTSSWDGTIKLWDPNR 136 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCC-CcchhHHHhhhhheEEecccc-ccceeEEeeccCCceEeecCCC
Confidence 4688999999986 488999999999999997644 357889999999999999975 3578889999999999999765
Q ss_pred CCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceec
Q 036510 89 SNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVG 168 (288)
Q Consensus 89 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~ 168 (288)
++ .+.++.+|...|....|+|.. +.++++++.|+++++||+|..+.. ...++|...+.+++|+.-..
T Consensus 137 ~~---Sv~Tf~gh~~~Iy~a~~sp~~-~nlfas~Sgd~~l~lwdvr~~gk~---~~i~ah~~Eil~cdw~ky~~------ 203 (311)
T KOG0277|consen 137 PN---SVQTFNGHNSCIYQAAFSPHI-PNLFASASGDGTLRLWDVRSPGKF---MSIEAHNSEILCCDWSKYNH------ 203 (311)
T ss_pred Cc---ceEeecCCccEEEEEecCCCC-CCeEEEccCCceEEEEEecCCCce---eEEEeccceeEeecccccCC------
Confidence 54 356789999999999999985 678999999999999999987543 33578999999999987653
Q ss_pred ccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCc
Q 036510 169 SGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQ 248 (288)
Q Consensus 169 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~ 248 (288)
++|+||+.|+.|++||++.- ...+.++.+|.-.|+.|.|||.. ...|||+|.|-++||||......
T Consensus 204 -------~vl~Tg~vd~~vr~wDir~~---r~pl~eL~gh~~AVRkvk~Sph~---~~lLaSasYDmT~riw~~~~~ds- 269 (311)
T KOG0277|consen 204 -------NVLATGGVDNLVRGWDIRNL---RTPLFELNGHGLAVRKVKFSPHH---ASLLASASYDMTVRIWDPERQDS- 269 (311)
T ss_pred -------cEEEecCCCceEEEEehhhc---cccceeecCCceEEEEEecCcch---hhHhhhccccceEEecccccchh-
Confidence 78999999999999999863 23466789999999999999975 46899999999999999875421
Q ss_pred ccceEeeccccCeEEEEeec-CCCEEEEEeCCCcEEEeE
Q 036510 249 WEGKVLHDFKTPVYRVSWSL-TGNILAVADGNNNVTLWE 286 (288)
Q Consensus 249 ~~~~~~~~~~~~i~~~~~sp-dg~~l~s~~~d~~v~~w~ 286 (288)
..+....|..-+..+.||+ ++.++|+.+=|+.+.||+
T Consensus 270 -~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 270 -AIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred -hhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence 1233445566788899998 678999999999999997
No 19
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.5e-35 Score=260.00 Aligned_cols=253 Identities=25% Similarity=0.372 Sum_probs=213.8
Q ss_pred CccccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCC--CceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcE
Q 036510 4 QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNN--TSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTV 81 (288)
Q Consensus 4 ~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v 81 (288)
+++..||++.|.++....+|-+|+|||+|+++++|.+++. ...++....+|+..|.+++++.. ....|+++|.|.++
T Consensus 358 c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~-~asffvsvS~D~tl 436 (775)
T KOG0319|consen 358 CQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKL-GASFFVSVSQDCTL 436 (775)
T ss_pred eEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeeccc-CccEEEEecCCceE
Confidence 4578899999999986667889999999999999988432 22346778899999999999754 46799999999999
Q ss_pred EEeecCCCCc--eEEeE----EeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEE
Q 036510 82 IIWKEGNSNE--WIKDH----VFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSV 155 (288)
Q Consensus 82 ~iwd~~~~~~--~~~~~----~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i 155 (288)
++|++....+ ..... +...|.+.|+|++.+|+ ..++|+|++|++.+||++.+ ......+.+|+.+|.++
T Consensus 437 K~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~n--dkLiAT~SqDktaKiW~le~---~~l~~vLsGH~RGvw~V 511 (775)
T KOG0319|consen 437 KLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPN--DKLIATGSQDKTAKIWDLEQ---LRLLGVLSGHTRGVWCV 511 (775)
T ss_pred EEecCCCcccccccceehhhHHHHhhcccccceEecCC--CceEEecccccceeeecccC---ceEEEEeeCCccceEEE
Confidence 9999865211 11111 22359999999999997 57899999999999999983 34556788999999999
Q ss_pred EeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCC
Q 036510 156 SWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDG 235 (288)
Q Consensus 156 ~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~ 235 (288)
.|+|.. +.++|+|.|++||||.+.+. .|++++.||...|..++|-.+ +++|+|++.||
T Consensus 512 ~Fs~~d--------------q~laT~SgD~TvKIW~is~f----SClkT~eGH~~aVlra~F~~~----~~qliS~~adG 569 (775)
T KOG0319|consen 512 SFSKND--------------QLLATCSGDKTVKIWSISTF----SCLKTFEGHTSAVLRASFIRN----GKQLISAGADG 569 (775)
T ss_pred Eecccc--------------ceeEeccCCceEEEEEeccc----eeeeeecCccceeEeeeeeeC----CcEEEeccCCC
Confidence 999987 78999999999999999875 689999999999999999987 47899999999
Q ss_pred cEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510 236 KVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 236 ~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~ 287 (288)
.|++|+++.+. + ...+..|...|++++-+|++.+|++|++|+.|.+|.+
T Consensus 570 liKlWnikt~e--C-~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD 618 (775)
T KOG0319|consen 570 LIKLWNIKTNE--C-EMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKD 618 (775)
T ss_pred cEEEEeccchh--h-hhhhhhccceeEEEeecCccceeEecCCCeEEEEeec
Confidence 99999998642 2 2456788999999999999999999999999999983
No 20
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=2e-36 Score=246.93 Aligned_cols=240 Identities=23% Similarity=0.461 Sum_probs=203.3
Q ss_pred ccccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEe
Q 036510 5 KIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIW 84 (288)
Q Consensus 5 ~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iw 84 (288)
+++.||++.|.|+.|. .+.|+|||.|.+|++||++. ++++.++-+|...|..+.|+ +.+++++|.|.++.+|
T Consensus 231 ~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~t--ge~l~tlihHceaVLhlrf~----ng~mvtcSkDrsiaVW 302 (499)
T KOG0281|consen 231 KILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNT--GEPLNTLIHHCEAVLHLRFS----NGYMVTCSKDRSIAVW 302 (499)
T ss_pred HhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccC--CchhhHHhhhcceeEEEEEe----CCEEEEecCCceeEEE
Confidence 4678999999988876 56999999999999999954 57789999999999999997 5799999999999999
Q ss_pred ecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCC
Q 036510 85 KEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPG 164 (288)
Q Consensus 85 d~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~ 164 (288)
|+.......+.+.+.+|...|+.+.|. .+++++++.|.+|++|++.+.. -.+...+|.-+|.|+.+.
T Consensus 303 dm~sps~it~rrVLvGHrAaVNvVdfd----~kyIVsASgDRTikvW~~st~e---fvRtl~gHkRGIAClQYr------ 369 (499)
T KOG0281|consen 303 DMASPTDITLRRVLVGHRAAVNVVDFD----DKYIVSASGDRTIKVWSTSTCE---FVRTLNGHKRGIACLQYR------ 369 (499)
T ss_pred eccCchHHHHHHHHhhhhhheeeeccc----cceEEEecCCceEEEEecccee---eehhhhcccccceehhcc------
Confidence 997765444556678999999999986 3589999999999999987642 345677899999988764
Q ss_pred ceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeec
Q 036510 165 ALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAR 244 (288)
Q Consensus 165 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~ 244 (288)
++++++||.|++|++||+..| .|+..++||.+-|+++.|.. ..||+|+.||+|++||+..
T Consensus 370 ----------~rlvVSGSSDntIRlwdi~~G----~cLRvLeGHEeLvRciRFd~------krIVSGaYDGkikvWdl~a 429 (499)
T KOG0281|consen 370 ----------DRLVVSGSSDNTIRLWDIECG----ACLRVLEGHEELVRCIRFDN------KRIVSGAYDGKIKVWDLQA 429 (499)
T ss_pred ----------CeEEEecCCCceEEEEecccc----HHHHHHhchHHhhhheeecC------ceeeeccccceEEEEeccc
Confidence 278999999999999999988 67888999999999999975 4799999999999999987
Q ss_pred CCCcccc------eEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510 245 EGDQWEG------KVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 245 ~~~~~~~------~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~ 287 (288)
..++... ...-+|.+.|..++| |..+|+++++|.+|-|||+
T Consensus 430 aldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdF 476 (499)
T KOG0281|consen 430 ALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDF 476 (499)
T ss_pred ccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEc
Confidence 6554111 112356678999999 8889999999999999994
No 21
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=6.3e-35 Score=245.96 Aligned_cols=250 Identities=26% Similarity=0.433 Sum_probs=200.5
Q ss_pred ccccceEEEEEcCCCC-EEEEeeCCCcEEEEEeCCCCce--------eeEEEec----cccCeEEEEecCCCCCCEEEEe
Q 036510 9 GHEDTVHDVAMDYYGK-RLATASSDYSIKIIGVGNNTSQ--------HLAKLSG----HKGAVWEVAWAHPKFGSILASC 75 (288)
Q Consensus 9 ~h~~~v~~~~~s~~g~-~l~s~~~d~~i~lwd~~~~~~~--------~~~~~~~----h~~~v~~~~~~~~~~~~~l~s~ 75 (288)
+|+.+|.+.+|+|-.. .|++|+.|.+.++|++...... ....+.+ ....|++++|+++ |..||+|
T Consensus 176 ~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~--G~~LatG 253 (524)
T KOG0273|consen 176 RHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNND--GTLLATG 253 (524)
T ss_pred cCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCC--CCeEEEe
Confidence 4999999999999654 8999999999999998531111 1111112 2367999999875 9999999
Q ss_pred eCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCee---------------
Q 036510 76 SFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWD--------------- 140 (288)
Q Consensus 76 s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~--------------- 140 (288)
+.||.++||+.. +. +..++..|++||.+|.|+.. +.++++++-|+++.+||...+...+
T Consensus 254 ~~~G~~riw~~~-G~---l~~tl~~HkgPI~slKWnk~--G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~ 327 (524)
T KOG0273|consen 254 SEDGEARIWNKD-GN---LISTLGQHKGPIFSLKWNKK--GTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQ 327 (524)
T ss_pred ecCcEEEEEecC-ch---hhhhhhccCCceEEEEEcCC--CCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEe
Confidence 999999999874 33 45677889999999999987 7789999999999999985332110
Q ss_pred -----------------------eEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCce
Q 036510 141 -----------------------TSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIW 197 (288)
Q Consensus 141 -----------------------~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 197 (288)
+.....+|.+.|.++.|+|.+ .+|+|+|.|+++|||.+...
T Consensus 328 ~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg--------------~LLaS~SdD~TlkiWs~~~~-- 391 (524)
T KOG0273|consen 328 SNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTG--------------SLLASCSDDGTLKIWSMGQS-- 391 (524)
T ss_pred cCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCC--------------ceEEEecCCCeeEeeecCCC--
Confidence 111244688889999999887 78999999999999998665
Q ss_pred eeeeeeccccCCcceEEEEecCCCCC-----CCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCE
Q 036510 198 KMDCFPALQMHTDWVRDVAWAPNLGL-----PKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNI 272 (288)
Q Consensus 198 ~~~~~~~~~~h~~~V~~v~~sp~~~~-----~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~ 272 (288)
.+.+.+.+|...|..+.|+|++.. .+..+++++.|++|++||+..... .-.+.+|..||++++|||+|++
T Consensus 392 --~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~---i~~f~kH~~pVysvafS~~g~y 466 (524)
T KOG0273|consen 392 --NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVP---IHTLMKHQEPVYSVAFSPNGRY 466 (524)
T ss_pred --cchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCce---eEeeccCCCceEEEEecCCCcE
Confidence 467788999999999999997631 457899999999999999986421 1234467899999999999999
Q ss_pred EEEEeCCCcEEEeEc
Q 036510 273 LAVADGNNNVTLWEE 287 (288)
Q Consensus 273 l~s~~~d~~v~~w~~ 287 (288)
+|+|+.||.|++|++
T Consensus 467 lAsGs~dg~V~iws~ 481 (524)
T KOG0273|consen 467 LASGSLDGCVHIWST 481 (524)
T ss_pred EEecCCCCeeEeccc
Confidence 999999999999984
No 22
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.8e-34 Score=235.01 Aligned_cols=251 Identities=24% Similarity=0.374 Sum_probs=200.1
Q ss_pred cccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEee
Q 036510 6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK 85 (288)
Q Consensus 6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd 85 (288)
...||.+.|.++++.|.+.++++|+.|++++|||+. +++++.++.||...|..+++|.- ..|+.|++.|+.|+-||
T Consensus 146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDla--tg~LkltltGhi~~vr~vavS~r--HpYlFs~gedk~VKCwD 221 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLA--TGQLKLTLTGHIETVRGVAVSKR--HPYLFSAGEDKQVKCWD 221 (460)
T ss_pred hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcc--cCeEEEeecchhheeeeeeeccc--CceEEEecCCCeeEEEe
Confidence 456999999999999999999999999999999995 45888999999999999999853 56999999999999999
Q ss_pred cCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCc
Q 036510 86 EGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGA 165 (288)
Q Consensus 86 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~ 165 (288)
+...+ .++.+.+|-..|.|++.+|. -.++++|+.|.++++||+|+.. ....+.+|...|.++.+.|..+
T Consensus 222 Le~nk---vIR~YhGHlS~V~~L~lhPT--ldvl~t~grDst~RvWDiRtr~---~V~~l~GH~~~V~~V~~~~~dp--- 290 (460)
T KOG0285|consen 222 LEYNK---VIRHYHGHLSGVYCLDLHPT--LDVLVTGGRDSTIRVWDIRTRA---SVHVLSGHTNPVASVMCQPTDP--- 290 (460)
T ss_pred chhhh---hHHHhccccceeEEEecccc--ceeEEecCCcceEEEeeecccc---eEEEecCCCCcceeEEeecCCC---
Confidence 97654 23456789999999999997 5789999999999999999753 3567789999999999988763
Q ss_pred eecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCC-----------------------
Q 036510 166 LVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLG----------------------- 222 (288)
Q Consensus 166 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~----------------------- 222 (288)
.++|||.|.+|++||++.+.. ...+..|.-.|++++.+|...
T Consensus 291 -----------qvit~S~D~tvrlWDl~agkt----~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~n 355 (460)
T KOG0285|consen 291 -----------QVITGSHDSTVRLWDLRAGKT----MITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQN 355 (460)
T ss_pred -----------ceEEecCCceEEEeeeccCce----eEeeecccceeeEEecCCchhhhhccCCccceeccCCccchhhc
Confidence 489999999999999987632 223333444444444443110
Q ss_pred -------------CCCcEEEEEeCCCcEEEEEeecCCCcccceEeecc-----ccCeEEEEeecCCCEEEEEeCCCcEEE
Q 036510 223 -------------LPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDF-----KTPVYRVSWSLTGNILAVADGNNNVTL 284 (288)
Q Consensus 223 -------------~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~-----~~~i~~~~~spdg~~l~s~~~d~~v~~ 284 (288)
+.+..+++|++.+.+.+||.++.........+-+. +..|++.+|...|..|++|..|++|++
T Consensus 356 lsgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~ 435 (460)
T KOG0285|consen 356 LSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKM 435 (460)
T ss_pred cccccceeeeeeeccCceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEE
Confidence 01357899999999999999875322122111111 246899999999999999999999999
Q ss_pred eE
Q 036510 285 WE 286 (288)
Q Consensus 285 w~ 286 (288)
|+
T Consensus 436 ~k 437 (460)
T KOG0285|consen 436 YK 437 (460)
T ss_pred Ee
Confidence 98
No 23
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=8.9e-35 Score=239.31 Aligned_cols=251 Identities=26% Similarity=0.364 Sum_probs=200.8
Q ss_pred ccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecC-CCCCCEEEEeeCCCcEEEee
Q 036510 7 ETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAH-PKFGSILASCSFDGTVIIWK 85 (288)
Q Consensus 7 ~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~s~d~~v~iwd 85 (288)
..-|++.|.+|+.. ++.|+||++||++++||.. ++...++.||.++|..++|.- ++....|+++|.|.++++|.
T Consensus 101 ~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~---Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~ 175 (423)
T KOG0313|consen 101 CFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLK---GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWK 175 (423)
T ss_pred cccchhhhhhhccc--CceEEEeecCCeeEEEecC---CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEE
Confidence 34799999999887 7899999999999999974 477899999999999888863 23345799999999999998
Q ss_pred cCCCCce-EEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCC----------------------CCeeeE
Q 036510 86 EGNSNEW-IKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARAD----------------------GGWDTS 142 (288)
Q Consensus 86 ~~~~~~~-~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~----------------------~~~~~~ 142 (288)
...+... ...+.-.+|...|.+++..++ +..+++|++|.+|.||+.... +.-.+.
T Consensus 176 ~~~~~~~~~~~~~~~GHk~~V~sVsv~~s--gtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~ 253 (423)
T KOG0313|consen 176 WNVGENKVKALKVCRGHKRSVDSVSVDSS--GTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPL 253 (423)
T ss_pred ecCchhhhhHHhHhcccccceeEEEecCC--CCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCce
Confidence 7654321 111223489999999999887 667999999999999993211 001123
Q ss_pred EeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCC
Q 036510 143 RIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLG 222 (288)
Q Consensus 143 ~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~ 222 (288)
..+++|...|.++.|++. ..++++|.|.+|+.||+.++. ++..+.+. ...++++++|..
T Consensus 254 vtl~GHt~~Vs~V~w~d~---------------~v~yS~SwDHTIk~WDletg~----~~~~~~~~-ksl~~i~~~~~~- 312 (423)
T KOG0313|consen 254 VTLEGHTEPVSSVVWSDA---------------TVIYSVSWDHTIKVWDLETGG----LKSTLTTN-KSLNCISYSPLS- 312 (423)
T ss_pred EEecccccceeeEEEcCC---------------CceEeecccceEEEEEeeccc----ceeeeecC-cceeEeeccccc-
Confidence 456799999999999984 568999999999999999873 33343333 347999999964
Q ss_pred CCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCC-CEEEEEeCCCcEEEeEcC
Q 036510 223 LPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTG-NILAVADGNNNVTLWEEA 288 (288)
Q Consensus 223 ~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg-~~l~s~~~d~~v~~w~~~ 288 (288)
.+|++||.|..|++||++.+........+.+|.++|.++.|+|.. .+|++|+.|+++++||++
T Consensus 313 ---~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvR 376 (423)
T KOG0313|consen 313 ---KLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVR 376 (423)
T ss_pred ---ceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEec
Confidence 689999999999999999876555556677899999999999965 569999999999999964
No 24
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-33 Score=223.49 Aligned_cols=256 Identities=20% Similarity=0.274 Sum_probs=202.2
Q ss_pred CCCCccccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCc
Q 036510 1 MPPQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGT 80 (288)
Q Consensus 1 ~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~ 80 (288)
|-|. ++.||+.++++|+++.+|.+|.|+++|.++.+|-..+ ++.+.++.||++.||++....+ ...+++||+|.+
T Consensus 1 mrpi-~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~n--GerlGty~GHtGavW~~Did~~--s~~liTGSAD~t 75 (327)
T KOG0643|consen 1 MRPI-LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLN--GERLGTYDGHTGAVWCCDIDWD--SKHLITGSADQT 75 (327)
T ss_pred CCcc-ccccCccccceEEecCCCcEEEEecCCCCceEEEecC--CceeeeecCCCceEEEEEecCC--cceeeeccccce
Confidence 4453 4679999999999999999999999999999997533 4779999999999999998754 789999999999
Q ss_pred EEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEE----eCCCcEEEEeecCCC----CeeeEEeeccCCCCe
Q 036510 81 VIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACG----SSDGNISVFTARADG----GWDTSRIDQAHPVGV 152 (288)
Q Consensus 81 v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg----~~d~~i~i~d~~~~~----~~~~~~~~~~~~~~v 152 (288)
+++||+.+++. ..+++ ...+|..+.|++++ ...+++. +..+.|.++|++... .-.+......+...+
T Consensus 76 ~kLWDv~tGk~---la~~k-~~~~Vk~~~F~~~g-n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~ski 150 (327)
T KOG0643|consen 76 AKLWDVETGKQ---LATWK-TNSPVKRVDFSFGG-NLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKI 150 (327)
T ss_pred eEEEEcCCCcE---EEEee-cCCeeEEEeeccCC-cEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccce
Confidence 99999998873 33343 35689999999984 2333322 334578899998543 112233344556778
Q ss_pred eEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEe
Q 036510 153 TSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASAS 232 (288)
Q Consensus 153 ~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s 232 (288)
++.-|.|-+ ..+++|..|+.|.+||.+++. +.+.+-+.|...|++++++|+. ++++++|
T Consensus 151 t~a~Wg~l~--------------~~ii~Ghe~G~is~~da~~g~---~~v~s~~~h~~~Ind~q~s~d~----T~FiT~s 209 (327)
T KOG0643|consen 151 TSALWGPLG--------------ETIIAGHEDGSISIYDARTGK---ELVDSDEEHSSKINDLQFSRDR----TYFITGS 209 (327)
T ss_pred eeeeecccC--------------CEEEEecCCCcEEEEEcccCc---eeeechhhhccccccccccCCc----ceEEecc
Confidence 899999876 789999999999999999874 4556667898899999999984 8999999
Q ss_pred CCCcEEEEEeecCCC----------------------------------------------------cccceEeeccccC
Q 036510 233 EDGKVIIWTVAREGD----------------------------------------------------QWEGKVLHDFKTP 260 (288)
Q Consensus 233 ~D~~i~iw~~~~~~~----------------------------------------------------~~~~~~~~~~~~~ 260 (288)
.|.+-++||...-.. ..+...+++|-+|
T Consensus 210 ~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGP 289 (327)
T KOG0643|consen 210 KDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGP 289 (327)
T ss_pred cCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccC
Confidence 999999999864210 0111123456689
Q ss_pred eEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510 261 VYRVSWSLTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 261 i~~~~~spdg~~l~s~~~d~~v~~w~~ 287 (288)
|++++|||||+..+||+.||.|||.-+
T Consensus 290 INsvAfhPdGksYsSGGEDG~VR~h~F 316 (327)
T KOG0643|consen 290 INSVAFHPDGKSYSSGGEDGYVRLHHF 316 (327)
T ss_pred cceeEECCCCcccccCCCCceEEEEEe
Confidence 999999999999999999999999753
No 25
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.9e-33 Score=252.65 Aligned_cols=246 Identities=27% Similarity=0.422 Sum_probs=204.0
Q ss_pred cccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCC
Q 036510 10 HEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNS 89 (288)
Q Consensus 10 h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~ 89 (288)
|...|.++.|+++|++|++++.|+.+++|+...........+.+|...|..++|+++ +.++++++.|++++|||+...
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d--~~~l~s~s~D~tiriwd~~~~ 235 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPD--GSYLLSGSDDKTLRIWDLKDD 235 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCC--CcEEEEecCCceEEEeeccCC
Confidence 478999999999999999999999999999843321256677899999999999975 789999999999999999433
Q ss_pred CceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecc
Q 036510 90 NEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGS 169 (288)
Q Consensus 90 ~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~ 169 (288)
. ..++++.+|...|++++|+|+ +.++++|+.|++|+|||++.+. ....+++|...|..++|++++
T Consensus 236 ~--~~~~~l~gH~~~v~~~~f~p~--g~~i~Sgs~D~tvriWd~~~~~---~~~~l~~hs~~is~~~f~~d~-------- 300 (456)
T KOG0266|consen 236 G--RNLKTLKGHSTYVTSVAFSPD--GNLLVSGSDDGTVRIWDVRTGE---CVRKLKGHSDGISGLAFSPDG-------- 300 (456)
T ss_pred C--eEEEEecCCCCceEEEEecCC--CCEEEEecCCCcEEEEeccCCe---EEEeeeccCCceEEEEECCCC--------
Confidence 2 256778899999999999998 5789999999999999998742 345678999999999999997
Q ss_pred cccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCc--ceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCC
Q 036510 170 GFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTD--WVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGD 247 (288)
Q Consensus 170 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~--~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~ 247 (288)
++|++++.|+.|++||+.++... +...+.++.. ++++++|+|+. .+|++++.|+++++||+....
T Consensus 301 ------~~l~s~s~d~~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~fsp~~----~~ll~~~~d~~~~~w~l~~~~- 367 (456)
T KOG0266|consen 301 ------NLLVSASYDGTIRVWDLETGSKL--CLKLLSGAENSAPVTSVQFSPNG----KYLLSASLDRTLKLWDLRSGK- 367 (456)
T ss_pred ------CEEEEcCCCccEEEEECCCCcee--eeecccCCCCCCceeEEEECCCC----cEEEEecCCCeEEEEEccCCc-
Confidence 78999999999999999887421 3445555544 49999999984 789999999999999998542
Q ss_pred cccceEeecccc---CeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510 248 QWEGKVLHDFKT---PVYRVSWSLTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 248 ~~~~~~~~~~~~---~i~~~~~spdg~~l~s~~~d~~v~~w~~ 287 (288)
......+|.. .+.+..+++.|+++++|+.|+.|++|+.
T Consensus 368 --~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~ 408 (456)
T KOG0266|consen 368 --SVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDS 408 (456)
T ss_pred --ceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeC
Confidence 2233344433 5666777899999999999999999995
No 26
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.4e-33 Score=223.42 Aligned_cols=269 Identities=36% Similarity=0.679 Sum_probs=212.0
Q ss_pred cccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCC--CceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEE
Q 036510 6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNN--TSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVII 83 (288)
Q Consensus 6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~i 83 (288)
+-++|.+-|+++.|++.|+++|+|+.|.+++|||.+.+ +..+......|.++|+.+.|.||..|+.+|+||.|++++|
T Consensus 8 i~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~i 87 (361)
T KOG2445|consen 8 IDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSI 87 (361)
T ss_pred cccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceee
Confidence 45699999999999999999999999999999996433 3455666789999999999999999999999999999999
Q ss_pred eecC------CCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCC---eeeEEeec-------c
Q 036510 84 WKEG------NSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGG---WDTSRIDQ-------A 147 (288)
Q Consensus 84 wd~~------~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~---~~~~~~~~-------~ 147 (288)
|.-. .+..|.+..++..-+..|+.+.|.|..-+..+|+++.||+||||...+... |......+ .
T Consensus 88 WEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~ 167 (361)
T KOG2445|consen 88 WEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGK 167 (361)
T ss_pred eeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccc
Confidence 9741 124677778888888999999999998888999999999999998765432 22211111 2
Q ss_pred CCCCeeEEEeCCCCCCCceecccccCCCceeEEeecC-----CcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCC
Q 036510 148 HPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCD-----NTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLG 222 (288)
Q Consensus 148 ~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~ 222 (288)
+.....|+.|+|.... ..+|+.|+.+ +.++||...++.++-..+.++.+|.++|++++|.|+.+
T Consensus 168 ~~~~~~CvsWn~sr~~-----------~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~G 236 (361)
T KOG2445|consen 168 NKQPCFCVSWNPSRMH-----------EPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIG 236 (361)
T ss_pred ccCcceEEeecccccc-----------CceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccC
Confidence 4456789999976421 1345655544 37999988776544445667789999999999999876
Q ss_pred CCCcEEEEEeCCCcEEEEEeecCC-----------C-c--ccc---eEeeccccCeEEEEeecCCCEEEEEeCCCcEEEe
Q 036510 223 LPKSTIASASEDGKVIIWTVAREG-----------D-Q--WEG---KVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLW 285 (288)
Q Consensus 223 ~~~~~l~s~s~D~~i~iw~~~~~~-----------~-~--~~~---~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w 285 (288)
.+-.+||+++.|| |+||++.... . . ... ..+.+|.+.|.++.|+-.|..|++.+.||.||+|
T Consensus 237 r~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLW 315 (361)
T KOG2445|consen 237 RSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLW 315 (361)
T ss_pred CceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeeh
Confidence 5557899999999 9999998311 0 0 111 2234677899999999999999999999999999
Q ss_pred E
Q 036510 286 E 286 (288)
Q Consensus 286 ~ 286 (288)
+
T Consensus 316 k 316 (361)
T KOG2445|consen 316 K 316 (361)
T ss_pred h
Confidence 7
No 27
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.5e-33 Score=251.97 Aligned_cols=251 Identities=29% Similarity=0.449 Sum_probs=204.3
Q ss_pred cccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEee
Q 036510 6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK 85 (288)
Q Consensus 6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd 85 (288)
.+.+|...|.+++|+|+|+++++++.|+++++||+. ..+..++++.+|...|++++|++. +++++||+.|++|+|||
T Consensus 198 ~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~-~~~~~~~~l~gH~~~v~~~~f~p~--g~~i~Sgs~D~tvriWd 274 (456)
T KOG0266|consen 198 ELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLK-DDGRNLKTLKGHSTYVTSVAFSPD--GNLLVSGSDDGTVRIWD 274 (456)
T ss_pred cccccccceeeeEECCCCcEEEEecCCceEEEeecc-CCCeEEEEecCCCCceEEEEecCC--CCEEEEecCCCcEEEEe
Confidence 346999999999999999999999999999999993 345788999999999999999865 69999999999999999
Q ss_pred cCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCC--CeeEEEeCCCCCC
Q 036510 86 EGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPV--GVTSVSWAPSTAP 163 (288)
Q Consensus 86 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~--~v~~i~~~p~~~~ 163 (288)
+++++ +...+++|.+.|.+++|+++ +.++++++.|+.|++||+..+... .......+.. .+.++.|+|++
T Consensus 275 ~~~~~---~~~~l~~hs~~is~~~f~~d--~~~l~s~s~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~fsp~~-- 346 (456)
T KOG0266|consen 275 VRTGE---CVRKLKGHSDGISGLAFSPD--GNLLVSASYDGTIRVWDLETGSKL-CLKLLSGAENSAPVTSVQFSPNG-- 346 (456)
T ss_pred ccCCe---EEEeeeccCCceEEEEECCC--CCEEEEcCCCccEEEEECCCCcee-eeecccCCCCCCceeEEEECCCC--
Confidence 98855 56778999999999999998 677888999999999999876421 1222333333 58999999997
Q ss_pred CceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEee
Q 036510 164 GALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVA 243 (288)
Q Consensus 164 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~ 243 (288)
.++++++.|+++++||+..+ ++.....+|...+.+ .|++.....+..+++|+.|+.|++|++.
T Consensus 347 ------------~~ll~~~~d~~~~~w~l~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~sg~~d~~v~~~~~~ 409 (456)
T KOG0266|consen 347 ------------KYLLSASLDRTLKLWDLRSG----KSVGTYTGHSNLVRC-IFSPTLSTGGKLIYSGSEDGSVYVWDSS 409 (456)
T ss_pred ------------cEEEEecCCCeEEEEEccCC----cceeeecccCCccee-EecccccCCCCeEEEEeCCceEEEEeCC
Confidence 78999999999999999876 455566777765423 2333222235789999999999999998
Q ss_pred cCCCcccceEeecc-ccCeEEEEeecCCCEEEEEe--CCCcEEEeEc
Q 036510 244 REGDQWEGKVLHDF-KTPVYRVSWSLTGNILAVAD--GNNNVTLWEE 287 (288)
Q Consensus 244 ~~~~~~~~~~~~~~-~~~i~~~~~spdg~~l~s~~--~d~~v~~w~~ 287 (288)
.... ...+.+| ...+..++++|..+++++++ .|+.+++|+.
T Consensus 410 s~~~---~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 410 SGGI---LQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKY 453 (456)
T ss_pred ccch---hhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecC
Confidence 6422 2334556 67899999999999999998 7999999974
No 28
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=3.8e-35 Score=243.46 Aligned_cols=239 Identities=23% Similarity=0.405 Sum_probs=201.0
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCC
Q 036510 11 EDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSN 90 (288)
Q Consensus 11 ~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~ 90 (288)
+..|..|.|.|+|+.|++|+..|.+.||+...-..+ ..+.+|.++|.++.|+++ +..++||+.+|.||+|+....+
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFE--tilQaHDs~Vr~m~ws~~--g~wmiSgD~gG~iKyWqpnmnn 171 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFE--TILQAHDSPVRTMKWSHN--GTWMISGDKGGMIKYWQPNMNN 171 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHH--HHhhhhcccceeEEEccC--CCEEEEcCCCceEEecccchhh
Confidence 458889999999999999999999999986432222 235789999999999975 8999999999999999875443
Q ss_pred ceEEeEEeecC-CCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecc
Q 036510 91 EWIKDHVFEDH-KSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGS 169 (288)
Q Consensus 91 ~~~~~~~~~~h-~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~ 169 (288)
++.+..| ...|.+++|+|.+ ..+++++.||+|+|||.+.... ...+.+|.-.|.+++|.|..
T Consensus 172 ----Vk~~~ahh~eaIRdlafSpnD--skF~t~SdDg~ikiWdf~~~ke---e~vL~GHgwdVksvdWHP~k-------- 234 (464)
T KOG0284|consen 172 ----VKIIQAHHAEAIRDLAFSPND--SKFLTCSDDGTIKIWDFRMPKE---ERVLRGHGWDVKSVDWHPTK-------- 234 (464)
T ss_pred ----hHHhhHhhhhhhheeccCCCC--ceeEEecCCCeEEEEeccCCch---hheeccCCCCcceeccCCcc--------
Confidence 3344444 4899999999964 3589999999999999986532 23457899999999999987
Q ss_pred cccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcc
Q 036510 170 GFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQW 249 (288)
Q Consensus 170 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~ 249 (288)
.++++||.|+.||+||.+++ .|+.++.+|+..|..+.|+|++ .+|+|+|.|..++++|++..+
T Consensus 235 ------gLiasgskDnlVKlWDprSg----~cl~tlh~HKntVl~~~f~~n~----N~Llt~skD~~~kv~DiR~mk--- 297 (464)
T KOG0284|consen 235 ------GLIASGSKDNLVKLWDPRSG----SCLATLHGHKNTVLAVKFNPNG----NWLLTGSKDQSCKVFDIRTMK--- 297 (464)
T ss_pred ------ceeEEccCCceeEeecCCCc----chhhhhhhccceEEEEEEcCCC----CeeEEccCCceEEEEehhHhH---
Confidence 78999999999999999998 6888999999999999999985 789999999999999998542
Q ss_pred cceEeeccccCeEEEEeec-CCCEEEEEeCCCcEEEeEc
Q 036510 250 EGKVLHDFKTPVYRVSWSL-TGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 250 ~~~~~~~~~~~i~~~~~sp-dg~~l~s~~~d~~v~~w~~ 287 (288)
+...+..|++-+++++|+| .-.+|.+|+.|+.|..|.+
T Consensus 298 El~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v 336 (464)
T KOG0284|consen 298 ELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVV 336 (464)
T ss_pred HHHHhhcchhhheeeccccccccceeeccCCCceEEEec
Confidence 2344566788899999999 4678999999999999974
No 29
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=8.5e-33 Score=220.88 Aligned_cols=243 Identities=18% Similarity=0.251 Sum_probs=204.2
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCC----CceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeec
Q 036510 11 EDTVHDVAMDYYGKRLATASSDYSIKIIGVGNN----TSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE 86 (288)
Q Consensus 11 ~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~----~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~ 86 (288)
...|...+|+|.|+++|+|+.|+...||++... ..+..+.+.+|++-+.++.|.. ...|+++|.|.+..+||+
T Consensus 97 s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d---D~~ilT~SGD~TCalWDi 173 (343)
T KOG0286|consen 97 SSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD---DNHILTGSGDMTCALWDI 173 (343)
T ss_pred ceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcC---CCceEecCCCceEEEEEc
Confidence 467888899999999999999999999998632 1244667899999999999964 468999999999999999
Q ss_pred CCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCce
Q 036510 87 GNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGAL 166 (288)
Q Consensus 87 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~ 166 (288)
+++. +...+.+|.+.|.+|++.|. +++.+++|+-|++.++||+|.+... +...+|...|.++.|.|++
T Consensus 174 e~g~---~~~~f~GH~gDV~slsl~p~-~~ntFvSg~cD~~aklWD~R~~~c~---qtF~ghesDINsv~ffP~G----- 241 (343)
T KOG0286|consen 174 ETGQ---QTQVFHGHTGDVMSLSLSPS-DGNTFVSGGCDKSAKLWDVRSGQCV---QTFEGHESDINSVRFFPSG----- 241 (343)
T ss_pred ccce---EEEEecCCcccEEEEecCCC-CCCeEEecccccceeeeeccCccee---EeecccccccceEEEccCC-----
Confidence 8875 56778999999999999995 3778999999999999999987543 4557899999999999997
Q ss_pred ecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCC
Q 036510 167 VGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREG 246 (288)
Q Consensus 167 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~ 246 (288)
.-+++|+.|+++++||++..+. +. +.+-..-...|++|+||.. +++|.+|..|.++.+||.-+.
T Consensus 242 ---------~afatGSDD~tcRlyDlRaD~~-~a-~ys~~~~~~gitSv~FS~S----GRlLfagy~d~~c~vWDtlk~- 305 (343)
T KOG0286|consen 242 ---------DAFATGSDDATCRLYDLRADQE-LA-VYSHDSIICGITSVAFSKS----GRLLFAGYDDFTCNVWDTLKG- 305 (343)
T ss_pred ---------CeeeecCCCceeEEEeecCCcE-Ee-eeccCcccCCceeEEEccc----ccEEEeeecCCceeEeecccc-
Confidence 6799999999999999998631 12 1222333447999999986 478889999999999997643
Q ss_pred CcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510 247 DQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE 286 (288)
Q Consensus 247 ~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~ 286 (288)
.....+.+|++.|.++.-+|||.-+++||=|.++|||.
T Consensus 306 --e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 306 --ERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred --ceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 23456789999999999999999999999999999994
No 30
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.1e-32 Score=235.20 Aligned_cols=271 Identities=23% Similarity=0.363 Sum_probs=200.7
Q ss_pred CCCccc---cccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEe---ccccCeEEEEecCCCCCCEEEEe
Q 036510 2 PPQKIE---TGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLS---GHKGAVWEVAWAHPKFGSILASC 75 (288)
Q Consensus 2 ~~~~~~---~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~~~l~s~ 75 (288)
||+|+. ..|...|+++.|+|||.+++|+|.|+++.|||- .+++.+..+. +|++.|++|+|+|| +..|+|+
T Consensus 178 PPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDG--ktge~vg~l~~~~aHkGsIfalsWsPD--s~~~~T~ 253 (603)
T KOG0318|consen 178 PPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDG--KTGEKVGELEDSDAHKGSIFALSWSPD--STQFLTV 253 (603)
T ss_pred CCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcC--CCccEEEEecCCCCccccEEEEEECCC--CceEEEe
Confidence 666643 368999999999999999999999999999985 4456677777 99999999999975 8999999
Q ss_pred eCCCcEEEeecCCCCc------------------eE----------------------EeEEeecCCCceeEEEeccCCC
Q 036510 76 SFDGTVIIWKEGNSNE------------------WI----------------------KDHVFEDHKSSVNSIDWAPHEL 115 (288)
Q Consensus 76 s~d~~v~iwd~~~~~~------------------~~----------------------~~~~~~~h~~~v~~l~~~p~~~ 115 (288)
|+|.++||||+.+... |. ..+++++|...|+++..+|+
T Consensus 254 SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d-- 331 (603)
T KOG0318|consen 254 SADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPD-- 331 (603)
T ss_pred cCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCC--
Confidence 9999999999854321 00 01246689999999999998
Q ss_pred CeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCC------------------------------------
Q 036510 116 GLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAP------------------------------------ 159 (288)
Q Consensus 116 ~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p------------------------------------ 159 (288)
+..+.+|+.||.|.-|+...+... ....+.|+..|.++.-+.
T Consensus 332 ~~~i~SgsyDG~I~~W~~~~g~~~--~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~ 409 (603)
T KOG0318|consen 332 GKTIYSGSYDGHINSWDSGSGTSD--RLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPK 409 (603)
T ss_pred CCEEEeeccCceEEEEecCCcccc--ccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCce
Confidence 578999999999999998654221 111122333333322111
Q ss_pred ------CCCCCcee------------------------cccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCC
Q 036510 160 ------STAPGALV------------------------GSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHT 209 (288)
Q Consensus 160 ------~~~~~~~~------------------------~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~ 209 (288)
++....+. .....++++.++.|+.|+.|+||.+..... +....+..|.
T Consensus 410 ~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l--~ee~~~~~h~ 487 (603)
T KOG0318|consen 410 GLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDEL--KEEAKLLEHR 487 (603)
T ss_pred eEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcc--cceeeeeccc
Confidence 11000000 001234678899999999999999977531 2223456799
Q ss_pred cceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEcC
Q 036510 210 DWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEEA 288 (288)
Q Consensus 210 ~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~~ 288 (288)
.+|++|+||||+ .|||+|-..+.+.+||....+.. .....=|.+.|.+++|||+.+++|+||.|-.|.||.++
T Consensus 488 a~iT~vaySpd~----~yla~~Da~rkvv~yd~~s~~~~--~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~ 560 (603)
T KOG0318|consen 488 AAITDVAYSPDG----AYLAAGDASRKVVLYDVASREVK--TNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVK 560 (603)
T ss_pred CCceEEEECCCC----cEEEEeccCCcEEEEEcccCcee--cceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEcc
Confidence 999999999984 79999999999999999865321 11112245789999999999999999999999999863
No 31
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.8e-34 Score=233.90 Aligned_cols=250 Identities=23% Similarity=0.338 Sum_probs=213.8
Q ss_pred cccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEee
Q 036510 6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK 85 (288)
Q Consensus 6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd 85 (288)
-+.||..+|+.+-|.|+-..+++++.|.+|++||.. +++....+.||+.+|.+|+|... |.++++||.|=.+++||
T Consensus 103 ~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~--tg~~e~~LrGHt~sv~di~~~a~--Gk~l~tcSsDl~~~LWd 178 (406)
T KOG0295|consen 103 KLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTE--TGELERSLRGHTDSVFDISFDAS--GKYLATCSSDLSAKLWD 178 (406)
T ss_pred hhhccccceeeeeeccCceEEEEecCCceEEEEEcc--chhhhhhhhccccceeEEEEecC--ccEEEecCCccchhhee
Confidence 356899999999999999999999999999999984 44668899999999999999764 89999999999999999
Q ss_pred cCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCc
Q 036510 86 EGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGA 165 (288)
Q Consensus 86 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~ 165 (288)
.... +.+.+.+.+|...|.++.|-|- +.++++++.|++|+.|++.++-. .....+|+.-|..+.-+.++
T Consensus 179 ~~~~--~~c~ks~~gh~h~vS~V~f~P~--gd~ilS~srD~tik~We~~tg~c---v~t~~~h~ewvr~v~v~~DG---- 247 (406)
T KOG0295|consen 179 FDTF--FRCIKSLIGHEHGVSSVFFLPL--GDHILSCSRDNTIKAWECDTGYC---VKTFPGHSEWVRMVRVNQDG---- 247 (406)
T ss_pred HHHH--HHHHHHhcCcccceeeEEEEec--CCeeeecccccceeEEeccccee---EEeccCchHhEEEEEecCCe----
Confidence 8642 3345567789999999999997 67899999999999999987643 34556888888888877766
Q ss_pred eecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCC-----------CCcEEEEEeCC
Q 036510 166 LVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGL-----------PKSTIASASED 234 (288)
Q Consensus 166 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~-----------~~~~l~s~s~D 234 (288)
.++++++.|.++++|=+.++ .|...+++|..+|.+++|.|...+ .+.+++++|.|
T Consensus 248 ----------ti~As~s~dqtl~vW~~~t~----~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrD 313 (406)
T KOG0295|consen 248 ----------TIIASCSNDQTLRVWVVATK----QCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRD 313 (406)
T ss_pred ----------eEEEecCCCceEEEEEeccc----hhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeeccc
Confidence 78999999999999998876 456678999999999999996533 13589999999
Q ss_pred CcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510 235 GKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 235 ~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~ 287 (288)
++||+||+... . ..-.+.+|.++|..++|+|-|++|+|+..|+++|+||.
T Consensus 314 ktIk~wdv~tg--~-cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl 363 (406)
T KOG0295|consen 314 KTIKIWDVSTG--M-CLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDL 363 (406)
T ss_pred ceEEEEeccCC--e-EEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEe
Confidence 99999999864 1 23445788999999999999999999999999999995
No 32
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=3.8e-35 Score=239.42 Aligned_cols=232 Identities=19% Similarity=0.317 Sum_probs=197.7
Q ss_pred cccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCC
Q 036510 10 HEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNS 89 (288)
Q Consensus 10 h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~ 89 (288)
..+.|+|++.. ...++||..|++|++||.+ ...++..+.||+++|.++.|. ..+++|||.|.+|++||..++
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n--~~~c~~~L~GHtGSVLCLqyd----~rviisGSSDsTvrvWDv~tg 267 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKN--SLECLKILTGHTGSVLCLQYD----ERVIVSGSSDSTVRVWDVNTG 267 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccc--cHHHHHhhhcCCCcEEeeecc----ceEEEecCCCceEEEEeccCC
Confidence 45789998876 4579999999999999984 457889999999999999984 579999999999999999887
Q ss_pred CceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecc
Q 036510 90 NEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGS 169 (288)
Q Consensus 90 ~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~ 169 (288)
. ..+++-+|-..|..+.|+- .++++++.|.++++||+.........+++-+|...|..+.|+.
T Consensus 268 e---~l~tlihHceaVLhlrf~n----g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~---------- 330 (499)
T KOG0281|consen 268 E---PLNTLIHHCEAVLHLRFSN----GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---------- 330 (499)
T ss_pred c---hhhHHhhhcceeEEEEEeC----CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc----------
Confidence 6 3456778999999999974 4689999999999999976654444456678998999998864
Q ss_pred cccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcc
Q 036510 170 GFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQW 249 (288)
Q Consensus 170 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~ 249 (288)
++++|+|.|++||+|++.+. +++.++.+|+-.|-|+++. +.++|+||+|++|++||++...
T Consensus 331 ------kyIVsASgDRTikvW~~st~----efvRtl~gHkRGIAClQYr------~rlvVSGSSDntIRlwdi~~G~--- 391 (499)
T KOG0281|consen 331 ------KYIVSASGDRTIKVWSTSTC----EFVRTLNGHKRGIACLQYR------DRLVVSGSSDNTIRLWDIECGA--- 391 (499)
T ss_pred ------ceEEEecCCceEEEEeccce----eeehhhhcccccceehhcc------CeEEEecCCCceEEEEeccccH---
Confidence 67999999999999999886 6788999999999999875 4689999999999999998642
Q ss_pred cceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510 250 EGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 250 ~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~ 287 (288)
....+.+|+.-|.++-| |.+.|++|+-||+|+|||+
T Consensus 392 cLRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl 427 (499)
T KOG0281|consen 392 CLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDL 427 (499)
T ss_pred HHHHHhchHHhhhheee--cCceeeeccccceEEEEec
Confidence 23456778888999999 8899999999999999994
No 33
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.7e-33 Score=249.93 Aligned_cols=251 Identities=19% Similarity=0.335 Sum_probs=193.6
Q ss_pred CccccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCC--------------------------------CC-------
Q 036510 4 QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGN--------------------------------NT------- 44 (288)
Q Consensus 4 ~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~--------------------------------~~------- 44 (288)
|++-.+|++.|.+++||+||+|||+||.|+.|+||.+-. ..
T Consensus 260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~ 339 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS 339 (712)
T ss_pred eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence 334448999999999999999999999999999998743 00
Q ss_pred -------------------ceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCce
Q 036510 45 -------------------SQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSV 105 (288)
Q Consensus 45 -------------------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v 105 (288)
.++++.+.||.+.|.+|.||. .++|+|+|+|+|||+|++.... +.+.| .|.+-|
T Consensus 340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK---n~fLLSSSMDKTVRLWh~~~~~---CL~~F-~HndfV 412 (712)
T KOG0283|consen 340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK---NNFLLSSSMDKTVRLWHPGRKE---CLKVF-SHNDFV 412 (712)
T ss_pred ccccCCccccCCCccccccccchhhhhccchhheeccccc---CCeeEeccccccEEeecCCCcc---eeeEE-ecCCee
Confidence 023455679999999999985 6799999999999999997655 34555 599999
Q ss_pred eEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCC
Q 036510 106 NSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDN 185 (288)
Q Consensus 106 ~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~ 185 (288)
+|++|+|.+ .+++++|+.|+++|||++....- ..- .....-|+++.|.|++ +..+.|+.+|
T Consensus 413 TcVaFnPvD-DryFiSGSLD~KvRiWsI~d~~V---v~W-~Dl~~lITAvcy~PdG--------------k~avIGt~~G 473 (712)
T KOG0283|consen 413 TCVAFNPVD-DRYFISGSLDGKVRLWSISDKKV---VDW-NDLRDLITAVCYSPDG--------------KGAVIGTFNG 473 (712)
T ss_pred EEEEecccC-CCcEeecccccceEEeecCcCee---Eee-hhhhhhheeEEeccCC--------------ceEEEEEecc
Confidence 999999986 67899999999999999975421 111 1123569999999997 7788999999
Q ss_pred cEEEEEEeCCceeeee-eecc----ccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccc--
Q 036510 186 TVKVWKLYNGIWKMDC-FPAL----QMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFK-- 258 (288)
Q Consensus 186 ~i~iwd~~~~~~~~~~-~~~~----~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~-- 258 (288)
.+++|+.......... +... ..|. .|+.++|.|.. ...|+..+.|..|||+|.+... ....++++.
T Consensus 474 ~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~---~~~vLVTSnDSrIRI~d~~~~~---lv~KfKG~~n~ 546 (712)
T KOG0283|consen 474 YCRFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGD---PDEVLVTSNDSRIRIYDGRDKD---LVHKFKGFRNT 546 (712)
T ss_pred EEEEEEccCCeEEEeeeEeeccCccccCc-eeeeeEecCCC---CCeEEEecCCCceEEEeccchh---hhhhhcccccC
Confidence 9999998764221111 1100 1233 79999999964 3468889999999999986432 123344543
Q ss_pred cCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510 259 TPVYRVSWSLTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 259 ~~i~~~~~spdg~~l~s~~~d~~v~~w~~ 287 (288)
..-.++.|+.||++|++|+.|.-|+||+.
T Consensus 547 ~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~ 575 (712)
T KOG0283|consen 547 SSQISASFSSDGKHIVSASEDSWVYIWKN 575 (712)
T ss_pred CcceeeeEccCCCEEEEeecCceEEEEeC
Confidence 24578999999999999999999999984
No 34
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=100.00 E-value=3e-33 Score=235.04 Aligned_cols=258 Identities=23% Similarity=0.405 Sum_probs=207.6
Q ss_pred ccccceEEEEEcCCC-CEEEEeeCCCcEEEEEeCCCCcee--------eEEEeccccCeEEEEecCCCCCCEEEEeeCCC
Q 036510 9 GHEDTVHDVAMDYYG-KRLATASSDYSIKIIGVGNNTSQH--------LAKLSGHKGAVWEVAWAHPKFGSILASCSFDG 79 (288)
Q Consensus 9 ~h~~~v~~~~~s~~g-~~l~s~~~d~~i~lwd~~~~~~~~--------~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~ 79 (288)
.|++.|+.+..-|.. .++++.+..+.+.|||........ -.+|.||++.-++++|++. ..-.|++++.|+
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~-~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQ-QEGTLLSGSDDH 200 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccc-cceeEeeccCCC
Confidence 689999999988754 677888888999999986432111 2378899998899999875 456899999999
Q ss_pred cEEEeecCCCCc----eEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEE
Q 036510 80 TVIIWKEGNSNE----WIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSV 155 (288)
Q Consensus 80 ~v~iwd~~~~~~----~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i 155 (288)
+|++||+..... ......+.+|...|.-++|+|.. ..++++++.|+.+.|||+|.+ ........++|+..+.|+
T Consensus 201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h-~~lF~sv~dd~~L~iwD~R~~-~~~~~~~~~ah~~~vn~~ 278 (422)
T KOG0264|consen 201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLH-EDLFGSVGDDGKLMIWDTRSN-TSKPSHSVKAHSAEVNCV 278 (422)
T ss_pred cEEEEeccccccCCccccceEEeecCCcceehhhccccc-hhhheeecCCCeEEEEEcCCC-CCCCcccccccCCceeEE
Confidence 999999854322 23445678999999999999976 567999999999999999973 333345567899999999
Q ss_pred EeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCC
Q 036510 156 SWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDG 235 (288)
Q Consensus 156 ~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~ 235 (288)
.|+|... ..|+|||.|++|+|||+|+- .+.++++.+|.+.|..|.|||+. .+.|||.+.|+
T Consensus 279 ~fnp~~~-------------~ilAT~S~D~tV~LwDlRnL---~~~lh~~e~H~dev~~V~WSPh~---etvLASSg~D~ 339 (422)
T KOG0264|consen 279 AFNPFNE-------------FILATGSADKTVALWDLRNL---NKPLHTFEGHEDEVFQVEWSPHN---ETVLASSGTDR 339 (422)
T ss_pred EeCCCCC-------------ceEEeccCCCcEEEeechhc---ccCceeccCCCcceEEEEeCCCC---CceeEecccCC
Confidence 9999873 67999999999999999873 24678899999999999999985 57899999999
Q ss_pred cEEEEEeecCCCc----------ccceEee-ccccCeEEEEeecCCC-EEEEEeCCCcEEEeEcC
Q 036510 236 KVIIWTVAREGDQ----------WEGKVLH-DFKTPVYRVSWSLTGN-ILAVADGNNNVTLWEEA 288 (288)
Q Consensus 236 ~i~iw~~~~~~~~----------~~~~~~~-~~~~~i~~~~~spdg~-~l~s~~~d~~v~~w~~~ 288 (288)
.+.+||+...++. .+...+| +|...|....|+|... .|+|++.|++++||+++
T Consensus 340 rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 340 RLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred cEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 9999999865321 1111222 5667899999999875 58888999999999964
No 35
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=2.5e-34 Score=243.05 Aligned_cols=250 Identities=19% Similarity=0.288 Sum_probs=201.5
Q ss_pred cccccccceEEEEEcC-CCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEe
Q 036510 6 IETGHEDTVHDVAMDY-YGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIW 84 (288)
Q Consensus 6 ~~~~h~~~v~~~~~s~-~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iw 84 (288)
..+||++.|+++.|.| .+.+|+|++.|+.|+||++.. .+.+++++.||..+|.+++|+.. |..|+|+|.|+++++|
T Consensus 209 ~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~-~~~~lrtf~gH~k~Vrd~~~s~~--g~~fLS~sfD~~lKlw 285 (503)
T KOG0282|consen 209 NLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD-DRRCLRTFKGHRKPVRDASFNNC--GTSFLSASFDRFLKLW 285 (503)
T ss_pred eccCCccccchhhhccceeeEEEecCCCceEEEEEEec-Ccceehhhhcchhhhhhhhcccc--CCeeeeeecceeeeee
Confidence 4569999999999999 799999999999999999975 56889999999999999999864 8999999999999999
Q ss_pred ecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCC
Q 036510 85 KEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPG 164 (288)
Q Consensus 85 d~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~ 164 (288)
|.+++.+ ...+. -...++|+.|+|++ ...+++|+.|+.|+.||+|.+.- ++.+..|-..|..|.|-+++
T Consensus 286 DtETG~~---~~~f~-~~~~~~cvkf~pd~-~n~fl~G~sd~ki~~wDiRs~kv---vqeYd~hLg~i~~i~F~~~g--- 354 (503)
T KOG0282|consen 286 DTETGQV---LSRFH-LDKVPTCVKFHPDN-QNIFLVGGSDKKIRQWDIRSGKV---VQEYDRHLGAILDITFVDEG--- 354 (503)
T ss_pred ccccceE---EEEEe-cCCCceeeecCCCC-CcEEEEecCCCcEEEEeccchHH---HHHHHhhhhheeeeEEccCC---
Confidence 9998863 22332 24578999999997 57788999999999999998642 22334567789999998887
Q ss_pred ceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeec
Q 036510 165 ALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAR 244 (288)
Q Consensus 165 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~ 244 (288)
.++++.+.|++++||+.+.+. .++.+.....|+ ..++..+|+. ..+++-+.|+.|.++.+..
T Consensus 355 -----------~rFissSDdks~riWe~~~~v-~ik~i~~~~~hs--mP~~~~~P~~----~~~~aQs~dN~i~ifs~~~ 416 (503)
T KOG0282|consen 355 -----------RRFISSSDDKSVRIWENRIPV-PIKNIADPEMHT--MPCLTLHPNG----KWFAAQSMDNYIAIFSTVP 416 (503)
T ss_pred -----------ceEeeeccCccEEEEEcCCCc-cchhhcchhhcc--CcceecCCCC----CeehhhccCceEEEEeccc
Confidence 789999999999999987652 223333334455 6889999984 6899999999999998765
Q ss_pred CCCcccceEeeccc--cCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510 245 EGDQWEGKVLHDFK--TPVYRVSWSLTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 245 ~~~~~~~~~~~~~~--~~i~~~~~spdg~~l~s~~~d~~v~~w~~ 287 (288)
+......+.+.+|. +.-..|.|||||.+|++|++||.+.+||.
T Consensus 417 ~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdw 461 (503)
T KOG0282|consen 417 PFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDW 461 (503)
T ss_pred ccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeec
Confidence 43222223344443 34567999999999999999999999983
No 36
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.3e-32 Score=213.84 Aligned_cols=243 Identities=19% Similarity=0.281 Sum_probs=199.7
Q ss_pred cccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEee
Q 036510 6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK 85 (288)
Q Consensus 6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd 85 (288)
++..|+++|..+.|+-||+|.++++.|++|+||+.. ++.+++++.+|...|..++-+.+ +..|++|+.|+.+.+||
T Consensus 12 ~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~--rg~liktYsghG~EVlD~~~s~D--nskf~s~GgDk~v~vwD 87 (307)
T KOG0316|consen 12 ILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPL--RGALIKTYSGHGHEVLDAALSSD--NSKFASCGGDKAVQVWD 87 (307)
T ss_pred eecccccceEEEEEccCCCEEEEcCCCceEEeeccc--ccceeeeecCCCceeeecccccc--ccccccCCCCceEEEEE
Confidence 456899999999999999999999999999999874 45789999999999999987754 78999999999999999
Q ss_pred cCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCc
Q 036510 86 EGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGA 165 (288)
Q Consensus 86 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~ 165 (288)
+.++. ..+.+.+|...|+.++|+.+ ..++++|+.|.++++||-|... ..+.++.......|.+|..+.
T Consensus 88 V~TGk---v~Rr~rgH~aqVNtV~fNee--sSVv~SgsfD~s~r~wDCRS~s-~ePiQildea~D~V~Si~v~~------ 155 (307)
T KOG0316|consen 88 VNTGK---VDRRFRGHLAQVNTVRFNEE--SSVVASGSFDSSVRLWDCRSRS-FEPIQILDEAKDGVSSIDVAE------ 155 (307)
T ss_pred cccCe---eeeecccccceeeEEEecCc--ceEEEeccccceeEEEEcccCC-CCccchhhhhcCceeEEEecc------
Confidence 98876 45668899999999999976 5689999999999999998653 334455555667888887653
Q ss_pred eecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecC
Q 036510 166 LVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVARE 245 (288)
Q Consensus 166 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~ 245 (288)
+.+++||.||+++.||++.|. +....-+ ++|++++|++++ +..++++.|+++++-|-+..
T Consensus 156 ----------heIvaGS~DGtvRtydiR~G~----l~sDy~g--~pit~vs~s~d~----nc~La~~l~stlrLlDk~tG 215 (307)
T KOG0316|consen 156 ----------HEIVAGSVDGTVRTYDIRKGT----LSSDYFG--HPITSVSFSKDG----NCSLASSLDSTLRLLDKETG 215 (307)
T ss_pred ----------cEEEeeccCCcEEEEEeecce----eehhhcC--CcceeEEecCCC----CEEEEeeccceeeecccchh
Confidence 569999999999999999873 2222333 459999999984 78889999999999986543
Q ss_pred CCcccceEeeccccCe--EEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510 246 GDQWEGKVLHDFKTPV--YRVSWSLTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 246 ~~~~~~~~~~~~~~~i--~~~~~spdg~~l~s~~~d~~v~~w~~ 287 (288)
+ .....++|++.- ..++++.....+++||+||.|.+||+
T Consensus 216 k---lL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdL 256 (307)
T KOG0316|consen 216 K---LLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDL 256 (307)
T ss_pred H---HHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEe
Confidence 2 112345666544 45788888999999999999999995
No 37
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=8.7e-32 Score=257.87 Aligned_cols=249 Identities=21% Similarity=0.305 Sum_probs=195.0
Q ss_pred cccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCC--Cc----eeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcE
Q 036510 8 TGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNN--TS----QHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTV 81 (288)
Q Consensus 8 ~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~--~~----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v 81 (288)
.+|...|.+++|+|+|++|++|+.|++|+||+.... .. ..+..+. +...+.+++|+++ .+.+|++++.|++|
T Consensus 480 ~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~-~~~~las~~~Dg~v 557 (793)
T PLN00181 480 LNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSY-IKSQVASSNFEGVV 557 (793)
T ss_pred cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccC-CCCEEEEEeCCCeE
Confidence 358999999999999999999999999999997421 00 1223333 3467899999764 47899999999999
Q ss_pred EEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCC
Q 036510 82 IIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPST 161 (288)
Q Consensus 82 ~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~ 161 (288)
++||+.++. ....+.+|...|++++|+|.+ +.+|++|+.|++|++||++.+..... ... ...+.++.|.+..
T Consensus 558 ~lWd~~~~~---~~~~~~~H~~~V~~l~~~p~~-~~~L~Sgs~Dg~v~iWd~~~~~~~~~---~~~-~~~v~~v~~~~~~ 629 (793)
T PLN00181 558 QVWDVARSQ---LVTEMKEHEKRVWSIDYSSAD-PTLLASGSDDGSVKLWSINQGVSIGT---IKT-KANICCVQFPSES 629 (793)
T ss_pred EEEECCCCe---EEEEecCCCCCEEEEEEcCCC-CCEEEEEcCCCEEEEEECCCCcEEEE---Eec-CCCeEEEEEeCCC
Confidence 999987654 345677899999999999853 56899999999999999986543322 222 3568899996543
Q ss_pred CCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEE
Q 036510 162 APGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWT 241 (288)
Q Consensus 162 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~ 241 (288)
+..|++|+.|+.|++||++... ..+..+.+|...|.++.|.+ +.+|++++.|++|++||
T Consensus 630 -------------g~~latgs~dg~I~iwD~~~~~---~~~~~~~~h~~~V~~v~f~~-----~~~lvs~s~D~~ikiWd 688 (793)
T PLN00181 630 -------------GRSLAFGSADHKVYYYDLRNPK---LPLCTMIGHSKTVSYVRFVD-----SSTLVSSSTDNTLKLWD 688 (793)
T ss_pred -------------CCEEEEEeCCCeEEEEECCCCC---ccceEecCCCCCEEEEEEeC-----CCEEEEEECCCEEEEEe
Confidence 2789999999999999997642 12345678999999999974 35899999999999999
Q ss_pred eecCCC---cccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510 242 VAREGD---QWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 242 ~~~~~~---~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~ 287 (288)
+..... ......+.+|...+..++|+|+|++|++|+.|++|+||+.
T Consensus 689 ~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~ 737 (793)
T PLN00181 689 LSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHK 737 (793)
T ss_pred CCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEEC
Confidence 874311 0112344567788999999999999999999999999984
No 38
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.3e-32 Score=240.85 Aligned_cols=246 Identities=21% Similarity=0.375 Sum_probs=197.0
Q ss_pred cccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecC
Q 036510 8 TGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEG 87 (288)
Q Consensus 8 ~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~ 87 (288)
.||...+.+++.+|||+++|+|+.|+.|+|||.. ++-|+.++..|+..|+.+.|... ++.++|.|.||+|+.||+.
T Consensus 347 QgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~--SgfC~vTFteHts~Vt~v~f~~~--g~~llssSLDGtVRAwDlk 422 (893)
T KOG0291|consen 347 QGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQ--SGFCFVTFTEHTSGVTAVQFTAR--GNVLLSSSLDGTVRAWDLK 422 (893)
T ss_pred cccccceeeEEECCCCcEEEeccCCCcEEEEecc--CceEEEEeccCCCceEEEEEEec--CCEEEEeecCCeEEeeeec
Confidence 3899999999999999999999999999999984 45799999999999999999864 8999999999999999986
Q ss_pred CCCceEEeEEeec-CCCceeEEEeccCCCCeEEEEEeCCC-cEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCc
Q 036510 88 NSNEWIKDHVFED-HKSSVNSIDWAPHELGLCLACGSSDG-NISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGA 165 (288)
Q Consensus 88 ~~~~~~~~~~~~~-h~~~v~~l~~~p~~~~~~l~sg~~d~-~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~ 165 (288)
.-.. .+++.. ..-...|++..|. +.++.+|+.|. .|.+|++++++ ...++.+|.++|.++.|+|.+
T Consensus 423 RYrN---fRTft~P~p~QfscvavD~s--GelV~AG~~d~F~IfvWS~qTGq---llDiLsGHEgPVs~l~f~~~~---- 490 (893)
T KOG0291|consen 423 RYRN---FRTFTSPEPIQFSCVAVDPS--GELVCAGAQDSFEIFVWSVQTGQ---LLDILSGHEGPVSGLSFSPDG---- 490 (893)
T ss_pred ccce---eeeecCCCceeeeEEEEcCC--CCEEEeeccceEEEEEEEeecCe---eeehhcCCCCcceeeEEcccc----
Confidence 5442 334432 2224557776665 78888888887 79999998874 345678999999999999997
Q ss_pred eecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecC
Q 036510 166 LVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVARE 245 (288)
Q Consensus 166 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~ 245 (288)
+.|+|+|+|++||+||+.......+ ++ .+..-|.+|.|+|++ ..|+.+..||.|.+||+...
T Consensus 491 ----------~~LaS~SWDkTVRiW~if~s~~~vE---tl-~i~sdvl~vsfrPdG----~elaVaTldgqItf~d~~~~ 552 (893)
T KOG0291|consen 491 ----------SLLASGSWDKTVRIWDIFSSSGTVE---TL-EIRSDVLAVSFRPDG----KELAVATLDGQITFFDIKEA 552 (893)
T ss_pred ----------CeEEeccccceEEEEEeeccCceee---eE-eeccceeEEEEcCCC----CeEEEEEecceEEEEEhhhc
Confidence 7899999999999999976421112 22 244558999999985 67999999999999999865
Q ss_pred CCcc-------------cc-eEeecc---ccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510 246 GDQW-------------EG-KVLHDF---KTPVYRVSWSLTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 246 ~~~~-------------~~-~~~~~~---~~~i~~~~~spdg~~l~s~~~d~~v~~w~~ 287 (288)
.+.. +. ....+. .++.+.++||+||..|++|+..+.|++|++
T Consensus 553 ~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v 611 (893)
T KOG0291|consen 553 VQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDV 611 (893)
T ss_pred eeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEEC
Confidence 3210 00 011111 246899999999999999999999999985
No 39
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.2e-32 Score=239.11 Aligned_cols=241 Identities=23% Similarity=0.392 Sum_probs=200.7
Q ss_pred ccceEEEEEcCCCCEEEEeeCC-CcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCC
Q 036510 11 EDTVHDVAMDYYGKRLATASSD-YSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNS 89 (288)
Q Consensus 11 ~~~v~~~~~s~~g~~l~s~~~d-~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~ 89 (288)
+..|..++|+..|.+||-||.- |-+-+|++..+ ..+...+||...+++++++|| |+++++|+.||.|||||...+
T Consensus 307 ~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE--sYVlKQQgH~~~i~~l~YSpD--gq~iaTG~eDgKVKvWn~~Sg 382 (893)
T KOG0291|consen 307 DQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE--SYVLKQQGHSDRITSLAYSPD--GQLIATGAEDGKVKVWNTQSG 382 (893)
T ss_pred cceeeEEEecccCCEEEEcCCccceEEEEEeecc--ceeeeccccccceeeEEECCC--CcEEEeccCCCcEEEEeccCc
Confidence 4678889999999999987754 78899999655 446677899999999999975 999999999999999999877
Q ss_pred CceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecc
Q 036510 90 NEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGS 169 (288)
Q Consensus 90 ~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~ 169 (288)
. +..++..|...|+.+.|+.. +..+++.+.||+++.||+.+..++..++ ...+.+..+++-.|.+
T Consensus 383 f---C~vTFteHts~Vt~v~f~~~--g~~llssSLDGtVRAwDlkRYrNfRTft--~P~p~QfscvavD~sG-------- 447 (893)
T KOG0291|consen 383 F---CFVTFTEHTSGVTAVQFTAR--GNVLLSSSLDGTVRAWDLKRYRNFRTFT--SPEPIQFSCVAVDPSG-------- 447 (893)
T ss_pred e---EEEEeccCCCceEEEEEEec--CCEEEEeecCCeEEeeeecccceeeeec--CCCceeeeEEEEcCCC--------
Confidence 6 56789999999999999987 7789999999999999998765543322 2345567788877776
Q ss_pred cccCCCceeEEeecCCc-EEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCc
Q 036510 170 GFLDPVQKLCSGGCDNT-VKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQ 248 (288)
Q Consensus 170 ~~~~~~~~l~s~~~d~~-i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~ 248 (288)
.+++.|+.|.. |.+|++.+| +.+..+.||.++|.+++|+|++ +.|||||+|++||+||+-....
T Consensus 448 ------elV~AG~~d~F~IfvWS~qTG----qllDiLsGHEgPVs~l~f~~~~----~~LaS~SWDkTVRiW~if~s~~- 512 (893)
T KOG0291|consen 448 ------ELVCAGAQDSFEIFVWSVQTG----QLLDILSGHEGPVSGLSFSPDG----SLLASGSWDKTVRIWDIFSSSG- 512 (893)
T ss_pred ------CEEEeeccceEEEEEEEeecC----eeeehhcCCCCcceeeEEcccc----CeEEeccccceEEEEEeeccCc-
Confidence 67888888875 999999998 5677899999999999999984 7899999999999999975421
Q ss_pred ccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510 249 WEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 249 ~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~ 287 (288)
..++ -++...++.++|+|||+.||++..||.|.+||.
T Consensus 513 -~vEt-l~i~sdvl~vsfrPdG~elaVaTldgqItf~d~ 549 (893)
T KOG0291|consen 513 -TVET-LEIRSDVLAVSFRPDGKELAVATLDGQITFFDI 549 (893)
T ss_pred -eeee-EeeccceeEEEEcCCCCeEEEEEecceEEEEEh
Confidence 1122 233456899999999999999999999999994
No 40
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=4e-32 Score=223.69 Aligned_cols=253 Identities=23% Similarity=0.358 Sum_probs=200.2
Q ss_pred CccccccccceEEEEEc-CC--CCEEEEeeCCCcEEEEEeCCCC--ceeeEEEeccccCeEEEEecCCCCCCEEEEeeCC
Q 036510 4 QKIETGHEDTVHDVAMD-YY--GKRLATASSDYSIKIIGVGNNT--SQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFD 78 (288)
Q Consensus 4 ~~~~~~h~~~v~~~~~s-~~--g~~l~s~~~d~~i~lwd~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d 78 (288)
.++..||.++|.++.+- ++ ...++++|.|.++++|.++.+. .+.+..-.||...|-++.-.. +|..++|||.|
T Consensus 137 ~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~--sgtr~~SgS~D 214 (423)
T KOG0313|consen 137 IKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDS--SGTRFCSGSWD 214 (423)
T ss_pred EEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecC--CCCeEEeeccc
Confidence 34677999999987753 32 3469999999999999886433 223344459999999999764 48999999999
Q ss_pred CcEEEeecCCCC----------------------ceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCC
Q 036510 79 GTVIIWKEGNSN----------------------EWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARAD 136 (288)
Q Consensus 79 ~~v~iwd~~~~~----------------------~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~ 136 (288)
.+++||+..... +-.++.++.+|..+|.++-|++. ..+.++++|-+|+.||+..+
T Consensus 215 ~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~---~v~yS~SwDHTIk~WDletg 291 (423)
T KOG0313|consen 215 TMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDA---TVIYSVSWDHTIKVWDLETG 291 (423)
T ss_pred ceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCC---CceEeecccceEEEEEeecc
Confidence 999999831100 01123457899999999999984 45789999999999999887
Q ss_pred CCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEE
Q 036510 137 GGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVA 216 (288)
Q Consensus 137 ~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~ 216 (288)
+..... ..+....+++.+|.. .+|++|+.|+.|++||.+++.-. -..+++.+|.++|.+|.
T Consensus 292 ~~~~~~----~~~ksl~~i~~~~~~--------------~Ll~~gssdr~irl~DPR~~~gs-~v~~s~~gH~nwVssvk 352 (423)
T KOG0313|consen 292 GLKSTL----TTNKSLNCISYSPLS--------------KLLASGSSDRHIRLWDPRTGDGS-VVSQSLIGHKNWVSSVK 352 (423)
T ss_pred cceeee----ecCcceeEeeccccc--------------ceeeecCCCCceeecCCCCCCCc-eeEEeeecchhhhhhee
Confidence 643322 245678899998866 78999999999999999987433 23567899999999999
Q ss_pred ecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510 217 WAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE 286 (288)
Q Consensus 217 ~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~ 286 (288)
|+|.. ..+|++||.|+++++||++....+ ...++.|..+|.++.|+ +|..|++|+.|++|++++
T Consensus 353 wsp~~---~~~~~S~S~D~t~klWDvRS~k~p--lydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 353 WSPTN---EFQLVSGSYDNTVKLWDVRSTKAP--LYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFK 416 (423)
T ss_pred cCCCC---ceEEEEEecCCeEEEEEeccCCCc--ceeeccCCceEEEEecc-CCceEEeccCcceEEEec
Confidence 99975 578999999999999999976432 34567888999999995 567889999999999986
No 41
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=4.5e-31 Score=252.94 Aligned_cols=249 Identities=20% Similarity=0.299 Sum_probs=196.1
Q ss_pred cccceEEEEEcC-CCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCC
Q 036510 10 HEDTVHDVAMDY-YGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGN 88 (288)
Q Consensus 10 h~~~v~~~~~s~-~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~ 88 (288)
+...|.+++|++ ++++|++++.|++|++||+.. .+.+..+.+|.+.|++++|++. ++.+|+||+.|++|++||+.+
T Consensus 531 ~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~--~~~~~~~~~H~~~V~~l~~~p~-~~~~L~Sgs~Dg~v~iWd~~~ 607 (793)
T PLN00181 531 SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVAR--SQLVTEMKEHEKRVWSIDYSSA-DPTLLASGSDDGSVKLWSINQ 607 (793)
T ss_pred ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCC--CeEEEEecCCCCCEEEEEEcCC-CCCEEEEEcCCCEEEEEECCC
Confidence 346788999987 478999999999999999854 3667888999999999999753 478999999999999999976
Q ss_pred CCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceec
Q 036510 89 SNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVG 168 (288)
Q Consensus 89 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~ 168 (288)
+. ....+..+ ..|.++.|++.. +.++++|+.|+.|++||++.... ......+|...|.++.|.+ +
T Consensus 608 ~~---~~~~~~~~-~~v~~v~~~~~~-g~~latgs~dg~I~iwD~~~~~~--~~~~~~~h~~~V~~v~f~~-~------- 672 (793)
T PLN00181 608 GV---SIGTIKTK-ANICCVQFPSES-GRSLAFGSADHKVYYYDLRNPKL--PLCTMIGHSKTVSYVRFVD-S------- 672 (793)
T ss_pred Cc---EEEEEecC-CCeEEEEEeCCC-CCEEEEEeCCCeEEEEECCCCCc--cceEecCCCCCEEEEEEeC-C-------
Confidence 54 23344433 579999997643 67899999999999999986532 1234468999999999963 3
Q ss_pred ccccCCCceeEEeecCCcEEEEEEeCCce--eeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCC
Q 036510 169 SGFLDPVQKLCSGGCDNTVKVWKLYNGIW--KMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREG 246 (288)
Q Consensus 169 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~ 246 (288)
..|++++.|++|+|||+..+.. ..+.+..+.+|...+.++.|+|++ .+||+|+.|++|++|+.....
T Consensus 673 -------~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~----~~lasgs~D~~v~iw~~~~~~ 741 (793)
T PLN00181 673 -------STLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSD----GYIATGSETNEVFVYHKAFPM 741 (793)
T ss_pred -------CEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCC----CEEEEEeCCCEEEEEECCCCC
Confidence 5799999999999999875311 113456788999999999999974 689999999999999975321
Q ss_pred Ccc----------cceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510 247 DQW----------EGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 247 ~~~----------~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~ 287 (288)
... .......+...|.+++|+|+|++|++|+.||+|+||++
T Consensus 742 ~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 742 PVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred ceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 100 00111233456999999999999999999999999996
No 42
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=1.9e-33 Score=220.27 Aligned_cols=253 Identities=23% Similarity=0.349 Sum_probs=199.2
Q ss_pred CCCccccccccceEEEEEcC---CCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCC
Q 036510 2 PPQKIETGHEDTVHDVAMDY---YGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFD 78 (288)
Q Consensus 2 ~~~~~~~~h~~~v~~~~~s~---~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d 78 (288)
.-+..+.||+.+|..+.||| +|-.|.|++.|+.-.|-. +.++..+.++.||++.||+.+... +...-+|+++|
T Consensus 5 ~~pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~--g~tgdwigtfeghkgavw~~~l~~--na~~aasaaad 80 (334)
T KOG0278|consen 5 QTPLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRN--GDTGDWIGTFEGHKGAVWSATLNK--NATRAASAAAD 80 (334)
T ss_pred cCceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhcc--CCCCCcEEeeeccCcceeeeecCc--hhhhhhhhccc
Confidence 34567889999999999985 898999999999887754 345678999999999999988754 35677899999
Q ss_pred CcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeC
Q 036510 79 GTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWA 158 (288)
Q Consensus 79 ~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~ 158 (288)
-+.++||.-++.+ .+.+ .|+.-|.+++|+.| ..+|++|+.++.+|+||+.+... ++....+|+..|..+-|.
T Consensus 81 ftakvw~a~tgde---lhsf-~hkhivk~~af~~d--s~~lltgg~ekllrvfdln~p~A--pp~E~~ghtg~Ir~v~wc 152 (334)
T KOG0278|consen 81 FTAKVWDAVTGDE---LHSF-EHKHIVKAVAFSQD--SNYLLTGGQEKLLRVFDLNRPKA--PPKEISGHTGGIRTVLWC 152 (334)
T ss_pred chhhhhhhhhhhh---hhhh-hhhheeeeEEeccc--chhhhccchHHHhhhhhccCCCC--CchhhcCCCCcceeEEEe
Confidence 9999999877763 3444 48888999999987 66799999999999999976543 334456899999999998
Q ss_pred CCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeee------------------------------------ee
Q 036510 159 PSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMD------------------------------------CF 202 (288)
Q Consensus 159 p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~------------------------------------~~ 202 (288)
... +.++|++.|++|||||.+++...+. .+
T Consensus 153 ~eD--------------~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~l 218 (334)
T KOG0278|consen 153 HED--------------KCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLL 218 (334)
T ss_pred ccC--------------ceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEeccccccce
Confidence 776 5678889999999999988742111 00
Q ss_pred eccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcE
Q 036510 203 PALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNV 282 (288)
Q Consensus 203 ~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v 282 (288)
+..+. ...|.+.+++|+. ..+|+|+.|..++-||.....+. ....++|.+||.++.|+|||...|+||.||+|
T Consensus 219 Ks~k~-P~nV~SASL~P~k----~~fVaGged~~~~kfDy~TgeEi--~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTi 291 (334)
T KOG0278|consen 219 KSYKM-PCNVESASLHPKK----EFFVAGGEDFKVYKFDYNTGEEI--GSYNKGHFGPVHCVRFSPDGELYASGSEDGTI 291 (334)
T ss_pred eeccC-ccccccccccCCC----ceEEecCcceEEEEEeccCCcee--eecccCCCCceEEEEECCCCceeeccCCCceE
Confidence 00111 1135566667764 57999999999999998765322 22247888999999999999999999999999
Q ss_pred EEeEc
Q 036510 283 TLWEE 287 (288)
Q Consensus 283 ~~w~~ 287 (288)
|||.+
T Consensus 292 rlWQt 296 (334)
T KOG0278|consen 292 RLWQT 296 (334)
T ss_pred EEEEe
Confidence 99985
No 43
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.4e-30 Score=218.09 Aligned_cols=245 Identities=30% Similarity=0.456 Sum_probs=200.0
Q ss_pred cccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEee
Q 036510 6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK 85 (288)
Q Consensus 6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd 85 (288)
.+.+|.+.|.+++|+|++++|++++.|+.+++|++... +....+.+|...+..+.|.++ +++|++++.|+.+++|+
T Consensus 4 ~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~--~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~~~~i~i~~ 79 (289)
T cd00200 4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETG--ELLRTLKGHTGPVRDVAASAD--GTYLASGSSDKTIRLWD 79 (289)
T ss_pred HhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCC--CcEEEEecCCcceeEEEECCC--CCEEEEEcCCCeEEEEE
Confidence 35599999999999999999999999999999998643 356778889999999999864 68999999999999999
Q ss_pred cCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCc
Q 036510 86 EGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGA 165 (288)
Q Consensus 86 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~ 165 (288)
+.... ....+..|...+.++.|+|+ +.++++++.|+.|.+|+++.... ......|...+.++.|+|++
T Consensus 80 ~~~~~---~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~---- 147 (289)
T cd00200 80 LETGE---CVRTLTGHTSYVSSVAFSPD--GRILSSSSRDKTIKVWDVETGKC---LTTLRGHTDWVNSVAFSPDG---- 147 (289)
T ss_pred cCccc---ceEEEeccCCcEEEEEEcCC--CCEEEEecCCCeEEEEECCCcEE---EEEeccCCCcEEEEEEcCcC----
Confidence 97643 33456678889999999997 56778787899999999975432 23344788889999999975
Q ss_pred eecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecC
Q 036510 166 LVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVARE 245 (288)
Q Consensus 166 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~ 245 (288)
.++++++.|+.|++||++.+ +....+..|...|.++.|+|+. ..+++++.|+.|++||++..
T Consensus 148 ----------~~l~~~~~~~~i~i~d~~~~----~~~~~~~~~~~~i~~~~~~~~~----~~l~~~~~~~~i~i~d~~~~ 209 (289)
T cd00200 148 ----------TFVASSSQDGTIKLWDLRTG----KCVATLTGHTGEVNSVAFSPDG----EKLLSSSSDGTIKLWDLSTG 209 (289)
T ss_pred ----------CEEEEEcCCCcEEEEEcccc----ccceeEecCccccceEEECCCc----CEEEEecCCCcEEEEECCCC
Confidence 67777777999999999765 3344566788899999999974 57889999999999998753
Q ss_pred CCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510 246 GDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 246 ~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~ 287 (288)
. ....+..+..++.+++|+|++.++++++.|+.|++|+.
T Consensus 210 ~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~ 248 (289)
T cd00200 210 K---CLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDL 248 (289)
T ss_pred c---eecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEc
Confidence 2 11223355678999999999999999988999999995
No 44
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.7e-32 Score=225.52 Aligned_cols=261 Identities=24% Similarity=0.345 Sum_probs=195.6
Q ss_pred ccccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCC-CCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEE
Q 036510 5 KIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGN-NTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVII 83 (288)
Q Consensus 5 ~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~i 83 (288)
+++..|++.|.-++||++|+||||++.|.+.-+|++.. ...+.++++.+|..+|-.+.|||+ .++|++|+.|..+++
T Consensus 218 qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPD--dryLlaCg~~e~~~l 295 (519)
T KOG0293|consen 218 QILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPD--DRYLLACGFDEVLSL 295 (519)
T ss_pred hhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCC--CCeEEecCchHheee
Confidence 46778999999999999999999999999999998743 335678999999999999999976 799999999999999
Q ss_pred eecCCCCceEEeEEee-cCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCC--CCeeeEEeeccCCCCeeEEEeCCC
Q 036510 84 WKEGNSNEWIKDHVFE-DHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARAD--GGWDTSRIDQAHPVGVTSVSWAPS 160 (288)
Q Consensus 84 wd~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~--~~~~~~~~~~~~~~~v~~i~~~p~ 160 (288)
||+.++.. .+.++ +|...+.+++|.|| +..+++|+.|+++..||+..+ ..|.-.+ ...|.+++..++
T Consensus 296 wDv~tgd~---~~~y~~~~~~S~~sc~W~pD--g~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr-----~~~v~dlait~D 365 (519)
T KOG0293|consen 296 WDVDTGDL---RHLYPSGLGFSVSSCAWCPD--GFRFVTGSPDRTIIMWDLDGNILGNWEGVR-----DPKVHDLAITYD 365 (519)
T ss_pred ccCCcchh---hhhcccCcCCCcceeEEccC--CceeEecCCCCcEEEecCCcchhhcccccc-----cceeEEEEEcCC
Confidence 99987763 33332 35678999999999 667999999999999998632 2222111 122455555555
Q ss_pred CCCCce---------------------------ecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcc--
Q 036510 161 TAPGAL---------------------------VGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDW-- 211 (288)
Q Consensus 161 ~~~~~~---------------------------~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~-- 211 (288)
+..-.. +..-.+.+++++.+.-.+..+.+||+.+. +.+..+.||+..
T Consensus 366 gk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~----~lv~kY~Ghkq~~f 441 (519)
T KOG0293|consen 366 GKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEEN----KLVRKYFGHKQGHF 441 (519)
T ss_pred CcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchh----hHHHHhhcccccce
Confidence 431110 11112345567777778889999999864 455566777653
Q ss_pred eEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCC-CEEEEEeCCCcEEEeEc
Q 036510 212 VRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTG-NILAVADGNNNVTLWEE 287 (288)
Q Consensus 212 V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg-~~l~s~~~d~~v~~w~~ 287 (288)
|-.-+|-- ....+++|||.|+.|+||+....+ ....+.+|...|++|+|+|.. .+||+|+.||+||||..
T Consensus 442 iIrSCFgg---~~~~fiaSGSED~kvyIWhr~sgk---ll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~ 512 (519)
T KOG0293|consen 442 IIRSCFGG---GNDKFIASGSEDSKVYIWHRISGK---LLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGP 512 (519)
T ss_pred EEEeccCC---CCcceEEecCCCceEEEEEccCCc---eeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecC
Confidence 22225533 235789999999999999976542 235567888899999999965 67999999999999974
No 45
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.4e-30 Score=204.08 Aligned_cols=232 Identities=20% Similarity=0.318 Sum_probs=187.0
Q ss_pred CCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCC
Q 036510 23 GKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHK 102 (288)
Q Consensus 23 g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~ 102 (288)
.-+|+|+|+|.+||+|.. .++.+.+++.-..+.|+.+...++ +..|+.++ ...||+||+.+.+.. ++.++.+|.
T Consensus 10 ~viLvsA~YDhTIRfWqa--~tG~C~rTiqh~dsqVNrLeiTpd--k~~LAaa~-~qhvRlyD~~S~np~-Pv~t~e~h~ 83 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQA--LTGICSRTIQHPDSQVNRLEITPD--KKDLAAAG-NQHVRLYDLNSNNPN-PVATFEGHT 83 (311)
T ss_pred ceEEEeccCcceeeeeeh--hcCeEEEEEecCccceeeEEEcCC--cchhhhcc-CCeeEEEEccCCCCC-ceeEEeccC
Confidence 358999999999999986 356889998877888999999764 56666655 488999999876643 456789999
Q ss_pred CceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEee
Q 036510 103 SSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGG 182 (288)
Q Consensus 103 ~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~ 182 (288)
+.|+++.|+-+ ++-+++|+.||+++|||+|.... + + .-.|+.+|.++...|+. ..|++|.
T Consensus 84 kNVtaVgF~~d--grWMyTgseDgt~kIWdlR~~~~-q--R-~~~~~spVn~vvlhpnQ--------------teLis~d 143 (311)
T KOG0315|consen 84 KNVTAVGFQCD--GRWMYTGSEDGTVKIWDLRSLSC-Q--R-NYQHNSPVNTVVLHPNQ--------------TELISGD 143 (311)
T ss_pred CceEEEEEeec--CeEEEecCCCceEEEEeccCccc-c--h-hccCCCCcceEEecCCc--------------ceEEeec
Confidence 99999999987 78899999999999999997432 1 1 22477899999999987 5689999
Q ss_pred cCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEee---cccc
Q 036510 183 CDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLH---DFKT 259 (288)
Q Consensus 183 ~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~---~~~~ 259 (288)
.++.|++||+.+.....+++++ -..+|.++...|+ +++++++..-|++.+|++-......+..+++ -|.+
T Consensus 144 qsg~irvWDl~~~~c~~~liPe---~~~~i~sl~v~~d----gsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~ 216 (311)
T KOG0315|consen 144 QSGNIRVWDLGENSCTHELIPE---DDTSIQSLTVMPD----GSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNG 216 (311)
T ss_pred CCCcEEEEEccCCccccccCCC---CCcceeeEEEcCC----CcEEEEecCCccEEEEEccCCCccccceEhhheecccc
Confidence 9999999999886543333332 2356899999998 4899999999999999987543333334443 3557
Q ss_pred CeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510 260 PVYRVSWSLTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 260 ~i~~~~~spdg~~l~s~~~d~~v~~w~~ 287 (288)
.+.++-+|||+++||++|+|.+|+||+.
T Consensus 217 ~il~C~lSPd~k~lat~ssdktv~iwn~ 244 (311)
T KOG0315|consen 217 HILRCLLSPDVKYLATCSSDKTVKIWNT 244 (311)
T ss_pred eEEEEEECCCCcEEEeecCCceEEEEec
Confidence 8999999999999999999999999985
No 46
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.4e-31 Score=230.30 Aligned_cols=247 Identities=18% Similarity=0.227 Sum_probs=213.5
Q ss_pred ccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeec
Q 036510 7 ETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE 86 (288)
Q Consensus 7 ~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~ 86 (288)
+..|.+.|-++.|.|....++++=+.|.|.||+.+.+ ..+.++.-..-+|.+..|-.- -+.+++||+|..|+|++.
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetq--tmVksfeV~~~PvRa~kfiaR--knWiv~GsDD~~IrVfny 84 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQ--TMVKSFEVSEVPVRAAKFIAR--KNWIVTGSDDMQIRVFNY 84 (794)
T ss_pred hhccCCceeeeecCCCCceEEEeeecCeeEEEecccc--eeeeeeeecccchhhheeeec--cceEEEecCCceEEEEec
Confidence 3458999999999999999999999999999998644 557777777888999998754 579999999999999998
Q ss_pred CCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCce
Q 036510 87 GNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGAL 166 (288)
Q Consensus 87 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~ 166 (288)
.+.. +++++..|.+-|.|++.||. .-++++++.|-+|++||.... |...+..++|.--|.++.|+|..+
T Consensus 85 nt~e---kV~~FeAH~DyIR~iavHPt--~P~vLtsSDDm~iKlW~we~~--wa~~qtfeGH~HyVMqv~fnPkD~---- 153 (794)
T KOG0276|consen 85 NTGE---KVKTFEAHSDYIRSIAVHPT--LPYVLTSSDDMTIKLWDWENE--WACEQTFEGHEHYVMQVAFNPKDP---- 153 (794)
T ss_pred ccce---eeEEeeccccceeeeeecCC--CCeEEecCCccEEEEeeccCc--eeeeeEEcCcceEEEEEEecCCCc----
Confidence 6654 78899999999999999997 346889999999999998753 666778889998999999999885
Q ss_pred ecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCC
Q 036510 167 VGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREG 246 (288)
Q Consensus 167 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~ 246 (288)
+.++|++-|++||+|.+... .+..++.+|...|+||+|-|-+ +.-+|+||++|.+|+|||.+.+.
T Consensus 154 ---------ntFaS~sLDrTVKVWslgs~----~~nfTl~gHekGVN~Vdyy~~g--dkpylIsgaDD~tiKvWDyQtk~ 218 (794)
T KOG0276|consen 154 ---------NTFASASLDRTVKVWSLGSP----HPNFTLEGHEKGVNCVDYYTGG--DKPYLISGADDLTIKVWDYQTKS 218 (794)
T ss_pred ---------cceeeeeccccEEEEEcCCC----CCceeeeccccCcceEEeccCC--CcceEEecCCCceEEEeecchHH
Confidence 78999999999999998765 3456789999999999999853 22389999999999999988642
Q ss_pred CcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510 247 DQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE 286 (288)
Q Consensus 247 ~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~ 286 (288)
..+++.+|...|..+.|+|.-.+|++||+||+||||.
T Consensus 219 ---CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWh 255 (794)
T KOG0276|consen 219 ---CVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWN 255 (794)
T ss_pred ---HHHHhhcccccceEEEecCCCcEEEEecCCccEEEec
Confidence 2355678888999999999999999999999999996
No 47
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.2e-31 Score=234.12 Aligned_cols=252 Identities=23% Similarity=0.321 Sum_probs=205.1
Q ss_pred ccccccccceEEEEE-cCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEE
Q 036510 5 KIETGHEDTVHDVAM-DYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVII 83 (288)
Q Consensus 5 ~~~~~h~~~v~~~~~-s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~i 83 (288)
+.+-|..+.|.+.+| .|..++|+.+.+.+.+|+|+.... ....+.||+..|.++.... .|.+|+|||.|+++++
T Consensus 317 k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~---~c~ii~GH~e~vlSL~~~~--~g~llat~sKD~svil 391 (775)
T KOG0319|consen 317 KQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTS---YCQIIPGHTEAVLSLDVWS--SGDLLATGSKDKSVIL 391 (775)
T ss_pred hhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCC---ceEEEeCchhheeeeeecc--cCcEEEEecCCceEEE
Confidence 445588899999996 577799999999999999987543 2347899999999999322 3789999999999999
Q ss_pred eecCCC-CceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCC--CCeeeEE----eeccCCCCeeEEE
Q 036510 84 WKEGNS-NEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARAD--GGWDTSR----IDQAHPVGVTSVS 156 (288)
Q Consensus 84 wd~~~~-~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~--~~~~~~~----~~~~~~~~v~~i~ 156 (288)
|.+.+. ....++....+|.+.|.+++++... ...+++++.|.+|++|+++.. ....... ....|...|.+++
T Consensus 392 Wr~~~~~~~~~~~a~~~gH~~svgava~~~~~-asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Va 470 (775)
T KOG0319|consen 392 WRLNNNCSKSLCVAQANGHTNSVGAVAGSKLG-ASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVA 470 (775)
T ss_pred EEecCCcchhhhhhhhcccccccceeeecccC-ccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceE
Confidence 988332 1122334456899999999997653 446899999999999999762 1111111 2347999999999
Q ss_pred eCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCc
Q 036510 157 WAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGK 236 (288)
Q Consensus 157 ~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~ 236 (288)
.+|+. .+++|||.|++.|||++... .....+.||+-.|+||.|+|. ++.++|+|.|.+
T Consensus 471 ia~nd--------------kLiAT~SqDktaKiW~le~~----~l~~vLsGH~RGvw~V~Fs~~----dq~laT~SgD~T 528 (775)
T KOG0319|consen 471 IAPND--------------KLIATGSQDKTAKIWDLEQL----RLLGVLSGHTRGVWCVSFSKN----DQLLATCSGDKT 528 (775)
T ss_pred ecCCC--------------ceEEecccccceeeecccCc----eEEEEeeCCccceEEEEeccc----cceeEeccCCce
Confidence 99987 78999999999999999853 567789999999999999997 478999999999
Q ss_pred EEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510 237 VIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 237 i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~ 287 (288)
||||.++.. ...+.+.+|.+.|..+.|--+|++|+|+++||.++||++
T Consensus 529 vKIW~is~f---SClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWni 576 (775)
T KOG0319|consen 529 VKIWSISTF---SCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNI 576 (775)
T ss_pred EEEEEeccc---eeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEec
Confidence 999999852 234566788899999999999999999999999999985
No 48
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=5.5e-31 Score=211.18 Aligned_cols=246 Identities=21% Similarity=0.302 Sum_probs=198.7
Q ss_pred cccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEee
Q 036510 6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK 85 (288)
Q Consensus 6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd 85 (288)
.+.||.++|..+.|.+|++.|+|+|.|++++.||.. ++++.+...+|..-|+.+.-+ .-...++.|++.|+++++||
T Consensus 85 ~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~--tG~~~rk~k~h~~~vNs~~p~-rrg~~lv~SgsdD~t~kl~D 161 (338)
T KOG0265|consen 85 VLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAE--TGKRIRKHKGHTSFVNSLDPS-RRGPQLVCSGSDDGTLKLWD 161 (338)
T ss_pred eeccccceeEeeeeccCCCEEEEecCCceEEEEecc--cceeeehhccccceeeecCcc-ccCCeEEEecCCCceEEEEe
Confidence 345999999999999999999999999999999984 457888899999999988732 22345778999999999999
Q ss_pred cCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCc
Q 036510 86 EGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGA 165 (288)
Q Consensus 86 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~ 165 (288)
++.... .+++ ..+.+++++.|.-. +..+.+|+-|+.|++||+|++.. ..++.+|.+.|+.+..+|.+
T Consensus 162 ~R~k~~---~~t~-~~kyqltAv~f~d~--s~qv~sggIdn~ikvWd~r~~d~---~~~lsGh~DtIt~lsls~~g---- 228 (338)
T KOG0265|consen 162 IRKKEA---IKTF-ENKYQLTAVGFKDT--SDQVISGGIDNDIKVWDLRKNDG---LYTLSGHADTITGLSLSRYG---- 228 (338)
T ss_pred ecccch---hhcc-ccceeEEEEEeccc--ccceeeccccCceeeeccccCcc---eEEeecccCceeeEEeccCC----
Confidence 987542 2333 24568899999855 55689999999999999987654 35668999999999999987
Q ss_pred eecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCc----ceEEEEecCCCCCCCcEEEEEeCCCcEEEEE
Q 036510 166 LVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTD----WVRDVAWAPNLGLPKSTIASASEDGKVIIWT 241 (288)
Q Consensus 166 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~----~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~ 241 (288)
.++.+-+-|+++++||++.-.....++..+.+|.. -...++|+|++ +.+.+|+.|+.+.+||
T Consensus 229 ----------s~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~----~~i~ags~dr~vyvwd 294 (338)
T KOG0265|consen 229 ----------SFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNG----TKITAGSADRFVYVWD 294 (338)
T ss_pred ----------CccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCC----CccccccccceEEEee
Confidence 67889999999999999863223345566665543 23456999984 6799999999999999
Q ss_pred eecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEE
Q 036510 242 VAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTL 284 (288)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~ 284 (288)
..... ....+-+|.+.|+.++|+|...+|.++++|++|.+
T Consensus 295 ~~~r~---~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 295 TTSRR---ILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred ccccc---EEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 87532 22344577889999999999999999999999976
No 49
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.2e-31 Score=235.17 Aligned_cols=247 Identities=21% Similarity=0.319 Sum_probs=200.9
Q ss_pred ccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeec
Q 036510 7 ETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE 86 (288)
Q Consensus 7 ~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~ 86 (288)
+..|+++|.++.|.|.+.+++|||.|.+|++|+... .+++.+|.||.+-|..+.|.|. -..++|+|+|.+|+||+.
T Consensus 47 FdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~--rrclftL~GHlDYVRt~~FHhe--yPWIlSASDDQTIrIWNw 122 (1202)
T KOG0292|consen 47 FDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT--RRCLFTLLGHLDYVRTVFFHHE--YPWILSASDDQTIRIWNW 122 (1202)
T ss_pred hhccCCccceeeecCCCCeEEecCCccEEEEEeccc--ceehhhhccccceeEEeeccCC--CceEEEccCCCeEEEEec
Confidence 458999999999999999999999999999999853 4789999999999999999653 569999999999999999
Q ss_pred CCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecC-------CC---------C----------ee
Q 036510 87 GNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARA-------DG---------G----------WD 140 (288)
Q Consensus 87 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~-------~~---------~----------~~ 140 (288)
.+.+ ++..+.+|..-|+|..|||. ..++++++.|.+||+||+.- ++ + .-
T Consensus 123 qsr~---~iavltGHnHYVMcAqFhpt--EDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaV 197 (1202)
T KOG0292|consen 123 QSRK---CIAVLTGHNHYVMCAQFHPT--EDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAV 197 (1202)
T ss_pred cCCc---eEEEEecCceEEEeeccCCc--cceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCee
Confidence 8776 45678899999999999997 35799999999999999841 01 0 01
Q ss_pred eEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCC-ceeeeeeeccccCCcceEEEEecC
Q 036510 141 TSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNG-IWKMDCFPALQMHTDWVRDVAWAP 219 (288)
Q Consensus 141 ~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~h~~~V~~v~~sp 219 (288)
...++++|..+|.-++|.|.- -+++||+.|+.||+|.+.+. .|+ +.+..||.+.|.++-|+|
T Consensus 198 VK~VLEGHDRGVNwaAfhpTl--------------pliVSG~DDRqVKlWrmnetKaWE---vDtcrgH~nnVssvlfhp 260 (1202)
T KOG0292|consen 198 VKHVLEGHDRGVNWAAFHPTL--------------PLIVSGADDRQVKLWRMNETKAWE---VDTCRGHYNNVSSVLFHP 260 (1202)
T ss_pred eeeeecccccccceEEecCCc--------------ceEEecCCcceeeEEEecccccee---ehhhhcccCCcceEEecC
Confidence 123578999999999999976 46999999999999999653 333 446789999999999999
Q ss_pred CCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510 220 NLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 220 ~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~ 287 (288)
. ..+|+|.|.|++|++||.++... ...+.--...-+.++-+|..++||.| +|+-+-|++.
T Consensus 261 ~----q~lIlSnsEDksirVwDm~kRt~---v~tfrrendRFW~laahP~lNLfAAg-HDsGm~VFkl 320 (1202)
T KOG0292|consen 261 H----QDLILSNSEDKSIRVWDMTKRTS---VQTFRRENDRFWILAAHPELNLFAAG-HDSGMIVFKL 320 (1202)
T ss_pred c----cceeEecCCCccEEEEecccccc---eeeeeccCCeEEEEEecCCcceeeee-cCCceEEEEE
Confidence 5 36899999999999999986421 12211113456779999999999977 6666667763
No 50
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=7.3e-30 Score=213.81 Aligned_cols=244 Identities=31% Similarity=0.520 Sum_probs=199.4
Q ss_pred cccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEee
Q 036510 6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK 85 (288)
Q Consensus 6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd 85 (288)
...+|...+..+.|++++++|++++.|+.+++|++... +.+..+.+|...+.++.|+++ +.++++++.|+.+++|+
T Consensus 46 ~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~--~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~i~~~~ 121 (289)
T cd00200 46 TLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETG--ECVRTLTGHTSYVSSVAFSPD--GRILSSSSRDKTIKVWD 121 (289)
T ss_pred EEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcc--cceEEEeccCCcEEEEEEcCC--CCEEEEecCCCeEEEEE
Confidence 45578889999999999999999999999999998643 456778889999999999864 67888888899999999
Q ss_pred cCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCc
Q 036510 86 EGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGA 165 (288)
Q Consensus 86 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~ 165 (288)
+.+.. ....+..|...+.++.|+|+ +.++++++.|+.|++||++..... .....|...+.++.|+|++
T Consensus 122 ~~~~~---~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~~~~i~i~d~~~~~~~---~~~~~~~~~i~~~~~~~~~---- 189 (289)
T cd00200 122 VETGK---CLTTLRGHTDWVNSVAFSPD--GTFVASSSQDGTIKLWDLRTGKCV---ATLTGHTGEVNSVAFSPDG---- 189 (289)
T ss_pred CCCcE---EEEEeccCCCcEEEEEEcCc--CCEEEEEcCCCcEEEEEccccccc---eeEecCccccceEEECCCc----
Confidence 97543 34456678889999999997 567777877999999999765332 2334677789999999986
Q ss_pred eecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecC
Q 036510 166 LVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVARE 245 (288)
Q Consensus 166 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~ 245 (288)
+.+++++.|+.|++||+..+ +.+..+..|...|.++.|+|+ +.++++++.|+.|++|++...
T Consensus 190 ----------~~l~~~~~~~~i~i~d~~~~----~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~i~i~~~~~~ 251 (289)
T cd00200 190 ----------EKLLSSSSDGTIKLWDLSTG----KCLGTLRGHENGVNSVAFSPD----GYLLASGSEDGTIRVWDLRTG 251 (289)
T ss_pred ----------CEEEEecCCCcEEEEECCCC----ceecchhhcCCceEEEEEcCC----CcEEEEEcCCCcEEEEEcCCc
Confidence 56888888999999999765 344556678889999999997 357888888999999998743
Q ss_pred CCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510 246 GDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE 286 (288)
Q Consensus 246 ~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~ 286 (288)
. ....+..+...|.+++|+|++++|++++.|+.|++|+
T Consensus 252 ~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 252 E---CVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred e---eEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 2 1233445667899999999999999999999999996
No 51
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=3.4e-30 Score=220.13 Aligned_cols=249 Identities=19% Similarity=0.351 Sum_probs=200.3
Q ss_pred cccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCC----CcE
Q 036510 6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFD----GTV 81 (288)
Q Consensus 6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d----~~v 81 (288)
+.+.|.-+++-++++|.|-|++||...|+|||||......-+...+..-.++|..|+|+.+ +..++..++. |.+
T Consensus 54 iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~d--s~RI~avGEGrerfg~~ 131 (603)
T KOG0318|consen 54 IYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFD--SKRIAAVGEGRERFGHV 131 (603)
T ss_pred eeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCC--CcEEEEEecCccceeEE
Confidence 5668988999899999999999999999999999875444445666777889999999865 7778777653 345
Q ss_pred EEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCC
Q 036510 82 IIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPST 161 (288)
Q Consensus 82 ~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~ 161 (288)
-+||..+. +..+.+|...|++++|-|.+ ...+++|+.|+.+.+|.=. .+.-......|...|.++.|+|++
T Consensus 132 F~~DSG~S-----vGei~GhSr~ins~~~KpsR-PfRi~T~sdDn~v~ffeGP---PFKFk~s~r~HskFV~~VRysPDG 202 (603)
T KOG0318|consen 132 FLWDSGNS-----VGEITGHSRRINSVDFKPSR-PFRIATGSDDNTVAFFEGP---PFKFKSSFREHSKFVNCVRYSPDG 202 (603)
T ss_pred EEecCCCc-----cceeeccceeEeeeeccCCC-ceEEEeccCCCeEEEeeCC---CeeeeecccccccceeeEEECCCC
Confidence 67775432 34678999999999999975 6789999999999999532 221112345688899999999997
Q ss_pred CCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccc---cCCcceEEEEecCCCCCCCcEEEEEeCCCcEE
Q 036510 162 APGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQ---MHTDWVRDVAWAPNLGLPKSTIASASEDGKVI 238 (288)
Q Consensus 162 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~---~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~ 238 (288)
.+++|.+.|+.|.|||=.+++ .+..+. +|++.|.+++|+||+ ++|+|+|.|+++|
T Consensus 203 --------------~~Fat~gsDgki~iyDGktge----~vg~l~~~~aHkGsIfalsWsPDs----~~~~T~SaDkt~K 260 (603)
T KOG0318|consen 203 --------------SRFATAGSDGKIYIYDGKTGE----KVGELEDSDAHKGSIFALSWSPDS----TQFLTVSADKTIK 260 (603)
T ss_pred --------------CeEEEecCCccEEEEcCCCcc----EEEEecCCCCccccEEEEEECCCC----ceEEEecCCceEE
Confidence 789999999999999988873 344444 899999999999985 7899999999999
Q ss_pred EEEeecCCC----------------------------------------cccceEeeccccCeEEEEeecCCCEEEEEeC
Q 036510 239 IWTVAREGD----------------------------------------QWEGKVLHDFKTPVYRVSWSLTGNILAVADG 278 (288)
Q Consensus 239 iw~~~~~~~----------------------------------------~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~ 278 (288)
|||+....- ......+++|.+.|++++-+|||++|.+|+.
T Consensus 261 IWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~Sgsy 340 (603)
T KOG0318|consen 261 IWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSY 340 (603)
T ss_pred EEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeecc
Confidence 999986420 0111233467788999999999999999999
Q ss_pred CCcEEEeEc
Q 036510 279 NNNVTLWEE 287 (288)
Q Consensus 279 d~~v~~w~~ 287 (288)
||.|.=|+.
T Consensus 341 DG~I~~W~~ 349 (603)
T KOG0318|consen 341 DGHINSWDS 349 (603)
T ss_pred CceEEEEec
Confidence 999999985
No 52
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.2e-31 Score=239.16 Aligned_cols=247 Identities=17% Similarity=0.277 Sum_probs=208.8
Q ss_pred cccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCC
Q 036510 10 HEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNS 89 (288)
Q Consensus 10 h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~ 89 (288)
-...|-+++|.|.-.+++++=..|.|++||.... .++..+..|.++|.++.|.+. ..+|+||++|-.|++|+..+.
T Consensus 8 kSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~--tli~rFdeHdGpVRgv~FH~~--qplFVSGGDDykIkVWnYk~r 83 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMG--TLIDRFDEHDGPVRGVDFHPT--QPLFVSGGDDYKIKVWNYKTR 83 (1202)
T ss_pred ccccccceecCCCCCEEEEeecCceeeeehhhhh--hHHhhhhccCCccceeeecCC--CCeEEecCCccEEEEEecccc
Confidence 3567889999999999999999999999999754 568889999999999999654 679999999999999999765
Q ss_pred CceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecc
Q 036510 90 NEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGS 169 (288)
Q Consensus 90 ~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~ 169 (288)
. +..++.+|.+-|..+.||+.- --+++++.|++|+||+..+.... .++.+|+--|.|..|.|..
T Consensus 84 r---clftL~GHlDYVRt~~FHhey--PWIlSASDDQTIrIWNwqsr~~i---avltGHnHYVMcAqFhptE-------- 147 (1202)
T KOG0292|consen 84 R---CLFTLLGHLDYVRTVFFHHEY--PWILSASDDQTIRIWNWQSRKCI---AVLTGHNHYVMCAQFHPTE-------- 147 (1202)
T ss_pred e---ehhhhccccceeEEeeccCCC--ceEEEccCCCeEEEEeccCCceE---EEEecCceEEEeeccCCcc--------
Confidence 4 456788999999999999863 24789999999999998876543 4567888889999999976
Q ss_pred cccCCCceeEEeecCCcEEEEEEeC--------C--------------ce---eeeeeeccccCCcceEEEEecCCCCCC
Q 036510 170 GFLDPVQKLCSGGCDNTVKVWKLYN--------G--------------IW---KMDCFPALQMHTDWVRDVAWAPNLGLP 224 (288)
Q Consensus 170 ~~~~~~~~l~s~~~d~~i~iwd~~~--------~--------------~~---~~~~~~~~~~h~~~V~~v~~sp~~~~~ 224 (288)
.+++|+|-|.+||+||+.. + .+ ..-..+.+.||+-.|+-++|+|..
T Consensus 148 ------DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTl--- 218 (1202)
T KOG0292|consen 148 ------DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTL--- 218 (1202)
T ss_pred ------ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCc---
Confidence 7899999999999999842 1 00 111234578999999999999975
Q ss_pred CcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510 225 KSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 225 ~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~ 287 (288)
-+||||++|+.|++|..+..+ -|+....-+|.++|.++-|+|....++|.|+|++|||||+
T Consensus 219 -pliVSG~DDRqVKlWrmnetK-aWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm 279 (1202)
T KOG0292|consen 219 -PLIVSGADDRQVKLWRMNETK-AWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDM 279 (1202)
T ss_pred -ceEEecCCcceeeEEEecccc-ceeehhhhcccCCcceEEecCccceeEecCCCccEEEEec
Confidence 379999999999999987543 4666666788899999999999999999999999999996
No 53
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.98 E-value=2.8e-30 Score=211.87 Aligned_cols=250 Identities=20% Similarity=0.354 Sum_probs=198.2
Q ss_pred cccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEee
Q 036510 6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK 85 (288)
Q Consensus 6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd 85 (288)
.+..|++.|++++++|+.+++++||.|....||+...+ +....+.+|+++|.++.|+++ |.+||||..+|.|+||.
T Consensus 59 tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~g--e~~~eltgHKDSVt~~~Fshd--gtlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTG--EFAGELTGHKDSVTCCSFSHD--GTLLATGDMSGKVLVFK 134 (399)
T ss_pred ehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCC--cceeEecCCCCceEEEEEccC--ceEEEecCCCccEEEEE
Confidence 35689999999999999999999999999999998644 578899999999999999986 99999999999999999
Q ss_pred cCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCc
Q 036510 86 EGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGA 165 (288)
Q Consensus 86 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~ 165 (288)
..++.. ...+......+-.+.|||. +..|++|+.||.+..|.+.+.. ..+++.+|+.++++=.|.|++
T Consensus 135 ~stg~~---~~~~~~e~~dieWl~WHp~--a~illAG~~DGsvWmw~ip~~~---~~kv~~Gh~~~ct~G~f~pdG---- 202 (399)
T KOG0296|consen 135 VSTGGE---QWKLDQEVEDIEWLKWHPR--AHILLAGSTDGSVWMWQIPSQA---LCKVMSGHNSPCTCGEFIPDG---- 202 (399)
T ss_pred cccCce---EEEeecccCceEEEEeccc--ccEEEeecCCCcEEEEECCCcc---eeeEecCCCCCcccccccCCC----
Confidence 987653 2334345567889999995 7889999999999999997642 345677899988888888886
Q ss_pred eecccccCCCceeEEeecCCcEEEEEEeCCceeeee---------------------------------------eeccc
Q 036510 166 LVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDC---------------------------------------FPALQ 206 (288)
Q Consensus 166 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---------------------------------------~~~~~ 206 (288)
++++++..|++|++||..+++...+. +....
T Consensus 203 ----------Kr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n 272 (399)
T KOG0296|consen 203 ----------KRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNN 272 (399)
T ss_pred ----------ceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecC
Confidence 78999999999999999765321110 00111
Q ss_pred --------cCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeC
Q 036510 207 --------MHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADG 278 (288)
Q Consensus 207 --------~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~ 278 (288)
.+...+.||.|.|...- -.+.|.|+-||+|-|||+..- ..+..-+|..+|+.+.|-+ ..+|++++.
T Consensus 273 ~~~~~l~~~~e~~~esve~~~~ss~-lpL~A~G~vdG~i~iyD~a~~----~~R~~c~he~~V~~l~w~~-t~~l~t~c~ 346 (399)
T KOG0296|consen 273 GTVPELKPSQEELDESVESIPSSSK-LPLAACGSVDGTIAIYDLAAS----TLRHICEHEDGVTKLKWLN-TDYLLTACA 346 (399)
T ss_pred CCCccccccchhhhhhhhhcccccc-cchhhcccccceEEEEecccc----hhheeccCCCceEEEEEcC-cchheeecc
Confidence 34444556666654311 135788889999999998743 2344456778899999999 889999999
Q ss_pred CCcEEEeEc
Q 036510 279 NNNVTLWEE 287 (288)
Q Consensus 279 d~~v~~w~~ 287 (288)
||+|+.||-
T Consensus 347 ~g~v~~wDa 355 (399)
T KOG0296|consen 347 NGKVRQWDA 355 (399)
T ss_pred CceEEeeec
Confidence 999999994
No 54
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=1.7e-30 Score=204.13 Aligned_cols=243 Identities=18% Similarity=0.309 Sum_probs=189.0
Q ss_pred EEEEEcCC--CCEEEEee------CCCcEEEEEeCCCC-ceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEee
Q 036510 15 HDVAMDYY--GKRLATAS------SDYSIKIIGVGNNT-SQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK 85 (288)
Q Consensus 15 ~~~~~s~~--g~~l~s~~------~d~~i~lwd~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd 85 (288)
++++|||- ++++++++ ..|++.|.+++.+. ...+..+. -.+.+..++|++. ..+.+++++.||+++|||
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d-~~D~LfdV~Wse~-~e~~~~~a~GDGSLrl~d 89 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYD-TEDGLFDVAWSEN-HENQVIAASGDGSLRLFD 89 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeee-cccceeEeeecCC-CcceEEEEecCceEEEec
Confidence 57899984 54444333 35778888885332 23344444 3577999999965 467999999999999999
Q ss_pred cCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCc
Q 036510 86 EGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGA 165 (288)
Q Consensus 86 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~ 165 (288)
..... .+++.+++|...|.+++|++.. ...++++++|++|++|+...++.. +...+|..-|....|+|..+
T Consensus 90 ~~~~s--~Pi~~~kEH~~EV~Svdwn~~~-r~~~ltsSWD~TiKLW~~~r~~Sv---~Tf~gh~~~Iy~a~~sp~~~--- 160 (311)
T KOG0277|consen 90 LTMPS--KPIHKFKEHKREVYSVDWNTVR-RRIFLTSSWDGTIKLWDPNRPNSV---QTFNGHNSCIYQAAFSPHIP--- 160 (311)
T ss_pred cCCCC--cchhHHHhhhhheEEecccccc-ceeEEeeccCCceEeecCCCCcce---EeecCCccEEEEEecCCCCC---
Confidence 64332 2556788999999999999975 456777899999999998765443 44568999999999999875
Q ss_pred eecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecC
Q 036510 166 LVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVARE 245 (288)
Q Consensus 166 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~ 245 (288)
++++++|.|++++|||++... +. ..+..|...|.+..|+.. ....|+||+.|+.||+||++..
T Consensus 161 ----------nlfas~Sgd~~l~lwdvr~~g---k~-~~i~ah~~Eil~cdw~ky---~~~vl~Tg~vd~~vr~wDir~~ 223 (311)
T KOG0277|consen 161 ----------NLFASASGDGTLRLWDVRSPG---KF-MSIEAHNSEILCCDWSKY---NHNVLATGGVDNLVRGWDIRNL 223 (311)
T ss_pred ----------CeEEEccCCceEEEEEecCCC---ce-eEEEeccceeEeeccccc---CCcEEEecCCCceEEEEehhhc
Confidence 789999999999999998742 21 236779888999999975 3689999999999999999875
Q ss_pred CCcccceEeeccccCeEEEEeecC-CCEEEEEeCCCcEEEeEc
Q 036510 246 GDQWEGKVLHDFKTPVYRVSWSLT-GNILAVADGNNNVTLWEE 287 (288)
Q Consensus 246 ~~~~~~~~~~~~~~~i~~~~~spd-g~~l~s~~~d~~v~~w~~ 287 (288)
..+ ...+.+|+=.|..++|||- -..||+++-|-++||||.
T Consensus 224 r~p--l~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~ 264 (311)
T KOG0277|consen 224 RTP--LFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDP 264 (311)
T ss_pred ccc--ceeecCCceEEEEEecCcchhhHhhhccccceEEeccc
Confidence 433 2334566668999999996 578999999999999994
No 55
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=1.6e-30 Score=227.20 Aligned_cols=244 Identities=20% Similarity=0.379 Sum_probs=197.9
Q ss_pred ccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEec-cccCeEEEEecCCCCCCEEEEeeCCCcEEEee
Q 036510 7 ETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSG-HKGAVWEVAWAHPKFGSILASCSFDGTVIIWK 85 (288)
Q Consensus 7 ~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd 85 (288)
+.-++..|+++.|+++|++|+.|-.+|.|.|||.... +.+..+.+ |...|.+++|. +..+.+|+.|+.|..+|
T Consensus 213 ~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~--k~~~~~~~~h~~rvg~laW~----~~~lssGsr~~~I~~~d 286 (484)
T KOG0305|consen 213 CSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQ--KKTRTLRGSHASRVGSLAWN----SSVLSSGSRDGKILNHD 286 (484)
T ss_pred EecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhc--cccccccCCcCceeEEEecc----CceEEEecCCCcEEEEE
Confidence 3344889999999999999999999999999998543 55777888 99999999996 57899999999999999
Q ss_pred cCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCc
Q 036510 86 EGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGA 165 (288)
Q Consensus 86 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~ 165 (288)
++..... ..++.+|...|..++|+++ +.++|+|+.|+.+.|||..... +......|...|..++|+|...
T Consensus 287 vR~~~~~--~~~~~~H~qeVCgLkws~d--~~~lASGgnDN~~~Iwd~~~~~---p~~~~~~H~aAVKA~awcP~q~--- 356 (484)
T KOG0305|consen 287 VRISQHV--VSTLQGHRQEVCGLKWSPD--GNQLASGGNDNVVFIWDGLSPE---PKFTFTEHTAAVKALAWCPWQS--- 356 (484)
T ss_pred Eecchhh--hhhhhcccceeeeeEECCC--CCeeccCCCccceEeccCCCcc---ccEEEeccceeeeEeeeCCCcc---
Confidence 9876542 2247789999999999998 6789999999999999985432 2344567999999999999974
Q ss_pred eecccccCCCceeEEe--ecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEe-CCCcEEEEEe
Q 036510 166 LVGSGFLDPVQKLCSG--GCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASAS-EDGKVIIWTV 242 (288)
Q Consensus 166 ~~~~~~~~~~~~l~s~--~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s-~D~~i~iw~~ 242 (288)
.+||+| +.|++|++||..++. .+..+.. ...|.++.|++..+ .++++-+ .++.|.||+.
T Consensus 357 ----------~lLAsGGGs~D~~i~fwn~~~g~----~i~~vdt-gsQVcsL~Wsk~~k---Ei~sthG~s~n~i~lw~~ 418 (484)
T KOG0305|consen 357 ----------GLLATGGGSADRCIKFWNTNTGA----RIDSVDT-GSQVCSLIWSKKYK---ELLSTHGYSENQITLWKY 418 (484)
T ss_pred ----------CceEEcCCCcccEEEEEEcCCCc----Eeccccc-CCceeeEEEcCCCC---EEEEecCCCCCcEEEEec
Confidence 678876 559999999999873 3444332 34699999999742 2444444 3778999998
Q ss_pred ecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510 243 AREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~ 287 (288)
-+.. ....+.+|...|..+++||||+.+++|++|.++++|+.
T Consensus 419 ps~~---~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~ 460 (484)
T KOG0305|consen 419 PSMK---LVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNL 460 (484)
T ss_pred cccc---eeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccc
Confidence 6532 23456788889999999999999999999999999984
No 56
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.98 E-value=1.5e-31 Score=219.25 Aligned_cols=245 Identities=21% Similarity=0.332 Sum_probs=189.8
Q ss_pred ccccccceEEEEEcCCC-CEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEee
Q 036510 7 ETGHEDTVHDVAMDYYG-KRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK 85 (288)
Q Consensus 7 ~~~h~~~v~~~~~s~~g-~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd 85 (288)
+.||.++|++++=.|.. ..++||+.||.|+|||+.. ..++.++.+|.+.|.+|++.. +-+++++.|++|+.|.
T Consensus 62 L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsq--R~~~~~f~AH~G~V~Gi~v~~----~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 62 LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQ--RECIRTFKAHEGLVRGICVTQ----TSFFTVGDDKTVKQWK 135 (433)
T ss_pred ccccccccchhhcCcchhhhhhccccCceEEEEehhh--hhhhheeecccCceeeEEecc----cceEEecCCcceeeee
Confidence 47999999999988876 7799999999999999853 477899999999999999863 6799999999999997
Q ss_pred cCCC--------------------------Cc----eE-----EeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEE
Q 036510 86 EGNS--------------------------NE----WI-----KDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISV 130 (288)
Q Consensus 86 ~~~~--------------------------~~----~~-----~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i 130 (288)
+... ++ |. ++..+.--.+.|.+++|+|.+ ..+|++|+.|+.|.+
T Consensus 136 ~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvE-TsILas~~sDrsIvL 214 (433)
T KOG0268|consen 136 IDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVE-TSILASCASDRSIVL 214 (433)
T ss_pred ccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCc-chheeeeccCCceEE
Confidence 4210 00 00 011122233567788888886 457899999999999
Q ss_pred EeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCc
Q 036510 131 FTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTD 210 (288)
Q Consensus 131 ~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~ 210 (288)
||+|++..+..... +..-..|+|+|+. -.++++++|.++..+|++.-. +.+....+|-+
T Consensus 215 yD~R~~~Pl~KVi~----~mRTN~IswnPea--------------fnF~~a~ED~nlY~~DmR~l~---~p~~v~~dhvs 273 (433)
T KOG0268|consen 215 YDLRQASPLKKVIL----TMRTNTICWNPEA--------------FNFVAANEDHNLYTYDMRNLS---RPLNVHKDHVS 273 (433)
T ss_pred EecccCCccceeee----eccccceecCccc--------------cceeeccccccceehhhhhhc---ccchhhcccce
Confidence 99998765443322 2345679999954 458899999999999998632 34566789999
Q ss_pred ceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeecc-ccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510 211 WVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDF-KTPVYRVSWSLTGNILAVADGNNNVTLWE 286 (288)
Q Consensus 211 ~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~-~~~i~~~~~spdg~~l~s~~~d~~v~~w~ 286 (288)
.|.+|+|||.+ +-|||||.|++|+||..+... . -...+.- =..|.+++||.|.+++++||.|++||||+
T Consensus 274 AV~dVdfsptG----~EfvsgsyDksIRIf~~~~~~-S--RdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWk 343 (433)
T KOG0268|consen 274 AVMDVDFSPTG----QEFVSGSYDKSIRIFPVNHGH-S--RDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWK 343 (433)
T ss_pred eEEEeccCCCc----chhccccccceEEEeecCCCc-c--hhhhhHhhhheeeEEEEeccccEEEecCCCcceeeee
Confidence 99999999974 669999999999999887431 1 1111110 13689999999999999999999999997
No 57
>PTZ00421 coronin; Provisional
Probab=99.98 E-value=2.1e-29 Score=226.51 Aligned_cols=248 Identities=16% Similarity=0.254 Sum_probs=184.8
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCc--------e---eeEEEeccccCeEEEEecCCCCCCEEEEeeCCC
Q 036510 11 EDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTS--------Q---HLAKLSGHKGAVWEVAWAHPKFGSILASCSFDG 79 (288)
Q Consensus 11 ~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~--------~---~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~ 79 (288)
-..|.....++++..+++++.+.....|+..++.. + ....+.+|.+.|++++|++. ++++|++||.|+
T Consensus 20 ~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~-d~~~LaSgS~Dg 98 (493)
T PTZ00421 20 FLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPF-DPQKLFTASEDG 98 (493)
T ss_pred eeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCC-CCCEEEEEeCCC
Confidence 34455555677877788888888888887543210 0 01247799999999999862 478999999999
Q ss_pred cEEEeecCCCCc----eEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEE
Q 036510 80 TVIIWKEGNSNE----WIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSV 155 (288)
Q Consensus 80 ~v~iwd~~~~~~----~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i 155 (288)
+|++||+..... ......+.+|...|.+++|+|+. ..+|++|+.|++|+|||++++. ......+|...|.++
T Consensus 99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~-~~iLaSgs~DgtVrIWDl~tg~---~~~~l~~h~~~V~sl 174 (493)
T PTZ00421 99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA-MNVLASAGADMVVNVWDVERGK---AVEVIKCHSDQITSL 174 (493)
T ss_pred EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCC-CCEEEEEeCCCEEEEEECCCCe---EEEEEcCCCCceEEE
Confidence 999999865321 11345678899999999999974 3578999999999999998653 234456789999999
Q ss_pred EeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcc-eEEEEecCCCCCCCcEEEEEe--
Q 036510 156 SWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDW-VRDVAWAPNLGLPKSTIASAS-- 232 (288)
Q Consensus 156 ~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~-V~~v~~sp~~~~~~~~l~s~s-- 232 (288)
+|+|++ .+|++++.|++|+|||++++ +.+..+.+|.+. +..+.|.|+. .+|++++
T Consensus 175 a~spdG--------------~lLatgs~Dg~IrIwD~rsg----~~v~tl~~H~~~~~~~~~w~~~~----~~ivt~G~s 232 (493)
T PTZ00421 175 EWNLDG--------------SLLCTTSKDKKLNIIDPRDG----TIVSSVEAHASAKSQRCLWAKRK----DLIITLGCS 232 (493)
T ss_pred EEECCC--------------CEEEEecCCCEEEEEECCCC----cEEEEEecCCCCcceEEEEcCCC----CeEEEEecC
Confidence 999987 78999999999999999886 345566778764 4567888864 3555543
Q ss_pred --CCCcEEEEEeecCCCcccceEee-ccccCeEEEEeecCCCEEEEEe-CCCcEEEeEc
Q 036510 233 --EDGKVIIWTVAREGDQWEGKVLH-DFKTPVYRVSWSLTGNILAVAD-GNNNVTLWEE 287 (288)
Q Consensus 233 --~D~~i~iw~~~~~~~~~~~~~~~-~~~~~i~~~~~spdg~~l~s~~-~d~~v~~w~~ 287 (288)
.|+.|++||++....+. .... .....+....|+||+++|++|+ .|++|++||+
T Consensus 233 ~s~Dr~VklWDlr~~~~p~--~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl 289 (493)
T PTZ00421 233 KSQQRQIMLWDTRKMASPY--STVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFEL 289 (493)
T ss_pred CCCCCeEEEEeCCCCCCce--eEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEe
Confidence 48999999997543221 1111 1224566778999999999887 5999999995
No 58
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=5.8e-29 Score=225.06 Aligned_cols=229 Identities=16% Similarity=0.260 Sum_probs=170.0
Q ss_pred eeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCce-----EEeEEeecCCC
Q 036510 29 ASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEW-----IKDHVFEDHKS 103 (288)
Q Consensus 29 ~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~-----~~~~~~~~h~~ 103 (288)
|+.++.+++|+... ...+..+.+|.+.|.+++|++. .+.+|+|||.|++|+|||+...... .....+.+|..
T Consensus 50 GG~~gvI~L~~~~r--~~~v~~L~gH~~~V~~lafsP~-~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~ 126 (568)
T PTZ00420 50 GGLIGAIRLENQMR--KPPVIKLKGHTSSILDLQFNPC-FSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKK 126 (568)
T ss_pred CCceeEEEeeecCC--CceEEEEcCCCCCEEEEEEcCC-CCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCC
Confidence 56678899998743 3567889999999999999863 3689999999999999998753210 12335678999
Q ss_pred ceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeec
Q 036510 104 SVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGC 183 (288)
Q Consensus 104 ~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~ 183 (288)
.|.+++|+|++ ..++++++.|++|++||++.+... .. . .|...|.+++|+|++ .+|++++.
T Consensus 127 ~V~sVaf~P~g-~~iLaSgS~DgtIrIWDl~tg~~~--~~-i-~~~~~V~SlswspdG--------------~lLat~s~ 187 (568)
T PTZ00420 127 KISIIDWNPMN-YYIMCSSGFDSFVNIWDIENEKRA--FQ-I-NMPKKLSSLKWNIKG--------------NLLSGTCV 187 (568)
T ss_pred cEEEEEECCCC-CeEEEEEeCCCeEEEEECCCCcEE--EE-E-ecCCcEEEEEECCCC--------------CEEEEEec
Confidence 99999999984 346789999999999999876422 11 1 255679999999987 78899999
Q ss_pred CCcEEEEEEeCCceeeeeeeccccCCcceEEE-----EecCCCCCCCcEEEEEeCCC----cEEEEEeecCCCcccceEe
Q 036510 184 DNTVKVWKLYNGIWKMDCFPALQMHTDWVRDV-----AWAPNLGLPKSTIASASEDG----KVIIWTVAREGDQWEGKVL 254 (288)
Q Consensus 184 d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v-----~~sp~~~~~~~~l~s~s~D~----~i~iw~~~~~~~~~~~~~~ 254 (288)
|+.|+|||++++ +.+..+.+|.+.+.+. .|+++ +.+|++++.|+ +|+|||++....+.....+
T Consensus 188 D~~IrIwD~Rsg----~~i~tl~gH~g~~~s~~v~~~~fs~d----~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~l 259 (568)
T PTZ00420 188 GKHMHIIDPRKQ----EIASSFHIHDGGKNTKNIWIDGLGGD----DNYILSTGFSKNNMREMKLWDLKNTTSALVTMSI 259 (568)
T ss_pred CCEEEEEECCCC----cEEEEEecccCCceeEEEEeeeEcCC----CCEEEEEEcCCCCccEEEEEECCCCCCceEEEEe
Confidence 999999999886 3455677887754432 34565 36788888764 7999999854322111112
Q ss_pred eccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510 255 HDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 255 ~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~ 287 (288)
....+.+...-..++|.++++|+.|++|++|++
T Consensus 260 d~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~ 292 (568)
T PTZ00420 260 DNASAPLIPHYDESTGLIYLIGKGDGNCRYYQH 292 (568)
T ss_pred cCCccceEEeeeCCCCCEEEEEECCCeEEEEEc
Confidence 222334445555667999999999999999985
No 59
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=6.3e-30 Score=216.71 Aligned_cols=245 Identities=23% Similarity=0.316 Sum_probs=199.6
Q ss_pred CCCccccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcE
Q 036510 2 PPQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTV 81 (288)
Q Consensus 2 ~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v 81 (288)
.+.+.++-..+.|++++|..||++|++|...|.|+++|.. +...++++.+|+.+|..+.|++ .++..|++|++|+.+
T Consensus 59 ~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k--~r~iLR~~~ah~apv~~~~f~~-~d~t~l~s~sDd~v~ 135 (487)
T KOG0310|consen 59 SVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMK--SRVILRQLYAHQAPVHVTKFSP-QDNTMLVSGSDDKVV 135 (487)
T ss_pred hhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccc--cHHHHHHHhhccCceeEEEecc-cCCeEEEecCCCceE
Confidence 4555666778999999999999999999999999999953 3345788999999999999975 478999999999999
Q ss_pred EEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCC
Q 036510 82 IIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPST 161 (288)
Q Consensus 82 ~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~ 161 (288)
++||+.++. ....+.+|.+-|.|.+|+|.+ ...+++|+.||+|++||+|....+ ...-.|.-+|.++-+-|.+
T Consensus 136 k~~d~s~a~---v~~~l~~htDYVR~g~~~~~~-~hivvtGsYDg~vrl~DtR~~~~~---v~elnhg~pVe~vl~lpsg 208 (487)
T KOG0310|consen 136 KYWDLSTAY---VQAELSGHTDYVRCGDISPAN-DHIVVTGSYDGKVRLWDTRSLTSR---VVELNHGCPVESVLALPSG 208 (487)
T ss_pred EEEEcCCcE---EEEEecCCcceeEeeccccCC-CeEEEecCCCceEEEEEeccCCce---eEEecCCCceeeEEEcCCC
Confidence 999997654 244678999999999999975 568999999999999999875322 2223466778999888876
Q ss_pred CCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEE
Q 036510 162 APGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWT 241 (288)
Q Consensus 162 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~ 241 (288)
+++++++. +.||+||+.+|- +.+..+..|...|+|+++..++ +.|+|||-|+.+++||
T Consensus 209 --------------s~iasAgG-n~vkVWDl~~G~---qll~~~~~H~KtVTcL~l~s~~----~rLlS~sLD~~VKVfd 266 (487)
T KOG0310|consen 209 --------------SLIASAGG-NSVKVWDLTTGG---QLLTSMFNHNKTVTCLRLASDS----TRLLSGSLDRHVKVFD 266 (487)
T ss_pred --------------CEEEEcCC-CeEEEEEecCCc---eehhhhhcccceEEEEEeecCC----ceEeecccccceEEEE
Confidence 67888764 679999998763 2333444588899999999864 7899999999999999
Q ss_pred eecCCCcccceEee--ccccCeEEEEeecCCCEEEEEeCCCcEEE
Q 036510 242 VAREGDQWEGKVLH--DFKTPVYRVSWSLTGNILAVADGNNNVTL 284 (288)
Q Consensus 242 ~~~~~~~~~~~~~~--~~~~~i~~~~~spdg~~l~s~~~d~~v~~ 284 (288)
+..- +.++ .+.+||.+++.+||++.++.|-+||.+-+
T Consensus 267 ~t~~------Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 267 TTNY------KVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSI 305 (487)
T ss_pred ccce------EEEEeeecccceeeEEecCCCceEEEecccceeee
Confidence 6532 3333 45789999999999999999999998754
No 60
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=1.1e-29 Score=200.21 Aligned_cols=245 Identities=24% Similarity=0.381 Sum_probs=192.6
Q ss_pred ccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeec
Q 036510 7 ETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE 86 (288)
Q Consensus 7 ~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~ 86 (288)
+.+|.+.|.+|+|+-+|++|++|+.|+++.+|+++..+...-..+.+|.+.|-.++|.|. ....|++++.|++|++||.
T Consensus 16 ~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~-~~d~~atas~dk~ir~wd~ 94 (313)
T KOG1407|consen 16 LQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPK-HPDLFATASGDKTIRIWDI 94 (313)
T ss_pred hhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCC-CCcceEEecCCceEEEEEe
Confidence 458999999999999999999999999999999975432223446799999999999865 5789999999999999999
Q ss_pred CCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCC----------------------------
Q 036510 87 GNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGG---------------------------- 138 (288)
Q Consensus 87 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~---------------------------- 138 (288)
+.+++. ..+. .++.-.-+.|+|+ +.+++.++.|..|.+.|.++...
T Consensus 95 r~~k~~---~~i~-~~~eni~i~wsp~--g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~Gl 168 (313)
T KOG1407|consen 95 RSGKCT---ARIE-TKGENINITWSPD--GEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGL 168 (313)
T ss_pred ccCcEE---EEee-ccCcceEEEEcCC--CCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCC
Confidence 987743 2232 2334456788998 67888999999999998874211
Q ss_pred ----------eeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccC
Q 036510 139 ----------WDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMH 208 (288)
Q Consensus 139 ----------~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h 208 (288)
+.++...++|+....||.|+|++ ++|++|++|..+.|||+.+- -|...+.-+
T Consensus 169 G~v~ILsypsLkpv~si~AH~snCicI~f~p~G--------------ryfA~GsADAlvSLWD~~EL----iC~R~isRl 230 (313)
T KOG1407|consen 169 GCVEILSYPSLKPVQSIKAHPSNCICIEFDPDG--------------RYFATGSADALVSLWDVDEL----ICERCISRL 230 (313)
T ss_pred ceEEEEeccccccccccccCCcceEEEEECCCC--------------ceEeeccccceeeccChhHh----hhheeeccc
Confidence 01112245788888888888887 89999999999999999753 455666778
Q ss_pred CcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeec--cccCeEEEEeecCCCEEEEEeCC-------
Q 036510 209 TDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHD--FKTPVYRVSWSLTGNILAVADGN------- 279 (288)
Q Consensus 209 ~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~--~~~~i~~~~~spdg~~l~s~~~d------- 279 (288)
.-+|+.++||-+ +++||+||.|--|-|=+++.. ..+++ ..++...|+|+|.-.+||.+..|
T Consensus 231 dwpVRTlSFS~d----g~~lASaSEDh~IDIA~vetG------d~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk~~d~~r 300 (313)
T KOG1407|consen 231 DWPVRTLSFSHD----GRMLASASEDHFIDIAEVETG------DRVWEIPCEGPTFTVAWHPKRPLLAYACDDKDGDSNR 300 (313)
T ss_pred cCceEEEEeccC----cceeeccCccceEEeEecccC------CeEEEeeccCCceeEEecCCCceeeEEecCCCCcccc
Confidence 889999999998 479999999999888776543 22332 35789999999999999999765
Q ss_pred --CcEEEeE
Q 036510 280 --NNVTLWE 286 (288)
Q Consensus 280 --~~v~~w~ 286 (288)
|+|+++-
T Consensus 301 eag~vKiFG 309 (313)
T KOG1407|consen 301 EAGTVKIFG 309 (313)
T ss_pred ccceeEEec
Confidence 5677764
No 61
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=7.7e-30 Score=217.55 Aligned_cols=253 Identities=21% Similarity=0.325 Sum_probs=186.9
Q ss_pred cccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCc-------------------------ee-------------
Q 036510 6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTS-------------------------QH------------- 47 (288)
Q Consensus 6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~-------------------------~~------------- 47 (288)
.+.+|+..|..+.+.|.|.+|+|||.|.+|++||+.+... ..
T Consensus 162 ~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~ 241 (641)
T KOG0772|consen 162 QLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLL 241 (641)
T ss_pred eccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEE
Confidence 4568999999999999999999999999999999863211 00
Q ss_pred -------------------eEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceE---EeEEeecCCCce
Q 036510 48 -------------------LAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWI---KDHVFEDHKSSV 105 (288)
Q Consensus 48 -------------------~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~---~~~~~~~h~~~v 105 (288)
+....||...+++.+|.|. ..+.|+|||.||++|||++.+..... +.+.-.+-+-++
T Consensus 242 DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~-~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~ 320 (641)
T KOG0772|consen 242 DRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPD-NKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPV 320 (641)
T ss_pred ccCCceeeeeeccchhhhhhhccCCceeeeeccccccC-cccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCc
Confidence 0112279999999999654 57899999999999999986544221 111112344578
Q ss_pred eEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCC--CeeEEEeCCCCCCCceecccccCCCceeEEeec
Q 036510 106 NSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPV--GVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGC 183 (288)
Q Consensus 106 ~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~--~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~ 183 (288)
+++.|+|+ +.++|+|+.||.|.+|+.+.........+.++|.. .|+||.||+++ ++|+|-|.
T Consensus 321 tsC~~nrd--g~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg--------------~~LlSRg~ 384 (641)
T KOG0772|consen 321 TSCAWNRD--GKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDG--------------NYLLSRGF 384 (641)
T ss_pred eeeecCCC--cchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecccc--------------chhhhccC
Confidence 99999998 66799999999999999865332223345678877 89999999998 88999999
Q ss_pred CCcEEEEEEeCCceeeeeeeccccC--CcceEEEEecCCCCCCCcEEEEEeC------CCcEEEEEeecCCCcccceEee
Q 036510 184 DNTVKVWKLYNGIWKMDCFPALQMH--TDWVRDVAWAPNLGLPKSTIASASE------DGKVIIWTVAREGDQWEGKVLH 255 (288)
Q Consensus 184 d~~i~iwd~~~~~~~~~~~~~~~~h--~~~V~~v~~sp~~~~~~~~l~s~s~------D~~i~iw~~~~~~~~~~~~~~~ 255 (288)
|+++|+||++.-. +++....+- ..+-.+++|||+ .++|++|.. -+++.+||...-. ....+.
T Consensus 385 D~tLKvWDLrq~k---kpL~~~tgL~t~~~~tdc~FSPd----~kli~TGtS~~~~~~~g~L~f~d~~t~d---~v~ki~ 454 (641)
T KOG0772|consen 385 DDTLKVWDLRQFK---KPLNVRTGLPTPFPGTDCCFSPD----DKLILTGTSAPNGMTAGTLFFFDRMTLD---TVYKID 454 (641)
T ss_pred CCceeeeeccccc---cchhhhcCCCccCCCCccccCCC----ceEEEecccccCCCCCceEEEEecccee---eEEEec
Confidence 9999999998642 233332221 123467899998 467888853 4579999876421 112221
Q ss_pred ccccCeEEEEeecCCCEEEEEeCCCcEEEe
Q 036510 256 DFKTPVYRVSWSLTGNILAVADGNNNVTLW 285 (288)
Q Consensus 256 ~~~~~i~~~~~spdg~~l~s~~~d~~v~~w 285 (288)
-....|..+.|||.-++|.+|++||+++||
T Consensus 455 i~~aSvv~~~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 455 ISTASVVRCLWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred CCCceEEEEeecchhhheeeecCCCceEEE
Confidence 124678999999999999999999999987
No 62
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.2e-29 Score=219.03 Aligned_cols=241 Identities=26% Similarity=0.366 Sum_probs=199.0
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCC
Q 036510 11 EDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSN 90 (288)
Q Consensus 11 ~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~ 90 (288)
+-+|.+.+|-..-+++++|+.|..||+|+.. +.+.+.++.+|.+-|.+++. ||+ -.+++|+|+|-+||+||.. +
T Consensus 55 ~~PvRa~kfiaRknWiv~GsDD~~IrVfnyn--t~ekV~~FeAH~DyIR~iav-HPt-~P~vLtsSDDm~iKlW~we--~ 128 (794)
T KOG0276|consen 55 EVPVRAAKFIARKNWIVTGSDDMQIRVFNYN--TGEKVKTFEAHSDYIRSIAV-HPT-LPYVLTSSDDMTIKLWDWE--N 128 (794)
T ss_pred ccchhhheeeeccceEEEecCCceEEEEecc--cceeeEEeeccccceeeeee-cCC-CCeEEecCCccEEEEeecc--C
Confidence 4566666777667899999999999999984 55779999999999999997 444 4699999999999999986 4
Q ss_pred ceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceeccc
Q 036510 91 EWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSG 170 (288)
Q Consensus 91 ~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~ 170 (288)
.|.+..++.+|..-|++++|+|.+ ...+|+++.|++|++|.+.... +...+++|..+|.++.+-|.+-
T Consensus 129 ~wa~~qtfeGH~HyVMqv~fnPkD-~ntFaS~sLDrTVKVWslgs~~---~nfTl~gHekGVN~Vdyy~~gd-------- 196 (794)
T KOG0276|consen 129 EWACEQTFEGHEHYVMQVAFNPKD-PNTFASASLDRTVKVWSLGSPH---PNFTLEGHEKGVNCVDYYTGGD-------- 196 (794)
T ss_pred ceeeeeEEcCcceEEEEEEecCCC-ccceeeeeccccEEEEEcCCCC---CceeeeccccCcceEEeccCCC--------
Confidence 577888999999999999999986 4569999999999999987643 2345679999999999987651
Q ss_pred ccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCccc
Q 036510 171 FLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWE 250 (288)
Q Consensus 171 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~ 250 (288)
.-+|+||+.|.+||+||..+. .|++++.||.+-|+.+.|+|.. -.|+|||.||++|||+...-. .+
T Consensus 197 ----kpylIsgaDD~tiKvWDyQtk----~CV~TLeGHt~Nvs~v~fhp~l----piiisgsEDGTvriWhs~Ty~--lE 262 (794)
T KOG0276|consen 197 ----KPYLISGADDLTIKVWDYQTK----SCVQTLEGHTNNVSFVFFHPEL----PIIISGSEDGTVRIWNSKTYK--LE 262 (794)
T ss_pred ----cceEEecCCCceEEEeecchH----HHHHHhhcccccceEEEecCCC----cEEEEecCCccEEEecCccee--hh
Confidence 247999999999999999875 6899999999999999999986 479999999999999865432 12
Q ss_pred ceEeeccccCeEEEEeecCCCEEEEEeCCCcEEE
Q 036510 251 GKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTL 284 (288)
Q Consensus 251 ~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~ 284 (288)
..+..+ -..+++++-.+.+..+++|...|.|.|
T Consensus 263 ~tLn~g-leRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 263 KTLNYG-LERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred hhhhcC-CceEEEEeecCCCCeEEEeccCCcEEE
Confidence 222222 247899999999999999987777643
No 63
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=8.3e-30 Score=205.47 Aligned_cols=255 Identities=20% Similarity=0.294 Sum_probs=202.4
Q ss_pred cccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCC----------------CCceeeEEEeccccCeEEEEecCCCCC
Q 036510 6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGN----------------NTSQHLAKLSGHKGAVWEVAWAHPKFG 69 (288)
Q Consensus 6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~----------------~~~~~~~~~~~h~~~v~~~~~~~~~~~ 69 (288)
.++-|..++.+.+|++||.++++||.|.+|+|.|+.. ...+.++++..|.+.|+++.|.|. .
T Consensus 107 ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr--e 184 (430)
T KOG0640|consen 107 YLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR--E 184 (430)
T ss_pred EEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch--h
Confidence 4557999999999999999999999999999999851 012458999999999999999543 7
Q ss_pred CEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCC
Q 036510 70 SILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHP 149 (288)
Q Consensus 70 ~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~ 149 (288)
.+|+|+|.|++|+++|..........+.+ ....+|.+++|||. |.+++.|..-.++++||+.+-+++..-.....|+
T Consensus 185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPs--GefllvgTdHp~~rlYdv~T~QcfvsanPd~qht 261 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPS--GEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHT 261 (430)
T ss_pred heEEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCC--CceEEEecCCCceeEEeccceeEeeecCcccccc
Confidence 89999999999999998643211111222 23468999999998 7789999999999999998876655445567899
Q ss_pred CCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeecc-ccCCc-ceEEEEecCCCCCCCcE
Q 036510 150 VGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPAL-QMHTD-WVRDVAWAPNLGLPKST 227 (288)
Q Consensus 150 ~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~h~~-~V~~v~~sp~~~~~~~~ 227 (288)
..|+++.+++.+ ++.+|+|.||.|||||--.+ +|+.++ ..|.+ .|.+..|..++ ++
T Consensus 262 ~ai~~V~Ys~t~--------------~lYvTaSkDG~IklwDGVS~----rCv~t~~~AH~gsevcSa~Ftkn~----ky 319 (430)
T KOG0640|consen 262 GAITQVRYSSTG--------------SLYVTASKDGAIKLWDGVSN----RCVRTIGNAHGGSEVCSAVFTKNG----KY 319 (430)
T ss_pred cceeEEEecCCc--------------cEEEEeccCCcEEeeccccH----HHHHHHHhhcCCceeeeEEEccCC----eE
Confidence 999999999987 78999999999999996554 566666 45655 59999999984 78
Q ss_pred EEEEeCCCcEEEEEeecCCC--------------c--------ccce------------------------EeeccccCe
Q 036510 228 IASASEDGKVIIWTVAREGD--------------Q--------WEGK------------------------VLHDFKTPV 261 (288)
Q Consensus 228 l~s~s~D~~i~iw~~~~~~~--------------~--------~~~~------------------------~~~~~~~~i 261 (288)
|++.+.|..+++|.+....- . .+.. ..-+|.+.+
T Consensus 320 iLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~ 399 (430)
T KOG0640|consen 320 ILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAV 399 (430)
T ss_pred EeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCc
Confidence 99999999999999875320 0 0000 001456678
Q ss_pred EEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510 262 YRVSWSLTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 262 ~~~~~spdg~~l~s~~~d~~v~~w~~ 287 (288)
..+.-||.+.-|++++.|-.+|+|-.
T Consensus 400 R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 400 RWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred eEEEeCCCCCceeeecccceeeeeee
Confidence 88999999999999999999999974
No 64
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=4.8e-28 Score=187.72 Aligned_cols=252 Identities=22% Similarity=0.352 Sum_probs=194.0
Q ss_pred ccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCc---eeeEEEeccccCeEEEEecCCC--CCCEEEEeeC-CCc
Q 036510 7 ETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTS---QHLAKLSGHKGAVWEVAWAHPK--FGSILASCSF-DGT 80 (288)
Q Consensus 7 ~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~---~~~~~~~~h~~~v~~~~~~~~~--~~~~l~s~s~-d~~ 80 (288)
...|.+.|++.+|+|+|.+|++|++|++|++.-.++.+- -.-..+.-|.+.|..++|..++ .+.+|+++++ |-.
T Consensus 85 ~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~ 164 (350)
T KOG0641|consen 85 NKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCK 164 (350)
T ss_pred ccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcce
Confidence 347899999999999999999999999999986653321 1123467799999999997532 4667777665 444
Q ss_pred EEEeecCCCCceEEeEEeecCCCceeEE-EeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEee-c--c-CCCCeeEE
Q 036510 81 VIIWKEGNSNEWIKDHVFEDHKSSVNSI-DWAPHELGLCLACGSSDGNISVFTARADGGWDTSRID-Q--A-HPVGVTSV 155 (288)
Q Consensus 81 v~iwd~~~~~~~~~~~~~~~h~~~v~~l-~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~-~--~-~~~~v~~i 155 (288)
|.+=|-..+. ..+.+.+|.+.|.++ .|+ +..+++|++|++|++||+|-+...+.+... . + ....|.++
T Consensus 165 iy~tdc~~g~---~~~a~sghtghilalyswn----~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav 237 (350)
T KOG0641|consen 165 IYITDCGRGQ---GFHALSGHTGHILALYSWN----GAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAV 237 (350)
T ss_pred EEEeecCCCC---cceeecCCcccEEEEEEec----CcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEE
Confidence 4444544443 346688999999887 565 457999999999999999876443322110 1 1 12468888
Q ss_pred EeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCC
Q 036510 156 SWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDG 235 (288)
Q Consensus 156 ~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~ 235 (288)
...|.+ ++|++|.+|.++-+||++.+ ++++.+.-|...|+||.|+|. ..|++++|.|.
T Consensus 238 ~vdpsg--------------rll~sg~~dssc~lydirg~----r~iq~f~phsadir~vrfsp~----a~yllt~syd~ 295 (350)
T KOG0641|consen 238 AVDPSG--------------RLLASGHADSSCMLYDIRGG----RMIQRFHPHSADIRCVRFSPG----AHYLLTCSYDM 295 (350)
T ss_pred EECCCc--------------ceeeeccCCCceEEEEeeCC----ceeeeeCCCccceeEEEeCCC----ceEEEEecccc
Confidence 888887 78999999999999999987 567777889999999999996 47899999999
Q ss_pred cEEEEEeecCC-CcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510 236 KVIIWTVAREG-DQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 236 ~i~iw~~~~~~-~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~ 287 (288)
.|++=|++-.- .......+.+|+.++..+-|+|+.--|++.++|+++.+|-.
T Consensus 296 ~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 296 KIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWAL 348 (350)
T ss_pred eEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEecc
Confidence 99999987421 11223455788889999999999999999999999999964
No 65
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=4.9e-29 Score=220.75 Aligned_cols=246 Identities=24% Similarity=0.373 Sum_probs=192.9
Q ss_pred cccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCC--------------------------------------ceeeE
Q 036510 8 TGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNT--------------------------------------SQHLA 49 (288)
Q Consensus 8 ~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~--------------------------------------~~~~~ 49 (288)
.||...|.+++||.+...++||+. +++++|+.+... ...+.
T Consensus 370 ~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~E 448 (888)
T KOG0306|consen 370 GGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVE 448 (888)
T ss_pred ccchhheeEEEeecCceeeeecCC-CcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhh
Confidence 467777777777766655555543 366677654210 02234
Q ss_pred EEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCC----CCceEE------eEEeecCCCceeEEEeccCCCCeEE
Q 036510 50 KLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGN----SNEWIK------DHVFEDHKSSVNSIDWAPHELGLCL 119 (288)
Q Consensus 50 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~----~~~~~~------~~~~~~h~~~v~~l~~~p~~~~~~l 119 (288)
++.+|.+.||.++-+|+ +..+++||+|++|++||..- +.+..+ .+++. -.+.|.|++++|| +++|
T Consensus 449 ti~AHdgaIWsi~~~pD--~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe-l~ddvL~v~~Spd--gk~L 523 (888)
T KOG0306|consen 449 TIRAHDGAIWSISLSPD--NKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE-LEDDVLCVSVSPD--GKLL 523 (888)
T ss_pred hhhccccceeeeeecCC--CCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEe-ccccEEEEEEcCC--CcEE
Confidence 45589999999998865 88999999999999998631 111101 12232 3468999999998 7899
Q ss_pred EEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceee
Q 036510 120 ACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKM 199 (288)
Q Consensus 120 ~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~ 199 (288)
|.+=.|+++.+|-+.+- ..+..+-+|.-+|.|++.+|++ ++++|||+|++||||-+.-|
T Consensus 524 aVsLLdnTVkVyflDtl---KFflsLYGHkLPV~smDIS~DS--------------klivTgSADKnVKiWGLdFG---- 582 (888)
T KOG0306|consen 524 AVSLLDNTVKVYFLDTL---KFFLSLYGHKLPVLSMDISPDS--------------KLIVTGSADKNVKIWGLDFG---- 582 (888)
T ss_pred EEEeccCeEEEEEecce---eeeeeecccccceeEEeccCCc--------------CeEEeccCCCceEEeccccc----
Confidence 99999999999987642 2334567899999999999998 78999999999999999887
Q ss_pred eeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCC
Q 036510 200 DCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGN 279 (288)
Q Consensus 200 ~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d 279 (288)
+|..++-+|++.|.+|.|.|. ..++-|+|.|+.|+.||-.+ ......+.+|...|++++-+|+|.+++++|+|
T Consensus 583 DCHKS~fAHdDSvm~V~F~P~----~~~FFt~gKD~kvKqWDg~k---Fe~iq~L~~H~~ev~cLav~~~G~~vvs~shD 655 (888)
T KOG0306|consen 583 DCHKSFFAHDDSVMSVQFLPK----THLFFTCGKDGKVKQWDGEK---FEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHD 655 (888)
T ss_pred hhhhhhhcccCceeEEEEccc----ceeEEEecCcceEEeechhh---hhhheeeccchheeeeeEEcCCCCeEEeccCC
Confidence 688889999999999999996 36789999999999998763 23345667788899999999999999999999
Q ss_pred CcEEEeEc
Q 036510 280 NNVTLWEE 287 (288)
Q Consensus 280 ~~v~~w~~ 287 (288)
.+||+|..
T Consensus 656 ~sIRlwE~ 663 (888)
T KOG0306|consen 656 KSIRLWER 663 (888)
T ss_pred ceeEeeec
Confidence 99999973
No 66
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=3.9e-28 Score=218.35 Aligned_cols=232 Identities=19% Similarity=0.238 Sum_probs=169.8
Q ss_pred cccccccceEEEEEcC-CCCEEEEeeCCCcEEEEEeCCCC-----ceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCC
Q 036510 6 IETGHEDTVHDVAMDY-YGKRLATASSDYSIKIIGVGNNT-----SQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDG 79 (288)
Q Consensus 6 ~~~~h~~~v~~~~~s~-~g~~l~s~~~d~~i~lwd~~~~~-----~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~ 79 (288)
++.||++.|.+++|+| ++++|++||.|++|++||+.... ...+..+.+|...|.+++|++. .+.+|++++.|+
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~-~~~iLaSgs~Dg 148 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPS-AMNVLASAGADM 148 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcC-CCCEEEEEeCCC
Confidence 3569999999999999 88999999999999999985421 1356788999999999999764 357999999999
Q ss_pred cEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCC-eeEEEeC
Q 036510 80 TVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVG-VTSVSWA 158 (288)
Q Consensus 80 ~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~-v~~i~~~ 158 (288)
+|+|||+.++. ....+..|...|.+++|+|+ +.++++|+.|++|++||++++.. .....+|... ...+.|.
T Consensus 149 tVrIWDl~tg~---~~~~l~~h~~~V~sla~spd--G~lLatgs~Dg~IrIwD~rsg~~---v~tl~~H~~~~~~~~~w~ 220 (493)
T PTZ00421 149 VVNVWDVERGK---AVEVIKCHSDQITSLEWNLD--GSLLCTTSKDKKLNIIDPRDGTI---VSSVEAHASAKSQRCLWA 220 (493)
T ss_pred EEEEEECCCCe---EEEEEcCCCCceEEEEEECC--CCEEEEecCCCEEEEEECCCCcE---EEEEecCCCCcceEEEEc
Confidence 99999998654 34567789999999999998 67899999999999999987643 2234566543 4467788
Q ss_pred CCCCCCceecccccCCCceeEEee----cCCcEEEEEEeCCceeeeeeecccc-CCcceEEEEecCCCCCCCcEEEEEe-
Q 036510 159 PSTAPGALVGSGFLDPVQKLCSGG----CDNTVKVWKLYNGIWKMDCFPALQM-HTDWVRDVAWAPNLGLPKSTIASAS- 232 (288)
Q Consensus 159 p~~~~~~~~~~~~~~~~~~l~s~~----~d~~i~iwd~~~~~~~~~~~~~~~~-h~~~V~~v~~sp~~~~~~~~l~s~s- 232 (288)
|+. ..+++++ .|+.|++||++.... .+..... +...+....|+|+. ++|++|+
T Consensus 221 ~~~--------------~~ivt~G~s~s~Dr~VklWDlr~~~~---p~~~~~~d~~~~~~~~~~d~d~----~~L~lggk 279 (493)
T PTZ00421 221 KRK--------------DLIITLGCSKSQQRQIMLWDTRKMAS---PYSTVDLDQSSALFIPFFDEDT----NLLYIGSK 279 (493)
T ss_pred CCC--------------CeEEEEecCCCCCCeEEEEeCCCCCC---ceeEeccCCCCceEEEEEcCCC----CEEEEEEe
Confidence 765 3455443 478999999976421 1222222 23346666788874 5677776
Q ss_pred CCCcEEEEEeecCCCcccceEeeccccCeEEEEeecC
Q 036510 233 EDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLT 269 (288)
Q Consensus 233 ~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spd 269 (288)
.|++|++|++...... . ..-.....++..++|.|.
T Consensus 280 gDg~Iriwdl~~~~~~-~-~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 280 GEGNIRCFELMNERLT-F-CSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred CCCeEEEEEeeCCceE-E-EeeccCCCCCcceEeccc
Confidence 5999999999854211 1 111122345667777764
No 67
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.3e-28 Score=198.77 Aligned_cols=243 Identities=19% Similarity=0.292 Sum_probs=185.4
Q ss_pred CccccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEE
Q 036510 4 QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVII 83 (288)
Q Consensus 4 ~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~i 83 (288)
-..+..|...+++|+.+ |+|+||||.|.+|+|||... ...+..+..|.+.|+++.|.++.....|+||++||.|.|
T Consensus 36 lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k--~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~i 111 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRK--RKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIII 111 (362)
T ss_pred cccccccccceeEEEec--ceeEeccCCCCcEEEEeccc--hhhhcceeccccceEEEEecCCcchhheeeecCCCcEEE
Confidence 34567899999999998 89999999999999999853 466888899999999999998754558999999999999
Q ss_pred eecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCC
Q 036510 84 WKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAP 163 (288)
Q Consensus 84 wd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~ 163 (288)
|+.. .|.+..+++.|.+.|+.++.||. +++.++.+.|+.+++|++-++..--... + .+. -+.+.|+|.+
T Consensus 112 w~~~---~W~~~~slK~H~~~Vt~lsiHPS--~KLALsVg~D~~lr~WNLV~Gr~a~v~~-L-~~~--at~v~w~~~G-- 180 (362)
T KOG0294|consen 112 WRVG---SWELLKSLKAHKGQVTDLSIHPS--GKLALSVGGDQVLRTWNLVRGRVAFVLN-L-KNK--ATLVSWSPQG-- 180 (362)
T ss_pred EEcC---CeEEeeeecccccccceeEecCC--CceEEEEcCCceeeeehhhcCccceeec-c-CCc--ceeeEEcCCC--
Confidence 9864 47788999999999999999998 7888888999999999997654321111 1 121 3348999987
Q ss_pred CceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEee
Q 036510 164 GALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVA 243 (288)
Q Consensus 164 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~ 243 (288)
..++.++. +.|-+|.+... .....+. ..-.+.|+-|-. +.+|++|.+|+.|++||..
T Consensus 181 ------------d~F~v~~~-~~i~i~q~d~A----~v~~~i~-~~~r~l~~~~l~-----~~~L~vG~d~~~i~~~D~d 237 (362)
T KOG0294|consen 181 ------------DHFVVSGR-NKIDIYQLDNA----SVFREIE-NPKRILCATFLD-----GSELLVGGDNEWISLKDTD 237 (362)
T ss_pred ------------CEEEEEec-cEEEEEecccH----hHhhhhh-ccccceeeeecC-----CceEEEecCCceEEEeccC
Confidence 55565554 45778877653 1111111 113356666654 3689999999999999987
Q ss_pred cCCCcccceEeeccccCeEEEEe--ecCCCEEEEEeCCCcEEEeEc
Q 036510 244 REGDQWEGKVLHDFKTPVYRVSW--SLTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 244 ~~~~~~~~~~~~~~~~~i~~~~~--spdg~~l~s~~~d~~v~~w~~ 287 (288)
... ....+..|.+.|-++.+ +|++.+|+++|+||.|+|||+
T Consensus 238 s~~---~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~ 280 (362)
T KOG0294|consen 238 SDT---PLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDI 280 (362)
T ss_pred CCc---cceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEc
Confidence 532 12334556788888774 378999999999999999995
No 68
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=1.1e-28 Score=222.55 Aligned_cols=237 Identities=25% Similarity=0.365 Sum_probs=196.8
Q ss_pred ccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeec
Q 036510 7 ETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE 86 (288)
Q Consensus 7 ~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~ 86 (288)
+.||++.|.+++|...+.+|++|+.|.++++||. .++++..++.+|...|.++..- +.++++||.|.+|++|++
T Consensus 245 l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~--~sg~C~~~l~gh~stv~~~~~~----~~~~~sgs~D~tVkVW~v 318 (537)
T KOG0274|consen 245 LVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDC--STGECTHSLQGHTSSVRCLTID----PFLLVSGSRDNTVKVWDV 318 (537)
T ss_pred ccCCCCCceeEEEecCCCEEEEEecCCcEEeEec--CCCcEEEEecCCCceEEEEEcc----CceEeeccCCceEEEEec
Confidence 5699999999999887899999999999999996 4568999999999999988853 568899999999999999
Q ss_pred CCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCce
Q 036510 87 GNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGAL 166 (288)
Q Consensus 87 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~ 166 (288)
.++. ..+++.+|..+|+++..+ +.++++|+.|++|++|++++.. ....+++|...|.++.+.+.
T Consensus 319 ~n~~---~l~l~~~h~~~V~~v~~~----~~~lvsgs~d~~v~VW~~~~~~---cl~sl~gH~~~V~sl~~~~~------ 382 (537)
T KOG0274|consen 319 TNGA---CLNLLRGHTGPVNCVQLD----EPLLVSGSYDGTVKVWDPRTGK---CLKSLSGHTGRVYSLIVDSE------ 382 (537)
T ss_pred cCcc---eEEEeccccccEEEEEec----CCEEEEEecCceEEEEEhhhce---eeeeecCCcceEEEEEecCc------
Confidence 8765 556777799999999987 3478999999999999998643 34567789999999977652
Q ss_pred ecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCC
Q 036510 167 VGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREG 246 (288)
Q Consensus 167 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~ 246 (288)
..+++|+.|++|++||+++.. +|++.+.+|...|.++.+.. +.|++++.|++|++||....+
T Consensus 383 ---------~~~~Sgs~D~~IkvWdl~~~~---~c~~tl~~h~~~v~~l~~~~------~~Lvs~~aD~~Ik~WD~~~~~ 444 (537)
T KOG0274|consen 383 ---------NRLLSGSLDTTIKVWDLRTKR---KCIHTLQGHTSLVSSLLLRD------NFLVSSSADGTIKLWDAEEGE 444 (537)
T ss_pred ---------ceEEeeeeccceEeecCCchh---hhhhhhcCCccccccccccc------ceeEeccccccEEEeecccCc
Confidence 458999999999999998753 68889999999998777654 579999999999999987643
Q ss_pred CcccceEeec-cccCeEEEEeecCCCEEEEEeCCCcEEEeEcC
Q 036510 247 DQWEGKVLHD-FKTPVYRVSWSLTGNILAVADGNNNVTLWEEA 288 (288)
Q Consensus 247 ~~~~~~~~~~-~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~~ 288 (288)
. ...+.+ +...|..+++. -..+++++.|+++++||++
T Consensus 445 ~---~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~ 482 (537)
T KOG0274|consen 445 C---LRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLR 482 (537)
T ss_pred e---eeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecc
Confidence 1 233344 34567777765 5788889999999999963
No 69
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.97 E-value=2.3e-29 Score=211.73 Aligned_cols=220 Identities=27% Similarity=0.413 Sum_probs=182.2
Q ss_pred CCccccccccceEEEEEcCCC-CEEEEeeCCCcEEEEEeCCCC-----ceeeEEEeccccCeEEEEecCCCCCCEEEEee
Q 036510 3 PQKIETGHEDTVHDVAMDYYG-KRLATASSDYSIKIIGVGNNT-----SQHLAKLSGHKGAVWEVAWAHPKFGSILASCS 76 (288)
Q Consensus 3 ~~~~~~~h~~~v~~~~~s~~g-~~l~s~~~d~~i~lwd~~~~~-----~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s 76 (288)
|...+.||++.=++++|++.- -+|++++.|++|++||+.... ......+.+|.+.|..++|.+ ....+|++++
T Consensus 169 Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~-~h~~lF~sv~ 247 (422)
T KOG0264|consen 169 PDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHP-LHEDLFGSVG 247 (422)
T ss_pred CceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccc-cchhhheeec
Confidence 455677999977899999742 469999999999999996432 223567899999999999964 5678999999
Q ss_pred CCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEE
Q 036510 77 FDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVS 156 (288)
Q Consensus 77 ~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~ 156 (288)
+|+.+.|||.+.. +-...+....|..+|+|++|+|.+ ..+||+|+.|++|++||+|+... ++...++|...|.++.
T Consensus 248 dd~~L~iwD~R~~-~~~~~~~~~ah~~~vn~~~fnp~~-~~ilAT~S~D~tV~LwDlRnL~~--~lh~~e~H~dev~~V~ 323 (422)
T KOG0264|consen 248 DDGKLMIWDTRSN-TSKPSHSVKAHSAEVNCVAFNPFN-EFILATGSADKTVALWDLRNLNK--PLHTFEGHEDEVFQVE 323 (422)
T ss_pred CCCeEEEEEcCCC-CCCCcccccccCCceeEEEeCCCC-CceEEeccCCCcEEEeechhccc--CceeccCCCcceEEEE
Confidence 9999999999963 333456677899999999999986 77899999999999999997643 4567789999999999
Q ss_pred eCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCce----------eeeeeeccccCCcceEEEEecCCCCCCCc
Q 036510 157 WAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIW----------KMDCFPALQMHTDWVRDVAWAPNLGLPKS 226 (288)
Q Consensus 157 ~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~----------~~~~~~~~~~h~~~V~~v~~sp~~~~~~~ 226 (288)
|+|... ..|+|++.|+.+.+||+..-.. ..+++....||...|..+.|+|.. +-
T Consensus 324 WSPh~e-------------tvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~e---PW 387 (422)
T KOG0264|consen 324 WSPHNE-------------TVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNE---PW 387 (422)
T ss_pred eCCCCC-------------ceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCC---Ce
Confidence 999873 7899999999999999953110 123445568999999999999985 67
Q ss_pred EEEEEeCCCcEEEEEee
Q 036510 227 TIASASEDGKVIIWTVA 243 (288)
Q Consensus 227 ~l~s~s~D~~i~iw~~~ 243 (288)
.|+|++.|+.+.||+..
T Consensus 388 ~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 388 TIASVAEDNILQIWQMA 404 (422)
T ss_pred EEEEecCCceEEEeecc
Confidence 89999999999999876
No 70
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.4e-27 Score=190.85 Aligned_cols=253 Identities=13% Similarity=0.186 Sum_probs=189.3
Q ss_pred CCCCccccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeC--C
Q 036510 1 MPPQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSF--D 78 (288)
Q Consensus 1 ~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~--d 78 (288)
|-|.|.+......|.++.|+++|.+|++++.|.+++|||... ++.+.++..++..+..++|.+. ...++.+|. |
T Consensus 4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~--g~~~~ti~skkyG~~~~~Fth~--~~~~i~sStk~d 79 (311)
T KOG1446|consen 4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLS--GKQVKTINSKKYGVDLACFTHH--SNTVIHSSTKED 79 (311)
T ss_pred cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCC--CceeeEeecccccccEEEEecC--CceEEEccCCCC
Confidence 556677777789999999999999999999999999999854 4678889989999999999875 345555554 9
Q ss_pred CcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeC
Q 036510 79 GTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWA 158 (288)
Q Consensus 79 ~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~ 158 (288)
.+||.-++.+.. .++.+++|.+.|++|+.+|-+ ..+++++.|++|++||+|...+... .... .--.++|+
T Consensus 80 ~tIryLsl~dNk---ylRYF~GH~~~V~sL~~sP~~--d~FlS~S~D~tvrLWDlR~~~cqg~-l~~~----~~pi~AfD 149 (311)
T KOG1446|consen 80 DTIRYLSLHDNK---YLRYFPGHKKRVNSLSVSPKD--DTFLSSSLDKTVRLWDLRVKKCQGL-LNLS----GRPIAAFD 149 (311)
T ss_pred CceEEEEeecCc---eEEEcCCCCceEEEEEecCCC--CeEEecccCCeEEeeEecCCCCceE-EecC----CCcceeEC
Confidence 999999997755 567899999999999999984 6789999999999999996543222 1111 22346788
Q ss_pred CCCCCCceecccccCCCceeEEeecCCcEEEEEEeCC-ceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcE
Q 036510 159 PSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNG-IWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKV 237 (288)
Q Consensus 159 p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i 237 (288)
|++ -++|.+...+.|+|||++.- .-++........-....+.+.|||++ ++++-....+.+
T Consensus 150 p~G--------------LifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dG----K~iLlsT~~s~~ 211 (311)
T KOG1446|consen 150 PEG--------------LIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDG----KSILLSTNASFI 211 (311)
T ss_pred CCC--------------cEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCC----CEEEEEeCCCcE
Confidence 887 56778877779999999752 11111111111223356999999985 677788888889
Q ss_pred EEEEeecCCCcccceEeeccc---cCeEEEEeecCCCEEEEEeCCCcEEEeEcC
Q 036510 238 IIWTVAREGDQWEGKVLHDFK---TPVYRVSWSLTGNILAVADGNNNVTLWEEA 288 (288)
Q Consensus 238 ~iw~~~~~~~~~~~~~~~~~~---~~i~~~~~spdg~~l~s~~~d~~v~~w~~~ 288 (288)
.+.|.-.... ...+.++. +--.+++|+||++++++|+.||+|++|+.+
T Consensus 212 ~~lDAf~G~~---~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~ 262 (311)
T KOG1446|consen 212 YLLDAFDGTV---KSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLE 262 (311)
T ss_pred EEEEccCCcE---eeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcC
Confidence 9998765421 12222222 123689999999999999999999999853
No 71
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=2.6e-28 Score=224.08 Aligned_cols=255 Identities=26% Similarity=0.396 Sum_probs=204.1
Q ss_pred ccccceEEEEEcCCCCEEEEee--CCCcEEEEEeCC---------C-CceeeEEEeccccCeEEEEecCCCCCCEEEEee
Q 036510 9 GHEDTVHDVAMDYYGKRLATAS--SDYSIKIIGVGN---------N-TSQHLAKLSGHKGAVWEVAWAHPKFGSILASCS 76 (288)
Q Consensus 9 ~h~~~v~~~~~s~~g~~l~s~~--~d~~i~lwd~~~---------~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s 76 (288)
+++..|++|..+|+|..++||+ .|+.+++|..+. . -.+.+.++..|.+.|+++.|+++ |.+||+||
T Consensus 11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~d--G~~lAsGS 88 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPD--GSYLASGS 88 (942)
T ss_pred cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCC--CCeEeecc
Confidence 4578899999999999999999 999999997531 1 13567888999999999999975 99999999
Q ss_pred CCCcEEEeecCC---------------CCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeee
Q 036510 77 FDGTVIIWKEGN---------------SNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDT 141 (288)
Q Consensus 77 ~d~~v~iwd~~~---------------~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~ 141 (288)
+|+.|.||+... .+.|.....+.+|...|..+.|+|+ +.++++++.|++|.||+.++. ..
T Consensus 89 DD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~--~~~lvS~s~DnsViiwn~~tF---~~ 163 (942)
T KOG0973|consen 89 DDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPD--DSLLVSVSLDNSVIIWNAKTF---EL 163 (942)
T ss_pred CcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCC--ccEEEEecccceEEEEccccc---ee
Confidence 999999998752 0135566778899999999999997 678999999999999998764 44
Q ss_pred EEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeC--------Cce----------------
Q 036510 142 SRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYN--------GIW---------------- 197 (288)
Q Consensus 142 ~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--------~~~---------------- 197 (288)
..+..+|...|.-+.|.|.+ ++|+|-+.|++|++|++.+ +.+
T Consensus 164 ~~vl~~H~s~VKGvs~DP~G--------------ky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSP 229 (942)
T KOG0973|consen 164 LKVLRGHQSLVKGVSWDPIG--------------KYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSP 229 (942)
T ss_pred eeeeecccccccceEECCcc--------------CeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCC
Confidence 56778999999999999987 8999999999999999521 000
Q ss_pred ----------------ee--------eeeeccccCCcceEEEEecCCCC---C------CC----cEEEEEeCCCcEEEE
Q 036510 198 ----------------KM--------DCFPALQMHTDWVRDVAWAPNLG---L------PK----STIASASEDGKVIIW 240 (288)
Q Consensus 198 ----------------~~--------~~~~~~~~h~~~V~~v~~sp~~~---~------~~----~~l~s~s~D~~i~iw 240 (288)
.. +.-..+.||..+|.+|.|+|..- . .+ ..+|+||.|++|-||
T Consensus 230 DG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW 309 (942)
T KOG0973|consen 230 DGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVW 309 (942)
T ss_pred CcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEE
Confidence 00 11224679999999999999420 0 01 268999999999999
Q ss_pred EeecCCCcccceEeec-cccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510 241 TVAREGDQWEGKVLHD-FKTPVYRVSWSLTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 241 ~~~~~~~~~~~~~~~~-~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~ 287 (288)
...... + .-.++. +...|..++|+|||-.|.++|-||+|.+..+
T Consensus 310 ~T~~~R-P--l~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~F 354 (942)
T KOG0973|consen 310 NTALPR-P--LFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHF 354 (942)
T ss_pred ecCCCC-c--hhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEc
Confidence 875432 1 111222 3568999999999999999999999999874
No 72
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=3.6e-28 Score=195.19 Aligned_cols=246 Identities=20% Similarity=0.270 Sum_probs=183.2
Q ss_pred cccccceEEEEEcC-CCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeec
Q 036510 8 TGHEDTVHDVAMDY-YGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE 86 (288)
Q Consensus 8 ~~h~~~v~~~~~s~-~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~ 86 (288)
..-++.|..|+||| ...+++++|+|++||+|++.......-.....|.++|.+++|+.+ |..+++|+.|+++++||+
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsdd--gskVf~g~~Dk~~k~wDL 101 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDD--GSKVFSGGCDKQAKLWDL 101 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccC--CceEEeeccCCceEEEEc
Confidence 34578999999999 456677999999999999975311112445679999999999854 899999999999999999
Q ss_pred CCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCce
Q 036510 87 GNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGAL 166 (288)
Q Consensus 87 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~ 166 (288)
.++. ...+..|..+|.++.|-+.....+|++|++|++|+.||+|........ .-+..+.+++.
T Consensus 102 ~S~Q----~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~----~LPeRvYa~Dv--------- 164 (347)
T KOG0647|consen 102 ASGQ----VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATL----QLPERVYAADV--------- 164 (347)
T ss_pred cCCC----eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeee----eccceeeehhc---------
Confidence 8763 455778999999999987654457999999999999999965433221 12334444432
Q ss_pred ecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCC
Q 036510 167 VGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREG 246 (288)
Q Consensus 167 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~ 246 (288)
.. -+++.+..++.|.+|+++++..+++.+.+- -.-.++||+..++. ...|-||-.|.+-|..+....
T Consensus 165 -----~~--pm~vVata~r~i~vynL~n~~te~k~~~Sp--Lk~Q~R~va~f~d~----~~~alGsiEGrv~iq~id~~~ 231 (347)
T KOG0647|consen 165 -----LY--PMAVVATAERHIAVYNLENPPTEFKRIESP--LKWQTRCVACFQDK----DGFALGSIEGRVAIQYIDDPN 231 (347)
T ss_pred -----cC--ceeEEEecCCcEEEEEcCCCcchhhhhcCc--ccceeeEEEEEecC----CceEeeeecceEEEEecCCCC
Confidence 11 347778889999999998875444433222 22348999988875 346889999999999887642
Q ss_pred CcccceEeecccc---------CeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510 247 DQWEGKVLHDFKT---------PVYRVSWSLTGNILAVADGNNNVTLWE 286 (288)
Q Consensus 247 ~~~~~~~~~~~~~---------~i~~~~~spdg~~l~s~~~d~~v~~w~ 286 (288)
. ..+-.++.|.. .|++++|+|.-..|+++++||++.+||
T Consensus 232 ~-~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWD 279 (347)
T KOG0647|consen 232 P-KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWD 279 (347)
T ss_pred c-cCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEec
Confidence 2 22334444541 367899999999999999999999998
No 73
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=4.1e-28 Score=218.78 Aligned_cols=237 Identities=25% Similarity=0.410 Sum_probs=192.5
Q ss_pred cccc-cccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEE-EeccccCeEEEEecCCCCCCEEEEeeCCCcEEE
Q 036510 6 IETG-HEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAK-LSGHKGAVWEVAWAHPKFGSILASCSFDGTVII 83 (288)
Q Consensus 6 ~~~~-h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~i 83 (288)
.+.+ |...+.+..|. ..++.+++.|.++++|+... +..+.+ +.||.+.|+++++.. .+.+|++||.|.++++
T Consensus 202 ~~~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~--~~~i~~~l~GH~g~V~~l~~~~--~~~~lvsgS~D~t~rv 275 (537)
T KOG0274|consen 202 VLLGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNN--GYLILTRLVGHFGGVWGLAFPS--GGDKLVSGSTDKTERV 275 (537)
T ss_pred eecccCcchhhhheee--cCeEEecCCCceeEEeeccc--ceEEEeeccCCCCCceeEEEec--CCCEEEEEecCCcEEe
Confidence 3444 45666677777 55899999999999999743 355555 999999999999964 3789999999999999
Q ss_pred eecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCC
Q 036510 84 WKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAP 163 (288)
Q Consensus 84 wd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~ 163 (288)
||..++. +.+++.+|...|.++...+ .++++|+.|.+|++|++.++.. .....+|..+|.++..+ .
T Consensus 276 Wd~~sg~---C~~~l~gh~stv~~~~~~~----~~~~sgs~D~tVkVW~v~n~~~---l~l~~~h~~~V~~v~~~--~-- 341 (537)
T KOG0274|consen 276 WDCSTGE---CTHSLQGHTSSVRCLTIDP----FLLVSGSRDNTVKVWDVTNGAC---LNLLRGHTGPVNCVQLD--E-- 341 (537)
T ss_pred EecCCCc---EEEEecCCCceEEEEEccC----ceEeeccCCceEEEEeccCcce---EEEeccccccEEEEEec--C--
Confidence 9988776 5778889999999998654 4678899999999999986643 34445699999999876 2
Q ss_pred CceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEee
Q 036510 164 GALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVA 243 (288)
Q Consensus 164 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~ 243 (288)
.++++|+.|++|++||+.++ ++++++.+|..+|.++.+.+. ..+.+|+.|++|++||+.
T Consensus 342 ------------~~lvsgs~d~~v~VW~~~~~----~cl~sl~gH~~~V~sl~~~~~-----~~~~Sgs~D~~IkvWdl~ 400 (537)
T KOG0274|consen 342 ------------PLLVSGSYDGTVKVWDPRTG----KCLKSLSGHTGRVYSLIVDSE-----NRLLSGSLDTTIKVWDLR 400 (537)
T ss_pred ------------CEEEEEecCceEEEEEhhhc----eeeeeecCCcceEEEEEecCc-----ceEEeeeeccceEeecCC
Confidence 67999999999999999865 789999999999999988762 479999999999999998
Q ss_pred cCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510 244 REGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 244 ~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~ 287 (288)
... .....+.+|.+.+..+. ..+++|++++.|++|++||.
T Consensus 401 ~~~--~c~~tl~~h~~~v~~l~--~~~~~Lvs~~aD~~Ik~WD~ 440 (537)
T KOG0274|consen 401 TKR--KCIHTLQGHTSLVSSLL--LRDNFLVSSSADGTIKLWDA 440 (537)
T ss_pred chh--hhhhhhcCCcccccccc--cccceeEeccccccEEEeec
Confidence 642 12234456666664444 58999999999999999984
No 74
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.3e-28 Score=199.24 Aligned_cols=248 Identities=25% Similarity=0.377 Sum_probs=202.6
Q ss_pred cccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEee
Q 036510 6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK 85 (288)
Q Consensus 6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd 85 (288)
.+.||.++|..++.......+.++|.|.+.+||.+. .+.++.++.||.++|+++.|.+ .+.+++++|.|++..||.
T Consensus 143 e~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~E--sg~CL~~Y~GH~GSVNsikfh~--s~~L~lTaSGD~taHIW~ 218 (481)
T KOG0300|consen 143 ELEGHKDGIWHVAADSTQPICGTASADHTARIWSLE--SGACLATYTGHTGSVNSIKFHN--SGLLLLTASGDETAHIWK 218 (481)
T ss_pred hhcccccceeeehhhcCCcceeecccccceeEEeec--cccceeeecccccceeeEEecc--ccceEEEccCCcchHHHH
Confidence 456999999999887777899999999999999995 4589999999999999999975 388999999999999996
Q ss_pred cC------CCC------------------------------ce-EEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcE
Q 036510 86 EG------NSN------------------------------EW-IKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNI 128 (288)
Q Consensus 86 ~~------~~~------------------------------~~-~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i 128 (288)
.. ..+ +. .+...+.+|...|.+.+|-.. +.+++++++|.+-
T Consensus 219 ~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~g--g~Q~vTaSWDRTA 296 (481)
T KOG0300|consen 219 AAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAG--GQQMVTASWDRTA 296 (481)
T ss_pred HhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcC--cceeeeeeccccc
Confidence 21 000 00 012246789999999999875 6789999999999
Q ss_pred EEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccC
Q 036510 129 SVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMH 208 (288)
Q Consensus 129 ~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h 208 (288)
.+||+.++.. +..+.+|....+-+.-.|.. +++++++.|.+.++||.++.. ..+..++||
T Consensus 297 nlwDVEtge~---v~~LtGHd~ELtHcstHptQ--------------rLVvTsSrDtTFRLWDFReaI---~sV~VFQGH 356 (481)
T KOG0300|consen 297 NLWDVETGEV---VNILTGHDSELTHCSTHPTQ--------------RLVVTSSRDTTFRLWDFREAI---QSVAVFQGH 356 (481)
T ss_pred eeeeeccCce---eccccCcchhccccccCCcc--------------eEEEEeccCceeEeccchhhc---ceeeeeccc
Confidence 9999987643 45667888888877777765 778899999999999998753 456678999
Q ss_pred CcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510 209 TDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 209 ~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~ 287 (288)
.+.|.++.|..+ ..+|+||+|.+|++||++...-+ ... .-..++++.++.+..+++||.--.++.|||||+
T Consensus 357 tdtVTS~vF~~d-----d~vVSgSDDrTvKvWdLrNMRsp--lAT-IRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDl 427 (481)
T KOG0300|consen 357 TDTVTSVVFNTD-----DRVVSGSDDRTVKVWDLRNMRSP--LAT-IRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDL 427 (481)
T ss_pred ccceeEEEEecC-----CceeecCCCceEEEeeeccccCc--cee-eecCCccceeEeecCCceEEeccCCceEEEEec
Confidence 999999999986 47999999999999999865321 111 112468999999999999999988899999995
No 75
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=1.8e-26 Score=208.97 Aligned_cols=234 Identities=16% Similarity=0.227 Sum_probs=165.2
Q ss_pred ccccccccceEEEEEcCC-CCEEEEeeCCCcEEEEEeCCCC------ceeeEEEeccccCeEEEEecCCCCCCEEEEeeC
Q 036510 5 KIETGHEDTVHDVAMDYY-GKRLATASSDYSIKIIGVGNNT------SQHLAKLSGHKGAVWEVAWAHPKFGSILASCSF 77 (288)
Q Consensus 5 ~~~~~h~~~v~~~~~s~~-g~~l~s~~~d~~i~lwd~~~~~------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~ 77 (288)
..+.+|.+.|.+++|+|+ +++|+|||.|++|+|||+.... ...+..+.+|...|.+++|+|. ...+|++++.
T Consensus 68 ~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~-g~~iLaSgS~ 146 (568)
T PTZ00420 68 IKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPM-NYYIMCSSGF 146 (568)
T ss_pred EEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCC-CCeEEEEEeC
Confidence 346799999999999997 7899999999999999985321 1234578899999999999864 2345689999
Q ss_pred CCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEE-
Q 036510 78 DGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVS- 156 (288)
Q Consensus 78 d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~- 156 (288)
|++|+|||++++.. ...+. |...|.+++|+|+ +.++++++.|+.|+|||++.+.. .....+|...+.+..
T Consensus 147 DgtIrIWDl~tg~~---~~~i~-~~~~V~Slswspd--G~lLat~s~D~~IrIwD~Rsg~~---i~tl~gH~g~~~s~~v 217 (568)
T PTZ00420 147 DSFVNIWDIENEKR---AFQIN-MPKKLSSLKWNIK--GNLLSGTCVGKHMHIIDPRKQEI---ASSFHIHDGGKNTKNI 217 (568)
T ss_pred CCeEEEEECCCCcE---EEEEe-cCCcEEEEEECCC--CCEEEEEecCCEEEEEECCCCcE---EEEEecccCCceeEEE
Confidence 99999999987652 23343 5578999999998 67888899999999999987643 233457766544332
Q ss_pred ----eCCCCCCCceecccccCCCceeEEeecCC----cEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEE
Q 036510 157 ----WAPSTAPGALVGSGFLDPVQKLCSGGCDN----TVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTI 228 (288)
Q Consensus 157 ----~~p~~~~~~~~~~~~~~~~~~l~s~~~d~----~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l 228 (288)
|++++ .++++++.|+ .|+|||++.....+. ...+..+...+.. .|.++. +.++
T Consensus 218 ~~~~fs~d~--------------~~IlTtG~d~~~~R~VkLWDlr~~~~pl~-~~~ld~~~~~L~p-~~D~~t---g~l~ 278 (568)
T PTZ00420 218 WIDGLGGDD--------------NYILSTGFSKNNMREMKLWDLKNTTSALV-TMSIDNASAPLIP-HYDEST---GLIY 278 (568)
T ss_pred EeeeEcCCC--------------CEEEEEEcCCCCccEEEEEECCCCCCceE-EEEecCCccceEE-eeeCCC---CCEE
Confidence 33443 6788877774 799999985321111 1122333333222 333432 4689
Q ss_pred EEEeCCCcEEEEEeecCCCcccceEeec--cccCeEEEEeecCCC
Q 036510 229 ASASEDGKVIIWTVAREGDQWEGKVLHD--FKTPVYRVSWSLTGN 271 (288)
Q Consensus 229 ~s~s~D~~i~iw~~~~~~~~~~~~~~~~--~~~~i~~~~~spdg~ 271 (288)
++|+.|++|++|++.... ...+.. +..++.+++|.|+-.
T Consensus 279 lsGkGD~tIr~~e~~~~~----~~~l~~~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 279 LIGKGDGNCRYYQHSLGS----IRKVNEYKSCSPFRSFGFLPKQI 319 (568)
T ss_pred EEEECCCeEEEEEccCCc----EEeecccccCCCccceEEccccc
Confidence 999999999999986431 122222 346788899999754
No 76
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=4e-27 Score=183.40 Aligned_cols=242 Identities=24% Similarity=0.343 Sum_probs=191.6
Q ss_pred ccccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEe
Q 036510 5 KIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIW 84 (288)
Q Consensus 5 ~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iw 84 (288)
+...||...|..++.+.|+..++||+.|+.+.+||++ +++.++.+.+|.+.|+.++|+. +..+++|||.|.++++|
T Consensus 53 ktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~--TGkv~Rr~rgH~aqVNtV~fNe--esSVv~SgsfD~s~r~w 128 (307)
T KOG0316|consen 53 KTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVN--TGKVDRRFRGHLAQVNTVRFNE--ESSVVASGSFDSSVRLW 128 (307)
T ss_pred eeecCCCceeeeccccccccccccCCCCceEEEEEcc--cCeeeeecccccceeeEEEecC--cceEEEeccccceeEEE
Confidence 3556899999999999999999999999999999995 4578999999999999999974 47899999999999999
Q ss_pred ecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCC
Q 036510 85 KEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPG 164 (288)
Q Consensus 85 d~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~ 164 (288)
|-++.. ..+++++....+.|.++.++.+ .+++|+.||++|.||+|.+... . .....+|++++|++++
T Consensus 129 DCRS~s-~ePiQildea~D~V~Si~v~~h----eIvaGS~DGtvRtydiR~G~l~---s--Dy~g~pit~vs~s~d~--- 195 (307)
T KOG0316|consen 129 DCRSRS-FEPIQILDEAKDGVSSIDVAEH----EIVAGSVDGTVRTYDIRKGTLS---S--DYFGHPITSVSFSKDG--- 195 (307)
T ss_pred EcccCC-CCccchhhhhcCceeEEEeccc----EEEeeccCCcEEEEEeecceee---h--hhcCCcceeEEecCCC---
Confidence 987643 3356677778889999998765 4889999999999999976421 1 1234469999999997
Q ss_pred ceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEE--EecCCCCCCCcEEEEEeCCCcEEEEEe
Q 036510 165 ALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDV--AWAPNLGLPKSTIASASEDGKVIIWTV 242 (288)
Q Consensus 165 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v--~~sp~~~~~~~~l~s~s~D~~i~iw~~ 242 (288)
+.+..++-|+++++.|-.+| +++.+.+||.+.=..+ +++.. ...+++||.||.+.+||+
T Consensus 196 -----------nc~La~~l~stlrLlDk~tG----klL~sYkGhkn~eykldc~l~qs----dthV~sgSEDG~Vy~wdL 256 (307)
T KOG0316|consen 196 -----------NCSLASSLDSTLRLLDKETG----KLLKSYKGHKNMEYKLDCCLNQS----DTHVFSGSEDGKVYFWDL 256 (307)
T ss_pred -----------CEEEEeeccceeeecccchh----HHHHHhcccccceeeeeeeeccc----ceeEEeccCCceEEEEEe
Confidence 66778899999999999888 5777889998743332 44432 468999999999999999
Q ss_pred ecCCCcccceEeeccccC-eEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510 243 AREGDQWEGKVLHDFKTP-VYRVSWSLTGNILAVADGNNNVTLWE 286 (288)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~-i~~~~~spdg~~l~s~~~d~~v~~w~ 286 (288)
-.... ...+..+..+ |.+++++|.-..|+++.. +.+.+|.
T Consensus 257 vd~~~---~sk~~~~~~v~v~dl~~hp~~~~f~~A~~-~~~~~~~ 297 (307)
T KOG0316|consen 257 VDETQ---ISKLSVVSTVIVTDLSCHPTMDDFITATG-HGDLFWY 297 (307)
T ss_pred cccee---eeeeccCCceeEEeeecccCccceeEecC-Cceecee
Confidence 75422 1222233455 789999999988888854 4555664
No 77
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3.5e-28 Score=212.43 Aligned_cols=241 Identities=20% Similarity=0.286 Sum_probs=190.2
Q ss_pred EEEEc-CCCCEEEEeeCCCcEEEEEeCCCC----ceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCC
Q 036510 16 DVAMD-YYGKRLATASSDYSIKIIGVGNNT----SQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSN 90 (288)
Q Consensus 16 ~~~~s-~~g~~l~s~~~d~~i~lwd~~~~~----~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~ 90 (288)
.+..+ |.++||++||.|+.|++|++.... .+.+.++..|.+=|+.+.-.. +++.|+|+|.|-+|++|+....+
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~--~~~tlIS~SsDtTVK~W~~~~~~ 106 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCG--NGKTLISASSDTTVKVWNAHKDN 106 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhc--CCCceEEecCCceEEEeecccCc
Confidence 34455 457889999999999999885322 234778888998888887654 47899999999999999987665
Q ss_pred ceEEeEEeecCCCceeEEEe-ccCCCCeEEEEEeCCCcEEEEeecCCCC-----eee--EE-eeccCCCCeeEEEeCCCC
Q 036510 91 EWIKDHVFEDHKSSVNSIDW-APHELGLCLACGSSDGNISVFTARADGG-----WDT--SR-IDQAHPVGVTSVSWAPST 161 (288)
Q Consensus 91 ~~~~~~~~~~h~~~v~~l~~-~p~~~~~~l~sg~~d~~i~i~d~~~~~~-----~~~--~~-~~~~~~~~v~~i~~~p~~ 161 (288)
.+ +..++..|.+-|.|++. -++ ..++|+||.|+.|.+||+..+.. .+. .. ...++..+|.+++-++.+
T Consensus 107 ~~-c~stir~H~DYVkcla~~ak~--~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~ 183 (735)
T KOG0308|consen 107 TF-CMSTIRTHKDYVKCLAYIAKN--NELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG 183 (735)
T ss_pred ch-hHhhhhcccchheeeeecccC--ceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcc
Confidence 33 56678889999999998 444 56899999999999999985421 110 01 112667778888777765
Q ss_pred CCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEE
Q 036510 162 APGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWT 241 (288)
Q Consensus 162 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~ 241 (288)
..+++|+..+.+++||.+++. .+..+.||.+-|+++..++|+ ++++|+|+|++|++||
T Consensus 184 --------------t~ivsGgtek~lr~wDprt~~----kimkLrGHTdNVr~ll~~dDG----t~~ls~sSDgtIrlWd 241 (735)
T KOG0308|consen 184 --------------TIIVSGGTEKDLRLWDPRTCK----KIMKLRGHTDNVRVLLVNDDG----TRLLSASSDGTIRLWD 241 (735)
T ss_pred --------------eEEEecCcccceEEecccccc----ceeeeeccccceEEEEEcCCC----CeEeecCCCceEEeee
Confidence 679999999999999998863 355678999999999999984 7899999999999999
Q ss_pred eecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510 242 VAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE 286 (288)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~ 286 (288)
+... ++ ...+..|...|+++..+|+-+.+++|+.|+.|..=|
T Consensus 242 LgqQ--rC-l~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Td 283 (735)
T KOG0308|consen 242 LGQQ--RC-LATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTD 283 (735)
T ss_pred cccc--ce-eeeEEeccCceEEEeeCCCcceEEecCCCCcEEecc
Confidence 8742 22 234566777799999999999999999999987644
No 78
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.4e-27 Score=186.74 Aligned_cols=221 Identities=30% Similarity=0.472 Sum_probs=180.9
Q ss_pred cccccccceEEEEEcC--CCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEE
Q 036510 6 IETGHEDTVHDVAMDY--YGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVII 83 (288)
Q Consensus 6 ~~~~h~~~v~~~~~s~--~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~i 83 (288)
.+.||+++|..+.|-. .|.+|||+++|+.|-||...+++.........|..+|++++|.|.+.|-.|+++|.||.|.|
T Consensus 51 ~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsv 130 (299)
T KOG1332|consen 51 ELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSV 130 (299)
T ss_pred EecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEE
Confidence 4679999999999864 69999999999999999987776666777789999999999988778899999999999999
Q ss_pred eecCCCCceEEeEEeecCCCceeEEEeccCCC------------CeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCC
Q 036510 84 WKEGNSNEWIKDHVFEDHKSSVNSIDWAPHEL------------GLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVG 151 (288)
Q Consensus 84 wd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~------------~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~ 151 (288)
.+....+.+...++...|.-.|++++|.|... -+.|++|+-|+.|+||+...+ .|.....+++|.+-
T Consensus 131 l~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~-~w~~e~~l~~H~dw 209 (299)
T KOG1332|consen 131 LTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD-SWKLERTLEGHKDW 209 (299)
T ss_pred EEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCc-chhhhhhhhhcchh
Confidence 99876655555556678999999999998621 156999999999999998765 45444557899999
Q ss_pred eeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeC--CceeeeeeeccccCCcceEEEEecCCCCCCCcEEE
Q 036510 152 VTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYN--GIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIA 229 (288)
Q Consensus 152 v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~ 229 (288)
|+.++|+|.... +...++|+|.|+++.||-... ++++.++ +....+.+..++||+. ++.|+
T Consensus 210 VRDVAwaP~~gl----------~~s~iAS~SqDg~viIwt~~~e~e~wk~tl---l~~f~~~~w~vSWS~s----Gn~La 272 (299)
T KOG1332|consen 210 VRDVAWAPSVGL----------PKSTIASCSQDGTVIIWTKDEEYEPWKKTL---LEEFPDVVWRVSWSLS----GNILA 272 (299)
T ss_pred hhhhhhccccCC----------CceeeEEecCCCcEEEEEecCccCcccccc---cccCCcceEEEEEecc----ccEEE
Confidence 999999998532 126799999999999998763 2333333 3446778999999997 47899
Q ss_pred EEeCCCcEEEEEeec
Q 036510 230 SASEDGKVIIWTVAR 244 (288)
Q Consensus 230 s~s~D~~i~iw~~~~ 244 (288)
.++.|+.+.+|....
T Consensus 273 Vs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 273 VSGGDNKVTLWKENV 287 (299)
T ss_pred EecCCcEEEEEEeCC
Confidence 999999999998654
No 79
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.96 E-value=2.2e-27 Score=208.77 Aligned_cols=239 Identities=24% Similarity=0.339 Sum_probs=195.4
Q ss_pred cccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEE-EEecCCCCCCEEEEeeCCCcEEEe
Q 036510 6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWE-VAWAHPKFGSILASCSFDGTVIIW 84 (288)
Q Consensus 6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~~~l~s~s~d~~v~iw 84 (288)
.+.||...|..+++.+.. .++++|.|+++++|+-.+...-....+.+|.+-|.. ++|.. .++..+++|++|.++.+|
T Consensus 9 ~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e-~~~~~l~~g~~D~~i~v~ 86 (745)
T KOG0301|consen 9 ELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAE-SDKGRLVVGGMDTTIIVF 86 (745)
T ss_pred EeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceecc-ccCcceEeecccceEEEE
Confidence 355999999888877544 899999999999998644333334567788888877 88865 346679999999999999
Q ss_pred ecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCC
Q 036510 85 KEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPG 164 (288)
Q Consensus 85 d~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~ 164 (288)
...+.. +..++.+|...|.|++-.-+ +. +++|++|.++++|-..+. ....++|+..|.++..-|.
T Consensus 87 ~~~~~~---P~~~LkgH~snVC~ls~~~~--~~-~iSgSWD~TakvW~~~~l-----~~~l~gH~asVWAv~~l~e---- 151 (745)
T KOG0301|consen 87 KLSQAE---PLYTLKGHKSNVCSLSIGED--GT-LISGSWDSTAKVWRIGEL-----VYSLQGHTASVWAVASLPE---- 151 (745)
T ss_pred ecCCCC---chhhhhccccceeeeecCCc--Cc-eEecccccceEEecchhh-----hcccCCcchheeeeeecCC----
Confidence 987655 45678899999999985544 33 899999999999976432 1236799999999988876
Q ss_pred ceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeec
Q 036510 165 ALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAR 244 (288)
Q Consensus 165 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~ 244 (288)
+.++|||+|++||+|.-. +++.++.+|.+.|+.+++-|+ ..|+|++.||.|+.|++..
T Consensus 152 -----------~~~vTgsaDKtIklWk~~------~~l~tf~gHtD~VRgL~vl~~-----~~flScsNDg~Ir~w~~~g 209 (745)
T KOG0301|consen 152 -----------NTYVTGSADKTIKLWKGG------TLLKTFSGHTDCVRGLAVLDD-----SHFLSCSNDGSIRLWDLDG 209 (745)
T ss_pred -----------CcEEeccCcceeeeccCC------chhhhhccchhheeeeEEecC-----CCeEeecCCceEEEEeccC
Confidence 469999999999999853 467789999999999999986 3599999999999999853
Q ss_pred CCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510 245 EGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 245 ~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~ 287 (288)
.....+++|.+-|++++..+++..++++++|+++++|+.
T Consensus 210 ----e~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~ 248 (745)
T KOG0301|consen 210 ----EVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKK 248 (745)
T ss_pred ----ceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeec
Confidence 134567899999999999999999999999999999984
No 80
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=9.6e-27 Score=196.22 Aligned_cols=237 Identities=22% Similarity=0.339 Sum_probs=184.0
Q ss_pred cccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecC
Q 036510 8 TGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEG 87 (288)
Q Consensus 8 ~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~ 87 (288)
.+|.+.+.+++.|+||+|||+|+.|..|.||+.+ +.++++.+.+|.+.|.+++|-.. ...|.++|.|++|++|++.
T Consensus 199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~--t~ehv~~~~ghr~~V~~L~fr~g--t~~lys~s~Drsvkvw~~~ 274 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCD--TLEHVKVFKGHRGAVSSLAFRKG--TSELYSASADRSVKVWSID 274 (479)
T ss_pred ccccceeEEEEEcCCCcEEEecCCCceEEEecCc--ccchhhcccccccceeeeeeecC--ccceeeeecCCceEEEehh
Confidence 3899999999999999999999999999999985 44778889999999999999643 5689999999999999985
Q ss_pred CCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCcee
Q 036510 88 NSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALV 167 (288)
Q Consensus 88 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~ 167 (288)
... ...++.+|.+.|..++...- .+++..|+.|+++++|++....+ .+..+|...+-|++|-.+
T Consensus 275 ~~s---~vetlyGHqd~v~~IdaL~r--eR~vtVGgrDrT~rlwKi~eesq----lifrg~~~sidcv~~In~------- 338 (479)
T KOG0299|consen 275 QLS---YVETLYGHQDGVLGIDALSR--ERCVTVGGRDRTVRLWKIPEESQ----LIFRGGEGSIDCVAFIND------- 338 (479)
T ss_pred HhH---HHHHHhCCccceeeechhcc--cceEEeccccceeEEEeccccce----eeeeCCCCCeeeEEEecc-------
Confidence 432 34567899999999986544 56777888999999999965422 344567777888887654
Q ss_pred cccccCCCceeEEeecCCcEEEEEEeCCc--eeeeeeecc------ccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEE
Q 036510 168 GSGFLDPVQKLCSGGCDNTVKVWKLYNGI--WKMDCFPAL------QMHTDWVRDVAWAPNLGLPKSTIASASEDGKVII 239 (288)
Q Consensus 168 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~------~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~i 239 (288)
..++|||.||.|.||++.+.. +..+..+.+ ..+..||+++...|.. .++|+||.+|.||+
T Consensus 339 --------~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~s----dL~asGS~~G~vrL 406 (479)
T KOG0299|consen 339 --------EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGS----DLLASGSWSGCVRL 406 (479)
T ss_pred --------cceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccC----ceEEecCCCCceEE
Confidence 359999999999999996531 111111111 1233499999999974 68999999999999
Q ss_pred EEeecCCCcccceEeec--cccCeEEEEeecCCCEEEEEeC
Q 036510 240 WTVAREGDQWEGKVLHD--FKTPVYRVSWSLTGNILAVADG 278 (288)
Q Consensus 240 w~~~~~~~~~~~~~~~~--~~~~i~~~~~spdg~~l~s~~~ 278 (288)
|.+..+.. ...++.. +.+.|++++|+++|+.|++|.+
T Consensus 407 W~i~~g~r--~i~~l~~ls~~GfVNsl~f~~sgk~ivagiG 445 (479)
T KOG0299|consen 407 WKIEDGLR--AINLLYSLSLVGFVNSLAFSNSGKRIVAGIG 445 (479)
T ss_pred EEecCCcc--ccceeeecccccEEEEEEEccCCCEEEEecc
Confidence 99986522 2233332 3578999999999998877743
No 81
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=1.6e-28 Score=204.44 Aligned_cols=244 Identities=19% Similarity=0.277 Sum_probs=190.4
Q ss_pred ccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeec
Q 036510 7 ETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE 86 (288)
Q Consensus 7 ~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~ 86 (288)
+..|++.|..+.|-++...|++|+.|..|++|++..+....+.+|.|..++|+.+.|.++ +..+++++.|+.+++|++
T Consensus 171 ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~--~~~~iAas~d~~~r~Wnv 248 (459)
T KOG0288|consen 171 LDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSD--NKHVIAASNDKNLRLWNV 248 (459)
T ss_pred hhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCC--CceEEeecCCCceeeeec
Confidence 457999999999999878999999999999999977655678889999999999999765 889999999999999998
Q ss_pred CCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCce
Q 036510 87 GNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGAL 166 (288)
Q Consensus 87 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~ 166 (288)
.+.. ..+++.+|.+.|+++.|.... ..+++|+.|.+|++||++...+...+.. ...+..|.-++
T Consensus 249 d~~r---~~~TLsGHtdkVt~ak~~~~~--~~vVsgs~DRtiK~WDl~k~~C~kt~l~----~S~cnDI~~~~------- 312 (459)
T KOG0288|consen 249 DSLR---LRHTLSGHTDKVTAAKFKLSH--SRVVSGSADRTIKLWDLQKAYCSKTVLP----GSQCNDIVCSI------- 312 (459)
T ss_pred cchh---hhhhhcccccceeeehhhccc--cceeeccccchhhhhhhhhhheeccccc----cccccceEecc-------
Confidence 7654 567889999999999997653 2389999999999999987543222111 11233333221
Q ss_pred ecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCC
Q 036510 167 VGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREG 246 (288)
Q Consensus 167 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~ 246 (288)
..+.||..|++|++||.+.+ ++..+..++. .|.++..++++ ..|++.+.|.++.+.|++...
T Consensus 313 ---------~~~~SgH~DkkvRfwD~Rs~----~~~~sv~~gg-~vtSl~ls~~g----~~lLsssRDdtl~viDlRt~e 374 (459)
T KOG0288|consen 313 ---------SDVISGHFDKKVRFWDIRSA----DKTRSVPLGG-RVTSLDLSMDG----LELLSSSRDDTLKVIDLRTKE 374 (459)
T ss_pred ---------eeeeecccccceEEEeccCC----ceeeEeecCc-ceeeEeeccCC----eEEeeecCCCceeeeeccccc
Confidence 45889999999999999876 3344445554 79999999984 568888999999999998542
Q ss_pred CcccceEeecc--ccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510 247 DQWEGKVLHDF--KTPVYRVSWSLTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 247 ~~~~~~~~~~~--~~~i~~~~~spdg~~l~s~~~d~~v~~w~~ 287 (288)
-. .....-++ ....+.+.|||++.|+|+||.||.|+||++
T Consensus 375 I~-~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v 416 (459)
T KOG0288|consen 375 IR-QTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSV 416 (459)
T ss_pred EE-EEeeccccccccccceeEECCCCceeeeccCCCcEEEEEc
Confidence 11 00001112 234789999999999999999999999984
No 82
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.96 E-value=1.9e-27 Score=195.09 Aligned_cols=205 Identities=23% Similarity=0.336 Sum_probs=170.6
Q ss_pred eeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCC
Q 036510 46 QHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSD 125 (288)
Q Consensus 46 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d 125 (288)
+..+.+.+|.+=|.++++.|. ++.|++||+|++++|||++++. +..++.+|...|..+++++. --++.+++.|
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~--n~wf~tgs~DrtikIwDlatg~---LkltltGhi~~vr~vavS~r--HpYlFs~ged 214 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPG--NEWFATGSADRTIKIWDLATGQ---LKLTLTGHIETVRGVAVSKR--HPYLFSAGED 214 (460)
T ss_pred eehhhhhhccceEEEEeeCCC--ceeEEecCCCceeEEEEcccCe---EEEeecchhheeeeeeeccc--CceEEEecCC
Confidence 456778899999999999653 7899999999999999999875 55678899999999999986 3478899999
Q ss_pred CcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeecc
Q 036510 126 GNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPAL 205 (288)
Q Consensus 126 ~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 205 (288)
+.|+-||+.++.- .+.+.+|-..|.+++..|.- .+|+||+.|.++|+||+++. ..++.+
T Consensus 215 k~VKCwDLe~nkv---IR~YhGHlS~V~~L~lhPTl--------------dvl~t~grDst~RvWDiRtr----~~V~~l 273 (460)
T KOG0285|consen 215 KQVKCWDLEYNKV---IRHYHGHLSGVYCLDLHPTL--------------DVLVTGGRDSTIRVWDIRTR----ASVHVL 273 (460)
T ss_pred CeeEEEechhhhh---HHHhccccceeEEEeccccc--------------eeEEecCCcceEEEeeeccc----ceEEEe
Confidence 9999999986532 23456888999999999976 78999999999999999986 467889
Q ss_pred ccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEe
Q 036510 206 QMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLW 285 (288)
Q Consensus 206 ~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w 285 (288)
.||+.+|.+|.+.|.. -++++||.|++|++||+...+ ....+.-|+..+.+++.+|.-..||+++.|+ |+-|
T Consensus 274 ~GH~~~V~~V~~~~~d----pqvit~S~D~tvrlWDl~agk---t~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w 345 (460)
T KOG0285|consen 274 SGHTNPVASVMCQPTD----PQVITGSHDSTVRLWDLRAGK---TMITLTHHKKSVRALCLHPKENLFASASPDN-IKQW 345 (460)
T ss_pred cCCCCcceeEEeecCC----CceEEecCCceEEEeeeccCc---eeEeeecccceeeEEecCCchhhhhccCCcc-ceec
Confidence 9999999999999863 369999999999999998642 2234455677899999999999999987754 5555
Q ss_pred E
Q 036510 286 E 286 (288)
Q Consensus 286 ~ 286 (288)
+
T Consensus 346 ~ 346 (460)
T KOG0285|consen 346 K 346 (460)
T ss_pred c
Confidence 5
No 83
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.95 E-value=5.3e-27 Score=193.49 Aligned_cols=216 Identities=23% Similarity=0.478 Sum_probs=169.7
Q ss_pred eccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCC-------------CceEEeEEeecCCCceeEEEeccCCCCeE
Q 036510 52 SGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNS-------------NEWIKDHVFEDHKSSVNSIDWAPHELGLC 118 (288)
Q Consensus 52 ~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~-------------~~~~~~~~~~~h~~~v~~l~~~p~~~~~~ 118 (288)
-+|.+.++.++-++-.+..+.++.+..|.|+||++... .....+.++.+|.+.-+.|+|+|-..+ .
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g-~ 226 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG-R 226 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc-c
Confidence 36888888888766445678899999999999997421 112344567889999999999996544 4
Q ss_pred EEEEeCCCcEEEEeecCCCCeeeE-EeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCce
Q 036510 119 LACGSSDGNISVFTARADGGWDTS-RIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIW 197 (288)
Q Consensus 119 l~sg~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 197 (288)
|++|.--+.|++|...+ +.|..- ....+|+..|..+.|||... ++|+|+|+|++|+|||++.++.
T Consensus 227 LlsGDc~~~I~lw~~~~-g~W~vd~~Pf~gH~~SVEDLqWSptE~-------------~vfaScS~DgsIrIWDiRs~~~ 292 (440)
T KOG0302|consen 227 LLSGDCVKGIHLWEPST-GSWKVDQRPFTGHTKSVEDLQWSPTED-------------GVFASCSCDGSIRIWDIRSGPK 292 (440)
T ss_pred cccCccccceEeeeecc-CceeecCccccccccchhhhccCCccC-------------ceEEeeecCceEEEEEecCCCc
Confidence 78887788999999877 456432 23457999999999999874 7899999999999999998743
Q ss_pred eeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecC-CCEEEEE
Q 036510 198 KMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLT-GNILAVA 276 (288)
Q Consensus 198 ~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spd-g~~l~s~ 276 (288)
+. ++ ..+.|..-|+.|+|+... .+||+|++||+++|||++.-+.......++-|..||+++.|+|. ...|+++
T Consensus 293 ~~-~~-~~kAh~sDVNVISWnr~~----~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaas 366 (440)
T KOG0302|consen 293 KA-AV-STKAHNSDVNVISWNRRE----PLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAAS 366 (440)
T ss_pred cc-ee-EeeccCCceeeEEccCCc----ceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEec
Confidence 32 22 237899999999999864 38999999999999999864322223455667899999999995 5778999
Q ss_pred eCCCcEEEeEcC
Q 036510 277 DGNNNVTLWEEA 288 (288)
Q Consensus 277 ~~d~~v~~w~~~ 288 (288)
++|+.|.|||++
T Consensus 367 g~D~QitiWDls 378 (440)
T KOG0302|consen 367 GEDNQITIWDLS 378 (440)
T ss_pred cCCCcEEEEEee
Confidence 999999999963
No 84
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=2.7e-27 Score=197.17 Aligned_cols=240 Identities=25% Similarity=0.276 Sum_probs=182.6
Q ss_pred cccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEee
Q 036510 6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK 85 (288)
Q Consensus 6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd 85 (288)
.+.|-.+.|+.+.|.+++++++++++|+.+++|+++. .+...+|.||++.|+++.|... ...+++|+.|.++|+||
T Consensus 214 tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~--~r~~~TLsGHtdkVt~ak~~~~--~~~vVsgs~DRtiK~WD 289 (459)
T KOG0288|consen 214 TLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDS--LRLRHTLSGHTDKVTAAKFKLS--HSRVVSGSADRTIKLWD 289 (459)
T ss_pred hhhccCCCcceeeecCCCceEEeecCCCceeeeeccc--hhhhhhhcccccceeeehhhcc--ccceeeccccchhhhhh
Confidence 4556778899999999999999999999999999964 3668899999999999999753 34499999999999999
Q ss_pred cCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCc
Q 036510 86 EGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGA 165 (288)
Q Consensus 86 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~ 165 (288)
+....+.. ..+ ....++.+..++ ..+++|..|++|++||.+...... ....+ +.|+++..++++
T Consensus 290 l~k~~C~k--t~l--~~S~cnDI~~~~----~~~~SgH~DkkvRfwD~Rs~~~~~---sv~~g-g~vtSl~ls~~g---- 353 (459)
T KOG0288|consen 290 LQKAYCSK--TVL--PGSQCNDIVCSI----SDVISGHFDKKVRFWDIRSADKTR---SVPLG-GRVTSLDLSMDG---- 353 (459)
T ss_pred hhhhheec--ccc--ccccccceEecc----eeeeecccccceEEEeccCCceee---EeecC-cceeeEeeccCC----
Confidence 98755321 122 233455555443 357899999999999998764322 12223 379999988887
Q ss_pred eecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeec----cccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEE
Q 036510 166 LVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPA----LQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWT 241 (288)
Q Consensus 166 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~----~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~ 241 (288)
..|.+++.|.++++.|+++..- ..... ..+|. .+.+.|||++ .|+|+||.||.|+||+
T Consensus 354 ----------~~lLsssRDdtl~viDlRt~eI--~~~~sA~g~k~asD--wtrvvfSpd~----~YvaAGS~dgsv~iW~ 415 (459)
T KOG0288|consen 354 ----------LELLSSSRDDTLKVIDLRTKEI--RQTFSAEGFKCASD--WTRVVFSPDG----SYVAAGSADGSVYIWS 415 (459)
T ss_pred ----------eEEeeecCCCceeeeecccccE--EEEeeccccccccc--cceeEECCCC----ceeeeccCCCcEEEEE
Confidence 5677789999999999987521 11111 12333 6889999984 7899999999999999
Q ss_pred eecCCCcccceEeecccc--CeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510 242 VAREGDQWEGKVLHDFKT--PVYRVSWSLTGNILAVADGNNNVTLWE 286 (288)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~--~i~~~~~spdg~~l~s~~~d~~v~~w~ 286 (288)
+...+ .+ ..++.... .|++++|+|.|..+++++.++.+++|.
T Consensus 416 v~tgK--lE-~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 416 VFTGK--LE-KVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred ccCce--EE-EEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 87642 22 22233233 599999999999999999999999994
No 85
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.95 E-value=7.4e-26 Score=186.02 Aligned_cols=258 Identities=19% Similarity=0.276 Sum_probs=191.0
Q ss_pred cccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEee
Q 036510 6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK 85 (288)
Q Consensus 6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd 85 (288)
.++||.+.|.++.|+.+|.+||+|+.+|.|+||+...+ .....+..--..+-=++|.| -+.+|+.|+.||.+=+|.
T Consensus 101 eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg--~~~~~~~~e~~dieWl~WHp--~a~illAG~~DGsvWmw~ 176 (399)
T KOG0296|consen 101 ELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTG--GEQWKLDQEVEDIEWLKWHP--RAHILLAGSTDGSVWMWQ 176 (399)
T ss_pred EecCCCCceEEEEEccCceEEEecCCCccEEEEEcccC--ceEEEeecccCceEEEEecc--cccEEEeecCCCcEEEEE
Confidence 46799999999999999999999999999999998644 33444443344455577754 489999999999999999
Q ss_pred cCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCC---
Q 036510 86 EGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTA--- 162 (288)
Q Consensus 86 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~--- 162 (288)
+.++. ..+.+++|..++++=.|.|+ ++.+++|..||+|++|+.+++..+......+ .....++.++..+.
T Consensus 177 ip~~~---~~kv~~Gh~~~ct~G~f~pd--GKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e--~~~~~~~~~~~~~~~~~ 249 (399)
T KOG0296|consen 177 IPSQA---LCKVMSGHNSPCTCGEFIPD--GKRILTGYDDGTIIVWNPKTGQPLHKITQAE--GLELPCISLNLAGSTLT 249 (399)
T ss_pred CCCcc---eeeEecCCCCCcccccccCC--CceEEEEecCceEEEEecCCCceeEEecccc--cCcCCccccccccceeE
Confidence 87643 45678999999999999998 7889999999999999998765433221000 00111111111100
Q ss_pred --------------CCcee----------------------cccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccc
Q 036510 163 --------------PGALV----------------------GSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQ 206 (288)
Q Consensus 163 --------------~~~~~----------------------~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 206 (288)
.+..+ ..++.....+.+.|+-||+|.|||+.... . +..-
T Consensus 250 ~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~----~-R~~c 324 (399)
T KOG0296|consen 250 KGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST----L-RHIC 324 (399)
T ss_pred eccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccch----h-heec
Confidence 01100 11222334578899999999999997642 1 1223
Q ss_pred cCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510 207 MHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE 286 (288)
Q Consensus 207 ~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~ 286 (288)
.|...|..+.|-++ .+|++++.|++|++||.+..+ .+-...+|..+|...+++|++++++++|.|++.+|++
T Consensus 325 ~he~~V~~l~w~~t-----~~l~t~c~~g~v~~wDaRtG~---l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 325 EHEDGVTKLKWLNT-----DYLLTACANGKVRQWDARTGQ---LKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFE 396 (399)
T ss_pred cCCCceEEEEEcCc-----chheeeccCceEEeeeccccc---eEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEe
Confidence 47778999999884 479999999999999998653 2345678889999999999999999999999999997
Q ss_pred c
Q 036510 287 E 287 (288)
Q Consensus 287 ~ 287 (288)
.
T Consensus 397 v 397 (399)
T KOG0296|consen 397 V 397 (399)
T ss_pred c
Confidence 5
No 86
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.95 E-value=2.1e-27 Score=201.32 Aligned_cols=248 Identities=17% Similarity=0.278 Sum_probs=193.4
Q ss_pred cccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEee
Q 036510 6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK 85 (288)
Q Consensus 6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd 85 (288)
.+.||..+|..++|+.+|+.++|+|.|+++++||++ +++++..+.. ...++++.|.++ +.+.|++|+.|+.|+.||
T Consensus 253 tf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtE--TG~~~~~f~~-~~~~~cvkf~pd-~~n~fl~G~sd~ki~~wD 328 (503)
T KOG0282|consen 253 TFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTE--TGQVLSRFHL-DKVPTCVKFHPD-NQNIFLVGGSDKKIRQWD 328 (503)
T ss_pred hhhcchhhhhhhhccccCCeeeeeecceeeeeeccc--cceEEEEEec-CCCceeeecCCC-CCcEEEEecCCCcEEEEe
Confidence 456999999999999999999999999999999984 5566666642 234577887554 468999999999999999
Q ss_pred cCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCc
Q 036510 86 EGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGA 165 (288)
Q Consensus 86 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~ 165 (288)
+++++ .++.+..|.+.|..+.|-+. +..+++.+.|++++||+.+.+..+........|+ ..++...|++
T Consensus 329 iRs~k---vvqeYd~hLg~i~~i~F~~~--g~rFissSDdks~riWe~~~~v~ik~i~~~~~hs--mP~~~~~P~~---- 397 (503)
T KOG0282|consen 329 IRSGK---VVQEYDRHLGAILDITFVDE--GRRFISSSDDKSVRIWENRIPVPIKNIADPEMHT--MPCLTLHPNG---- 397 (503)
T ss_pred ccchH---HHHHHHhhhhheeeeEEccC--CceEeeeccCccEEEEEcCCCccchhhcchhhcc--CcceecCCCC----
Confidence 99876 45667789999999999987 6789999999999999988754332211222343 4567777876
Q ss_pred eecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCc--ceEEEEecCCCCCCCcEEEEEeCCCcEEEEEee
Q 036510 166 LVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTD--WVRDVAWAPNLGLPKSTIASASEDGKVIIWTVA 243 (288)
Q Consensus 166 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~--~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~ 243 (288)
..++.-+-|+.|.++.+...- .+.....+.||.- +-..|.||||+ .+|++|+.||.+.+||.+
T Consensus 398 ----------~~~~aQs~dN~i~ifs~~~~~-r~nkkK~feGh~vaGys~~v~fSpDG----~~l~SGdsdG~v~~wdwk 462 (503)
T KOG0282|consen 398 ----------KWFAAQSMDNYIAIFSTVPPF-RLNKKKRFEGHSVAGYSCQVDFSPDG----RTLCSGDSDGKVNFWDWK 462 (503)
T ss_pred ----------CeehhhccCceEEEEeccccc-ccCHhhhhcceeccCceeeEEEcCCC----CeEEeecCCccEEEeech
Confidence 678888889999998865431 2223345677743 45678999985 789999999999999988
Q ss_pred cCCCcccceEeeccccCeEEEEeecCC-CEEEEEeCCCcEEEeE
Q 036510 244 REGDQWEGKVLHDFKTPVYRVSWSLTG-NILAVADGNNNVTLWE 286 (288)
Q Consensus 244 ~~~~~~~~~~~~~~~~~i~~~~~spdg-~~l~s~~~d~~v~~w~ 286 (288)
..+ ....++.|..++..+.|+|-. ..+|+++-||.|++|+
T Consensus 463 t~k---l~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 463 TTK---LVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred hhh---hhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 643 234456677899999999975 6899999999999996
No 87
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=5.6e-27 Score=190.36 Aligned_cols=246 Identities=16% Similarity=0.220 Sum_probs=193.6
Q ss_pred cccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCc------eeeEEEeccccCeEEEEecCCCCCCEEEEeeCCC
Q 036510 6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTS------QHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDG 79 (288)
Q Consensus 6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~ 79 (288)
+..|...-+.|..|||||+||++||.||.|.+|+...+.. +.-..+--|.++|.++.|+++ .+.|++|+.||
T Consensus 208 IKFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRD--sEMlAsGsqDG 285 (508)
T KOG0275|consen 208 IKFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRD--SEMLASGSQDG 285 (508)
T ss_pred eecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeeccc--HHHhhccCcCC
Confidence 4557778888999999999999999999999999854321 111234458899999999986 78999999999
Q ss_pred cEEEeecCCCCceEEeEEee-cCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeC
Q 036510 80 TVIIWKEGNSNEWIKDHVFE-DHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWA 158 (288)
Q Consensus 80 ~v~iwd~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~ 158 (288)
.|++|.+.++.+ .+.+. .|...|+|++|+.|+ ..+++++.|.++++.-++.+..+ +...+|..-|....|.
T Consensus 286 kIKvWri~tG~C---lRrFdrAHtkGvt~l~FSrD~--SqiLS~sfD~tvRiHGlKSGK~L---KEfrGHsSyvn~a~ft 357 (508)
T KOG0275|consen 286 KIKVWRIETGQC---LRRFDRAHTKGVTCLSFSRDN--SQILSASFDQTVRIHGLKSGKCL---KEFRGHSSYVNEATFT 357 (508)
T ss_pred cEEEEEEecchH---HHHhhhhhccCeeEEEEccCc--chhhcccccceEEEeccccchhH---HHhcCccccccceEEc
Confidence 999999988874 33343 799999999999984 46789999999999888776443 3346899899999998
Q ss_pred CCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccc--cCCcceEEEEecCCCCCCCcEEEEEeCCCc
Q 036510 159 PSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQ--MHTDWVRDVAWAPNLGLPKSTIASASEDGK 236 (288)
Q Consensus 159 p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~ 236 (288)
+++ +.+++++.|++|++|+..+. +|..+++ +-..+|++|..-|.. +..++.+...++
T Consensus 358 ~dG--------------~~iisaSsDgtvkvW~~Ktt----eC~~Tfk~~~~d~~vnsv~~~PKn---peh~iVCNrsnt 416 (508)
T KOG0275|consen 358 DDG--------------HHIISASSDGTVKVWHGKTT----ECLSTFKPLGTDYPVNSVILLPKN---PEHFIVCNRSNT 416 (508)
T ss_pred CCC--------------CeEEEecCCccEEEecCcch----hhhhhccCCCCcccceeEEEcCCC---CceEEEEcCCCe
Confidence 887 78999999999999999876 4555553 445579999998864 456888999999
Q ss_pred EEEEEeecCCCcccceEee-c--cccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510 237 VIIWTVAREGDQWEGKVLH-D--FKTPVYRVSWSLTGNILAVADGNNNVTLWE 286 (288)
Q Consensus 237 i~iw~~~~~~~~~~~~~~~-~--~~~~i~~~~~spdg~~l~s~~~d~~v~~w~ 286 (288)
|.|-+++-. ..+.+. + -++.-.++..||.|.++...+.|+.+..+.
T Consensus 417 v~imn~qGQ----vVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~ 465 (508)
T KOG0275|consen 417 VYIMNMQGQ----VVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFS 465 (508)
T ss_pred EEEEeccce----EEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEE
Confidence 999987621 111111 1 124567889999999999999999888775
No 88
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=3.5e-26 Score=192.84 Aligned_cols=247 Identities=21% Similarity=0.302 Sum_probs=191.9
Q ss_pred cccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCce---------------eeEEE-eccccCeEEEEecCCCCCCE
Q 036510 8 TGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQ---------------HLAKL-SGHKGAVWEVAWAHPKFGSI 71 (288)
Q Consensus 8 ~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~---------------~~~~~-~~h~~~v~~~~~~~~~~~~~ 71 (288)
-.|.-.|.++.++|++++.++++.|++|.=|++..+... .+..- .+|...+.+++.+++ +.+
T Consensus 139 ~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~D--gky 216 (479)
T KOG0299|consen 139 GKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSD--GKY 216 (479)
T ss_pred ccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCC--CcE
Confidence 378999999999999999999999999999987432100 00011 378888999999865 999
Q ss_pred EEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCC
Q 036510 72 LASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVG 151 (288)
Q Consensus 72 l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~ 151 (288)
|++|+.|..|.||+..+.+ .++.+++|++.|.+++|-.. ...+.+++.|+++++|++.... ....+-+|+..
T Consensus 217 latgg~d~~v~Iw~~~t~e---hv~~~~ghr~~V~~L~fr~g--t~~lys~s~Drsvkvw~~~~~s---~vetlyGHqd~ 288 (479)
T KOG0299|consen 217 LATGGRDRHVQIWDCDTLE---HVKVFKGHRGAVSSLAFRKG--TSELYSASADRSVKVWSIDQLS---YVETLYGHQDG 288 (479)
T ss_pred EEecCCCceEEEecCcccc---hhhcccccccceeeeeeecC--ccceeeeecCCceEEEehhHhH---HHHHHhCCccc
Confidence 9999999999999987765 45668999999999999654 3357889999999999987532 22344589888
Q ss_pred eeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEE
Q 036510 152 VTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASA 231 (288)
Q Consensus 152 v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~ 231 (288)
|..|+-.... +.+..|+.|+++++|++.+.. .-.+.+|.+.+.||+|-.+ ..+++|
T Consensus 289 v~~IdaL~re--------------R~vtVGgrDrT~rlwKi~ees-----qlifrg~~~sidcv~~In~-----~HfvsG 344 (479)
T KOG0299|consen 289 VLGIDALSRE--------------RCVTVGGRDRTVRLWKIPEES-----QLIFRGGEGSIDCVAFIND-----EHFVSG 344 (479)
T ss_pred eeeechhccc--------------ceEEeccccceeEEEeccccc-----eeeeeCCCCCeeeEEEecc-----cceeec
Confidence 9888654332 556677799999999995532 2245788889999999876 469999
Q ss_pred eCCCcEEEEEeecCCCcccceEeecc---------ccCeEEEEeecCCCEEEEEeCCCcEEEeEcC
Q 036510 232 SEDGKVIIWTVAREGDQWEGKVLHDF---------KTPVYRVSWSLTGNILAVADGNNNVTLWEEA 288 (288)
Q Consensus 232 s~D~~i~iw~~~~~~~~~~~~~~~~~---------~~~i~~~~~spdg~~l~s~~~d~~v~~w~~~ 288 (288)
|+||.|.+|++.+++........|+. ..+|++++-.|...++|+||.+|.||||.++
T Consensus 345 SdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~ 410 (479)
T KOG0299|consen 345 SDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIE 410 (479)
T ss_pred cCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEec
Confidence 99999999999865432222222321 1289999999999999999999999999864
No 89
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.5e-26 Score=194.96 Aligned_cols=241 Identities=17% Similarity=0.228 Sum_probs=187.7
Q ss_pred ccceEEEEEcCCCCE-EEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCC
Q 036510 11 EDTVHDVAMDYYGKR-LATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNS 89 (288)
Q Consensus 11 ~~~v~~~~~s~~g~~-l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~ 89 (288)
...|.+++|+|.-.+ +|.+| ...+.||+... .....++.-.+..|+++.|-+| |.+|+.|.+.|.|+|+|+.+.
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~--~~~~k~~srFk~~v~s~~fR~D--G~LlaaGD~sG~V~vfD~k~r 100 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVT--RSVRKTFSRFKDVVYSVDFRSD--GRLLAAGDESGHVKVFDMKSR 100 (487)
T ss_pred cCcceeEecCCCCCCceEEec-ccEEEEEecch--hhhhhhHHhhccceeEEEeecC--CeEEEccCCcCcEEEeccccH
Confidence 468999999996433 33333 24678887632 2345556667888999999754 999999999999999996432
Q ss_pred CceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecc
Q 036510 90 NEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGS 169 (288)
Q Consensus 90 ~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~ 169 (288)
. ..+.+.+|..+|..+.|+|.+ +..+++|+.|+.+++||+.+.. ......+|++-|.+.+|+|...
T Consensus 101 ~---iLR~~~ah~apv~~~~f~~~d-~t~l~s~sDd~v~k~~d~s~a~---v~~~l~~htDYVR~g~~~~~~~------- 166 (487)
T KOG0310|consen 101 V---ILRQLYAHQAPVHVTKFSPQD-NTMLVSGSDDKVVKYWDLSTAY---VQAELSGHTDYVRCGDISPAND------- 166 (487)
T ss_pred H---HHHHHhhccCceeEEEecccC-CeEEEecCCCceEEEEEcCCcE---EEEEecCCcceeEeeccccCCC-------
Confidence 1 234577899999999999986 6779999999999999997653 2335679999999999999763
Q ss_pred cccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcc
Q 036510 170 GFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQW 249 (288)
Q Consensus 170 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~ 249 (288)
+.++|||.|+.||+||++... ..+.+ -.|..+|.+|.|-|. +++||+++. +.+|+||+....+.
T Consensus 167 ------hivvtGsYDg~vrl~DtR~~~---~~v~e-lnhg~pVe~vl~lps----gs~iasAgG-n~vkVWDl~~G~ql- 230 (487)
T KOG0310|consen 167 ------HIVVTGSYDGKVRLWDTRSLT---SRVVE-LNHGCPVESVLALPS----GSLIASAGG-NSVKVWDLTTGGQL- 230 (487)
T ss_pred ------eEEEecCCCceEEEEEeccCC---ceeEE-ecCCCceeeEEEcCC----CCEEEEcCC-CeEEEEEecCCcee-
Confidence 789999999999999998752 12223 348889999999996 367877765 48999999854321
Q ss_pred cceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510 250 EGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 250 ~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~ 287 (288)
......|.+.|+|+.+.-+++.|++|+.|+.|++||+
T Consensus 231 -l~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~ 267 (487)
T KOG0310|consen 231 -LTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDT 267 (487)
T ss_pred -hhhhhcccceEEEEEeecCCceEeecccccceEEEEc
Confidence 2233447889999999999999999999999999984
No 90
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=1.3e-25 Score=188.32 Aligned_cols=241 Identities=21% Similarity=0.317 Sum_probs=191.2
Q ss_pred cceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCc
Q 036510 12 DTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNE 91 (288)
Q Consensus 12 ~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~ 91 (288)
..+..+...+..+.+++|+.|+++-++|... .+.+.++.||...|+.+.|+++ ...++++|.|..|+||......+
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s--~q~l~~~~Gh~kki~~v~~~~~--~~~v~~aSad~~i~vws~~~~s~ 295 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPS--NQILATLKGHTKKITSVKFHKD--LDTVITASADEIIRVWSVPLSSE 295 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecch--hhhhhhccCcceEEEEEEeccc--hhheeecCCcceEEeeccccccC
Confidence 4556666666667899999999999999753 4668899999999999999764 67889999999999998765542
Q ss_pred eEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccc
Q 036510 92 WIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGF 171 (288)
Q Consensus 92 ~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~ 171 (288)
......|..+|+.+..||. +.+++++++|++..+.|++.+..+-.. ..+.....+++..|.|++
T Consensus 296 ---~~~~~~h~~~V~~ls~h~t--geYllsAs~d~~w~Fsd~~~g~~lt~v-s~~~s~v~~ts~~fHpDg---------- 359 (506)
T KOG0289|consen 296 ---PTSSRPHEEPVTGLSLHPT--GEYLLSASNDGTWAFSDISSGSQLTVV-SDETSDVEYTSAAFHPDG---------- 359 (506)
T ss_pred ---ccccccccccceeeeeccC--CcEEEEecCCceEEEEEccCCcEEEEE-eeccccceeEEeeEcCCc----------
Confidence 2334569999999999997 789999999999999999887654322 222344668999999998
Q ss_pred cCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccc
Q 036510 172 LDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEG 251 (288)
Q Consensus 172 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~ 251 (288)
..|.+|..|+.++|||+.++. -...+.+|.++|.+++|+.+ +.++|++++|+.|++||+++-... .
T Consensus 360 ----Lifgtgt~d~~vkiwdlks~~----~~a~Fpght~~vk~i~FsEN----GY~Lat~add~~V~lwDLRKl~n~--k 425 (506)
T KOG0289|consen 360 ----LIFGTGTPDGVVKIWDLKSQT----NVAKFPGHTGPVKAISFSEN----GYWLATAADDGSVKLWDLRKLKNF--K 425 (506)
T ss_pred ----eEEeccCCCceEEEEEcCCcc----ccccCCCCCCceeEEEeccC----ceEEEEEecCCeEEEEEehhhccc--c
Confidence 679999999999999998763 35567889999999999998 479999999999999999864321 1
Q ss_pred eEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510 252 KVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE 286 (288)
Q Consensus 252 ~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~ 286 (288)
+..-+-...+.++.|.+.|++|+.++.|=.|++++
T Consensus 426 t~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 426 TIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICK 460 (506)
T ss_pred eeeccccccceeEEEcCCCCeEEeecceeEEEEEe
Confidence 21112223699999999999999997665555544
No 91
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=4.3e-26 Score=191.55 Aligned_cols=234 Identities=22% Similarity=0.330 Sum_probs=181.9
Q ss_pred CCCEEEEeeCCCcEEEEEeCCCC-ceeeEE------------------EeccccCeEEEEecCCCCCCEEEEeeCCCcEE
Q 036510 22 YGKRLATASSDYSIKIIGVGNNT-SQHLAK------------------LSGHKGAVWEVAWAHPKFGSILASCSFDGTVI 82 (288)
Q Consensus 22 ~g~~l~s~~~d~~i~lwd~~~~~-~~~~~~------------------~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~ 82 (288)
.|+|+|-|..|..|.|||++-.. ..+..+ ..+|++.|-++.|... ..++|+|||.|.+|+
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~-~~nVLaSgsaD~TV~ 269 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRN-FRNVLASGSADKTVK 269 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccc-cceeEEecCCCceEE
Confidence 37899999999999999986211 111122 2379999999998865 467999999999999
Q ss_pred EeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCee-eEEeeccCCCCeeEEEeCCCC
Q 036510 83 IWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWD-TSRIDQAHPVGVTSVSWAPST 161 (288)
Q Consensus 83 iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~-~~~~~~~~~~~v~~i~~~p~~ 161 (288)
+||+..++ +..++..|.++|.+++|+|.. ..+|++|+.|++++++|.|...... .+. ....|..+.|.|..
T Consensus 270 lWD~~~g~---p~~s~~~~~k~Vq~l~wh~~~-p~~LLsGs~D~~V~l~D~R~~~~s~~~wk----~~g~VEkv~w~~~s 341 (463)
T KOG0270|consen 270 LWDVDTGK---PKSSITHHGKKVQTLEWHPYE-PSVLLSGSYDGTVALKDCRDPSNSGKEWK----FDGEVEKVAWDPHS 341 (463)
T ss_pred EEEcCCCC---cceehhhcCCceeEEEecCCC-ceEEEeccccceEEeeeccCccccCceEE----eccceEEEEecCCC
Confidence 99998887 445677899999999999986 6779999999999999999533211 112 24568999999987
Q ss_pred CCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEE
Q 036510 162 APGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWT 241 (288)
Q Consensus 162 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~ 241 (288)
. ..+..+..||+++-+|+|... +++.++..|.+.|.++++++.. +.+++++|.|+.+++|+
T Consensus 342 e-------------~~f~~~tddG~v~~~D~R~~~---~~vwt~~AHd~~ISgl~~n~~~---p~~l~t~s~d~~Vklw~ 402 (463)
T KOG0270|consen 342 E-------------NSFFVSTDDGTVYYFDIRNPG---KPVWTLKAHDDEISGLSVNIQT---PGLLSTASTDKVVKLWK 402 (463)
T ss_pred c-------------eeEEEecCCceEEeeecCCCC---CceeEEEeccCCcceEEecCCC---CcceeeccccceEEEEe
Confidence 4 567778999999999999853 6778889999999999999874 67899999999999999
Q ss_pred eecCCCcccceEeeccc---cCeEEEEeecCCC-EEEEEeCCCcEEEeEc
Q 036510 242 VAREGDQWEGKVLHDFK---TPVYRVSWSLTGN-ILAVADGNNNVTLWEE 287 (288)
Q Consensus 242 ~~~~~~~~~~~~~~~~~---~~i~~~~~spdg~-~l~s~~~d~~v~~w~~ 287 (288)
+.... .+.++++. +...+.++.|+-. .+|.|+..+-++|||+
T Consensus 403 ~~~~~----~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~ 448 (463)
T KOG0270|consen 403 FDVDS----PKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDI 448 (463)
T ss_pred ecCCC----CcccccccccccceeecccCCCcceEEEecCccceEEEeec
Confidence 87432 12223322 2356677888765 4667777778999995
No 92
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.95 E-value=8.6e-26 Score=186.38 Aligned_cols=255 Identities=24% Similarity=0.421 Sum_probs=194.5
Q ss_pred ccccceEEEEEcCCC--CEEEEeeCCCcEEEEEeCCC--------------CceeeEEEeccccCeEEEEecCCCCCCEE
Q 036510 9 GHEDTVHDVAMDYYG--KRLATASSDYSIKIIGVGNN--------------TSQHLAKLSGHKGAVWEVAWAHPKFGSIL 72 (288)
Q Consensus 9 ~h~~~v~~~~~s~~g--~~l~s~~~d~~i~lwd~~~~--------------~~~~~~~~~~h~~~v~~~~~~~~~~~~~l 72 (288)
+|.+.++-+.-++-| .+.++=+..|.|+||++... ..+.++++.+|...=++|+||+-. -..|
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~-~g~L 227 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIK-TGRL 227 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccc-cccc
Confidence 688888888877765 55566666799999998421 125688999999999999999743 3468
Q ss_pred EEeeCCCcEEEeecCCCCceE-EeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCC
Q 036510 73 ASCSFDGTVIIWKEGNSNEWI-KDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVG 151 (288)
Q Consensus 73 ~s~s~d~~v~iwd~~~~~~~~-~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~ 151 (288)
+||..-+.|++|.+.++ .|. ....+.+|...|-.|.|+|.+. .++++|+-|++|+|||+|.+..-.. ...++|+..
T Consensus 228 lsGDc~~~I~lw~~~~g-~W~vd~~Pf~gH~~SVEDLqWSptE~-~vfaScS~DgsIrIWDiRs~~~~~~-~~~kAh~sD 304 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTG-SWKVDQRPFTGHTKSVEDLQWSPTED-GVFASCSCDGSIRIWDIRSGPKKAA-VSTKAHNSD 304 (440)
T ss_pred ccCccccceEeeeeccC-ceeecCccccccccchhhhccCCccC-ceEEeeecCceEEEEEecCCCccce-eEeeccCCc
Confidence 99999999999998874 442 3345667999999999999874 5699999999999999997632221 223789999
Q ss_pred eeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEE
Q 036510 152 VTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASA 231 (288)
Q Consensus 152 v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~ 231 (288)
|.-|+|+... .+|++|+.||+++|||++.-+.. ..+..++-|..+|++|.|+|.. .+.|+++
T Consensus 305 VNVISWnr~~--------------~lLasG~DdGt~~iwDLR~~~~~-~pVA~fk~Hk~pItsieW~p~e---~s~iaas 366 (440)
T KOG0302|consen 305 VNVISWNRRE--------------PLLASGGDDGTLSIWDLRQFKSG-QPVATFKYHKAPITSIEWHPHE---DSVIAAS 366 (440)
T ss_pred eeeEEccCCc--------------ceeeecCCCceEEEEEhhhccCC-CcceeEEeccCCeeEEEecccc---CceEEec
Confidence 9999999876 57999999999999999863222 3456778899999999999974 5789999
Q ss_pred eCCCcEEEEEeecCCC------ccc-------ceEe--eccccCeEEEEeecCC-CEEEEEeCCCcEEEeE
Q 036510 232 SEDGKVIIWTVAREGD------QWE-------GKVL--HDFKTPVYRVSWSLTG-NILAVADGNNNVTLWE 286 (288)
Q Consensus 232 s~D~~i~iw~~~~~~~------~~~-------~~~~--~~~~~~i~~~~~spdg-~~l~s~~~d~~v~~w~ 286 (288)
+.|..|.|||+....+ ... ..++ |.-++-+..+.|+++- -++++.+.||. +||.
T Consensus 367 g~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGf-nVfk 436 (440)
T KOG0302|consen 367 GEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF-NVFK 436 (440)
T ss_pred cCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccce-eEEE
Confidence 9999999999986432 100 1133 3334678889999985 46666666664 4554
No 93
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=7.4e-27 Score=207.63 Aligned_cols=240 Identities=22% Similarity=0.338 Sum_probs=188.8
Q ss_pred EEEEEcC-CCCEEEEeeCCCcEEEEEeCCC-CceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCce
Q 036510 15 HDVAMDY-YGKRLATASSDYSIKIIGVGNN-TSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEW 92 (288)
Q Consensus 15 ~~~~~s~-~g~~l~s~~~d~~i~lwd~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~ 92 (288)
..|+|.. +.++||+++..|.|.+||+... +.+.+..+..|+..++.+.|.. ....+|+|||.||+||+||++....
T Consensus 91 ~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~-tep~iliSGSQDg~vK~~DlR~~~S- 168 (839)
T KOG0269|consen 91 ADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHS-TEPNILISGSQDGTVKCWDLRSKKS- 168 (839)
T ss_pred hhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeecc-CCccEEEecCCCceEEEEeeecccc-
Confidence 3456664 4689999999999999999642 2355678899999999999965 4578999999999999999987653
Q ss_pred EEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceeccccc
Q 036510 93 IKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFL 172 (288)
Q Consensus 93 ~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~ 172 (288)
..++......|..+.|+|.. +..++++...|++++||+|....+. ....+|+++|.++.|+|+.
T Consensus 169 --~~t~~~nSESiRDV~fsp~~-~~~F~s~~dsG~lqlWDlRqp~r~~--~k~~AH~GpV~c~nwhPnr----------- 232 (839)
T KOG0269|consen 169 --KSTFRSNSESIRDVKFSPGY-GNKFASIHDSGYLQLWDLRQPDRCE--KKLTAHNGPVLCLNWHPNR----------- 232 (839)
T ss_pred --cccccccchhhhceeeccCC-CceEEEecCCceEEEeeccCchhHH--HHhhcccCceEEEeecCCC-----------
Confidence 23444566789999999986 7789999999999999999865542 3456899999999999976
Q ss_pred CCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeC--CCcEEEEEeecCCCccc
Q 036510 173 DPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASE--DGKVIIWTVAREGDQWE 250 (288)
Q Consensus 173 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~--D~~i~iw~~~~~~~~~~ 250 (288)
.+|+|||.|++|||||+..+.. +..+++. -..+|.+|.|-|.. ...||+++. |-.|+|||++.+.-+
T Consensus 233 ---~~lATGGRDK~vkiWd~t~~~~--~~~~tIn-Tiapv~rVkWRP~~---~~hLAtcsmv~dtsV~VWDvrRPYIP-- 301 (839)
T KOG0269|consen 233 ---EWLATGGRDKMVKIWDMTDSRA--KPKHTIN-TIAPVGRVKWRPAR---SYHLATCSMVVDTSVHVWDVRRPYIP-- 301 (839)
T ss_pred ---ceeeecCCCccEEEEeccCCCc--cceeEEe-ecceeeeeeeccCc---cchhhhhhccccceEEEEeecccccc--
Confidence 7899999999999999975421 2222222 24579999999985 467888875 778999999976433
Q ss_pred ceEeeccccCeEEEEeec-CCCEEEEEeCCCcEE
Q 036510 251 GKVLHDFKTPVYRVSWSL-TGNILAVADGNNNVT 283 (288)
Q Consensus 251 ~~~~~~~~~~i~~~~~sp-dg~~l~s~~~d~~v~ 283 (288)
...+.+|...++.++|-. |...|.+++.|++|.
T Consensus 302 ~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 302 YATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVL 335 (839)
T ss_pred ceeeeccCccccceeccCCCceeeEeecCccHHH
Confidence 244567778889999965 556789999999874
No 94
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=2.5e-25 Score=179.35 Aligned_cols=245 Identities=22% Similarity=0.342 Sum_probs=174.2
Q ss_pred CCCCcc--ccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCC
Q 036510 1 MPPQKI--ETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFD 78 (288)
Q Consensus 1 ~~~~~~--~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d 78 (288)
|++++. ...-++.|..++|+|.++.|+.+++||++++||+.... +...-.|..++.+++|-. ...+++|+.|
T Consensus 1 ~~~~~~~l~npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~---l~~~~~~~~plL~c~F~d---~~~~~~G~~d 74 (323)
T KOG1036|consen 1 MSPNEFELENPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANS---LKLKFKHGAPLLDCAFAD---ESTIVTGGLD 74 (323)
T ss_pred CCccccccCCCChhceeeEEEcCcCCcEEEEeccCcEEEEeccchh---hhhheecCCceeeeeccC---CceEEEeccC
Confidence 455543 33458999999999988899999999999999996542 222335899999999953 5789999999
Q ss_pred CcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCC---eee-------------E
Q 036510 79 GTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGG---WDT-------------S 142 (288)
Q Consensus 79 ~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~---~~~-------------~ 142 (288)
|.|+.+|+..++. ..+..|..+|.|+...+- ...+++|++|++|++||.|.... .+. .
T Consensus 75 g~vr~~Dln~~~~----~~igth~~~i~ci~~~~~--~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~L 148 (323)
T KOG1036|consen 75 GQVRRYDLNTGNE----DQIGTHDEGIRCIEYSYE--VGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRL 148 (323)
T ss_pred ceEEEEEecCCcc----eeeccCCCceEEEEeecc--CCeEEEcccCccEEEEeccccccccccccCceEEEEeccCCEE
Confidence 9999999976653 345679999999999975 34689999999999999983211 000 0
Q ss_pred Ee----------------------eccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCC-----
Q 036510 143 RI----------------------DQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNG----- 195 (288)
Q Consensus 143 ~~----------------------~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~----- 195 (288)
.+ ....+.+++++...|+. .-++.+|.||.|.+=.....
T Consensus 149 vVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~--------------eGy~~sSieGRVavE~~d~s~~~~s 214 (323)
T KOG1036|consen 149 VVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNG--------------EGYVVSSIEGRVAVEYFDDSEEAQS 214 (323)
T ss_pred EEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCC--------------CceEEEeecceEEEEccCCchHHhh
Confidence 00 00112334555555532 33677888998876333222
Q ss_pred -ceeeeeeeccccC---CcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCC
Q 036510 196 -IWKMDCFPALQMH---TDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGN 271 (288)
Q Consensus 196 -~~~~~~~~~~~~h---~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~ 271 (288)
.+.++|....... -.+|++++|+|-. ++||||+.||.|-+||+..++ ....++++...|.+++|+-||.
T Consensus 215 kkyaFkCHr~~~~~~~~~yPVNai~Fhp~~----~tfaTgGsDG~V~~Wd~~~rK---rl~q~~~~~~SI~slsfs~dG~ 287 (323)
T KOG1036|consen 215 KKYAFKCHRLSEKDTEIIYPVNAIAFHPIH----GTFATGGSDGIVNIWDLFNRK---RLKQLAKYETSISSLSFSMDGS 287 (323)
T ss_pred hceeEEeeecccCCceEEEEeceeEecccc----ceEEecCCCceEEEccCcchh---hhhhccCCCCceEEEEeccCCC
Confidence 2233443322211 2279999999953 589999999999999998643 2344567777899999999999
Q ss_pred EEEEEeC
Q 036510 272 ILAVADG 278 (288)
Q Consensus 272 ~l~s~~~ 278 (288)
.||.|++
T Consensus 288 ~LAia~s 294 (323)
T KOG1036|consen 288 LLAIASS 294 (323)
T ss_pred eEEEEec
Confidence 9999975
No 95
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=5e-25 Score=184.78 Aligned_cols=248 Identities=20% Similarity=0.246 Sum_probs=193.4
Q ss_pred cccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEee
Q 036510 6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK 85 (288)
Q Consensus 6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd 85 (288)
++.||+..|..+.|+++...+++++.|..|++|.+... ........|..+|+.+.-.+ .|+||+++|.|++....|
T Consensus 256 ~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~--s~~~~~~~h~~~V~~ls~h~--tgeYllsAs~d~~w~Fsd 331 (506)
T KOG0289|consen 256 TLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLS--SEPTSSRPHEEPVTGLSLHP--TGEYLLSASNDGTWAFSD 331 (506)
T ss_pred hccCcceEEEEEEeccchhheeecCCcceEEeeccccc--cCccccccccccceeeeecc--CCcEEEEecCCceEEEEE
Confidence 57799999999999999999999999999999988543 34555678999999999743 489999999999999999
Q ss_pred cCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCc
Q 036510 86 EGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGA 165 (288)
Q Consensus 86 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~ 165 (288)
++++...... .-....-.+++..|||| +.++++|..|+.++|||++.+.. .....+|..+|..|+|+.++
T Consensus 332 ~~~g~~lt~v-s~~~s~v~~ts~~fHpD--gLifgtgt~d~~vkiwdlks~~~---~a~Fpght~~vk~i~FsENG---- 401 (506)
T KOG0289|consen 332 ISSGSQLTVV-SDETSDVEYTSAAFHPD--GLIFGTGTPDGVVKIWDLKSQTN---VAKFPGHTGPVKAISFSENG---- 401 (506)
T ss_pred ccCCcEEEEE-eeccccceeEEeeEcCC--ceEEeccCCCceEEEEEcCCccc---cccCCCCCCceeEEEeccCc----
Confidence 9887643221 11111234899999999 78999999999999999987643 23445799999999999887
Q ss_pred eecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccc-cCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeec
Q 036510 166 LVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQ-MHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAR 244 (288)
Q Consensus 166 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~ 244 (288)
.+|+++..|+.|++||++.-. -.+++. .-...|.+++|.+. +++++.++.|=.|.+++ +
T Consensus 402 ----------Y~Lat~add~~V~lwDLRKl~----n~kt~~l~~~~~v~s~~fD~S----Gt~L~~~g~~l~Vy~~~--k 461 (506)
T KOG0289|consen 402 ----------YWLATAADDGSVKLWDLRKLK----NFKTIQLDEKKEVNSLSFDQS----GTYLGIAGSDLQVYICK--K 461 (506)
T ss_pred ----------eEEEEEecCCeEEEEEehhhc----ccceeeccccccceeEEEcCC----CCeEEeecceeEEEEEe--c
Confidence 889999999999999998642 222221 11225899999886 47898887775555554 3
Q ss_pred CCCcccc-eEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510 245 EGDQWEG-KVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 245 ~~~~~~~-~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~ 287 (288)
....|.. ..++.+.+..+.+.|...-+++++++-|.+++|+.+
T Consensus 462 ~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 462 KTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 3223322 344566678899999999999999999999999864
No 96
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=2.7e-27 Score=209.06 Aligned_cols=236 Identities=22% Similarity=0.363 Sum_probs=196.8
Q ss_pred ccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeec
Q 036510 7 ETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE 86 (288)
Q Consensus 7 ~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~ 86 (288)
+..|...|.++..-..++.+++|+.|..+.||.+..+ -.+..|.+|..+|-++.|+.+ ..+|+.|+++|+||+||+
T Consensus 24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp--~~i~S~~~hespIeSl~f~~~--E~LlaagsasgtiK~wDl 99 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKP--NAITSLTGHESPIESLTFDTS--ERLLAAGSASGTIKVWDL 99 (825)
T ss_pred hhhhhhhhceeeeeccceeeccCCCceeeccccccCC--chhheeeccCCcceeeecCcc--hhhhcccccCCceeeeeh
Confidence 4478889999988667899999999999999987543 335568999999999999764 679999999999999999
Q ss_pred CCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCce
Q 036510 87 GNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGAL 166 (288)
Q Consensus 87 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~ 166 (288)
..+. ..+++.+|...+.++.|||- +.+.|+|+.|..+.+||++..++. ..+.+|+..+..+.|+|++
T Consensus 100 eeAk---~vrtLtgh~~~~~sv~f~P~--~~~~a~gStdtd~~iwD~Rk~Gc~---~~~~s~~~vv~~l~lsP~G----- 166 (825)
T KOG0267|consen 100 EEAK---IVRTLTGHLLNITSVDFHPY--GEFFASGSTDTDLKIWDIRKKGCS---HTYKSHTRVVDVLRLSPDG----- 166 (825)
T ss_pred hhhh---hhhhhhccccCcceeeeccc--eEEeccccccccceehhhhccCce---eeecCCcceeEEEeecCCC-----
Confidence 8665 45678899999999999997 678899999999999999976653 3445699899999999997
Q ss_pred ecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCC
Q 036510 167 VGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREG 246 (288)
Q Consensus 167 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~ 246 (288)
..+++|+.|.+++|||...| ++...+..|...|.++.|+|.. -++++||.|+++++||++.-.
T Consensus 167 ---------r~v~~g~ed~tvki~d~~ag----k~~~ef~~~e~~v~sle~hp~e----~Lla~Gs~d~tv~f~dletfe 229 (825)
T KOG0267|consen 167 ---------RWVASGGEDNTVKIWDLTAG----KLSKEFKSHEGKVQSLEFHPLE----VLLAPGSSDRTVRFWDLETFE 229 (825)
T ss_pred ---------ceeeccCCcceeeeeccccc----ccccccccccccccccccCchh----hhhccCCCCceeeeeccceeE
Confidence 78999999999999999876 5677889999999999999973 579999999999999987321
Q ss_pred CcccceEeeccccCeEEEEeecCCCEEEEEeCC
Q 036510 247 DQWEGKVLHDFKTPVYRVSWSLTGNILAVADGN 279 (288)
Q Consensus 247 ~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d 279 (288)
........-..|.+.+|+|+|..+++|...
T Consensus 230 ---~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 230 ---VISSGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred ---EeeccCCccCCceeeeecCCceeeecCchh
Confidence 111112334579999999999999998653
No 97
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=5.3e-25 Score=195.36 Aligned_cols=198 Identities=19% Similarity=0.254 Sum_probs=158.7
Q ss_pred CeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCC
Q 036510 57 AVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARAD 136 (288)
Q Consensus 57 ~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~ 136 (288)
-+.+..|.|- +.+++.|...|.+.++|+.... ...++..|.+.|++++..||+ ..+++|+.|++|++||+...
T Consensus 414 y~l~~~Fvpg--d~~Iv~G~k~Gel~vfdlaS~~---l~Eti~AHdgaIWsi~~~pD~--~g~vT~saDktVkfWdf~l~ 486 (888)
T KOG0306|consen 414 YILASKFVPG--DRYIVLGTKNGELQVFDLASAS---LVETIRAHDGAIWSISLSPDN--KGFVTGSADKTVKFWDFKLV 486 (888)
T ss_pred cEEEEEecCC--CceEEEeccCCceEEEEeehhh---hhhhhhccccceeeeeecCCC--CceEEecCCcEEEEEeEEEE
Confidence 4566677653 6899999999999999998765 345567899999999999994 55799999999999998531
Q ss_pred CC---ee-e-EEe----eccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeecccc
Q 036510 137 GG---WD-T-SRI----DQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQM 207 (288)
Q Consensus 137 ~~---~~-~-~~~----~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 207 (288)
.. .+ . ... .-.-+..|.|+.+||++ .+||.+--|++|++|=+.+ ++..-++-|
T Consensus 487 ~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdg--------------k~LaVsLLdnTVkVyflDt----lKFflsLYG 548 (888)
T KOG0306|consen 487 VSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDG--------------KLLAVSLLDNTVKVYFLDT----LKFFLSLYG 548 (888)
T ss_pred eccCcccceeeeeccceEEeccccEEEEEEcCCC--------------cEEEEEeccCeEEEEEecc----eeeeeeecc
Confidence 11 01 0 000 01235679999999998 7899999999999998875 356668899
Q ss_pred CCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510 208 HTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE 286 (288)
Q Consensus 208 h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~ 286 (288)
|+-+|.|++.|||+ ++++|||.|++|+||-+.-. + +. +.++.|...|+++.|-|+...|-+++.|+.|+-||
T Consensus 549 HkLPV~smDIS~DS----klivTgSADKnVKiWGLdFG-D-CH-KS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWD 620 (888)
T KOG0306|consen 549 HKLPVLSMDISPDS----KLIVTGSADKNVKIWGLDFG-D-CH-KSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWD 620 (888)
T ss_pred cccceeEEeccCCc----CeEEeccCCCceEEeccccc-h-hh-hhhhcccCceeEEEEcccceeEEEecCcceEEeec
Confidence 99999999999986 68999999999999987632 1 12 34567788999999999999999999999999997
No 98
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.5e-25 Score=199.37 Aligned_cols=248 Identities=22% Similarity=0.401 Sum_probs=184.4
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCc--eeeEEEe---ccccCeEEEEecCCCCCCEEEEeeCCCcEEEee
Q 036510 11 EDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTS--QHLAKLS---GHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK 85 (288)
Q Consensus 11 ~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~--~~~~~~~---~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd 85 (288)
+.....|+..++-..|+.++.. ..+||.+..... ++..... .-...+..+.|. ....++|++++..|.|.+||
T Consensus 39 k~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~-~~~~NlIAT~s~nG~i~vWd 116 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWG-QLYSNLIATCSTNGVISVWD 116 (839)
T ss_pred ccccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccc-cchhhhheeecCCCcEEEEe
Confidence 4555677788888888877754 678887753221 2221111 122345678886 34678999999999999999
Q ss_pred cCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCc
Q 036510 86 EGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGA 165 (288)
Q Consensus 86 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~ 165 (288)
+.....-.+...+..|...+++++||+-+ ..+|++|++||.|++||+|.......+. +....|+.++|+|...
T Consensus 117 lnk~~rnk~l~~f~EH~Rs~~~ldfh~te-p~iliSGSQDg~vK~~DlR~~~S~~t~~---~nSESiRDV~fsp~~~--- 189 (839)
T KOG0269|consen 117 LNKSIRNKLLTVFNEHERSANKLDFHSTE-PNILISGSQDGTVKCWDLRSKKSKSTFR---SNSESIRDVKFSPGYG--- 189 (839)
T ss_pred cCccccchhhhHhhhhccceeeeeeccCC-ccEEEecCCCceEEEEeeeccccccccc---ccchhhhceeeccCCC---
Confidence 85421112334577899999999999986 5689999999999999999765433322 3456799999999863
Q ss_pred eecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecC
Q 036510 166 LVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVARE 245 (288)
Q Consensus 166 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~ 245 (288)
..|+++...|.+.+||++... .+...+.+|.++|.|+.|+|+. .+||||+.|+.|+||+....
T Consensus 190 ----------~~F~s~~dsG~lqlWDlRqp~---r~~~k~~AH~GpV~c~nwhPnr----~~lATGGRDK~vkiWd~t~~ 252 (839)
T KOG0269|consen 190 ----------NKFASIHDSGYLQLWDLRQPD---RCEKKLTAHNGPVLCLNWHPNR----EWLATGGRDKMVKIWDMTDS 252 (839)
T ss_pred ----------ceEEEecCCceEEEeeccCch---hHHHHhhcccCceEEEeecCCC----ceeeecCCCccEEEEeccCC
Confidence 789999999999999998743 4455678999999999999974 68999999999999998854
Q ss_pred CCcccceEeecc--ccCeEEEEeecCCCE-EEEEe--CCCcEEEeEcC
Q 036510 246 GDQWEGKVLHDF--KTPVYRVSWSLTGNI-LAVAD--GNNNVTLWEEA 288 (288)
Q Consensus 246 ~~~~~~~~~~~~--~~~i~~~~~spdg~~-l~s~~--~d~~v~~w~~~ 288 (288)
.. ...+.. ..||.+|+|=|+-++ ||+++ .|-.|+|||++
T Consensus 253 ~~----~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvr 296 (839)
T KOG0269|consen 253 RA----KPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVR 296 (839)
T ss_pred Cc----cceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeec
Confidence 21 122222 468999999998765 56554 37889999974
No 99
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=6.8e-25 Score=193.15 Aligned_cols=232 Identities=22% Similarity=0.351 Sum_probs=184.2
Q ss_pred cccccceEE-EEEcC-CCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEee
Q 036510 8 TGHEDTVHD-VAMDY-YGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK 85 (288)
Q Consensus 8 ~~h~~~v~~-~~~s~-~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd 85 (288)
.+|.+.|.. +++.+ ++-+|++|+.|.++.+|..... .++.+|.||+..|.++.... ++ .++|||.|.++++|-
T Consensus 54 ~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~--~P~~~LkgH~snVC~ls~~~--~~-~~iSgSWD~TakvW~ 128 (745)
T KOG0301|consen 54 EGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQA--EPLYTLKGHKSNVCSLSIGE--DG-TLISGSWDSTAKVWR 128 (745)
T ss_pred ccCcceeeccceeccccCcceEeecccceEEEEecCCC--CchhhhhccccceeeeecCC--cC-ceEecccccceEEec
Confidence 356777766 77765 3345899999999999998643 66899999999999998643 34 499999999999997
Q ss_pred cCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCc
Q 036510 86 EGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGA 165 (288)
Q Consensus 86 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~ 165 (288)
... +...+.+|...|+++..-|.+ .+++|+.|++|++|.-.+ ..+...+|++-|+.+..-|+.
T Consensus 129 ~~~-----l~~~l~gH~asVWAv~~l~e~---~~vTgsaDKtIklWk~~~-----~l~tf~gHtD~VRgL~vl~~~---- 191 (745)
T KOG0301|consen 129 IGE-----LVYSLQGHTASVWAVASLPEN---TYVTGSADKTIKLWKGGT-----LLKTFSGHTDCVRGLAVLDDS---- 191 (745)
T ss_pred chh-----hhcccCCcchheeeeeecCCC---cEEeccCcceeeeccCCc-----hhhhhccchhheeeeEEecCC----
Confidence 643 234578999999999998873 589999999999996422 234567899999999887763
Q ss_pred eecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecC
Q 036510 166 LVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVARE 245 (288)
Q Consensus 166 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~ 245 (288)
.|+|++-|+.|++|++.. +++..+.+|.+.|.++...++ .+.|+|++.|++++||+...
T Consensus 192 -----------~flScsNDg~Ir~w~~~g-----e~l~~~~ghtn~vYsis~~~~----~~~Ivs~gEDrtlriW~~~e- 250 (745)
T KOG0301|consen 192 -----------HFLSCSNDGSIRLWDLDG-----EVLLEMHGHTNFVYSISMALS----DGLIVSTGEDRTLRIWKKDE- 250 (745)
T ss_pred -----------CeEeecCCceEEEEeccC-----ceeeeeeccceEEEEEEecCC----CCeEEEecCCceEEEeecCc-
Confidence 489999999999999944 467778899999999995554 36899999999999998652
Q ss_pred CCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510 246 GDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 246 ~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~ 287 (288)
....+.-....|+++++-++|.+ ++|++||.||||-.
T Consensus 251 ----~~q~I~lPttsiWsa~~L~NgDI-vvg~SDG~VrVfT~ 287 (745)
T KOG0301|consen 251 ----CVQVITLPTTSIWSAKVLLNGDI-VVGGSDGRVRVFTV 287 (745)
T ss_pred ----eEEEEecCccceEEEEEeeCCCE-EEeccCceEEEEEe
Confidence 12333333457999999999987 67889999999963
No 100
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=3.8e-24 Score=172.18 Aligned_cols=241 Identities=18% Similarity=0.263 Sum_probs=177.4
Q ss_pred ccccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEe
Q 036510 5 KIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIW 84 (288)
Q Consensus 5 ~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iw 84 (288)
|....|+++|.+++|+.||+.+++|+.|+.+++||+..+ .+.+...|.++|..+.|.+...-..|++||.|+++|.|
T Consensus 66 ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~---Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfW 142 (347)
T KOG0647|consen 66 KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG---QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFW 142 (347)
T ss_pred hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC---CeeeeeecccceeEEEEecCCCcceeEecccccceeec
Confidence 445579999999999999999999999999999999643 46778899999999999865334689999999999999
Q ss_pred ecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCC
Q 036510 85 KEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPG 164 (288)
Q Consensus 85 d~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~ 164 (288)
|++..+. +.++.. ..++++++.- .-+++.+..++.|.+|+++++..... +....-+-+++||+..++.
T Consensus 143 D~R~~~p---v~t~~L-PeRvYa~Dv~----~pm~vVata~r~i~vynL~n~~te~k-~~~SpLk~Q~R~va~f~d~--- 210 (347)
T KOG0647|consen 143 DTRSSNP---VATLQL-PERVYAADVL----YPMAVVATAERHIAVYNLENPPTEFK-RIESPLKWQTRCVACFQDK--- 210 (347)
T ss_pred ccCCCCe---eeeeec-cceeeehhcc----CceeEEEecCCcEEEEEcCCCcchhh-hhcCcccceeeEEEEEecC---
Confidence 9998763 334433 3578888643 22467778899999999976422111 1111233457788766654
Q ss_pred ceecccccCCCceeEEeecCCcEEEEEEeCC----ceeeeeeeccc---cCCcceEEEEecCCCCCCCcEEEEEeCCCcE
Q 036510 165 ALVGSGFLDPVQKLCSGGCDNTVKVWKLYNG----IWKMDCFPALQ---MHTDWVRDVAWAPNLGLPKSTIASASEDGKV 237 (288)
Q Consensus 165 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~----~~~~~~~~~~~---~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i 237 (288)
...+-|+.+|.+-|-.+..+ .+.++|...-. +--..|++|+|+|.- .+||+++.||++
T Consensus 211 -----------~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~h----gtlvTaGsDGtf 275 (347)
T KOG0647|consen 211 -----------DGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVH----GTLVTAGSDGTF 275 (347)
T ss_pred -----------CceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeeccc----ceEEEecCCceE
Confidence 44588999999998887654 23345543211 112369999999973 579999999999
Q ss_pred EEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeC
Q 036510 238 IIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADG 278 (288)
Q Consensus 238 ~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~ 278 (288)
.+||-+.... ......+..+|+++.|+.+|.++|.+..
T Consensus 276 ~FWDkdar~k---Lk~s~~~~qpItcc~fn~~G~ifaYA~g 313 (347)
T KOG0647|consen 276 SFWDKDARTK---LKTSETHPQPITCCSFNRNGSIFAYALG 313 (347)
T ss_pred EEecchhhhh---hhccCcCCCccceeEecCCCCEEEEEee
Confidence 9999765321 2223446679999999999999999853
No 101
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=3.4e-23 Score=160.83 Aligned_cols=245 Identities=20% Similarity=0.281 Sum_probs=184.2
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCcEEEEEeCC----------CC---ceeeEEEeccccCeEEEEecCCCCCCEEEEeeC
Q 036510 11 EDTVHDVAMDYYGKRLATASSDYSIKIIGVGN----------NT---SQHLAKLSGHKGAVWEVAWAHPKFGSILASCSF 77 (288)
Q Consensus 11 ~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~----------~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~ 77 (288)
.+.|..++|.|.|.+.+.|++.+++|+.-... +. ........-|.++|++.+|++. |+++++||+
T Consensus 32 sqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~--geliatgsn 109 (350)
T KOG0641|consen 32 SQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPC--GELIATGSN 109 (350)
T ss_pred hhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCc--cCeEEecCC
Confidence 46788999999999999999999999974321 00 1123445678999999999975 999999999
Q ss_pred CCcEEEeecCCCCc--eEEeEEeecCCCceeEEEeccCC--CCeEEEEE-eCCCcEEEEeecCCCCeeeEEeeccCCCCe
Q 036510 78 DGTVIIWKEGNSNE--WIKDHVFEDHKSSVNSIDWAPHE--LGLCLACG-SSDGNISVFTARADGGWDTSRIDQAHPVGV 152 (288)
Q Consensus 78 d~~v~iwd~~~~~~--~~~~~~~~~h~~~v~~l~~~p~~--~~~~l~sg-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v 152 (288)
|++|++.-....++ ......+..|.+.|..++|-.+. .+.+|+++ ..|-+|++-|-.+++. ++-+.+|+..|
T Consensus 110 dk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~---~~a~sghtghi 186 (350)
T KOG0641|consen 110 DKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQG---FHALSGHTGHI 186 (350)
T ss_pred CceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCc---ceeecCCcccE
Confidence 99999975532211 11223466799999999995432 24566666 4455777767666544 45567899989
Q ss_pred eEE-EeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeecc----cc---CCcceEEEEecCCCCCC
Q 036510 153 TSV-SWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPAL----QM---HTDWVRDVAWAPNLGLP 224 (288)
Q Consensus 153 ~~i-~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~----~~---h~~~V~~v~~sp~~~~~ 224 (288)
.++ .|+. -++++|+.|++|++||++-+. ++..+ .+ -.+.|.+|+..|.
T Consensus 187 lalyswn~----------------~m~~sgsqdktirfwdlrv~~----~v~~l~~~~~~~glessavaav~vdps---- 242 (350)
T KOG0641|consen 187 LALYSWNG----------------AMFASGSQDKTIRFWDLRVNS----CVNTLDNDFHDGGLESSAVAAVAVDPS---- 242 (350)
T ss_pred EEEEEecC----------------cEEEccCCCceEEEEeeeccc----eeeeccCcccCCCcccceeEEEEECCC----
Confidence 887 5653 469999999999999998652 33332 11 1356999999997
Q ss_pred CcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510 225 KSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 225 ~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~ 287 (288)
+.+|++|-.|..+.+||++-. .....++.|...|.++-|||.-.++++++-|.+|+|=|+
T Consensus 243 grll~sg~~dssc~lydirg~---r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdl 302 (350)
T KOG0641|consen 243 GRLLASGHADSSCMLYDIRGG---RMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDL 302 (350)
T ss_pred cceeeeccCCCceEEEEeeCC---ceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeec
Confidence 478999999999999999843 234556788899999999999999999999999999774
No 102
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=2.2e-25 Score=195.01 Aligned_cols=250 Identities=19% Similarity=0.322 Sum_probs=203.6
Q ss_pred ccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeec
Q 036510 7 ETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE 86 (288)
Q Consensus 7 ~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~ 86 (288)
+..|.+.|+.+.+.-+|+.|.|+|.|-+|++|+......-+..++..|++-|.++++-. ++..++||||-|+.|.+||+
T Consensus 69 me~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~a-k~~~lvaSgGLD~~IflWDi 147 (735)
T KOG0308|consen 69 MEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIA-KNNELVASGGLDRKIFLWDI 147 (735)
T ss_pred hhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecc-cCceeEEecCCCccEEEEEc
Confidence 45799999999998889999999999999999986433356778899999999999832 35789999999999999999
Q ss_pred CCCCc-------eEEeEEee-cCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeC
Q 036510 87 GNSNE-------WIKDHVFE-DHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWA 158 (288)
Q Consensus 87 ~~~~~-------~~~~~~~~-~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~ 158 (288)
..+.. ......+. +++..|++++-++. +..+++|+..+-|++||.++....+ .+.+|+..|..+..+
T Consensus 148 n~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t--~t~ivsGgtek~lr~wDprt~~kim---kLrGHTdNVr~ll~~ 222 (735)
T KOG0308|consen 148 NTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQT--GTIIVSGGTEKDLRLWDPRTCKKIM---KLRGHTDNVRVLLVN 222 (735)
T ss_pred cCcchhhhhhccccccccCCCCCccceeeeecCCc--ceEEEecCcccceEEecccccccee---eeeccccceEEEEEc
Confidence 75522 11222343 78999999998876 6789999999999999999865433 345999999999988
Q ss_pred CCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEE
Q 036510 159 PSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVI 238 (288)
Q Consensus 159 p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~ 238 (288)
+++ +.++|+|.|++|++||+... +|+.++..|.+.|+++.-+|+. +.+-+|+.|+.|.
T Consensus 223 dDG--------------t~~ls~sSDgtIrlWdLgqQ----rCl~T~~vH~e~VWaL~~~~sf----~~vYsG~rd~~i~ 280 (735)
T KOG0308|consen 223 DDG--------------TRLLSASSDGTIRLWDLGQQ----RCLATYIVHKEGVWALQSSPSF----THVYSGGRDGNIY 280 (735)
T ss_pred CCC--------------CeEeecCCCceEEeeecccc----ceeeeEEeccCceEEEeeCCCc----ceEEecCCCCcEE
Confidence 887 78999999999999999753 7888899999999999999975 6899999999999
Q ss_pred EEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510 239 IWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 239 iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~ 287 (288)
.=|++... ....+.+-..||..+..+...+-+-++.-|++|+=|..
T Consensus 281 ~Tdl~n~~---~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~ 326 (735)
T KOG0308|consen 281 RTDLRNPA---KSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKL 326 (735)
T ss_pred ecccCCch---hheEeecCCCchhhhhhccccCCceeeeccccceecCC
Confidence 98887532 23445555667877887766666677888999998864
No 103
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=4.6e-25 Score=178.77 Aligned_cols=236 Identities=20% Similarity=0.365 Sum_probs=171.9
Q ss_pred CEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCC
Q 036510 24 KRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKS 103 (288)
Q Consensus 24 ~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~ 103 (288)
..|+|.-.|+++.. ..++.+.||++.||.++-... -.++.++|+|.+.+||.++++.+ ..++.+|.+
T Consensus 125 srivssFk~~t~~~--------~lvre~~GHkDGiW~Vaa~~t--qpi~gtASADhTA~iWs~Esg~C---L~~Y~GH~G 191 (481)
T KOG0300|consen 125 SRIVSSFKDGTVKF--------RLVRELEGHKDGIWHVAADST--QPICGTASADHTARIWSLESGAC---LATYTGHTG 191 (481)
T ss_pred chheeeecCCceeE--------eehhhhcccccceeeehhhcC--CcceeecccccceeEEeeccccc---eeeeccccc
Confidence 34666666666432 345668899999999996543 35899999999999999998874 456789999
Q ss_pred ceeEEEeccCCCCeEEEEEeCCCcEEEEee------cCCCC---eee---EE-------------eeccCCCCeeEEEeC
Q 036510 104 SVNSIDWAPHELGLCLACGSSDGNISVFTA------RADGG---WDT---SR-------------IDQAHPVGVTSVSWA 158 (288)
Q Consensus 104 ~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~------~~~~~---~~~---~~-------------~~~~~~~~v~~i~~~ 158 (288)
.|++++|++. +.++++++.|++-.||.. ..+.. ... .. ...+|+..+--+.+
T Consensus 192 SVNsikfh~s--~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~l- 268 (481)
T KOG0300|consen 192 SVNSIKFHNS--GLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRL- 268 (481)
T ss_pred ceeeEEeccc--cceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeee-
Confidence 9999999997 678999999999999962 11100 000 00 00001100000000
Q ss_pred CCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEE
Q 036510 159 PSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVI 238 (288)
Q Consensus 159 p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~ 238 (288)
.+..+.+..++....++.++++++|++-.+||++++ +.+..+.||....+-++-+|. ..++++.|.|-+.+
T Consensus 269 -tgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtg----e~v~~LtGHd~ELtHcstHpt----QrLVvTsSrDtTFR 339 (481)
T KOG0300|consen 269 -TGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETG----EVVNILTGHDSELTHCSTHPT----QRLVVTSSRDTTFR 339 (481)
T ss_pred -eccccceEehhhhcCcceeeeeeccccceeeeeccC----ceeccccCcchhccccccCCc----ceEEEEeccCceeE
Confidence 112233334445555688999999999999999998 578889999999999999997 46899999999999
Q ss_pred EEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510 239 IWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 239 iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~ 287 (288)
+||.+.. ......+.+|...|+++.|+-|.+ +++|+.|.+|+|||+
T Consensus 340 LWDFRea--I~sV~VFQGHtdtVTS~vF~~dd~-vVSgSDDrTvKvWdL 385 (481)
T KOG0300|consen 340 LWDFREA--IQSVAVFQGHTDTVTSVVFNTDDR-VVSGSDDRTVKVWDL 385 (481)
T ss_pred eccchhh--cceeeeecccccceeEEEEecCCc-eeecCCCceEEEeee
Confidence 9998743 223456778888999999987665 589999999999995
No 104
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.93 E-value=3.8e-25 Score=178.66 Aligned_cols=214 Identities=21% Similarity=0.313 Sum_probs=163.6
Q ss_pred eEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecC------C------CC---ceEEeEEeecCCCceeEEEecc
Q 036510 48 LAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEG------N------SN---EWIKDHVFEDHKSSVNSIDWAP 112 (288)
Q Consensus 48 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~------~------~~---~~~~~~~~~~h~~~v~~l~~~p 112 (288)
...+..|++++.+.+|+++ |.++++||.|.+|+|.|+. . +. ..+.++++..|.++|+++.|||
T Consensus 105 t~ylt~HK~~cR~aafs~D--G~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP 182 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPD--GSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP 182 (430)
T ss_pred eEEEeecccceeeeeeCCC--CcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc
Confidence 3556789999999999975 9999999999999999974 0 11 1235577889999999999999
Q ss_pred CCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEE
Q 036510 113 HELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKL 192 (288)
Q Consensus 113 ~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~ 192 (288)
. ...|++|+.|++|++||+.....-..++..+ ....|.+|+|.|.+ .+|+.|..-.++++||+
T Consensus 183 r--e~ILiS~srD~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfHPsG--------------efllvgTdHp~~rlYdv 245 (430)
T KOG0640|consen 183 R--ETILISGSRDNTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHPSG--------------EFLLVGTDHPTLRLYDV 245 (430)
T ss_pred h--hheEEeccCCCeEEEEecccHHHHHHHHHhh-ccceeeeEeecCCC--------------ceEEEecCCCceeEEec
Confidence 7 4679999999999999986532110011111 12358999999987 77888888889999999
Q ss_pred eCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeecc-ccCeEEEEeecCCC
Q 036510 193 YNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDF-KTPVYRVSWSLTGN 271 (288)
Q Consensus 193 ~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~-~~~i~~~~~spdg~ 271 (288)
.+-+.-.... .-.+|.+.|++|.+++. +++-++||.||.|++||--++ ++....-.-| ++.|.++.|..+|+
T Consensus 246 ~T~Qcfvsan-Pd~qht~ai~~V~Ys~t----~~lYvTaSkDG~IklwDGVS~--rCv~t~~~AH~gsevcSa~Ftkn~k 318 (430)
T KOG0640|consen 246 NTYQCFVSAN-PDDQHTGAITQVRYSST----GSLYVTASKDGAIKLWDGVSN--RCVRTIGNAHGGSEVCSAVFTKNGK 318 (430)
T ss_pred cceeEeeecC-cccccccceeEEEecCC----ccEEEEeccCCcEEeeccccH--HHHHHHHhhcCCceeeeEEEccCCe
Confidence 8753211111 23689999999999997 478999999999999985432 2221221223 35799999999999
Q ss_pred EEEEEeCCCcEEEeEc
Q 036510 272 ILAVADGNNNVTLWEE 287 (288)
Q Consensus 272 ~l~s~~~d~~v~~w~~ 287 (288)
++++.+.|.+|+||.+
T Consensus 319 yiLsSG~DS~vkLWEi 334 (430)
T KOG0640|consen 319 YILSSGKDSTVKLWEI 334 (430)
T ss_pred EEeecCCcceeeeeee
Confidence 9999999999999985
No 105
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=5.8e-24 Score=170.74 Aligned_cols=216 Identities=23% Similarity=0.408 Sum_probs=166.1
Q ss_pred ccccccccceEEEEEcC-CCCEEEEeeCCCcEEEEEeCCCCc--------eee-----EEEeccccCeEEEEecCCCCCC
Q 036510 5 KIETGHEDTVHDVAMDY-YGKRLATASSDYSIKIIGVGNNTS--------QHL-----AKLSGHKGAVWEVAWAHPKFGS 70 (288)
Q Consensus 5 ~~~~~h~~~v~~~~~s~-~g~~l~s~~~d~~i~lwd~~~~~~--------~~~-----~~~~~h~~~v~~~~~~~~~~~~ 70 (288)
.+...|.+.|+++...+ .|+|++||+.|+.|.+||+.+.+. +.+ ..-.+|+..|..+.|-| .+..
T Consensus 37 d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP-~DtG 115 (397)
T KOG4283|consen 37 DFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYP-IDTG 115 (397)
T ss_pred ceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEee-ecCc
Confidence 35668999999999987 589999999999999999964331 111 11247899999999975 3577
Q ss_pred EEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCe-EEEEEeCCCcEEEEeecCCCCeeeEEeeccCC
Q 036510 71 ILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGL-CLACGSSDGNISVFTARADGGWDTSRIDQAHP 149 (288)
Q Consensus 71 ~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~-~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~ 149 (288)
+|.|+|.|.++|+||..+..+ ...++ -.+.|++-+++|-.... ++|+|..|-.|++.|+..+.- .+.+++|.
T Consensus 116 mFtssSFDhtlKVWDtnTlQ~---a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~---sH~LsGHr 188 (397)
T KOG4283|consen 116 MFTSSSFDHTLKVWDTNTLQE---AVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSF---SHTLSGHR 188 (397)
T ss_pred eeecccccceEEEeeccccee---eEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcc---eeeecccc
Confidence 999999999999999765332 22333 34678888888875433 678888889999999987643 35678999
Q ss_pred CCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeee-----------eeeccccCCcceEEEEec
Q 036510 150 VGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMD-----------CFPALQMHTDWVRDVAWA 218 (288)
Q Consensus 150 ~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-----------~~~~~~~h~~~V~~v~~s 218 (288)
..|.++.|+|... -.|+||++|+.||+||++...-.+. ....-..|.+.|+.++|.
T Consensus 189 ~~vlaV~Wsp~~e-------------~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~t 255 (397)
T KOG4283|consen 189 DGVLAVEWSPSSE-------------WVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWT 255 (397)
T ss_pred CceEEEEeccCce-------------eEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeec
Confidence 9999999999872 5699999999999999975411111 111234688889999999
Q ss_pred CCCCCCCcEEEEEeCCCcEEEEEeecC
Q 036510 219 PNLGLPKSTIASASEDGKVIIWTVARE 245 (288)
Q Consensus 219 p~~~~~~~~l~s~s~D~~i~iw~~~~~ 245 (288)
.+. .++++.+.|..+++|+....
T Consensus 256 Sd~----~~l~~~gtd~r~r~wn~~~G 278 (397)
T KOG4283|consen 256 SDA----RYLASCGTDDRIRVWNMESG 278 (397)
T ss_pred ccc----hhhhhccCccceEEeecccC
Confidence 874 68999999999999998653
No 106
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=2e-24 Score=194.15 Aligned_cols=208 Identities=19% Similarity=0.273 Sum_probs=158.5
Q ss_pred CCccccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEE
Q 036510 3 PQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVI 82 (288)
Q Consensus 3 ~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~ 82 (288)
|...+.||.+.|.+|+||.++ +|+|+|.|+|||||++. ...+++++. |.+-|++++|.| .|.++|+|||-|+.+|
T Consensus 361 P~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~--~~~CL~~F~-HndfVTcVaFnP-vDDryFiSGSLD~KvR 435 (712)
T KOG0283|consen 361 PFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPG--RKECLKVFS-HNDFVTCVAFNP-VDDRYFISGSLDGKVR 435 (712)
T ss_pred chhhhhccchhheecccccCC-eeEeccccccEEeecCC--CcceeeEEe-cCCeeEEEEecc-cCCCcEeecccccceE
Confidence 344567999999999999765 89999999999999984 446787775 999999999975 4689999999999999
Q ss_pred EeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEee------ccCCCCeeEEE
Q 036510 83 IWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRID------QAHPVGVTSVS 156 (288)
Q Consensus 83 iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~------~~~~~~v~~i~ 156 (288)
||++.+.. +..+..-.+-|++++|.|+ |..++.|+.+|.+++|+++...-....++. ..|. .|+.+.
T Consensus 436 iWsI~d~~----Vv~W~Dl~~lITAvcy~Pd--Gk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q 508 (712)
T KOG0283|consen 436 LWSISDKK----VVDWNDLRDLITAVCYSPD--GKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQ 508 (712)
T ss_pred EeecCcCe----eEeehhhhhhheeEEeccC--CceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc-eeeeeE
Confidence 99986532 3333334478999999998 778899999999999998743211111111 1233 699999
Q ss_pred eCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCc--ceEEEEecCCCCCCCcEEEEEeCC
Q 036510 157 WAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTD--WVRDVAWAPNLGLPKSTIASASED 234 (288)
Q Consensus 157 ~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~--~V~~v~~sp~~~~~~~~l~s~s~D 234 (288)
|.|..+ ..++..+.|..|+|+|.++. +++..++|+.. .-...+|+.| +++|++|++|
T Consensus 509 ~~p~~~-------------~~vLVTSnDSrIRI~d~~~~----~lv~KfKG~~n~~SQ~~Asfs~D----gk~IVs~seD 567 (712)
T KOG0283|consen 509 FFPGDP-------------DEVLVTSNDSRIRIYDGRDK----DLVHKFKGFRNTSSQISASFSSD----GKHIVSASED 567 (712)
T ss_pred ecCCCC-------------CeEEEecCCCceEEEeccch----hhhhhhcccccCCcceeeeEccC----CCEEEEeecC
Confidence 998764 34555578999999999653 34555665543 2244588887 4799999999
Q ss_pred CcEEEEEee
Q 036510 235 GKVIIWTVA 243 (288)
Q Consensus 235 ~~i~iw~~~ 243 (288)
..|.||+..
T Consensus 568 s~VYiW~~~ 576 (712)
T KOG0283|consen 568 SWVYIWKND 576 (712)
T ss_pred ceEEEEeCC
Confidence 999999973
No 107
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=7.8e-23 Score=165.62 Aligned_cols=238 Identities=18% Similarity=0.275 Sum_probs=176.4
Q ss_pred cccceEEEEEcCCCCEEEEeeC--CCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecC
Q 036510 10 HEDTVHDVAMDYYGKRLATASS--DYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEG 87 (288)
Q Consensus 10 h~~~v~~~~~s~~g~~l~s~~~--d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~ 87 (288)
++-+|..++|-...+.+..++. |.+||+.++... +.++.+.||+..|+.|+-+|- ++.|+|+|.|++|++||++
T Consensus 55 kkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dN--kylRYF~GH~~~V~sL~~sP~--~d~FlS~S~D~tvrLWDlR 130 (311)
T KOG1446|consen 55 KKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDN--KYLRYFPGHKKRVNSLSVSPK--DDTFLSSSLDKTVRLWDLR 130 (311)
T ss_pred ccccccEEEEecCCceEEEccCCCCCceEEEEeecC--ceEEEcCCCCceEEEEEecCC--CCeEEecccCCeEEeeEec
Confidence 3457778888776767777776 999999998644 779999999999999998764 6899999999999999999
Q ss_pred CCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCC--CCeeeEEeeccCCCCeeEEEeCCCCCCCc
Q 036510 88 NSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARAD--GGWDTSRIDQAHPVGVTSVSWAPSTAPGA 165 (288)
Q Consensus 88 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~--~~~~~~~~~~~~~~~v~~i~~~p~~~~~~ 165 (288)
..++... +. ...-..++|.|. |.++|++...+.|++||+|.- +..........-....+.+.|+|++
T Consensus 131 ~~~cqg~---l~--~~~~pi~AfDp~--GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dG---- 199 (311)
T KOG1446|consen 131 VKKCQGL---LN--LSGRPIAAFDPE--GLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDG---- 199 (311)
T ss_pred CCCCceE---Ee--cCCCcceeECCC--CcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCC----
Confidence 7664322 22 223355677887 788888877779999999964 2333333333445678889999988
Q ss_pred eecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcce---EEEEecCCCCCCCcEEEEEeCCCcEEEEEe
Q 036510 166 LVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWV---RDVAWAPNLGLPKSTIASASEDGKVIIWTV 242 (288)
Q Consensus 166 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V---~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~ 242 (288)
+.++.+...+.+.+.|...|. ...++.++...- -+..|.||+ +.|++|+.||+|.+|++
T Consensus 200 ----------K~iLlsT~~s~~~~lDAf~G~----~~~tfs~~~~~~~~~~~a~ftPds----~Fvl~gs~dg~i~vw~~ 261 (311)
T KOG1446|consen 200 ----------KSILLSTNASFIYLLDAFDGT----VKSTFSGYPNAGNLPLSATFTPDS----KFVLSGSDDGTIHVWNL 261 (311)
T ss_pred ----------CEEEEEeCCCcEEEEEccCCc----EeeeEeeccCCCCcceeEEECCCC----cEEEEecCCCcEEEEEc
Confidence 667777778889999998884 334444444321 466999985 78999999999999999
Q ss_pred ecCCCcccceEeec-cccCeEEEEeecCCCEEEEEeCCCcEEEe
Q 036510 243 AREGDQWEGKVLHD-FKTPVYRVSWSLTGNILAVADGNNNVTLW 285 (288)
Q Consensus 243 ~~~~~~~~~~~~~~-~~~~i~~~~~spdg~~l~s~~~d~~v~~w 285 (288)
+.... .....+ ...++.++.|+|.-.++++++ ..+-+|
T Consensus 262 ~tg~~---v~~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~fw 300 (311)
T KOG1446|consen 262 ETGKK---VAVLRGPNGGPVSCVRFNPRYAMFVSAS--SNLVFW 300 (311)
T ss_pred CCCcE---eeEecCCCCCCccccccCCceeeeeecC--ceEEEE
Confidence 65421 122223 356889999999999998776 566666
No 108
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.6e-23 Score=183.55 Aligned_cols=222 Identities=27% Similarity=0.440 Sum_probs=176.7
Q ss_pred EEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeec-CCCc
Q 036510 26 LATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFED-HKSS 104 (288)
Q Consensus 26 l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~-h~~~ 104 (288)
+++.+.+..|.+|+........+..+ +...|+++.|+++ |.+|+.|-.+|.|.|||....+ ....+.+ |...
T Consensus 190 ~laValg~~vylW~~~s~~v~~l~~~--~~~~vtSv~ws~~--G~~LavG~~~g~v~iwD~~~~k---~~~~~~~~h~~r 262 (484)
T KOG0305|consen 190 VLAVALGQSVYLWSASSGSVTELCSF--GEELVTSVKWSPD--GSHLAVGTSDGTVQIWDVKEQK---KTRTLRGSHASR 262 (484)
T ss_pred eEEEEecceEEEEecCCCceEEeEec--CCCceEEEEECCC--CCEEEEeecCCeEEEEehhhcc---ccccccCCcCce
Confidence 44455567899998754433334443 3788999999864 9999999999999999987654 3445666 9999
Q ss_pred eeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecC
Q 036510 105 VNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCD 184 (288)
Q Consensus 105 v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d 184 (288)
|.+++|+. ..+.+|+.|+.|.++|+|..+.... .+++|...|+-++|++++ .+|++|+-|
T Consensus 263 vg~laW~~----~~lssGsr~~~I~~~dvR~~~~~~~--~~~~H~qeVCgLkws~d~--------------~~lASGgnD 322 (484)
T KOG0305|consen 263 VGSLAWNS----SVLSSGSRDGKILNHDVRISQHVVS--TLQGHRQEVCGLKWSPDG--------------NQLASGGND 322 (484)
T ss_pred eEEEeccC----ceEEEecCCCcEEEEEEecchhhhh--hhhcccceeeeeEECCCC--------------CeeccCCCc
Confidence 99999994 3689999999999999997654432 467899999999999998 889999999
Q ss_pred CcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeC--CCcEEEEEeecCCCcccceEeec--cccC
Q 036510 185 NTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASE--DGKVIIWTVAREGDQWEGKVLHD--FKTP 260 (288)
Q Consensus 185 ~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~--D~~i~iw~~~~~~~~~~~~~~~~--~~~~ 260 (288)
+.+.|||.... +....+..|...|.+++|+|-. ..+||+|+. |+.|++||.... ..+.. -++.
T Consensus 323 N~~~Iwd~~~~----~p~~~~~~H~aAVKA~awcP~q---~~lLAsGGGs~D~~i~fwn~~~g------~~i~~vdtgsQ 389 (484)
T KOG0305|consen 323 NVVFIWDGLSP----EPKFTFTEHTAAVKALAWCPWQ---SGLLATGGGSADRCIKFWNTNTG------ARIDSVDTGSQ 389 (484)
T ss_pred cceEeccCCCc----cccEEEeccceeeeEeeeCCCc---cCceEEcCCCcccEEEEEEcCCC------cEecccccCCc
Confidence 99999998543 3455678899999999999974 468999874 999999998743 22222 2468
Q ss_pred eEEEEeecCCCEEEEEeC--CCcEEEeEc
Q 036510 261 VYRVSWSLTGNILAVADG--NNNVTLWEE 287 (288)
Q Consensus 261 i~~~~~spdg~~l~s~~~--d~~v~~w~~ 287 (288)
|.++.|++..+.|+++-. ++.|.||+.
T Consensus 390 VcsL~Wsk~~kEi~sthG~s~n~i~lw~~ 418 (484)
T KOG0305|consen 390 VCSLIWSKKYKELLSTHGYSENQITLWKY 418 (484)
T ss_pred eeeEEEcCCCCEEEEecCCCCCcEEEEec
Confidence 999999999998888753 678999984
No 109
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=7e-24 Score=177.00 Aligned_cols=208 Identities=22% Similarity=0.351 Sum_probs=169.3
Q ss_pred eEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCc
Q 036510 48 LAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGN 127 (288)
Q Consensus 48 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~ 127 (288)
.+.+..|++.||.+.||++ |++|||+|.|.+..||.+.........+++.+|.++|.-+.|+|| .++|++++.|..
T Consensus 217 ~qil~~htdEVWfl~FS~n--GkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPD--dryLlaCg~~e~ 292 (519)
T KOG0293|consen 217 WQILQDHTDEVWFLQFSHN--GKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPD--DRYLLACGFDEV 292 (519)
T ss_pred hhhHhhCCCcEEEEEEcCC--CeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCC--CCeEEecCchHh
Confidence 4567899999999999975 999999999999999998665556677889999999999999999 567888888889
Q ss_pred EEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeecccc
Q 036510 128 ISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQM 207 (288)
Q Consensus 128 i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 207 (288)
+.+||..++.... ...++|...+.++.|.|++ ..+++|+.|++|.+||+.... ....++
T Consensus 293 ~~lwDv~tgd~~~--~y~~~~~~S~~sc~W~pDg--------------~~~V~Gs~dr~i~~wdlDgn~-----~~~W~g 351 (519)
T KOG0293|consen 293 LSLWDVDTGDLRH--LYPSGLGFSVSSCAWCPDG--------------FRFVTGSPDRTIIMWDLDGNI-----LGNWEG 351 (519)
T ss_pred eeeccCCcchhhh--hcccCcCCCcceeEEccCC--------------ceeEecCCCCcEEEecCCcch-----hhcccc
Confidence 9999998765322 2223466889999999998 669999999999999997642 333443
Q ss_pred CC-cceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510 208 HT-DWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE 286 (288)
Q Consensus 208 h~-~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~ 286 (288)
.. ..|.+++..+|+ +++++...|..|++++.....+. .++ ....+|++.+.|.||+++++.=.+..|++||
T Consensus 352 vr~~~v~dlait~Dg----k~vl~v~~d~~i~l~~~e~~~dr---~li-se~~~its~~iS~d~k~~LvnL~~qei~LWD 423 (519)
T KOG0293|consen 352 VRDPKVHDLAITYDG----KYVLLVTVDKKIRLYNREARVDR---GLI-SEEQPITSFSISKDGKLALVNLQDQEIHLWD 423 (519)
T ss_pred cccceeEEEEEcCCC----cEEEEEecccceeeechhhhhhh---ccc-cccCceeEEEEcCCCcEEEEEcccCeeEEee
Confidence 33 358999999984 78888899999999998754221 122 2346899999999999999999999999999
Q ss_pred cC
Q 036510 287 EA 288 (288)
Q Consensus 287 ~~ 288 (288)
.+
T Consensus 424 l~ 425 (519)
T KOG0293|consen 424 LE 425 (519)
T ss_pred cc
Confidence 64
No 110
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.92 E-value=3.7e-23 Score=164.00 Aligned_cols=207 Identities=16% Similarity=0.268 Sum_probs=163.7
Q ss_pred EEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEE
Q 036510 50 KLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNIS 129 (288)
Q Consensus 50 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~ 129 (288)
-+.||..+++.+.|+++ |.+|.||+.|.++.+|-..++. ...++.+|.+.|+|++..-+ ...+++|+.|++++
T Consensus 5 ~l~GHERplTqiKyN~e--GDLlFscaKD~~~~vw~s~nGe---rlGty~GHtGavW~~Did~~--s~~liTGSAD~t~k 77 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNRE--GDLLFSCAKDSTPTVWYSLNGE---RLGTYDGHTGAVWCCDIDWD--SKHLITGSADQTAK 77 (327)
T ss_pred ccccCccccceEEecCC--CcEEEEecCCCCceEEEecCCc---eeeeecCCCceEEEEEecCC--cceeeeccccceeE
Confidence 36799999999999875 8999999999999999776665 56788999999999997655 67899999999999
Q ss_pred EEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEe-----ecCCcEEEEEEeCCc---eeeee
Q 036510 130 VFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSG-----GCDNTVKVWKLYNGI---WKMDC 201 (288)
Q Consensus 130 i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~-----~~d~~i~iwd~~~~~---~~~~~ 201 (288)
+||..++.+..... .+..|..+.|++.+. +++.. +.-+.|.++|++... ...++
T Consensus 78 LWDv~tGk~la~~k----~~~~Vk~~~F~~~gn--------------~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep 139 (327)
T KOG0643|consen 78 LWDVETGKQLATWK----TNSPVKRVDFSFGGN--------------LILASTDKQMGYTCFVSVFDIRDDSSDIDSEEP 139 (327)
T ss_pred EEEcCCCcEEEEee----cCCeeEEEeeccCCc--------------EEEEEehhhcCcceEEEEEEccCChhhhcccCc
Confidence 99999886544432 467799999999873 32222 223468899997432 11133
Q ss_pred eeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCc
Q 036510 202 FPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNN 281 (288)
Q Consensus 202 ~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~ 281 (288)
+..+..+.+.+..+-|.|- +.+|++|..||.|.+||++...+. ......|...|+.++|+||..+|+++|.|.+
T Consensus 140 ~~kI~t~~skit~a~Wg~l----~~~ii~Ghe~G~is~~da~~g~~~--v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dtt 213 (327)
T KOG0643|consen 140 YLKIPTPDSKITSALWGPL----GETIIAGHEDGSISIYDARTGKEL--VDSDEEHSSKINDLQFSRDRTYFITGSKDTT 213 (327)
T ss_pred eEEecCCccceeeeeeccc----CCEEEEecCCCcEEEEEcccCcee--eechhhhccccccccccCCcceEEecccCcc
Confidence 4455667788999999996 478999999999999999864321 2223456678999999999999999999999
Q ss_pred EEEeEc
Q 036510 282 VTLWEE 287 (288)
Q Consensus 282 v~~w~~ 287 (288)
-++||+
T Consensus 214 akl~D~ 219 (327)
T KOG0643|consen 214 AKLVDV 219 (327)
T ss_pred ceeeec
Confidence 999995
No 111
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.92 E-value=6.7e-24 Score=166.83 Aligned_cols=201 Identities=23% Similarity=0.354 Sum_probs=159.5
Q ss_pred ccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCC
Q 036510 9 GHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGN 88 (288)
Q Consensus 9 ~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~ 88 (288)
.|.--|..++|+.|.++|++|+.++.+|++|++.+. .+...+.+|.+.|..+-|-+. .+.++|++.|++||+||.++
T Consensus 98 ~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~-App~E~~ghtg~Ir~v~wc~e--D~~iLSSadd~tVRLWD~rT 174 (334)
T KOG0278|consen 98 EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPK-APPKEISGHTGGIRTVLWCHE--DKCILSSADDKTVRLWDHRT 174 (334)
T ss_pred hhhheeeeEEecccchhhhccchHHHhhhhhccCCC-CCchhhcCCCCcceeEEEecc--CceEEeeccCCceEEEEecc
Confidence 577778899999999999999999999999997544 345667899999999999874 57888889999999999998
Q ss_pred CCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceec
Q 036510 89 SNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVG 168 (288)
Q Consensus 89 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~ 168 (288)
+. .++++. ...+|+++.++++ +.++. -...+.|.+||...-+.+ +.. ..+..|.+.+..|+.
T Consensus 175 gt---~v~sL~-~~s~VtSlEvs~d--G~ilT-ia~gssV~Fwdaksf~~l---Ks~-k~P~nV~SASL~P~k------- 236 (334)
T KOG0278|consen 175 GT---EVQSLE-FNSPVTSLEVSQD--GRILT-IAYGSSVKFWDAKSFGLL---KSY-KMPCNVESASLHPKK------- 236 (334)
T ss_pred Cc---EEEEEe-cCCCCcceeeccC--CCEEE-EecCceeEEeccccccce---eec-cCccccccccccCCC-------
Confidence 76 344443 3568999999998 55444 345678999998754322 211 234567888888876
Q ss_pred ccccCCCceeEEeecCCcEEEEEEeCCceeeeeeec-cccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecC
Q 036510 169 SGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPA-LQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVARE 245 (288)
Q Consensus 169 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~ 245 (288)
..++.|+.|..+.-||..++. .+-. .++|.++|.||.|+|++ ..-|+||.||+||+|.....
T Consensus 237 -------~~fVaGged~~~~kfDy~Tge----Ei~~~nkgh~gpVhcVrFSPdG----E~yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 237 -------EFFVAGGEDFKVYKFDYNTGE----EIGSYNKGHFGPVHCVRFSPDG----ELYASGSEDGTIRLWQTTPG 299 (334)
T ss_pred -------ceEEecCcceEEEEEeccCCc----eeeecccCCCCceEEEEECCCC----ceeeccCCCceEEEEEecCC
Confidence 679999999999999998874 2223 48999999999999985 57899999999999987643
No 112
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=1.2e-23 Score=166.20 Aligned_cols=207 Identities=24% Similarity=0.399 Sum_probs=155.1
Q ss_pred EEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcE
Q 036510 49 AKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNI 128 (288)
Q Consensus 49 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i 128 (288)
+.+.+|.+.+..++|+.+ |..|++++.|+++++|++.... ........+|.+.|-.+.|+|.. ..++++++.|++|
T Consensus 14 r~~~~~~~~v~Sv~wn~~--g~~lasgs~dktv~v~n~e~~r-~~~~~~~~gh~~svdql~w~~~~-~d~~atas~dk~i 89 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCD--GTKLASGSFDKTVSVWNLERDR-FRKELVYRGHTDSVDQLCWDPKH-PDLFATASGDKTI 89 (313)
T ss_pred HHhhhhhhcceEEEEccc--CceeeecccCCceEEEEecchh-hhhhhcccCCCcchhhheeCCCC-CcceEEecCCceE
Confidence 346789999999999864 9999999999999999986432 11223456799999999999875 4578899999999
Q ss_pred EEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCc------------
Q 036510 129 SVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGI------------ 196 (288)
Q Consensus 129 ~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~------------ 196 (288)
++||+|......... .+..=.-+.|+|++ .+++.++.|..|.+.|.++-.
T Consensus 90 r~wd~r~~k~~~~i~----~~~eni~i~wsp~g--------------~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~n 151 (313)
T KOG1407|consen 90 RIWDIRSGKCTARIE----TKGENINITWSPDG--------------EYIAVGNKDDRITFIDARTYKIVNEEQFKFEVN 151 (313)
T ss_pred EEEEeccCcEEEEee----ccCcceEEEEcCCC--------------CEEEEecCcccEEEEEecccceeehhcccceee
Confidence 999999876543322 22333467899987 445555555555555543210
Q ss_pred -------------------------eeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccc
Q 036510 197 -------------------------WKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEG 251 (288)
Q Consensus 197 -------------------------~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~ 251 (288)
..++.+++++.|...+.||.|+|+ +++||+||.|..+-+||++.. .-.
T Consensus 152 e~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~----GryfA~GsADAlvSLWD~~EL---iC~ 224 (313)
T KOG1407|consen 152 EISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPD----GRYFATGSADALVSLWDVDEL---ICE 224 (313)
T ss_pred eeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCC----CceEeeccccceeeccChhHh---hhh
Confidence 023556678899999999999998 479999999999999999742 122
Q ss_pred eEeeccccCeEEEEeecCCCEEEEEeCCCcEEE
Q 036510 252 KVLHDFKTPVYRVSWSLTGNILAVADGNNNVTL 284 (288)
Q Consensus 252 ~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~ 284 (288)
+.+..+.=||..+.||.||++||+||+|-.|-|
T Consensus 225 R~isRldwpVRTlSFS~dg~~lASaSEDh~IDI 257 (313)
T KOG1407|consen 225 RCISRLDWPVRTLSFSHDGRMLASASEDHFIDI 257 (313)
T ss_pred eeeccccCceEEEEeccCcceeeccCccceEEe
Confidence 444555668999999999999999999987743
No 113
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=8.9e-23 Score=164.73 Aligned_cols=222 Identities=22% Similarity=0.409 Sum_probs=171.5
Q ss_pred ccccceEEEEEcC--CCCEEEEeeCCCcEEEEEeCC-------CCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCC
Q 036510 9 GHEDTVHDVAMDY--YGKRLATASSDYSIKIIGVGN-------NTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDG 79 (288)
Q Consensus 9 ~h~~~v~~~~~s~--~g~~l~s~~~d~~i~lwd~~~-------~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~ 79 (288)
.|++.|..|.|-+ .|+.+|++|.|+++.||+... .+.....++......|++++|.|...|..+++++.||
T Consensus 57 ah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG 136 (361)
T KOG2445|consen 57 AHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADG 136 (361)
T ss_pred ecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCc
Confidence 6899999999854 599999999999999997621 1223456778888999999999877799999999999
Q ss_pred cEEEeecCCC---CceEEeEEee-------cCCCceeEEEeccCCCC-eEEEEEeCC-----CcEEEEeecCCC-CeeeE
Q 036510 80 TVIIWKEGNS---NEWIKDHVFE-------DHKSSVNSIDWAPHELG-LCLACGSSD-----GNISVFTARADG-GWDTS 142 (288)
Q Consensus 80 ~v~iwd~~~~---~~~~~~~~~~-------~h~~~v~~l~~~p~~~~-~~l~sg~~d-----~~i~i~d~~~~~-~~~~~ 142 (288)
.+|||+.-+. ..|.+.+.+. .+..+..|+.|+|..-. .++|.|+.+ +.+.||...++. .|...
T Consensus 137 ~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kv 216 (361)
T KOG2445|consen 137 ILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKV 216 (361)
T ss_pred EEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeee
Confidence 9999986432 3344444443 46778999999986432 356666555 488899876654 66665
Q ss_pred EeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCC----------------ceeeeeeeccc
Q 036510 143 RIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNG----------------IWKMDCFPALQ 206 (288)
Q Consensus 143 ~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~----------------~~~~~~~~~~~ 206 (288)
..+.+|+.+|+.|+|.|..... -.+|++++.|| |+||++... ....+.+..+.
T Consensus 217 a~L~d~~dpI~di~wAPn~Gr~----------y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~ 285 (361)
T KOG2445|consen 217 AELPDHTDPIRDISWAPNIGRS----------YHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELD 285 (361)
T ss_pred hhcCCCCCcceeeeeccccCCc----------eeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeecc
Confidence 5667899999999999986321 16799999999 999999731 11234566788
Q ss_pred cCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecC
Q 036510 207 MHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVARE 245 (288)
Q Consensus 207 ~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~ 245 (288)
+|...|+.+.|+-. +..|+|.++||.||+|.....
T Consensus 286 ~H~~~VWrv~wNmt----GtiLsStGdDG~VRLWkany~ 320 (361)
T KOG2445|consen 286 DHNGEVWRVRWNMT----GTILSSTGDDGCVRLWKANYN 320 (361)
T ss_pred CCCCceEEEEEeee----eeEEeecCCCceeeehhhhhh
Confidence 99999999999885 588999999999999987654
No 114
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2.3e-22 Score=182.22 Aligned_cols=246 Identities=18% Similarity=0.275 Sum_probs=185.2
Q ss_pred ccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCC
Q 036510 9 GHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGN 88 (288)
Q Consensus 9 ~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~ 88 (288)
+|+.+-+.|++.|+|..|.+++.|+.|++|+..... +.-.++.-|...|.+++-. +++|++|+.+++|.++....
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~-e~P~ti~~~g~~v~~ia~~----s~~f~~~s~~~tv~~y~fps 85 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDE-EEPETIDISGELVSSIACY----SNHFLTGSEQNTVLRYKFPS 85 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcc-cCCchhhccCceeEEEeec----ccceEEeeccceEEEeeCCC
Confidence 899999999999999999999999999999863321 1112233377788888742 67999999999999998765
Q ss_pred CCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceec
Q 036510 89 SNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVG 168 (288)
Q Consensus 89 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~ 168 (288)
+..- ..+....-++.+++|+.+ +..+|.|+.|-.|++-+.....+ .....+|..+|.+++|+|.+
T Consensus 86 ~~~~---~iL~Rftlp~r~~~v~g~--g~~iaagsdD~~vK~~~~~D~s~---~~~lrgh~apVl~l~~~p~~------- 150 (933)
T KOG1274|consen 86 GEED---TILARFTLPIRDLAVSGS--GKMIAAGSDDTAVKLLNLDDSSQ---EKVLRGHDAPVLQLSYDPKG------- 150 (933)
T ss_pred CCcc---ceeeeeeccceEEEEecC--CcEEEeecCceeEEEEeccccch---heeecccCCceeeeeEcCCC-------
Confidence 5421 223445678999999876 67899999999999988765433 34567899999999999997
Q ss_pred ccccCCCceeEEeecCCcEEEEEEeCCceeee---eeeccccC-CcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeec
Q 036510 169 SGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMD---CFPALQMH-TDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAR 244 (288)
Q Consensus 169 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~---~~~~~~~h-~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~ 244 (288)
.+|++.+.||.|++||+.++..... .......- ...+.-++|+|++ ..|+..+.|+.|++|+...
T Consensus 151 -------~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~----g~la~~~~d~~Vkvy~r~~ 219 (933)
T KOG1274|consen 151 -------NFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKG----GTLAVPPVDNTVKVYSRKG 219 (933)
T ss_pred -------CEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCC----CeEEeeccCCeEEEEccCC
Confidence 8999999999999999987631100 01111111 3346778999985 4799999999999998753
Q ss_pred CCCcccceEe-eccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510 245 EGDQWEGKVL-HDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 245 ~~~~~~~~~~-~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~ 287 (288)
-.. ...+. ..+...+..++|+|.|+|||+++.||.|.|||.
T Consensus 220 we~--~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv 261 (933)
T KOG1274|consen 220 WEL--QFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNV 261 (933)
T ss_pred cee--heeecccccccceEEEEEcCCCcEEeeeccCCcEEEEec
Confidence 211 11221 223445889999999999999999999999995
No 115
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.91 E-value=1e-22 Score=179.46 Aligned_cols=270 Identities=25% Similarity=0.424 Sum_probs=196.6
Q ss_pred cccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCce-----eeEEEeccccCeEEEEecCCCCCCEEEEeeCCCc
Q 036510 6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQ-----HLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGT 80 (288)
Q Consensus 6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~-----~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~ 80 (288)
++-||++.|+++.|.|.+..|+|+|.|+++.+|.-+..++- ++....|..+..++.-|+++ ++.+++-+.-|.
T Consensus 262 ll~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n--~~~ii~~g~~Gg 339 (764)
T KOG1063|consen 262 LLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPN--SNVIIAHGRTGG 339 (764)
T ss_pred hhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCC--CCEEEEecccCc
Confidence 34599999999999999989999999999999986544332 23334455677899999865 789999999999
Q ss_pred EEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeec-CCCCeeeEEeeccCCCCeeEEEeCC
Q 036510 81 VIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTAR-ADGGWDTSRIDQAHPVGVTSVSWAP 159 (288)
Q Consensus 81 v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~-~~~~~~~~~~~~~~~~~v~~i~~~p 159 (288)
.++|-..+...|.....+.+|.+.|..++|+|. +.++++.+.|.+-|+|.-- +...|+.....+.|.-.++|+++-+
T Consensus 340 ~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~ps--GeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn 417 (764)
T KOG1063|consen 340 FHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPS--GEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVN 417 (764)
T ss_pred EEEEeccCccceeeccccccccccceeeeecCC--CCEEEEeccccceeeecccccccceeeecccccccccceeeehcc
Confidence 999985555556555667899999999999997 6789999999999998543 2233555555566666666666544
Q ss_pred CCC------C---------------------------------Cce---ec-----------------------------
Q 036510 160 STA------P---------------------------------GAL---VG----------------------------- 168 (288)
Q Consensus 160 ~~~------~---------------------------------~~~---~~----------------------------- 168 (288)
... . ++. ++
T Consensus 418 ~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p 497 (764)
T KOG1063|consen 418 EDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAP 497 (764)
T ss_pred CCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCc
Confidence 110 0 000 00
Q ss_pred ---------------------------------ccccCCCceeEEeecCC-----cEEEEEEeCCceeeeeeeccccCCc
Q 036510 169 ---------------------------------SGFLDPVQKLCSGGCDN-----TVKVWKLYNGIWKMDCFPALQMHTD 210 (288)
Q Consensus 169 ---------------------------------~~~~~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~h~~ 210 (288)
....+++++++|+.... -|+||+..+ + ..++.+.+|+-
T Consensus 498 ~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~--W--~~~~~L~~HsL 573 (764)
T KOG1063|consen 498 CELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTAN--W--LQVQELEGHSL 573 (764)
T ss_pred hhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccc--h--hhhheecccce
Confidence 00012345666654322 378898654 2 23457889999
Q ss_pred ceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCc-ccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510 211 WVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQ-WEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 211 ~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~-~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~ 287 (288)
.|+-+.|||| +++|+++|.|+++.+|........ ..-...+.|..-|.++.|+||+.+|+++|.|++|+||.+
T Consensus 574 TVT~l~FSpd----g~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~ 647 (764)
T KOG1063|consen 574 TVTRLAFSPD----GRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEE 647 (764)
T ss_pred EEEEEEECCC----CcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEec
Confidence 9999999998 489999999999999998643211 111224567777899999999999999999999999984
No 116
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.3e-22 Score=164.63 Aligned_cols=250 Identities=19% Similarity=0.250 Sum_probs=169.7
Q ss_pred cccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCC---ceee-------------------------------EEE
Q 036510 6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNT---SQHL-------------------------------AKL 51 (288)
Q Consensus 6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~---~~~~-------------------------------~~~ 51 (288)
.+.||.+.|++++|+.||++|++++.|++|+||++..-. .+++ +.+
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vy 160 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVY 160 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEE
Confidence 355899999999999999999999999999999984211 0000 000
Q ss_pred e-----------------------ccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEE
Q 036510 52 S-----------------------GHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSI 108 (288)
Q Consensus 52 ~-----------------------~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l 108 (288)
. -|+-.+-++... ..+.+++|+|.|..|.+|+++. . ....+......-+-.
T Consensus 161 k~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA--~~~k~imsas~dt~i~lw~lkG-q---~L~~idtnq~~n~~a 234 (420)
T KOG2096|consen 161 KLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIA--GNAKYIMSASLDTKICLWDLKG-Q---LLQSIDTNQSSNYDA 234 (420)
T ss_pred EeeecccCCCCcccccccccccchhcccceEEEeec--CCceEEEEecCCCcEEEEecCC-c---eeeeeccccccccce
Confidence 0 122223333322 1367999999999999999873 2 222333333344567
Q ss_pred EeccCCCCeEEEEEeCCCcEEEEeecC--CCCeee---EEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeec
Q 036510 109 DWAPHELGLCLACGSSDGNISVFTARA--DGGWDT---SRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGC 183 (288)
Q Consensus 109 ~~~p~~~~~~l~sg~~d~~i~i~d~~~--~~~~~~---~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~ 183 (288)
+++|+ |+.+++++.---+.+|.+-. ++.++. ...+++|...|..++|+|+. ..++|.|.
T Consensus 235 avSP~--GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S--------------~r~vtvSk 298 (420)
T KOG2096|consen 235 AVSPD--GRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSS--------------TRAVTVSK 298 (420)
T ss_pred eeCCC--CcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCc--------------ceeEEEec
Confidence 88998 78888888888899998642 233322 23467999999999999987 78999999
Q ss_pred CCcEEEEEEeCC----ce--eeeee--eccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEee
Q 036510 184 DNTVKVWKLYNG----IW--KMDCF--PALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLH 255 (288)
Q Consensus 184 d~~i~iwd~~~~----~~--~~~~~--~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~ 255 (288)
||+++|||+.-. +. .++.. ........++ .+..+|++ .+++.+....++++..+..+...+.+ .
T Consensus 299 DG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~-RL~lsP~g-----~~lA~s~gs~l~~~~se~g~~~~~~e--~ 370 (420)
T KOG2096|consen 299 DGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPV-RLELSPSG-----DSLAVSFGSDLKVFASEDGKDYPELE--D 370 (420)
T ss_pred CCcEEEeeccceEecCCCchHhhcCCcchhhcCCCce-EEEeCCCC-----cEEEeecCCceEEEEcccCccchhHH--H
Confidence 999999997421 10 01110 0112233344 67999974 35667777789999887643222222 2
Q ss_pred ccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510 256 DFKTPVYRVSWSLTGNILAVADGNNNVTLWE 286 (288)
Q Consensus 256 ~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~ 286 (288)
-|+..|.+++|+|||++++++ .|+-++|..
T Consensus 371 ~h~~~Is~is~~~~g~~~atc-Gdr~vrv~~ 400 (420)
T KOG2096|consen 371 IHSTTISSISYSSDGKYIATC-GDRYVRVIR 400 (420)
T ss_pred hhcCceeeEEecCCCcEEeee-cceeeeeec
Confidence 356789999999999999988 578888764
No 117
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.91 E-value=1.1e-23 Score=179.81 Aligned_cols=237 Identities=17% Similarity=0.277 Sum_probs=192.3
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCC
Q 036510 11 EDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSN 90 (288)
Q Consensus 11 ~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~ 90 (288)
+.-+.+.++.|||+.|+.|+...++.|||+..++......+..-....++++.+++ .++..+|..||.|.|||+.+..
T Consensus 465 dnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spD--akvcFsccsdGnI~vwDLhnq~ 542 (705)
T KOG0639|consen 465 DNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPD--AKVCFSCCSDGNIAVWDLHNQT 542 (705)
T ss_pred ccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCc--cceeeeeccCCcEEEEEcccce
Confidence 45677888999999999999999999999987765445555544556788888865 7889999999999999998865
Q ss_pred ceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceeccc
Q 036510 91 EWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSG 170 (288)
Q Consensus 91 ~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~ 170 (288)
.++.+.+|.+.+.||+++++ +..|=+|+.|+++|-||+|++.+.+. ..+..+|.++..+|++
T Consensus 543 ---~VrqfqGhtDGascIdis~d--GtklWTGGlDntvRcWDlregrqlqq----hdF~SQIfSLg~cP~~--------- 604 (705)
T KOG0639|consen 543 ---LVRQFQGHTDGASCIDISKD--GTKLWTGGLDNTVRCWDLREGRQLQQ----HDFSSQIFSLGYCPTG--------- 604 (705)
T ss_pred ---eeecccCCCCCceeEEecCC--CceeecCCCccceeehhhhhhhhhhh----hhhhhhheecccCCCc---------
Confidence 67889999999999999998 56689999999999999998754322 1245779999999987
Q ss_pred ccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCccc
Q 036510 171 FLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWE 250 (288)
Q Consensus 171 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~ 250 (288)
.-|+.|.+.+.+-+.-.... ..+.+..|.+-|.++.|++- ++.+|+.+.|+.+..|..-..
T Consensus 605 -----dWlavGMens~vevlh~skp-----~kyqlhlheScVLSlKFa~c----GkwfvStGkDnlLnawrtPyG----- 665 (705)
T KOG0639|consen 605 -----DWLAVGMENSNVEVLHTSKP-----EKYQLHLHESCVLSLKFAYC----GKWFVSTGKDNLLNAWRTPYG----- 665 (705)
T ss_pred -----cceeeecccCcEEEEecCCc-----cceeecccccEEEEEEeccc----CceeeecCchhhhhhccCccc-----
Confidence 67889999988877766543 23456678889999999985 578999999999999975322
Q ss_pred ceEeec--cccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510 251 GKVLHD--FKTPVYRVSWSLTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 251 ~~~~~~--~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~ 287 (288)
..+++ -.++|.++..|-|.++|++||.|+...||.+
T Consensus 666 -asiFqskE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 666 -ASIFQSKESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred -cceeeccccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 22222 2368999999999999999999999999875
No 118
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=7.4e-23 Score=173.16 Aligned_cols=235 Identities=19% Similarity=0.229 Sum_probs=184.2
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCC--
Q 036510 11 EDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGN-- 88 (288)
Q Consensus 11 ~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~-- 88 (288)
.+.|.++.-+|.|.+|+.|...+.+.+|.+. ++..+..+.+|=.+|+++.|+. ++.+|+|||.||.|.+|.+.+
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWels--sG~LL~v~~aHYQ~ITcL~fs~--dgs~iiTgskDg~V~vW~l~~lv 156 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELS--SGILLNVLSAHYQSITCLKFSD--DGSHIITGSKDGAVLVWLLTDLV 156 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEec--cccHHHHHHhhccceeEEEEeC--CCcEEEecCCCccEEEEEEEeec
Confidence 4678899999999999988899999999995 4577888899999999999985 489999999999999997621
Q ss_pred ----CCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCC
Q 036510 89 ----SNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPG 164 (288)
Q Consensus 89 ----~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~ 164 (288)
.......+.+..|.-+|+.+...+.+..-++++.+.|.++++||+..+.-+.. -..+..+.++..+|..
T Consensus 157 ~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlt----i~fp~si~av~lDpae--- 229 (476)
T KOG0646|consen 157 SADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLT----ITFPSSIKAVALDPAE--- 229 (476)
T ss_pred ccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEE----EecCCcceeEEEcccc---
Confidence 11223456788999999999887765566799999999999999987632211 2357789999999976
Q ss_pred ceecccccCCCceeEEeecCCcEEEEEEeCCc------------eeeeeeeccccCCc--ceEEEEecCCCCCCCcEEEE
Q 036510 165 ALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGI------------WKMDCFPALQMHTD--WVRDVAWAPNLGLPKSTIAS 230 (288)
Q Consensus 165 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~------------~~~~~~~~~~~h~~--~V~~v~~sp~~~~~~~~l~s 230 (288)
+.+..|+.+|.|.+.++..-. ...+.+..+.||.+ .|+|++.+-| +++|++
T Consensus 230 -----------~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~D----gtlLlS 294 (476)
T KOG0646|consen 230 -----------RVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTD----GTLLLS 294 (476)
T ss_pred -----------cEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecC----ccEEEe
Confidence 778899999999988875421 12345667889999 8999999998 489999
Q ss_pred EeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEE
Q 036510 231 ASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILA 274 (288)
Q Consensus 231 ~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~ 274 (288)
|+.||+++|||+.+++- .+.+....++|+-+.+.|=-+-..
T Consensus 295 Gd~dg~VcvWdi~S~Q~---iRtl~~~kgpVtnL~i~~~~~~~~ 335 (476)
T KOG0646|consen 295 GDEDGKVCVWDIYSKQC---IRTLQTSKGPVTNLQINPLERGII 335 (476)
T ss_pred eCCCCCEEEEecchHHH---HHHHhhhccccceeEeecccccee
Confidence 99999999999987532 122233457888888876544333
No 119
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.91 E-value=6.1e-23 Score=181.61 Aligned_cols=248 Identities=13% Similarity=0.190 Sum_probs=194.6
Q ss_pred cccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCC-CCCEEEEeeCCCcEEEeecCC
Q 036510 10 HEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPK-FGSILASCSFDGTVIIWKEGN 88 (288)
Q Consensus 10 h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~~l~s~s~d~~v~iwd~~~ 88 (288)
-.-++.+++.+|+|++||+|..-|++++|++..- +....+.+|...|.++.|+.+. ...+|+|+|.|.-|.|+|...
T Consensus 458 ~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l--~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r 535 (1080)
T KOG1408|consen 458 SRFGFRALAVSPDGQHLASGDRGGNLRVYDLQEL--EYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR 535 (1080)
T ss_pred cccceEEEEECCCcceecccCccCceEEEEehhh--hhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccc
Confidence 3457889999999999999999999999999543 4566789999999999999653 456889999999999999864
Q ss_pred CCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccC---CCCeeEEEeCCCCCCCc
Q 036510 89 SNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAH---PVGVTSVSWAPSTAPGA 165 (288)
Q Consensus 89 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~---~~~v~~i~~~p~~~~~~ 165 (288)
.+.++.++.+|...|+++.|.-.+-+..+++++.|+.|++=..+....-..+ ....| ...+..++..|..
T Consensus 536 --ny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f-~r~t~t~~ktTlYDm~Vdp~~---- 608 (1080)
T KOG1408|consen 536 --NYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLF-PRHTQTLSKTTLYDMAVDPTS---- 608 (1080)
T ss_pred --ccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceec-cccccccccceEEEeeeCCCc----
Confidence 3456778899999999999987765678999999998865333321111111 01111 2346677777765
Q ss_pred eecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeecc---ccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEe
Q 036510 166 LVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPAL---QMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTV 242 (288)
Q Consensus 166 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~---~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~ 242 (288)
++++++..|+.|+|||+..+ ++.+.+ .+|.+..-.|...|. +-|||+...|+++.++|.
T Consensus 609 ----------k~v~t~cQDrnirif~i~sg----Kq~k~FKgs~~~eG~lIKv~lDPS----giY~atScsdktl~~~Df 670 (1080)
T KOG1408|consen 609 ----------KLVVTVCQDRNIRIFDIESG----KQVKSFKGSRDHEGDLIKVILDPS----GIYLATSCSDKTLCFVDF 670 (1080)
T ss_pred ----------ceEEEEecccceEEEecccc----ceeeeecccccCCCceEEEEECCC----ccEEEEeecCCceEEEEe
Confidence 78999999999999999987 344444 456566677888886 478999999999999998
Q ss_pred ecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510 243 AREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~ 287 (288)
.... ....+.+|..-|+.++|.+|=+.|+++++||.|-||++
T Consensus 671 ~sgE---cvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~l 712 (1080)
T KOG1408|consen 671 VSGE---CVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKL 712 (1080)
T ss_pred ccch---hhhhhcCcchheeeeeecccchhheeecCCceEEEEEC
Confidence 7642 12456788899999999999999999999999999984
No 120
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.91 E-value=4.1e-23 Score=165.87 Aligned_cols=212 Identities=21% Similarity=0.342 Sum_probs=162.1
Q ss_pred eccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCce-----EEeEE-------eecCCCceeEEEeccCCCCeEE
Q 036510 52 SGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEW-----IKDHV-------FEDHKSSVNSIDWAPHELGLCL 119 (288)
Q Consensus 52 ~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~-----~~~~~-------~~~h~~~v~~l~~~p~~~~~~l 119 (288)
..|.+.|+++...+ ..|++++||++||.|.+||+.+...+ +..+. -.+|+..|.++-|-|.+.+ .+
T Consensus 40 r~HgGsvNsL~id~-tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtG-mF 117 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDL-TEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTG-MF 117 (397)
T ss_pred ccCCCccceeeecc-ccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCc-ee
Confidence 35889999999864 46999999999999999999765421 11111 1258889999999998755 58
Q ss_pred EEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceee
Q 036510 120 ACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKM 199 (288)
Q Consensus 120 ~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~ 199 (288)
.+++.|.++++||..+-+....+. .+..|.+-.|+|-.. ..-++++|..|-.|++=|+..|
T Consensus 118 tssSFDhtlKVWDtnTlQ~a~~F~----me~~VYshamSp~a~-----------sHcLiA~gtr~~~VrLCDi~SG---- 178 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQEAVDFK----MEGKVYSHAMSPMAM-----------SHCLIAAGTRDVQVRLCDIASG---- 178 (397)
T ss_pred ecccccceEEEeecccceeeEEee----cCceeehhhcChhhh-----------cceEEEEecCCCcEEEEeccCC----
Confidence 899999999999987643322222 234577778887542 1135778888889999999998
Q ss_pred eeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcc------------cceEeeccccCeEEEEee
Q 036510 200 DCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQW------------EGKVLHDFKTPVYRVSWS 267 (288)
Q Consensus 200 ~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~------------~~~~~~~~~~~i~~~~~s 267 (288)
.+-+.+.||.+.|.+|.|+|.. +-.|++||.|+.||+||++....+. ..+.-.-|.+++.+++|+
T Consensus 179 s~sH~LsGHr~~vlaV~Wsp~~---e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~t 255 (397)
T KOG4283|consen 179 SFSHTLSGHRDGVLAVEWSPSS---EWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWT 255 (397)
T ss_pred cceeeeccccCceEEEEeccCc---eeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeec
Confidence 4667899999999999999975 4579999999999999998752210 000011245689999999
Q ss_pred cCCCEEEEEeCCCcEEEeEc
Q 036510 268 LTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 268 pdg~~l~s~~~d~~v~~w~~ 287 (288)
.||.++++.+.|..+++|+.
T Consensus 256 Sd~~~l~~~gtd~r~r~wn~ 275 (397)
T KOG4283|consen 256 SDARYLASCGTDDRIRVWNM 275 (397)
T ss_pred ccchhhhhccCccceEEeec
Confidence 99999999999999999985
No 121
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.91 E-value=1.5e-22 Score=186.39 Aligned_cols=221 Identities=24% Similarity=0.400 Sum_probs=166.4
Q ss_pred cccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCC----------------CCceeeEEEeccccCeEEEEecCCCCCCE
Q 036510 8 TGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGN----------------NTSQHLAKLSGHKGAVWEVAWAHPKFGSI 71 (288)
Q Consensus 8 ~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~----------------~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 71 (288)
..|.+.|.|+.|++||++||+||.|+.|.+|+... +..+.+..+.+|...|.+++|+|+ +.+
T Consensus 66 ~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~--~~~ 143 (942)
T KOG0973|consen 66 DDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPD--DSL 143 (942)
T ss_pred ccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCC--ccE
Confidence 37999999999999999999999999999998762 012467889999999999999974 899
Q ss_pred EEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeec-----
Q 036510 72 LASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQ----- 146 (288)
Q Consensus 72 l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~----- 146 (288)
|+|+|.|++|.||+..+.. ....+.+|...|..+.|.|- ++++|+-+.|++|++|.+.+ |...+...
T Consensus 144 lvS~s~DnsViiwn~~tF~---~~~vl~~H~s~VKGvs~DP~--Gky~ASqsdDrtikvwrt~d---w~i~k~It~pf~~ 215 (942)
T KOG0973|consen 144 LVSVSLDNSVIIWNAKTFE---LLKVLRGHQSLVKGVSWDPI--GKYFASQSDDRTLKVWRTSD---WGIEKSITKPFEE 215 (942)
T ss_pred EEEecccceEEEEccccce---eeeeeecccccccceEECCc--cCeeeeecCCceEEEEEccc---ceeeEeeccchhh
Confidence 9999999999999987653 66778899999999999997 88999999999999998643 22222111
Q ss_pred -cCCCCeeEEEeCCCCCCCce--------------------ecccc-----------c------CC--------Cc----
Q 036510 147 -AHPVGVTSVSWAPSTAPGAL--------------------VGSGF-----------L------DP--------VQ---- 176 (288)
Q Consensus 147 -~~~~~v~~i~~~p~~~~~~~--------------------~~~~~-----------~------~~--------~~---- 176 (288)
.......+++|+|++.-.+. +...+ + .+ .+
T Consensus 216 ~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~ 295 (942)
T KOG0973|consen 216 SPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYC 295 (942)
T ss_pred CCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceE
Confidence 11234678888888742110 00000 0 00 11
Q ss_pred eeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecC
Q 036510 177 KLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVARE 245 (288)
Q Consensus 177 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~ 245 (288)
.+++||.|++|.||.... .+++-.++.+ ....|.+++|+||+ ..|.++|.||+|.+...+..
T Consensus 296 i~AvgSqDrSlSVW~T~~-~RPl~vi~~l--f~~SI~DmsWspdG----~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 296 IAAVGSQDRSLSVWNTAL-PRPLFVIHNL--FNKSIVDMSWSPDG----FSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred EEEEecCCccEEEEecCC-CCchhhhhhh--hcCceeeeeEcCCC----CeEEEEecCCeEEEEEcchH
Confidence 577999999999999743 2222223333 34459999999985 57889999999999988753
No 122
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.91 E-value=1.9e-23 Score=169.84 Aligned_cols=242 Identities=22% Similarity=0.274 Sum_probs=194.8
Q ss_pred ccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEe-ccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecC
Q 036510 9 GHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLS-GHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEG 87 (288)
Q Consensus 9 ~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~ 87 (288)
-|+++|.+++||.|...||+|+.||.|++|.+. ++.+++.+. +|+..|+++.|+.+ +..++|+|.|.+++|..+.
T Consensus 261 Mmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~--tG~ClRrFdrAHtkGvt~l~FSrD--~SqiLS~sfD~tvRiHGlK 336 (508)
T KOG0275|consen 261 MMDDAVLCISFSRDSEMLASGSQDGKIKVWRIE--TGQCLRRFDRAHTKGVTCLSFSRD--NSQILSASFDQTVRIHGLK 336 (508)
T ss_pred ecccceEEEeecccHHHhhccCcCCcEEEEEEe--cchHHHHhhhhhccCeeEEEEccC--cchhhcccccceEEEeccc
Confidence 478999999999999999999999999999984 457888887 89999999999975 7899999999999999998
Q ss_pred CCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCcee
Q 036510 88 NSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALV 167 (288)
Q Consensus 88 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~ 167 (288)
+++ ..+.+.+|..-|+...|.++ +..+++++.||++++|+.++..+.+.++.. +....|.++-.-|..+
T Consensus 337 SGK---~LKEfrGHsSyvn~a~ft~d--G~~iisaSsDgtvkvW~~KtteC~~Tfk~~-~~d~~vnsv~~~PKnp----- 405 (508)
T KOG0275|consen 337 SGK---CLKEFRGHSSYVNEATFTDD--GHHIISASSDGTVKVWHGKTTECLSTFKPL-GTDYPVNSVILLPKNP----- 405 (508)
T ss_pred cch---hHHHhcCccccccceEEcCC--CCeEEEecCCccEEEecCcchhhhhhccCC-CCcccceeEEEcCCCC-----
Confidence 876 45668899999999999998 678999999999999999887665554432 2345677777777654
Q ss_pred cccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccc----cCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEee
Q 036510 168 GSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQ----MHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVA 243 (288)
Q Consensus 168 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~----~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~ 243 (288)
..++.+...+++.|.++... .+.++. ...+.|.+ ..||. +..+-+.+.|+.+..|...
T Consensus 406 --------eh~iVCNrsntv~imn~qGQ-----vVrsfsSGkREgGdFi~~-~lSpk----GewiYcigED~vlYCF~~~ 467 (508)
T KOG0275|consen 406 --------EHFIVCNRSNTVYIMNMQGQ-----VVRSFSSGKREGGDFINA-ILSPK----GEWIYCIGEDGVLYCFSVL 467 (508)
T ss_pred --------ceEEEEcCCCeEEEEeccce-----EEeeeccCCccCCceEEE-EecCC----CcEEEEEccCcEEEEEEee
Confidence 34666777788998887542 233332 23345655 67886 3678899999999999987
Q ss_pred cCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510 244 REGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE 286 (288)
Q Consensus 244 ~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~ 286 (288)
+.+. ...+..|+..+..++-+|..+.||+=+.|+.+++|+
T Consensus 468 sG~L---E~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 468 SGKL---ERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cCce---eeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 6532 244556677889999999999999999999999996
No 123
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.91 E-value=2.8e-22 Score=160.64 Aligned_cols=255 Identities=22% Similarity=0.337 Sum_probs=187.5
Q ss_pred ccccccccceEEEEEcCCCCEEEEeeCC--------CcEEEEEeCCCC-------ceeeEEEe-ccccCeEEEEecCCCC
Q 036510 5 KIETGHEDTVHDVAMDYYGKRLATASSD--------YSIKIIGVGNNT-------SQHLAKLS-GHKGAVWEVAWAHPKF 68 (288)
Q Consensus 5 ~~~~~h~~~v~~~~~s~~g~~l~s~~~d--------~~i~lwd~~~~~-------~~~~~~~~-~h~~~v~~~~~~~~~~ 68 (288)
+.+..|-+.|..++-+|..+.|++..+. -.+.||.+..+- .+++..|. .+.+.|.++.|-|+
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pn-- 134 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPN-- 134 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCC--
Confidence 4566889999999999866555544433 337789875332 23455555 56678999999763
Q ss_pred CCEEEEeeCCCcEEEeecCCCCceEEe---EEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEee
Q 036510 69 GSILASCSFDGTVIIWKEGNSNEWIKD---HVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRID 145 (288)
Q Consensus 69 ~~~l~s~s~d~~v~iwd~~~~~~~~~~---~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~ 145 (288)
+..+++-. |..|.+|++..+.+.... ..-.+++...++-+|+|+..+..+++. .|++++.||+|++... ..+.
T Consensus 135 s~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~--~sI~ 210 (370)
T KOG1007|consen 135 SDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKN--NSIE 210 (370)
T ss_pred CCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhh--cchh
Confidence 67777655 899999998765431110 001135667888899997767766654 6899999999976432 3456
Q ss_pred ccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCC
Q 036510 146 QAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPK 225 (288)
Q Consensus 146 ~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~ 225 (288)
.+|.-.|..++|+|+.. ..|+|++.|+.|+|||.+... ..+.++.+|..+|++|.|+|.- +
T Consensus 211 dAHgq~vrdlDfNpnkq-------------~~lvt~gDdgyvriWD~R~tk---~pv~el~~HsHWvW~VRfn~~h---d 271 (370)
T KOG1007|consen 211 DAHGQRVRDLDFNPNKQ-------------HILVTCGDDGYVRIWDTRKTK---FPVQELPGHSHWVWAVRFNPEH---D 271 (370)
T ss_pred hhhcceeeeccCCCCce-------------EEEEEcCCCccEEEEeccCCC---ccccccCCCceEEEEEEecCcc---c
Confidence 68888899999999863 689999999999999998754 3466789999999999999974 6
Q ss_pred cEEEEEeCCCcEEEEEeecCC---C--------------cc---------cceEeeccccCeEEEEeec-CCCEEEEEeC
Q 036510 226 STIASASEDGKVIIWTVAREG---D--------------QW---------EGKVLHDFKTPVYRVSWSL-TGNILAVADG 278 (288)
Q Consensus 226 ~~l~s~s~D~~i~iw~~~~~~---~--------------~~---------~~~~~~~~~~~i~~~~~sp-dg~~l~s~~~ 278 (288)
++|++||.|..|.+|....-. + .. ....+.+|+..|++++||. |--+||+-|-
T Consensus 272 qLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSY 351 (370)
T KOG1007|consen 272 QLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSY 351 (370)
T ss_pred eEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEecc
Confidence 799999999999999875421 0 00 0112345778899999996 5678999999
Q ss_pred CCcEEE
Q 036510 279 NNNVTL 284 (288)
Q Consensus 279 d~~v~~ 284 (288)
||.+.|
T Consensus 352 DGRviI 357 (370)
T KOG1007|consen 352 DGRVII 357 (370)
T ss_pred CceEEe
Confidence 999866
No 124
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=8.4e-23 Score=171.87 Aligned_cols=212 Identities=23% Similarity=0.349 Sum_probs=165.8
Q ss_pred ccccccceEEEEEcCC-CCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEee
Q 036510 7 ETGHEDTVHDVAMDYY-GKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK 85 (288)
Q Consensus 7 ~~~h~~~v~~~~~s~~-g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd 85 (288)
.++|+++|-.++|+.. .+.|||||.|.+|++||++. +++..++..|.+.|.++.|.+ ..+.+|++||.|++|++.|
T Consensus 239 ~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~--g~p~~s~~~~~k~Vq~l~wh~-~~p~~LLsGs~D~~V~l~D 315 (463)
T KOG0270|consen 239 ASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDT--GKPKSSITHHGKKVQTLEWHP-YEPSVLLSGSYDGTVALKD 315 (463)
T ss_pred cccchHHHHHHHhccccceeEEecCCCceEEEEEcCC--CCcceehhhcCCceeEEEecC-CCceEEEeccccceEEeee
Confidence 4589999999999875 47899999999999999964 467788888999999999965 4689999999999999999
Q ss_pred cCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCc
Q 036510 86 EGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGA 165 (288)
Q Consensus 86 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~ 165 (288)
.+..........+ .+.|-.+.|+|.. ...+.++..||+++-+|+|..+ .+.-..++|..+|..|.+++..+
T Consensus 316 ~R~~~~s~~~wk~---~g~VEkv~w~~~s-e~~f~~~tddG~v~~~D~R~~~--~~vwt~~AHd~~ISgl~~n~~~p--- 386 (463)
T KOG0270|consen 316 CRDPSNSGKEWKF---DGEVEKVAWDPHS-ENSFFVSTDDGTVYYFDIRNPG--KPVWTLKAHDDEISGLSVNIQTP--- 386 (463)
T ss_pred ccCccccCceEEe---ccceEEEEecCCC-ceeEEEecCCceEEeeecCCCC--CceeEEEeccCCcceEEecCCCC---
Confidence 9854332222233 4679999999975 5568888999999999999875 33456689999999999998775
Q ss_pred eecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecC
Q 036510 166 LVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVARE 245 (288)
Q Consensus 166 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~ 245 (288)
++++|+|.|+.+++|++..... +.+......-+...|.++.|+- ...+|.|+.-+.++|||+...
T Consensus 387 ----------~~l~t~s~d~~Vklw~~~~~~~--~~v~~~~~~~~rl~c~~~~~~~---a~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 387 ----------GLLSTASTDKVVKLWKFDVDSP--KSVKEHSFKLGRLHCFALDPDV---AFTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred ----------cceeeccccceEEEEeecCCCC--cccccccccccceeecccCCCc---ceEEEecCccceEEEeecccC
Confidence 7899999999999999864321 1112211112236777888874 467888888889999998753
No 125
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=1.2e-23 Score=173.11 Aligned_cols=210 Identities=19% Similarity=0.237 Sum_probs=153.5
Q ss_pred eeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCC
Q 036510 46 QHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSD 125 (288)
Q Consensus 46 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d 125 (288)
+.+.+|.||.+.|.+++-.| ..-..++|||.||.|+|||+.+-. +..++..|.+.|..|++.- ..++++++|
T Consensus 57 PFv~~L~gHrdGV~~lakhp-~~ls~~aSGs~DG~VkiWnlsqR~---~~~~f~AH~G~V~Gi~v~~----~~~~tvgdD 128 (433)
T KOG0268|consen 57 PFVGSLDGHRDGVSCLAKHP-NKLSTVASGSCDGEVKIWNLSQRE---CIRTFKAHEGLVRGICVTQ----TSFFTVGDD 128 (433)
T ss_pred cchhhccccccccchhhcCc-chhhhhhccccCceEEEEehhhhh---hhheeecccCceeeEEecc----cceEEecCC
Confidence 34788899999999999643 334678999999999999997655 4567889999999999875 236788899
Q ss_pred CcEEEEeecCCC---------------------------CeeeE--------EeeccCCCCeeEEEeCCCCCCCceeccc
Q 036510 126 GNISVFTARADG---------------------------GWDTS--------RIDQAHPVGVTSVSWAPSTAPGALVGSG 170 (288)
Q Consensus 126 ~~i~i~d~~~~~---------------------------~~~~~--------~~~~~~~~~v~~i~~~p~~~~~~~~~~~ 170 (288)
++|+.|.+.-+. ....+ ..+.--...|.++.|+|..
T Consensus 129 KtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvE--------- 199 (433)
T KOG0268|consen 129 KTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVE--------- 199 (433)
T ss_pred cceeeeeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCc---------
Confidence 999999742110 00000 0011112335555555554
Q ss_pred ccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCccc
Q 036510 171 FLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWE 250 (288)
Q Consensus 171 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~ 250 (288)
...|++++.|++|.|||++.+.-..+.+..+ .-+.++|+|.. --|++|+.|-.+..+|.+....+
T Consensus 200 ----TsILas~~sDrsIvLyD~R~~~Pl~KVi~~m-----RTN~IswnPea----fnF~~a~ED~nlY~~DmR~l~~p-- 264 (433)
T KOG0268|consen 200 ----TSILASCASDRSIVLYDLRQASPLKKVILTM-----RTNTICWNPEA----FNFVAANEDHNLYTYDMRNLSRP-- 264 (433)
T ss_pred ----chheeeeccCCceEEEecccCCccceeeeec-----cccceecCccc----cceeeccccccceehhhhhhccc--
Confidence 3678999999999999999874332332222 23789999953 46999999999999999864322
Q ss_pred ceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510 251 GKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 251 ~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~ 287 (288)
.....+|.+.|++++|||.|+.|++||-|++||||..
T Consensus 265 ~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~ 301 (433)
T KOG0268|consen 265 LNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPV 301 (433)
T ss_pred chhhcccceeEEEeccCCCcchhccccccceEEEeec
Confidence 2344567788999999999999999999999999974
No 126
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.90 E-value=2.5e-22 Score=175.66 Aligned_cols=255 Identities=18% Similarity=0.258 Sum_probs=171.7
Q ss_pred ccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeec
Q 036510 7 ETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE 86 (288)
Q Consensus 7 ~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~ 86 (288)
...|..+|.+++|-|...+|++++.|.++++||+..........+-||...|.++||.+. +...|++|+.||.|.|||+
T Consensus 96 ~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~-n~~vF~tGgRDg~illWD~ 174 (720)
T KOG0321|consen 96 PLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPT-NPAVFCTGGRDGEILLWDC 174 (720)
T ss_pred cccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccC-CCcceeeccCCCcEEEEEE
Confidence 347999999999999668899999999999999975432223348899999999999764 6889999999999999998
Q ss_pred CCCC----------------c---e-----EEeEEeecCCCceeE---EEeccCCCCeEEEEEeC-CCcEEEEeecCCCC
Q 036510 87 GNSN----------------E---W-----IKDHVFEDHKSSVNS---IDWAPHELGLCLACGSS-DGNISVFTARADGG 138 (288)
Q Consensus 87 ~~~~----------------~---~-----~~~~~~~~h~~~v~~---l~~~p~~~~~~l~sg~~-d~~i~i~d~~~~~~ 138 (288)
+-.. + . ...+....+...|.+ +-+..|+ ..||+++. |+.|++||+|....
T Consensus 175 R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe--~tlaSaga~D~~iKVWDLRk~~~ 252 (720)
T KOG0321|consen 175 RCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDE--STLASAGAADSTIKVWDLRKNYT 252 (720)
T ss_pred eccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEecc--ceeeeccCCCcceEEEeeccccc
Confidence 5322 0 0 000112234444554 4444553 35666655 99999999997532
Q ss_pred ee---eEEeecc--C---CCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCc
Q 036510 139 WD---TSRIDQA--H---PVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTD 210 (288)
Q Consensus 139 ~~---~~~~~~~--~---~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~ 210 (288)
.. +...... | ..++.++.....+. .++|++. |++|.+||+..-. +..+..+.++..
T Consensus 253 ~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt-------------~L~AsCt-D~sIy~ynm~s~s--~sP~~~~sg~~~ 316 (720)
T KOG0321|consen 253 AYRQEPRGSDKYPTHSKRSVGQVNLILDSSGT-------------YLFASCT-DNSIYFYNMRSLS--ISPVAEFSGKLN 316 (720)
T ss_pred ccccCCCcccCccCcccceeeeEEEEecCCCC-------------eEEEEec-CCcEEEEeccccC--cCchhhccCccc
Confidence 11 1111111 2 12345555444442 4566665 9999999997521 112223333322
Q ss_pred ---ceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecC-CCEEEEEeCCCcEEEeE
Q 036510 211 ---WVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLT-GNILAVADGNNNVTLWE 286 (288)
Q Consensus 211 ---~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spd-g~~l~s~~~d~~v~~w~ 286 (288)
+|.+ ..+|+ +.+|++|+.|....+|.+...... ...+.+|.-.|+.++|.|. -.-+++++.|.+++||+
T Consensus 317 ~sf~vks-~lSpd----~~~l~SgSsd~~ayiw~vs~~e~~--~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~ 389 (720)
T KOG0321|consen 317 SSFYVKS-ELSPD----DCSLLSGSSDEQAYIWVVSSPEAP--PALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWR 389 (720)
T ss_pred ceeeeee-ecCCC----CceEeccCCCcceeeeeecCccCC--hhhhhCcceEEEEEeeccccCCCceeeccCcceEEEe
Confidence 3333 56676 478999999999999999865432 2344566677999999985 34567779999999998
Q ss_pred c
Q 036510 287 E 287 (288)
Q Consensus 287 ~ 287 (288)
+
T Consensus 390 l 390 (720)
T KOG0321|consen 390 L 390 (720)
T ss_pred c
Confidence 5
No 127
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.90 E-value=1.3e-22 Score=173.58 Aligned_cols=219 Identities=17% Similarity=0.224 Sum_probs=152.9
Q ss_pred eEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCc-eE-EeEEeecCCCceeEEEeccCCCCeEEEEEeCC
Q 036510 48 LAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNE-WI-KDHVFEDHKSSVNSIDWAPHELGLCLACGSSD 125 (288)
Q Consensus 48 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~-~~-~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d 125 (288)
-.++.+|+..|.++++.++ |..|+|||.|-+|++||+..-.. .. .....+-....|+++.|+|.+...++++| .
T Consensus 160 Ei~l~hgtk~Vsal~~Dp~--GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg--~ 235 (641)
T KOG0772|consen 160 EIQLKHGTKIVSALAVDPS--GARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSG--S 235 (641)
T ss_pred eEeccCCceEEEEeeecCC--CceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEec--C
Confidence 4567899999999998754 99999999999999999742111 00 00112234457999999997543344444 4
Q ss_pred CcEEEEeecCCCCeeeE----------EeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCC
Q 036510 126 GNISVFTARADGGWDTS----------RIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNG 195 (288)
Q Consensus 126 ~~i~i~d~~~~~~~~~~----------~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 195 (288)
-..+|+|=. +..+... ...++|...+++-.|.|... ..++|++.|+++||||+...
T Consensus 236 aqakl~DRd-G~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k-------------~~FlT~s~DgtlRiWdv~~~ 301 (641)
T KOG0772|consen 236 AQAKLLDRD-GFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNK-------------EEFLTCSYDGTLRIWDVNNT 301 (641)
T ss_pred cceeEEccC-CceeeeeeccchhhhhhhccCCceeeeeccccccCcc-------------cceEEecCCCcEEEEecCCc
Confidence 467777632 2111111 12467888999999999975 67899999999999999764
Q ss_pred ceeeeeeecc--ccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccc--eEeeccccCeEEEEeecCCC
Q 036510 196 IWKMDCFPAL--QMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEG--KVLHDFKTPVYRVSWSLTGN 271 (288)
Q Consensus 196 ~~~~~~~~~~--~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~--~~~~~~~~~i~~~~~spdg~ 271 (288)
....+.+... .+..-.+..+.|+|++ ..||+|..||.|.+|+.........- ...|..+..|++++||+||+
T Consensus 302 k~q~qVik~k~~~g~Rv~~tsC~~nrdg----~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~ 377 (641)
T KOG0772|consen 302 KSQLQVIKTKPAGGKRVPVTSCAWNRDG----KLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGN 377 (641)
T ss_pred hhheeEEeeccCCCcccCceeeecCCCc----chhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccc
Confidence 3222222221 3444468889999985 67999999999999996432211111 11122234799999999999
Q ss_pred EEEEEeCCCcEEEeEcC
Q 036510 272 ILAVADGNNNVTLWEEA 288 (288)
Q Consensus 272 ~l~s~~~d~~v~~w~~~ 288 (288)
+|++=+.|++++|||++
T Consensus 378 ~LlSRg~D~tLKvWDLr 394 (641)
T KOG0772|consen 378 YLLSRGFDDTLKVWDLR 394 (641)
T ss_pred hhhhccCCCceeeeecc
Confidence 99999999999999964
No 128
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.90 E-value=2.2e-22 Score=171.80 Aligned_cols=244 Identities=19% Similarity=0.293 Sum_probs=186.9
Q ss_pred cccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCC-ceeeEEEecc--ccCeEEEEecCCCCCCEEEEeeCCCcEEEe
Q 036510 8 TGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNT-SQHLAKLSGH--KGAVWEVAWAHPKFGSILASCSFDGTVIIW 84 (288)
Q Consensus 8 ~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~-~~~~~~~~~h--~~~v~~~~~~~~~~~~~l~s~s~d~~v~iw 84 (288)
..|..-|..+.+|...+++.+|+.. -|+|||+..+. ...+.+|..- ..-|.++...+ +|+.|+.|+.-.++.||
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgGkg-cVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~p--dgrtLivGGeastlsiW 492 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGGKG-CVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLP--DGRTLIVGGEASTLSIW 492 (705)
T ss_pred hccCcEEEEEEecCCcceeEecCCC-eEEEeeccCCCCCCccccccccCcccceeeeEecC--CCceEEeccccceeeee
Confidence 3688888888899888999998865 68999996432 2223333322 33466777665 49999999999999999
Q ss_pred ecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCC
Q 036510 85 KEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPG 164 (288)
Q Consensus 85 d~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~ 164 (288)
|+...+.-++ ..+..-.-.+++|+.+|| .++..++..||+|+|||+++. ..++..++|++++.||+.++++
T Consensus 493 DLAapTprik-aeltssapaCyALa~spD--akvcFsccsdGnI~vwDLhnq---~~VrqfqGhtDGascIdis~dG--- 563 (705)
T KOG0639|consen 493 DLAAPTPRIK-AELTSSAPACYALAISPD--AKVCFSCCSDGNIAVWDLHNQ---TLVRQFQGHTDGASCIDISKDG--- 563 (705)
T ss_pred eccCCCcchh-hhcCCcchhhhhhhcCCc--cceeeeeccCCcEEEEEcccc---eeeecccCCCCCceeEEecCCC---
Confidence 9976543221 122222345778899998 456677788999999999864 2356678999999999999987
Q ss_pred ceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeec
Q 036510 165 ALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAR 244 (288)
Q Consensus 165 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~ 244 (288)
..|.||+-|++||.||++++.. +.. ....+.|.++.++|+. ..|+.|=..+.+.+-..+.
T Consensus 564 -----------tklWTGGlDntvRcWDlregrq----lqq-hdF~SQIfSLg~cP~~----dWlavGMens~vevlh~sk 623 (705)
T KOG0639|consen 564 -----------TKLWTGGLDNTVRCWDLREGRQ----LQQ-HDFSSQIFSLGYCPTG----DWLAVGMENSNVEVLHTSK 623 (705)
T ss_pred -----------ceeecCCCccceeehhhhhhhh----hhh-hhhhhhheecccCCCc----cceeeecccCcEEEEecCC
Confidence 7899999999999999998631 111 2235579999999984 5799999999998887664
Q ss_pred CCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510 245 EGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 245 ~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~ 287 (288)
. ++..++.|.+.|.+++|.+-|++|++.+.|+.+..|++
T Consensus 624 p----~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrt 662 (705)
T KOG0639|consen 624 P----EKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRT 662 (705)
T ss_pred c----cceeecccccEEEEEEecccCceeeecCchhhhhhccC
Confidence 3 34567788899999999999999999999999999974
No 129
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=6.1e-24 Score=188.01 Aligned_cols=222 Identities=23% Similarity=0.359 Sum_probs=178.2
Q ss_pred CEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCC
Q 036510 24 KRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKS 103 (288)
Q Consensus 24 ~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~ 103 (288)
-.++....+-.+++||... +..|...|.++..- ..++.+++|+.|-.+.+|.+.... ....+.+|..
T Consensus 5 ~~~m~~~~~t~Lr~~~~~~--------~~~hsaav~~lk~~--~s~r~~~~Gg~~~k~~L~~i~kp~---~i~S~~~hes 71 (825)
T KOG0267|consen 5 EFLMKTKRATKLRVWDTRE--------FVAHSAAVGCLKIR--KSSRSLVTGGEDEKVNLWAIGKPN---AITSLTGHES 71 (825)
T ss_pred cccceeeeeeccccccchh--------hhhhhhhhceeeee--ccceeeccCCCceeeccccccCCc---hhheeeccCC
Confidence 3455555566677777532 23577777777752 237899999999999999875443 2334789999
Q ss_pred ceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeec
Q 036510 104 SVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGC 183 (288)
Q Consensus 104 ~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~ 183 (288)
+|.||.|++. ..++++|+.+|+|++||+.+.. .++.+.+|...+.++.|+|-+ .++++|+.
T Consensus 72 pIeSl~f~~~--E~LlaagsasgtiK~wDleeAk---~vrtLtgh~~~~~sv~f~P~~--------------~~~a~gSt 132 (825)
T KOG0267|consen 72 PIESLTFDTS--ERLLAAGSASGTIKVWDLEEAK---IVRTLTGHLLNITSVDFHPYG--------------EFFASGST 132 (825)
T ss_pred cceeeecCcc--hhhhcccccCCceeeeehhhhh---hhhhhhccccCcceeeeccce--------------EEeccccc
Confidence 9999999998 4679999999999999998653 245667899999999999987 67899999
Q ss_pred CCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEE
Q 036510 184 DNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYR 263 (288)
Q Consensus 184 d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~ 263 (288)
|..+++||.+.. -|.+.+.+|...|..+.|+|++ .++++|++|.+++|||..... ....+..|.+++.+
T Consensus 133 dtd~~iwD~Rk~----Gc~~~~~s~~~vv~~l~lsP~G----r~v~~g~ed~tvki~d~~agk---~~~ef~~~e~~v~s 201 (825)
T KOG0267|consen 133 DTDLKIWDIRKK----GCSHTYKSHTRVVDVLRLSPDG----RWVASGGEDNTVKIWDLTAGK---LSKEFKSHEGKVQS 201 (825)
T ss_pred cccceehhhhcc----CceeeecCCcceeEEEeecCCC----ceeeccCCcceeeeecccccc---cccccccccccccc
Confidence 999999999843 4778888999999999999984 789999999999999986431 11223445689999
Q ss_pred EEeecCCCEEEEEeCCCcEEEeEcC
Q 036510 264 VSWSLTGNILAVADGNNNVTLWEEA 288 (288)
Q Consensus 264 ~~~spdg~~l~s~~~d~~v~~w~~~ 288 (288)
+.|+|..-.+++|++|++|++||++
T Consensus 202 le~hp~e~Lla~Gs~d~tv~f~dle 226 (825)
T KOG0267|consen 202 LEFHPLEVLLAPGSSDRTVRFWDLE 226 (825)
T ss_pred cccCchhhhhccCCCCceeeeeccc
Confidence 9999999999999999999999964
No 130
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.89 E-value=5.8e-21 Score=168.54 Aligned_cols=257 Identities=20% Similarity=0.300 Sum_probs=189.0
Q ss_pred cccccccceEEEEEcCCCC---EEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEE-eeCCCcE
Q 036510 6 IETGHEDTVHDVAMDYYGK---RLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILAS-CSFDGTV 81 (288)
Q Consensus 6 ~~~~h~~~v~~~~~s~~g~---~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s-~s~d~~v 81 (288)
.+.||+.+|+++.+-|+.. +++||+.|+.|.+|.+..+-...+.++.+|...+.++.- .....+ .+.|+++
T Consensus 49 ~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~a-----~~~~~~~~~ad~~v 123 (764)
T KOG1063|consen 49 TLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCVVA-----RSSVMTCKAADGTV 123 (764)
T ss_pred eccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEEEe-----eeeEEEeeccCceE
Confidence 4669999999999988776 899999999999999864444667888888877766552 223333 3789999
Q ss_pred EEeecCCCC-----------------------------------------------ceEEeEEeecCCCceeEEEeccCC
Q 036510 82 IIWKEGNSN-----------------------------------------------EWIKDHVFEDHKSSVNSIDWAPHE 114 (288)
Q Consensus 82 ~iwd~~~~~-----------------------------------------------~~~~~~~~~~h~~~v~~l~~~p~~ 114 (288)
.+|+..+.+ .+.....+.+|.+.|.+++|....
T Consensus 124 ~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~ 203 (764)
T KOG1063|consen 124 SVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLG 203 (764)
T ss_pred EEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccC
Confidence 999873222 011223466899999999997654
Q ss_pred C-CeEEEEEeCCCcEEEEeecCCCC------------------ee---eE-------EeeccCCCCeeEEEeCCCCCCCc
Q 036510 115 L-GLCLACGSSDGNISVFTARADGG------------------WD---TS-------RIDQAHPVGVTSVSWAPSTAPGA 165 (288)
Q Consensus 115 ~-~~~l~sg~~d~~i~i~d~~~~~~------------------~~---~~-------~~~~~~~~~v~~i~~~p~~~~~~ 165 (288)
. ..+||++++|.+||||.+..... .. .. ..+++|.+-|.++.|.|..
T Consensus 204 ~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~---- 279 (764)
T KOG1063|consen 204 GDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEG---- 279 (764)
T ss_pred CCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccch----
Confidence 3 56899999999999998753220 00 00 1246899999999999986
Q ss_pred eecccccCCCceeEEeecCCcEEEEEEeCC--ceeee-eeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEe
Q 036510 166 LVGSGFLDPVQKLCSGGCDNTVKVWKLYNG--IWKMD-CFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTV 242 (288)
Q Consensus 166 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~--~~~~~-~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~ 242 (288)
..|.++|.|+++.+|...+. .|.-. .+-.+.|....-....|+|++ +.|++-+.-|..++|..
T Consensus 280 ----------~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~----~~ii~~g~~Gg~hlWkt 345 (764)
T KOG1063|consen 280 ----------LDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNS----NVIIAHGRTGGFHLWKT 345 (764)
T ss_pred ----------hhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCC----CEEEEecccCcEEEEec
Confidence 46889999999999987543 44311 223334444456788999985 68999999999999983
Q ss_pred ecCCCcccc-eEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510 243 AREGDQWEG-KVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE 286 (288)
Q Consensus 243 ~~~~~~~~~-~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~ 286 (288)
..+ ..+.. ..+.+|-+.|..++|+|.|++|++++.|.|.||+-
T Consensus 346 ~d~-~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa 389 (764)
T KOG1063|consen 346 KDK-TFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFA 389 (764)
T ss_pred cCc-cceeeccccccccccceeeeecCCCCEEEEeccccceeeec
Confidence 332 22322 33467778899999999999999999999999973
No 131
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1.3e-22 Score=187.74 Aligned_cols=245 Identities=20% Similarity=0.389 Sum_probs=186.5
Q ss_pred cceEEEEEcCCCCE----EEEeeCCCcEEEEEeCC----CCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEE
Q 036510 12 DTVHDVAMDYYGKR----LATASSDYSIKIIGVGN----NTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVII 83 (288)
Q Consensus 12 ~~v~~~~~s~~g~~----l~s~~~d~~i~lwd~~~----~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~i 83 (288)
..-+.+.|.+.|.. |+.|..||.|-+||... ...+.+.+...|++.|.++.|++. .+++|+||+.||.|.|
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~-q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPF-QGNLLASGADDGEILI 143 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeecccc-CCceeeccCCCCcEEE
Confidence 34567888887755 88888999999998753 233557888899999999999875 4789999999999999
Q ss_pred eecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCC--CCeeEEEeCCCC
Q 036510 84 WKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHP--VGVTSVSWAPST 161 (288)
Q Consensus 84 wd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~--~~v~~i~~~p~~ 161 (288)
||+.+..+..... -......|.+++|+... ..+|++++.+|+..|||+|.....- ....+. ..+..+.|+|+.
T Consensus 144 WDlnn~~tP~~~~-~~~~~~eI~~lsWNrkv-qhILAS~s~sg~~~iWDlr~~~pii---~ls~~~~~~~~S~l~WhP~~ 218 (1049)
T KOG0307|consen 144 WDLNKPETPFTPG-SQAPPSEIKCLSWNRKV-SHILASGSPSGRAVIWDLRKKKPII---KLSDTPGRMHCSVLAWHPDH 218 (1049)
T ss_pred eccCCcCCCCCCC-CCCCcccceEeccchhh-hHHhhccCCCCCceeccccCCCccc---ccccCCCccceeeeeeCCCC
Confidence 9997644221110 11245689999999753 6689999999999999999764321 112222 347789999997
Q ss_pred CCCceecccccCCCceeEEeecCC---cEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEE
Q 036510 162 APGALVGSGFLDPVQKLCSGGCDN---TVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVI 238 (288)
Q Consensus 162 ~~~~~~~~~~~~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~ 238 (288)
. ..+++++.|. .|.+||+|... ...+.+.+|...|.++.|++.. ..+++|++.|+.|.
T Consensus 219 a-------------Tql~~As~dd~~PviqlWDlR~as---sP~k~~~~H~~GilslsWc~~D---~~lllSsgkD~~ii 279 (1049)
T KOG0307|consen 219 A-------------TQLLVASGDDSAPVIQLWDLRFAS---SPLKILEGHQRGILSLSWCPQD---PRLLLSSGKDNRII 279 (1049)
T ss_pred c-------------eeeeeecCCCCCceeEeecccccC---CchhhhcccccceeeeccCCCC---chhhhcccCCCCee
Confidence 4 4555555554 48999998754 2345678999999999999973 57899999999999
Q ss_pred EEEeecCCCcccceEeecc---ccCeEEEEeecCCC-EEEEEeCCCcEEEeEc
Q 036510 239 IWTVAREGDQWEGKVLHDF---KTPVYRVSWSLTGN-ILAVADGNNNVTLWEE 287 (288)
Q Consensus 239 iw~~~~~~~~~~~~~~~~~---~~~i~~~~~spdg~-~l~s~~~d~~v~~w~~ 287 (288)
+|+.+.. +.+.++ ++++..+.|.|... .|++++-||.|.|+.+
T Consensus 280 ~wN~~tg------Evl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl 326 (1049)
T KOG0307|consen 280 CWNPNTG------EVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSL 326 (1049)
T ss_pred EecCCCc------eEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeee
Confidence 9998753 334333 46899999999776 8999999999999864
No 132
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.88 E-value=1.1e-20 Score=169.93 Aligned_cols=255 Identities=20% Similarity=0.286 Sum_probs=181.0
Q ss_pred cccceEEEEEcCC-CCEEEEeeCCCcEEEEEeCCCCce----eeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEe
Q 036510 10 HEDTVHDVAMDYY-GKRLATASSDYSIKIIGVGNNTSQ----HLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIW 84 (288)
Q Consensus 10 h~~~v~~~~~s~~-g~~l~s~~~d~~i~lwd~~~~~~~----~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iw 84 (288)
-...|.+++|+|. .++|+.|.++|.|.+||+...... .......|..+++.+.|.....+.-|+|+|.||.|+.|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 3578999999984 688999999999999998654321 12334569999999999976555779999999999999
Q ss_pred ecCCCCceEEeEEe---e------cCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeee------EEeeccCC
Q 036510 85 KEGNSNEWIKDHVF---E------DHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDT------SRIDQAHP 149 (288)
Q Consensus 85 d~~~~~~~~~~~~~---~------~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~------~~~~~~~~ 149 (288)
+++.-........+ . .-.-.+++++|.|.. ...++.|+.+|.|..-+ |.+..-.. ......|.
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~-p~~FiVGTe~G~v~~~~-r~g~~~~~~~~~~~~~~~~~h~ 398 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTD-PNHFIVGTEEGKVYKGC-RKGYTPAPEVSYKGHSTFITHI 398 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCC-CceEEEEcCCcEEEEEe-ccCCcccccccccccccccccC
Confidence 87543211000000 0 112358899998875 45688899999886522 21211111 12345678
Q ss_pred CCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEE
Q 036510 150 VGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIA 229 (288)
Q Consensus 150 ~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~ 229 (288)
+.|.++.++|... ..+.+++ |.+++||...... ..+..+..+.++|.+++|||.. +..|+
T Consensus 399 g~v~~v~~nPF~~-------------k~fls~g-DW~vriWs~~~~~---~Pl~~~~~~~~~v~~vaWSptr---pavF~ 458 (555)
T KOG1587|consen 399 GPVYAVSRNPFYP-------------KNFLSVG-DWTVRIWSEDVIA---SPLLSLDSSPDYVTDVAWSPTR---PAVFA 458 (555)
T ss_pred cceEeeecCCCcc-------------ceeeeec-cceeEeccccCCC---CcchhhhhccceeeeeEEcCcC---ceEEE
Confidence 8999999999984 4455555 9999999976321 2334556788889999999985 67999
Q ss_pred EEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510 230 SASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 230 s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~ 287 (288)
++..||+|.+||+.........+. .-.....+.+.|++.|+.|++|+..|++++|++
T Consensus 459 ~~d~~G~l~iWDLl~~~~~Pv~s~-~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l 515 (555)
T KOG1587|consen 459 TVDGDGNLDIWDLLQDDEEPVLSQ-KVCSPALTRVRWSPNGKLLAVGDANGTTHILKL 515 (555)
T ss_pred EEcCCCceehhhhhccccCCcccc-cccccccceeecCCCCcEEEEecCCCcEEEEEc
Confidence 999999999999986432111111 111345677899999999999999999999985
No 133
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.88 E-value=4.8e-21 Score=161.90 Aligned_cols=256 Identities=18% Similarity=0.253 Sum_probs=182.1
Q ss_pred cccccceEEEEEcCCC--CEEEEeeCCCcEEEEEeC--CCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEE
Q 036510 8 TGHEDTVHDVAMDYYG--KRLATASSDYSIKIIGVG--NNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVII 83 (288)
Q Consensus 8 ~~h~~~v~~~~~s~~g--~~l~s~~~d~~i~lwd~~--~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~i 83 (288)
.-|.+.|++++|.|.- +++++|..-|.|-+||+. .+....+.-+..|.++|.++.|+|. +...+.+.|.||+|++
T Consensus 183 kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~-n~s~i~ssSyDGtiR~ 261 (498)
T KOG4328|consen 183 KVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPA-NTSQIYSSSYDGTIRL 261 (498)
T ss_pred EecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCC-ChhheeeeccCceeee
Confidence 3578899999999964 678999999999999994 2333457778899999999999874 4678999999999999
Q ss_pred eecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCC
Q 036510 84 WKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAP 163 (288)
Q Consensus 84 wd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~ 163 (288)
=|+.... ...+..+.........+.|+.+. .. ++.|..=|.+.+||.|.++.. .....-|...|++++++|..+
T Consensus 262 ~D~~~~i-~e~v~s~~~d~~~fs~~d~~~e~-~~-vl~~~~~G~f~~iD~R~~~s~--~~~~~lh~kKI~sv~~NP~~p- 335 (498)
T KOG4328|consen 262 QDFEGNI-SEEVLSLDTDNIWFSSLDFSAES-RS-VLFGDNVGNFNVIDLRTDGSE--YENLRLHKKKITSVALNPVCP- 335 (498)
T ss_pred eeecchh-hHHHhhcCccceeeeeccccCCC-cc-EEEeecccceEEEEeecCCcc--chhhhhhhcccceeecCCCCc-
Confidence 9986532 11111111123345566776543 33 455555558999999986541 122334777899999999885
Q ss_pred CceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEee
Q 036510 164 GALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVA 243 (288)
Q Consensus 164 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~ 243 (288)
.+|+|+|-|++.+|||++.-..+...+-....|+-.|.++.|||.+ ..|++.+.|.+|+|||..
T Consensus 336 ------------~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~----gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 336 ------------WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSG----GTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred ------------hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCC----CceEeeccCCceEEeecc
Confidence 7899999999999999976211111112235689999999999985 349999999999999984
Q ss_pred c--CCCcccceEeecc--ccCe--EEEEeecCCCEEEEEeCCCcEEEeE
Q 036510 244 R--EGDQWEGKVLHDF--KTPV--YRVSWSLTGNILAVADGNNNVTLWE 286 (288)
Q Consensus 244 ~--~~~~~~~~~~~~~--~~~i--~~~~~spdg~~l~s~~~d~~v~~w~ 286 (288)
- ........+.|.. ..++ .-+.|.||-.+|++|-.-+.|-|+|
T Consensus 400 ~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~ 448 (498)
T KOG4328|consen 400 CISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFD 448 (498)
T ss_pred cccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEc
Confidence 1 1111122333322 2333 4579999999999998877787776
No 134
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=2.2e-22 Score=186.24 Aligned_cols=215 Identities=24% Similarity=0.426 Sum_probs=167.2
Q ss_pred ccccccceEEEEEcCCC-CEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEee
Q 036510 7 ETGHEDTVHDVAMDYYG-KRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK 85 (288)
Q Consensus 7 ~~~h~~~v~~~~~s~~g-~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd 85 (288)
+..|++.|.++.|++.. +.||||+.||.|.|||+..........-..-.+.|.+++|++. ...+|+|++.+|.+.|||
T Consensus 112 ~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrk-vqhILAS~s~sg~~~iWD 190 (1049)
T KOG0307|consen 112 KSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRK-VSHILASGSPSGRAVIWD 190 (1049)
T ss_pred hcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchh-hhHHhhccCCCCCceecc
Confidence 44799999999999975 6999999999999999975321111101224678999999863 578999999999999999
Q ss_pred cCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCC--cEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCC
Q 036510 86 EGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDG--NISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAP 163 (288)
Q Consensus 86 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~ 163 (288)
++.....+.... ...+..+..+.|||+....++++...|+ .|.+||+|... .+.+.+++|..+|.+++|++.+.
T Consensus 191 lr~~~pii~ls~-~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as--sP~k~~~~H~~GilslsWc~~D~- 266 (1049)
T KOG0307|consen 191 LRKKKPIIKLSD-TPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS--SPLKILEGHQRGILSLSWCPQDP- 266 (1049)
T ss_pred ccCCCccccccc-CCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC--CchhhhcccccceeeeccCCCCc-
Confidence 987653332222 1222457789999998655544444444 78999998643 34566789999999999999874
Q ss_pred CceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEee
Q 036510 164 GALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVA 243 (288)
Q Consensus 164 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~ 243 (288)
++|+|++.|+.|.+|+..++ +.+..+-...+|+..|.|+|.. +..+++++.||.|.|+.+.
T Consensus 267 ------------~lllSsgkD~~ii~wN~~tg----Evl~~~p~~~nW~fdv~w~pr~---P~~~A~asfdgkI~I~sl~ 327 (1049)
T KOG0307|consen 267 ------------RLLLSSGKDNRIICWNPNTG----EVLGELPAQGNWCFDVQWCPRN---PSVMAAASFDGKISIYSLQ 327 (1049)
T ss_pred ------------hhhhcccCCCCeeEecCCCc----eEeeecCCCCcceeeeeecCCC---cchhhhheeccceeeeeee
Confidence 78999999999999999987 5666776678899999999964 5789999999999999997
Q ss_pred cC
Q 036510 244 RE 245 (288)
Q Consensus 244 ~~ 245 (288)
..
T Consensus 328 ~~ 329 (1049)
T KOG0307|consen 328 GT 329 (1049)
T ss_pred cC
Confidence 54
No 135
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.4e-20 Score=159.54 Aligned_cols=234 Identities=19% Similarity=0.327 Sum_probs=169.9
Q ss_pred CEEEEeeCC-CcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCC
Q 036510 24 KRLATASSD-YSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHK 102 (288)
Q Consensus 24 ~~l~s~~~d-~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~ 102 (288)
.|++++... ..+.+|.+.... ...+.---.+.|.+++-++ .|.+|+.|...+.+++|.+.++. +...+..|-
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~--~~~q~~v~Pg~v~al~s~n--~G~~l~ag~i~g~lYlWelssG~---LL~v~~aHY 123 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKD--QVVQYIVLPGPVHALASSN--LGYFLLAGTISGNLYLWELSSGI---LLNVLSAHY 123 (476)
T ss_pred hheeeecccCccccccccCchh--hhhhhcccccceeeeecCC--CceEEEeecccCcEEEEEecccc---HHHHHHhhc
Confidence 456665543 457778774321 1111112356788888654 48888888899999999998876 445667899
Q ss_pred CceeEEEeccCCCCeEEEEEeCCCcEEEEeecC------CCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCc
Q 036510 103 SSVNSIDWAPHELGLCLACGSSDGNISVFTARA------DGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQ 176 (288)
Q Consensus 103 ~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~------~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~ 176 (288)
..|+|+.|+-| +.++++|+.||.|.+|++.. .....+......|+-+|+++.-.+-+. ..
T Consensus 124 Q~ITcL~fs~d--gs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~------------~~ 189 (476)
T KOG0646|consen 124 QSITCLKFSDD--GSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGT------------NA 189 (476)
T ss_pred cceeEEEEeCC--CcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCc------------cc
Confidence 99999999976 67899999999999998742 111223455667888999987665432 15
Q ss_pred eeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCc--------
Q 036510 177 KLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQ-------- 248 (288)
Q Consensus 177 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~-------- 248 (288)
+|+|+|.|++||+||+..+. ++.++ .....+.++...|- +..+-.|+.+|.|.+.++......
T Consensus 190 rl~TaS~D~t~k~wdlS~g~----LLlti-~fp~si~av~lDpa----e~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~ 260 (476)
T KOG0646|consen 190 RLYTASEDRTIKLWDLSLGV----LLLTI-TFPSSIKAVALDPA----ERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKG 260 (476)
T ss_pred eEEEecCCceEEEEEeccce----eeEEE-ecCCcceeEEEccc----ccEEEecCCcceEEeeehhcCCcccccccccc
Confidence 79999999999999998873 22222 24556899999996 367778999999999887643211
Q ss_pred -----ccceEeecccc--CeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510 249 -----WEGKVLHDFKT--PVYRVSWSLTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 249 -----~~~~~~~~~~~--~i~~~~~spdg~~l~s~~~d~~v~~w~~ 287 (288)
.....+.+|.+ .|++++.|-||+.|++|+.||+|+|||+
T Consensus 261 ~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi 306 (476)
T KOG0646|consen 261 RHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDI 306 (476)
T ss_pred cccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEec
Confidence 11122234544 8999999999999999999999999995
No 136
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.88 E-value=1.8e-20 Score=166.18 Aligned_cols=253 Identities=17% Similarity=0.245 Sum_probs=185.1
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEEEeCCCC-ceeeEEEeccccCeEEEEecCCC---------CCCEEEEeeCCCcEEEee
Q 036510 16 DVAMDYYGKRLATASSDYSIKIIGVGNNT-SQHLAKLSGHKGAVWEVAWAHPK---------FGSILASCSFDGTVIIWK 85 (288)
Q Consensus 16 ~~~~s~~g~~l~s~~~d~~i~lwd~~~~~-~~~~~~~~~h~~~v~~~~~~~~~---------~~~~l~s~s~d~~v~iwd 85 (288)
.+.|++....|...=+|.++.+||+.... .-....+.-|..-||++.-.|-. ....|++||.|++||+|+
T Consensus 329 A~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~ 408 (1080)
T KOG1408|consen 329 ACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWD 408 (1080)
T ss_pred EEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEee
Confidence 34689888888888899999999996432 12244555688889988754410 135799999999999999
Q ss_pred cCCCC--ceEEeE--------------------------------EeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEE
Q 036510 86 EGNSN--EWIKDH--------------------------------VFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVF 131 (288)
Q Consensus 86 ~~~~~--~~~~~~--------------------------------~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~ 131 (288)
+.... ...... .....+..+.+++++|+ +..||+|..-|+|++|
T Consensus 409 l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~--gqhLAsGDr~GnlrVy 486 (1080)
T KOG1408|consen 409 LAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPD--GQHLASGDRGGNLRVY 486 (1080)
T ss_pred cccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCC--cceecccCccCceEEE
Confidence 85311 000000 01124457899999998 7889999999999999
Q ss_pred eecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcc
Q 036510 132 TARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDW 211 (288)
Q Consensus 132 d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~ 211 (288)
++.+- ......++|...|.|+.++-.... .++|++++.|+.|.++|+... ..+++++.+|...
T Consensus 487 ~Lq~l---~~~~~~eAHesEilcLeyS~p~~~-----------~kLLASasrdRlIHV~Dv~rn---y~l~qtld~HSss 549 (1080)
T KOG1408|consen 487 DLQEL---EYTCFMEAHESEILCLEYSFPVLT-----------NKLLASASRDRLIHVYDVKRN---YDLVQTLDGHSSS 549 (1080)
T ss_pred Eehhh---hhhhheecccceeEEEeecCchhh-----------hHhhhhccCCceEEEEecccc---cchhhhhcccccc
Confidence 99753 233456789999999999754311 167999999999999999653 2456678888888
Q ss_pred eEEEEecCCCCC---------------------------------------------CCcEEEEEeCCCcEEEEEeecCC
Q 036510 212 VRDVAWAPNLGL---------------------------------------------PKSTIASASEDGKVIIWTVAREG 246 (288)
Q Consensus 212 V~~v~~sp~~~~---------------------------------------------~~~~l~s~s~D~~i~iw~~~~~~ 246 (288)
|++|.|.-.+.. ..+++++++.|++|+||+++..+
T Consensus 550 ITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgK 629 (1080)
T KOG1408|consen 550 ITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGK 629 (1080)
T ss_pred eeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccc
Confidence 888888764310 04679999999999999998764
Q ss_pred CcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510 247 DQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 247 ~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~ 287 (288)
+....+--+++.+....+...|.|-|+|+...|+++.++|.
T Consensus 630 q~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df 670 (1080)
T KOG1408|consen 630 QVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDF 670 (1080)
T ss_pred eeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEe
Confidence 32111111344567788999999999999999999999994
No 137
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=1.1e-20 Score=153.44 Aligned_cols=213 Identities=18% Similarity=0.283 Sum_probs=148.3
Q ss_pred eEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCc--eEEeEEeecCCCceeEEEeccCCCCeEEEEEeCC
Q 036510 48 LAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNE--WIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSD 125 (288)
Q Consensus 48 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~--~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d 125 (288)
+..|.+|.+.|++++|+.+ |.+|+|++.|++|+||++++... ...++. ....+..+.+.|.||.. ..+++.-..
T Consensus 79 ~~~LKgH~~~vt~~~FsSd--GK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~-nve~dhpT~V~FapDc~-s~vv~~~~g 154 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSD--GKKLATISGDRSIRLWDVRDFENKEHRCIRQ-NVEYDHPTRVVFAPDCK-SVVVSVKRG 154 (420)
T ss_pred hhhhhccCCceeeeEEcCC--CceeEEEeCCceEEEEecchhhhhhhhHhhc-cccCCCceEEEECCCcc-eEEEEEccC
Confidence 4567899999999999865 99999999999999999876321 111111 11223468899999864 345566677
Q ss_pred CcEEEEeecC--CCC-------eeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCc
Q 036510 126 GNISVFTARA--DGG-------WDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGI 196 (288)
Q Consensus 126 ~~i~i~d~~~--~~~-------~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 196 (288)
++|++|-+.. ++. ++...+.+.|...+.++ +..+...++.|++.|..|.||+++ |+
T Consensus 155 ~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~i--------------GiA~~~k~imsas~dt~i~lw~lk-Gq 219 (420)
T KOG2096|consen 155 NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINI--------------GIAGNAKYIMSASLDTKICLWDLK-GQ 219 (420)
T ss_pred CEEEEEEeeecccCCCCcccccccccccchhcccceEEE--------------eecCCceEEEEecCCCcEEEEecC-Cc
Confidence 8999997642 221 11112333444444444 233345789999999999999998 42
Q ss_pred eeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcc-----cceEeeccccCeEEEEeecCCC
Q 036510 197 WKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQW-----EGKVLHDFKTPVYRVSWSLTGN 271 (288)
Q Consensus 197 ~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~-----~~~~~~~~~~~i~~~~~spdg~ 271 (288)
.+..+......-...+.||++ .+|++++.---+++|.+=-.++.. ..-.+++|++.|.+++|||+.+
T Consensus 220 ----~L~~idtnq~~n~~aavSP~G----RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~ 291 (420)
T KOG2096|consen 220 ----LLQSIDTNQSSNYDAAVSPDG----RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSST 291 (420)
T ss_pred ----eeeeeccccccccceeeCCCC----cEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcc
Confidence 233333333333456888984 789999998899999875332211 1123478889999999999999
Q ss_pred EEEEEeCCCcEEEeEc
Q 036510 272 ILAVADGNNNVTLWEE 287 (288)
Q Consensus 272 ~l~s~~~d~~v~~w~~ 287 (288)
++++.|.||+.||||+
T Consensus 292 r~vtvSkDG~wriwdt 307 (420)
T KOG2096|consen 292 RAVTVSKDGKWRIWDT 307 (420)
T ss_pred eeEEEecCCcEEEeec
Confidence 9999999999999995
No 138
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.87 E-value=5.6e-19 Score=150.41 Aligned_cols=235 Identities=14% Similarity=0.119 Sum_probs=153.7
Q ss_pred ceEEEEEcCCCCEE-EEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEE-EEeeCCCcEEEeecCCCC
Q 036510 13 TVHDVAMDYYGKRL-ATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSIL-ASCSFDGTVIIWKEGNSN 90 (288)
Q Consensus 13 ~v~~~~~s~~g~~l-~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~s~d~~v~iwd~~~~~ 90 (288)
.+.++.|+|+|+.+ ++++.++.+++||.... +.+..+..+.. +..++|+++ ++.+ ++++.|+.+++||+.+..
T Consensus 32 ~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~--~~~~~~~~~~~-~~~~~~~~~--g~~l~~~~~~~~~l~~~d~~~~~ 106 (300)
T TIGR03866 32 RPRGITLSKDGKLLYVCASDSDTIQVIDLATG--EVIGTLPSGPD-PELFALHPN--GKILYIANEDDNLVTVIDIETRK 106 (300)
T ss_pred CCCceEECCCCCEEEEEECCCCeEEEEECCCC--cEEEeccCCCC-ccEEEECCC--CCEEEEEcCCCCeEEEEECCCCe
Confidence 35679999999876 56778899999998543 44555554443 467888764 5555 566779999999997643
Q ss_pred ceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCC-cEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecc
Q 036510 91 EWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDG-NISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGS 169 (288)
Q Consensus 91 ~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~-~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~ 169 (288)
....+. +...+.+++|+|+ +.+++++..++ .+.+||.+...... ... .......+.|+|++
T Consensus 107 ---~~~~~~-~~~~~~~~~~~~d--g~~l~~~~~~~~~~~~~d~~~~~~~~--~~~--~~~~~~~~~~s~dg-------- 168 (300)
T TIGR03866 107 ---VLAEIP-VGVEPEGMAVSPD--GKIVVNTSETTNMAHFIDTKTYEIVD--NVL--VDQRPRFAEFTADG-------- 168 (300)
T ss_pred ---EEeEee-CCCCcceEEECCC--CCEEEEEecCCCeEEEEeCCCCeEEE--EEE--cCCCccEEEECCCC--------
Confidence 223333 2234688999998 55667676654 46677876542211 111 12235678899887
Q ss_pred cccCCCcee-EEeecCCcEEEEEEeCCceeeeeeecccc-----CCc--ceEEEEecCCCCCCCcE-EEEEeCCCcEEEE
Q 036510 170 GFLDPVQKL-CSGGCDNTVKVWKLYNGIWKMDCFPALQM-----HTD--WVRDVAWAPNLGLPKST-IASASEDGKVIIW 240 (288)
Q Consensus 170 ~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-----h~~--~V~~v~~sp~~~~~~~~-l~s~s~D~~i~iw 240 (288)
+.| +++..++.|++||+.++. ++..+.. +.. ....+.|+|++ ++ +++.+.++.+.+|
T Consensus 169 ------~~l~~~~~~~~~v~i~d~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~s~dg----~~~~~~~~~~~~i~v~ 234 (300)
T TIGR03866 169 ------KELWVSSEIGGTVSVIDVATRK----VIKKITFEIPGVHPEAVQPVGIKLTKDG----KTAFVALGPANRVAVV 234 (300)
T ss_pred ------CEEEEEcCCCCEEEEEEcCcce----eeeeeeecccccccccCCccceEECCCC----CEEEEEcCCCCeEEEE
Confidence 445 566678999999998763 2222111 111 23467899985 34 4555667789999
Q ss_pred EeecCCCcccceEeeccccCeEEEEeecCCCEEEEEe-CCCcEEEeEcC
Q 036510 241 TVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVAD-GNNNVTLWEEA 288 (288)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~-~d~~v~~w~~~ 288 (288)
|.+..+ . . ..+ .+...+.+++|+|+|++|++++ .+++|++||.+
T Consensus 235 d~~~~~-~-~-~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~ 279 (300)
T TIGR03866 235 DAKTYE-V-L-DYL-LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVA 279 (300)
T ss_pred ECCCCc-E-E-EEE-EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECC
Confidence 986421 1 1 111 2345788999999999998875 58999999953
No 139
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.87 E-value=1.6e-20 Score=153.03 Aligned_cols=263 Identities=18% Similarity=0.232 Sum_probs=180.8
Q ss_pred ccccceEEEEEcCC----CCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEe
Q 036510 9 GHEDTVHDVAMDYY----GKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIW 84 (288)
Q Consensus 9 ~h~~~v~~~~~s~~----g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iw 84 (288)
.|+..-+.++|+-+ ..+||.||.-|.|++.|+.. .++...+.+|..+|+.|.|-| ...++++|+|.|.+||+|
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~--~~~~~~~~ghG~sINeik~~p-~~~qlvls~SkD~svRlw 163 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVS--GQCSKNYRGHGGSINEIKFHP-DRPQLVLSASKDHSVRLW 163 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecch--hhhccceeccCccchhhhcCC-CCCcEEEEecCCceEEEE
Confidence 47777777777643 46899999999999999853 467888999999999999954 467899999999999999
Q ss_pred ecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCC
Q 036510 85 KEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPG 164 (288)
Q Consensus 85 d~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~ 164 (288)
++++..+.....-+.+|++.|.+++|+++ +.++++++.|-+|++|++...+-.... -.++.|+|+....
T Consensus 164 nI~~~~Cv~VfGG~egHrdeVLSvD~~~~--gd~i~ScGmDhslk~W~l~~~~f~~~l---------E~s~~~~~~~t~~ 232 (385)
T KOG1034|consen 164 NIQTDVCVAVFGGVEGHRDEVLSVDFSLD--GDRIASCGMDHSLKLWRLNVKEFKNKL---------ELSITYSPNKTTR 232 (385)
T ss_pred eccCCeEEEEecccccccCcEEEEEEcCC--CCeeeccCCcceEEEEecChhHHhhhh---------hhhcccCCCCccC
Confidence 99876643333335679999999999998 668999999999999998732211100 0112233322111
Q ss_pred cee-----------cccccC-------CCceeEEeecCCcEEEEEEe---CC-------ceeeeeeeccccCCcceEEEE
Q 036510 165 ALV-----------GSGFLD-------PVQKLCSGGCDNTVKVWKLY---NG-------IWKMDCFPALQMHTDWVRDVA 216 (288)
Q Consensus 165 ~~~-----------~~~~~~-------~~~~l~s~~~d~~i~iwd~~---~~-------~~~~~~~~~~~~h~~~V~~v~ 216 (288)
... .....+ -+.+++|-|.++.|..|..- +. ...-+.+..+.-....|+-+.
T Consensus 233 pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfir 312 (385)
T KOG1034|consen 233 PFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIR 312 (385)
T ss_pred cCCccccccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEE
Confidence 100 000000 13678899999999999761 11 000111222232333466777
Q ss_pred ecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeecc-ccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510 217 WAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDF-KTPVYRVSWSLTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 217 ~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~-~~~i~~~~~spdg~~l~s~~~d~~v~~w~~ 287 (288)
|+-|- ..++||.|..-|.|.+||++.......-++.+.- ++.|...+||-||..|+....|++|.=||.
T Consensus 313 f~~d~--~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 313 FAFDP--WQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred EeecH--HHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 76653 2478999999999999999865432222222222 356888999999999999999999999984
No 140
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.87 E-value=9.4e-20 Score=163.91 Aligned_cols=249 Identities=17% Similarity=0.294 Sum_probs=166.3
Q ss_pred ccc-cceEEEEEcCCCCE-EEEeeCCCcEEEEEeCCCCceee-EEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEee
Q 036510 9 GHE-DTVHDVAMDYYGKR-LATASSDYSIKIIGVGNNTSQHL-AKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK 85 (288)
Q Consensus 9 ~h~-~~v~~~~~s~~g~~-l~s~~~d~~i~lwd~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd 85 (288)
-|. +.|+.++|..||+. |++|+..|.+.+||++.. +.. .....|.++|....|-+. ..++++.+.|++.++|-
T Consensus 241 k~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~k--kl~~v~~nah~~sv~~~~fl~~--epVl~ta~~DnSlk~~v 316 (910)
T KOG1539|consen 241 KQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKK--KLINVTRNAHYGSVTGATFLPG--EPVLVTAGADNSLKVWV 316 (910)
T ss_pred EccccceeEEEeccCCCeeEEeccCCceEEEEEcCCC--eeeeeeeccccCCcccceecCC--CceEeeccCCCceeEEE
Confidence 464 89999999999955 666777799999999753 333 344589999999998753 57999999999999995
Q ss_pred cCCCC-ceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEee-------------------------------
Q 036510 86 EGNSN-EWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTA------------------------------- 133 (288)
Q Consensus 86 ~~~~~-~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~------------------------------- 133 (288)
..++. .....+...+|..|-.|++|.... +..+.+.+.|++++.+++
T Consensus 317 fD~~dg~pR~LR~R~GHs~Pp~~irfy~~~-g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~ 395 (910)
T KOG1539|consen 317 FDSGDGVPRLLRSRGGHSAPPSCIRFYGSQ-GHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKL 395 (910)
T ss_pred eeCCCCcchheeeccCCCCCchheeeeccC-cEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcC
Confidence 43221 112233345666666666665322 444445555555544433
Q ss_pred --------------------------------------------------------------------------------
Q 036510 134 -------------------------------------------------------------------------------- 133 (288)
Q Consensus 134 -------------------------------------------------------------------------------- 133 (288)
T Consensus 396 p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~f 475 (910)
T KOG1539|consen 396 PPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRF 475 (910)
T ss_pred CcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEE
Confidence
Q ss_pred --cCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCce--------------
Q 036510 134 --RADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIW-------------- 197 (288)
Q Consensus 134 --~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-------------- 197 (288)
+.+-....+.....|..+|+.++-.- -.+.++|++.+|-++.||..+...
T Consensus 476 NmQSGi~r~sf~~~~ah~~~V~gla~D~--------------~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv 541 (910)
T KOG1539|consen 476 NMQSGIHRKSFGDSPAHKGEVTGLAVDG--------------TNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIV 541 (910)
T ss_pred EcccCeeecccccCccccCceeEEEecC--------------CCceEEEccCcceEEEEecCCcceeeeeccCCCcceee
Confidence 11100000000112222222222211 125689999999999999754320
Q ss_pred -----------------------eeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEe
Q 036510 198 -----------------------KMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVL 254 (288)
Q Consensus 198 -----------------------~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~ 254 (288)
.++.+..+.||.+.|++++||||+ +.|++++.|++||+||+-.. ..+
T Consensus 542 ~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~Dg----rWlisasmD~tIr~wDlpt~------~lI 611 (910)
T KOG1539|consen 542 YHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDG----RWLISASMDSTIRTWDLPTG------TLI 611 (910)
T ss_pred eeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCC----cEEEEeecCCcEEEEeccCc------cee
Confidence 012344578999999999999985 78999999999999998643 333
Q ss_pred ec--cccCeEEEEeecCCCEEEEEeCC-CcEEEeE
Q 036510 255 HD--FKTPVYRVSWSLTGNILAVADGN-NNVTLWE 286 (288)
Q Consensus 255 ~~--~~~~i~~~~~spdg~~l~s~~~d-~~v~~w~ 286 (288)
.. ...+++++.|||+|.+||++..| .-|.+|-
T Consensus 612 D~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 612 DGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred eeEecCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence 33 35789999999999999999998 6799995
No 141
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.87 E-value=1.5e-19 Score=159.44 Aligned_cols=242 Identities=20% Similarity=0.252 Sum_probs=173.2
Q ss_pred ceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCce
Q 036510 13 TVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEW 92 (288)
Q Consensus 13 ~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~ 92 (288)
-|+.++|.|||+.|+-+.. ..+.+||.+. +..+.++.||++.|++++|+++ |+.|+||+.|+.|.+|.....+.
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~nd--G~llqtLKgHKDtVycVAys~d--GkrFASG~aDK~VI~W~~klEG~- 87 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSD--GTLLQPLKGHKDTVYCVAYAKD--GKRFASGSADKSVIIWTSKLEGI- 87 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCC--cccccccccccceEEEEEEccC--CceeccCCCceeEEEecccccce-
Confidence 7889999999988776554 4678899854 4679999999999999999976 99999999999999997654331
Q ss_pred EEeEEeecCCCceeEEEeccC-------------------------------------CCCeEEEEEeCCCcEEEEeecC
Q 036510 93 IKDHVFEDHKSSVNSIDWAPH-------------------------------------ELGLCLACGSSDGNISVFTARA 135 (288)
Q Consensus 93 ~~~~~~~~h~~~v~~l~~~p~-------------------------------------~~~~~l~sg~~d~~i~i~d~~~ 135 (288)
. ...|.+.|.|+.|+|- ++|.+++.|-.+|+|.|-+-..
T Consensus 88 --L--kYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~g 163 (1081)
T KOG1538|consen 88 --L--KYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNG 163 (1081)
T ss_pred --e--eeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCC
Confidence 1 1246667777766661 1257788888888887753221
Q ss_pred CCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEE
Q 036510 136 DGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDV 215 (288)
Q Consensus 136 ~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v 215 (288)
..-.......+.+.+|.+|.|+|....|.. ..++...+..++.++.+...+- .--..+. .. =.|+
T Consensus 164 -Eek~~I~Rpgg~Nspiwsi~~~p~sg~G~~---------di~aV~DW~qTLSFy~LsG~~I--gk~r~L~-Fd--P~Ci 228 (1081)
T KOG1538|consen 164 -EEKVKIERPGGSNSPIWSICWNPSSGEGRN---------DILAVADWGQTLSFYQLSGKQI--GKDRALN-FD--PCCI 228 (1081)
T ss_pred -CcceEEeCCCCCCCCceEEEecCCCCCCcc---------ceEEEEeccceeEEEEecceee--cccccCC-CC--chhh
Confidence 111111222356778999999998765442 4577788888888888754210 0011111 11 2578
Q ss_pred EecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510 216 AWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 216 ~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~ 287 (288)
++.|++ .+++.|+.|+.+++|.-. +. ...++.++..+|+.++..|+++..+.|+-||||-.|++
T Consensus 229 sYf~NG----Ey~LiGGsdk~L~~fTR~---Gv-rLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 229 SYFTNG----EYILLGGSDKQLSLFTRD---GV-RLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred eeccCC----cEEEEccCCCceEEEeec---Ce-EEeeccccceeEEEEEEccCCceEEEEEccCeeehhhh
Confidence 888884 689999999999999633 11 22334556789999999999999999999999987764
No 142
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=1e-19 Score=158.48 Aligned_cols=264 Identities=21% Similarity=0.265 Sum_probs=179.6
Q ss_pred cccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEee
Q 036510 6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK 85 (288)
Q Consensus 6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd 85 (288)
++.||++.|.+|+..|.|.+|+||+.||++|+|.+.. +.++.+..- .+.|.+++|++..+-.+|| ++.+..+-|-+
T Consensus 395 vyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~T--gRcvr~~~~-d~~I~~vaw~P~~~~~vLA-vA~~~~~~ivn 470 (733)
T KOG0650|consen 395 VYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIAT--GRCVRTVQF-DSEIRSVAWNPLSDLCVLA-VAVGECVLIVN 470 (733)
T ss_pred eEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeec--ceEEEEEee-cceeEEEEecCCCCceeEE-EEecCceEEeC
Confidence 4569999999999999999999999999999999954 466666542 4579999999765433444 33333344433
Q ss_pred cCCCC-------------------------ceE---------EeEEeecCCCceeEEEeccCCCCeEEEEEeCC---CcE
Q 036510 86 EGNSN-------------------------EWI---------KDHVFEDHKSSVNSIDWAPHELGLCLACGSSD---GNI 128 (288)
Q Consensus 86 ~~~~~-------------------------~~~---------~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d---~~i 128 (288)
..-+. .|. -+++.-.|..+|..+.||.. |.+|++...+ ..|
T Consensus 471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrk--GDYlatV~~~~~~~~V 548 (733)
T KOG0650|consen 471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRK--GDYLATVMPDSGNKSV 548 (733)
T ss_pred ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecC--CceEEEeccCCCcceE
Confidence 21000 010 01122247789999999987 6777776443 467
Q ss_pred EEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceec---------------------------ccccCCCceeEEe
Q 036510 129 SVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVG---------------------------SGFLDPVQKLCSG 181 (288)
Q Consensus 129 ~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~---------------------------~~~~~~~~~l~s~ 181 (288)
.|+++.......+++. -.+.+.++.|.|..+..++.. +...+.+..|+.|
T Consensus 549 liHQLSK~~sQ~PF~k---skG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~g 625 (733)
T KOG0650|consen 549 LIHQLSKRKSQSPFRK---SKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILG 625 (733)
T ss_pred EEEecccccccCchhh---cCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEe
Confidence 7888765432222222 223467778887764322110 1112446678889
Q ss_pred ecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCc------ccceEee
Q 036510 182 GCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQ------WEGKVLH 255 (288)
Q Consensus 182 ~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~------~~~~~~~ 255 (288)
+.|+.++.+|+.-+. +..+.+.-|...|++|+|++.. -++++|+.|+++.|+.-.--.+. ...+.+.
T Consensus 626 s~d~k~~WfDldlss---kPyk~lr~H~~avr~Va~H~ry----PLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~ 698 (733)
T KOG0650|consen 626 SYDKKMCWFDLDLSS---KPYKTLRLHEKAVRSVAFHKRY----PLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLR 698 (733)
T ss_pred cCCCeeEEEEcccCc---chhHHhhhhhhhhhhhhhcccc----ceeeeecCCCcEEEEeeeeehhhhcCCceEeeeecc
Confidence 999999999986432 4567788899999999999964 47999999999999865432211 1112234
Q ss_pred cccc----CeEEEEeecCCCEEEEEeCCCcEEEe
Q 036510 256 DFKT----PVYRVSWSLTGNILAVADGNNNVTLW 285 (288)
Q Consensus 256 ~~~~----~i~~~~~spdg~~l~s~~~d~~v~~w 285 (288)
+|.. .|..+.|||....|.++++||+|+||
T Consensus 699 gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 699 GHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred CceeecccceEeecccCCCceEEecCCCceEEee
Confidence 4543 38899999999999999999999998
No 143
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=4.4e-20 Score=149.67 Aligned_cols=203 Identities=18% Similarity=0.267 Sum_probs=151.9
Q ss_pred ccccccceEEEEEcCCCC--EEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEe
Q 036510 7 ETGHEDTVHDVAMDYYGK--RLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIW 84 (288)
Q Consensus 7 ~~~h~~~v~~~~~s~~g~--~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iw 84 (288)
+..|.+.|++++|.+.-. .|+||+.||.|.+|++ +...++.++.+|++.|+.++..| .+.+-++.+.|+.+++|
T Consensus 79 ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~--~~W~~~~slK~H~~~Vt~lsiHP--S~KLALsVg~D~~lr~W 154 (362)
T KOG0294|consen 79 LLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRV--GSWELLKSLKAHKGQVTDLSIHP--SGKLALSVGGDQVLRTW 154 (362)
T ss_pred eeccccceEEEEecCCcchhheeeecCCCcEEEEEc--CCeEEeeeecccccccceeEecC--CCceEEEEcCCceeeee
Confidence 346999999999998654 8999999999999998 45789999999999999999854 37888999999999999
Q ss_pred ecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCC
Q 036510 85 KEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPG 164 (288)
Q Consensus 85 d~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~ 164 (288)
++-.+..-.. ..+ .....-+.|+|. +.+++.++. +.|-+|.+....-+.. -..+..+.++.|-.
T Consensus 155 NLV~Gr~a~v-~~L---~~~at~v~w~~~--Gd~F~v~~~-~~i~i~q~d~A~v~~~----i~~~~r~l~~~~l~----- 218 (362)
T KOG0294|consen 155 NLVRGRVAFV-LNL---KNKATLVSWSPQ--GDHFVVSGR-NKIDIYQLDNASVFRE----IENPKRILCATFLD----- 218 (362)
T ss_pred hhhcCcccee-ecc---CCcceeeEEcCC--CCEEEEEec-cEEEEEecccHhHhhh----hhccccceeeeecC-----
Confidence 9876542211 112 223455999987 555665655 4578887754321110 11223455665543
Q ss_pred ceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeec
Q 036510 165 ALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAR 244 (288)
Q Consensus 165 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~ 244 (288)
+..|.+|+.|+.|++||.... .+...+.+|..+|.++.+-.+- ...+|+|+|+||.|++||++.
T Consensus 219 ----------~~~L~vG~d~~~i~~~D~ds~----~~~~~~~AH~~RVK~i~~~~~~--~~~~lvTaSSDG~I~vWd~~~ 282 (362)
T KOG0294|consen 219 ----------GSELLVGGDNEWISLKDTDSD----TPLTEFLAHENRVKDIASYTNP--EHEYLVTASSDGFIKVWDIDM 282 (362)
T ss_pred ----------CceEEEecCCceEEEeccCCC----ccceeeecchhheeeeEEEecC--CceEEEEeccCceEEEEEccc
Confidence 267999999999999998764 4667889999999999854431 146999999999999999986
Q ss_pred C
Q 036510 245 E 245 (288)
Q Consensus 245 ~ 245 (288)
.
T Consensus 283 ~ 283 (362)
T KOG0294|consen 283 E 283 (362)
T ss_pred c
Confidence 4
No 144
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.86 E-value=2.7e-20 Score=157.46 Aligned_cols=218 Identities=16% Similarity=0.204 Sum_probs=155.8
Q ss_pred eEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCC-CceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCC
Q 036510 48 LAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNS-NEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDG 126 (288)
Q Consensus 48 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~-~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~ 126 (288)
...+.-|...|.+++|.|...-.+++.|+.-|+|-+||++.. ........+..|..+|.++.|+|.+.. .+.+.+.||
T Consensus 179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s-~i~ssSyDG 257 (498)
T KOG4328|consen 179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTS-QIYSSSYDG 257 (498)
T ss_pred cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChh-heeeeccCc
Confidence 344556889999999965433378899999999999999532 222234456789999999999998644 477889999
Q ss_pred cEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccc
Q 036510 127 NISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQ 206 (288)
Q Consensus 127 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 206 (288)
+|++-|+.... ...+.....-...+.+++|+.+. ..++.+..=|...+||.+.+. .....+.
T Consensus 258 tiR~~D~~~~i-~e~v~s~~~d~~~fs~~d~~~e~--------------~~vl~~~~~G~f~~iD~R~~~---s~~~~~~ 319 (498)
T KOG4328|consen 258 TIRLQDFEGNI-SEEVLSLDTDNIWFSSLDFSAES--------------RSVLFGDNVGNFNVIDLRTDG---SEYENLR 319 (498)
T ss_pred eeeeeeecchh-hHHHhhcCccceeeeeccccCCC--------------ccEEEeecccceEEEEeecCC---ccchhhh
Confidence 99999986531 11111111111223444444433 445555555589999999863 2244567
Q ss_pred cCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCccc-ceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEe
Q 036510 207 MHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWE-GKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLW 285 (288)
Q Consensus 207 ~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~-~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w 285 (288)
.|...|++|+++|.. +.+|||+|.|++.+|||++....+.+ ....-.|...|.++.|||+|-.|++.+.|..||||
T Consensus 320 lh~kKI~sv~~NP~~---p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~ 396 (498)
T KOG4328|consen 320 LHKKKITSVALNPVC---PWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVF 396 (498)
T ss_pred hhhcccceeecCCCC---chheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEe
Confidence 788899999999974 67899999999999999986533221 11123567789999999998889999999999999
Q ss_pred Ec
Q 036510 286 EE 287 (288)
Q Consensus 286 ~~ 287 (288)
|-
T Consensus 397 ds 398 (498)
T KOG4328|consen 397 DS 398 (498)
T ss_pred ec
Confidence 84
No 145
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.86 E-value=2.7e-20 Score=159.01 Aligned_cols=243 Identities=19% Similarity=0.268 Sum_probs=178.0
Q ss_pred cceEEEEEcCCCCE-EEEeeCCCcEEEEEeCCCC--ceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCC
Q 036510 12 DTVHDVAMDYYGKR-LATASSDYSIKIIGVGNNT--SQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGN 88 (288)
Q Consensus 12 ~~v~~~~~s~~g~~-l~s~~~d~~i~lwd~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~ 88 (288)
-.+.+++|+....+ +++.+.|+.+++|.-.++. .+.+..+.+.... |++-.. ...++++|+..+.|+|||++.
T Consensus 35 pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~--Cv~~~s--~S~y~~sgG~~~~Vkiwdl~~ 110 (673)
T KOG4378|consen 35 PGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAF--CVACAS--QSLYEISGGQSGCVKIWDLRA 110 (673)
T ss_pred CcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHH--HHhhhh--cceeeeccCcCceeeehhhHH
Confidence 45888899876643 3445678999999765432 3344445444332 222211 247999999999999999974
Q ss_pred CCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceec
Q 036510 89 SNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVG 168 (288)
Q Consensus 89 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~ 168 (288)
.. ..+.++.|...|+++.++-. .-++|+++..|-|.|..+.++....++.. +....|.-+.|+|...
T Consensus 111 kl---~hr~lkdh~stvt~v~YN~~--DeyiAsvs~gGdiiih~~~t~~~tt~f~~--~sgqsvRll~ys~skr------ 177 (673)
T KOG4378|consen 111 KL---IHRFLKDHQSTVTYVDYNNT--DEYIASVSDGGDIIIHGTKTKQKTTTFTI--DSGQSVRLLRYSPSKR------ 177 (673)
T ss_pred HH---HhhhccCCcceeEEEEecCC--cceeEEeccCCcEEEEecccCccccceec--CCCCeEEEeecccccc------
Confidence 33 23457889999999999754 45799999999999998877644333221 2223456788888763
Q ss_pred ccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCc
Q 036510 169 SGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQ 248 (288)
Q Consensus 169 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~ 248 (288)
.+|.+++.+|.|.+||+.... ...+-...|..+...|+|+|.. +.+||+.+.|+.|.+||+....
T Consensus 178 -------~lL~~asd~G~VtlwDv~g~s---p~~~~~~~HsAP~~gicfspsn---e~l~vsVG~Dkki~~yD~~s~~-- 242 (673)
T KOG4378|consen 178 -------FLLSIASDKGAVTLWDVQGMS---PIFHASEAHSAPCRGICFSPSN---EALLVSVGYDKKINIYDIRSQA-- 242 (673)
T ss_pred -------eeeEeeccCCeEEEEeccCCC---cccchhhhccCCcCcceecCCc---cceEEEecccceEEEeeccccc--
Confidence 578899999999999986521 2233457899999999999974 5789999999999999998542
Q ss_pred ccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEcC
Q 036510 249 WEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEEA 288 (288)
Q Consensus 249 ~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~~ 288 (288)
....+. +..|...++|+|+|.+|+.|...|.|..||++
T Consensus 243 s~~~l~--y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R 280 (673)
T KOG4378|consen 243 STDRLT--YSHPLSTVAFSECGTYLCAGNSKGELIAYDMR 280 (673)
T ss_pred ccceee--ecCCcceeeecCCceEEEeecCCceEEEEecc
Confidence 122332 34688999999999999999999999999974
No 146
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=7.4e-20 Score=148.46 Aligned_cols=242 Identities=14% Similarity=0.228 Sum_probs=164.9
Q ss_pred eEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceE
Q 036510 14 VHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWI 93 (288)
Q Consensus 14 v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~ 93 (288)
..++.|++-|.+||+|+.||.|-|||.... ..-+.+.+|..+|.+++||++ |+.|+|+|.|..+++||+..+..
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~--~iar~lsaH~~pi~sl~WS~d--gr~LltsS~D~si~lwDl~~gs~-- 99 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTF--RIARMLSAHVRPITSLCWSRD--GRKLLTSSRDWSIKLWDLLKGSP-- 99 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEcccc--chhhhhhccccceeEEEecCC--CCEeeeecCCceeEEEeccCCCc--
Confidence 567899999999999999999999998543 345668999999999999976 99999999999999999988763
Q ss_pred EeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeecc-CCCCeeEEEeCCCCCCCceeccccc
Q 036510 94 KDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQA-HPVGVTSVSWAPSTAPGALVGSGFL 172 (288)
Q Consensus 94 ~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~-~~~~v~~i~~~p~~~~~~~~~~~~~ 172 (288)
.+.+ ....+|+.+.|||...+..+++--... -.+-++..+.+.....-..+ -+..-.+..|.+.
T Consensus 100 -l~ri-rf~spv~~~q~hp~k~n~~va~~~~~s-p~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~------------ 164 (405)
T KOG1273|consen 100 -LKRI-RFDSPVWGAQWHPRKRNKCVATIMEES-PVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRR------------ 164 (405)
T ss_pred -eeEE-EccCccceeeeccccCCeEEEEEecCC-cEEEEecCCceeeccCCCccccccccccccccCC------------
Confidence 2222 246799999999986555555432221 22222221110000000000 0000111123332
Q ss_pred CCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCC-cceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCc---
Q 036510 173 DPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHT-DWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQ--- 248 (288)
Q Consensus 173 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~-~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~--- 248 (288)
++++++|...|.+.++|..+- +++..++.-. ..|..+.|+.. +..|+.-+.|+.||.|+++.....
T Consensus 165 --g~yIitGtsKGkllv~~a~t~----e~vas~rits~~~IK~I~~s~~----g~~liiNtsDRvIR~ye~~di~~~~r~ 234 (405)
T KOG1273|consen 165 --GKYIITGTSKGKLLVYDAETL----ECVASFRITSVQAIKQIIVSRK----GRFLIINTSDRVIRTYEISDIDDEGRD 234 (405)
T ss_pred --CCEEEEecCcceEEEEecchh----eeeeeeeechheeeeEEEEecc----CcEEEEecCCceEEEEehhhhcccCcc
Confidence 478999999999999998763 6777665444 66888898876 468999999999999998843211
Q ss_pred ccceEeeccccCe-----EEEEeecCCCEEEEEeC-CCcEEEeE
Q 036510 249 WEGKVLHDFKTPV-----YRVSWSLTGNILAVADG-NNNVTLWE 286 (288)
Q Consensus 249 ~~~~~~~~~~~~i-----~~~~~spdg~~l~s~~~-d~~v~~w~ 286 (288)
.+.++.+++...| ..++||.||.++..|+. --.++||.
T Consensus 235 ~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE 278 (405)
T KOG1273|consen 235 GEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWE 278 (405)
T ss_pred CCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEe
Confidence 1223334443333 57899999999887764 34688886
No 147
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.86 E-value=1.3e-19 Score=145.49 Aligned_cols=254 Identities=18% Similarity=0.265 Sum_probs=179.9
Q ss_pred cccccceEEEEEcCCC--C--EEEEeeCCCcEEEEEeCCC--CceeeEEE-----eccccCeEEEEecCCCCCCEEEEee
Q 036510 8 TGHEDTVHDVAMDYYG--K--RLATASSDYSIKIIGVGNN--TSQHLAKL-----SGHKGAVWEVAWAHPKFGSILASCS 76 (288)
Q Consensus 8 ~~h~~~v~~~~~s~~g--~--~l~s~~~d~~i~lwd~~~~--~~~~~~~~-----~~h~~~v~~~~~~~~~~~~~l~s~s 76 (288)
+.|.-+++.+.|.|+. . .|++.+.| .+|||.+..+ ..++...+ ..|..++++..|.. .+.+++.++|
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~D-~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne-~dp~~igtSS 170 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSSD-FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNE-VDPNLIGTSS 170 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhcccC-eEEEEeccCcCCceehhhhhccCcccccCCccccccccc-CCcceeEeec
Confidence 4788899999999874 2 24434444 7899988532 11211112 34667899999974 3678999999
Q ss_pred CCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccC--CCCeeE
Q 036510 77 FDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAH--PVGVTS 154 (288)
Q Consensus 77 ~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~--~~~v~~ 154 (288)
.|-+..|||+..+-.......+-.|.++|..++|.... ..++|+.+.||.+|+||+|.-.+ ...+++.- ..+..+
T Consensus 171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s-~~~FASvgaDGSvRmFDLR~leH--STIIYE~p~~~~pLlR 247 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGS-RDVFASVGADGSVRMFDLRSLEH--STIIYEDPSPSTPLLR 247 (364)
T ss_pred ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCc-cceEEEecCCCcEEEEEeccccc--ceEEecCCCCCCccee
Confidence 99999999998752211223456799999999999853 56799999999999999997543 12233321 345778
Q ss_pred EEeCCCCCCCceecccccCCCceeEEeecCC-cEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeC
Q 036510 155 VSWAPSTAPGALVGSGFLDPVQKLCSGGCDN-TVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASE 233 (288)
Q Consensus 155 i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~ 233 (288)
++|++..+ ++++|-..|. .|.|.|++... ..+..+++|...|+.++|.|.+ .+.|+|+++
T Consensus 248 LswnkqDp-------------nymATf~~dS~~V~iLDiR~P~---tpva~L~~H~a~VNgIaWaPhS---~~hictaGD 308 (364)
T KOG0290|consen 248 LSWNKQDP-------------NYMATFAMDSNKVVILDIRVPC---TPVARLRNHQASVNGIAWAPHS---SSHICTAGD 308 (364)
T ss_pred eccCcCCc-------------hHHhhhhcCCceEEEEEecCCC---cceehhhcCcccccceEecCCC---CceeeecCC
Confidence 99998875 6677665555 48899998753 3466789999999999999986 578999999
Q ss_pred CCcEEEEEeecCCCcc--cceEeeccccCeEEEEeecC-CCEEEEEeCCCcEEEeE
Q 036510 234 DGKVIIWTVAREGDQW--EGKVLHDFKTPVYRVSWSLT-GNILAVADGNNNVTLWE 286 (288)
Q Consensus 234 D~~i~iw~~~~~~~~~--~~~~~~~~~~~i~~~~~spd-g~~l~s~~~d~~v~~w~ 286 (288)
|-.+-|||+....... .-.+....+..|+-+.|+|. +..|+.+ .++++.+.+
T Consensus 309 D~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~-~~kkleiLR 363 (364)
T KOG0290|consen 309 DCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAIC-FGKKLEILR 363 (364)
T ss_pred cceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEE-ecCeeeEEe
Confidence 9999999998653210 11112233467999999975 5677766 446665543
No 148
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.86 E-value=4.4e-20 Score=150.45 Aligned_cols=258 Identities=18% Similarity=0.350 Sum_probs=189.9
Q ss_pred cccccccceEEEEEcC----CCCEEEEeeCCCcEEEEEeCCCCc-eeeEEEe--ccccCeEEEEecCCCC--CCEEEEee
Q 036510 6 IETGHEDTVHDVAMDY----YGKRLATASSDYSIKIIGVGNNTS-QHLAKLS--GHKGAVWEVAWAHPKF--GSILASCS 76 (288)
Q Consensus 6 ~~~~h~~~v~~~~~s~----~g~~l~s~~~d~~i~lwd~~~~~~-~~~~~~~--~h~~~v~~~~~~~~~~--~~~l~s~s 76 (288)
+..+|..++++++|++ +...+++......+.+|+.....+ +.++++. .|....+.++|+-+.. ..++|.++
T Consensus 33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G 112 (385)
T KOG1034|consen 33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG 112 (385)
T ss_pred hhccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec
Confidence 4557899999999985 233444444455788898754322 3444443 3778899999986532 45788889
Q ss_pred CCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEE
Q 036510 77 FDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVS 156 (288)
Q Consensus 77 ~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~ 156 (288)
.-|.|+|.|+.... ....+.+|...|+.+.++|+. ..++++++.|..|++|+++++.....+.-.++|...|.+++
T Consensus 113 ~~GvIrVid~~~~~---~~~~~~ghG~sINeik~~p~~-~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD 188 (385)
T KOG1034|consen 113 YLGVIRVIDVVSGQ---CSKNYRGHGGSINEIKFHPDR-PQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVD 188 (385)
T ss_pred ceeEEEEEecchhh---hccceeccCccchhhhcCCCC-CcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEE
Confidence 99999999987654 334566899999999999986 56899999999999999998766656666789999999999
Q ss_pred eCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCcee--e-------------------eeee---ccccCCcce
Q 036510 157 WAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWK--M-------------------DCFP---ALQMHTDWV 212 (288)
Q Consensus 157 ~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~--~-------------------~~~~---~~~~h~~~V 212 (288)
|++++ .+++|+|.|.++++|++...+.. + ...+ +-..|+++|
T Consensus 189 ~~~~g--------------d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyV 254 (385)
T KOG1034|consen 189 FSLDG--------------DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYV 254 (385)
T ss_pred EcCCC--------------CeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchH
Confidence 99987 78999999999999999632110 0 1111 346899999
Q ss_pred EEEEecCCCCCCCcEEEEEeCCCcEEEEEee-cCCC-----c-c-cceEeecc---ccCeEEE--EeecCCCEEEEEeCC
Q 036510 213 RDVAWAPNLGLPKSTIASASEDGKVIIWTVA-REGD-----Q-W-EGKVLHDF---KTPVYRV--SWSLTGNILAVADGN 279 (288)
Q Consensus 213 ~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~-~~~~-----~-~-~~~~~~~~---~~~i~~~--~~spdg~~l~s~~~d 279 (288)
.||+|-- .+++|-|-++.|..|.+- ..+. + . ....+..+ ...|+-+ +|.|-++.||.|..-
T Consensus 255 DCvrw~g------d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~ 328 (385)
T KOG1034|consen 255 DCVRWFG------DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQS 328 (385)
T ss_pred HHHHHHh------hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCC
Confidence 9999975 479999999999999882 2111 1 1 11222222 1335444 566778999999999
Q ss_pred CcEEEeEc
Q 036510 280 NNVTLWEE 287 (288)
Q Consensus 280 ~~v~~w~~ 287 (288)
|+|.+||+
T Consensus 329 g~v~vwdL 336 (385)
T KOG1034|consen 329 GKVYVWDL 336 (385)
T ss_pred CcEEEEEC
Confidence 99999996
No 149
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1.4e-18 Score=153.30 Aligned_cols=243 Identities=21% Similarity=0.285 Sum_probs=181.0
Q ss_pred cceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccc-cCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCC
Q 036510 12 DTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHK-GAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSN 90 (288)
Q Consensus 12 ~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~ 90 (288)
.+|.+++++.+.+.||.+-.||+|.+|++.. ..-+...+.++. ..|-+++|+ ++..|.|.+.+|+|.-||+.+.+
T Consensus 26 s~I~slA~s~kS~~lAvsRt~g~IEiwN~~~-~w~~~~vi~g~~drsIE~L~W~---e~~RLFS~g~sg~i~EwDl~~lk 101 (691)
T KOG2048|consen 26 SEIVSLAYSHKSNQLAVSRTDGNIEIWNLSN-NWFLEPVIHGPEDRSIESLAWA---EGGRLFSSGLSGSITEWDLHTLK 101 (691)
T ss_pred cceEEEEEeccCCceeeeccCCcEEEEccCC-CceeeEEEecCCCCceeeEEEc---cCCeEEeecCCceEEEEecccCc
Confidence 5789999999999999999999999999864 334445555554 678999997 27789999999999999998765
Q ss_pred ceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceeccc
Q 036510 91 EWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSG 170 (288)
Q Consensus 91 ~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~ 170 (288)
....+....+.|++++.+|. +..++.|+.||.+..++...+. +...+.+.--+..+.+++|+|++
T Consensus 102 ---~~~~~d~~gg~IWsiai~p~--~~~l~IgcddGvl~~~s~~p~~-I~~~r~l~rq~sRvLslsw~~~~--------- 166 (691)
T KOG2048|consen 102 ---QKYNIDSNGGAIWSIAINPE--NTILAIGCDDGVLYDFSIGPDK-ITYKRSLMRQKSRVLSLSWNPTG--------- 166 (691)
T ss_pred ---eeEEecCCCcceeEEEeCCc--cceEEeecCCceEEEEecCCce-EEEEeecccccceEEEEEecCCc---------
Confidence 33344556789999999997 4668889999977666665432 22122222335779999999987
Q ss_pred ccCCCceeEEeecCCcEEEEEEeCCceeee---eeecccc-CCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCC
Q 036510 171 FLDPVQKLCSGGCDNTVKVWKLYNGIWKMD---CFPALQM-HTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREG 246 (288)
Q Consensus 171 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~---~~~~~~~-h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~ 246 (288)
..+++|+.|+.|++||...+....- .+..+.. -.--|++|.|-.+ .+||+|-+-|+|++||.....
T Consensus 167 -----~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-----~tI~sgDS~G~V~FWd~~~gT 236 (691)
T KOG2048|consen 167 -----TKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-----STIASGDSAGTVTFWDSIFGT 236 (691)
T ss_pred -----cEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-----CcEEEecCCceEEEEcccCcc
Confidence 6799999999999999988742210 0111111 2224888888754 589999999999999976421
Q ss_pred CcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510 247 DQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE 286 (288)
Q Consensus 247 ~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~ 286 (288)
..+....|.+.|.+++-.+++.++.+++.|++|.-+.
T Consensus 237 ---LiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~ 273 (691)
T KOG2048|consen 237 ---LIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYS 273 (691)
T ss_pred ---hhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEE
Confidence 1122334567899999999999999999999987665
No 150
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.85 E-value=3.7e-20 Score=162.30 Aligned_cols=105 Identities=19% Similarity=0.363 Sum_probs=86.9
Q ss_pred ceeEEeecCCcEEEEEEeCCc---eeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccce
Q 036510 176 QKLCSGGCDNTVKVWKLYNGI---WKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGK 252 (288)
Q Consensus 176 ~~l~s~~~d~~i~iwd~~~~~---~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~ 252 (288)
..|+.++.|+.|+||.+..+. ...+....+.+|.+.|.++.|+|-- ...|++++.|.+|++||++.... ..
T Consensus 641 ~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLA---advLa~asyd~Ti~lWDl~~~~~---~~ 714 (1012)
T KOG1445|consen 641 ERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLA---ADVLAVASYDSTIELWDLANAKL---YS 714 (1012)
T ss_pred HHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchh---hhHhhhhhccceeeeeehhhhhh---hh
Confidence 479999999999999986531 1122344678999999999999953 35799999999999999987543 24
Q ss_pred EeeccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510 253 VLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE 286 (288)
Q Consensus 253 ~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~ 286 (288)
.+.+|...|.+++|||||+++|+.+.||+|+||+
T Consensus 715 ~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~ 748 (1012)
T KOG1445|consen 715 RLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYE 748 (1012)
T ss_pred eeccCcCceeEEEECCCCcceeeeecCceEEEeC
Confidence 4678889999999999999999999999999997
No 151
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=7.3e-19 Score=148.97 Aligned_cols=246 Identities=16% Similarity=0.200 Sum_probs=178.7
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCC-EEEEeeCCCcEEEeecCCC
Q 036510 11 EDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGS-ILASCSFDGTVIIWKEGNS 89 (288)
Q Consensus 11 ~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~-~l~s~s~d~~v~iwd~~~~ 89 (288)
.++|++++|.|...+|++|+.|++++||-+++...+.++.+.--.-+|...+|.+. |. .+++++.-.....||+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~--G~~~i~~s~rrky~ysyDle~a 290 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPN--GHSVIFTSGRRKYLYSYDLETA 290 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCC--CceEEEecccceEEEEeecccc
Confidence 68999999999999999999999999999987766677777766788999999764 66 8999999999999999765
Q ss_pred CceEEeEEeecCC-CceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceec
Q 036510 90 NEWIKDHVFEDHK-SSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVG 168 (288)
Q Consensus 90 ~~~~~~~~~~~h~-~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~ 168 (288)
+. .+.+...++. ..+....++|+ +.+++..+..|.|.+....++.-+.... -++.|..+.|+.++
T Consensus 291 k~-~k~~~~~g~e~~~~e~FeVShd--~~fia~~G~~G~I~lLhakT~eli~s~K----ieG~v~~~~fsSds------- 356 (514)
T KOG2055|consen 291 KV-TKLKPPYGVEEKSMERFEVSHD--SNFIAIAGNNGHIHLLHAKTKELITSFK----IEGVVSDFTFSSDS------- 356 (514)
T ss_pred cc-ccccCCCCcccchhheeEecCC--CCeEEEcccCceEEeehhhhhhhhheee----eccEEeeEEEecCC-------
Confidence 42 2223333333 34556677887 5578888899999987666553322222 23468889998776
Q ss_pred ccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCc-ceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCC-
Q 036510 169 SGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTD-WVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREG- 246 (288)
Q Consensus 169 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~-~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~- 246 (288)
..|+.++.+|.|.+||++.. .+++.+..... .=.+++.|++ +.+||+||.-|.|.|||.+...
T Consensus 357 -------k~l~~~~~~GeV~v~nl~~~----~~~~rf~D~G~v~gts~~~S~n----g~ylA~GS~~GiVNIYd~~s~~~ 421 (514)
T KOG2055|consen 357 -------KELLASGGTGEVYVWNLRQN----SCLHRFVDDGSVHGTSLCISLN----GSYLATGSDSGIVNIYDGNSCFA 421 (514)
T ss_pred -------cEEEEEcCCceEEEEecCCc----ceEEEEeecCccceeeeeecCC----CceEEeccCcceEEEeccchhhc
Confidence 56777778899999999875 34444321111 1255666666 4799999999999999965421
Q ss_pred ----Cc-------------------------------ccceEeec-----cc---------cCeEEEEeecCCCEEEEEe
Q 036510 247 ----DQ-------------------------------WEGKVLHD-----FK---------TPVYRVSWSLTGNILAVAD 277 (288)
Q Consensus 247 ----~~-------------------------------~~~~~~~~-----~~---------~~i~~~~~spdg~~l~s~~ 277 (288)
.+ ...+++|- |. +.|++++|||.|.++|.|-
T Consensus 422 s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGN 501 (514)
T KOG2055|consen 422 STNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGN 501 (514)
T ss_pred cCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeec
Confidence 00 01112221 11 2589999999999999999
Q ss_pred CCCcEEEeEc
Q 036510 278 GNNNVTLWEE 287 (288)
Q Consensus 278 ~d~~v~~w~~ 287 (288)
.+|.|+||++
T Consensus 502 e~grv~l~kL 511 (514)
T KOG2055|consen 502 EAGRVHLFKL 511 (514)
T ss_pred CCCceeeEee
Confidence 9999999986
No 152
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.84 E-value=1.7e-19 Score=143.06 Aligned_cols=257 Identities=18% Similarity=0.226 Sum_probs=180.4
Q ss_pred CCccccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEe-ccccCeEEEEecCCCCCCEEEEeeCCCcE
Q 036510 3 PQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLS-GHKGAVWEVAWAHPKFGSILASCSFDGTV 81 (288)
Q Consensus 3 ~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~d~~v 81 (288)
|+..+.+|...|+++.|..++ +|.+|..-|.|++|++...+. +..+. .|...|+.+.--+ +..|.+-+.|..+
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~-rL~sg~~~G~V~~w~lqt~r~--~~~~r~~g~~~it~lq~~p---~d~l~tqgRd~~L 79 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANE-RLMSGLSVGIVKMWVLQTERD--LPLIRLFGRLFITNLQSIP---NDSLDTQGRDPLL 79 (323)
T ss_pred CeeEeccccchheehhhccch-hhhcccccceEEEEEeecCcc--chhhhhhccceeeceeecC---CcchhhcCCCceE
Confidence 566788999999999999877 499999999999999975533 33445 4667777777543 4688899999999
Q ss_pred EEeecCCCCceEEeEE-----------------------------------------------ee----cCCCceeEEEe
Q 036510 82 IIWKEGNSNEWIKDHV-----------------------------------------------FE----DHKSSVNSIDW 110 (288)
Q Consensus 82 ~iwd~~~~~~~~~~~~-----------------------------------------------~~----~h~~~v~~l~~ 110 (288)
.+|++.-+. ++..+. .+ ...+.++|.+|
T Consensus 80 ~lw~ia~s~-~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~ 158 (323)
T KOG0322|consen 80 ILWTIAYSA-FISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDK 158 (323)
T ss_pred EEEEccCcc-eEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeec
Confidence 999874210 000000 00 12245666665
Q ss_pred ccC-CCCeEEEEEeCCCcEEEEeecCCCCe-e------eEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEee
Q 036510 111 APH-ELGLCLACGSSDGNISVFTARADGGW-D------TSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGG 182 (288)
Q Consensus 111 ~p~-~~~~~l~sg~~d~~i~i~d~~~~~~~-~------~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~ 182 (288)
.-. ++..++++|-.+|.+.+||+..+... + .......|..+|.++++.+... .=++|+
T Consensus 159 ~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~--------------rGisgg 224 (323)
T KOG0322|consen 159 DHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCD--------------RGISGG 224 (323)
T ss_pred cccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhc--------------CCcCCC
Confidence 322 23457888999999999999875211 1 1112346888899999987652 234678
Q ss_pred cCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeE
Q 036510 183 CDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVY 262 (288)
Q Consensus 183 ~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~ 262 (288)
.+..+.+|.+.-.........++......|..|..-|| ++.+||+++|+.||+|+.++... ...++-|++.|+
T Consensus 225 a~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD----~KIlATAGWD~RiRVyswrtl~p---LAVLkyHsagvn 297 (323)
T KOG0322|consen 225 ADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPD----GKILATAGWDHRIRVYSWRTLNP---LAVLKYHSAGVN 297 (323)
T ss_pred ccccceeeeeccccCcccccceEEecCCCccceEEccC----CcEEeecccCCcEEEEEeccCCc---hhhhhhhhccee
Confidence 88888889885431111111122222334888999998 47899999999999999986532 245566778999
Q ss_pred EEEeecCCCEEEEEeCCCcEEEeEc
Q 036510 263 RVSWSLTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 263 ~~~~spdg~~l~s~~~d~~v~~w~~ 287 (288)
+++|+||-..+|+||.|..|-||++
T Consensus 298 ~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 298 AVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EEEeCCCCchhhhccCCceEEeeec
Confidence 9999999999999999999999985
No 153
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=1.6e-18 Score=157.62 Aligned_cols=237 Identities=21% Similarity=0.347 Sum_probs=173.8
Q ss_pred cccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCC
Q 036510 10 HEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNS 89 (288)
Q Consensus 10 h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~ 89 (288)
|...|.+++.. +.+|++|+.+++|.+|..+.+... ..+...+.++..++|+.+ |++++.||.|-.|++-++.+.
T Consensus 55 ~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~~--~iL~Rftlp~r~~~v~g~--g~~iaagsdD~~vK~~~~~D~ 128 (933)
T KOG1274|consen 55 SGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGEED--TILARFTLPIRDLAVSGS--GKMIAAGSDDTAVKLLNLDDS 128 (933)
T ss_pred cCceeEEEeec--ccceEEeeccceEEEeeCCCCCcc--ceeeeeeccceEEEEecC--CcEEEeecCceeEEEEecccc
Confidence 67777777654 669999999999999998654322 123344778999999864 899999999999999998776
Q ss_pred CceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEE-e---eccC-CCCeeEEEeCCCCCCC
Q 036510 90 NEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSR-I---DQAH-PVGVTSVSWAPSTAPG 164 (288)
Q Consensus 90 ~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~-~---~~~~-~~~v~~i~~~p~~~~~ 164 (288)
. ....+.+|..+|.+|+|+|. +.+||+.+-||+|++|++.++....... + .... ...++.++|+|++
T Consensus 129 s---~~~~lrgh~apVl~l~~~p~--~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~--- 200 (933)
T KOG1274|consen 129 S---QEKVLRGHDAPVLQLSYDPK--GNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKG--- 200 (933)
T ss_pred c---hheeecccCCceeeeeEcCC--CCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCC---
Confidence 5 34567889999999999998 6789999999999999998653211111 0 1111 3346778999997
Q ss_pred ceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeec
Q 036510 165 ALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAR 244 (288)
Q Consensus 165 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~ 244 (288)
..|+....|+.|++|+...-...++. ....|...+.+++|+|. +.|||++.-||.|-|||.+.
T Consensus 201 -----------g~la~~~~d~~Vkvy~r~~we~~f~L--r~~~~ss~~~~~~wsPn----G~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 201 -----------GTLAVPPVDNTVKVYSRKGWELQFKL--RDKLSSSKFSDLQWSPN----GKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred -----------CeEEeeccCCeEEEEccCCceeheee--cccccccceEEEEEcCC----CcEEeeeccCCcEEEEeccc
Confidence 45677778999999997654211111 11334444899999998 47999999999999999875
Q ss_pred CCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEE
Q 036510 245 EGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTL 284 (288)
Q Consensus 245 ~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~ 284 (288)
.. .+.+...|.+++|.|+..-+-.-...|+.-+
T Consensus 264 ~~-------~~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~ 296 (933)
T KOG1274|consen 264 HE-------RHEFKRAVCCEAWKPNANAITLITALGTLGV 296 (933)
T ss_pred ch-------hccccceeEEEecCCCCCeeEEEeecccccc
Confidence 21 1555678999999999887655554444433
No 154
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.83 E-value=7.4e-18 Score=144.41 Aligned_cols=241 Identities=18% Similarity=0.302 Sum_probs=178.1
Q ss_pred cccc-ccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEee
Q 036510 7 ETGH-EDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK 85 (288)
Q Consensus 7 ~~~h-~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd 85 (288)
+.++ ...|.+++|.++|. +++|..+|+|.||+.... +..++..+|.+.|.+++-..+ | .|+||+.|+.|..||
T Consensus 241 fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~--~~~k~~~aH~ggv~~L~~lr~--G-tllSGgKDRki~~Wd 314 (626)
T KOG2106|consen 241 FEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTN--RISKQVHAHDGGVFSLCMLRD--G-TLLSGGKDRKIILWD 314 (626)
T ss_pred cccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCc--eEEeEeeecCCceEEEEEecC--c-cEeecCccceEEecc
Confidence 3344 36899999999995 889999999999997432 334555599999999998753 4 566699999999998
Q ss_pred cCCC--------Cc---------------------eEEe--------EEeecCCCceeEEEeccCCCCeEEEEEeCCCcE
Q 036510 86 EGNS--------NE---------------------WIKD--------HVFEDHKSSVNSIDWAPHELGLCLACGSSDGNI 128 (288)
Q Consensus 86 ~~~~--------~~---------------------~~~~--------~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i 128 (288)
-.-. +. .++. .+..+|.+..+.++.+|+ ..+++++++|+.+
T Consensus 315 ~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps--~~q~~T~gqdk~v 392 (626)
T KOG2106|consen 315 DNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPS--KNQLLTCGQDKHV 392 (626)
T ss_pred ccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCC--hhheeeccCcceE
Confidence 3100 00 0000 012358888999999997 5678999999999
Q ss_pred EEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccC
Q 036510 129 SVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMH 208 (288)
Q Consensus 129 ~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h 208 (288)
++|+ ...-.|.. ....++.++.|.|.+ .++.|...|...+.|.++. .++.....
T Consensus 393 ~lW~-~~k~~wt~-----~~~d~~~~~~fhpsg---------------~va~Gt~~G~w~V~d~e~~----~lv~~~~d- 446 (626)
T KOG2106|consen 393 RLWN-DHKLEWTK-----IIEDPAECADFHPSG---------------VVAVGTATGRWFVLDTETQ----DLVTIHTD- 446 (626)
T ss_pred EEcc-CCceeEEE-----EecCceeEeeccCcc---------------eEEEeeccceEEEEecccc----eeEEEEec-
Confidence 9998 22222322 233567889999874 5889999999999998773 22322223
Q ss_pred CcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510 209 TDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE 286 (288)
Q Consensus 209 ~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~ 286 (288)
..++++|+|+|+ +.+||.||.|+.|.||.+...+.... ..-+.+..+|+-+.||+|+++|.+-+.|=.|-.|+
T Consensus 447 ~~~ls~v~ysp~----G~~lAvgs~d~~iyiy~Vs~~g~~y~-r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 447 NEQLSVVRYSPD----GAFLAVGSHDNHIYIYRVSANGRKYS-RVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWK 519 (626)
T ss_pred CCceEEEEEcCC----CCEEEEecCCCeEEEEEECCCCcEEE-EeeeecCceeEEeeecCCCceEEeccCceEEEEEc
Confidence 668999999998 47999999999999999987643321 22223348999999999999999999999999994
No 155
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.83 E-value=5.5e-19 Score=154.95 Aligned_cols=261 Identities=21% Similarity=0.286 Sum_probs=164.2
Q ss_pred EEEcCC---CCEEEEeeCCCcEEEEEeCCCCc----eeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCC
Q 036510 17 VAMDYY---GKRLATASSDYSIKIIGVGNNTS----QHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNS 89 (288)
Q Consensus 17 ~~~s~~---g~~l~s~~~d~~i~lwd~~~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~ 89 (288)
.+|++- .+.|+-+..||.|.++|...... ..+.-..+|...|.++.|.+ ....|++++.|.+++.||+...
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap--ge~~lVsasGDsT~r~Wdvk~s 132 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP--GESLLVSASGDSTIRPWDVKTS 132 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC--CceeEEEccCCceeeeeeeccc
Confidence 567642 46788899999999999753211 22455668999999999986 3578999999999999999765
Q ss_pred CceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCC--CeeeE--EeeccCCCC---eeE----E-Ee
Q 036510 90 NEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADG--GWDTS--RIDQAHPVG---VTS----V-SW 157 (288)
Q Consensus 90 ~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~--~~~~~--~~~~~~~~~---v~~----i-~~ 157 (288)
.. .-...+.+|.+.|.+++|.|.+ ..++++|+.||.|.|||+|-.. ....+ .....|+.. ..- + .|
T Consensus 133 ~l-~G~~~~~GH~~SvkS~cf~~~n-~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~ 210 (720)
T KOG0321|consen 133 RL-VGGRLNLGHTGSVKSECFMPTN-PAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKW 210 (720)
T ss_pred ee-ecceeecccccccchhhhccCC-CcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccc
Confidence 42 2223467899999999999986 5679999999999999998543 10000 011112210 000 0 00
Q ss_pred -CCCCCCCceecccccCCCceeEEeec-CCcEEEEEEeCCceee--eeeeccccCCc---ceEEEEecCCCCCCCcEEEE
Q 036510 158 -APSTAPGALVGSGFLDPVQKLCSGGC-DNTVKVWKLYNGIWKM--DCFPALQMHTD---WVRDVAWAPNLGLPKSTIAS 230 (288)
Q Consensus 158 -~p~~~~~~~~~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~--~~~~~~~~h~~---~V~~v~~sp~~~~~~~~l~s 230 (288)
.+.......+...++.+...|+++|+ |+.||+||++...... +......-|.. .+.-+.+.-|. .+.+|.+
T Consensus 211 kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDs--sGt~L~A 288 (720)
T KOG0321|consen 211 KAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDS--SGTYLFA 288 (720)
T ss_pred ccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecC--CCCeEEE
Confidence 00000011122345556678998888 9999999998753221 11111111111 22233344443 1345555
Q ss_pred EeCCCcEEEEEeecCCCcccceEeeccccC----e-EEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510 231 ASEDGKVIIWTVAREGDQWEGKVLHDFKTP----V-YRVSWSLTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 231 ~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~----i-~~~~~spdg~~l~s~~~d~~v~~w~~ 287 (288)
-+.|+.|.+|++..... .++..|... . ..-..+||+.++++|+.|..+.+|.+
T Consensus 289 sCtD~sIy~ynm~s~s~----sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~v 346 (720)
T KOG0321|consen 289 SCTDNSIYFYNMRSLSI----SPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVV 346 (720)
T ss_pred EecCCcEEEEeccccCc----CchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeee
Confidence 55599999999875422 233333221 1 22356899999999999999999974
No 156
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.83 E-value=9.7e-19 Score=142.24 Aligned_cols=209 Identities=22% Similarity=0.340 Sum_probs=168.1
Q ss_pred cccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEee
Q 036510 54 HKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTA 133 (288)
Q Consensus 54 h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~ 133 (288)
-..+|++-+|+++ ...++.+-....|.|+.......|.+.++++.|...|++++|+|. ...+++|+.|.+-++|..
T Consensus 9 ~~~pitchAwn~d--rt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~--snrIvtcs~drnayVw~~ 84 (361)
T KOG1523|consen 9 LLEPITCHAWNSD--RTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPK--SNRIVTCSHDRNAYVWTQ 84 (361)
T ss_pred ccCceeeeeecCC--CceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCC--CCceeEccCCCCcccccc
Confidence 3568999999865 889999999999999998777668889999999999999999997 456899999999999999
Q ss_pred cCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCC--ceeeeeeeccccCCcc
Q 036510 134 RADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNG--IWKMDCFPALQMHTDW 211 (288)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~--~~~~~~~~~~~~h~~~ 211 (288)
..++.|.+...+.-++...+++.|+|.. +.|++||.-+.|.+|=.+.. -|- ..+.-+-+.+.
T Consensus 85 ~~~~~WkptlvLlRiNrAAt~V~WsP~e--------------nkFAVgSgar~isVcy~E~ENdWWV--sKhikkPirSt 148 (361)
T KOG1523|consen 85 PSGGTWKPTLVLLRINRAATCVKWSPKE--------------NKFAVGSGARLISVCYYEQENDWWV--SKHIKKPIRST 148 (361)
T ss_pred CCCCeeccceeEEEeccceeeEeecCcC--------------ceEEeccCccEEEEEEEecccceeh--hhhhCCccccc
Confidence 8888887776777788999999999987 88999999999999866432 111 11122346677
Q ss_pred eEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCC-------c-----ccceEeecc---ccCeEEEEeecCCCEEEEE
Q 036510 212 VRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGD-------Q-----WEGKVLHDF---KTPVYRVSWSLTGNILAVA 276 (288)
Q Consensus 212 V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~-------~-----~~~~~~~~~---~~~i~~~~~spdg~~l~s~ 276 (288)
|.+++|+|+. -+|++||.|+.+|++....+.- + ..+.++.+. .+++.++.|+|+|..|+..
T Consensus 149 v~sldWhpnn----VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv 224 (361)
T KOG1523|consen 149 VTSLDWHPNN----VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWV 224 (361)
T ss_pred eeeeeccCCc----ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEe
Confidence 9999999984 5799999999999998865421 0 122223333 3689999999999999999
Q ss_pred eCCCcEEEeE
Q 036510 277 DGNNNVTLWE 286 (288)
Q Consensus 277 ~~d~~v~~w~ 286 (288)
+.|++|.+=|
T Consensus 225 ~Hds~v~~~d 234 (361)
T KOG1523|consen 225 GHDSTVSFVD 234 (361)
T ss_pred cCCCceEEee
Confidence 9999998755
No 157
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=1.7e-18 Score=140.15 Aligned_cols=196 Identities=15% Similarity=0.288 Sum_probs=141.1
Q ss_pred cccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEee
Q 036510 54 HKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTA 133 (288)
Q Consensus 54 h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~ 133 (288)
..+.|..+.|++ . +..|+.+|.||++++|+..... . +....|..++.+++|.++ ..+++|+.||.|+.+|+
T Consensus 12 P~d~IS~v~f~~-~-~~~LLvssWDgslrlYdv~~~~---l-~~~~~~~~plL~c~F~d~---~~~~~G~~dg~vr~~Dl 82 (323)
T KOG1036|consen 12 PEDGISSVKFSP-S-SSDLLVSSWDGSLRLYDVPANS---L-KLKFKHGAPLLDCAFADE---STIVTGGLDGQVRRYDL 82 (323)
T ss_pred ChhceeeEEEcC-c-CCcEEEEeccCcEEEEeccchh---h-hhheecCCceeeeeccCC---ceEEEeccCceEEEEEe
Confidence 367799999984 3 5566666799999999986542 1 122348889999999874 35789999999999999
Q ss_pred cCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceE
Q 036510 134 RADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVR 213 (288)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~ 213 (288)
..+.. .....|..++.+|.+++.. +.+++||+|++|++||.+... ..-.+. ....|.
T Consensus 83 n~~~~----~~igth~~~i~ci~~~~~~--------------~~vIsgsWD~~ik~wD~R~~~----~~~~~d-~~kkVy 139 (323)
T KOG1036|consen 83 NTGNE----DQIGTHDEGIRCIEYSYEV--------------GCVISGSWDKTIKFWDPRNKV----VVGTFD-QGKKVY 139 (323)
T ss_pred cCCcc----eeeccCCCceEEEEeeccC--------------CeEEEcccCccEEEEeccccc----cccccc-cCceEE
Confidence 87543 2345688999999998765 679999999999999998531 111211 122577
Q ss_pred EEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcc--------------------------------------------
Q 036510 214 DVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQW-------------------------------------------- 249 (288)
Q Consensus 214 ~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~-------------------------------------------- 249 (288)
++..+. ..|+.|..|..+.+||++....+.
T Consensus 140 ~~~v~g------~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~ 213 (323)
T KOG1036|consen 140 CMDVSG------NRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQ 213 (323)
T ss_pred EEeccC------CEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHh
Confidence 776554 467778888888888887542110
Q ss_pred -cceEeeccc---------cCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510 250 -EGKVLHDFK---------TPVYRVSWSLTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 250 -~~~~~~~~~---------~~i~~~~~spdg~~l~s~~~d~~v~~w~~ 287 (288)
.+-.++.|. =||++++|||--+.||+|++||.|.+||.
T Consensus 214 skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~ 261 (323)
T KOG1036|consen 214 SKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDL 261 (323)
T ss_pred hhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccC
Confidence 000111221 16899999999999999999999999984
No 158
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.83 E-value=2.9e-18 Score=146.88 Aligned_cols=239 Identities=20% Similarity=0.335 Sum_probs=178.5
Q ss_pred ccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCC----------c----------e-e-----------------eEE
Q 036510 9 GHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNT----------S----------Q-H-----------------LAK 50 (288)
Q Consensus 9 ~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~----------~----------~-~-----------------~~~ 50 (288)
.|++.|++++.-.+|+ |+||++|..|.+||-+-.. + . . -..
T Consensus 285 aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~ 363 (626)
T KOG2106|consen 285 AHDGGVFSLCMLRDGT-LLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLT 363 (626)
T ss_pred ecCCceEEEEEecCcc-EeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEE
Confidence 8999999999999996 6669999999999732000 0 0 0 011
Q ss_pred EeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEE
Q 036510 51 LSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISV 130 (288)
Q Consensus 51 ~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i 130 (288)
..+|.+..|.++..+ +.++|++++.|+.+++|+ ...-.|.+ . ..+++.|++|+|. + .+|.|...|...+
T Consensus 364 v~gh~delwgla~hp--s~~q~~T~gqdk~v~lW~-~~k~~wt~--~---~~d~~~~~~fhps--g-~va~Gt~~G~w~V 432 (626)
T KOG2106|consen 364 VQGHGDELWGLATHP--SKNQLLTCGQDKHVRLWN-DHKLEWTK--I---IEDPAECADFHPS--G-VVAVGTATGRWFV 432 (626)
T ss_pred EEecccceeeEEcCC--ChhheeeccCcceEEEcc-CCceeEEE--E---ecCceeEeeccCc--c-eEEEeeccceEEE
Confidence 237889999999754 368999999999999998 33333322 2 3568999999997 5 7899999999999
Q ss_pred EeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCc
Q 036510 131 FTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTD 210 (288)
Q Consensus 131 ~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~ 210 (288)
.|..+.. ....... +.++..+.|+|++ .+|+.|+.|+.|.||.+..+.+....+.. -|..
T Consensus 433 ~d~e~~~---lv~~~~d-~~~ls~v~ysp~G--------------~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k--~~gs 492 (626)
T KOG2106|consen 433 LDTETQD---LVTIHTD-NEQLSVVRYSPDG--------------AFLAVGSHDNHIYIYRVSANGRKYSRVGK--CSGS 492 (626)
T ss_pred Eecccce---eEEEEec-CCceEEEEEcCCC--------------CEEEEecCCCeEEEEEECCCCcEEEEeee--ecCc
Confidence 9987632 2222223 7789999999998 78999999999999999776444332222 2337
Q ss_pred ceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEee------------------ccccCeEEEEeecCCCE
Q 036510 211 WVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLH------------------DFKTPVYRVSWSLTGNI 272 (288)
Q Consensus 211 ~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~------------------~~~~~i~~~~~spdg~~ 272 (288)
+|..++||+|+ ++|++-|.|-.|-.|......+. ..++ .++..|..++-+...++
T Consensus 493 ~ithLDwS~Ds----~~~~~~S~d~eiLyW~~~~~~~~---ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~ 565 (626)
T KOG2106|consen 493 PITHLDWSSDS----QFLVSNSGDYEILYWKPSECKQI---TSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKL 565 (626)
T ss_pred eeEEeeecCCC----ceEEeccCceEEEEEccccCccc---ceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhh
Confidence 89999999985 78999999999999965543221 1111 11235677788889999
Q ss_pred EEEEeCCCcEEEeE
Q 036510 273 LAVADGNNNVTLWE 286 (288)
Q Consensus 273 l~s~~~d~~v~~w~ 286 (288)
+|+|+..|+|+|+.
T Consensus 566 lA~gdd~g~v~lf~ 579 (626)
T KOG2106|consen 566 LASGDDFGKVHLFS 579 (626)
T ss_pred hhccccCceEEEEc
Confidence 99999999999986
No 159
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.82 E-value=6.2e-17 Score=142.25 Aligned_cols=249 Identities=30% Similarity=0.492 Sum_probs=186.2
Q ss_pred cccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEecccc-CeEEEEecCCCCCC-EEEEeeC-CCcEE
Q 036510 6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKG-AVWEVAWAHPKFGS-ILASCSF-DGTVI 82 (288)
Q Consensus 6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~-~l~s~s~-d~~v~ 82 (288)
...+|+..+..+.|.+.+..++.++.|+.+.+|+..... ..+..+.++.. .+..+.+. ..++. +++..+. |+.++
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~ 137 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGE-KLIKSLEGLHDSSVSKLALS-SPDGNSILLASSSLDGTVK 137 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCc-eeEEEEeccCCCceeeEEEE-CCCcceEEeccCCCCccEE
Confidence 355899999999999999999999999999999986542 24666666443 67777763 22344 5555455 99999
Q ss_pred EeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeC-CCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCC
Q 036510 83 IWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSS-DGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPST 161 (288)
Q Consensus 83 iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~ 161 (288)
+|+..... .....+..|...|..++|+|+. ..++.++. |+.+++|+..... .......|...+.++.|+|++
T Consensus 138 ~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~ 210 (466)
T COG2319 138 LWDLSTPG--KLIRTLEGHSESVTSLAFSPDG--KLLASGSSLDGTIKLWDLRTGK---PLSTLAGHTDPVSSLAFSPDG 210 (466)
T ss_pred EEEecCCC--eEEEEEecCcccEEEEEECCCC--CEEEecCCCCCceEEEEcCCCc---eEEeeccCCCceEEEEEcCCc
Confidence 99987511 2445677899999999999984 46677765 9999999998632 233445688999999999876
Q ss_pred CCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeee-ccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEE
Q 036510 162 APGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFP-ALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIW 240 (288)
Q Consensus 162 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw 240 (288)
. ..+++++.|+.|++||...+ .... .+.+|...+ -..|+|+. .++++++.|+.+++|
T Consensus 211 ~-------------~~~~~~~~d~~i~~wd~~~~----~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~d~~~~~~ 268 (466)
T COG2319 211 G-------------LLIASGSSDGTIRLWDLSTG----KLLRSTLSGHSDSV-VSSFSPDG----SLLASGSSDGTIRLW 268 (466)
T ss_pred c-------------eEEEEecCCCcEEEEECCCC----cEEeeecCCCCcce-eEeECCCC----CEEEEecCCCcEEEe
Confidence 2 24556699999999987744 2333 567787765 33799874 578899999999999
Q ss_pred EeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510 241 TVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~ 287 (288)
+...... .......+..++.++.|+|++..+++++.|+.+++|+.
T Consensus 269 ~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~ 313 (466)
T COG2319 269 DLRSSSS--LLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDL 313 (466)
T ss_pred eecCCCc--EEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEc
Confidence 9875432 11222455678999999999999999999989999974
No 160
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.82 E-value=6.5e-19 Score=150.60 Aligned_cols=222 Identities=18% Similarity=0.244 Sum_probs=170.8
Q ss_pred EEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEE
Q 036510 15 HDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIK 94 (288)
Q Consensus 15 ~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~ 94 (288)
.||+......|+++||..+.|+|||+... .+.+.+.+|+..|+++.|... .++||+++..|.|.|....++. .
T Consensus 83 ~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~k--l~hr~lkdh~stvt~v~YN~~--DeyiAsvs~gGdiiih~~~t~~---~ 155 (673)
T KOG4378|consen 83 FCVACASQSLYEISGGQSGCVKIWDLRAK--LIHRFLKDHQSTVTYVDYNNT--DEYIASVSDGGDIIIHGTKTKQ---K 155 (673)
T ss_pred HHHhhhhcceeeeccCcCceeeehhhHHH--HHhhhccCCcceeEEEEecCC--cceeEEeccCCcEEEEecccCc---c
Confidence 45555555689999999999999999632 345668899999999999754 5899999999999999886643 2
Q ss_pred eEEeecC-CCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccC
Q 036510 95 DHVFEDH-KSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLD 173 (288)
Q Consensus 95 ~~~~~~h-~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~ 173 (288)
..++... .+.|.-++++|.. ..+|.+++.+|.+.+||+..... .....+.|..+...|.|+|...
T Consensus 156 tt~f~~~sgqsvRll~ys~sk-r~lL~~asd~G~VtlwDv~g~sp--~~~~~~~HsAP~~gicfspsne----------- 221 (673)
T KOG4378|consen 156 TTTFTIDSGQSVRLLRYSPSK-RFLLSIASDKGAVTLWDVQGMSP--IFHASEAHSAPCRGICFSPSNE----------- 221 (673)
T ss_pred ccceecCCCCeEEEeeccccc-ceeeEeeccCCeEEEEeccCCCc--ccchhhhccCCcCcceecCCcc-----------
Confidence 2234322 3456688999973 45788889999999999875432 2345678999999999999863
Q ss_pred CCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceE
Q 036510 174 PVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKV 253 (288)
Q Consensus 174 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~ 253 (288)
.+|++.|.|+.|.+||.+.. +....+. -..+...|+|+|+ +.+|++|+..|.|..||++..+.+ ...
T Consensus 222 --~l~vsVG~Dkki~~yD~~s~----~s~~~l~-y~~Plstvaf~~~----G~~L~aG~s~G~~i~YD~R~~k~P--v~v 288 (673)
T KOG4378|consen 222 --ALLVSVGYDKKINIYDIRSQ----ASTDRLT-YSHPLSTVAFSEC----GTYLCAGNSKGELIAYDMRSTKAP--VAV 288 (673)
T ss_pred --ceEEEecccceEEEeecccc----cccceee-ecCCcceeeecCC----ceEEEeecCCceEEEEecccCCCC--ceE
Confidence 67999999999999999753 1222221 2335789999997 489999999999999999976544 456
Q ss_pred eeccccCeEEEEeecCC
Q 036510 254 LHDFKTPVYRVSWSLTG 270 (288)
Q Consensus 254 ~~~~~~~i~~~~~spdg 270 (288)
.+-|.+.|++++|-|.-
T Consensus 289 ~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 289 RSAHDASVTRVAFQPSP 305 (673)
T ss_pred eeecccceeEEEeeecc
Confidence 67788889999998765
No 161
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=2.1e-18 Score=143.76 Aligned_cols=255 Identities=16% Similarity=0.204 Sum_probs=180.7
Q ss_pred cccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCC----CCceeeEEEec-cccCeEEEEecCCCCCCEEEEeeCCCc
Q 036510 6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGN----NTSQHLAKLSG-HKGAVWEVAWAHPKFGSILASCSFDGT 80 (288)
Q Consensus 6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~----~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~s~d~~ 80 (288)
-..+|.+-|+.+.|+.++++|+||+.|..+++|.++. ...++++.... |...|.+++|.. .+..+.||..+++
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~--~N~~~~SG~~~~~ 128 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL--ENRFLYSGERWGT 128 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc--CCeeEecCCCcce
Confidence 3458999999999999999999999999999998852 22244554443 448899999964 3678889999999
Q ss_pred EEEeecCCCCceEEeEEeecCC---CceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEe
Q 036510 81 VIIWKEGNSNEWIKDHVFEDHK---SSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSW 157 (288)
Q Consensus 81 v~iwd~~~~~~~~~~~~~~~h~---~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~ 157 (288)
|...|+.+..+ + ....|. +.|+.++.+|. ...+++.+.++.+.+||.+............-.+....++-|
T Consensus 129 VI~HDiEt~qs---i-~V~~~~~~~~~VY~m~~~P~--DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F 202 (609)
T KOG4227|consen 129 VIKHDIETKQS---I-YVANENNNRGDVYHMDQHPT--DNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEF 202 (609)
T ss_pred eEeeeccccee---e-eeecccCcccceeecccCCC--CceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeee
Confidence 99999987542 1 122344 48999999997 456888899999999999875422222222333456778889
Q ss_pred CCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCcee----------------------------------eeeee
Q 036510 158 APSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWK----------------------------------MDCFP 203 (288)
Q Consensus 158 ~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~----------------------------------~~~~~ 203 (288)
.|..+ .+|++.+..+-+.+||.+..+.. .++.-
T Consensus 203 ~P~~P-------------~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~ 269 (609)
T KOG4227|consen 203 HPETP-------------ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPL 269 (609)
T ss_pred cCCCc-------------eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCE
Confidence 98875 67778888888888988543110 00000
Q ss_pred ccccCCc------------------ceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCc-----------------
Q 036510 204 ALQMHTD------------------WVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQ----------------- 248 (288)
Q Consensus 204 ~~~~h~~------------------~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~----------------- 248 (288)
.+.-|.. .+.+++|..+ ..+++||++-.|.+|.+-...+.
T Consensus 270 ~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D-----~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~ 344 (609)
T KOG4227|consen 270 YFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDD-----YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEI 344 (609)
T ss_pred EeeeecccceeEeccCCCCcceeeeeeeeeeeecc-----eeeeccCcccceEEEecCCCccccCccccCcchhhCchhh
Confidence 0111221 2334444443 46999999999999998542110
Q ss_pred ---ccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510 249 ---WEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE 286 (288)
Q Consensus 249 ---~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~ 286 (288)
.+...+.+|.+.++-+-|+|-..+|++.+-.+.++||.
T Consensus 345 ~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 345 FIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred eecceeEEEecccccccceeecCCcceEeccchhhheeccc
Confidence 12234567888889999999999999999999999995
No 162
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.82 E-value=3.2e-17 Score=139.58 Aligned_cols=226 Identities=11% Similarity=0.077 Sum_probs=147.6
Q ss_pred CCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEE-EEeeCCCcEEEeecCCCCceEEeEEeecC
Q 036510 23 GKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSIL-ASCSFDGTVIIWKEGNSNEWIKDHVFEDH 101 (288)
Q Consensus 23 g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~s~d~~v~iwd~~~~~~~~~~~~~~~h 101 (288)
++.++|++.|+.+++||.... +.+..+.+|.. +..++|+++ +..+ ++++.++.+++||..++. ....+..+
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~--~~~~~~~~~~~-~~~l~~~~d--g~~l~~~~~~~~~v~~~d~~~~~---~~~~~~~~ 72 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATL--EVTRTFPVGQR-PRGITLSKD--GKLLYVCASDSDTIQVIDLATGE---VIGTLPSG 72 (300)
T ss_pred CcEEEEecCCCEEEEEECCCC--ceEEEEECCCC-CCceEECCC--CCEEEEEECCCCeEEEEECCCCc---EEEeccCC
Confidence 357899999999999998543 55667766544 678999864 6655 677889999999987654 22334333
Q ss_pred CCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEe
Q 036510 102 KSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSG 181 (288)
Q Consensus 102 ~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~ 181 (288)
. .+..+.|+|++ ..++++++.++.|++||++..... ...+ +...+..+.|+|++ .+++++
T Consensus 73 ~-~~~~~~~~~~g-~~l~~~~~~~~~l~~~d~~~~~~~---~~~~-~~~~~~~~~~~~dg--------------~~l~~~ 132 (300)
T TIGR03866 73 P-DPELFALHPNG-KILYIANEDDNLVTVIDIETRKVL---AEIP-VGVEPEGMAVSPDG--------------KIVVNT 132 (300)
T ss_pred C-CccEEEECCCC-CEEEEEcCCCCeEEEEECCCCeEE---eEee-CCCCcceEEECCCC--------------CEEEEE
Confidence 3 35678899984 344556677899999999764321 1111 22346788999987 667777
Q ss_pred ecCC-cEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEE-EEEeCCCcEEEEEeecCCCcccceE-eec--
Q 036510 182 GCDN-TVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTI-ASASEDGKVIIWTVAREGDQWEGKV-LHD-- 256 (288)
Q Consensus 182 ~~d~-~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l-~s~s~D~~i~iw~~~~~~~~~~~~~-~~~-- 256 (288)
+.++ .+..||..++. ....+. .......+.|+|++ ++| +++..|+.|++||++..+.. ... ...
T Consensus 133 ~~~~~~~~~~d~~~~~----~~~~~~-~~~~~~~~~~s~dg----~~l~~~~~~~~~v~i~d~~~~~~~--~~~~~~~~~ 201 (300)
T TIGR03866 133 SETTNMAHFIDTKTYE----IVDNVL-VDQRPRFAEFTADG----KELWVSSEIGGTVSVIDVATRKVI--KKITFEIPG 201 (300)
T ss_pred ecCCCeEEEEeCCCCe----EEEEEE-cCCCccEEEECCCC----CEEEEEcCCCCEEEEEEcCcceee--eeeeecccc
Confidence 6664 46678986652 211111 12235778999984 455 45556999999998753211 111 110
Q ss_pred -c--ccCeEEEEeecCCCEEEEE-eCCCcEEEeEc
Q 036510 257 -F--KTPVYRVSWSLTGNILAVA-DGNNNVTLWEE 287 (288)
Q Consensus 257 -~--~~~i~~~~~spdg~~l~s~-~~d~~v~~w~~ 287 (288)
. ......++|+|||++++++ ..++.|.+||.
T Consensus 202 ~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~ 236 (300)
T TIGR03866 202 VHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDA 236 (300)
T ss_pred cccccCCccceEECCCCCEEEEEcCCCCeEEEEEC
Confidence 0 1123568999999986554 45678999985
No 163
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.81 E-value=8.7e-20 Score=164.17 Aligned_cols=255 Identities=24% Similarity=0.339 Sum_probs=181.4
Q ss_pred ccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeec
Q 036510 7 ETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE 86 (288)
Q Consensus 7 ~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~ 86 (288)
+.||-.+|+|+.|...|+++.+|+.|..++||..+ +..++.+..||.+.++.++.+.. ...++++|.|..|++|.+
T Consensus 186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~e--t~~~lAs~rGhs~ditdlavs~~--n~~iaaaS~D~vIrvWrl 261 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSME--TARCLASCRGHSGDITDLAVSSN--NTMIAAASNDKVIRVWRL 261 (1113)
T ss_pred HHhhhhheeeeeeccccceEeecCccceeeeeecc--chhhhccCCCCccccchhccchh--hhhhhhcccCceEEEEec
Confidence 45899999999999999999999999999999863 45788999999999999998753 678899999999999998
Q ss_pred CCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecC-CCCeeeEEeecc-CCCCeeEEEeCCCCCCC
Q 036510 87 GNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARA-DGGWDTSRIDQA-HPVGVTSVSWAPSTAPG 164 (288)
Q Consensus 87 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~-~~~~~~~~~~~~-~~~~v~~i~~~p~~~~~ 164 (288)
.++. ++..+.+|.+.|++++|+|- ++.+.||++++||.+- ...+. ....+. ....+.++.|...+. .
T Consensus 262 ~~~~---pvsvLrghtgavtaiafsP~------~sss~dgt~~~wd~r~~~~~y~-prp~~~~~~~~~~s~~~~~~~~-~ 330 (1113)
T KOG0644|consen 262 PDGA---PVSVLRGHTGAVTAIAFSPR------ASSSDDGTCRIWDARLEPRIYV-PRPLKFTEKDLVDSILFENNGD-R 330 (1113)
T ss_pred CCCc---hHHHHhccccceeeeccCcc------ccCCCCCceEeccccccccccC-CCCCCcccccceeeeecccccc-c
Confidence 7765 45567899999999999996 3568999999999872 11111 111111 112344444432221 0
Q ss_pred ceec--------------------cccc----CCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCC
Q 036510 165 ALVG--------------------SGFL----DPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPN 220 (288)
Q Consensus 165 ~~~~--------------------~~~~----~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~ 220 (288)
+.++ ..++ +.....+++=.+-.+++|++.++ ...+.+.+|.+++..+.++|-
T Consensus 331 f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g----~l~H~l~ghsd~~yvLd~Hpf 406 (1113)
T KOG0644|consen 331 FLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG----QLLHNLMGHSDEVYVLDVHPF 406 (1113)
T ss_pred cccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccc----hhhhhhcccccceeeeeecCC
Confidence 0000 0000 00122333334556788998887 357788999999999999995
Q ss_pred CCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510 221 LGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE 286 (288)
Q Consensus 221 ~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~ 286 (288)
. +..-.+++.||...|||+...- + ......+ +..+...+||+||+.++....-|.+.|..
T Consensus 407 n---~ri~msag~dgst~iwdi~eg~-p-ik~y~~g-h~kl~d~kFSqdgts~~lsd~hgql~i~g 466 (1113)
T KOG0644|consen 407 N---PRIAMSAGYDGSTIIWDIWEGI-P-IKHYFIG-HGKLVDGKFSQDGTSIALSDDHGQLYILG 466 (1113)
T ss_pred C---cHhhhhccCCCceEeeecccCC-c-ceeeecc-cceeeccccCCCCceEecCCCCCceEEec
Confidence 3 3455688899999999987531 1 1111122 45678899999999999888888888764
No 164
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.81 E-value=6.5e-18 Score=137.66 Aligned_cols=245 Identities=16% Similarity=0.265 Sum_probs=164.7
Q ss_pred eEEEEEcCCCCEEEEeeCCCcEEEEEeCCC------Cce-------eeEEEeccccCeEEEEecC-----CCCCCEEEEe
Q 036510 14 VHDVAMDYYGKRLATASSDYSIKIIGVGNN------TSQ-------HLAKLSGHKGAVWEVAWAH-----PKFGSILASC 75 (288)
Q Consensus 14 v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~------~~~-------~~~~~~~h~~~v~~~~~~~-----~~~~~~l~s~ 75 (288)
..+..|+|||.-|++-+.|..+++|++... ... .++-. -...|+..+|-+ +++..++++.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~--eg~tvydy~wYs~M~s~qP~t~l~a~s 129 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQ--EGETVYDYCWYSRMKSDQPSTNLFAVS 129 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEec--cCCEEEEEEeeeccccCCCccceeeec
Confidence 345689999999999999999999987421 000 01111 124466666641 2356799999
Q ss_pred eCCCcEEEeecCCCCceEEeEEeecCCCc---eeEEEeccCCCCeEEEEEeCCCcEEEEeecC-CCCeeeEEe----ecc
Q 036510 76 SFDGTVIIWKEGNSNEWIKDHVFEDHKSS---VNSIDWAPHELGLCLACGSSDGNISVFTARA-DGGWDTSRI----DQA 147 (288)
Q Consensus 76 s~d~~v~iwd~~~~~~~~~~~~~~~h~~~---v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~-~~~~~~~~~----~~~ 147 (288)
+.+.-|+|||..+++.-...+ ...|.+. ..+|.|+|| +.++.+ +..+.|++||+.+ +..+..... ..+
T Consensus 130 sr~~PIh~wdaftG~lraSy~-~ydh~de~taAhsL~Fs~D--Geqlfa-GykrcirvFdt~RpGr~c~vy~t~~~~k~g 205 (406)
T KOG2919|consen 130 SRDQPIHLWDAFTGKLRASYR-AYDHQDEYTAAHSLQFSPD--GEQLFA-GYKRCIRVFDTSRPGRDCPVYTTVTKGKFG 205 (406)
T ss_pred cccCceeeeeccccccccchh-hhhhHHhhhhheeEEecCC--CCeEee-cccceEEEeeccCCCCCCcchhhhhccccc
Confidence 999999999998775211111 1235544 457999999 455554 5778999999954 332222111 112
Q ss_pred CCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcE
Q 036510 148 HPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKST 227 (288)
Q Consensus 148 ~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~ 227 (288)
-..-+.+++|+|... ..++.|+.-..+-|+.-... .....+.+|.+.|+-++|++++ +.
T Consensus 206 q~giisc~a~sP~~~-------------~~~a~gsY~q~~giy~~~~~----~pl~llggh~gGvThL~~~edG----n~ 264 (406)
T KOG2919|consen 206 QKGIISCFAFSPMDS-------------KTLAVGSYGQRVGIYNDDGR----RPLQLLGGHGGGVTHLQWCEDG----NK 264 (406)
T ss_pred ccceeeeeeccCCCC-------------cceeeecccceeeeEecCCC----CceeeecccCCCeeeEEeccCc----Ce
Confidence 234467889999874 57889999888888775443 3455677999999999999985 56
Q ss_pred EEEEeC-CCcEEEEEeecCCCcccceEeecccc-CeEEEEe--ecCCCEEEEEeCCCcEEEeEc
Q 036510 228 IASASE-DGKVIIWTVAREGDQWEGKVLHDFKT-PVYRVSW--SLTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 228 l~s~s~-D~~i~iw~~~~~~~~~~~~~~~~~~~-~i~~~~~--spdg~~l~s~~~d~~v~~w~~ 287 (288)
|-+|+. |-.|-.||++.-.++.-. +..|.. .=-++.| -|+|++|++|+.||.|++||.
T Consensus 265 lfsGaRk~dkIl~WDiR~~~~pv~~--L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdl 326 (406)
T KOG2919|consen 265 LFSGARKDDKILCWDIRYSRDPVYA--LERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDL 326 (406)
T ss_pred ecccccCCCeEEEEeehhccchhhh--hhhhccCccceEEEecCCCCceeeccCCCccEEEEec
Confidence 778886 889999999864332110 111111 1113444 489999999999999999995
No 165
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=2.6e-17 Score=145.35 Aligned_cols=244 Identities=22% Similarity=0.296 Sum_probs=178.5
Q ss_pred ccc-ccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeec
Q 036510 8 TGH-EDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE 86 (288)
Q Consensus 8 ~~h-~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~ 86 (288)
.|+ ...|.+++|++ |.+|+|.+.+|+|.-||+. +.+++..++.-.+.||+++..+. +..++.|+.||.+..++.
T Consensus 65 ~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~--~lk~~~~~d~~gg~IWsiai~p~--~~~l~IgcddGvl~~~s~ 139 (691)
T KOG2048|consen 65 HGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLH--TLKQKYNIDSNGGAIWSIAINPE--NTILAIGCDDGVLYDFSI 139 (691)
T ss_pred ecCCCCceeeEEEcc-CCeEEeecCCceEEEEecc--cCceeEEecCCCcceeEEEeCCc--cceEEeecCCceEEEEec
Confidence 355 57899999995 4479999999999999995 34677788888899999998753 689999999997777766
Q ss_pred CCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEe-ecc----CCCCeeEEEeCCCC
Q 036510 87 GNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRI-DQA----HPVGVTSVSWAPST 161 (288)
Q Consensus 87 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~-~~~----~~~~v~~i~~~p~~ 161 (288)
..+. ..-...+...++.|.+++|+|+ +..+++|+.||.|++||...+........ ... .+.-|.++.|-.+
T Consensus 140 ~p~~-I~~~r~l~rq~sRvLslsw~~~--~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd- 215 (691)
T KOG2048|consen 140 GPDK-ITYKRSLMRQKSRVLSLSWNPT--GTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD- 215 (691)
T ss_pred CCce-EEEEeecccccceEEEEEecCC--ccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-
Confidence 4432 2223344455689999999998 56689999999999999987754431111 111 1122334443322
Q ss_pred CCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEE
Q 036510 162 APGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWT 241 (288)
Q Consensus 162 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~ 241 (288)
..+++|..-|+|++||-..+ ++++++..|..-|.++.-.++ +.++.+++-|+.|..+.
T Consensus 216 --------------~tI~sgDS~G~V~FWd~~~g----TLiqS~~~h~adVl~Lav~~~----~d~vfsaGvd~~ii~~~ 273 (691)
T KOG2048|consen 216 --------------STIASGDSAGTVTFWDSIFG----TLIQSHSCHDADVLALAVADN----EDRVFSAGVDPKIIQYS 273 (691)
T ss_pred --------------CcEEEecCCceEEEEcccCc----chhhhhhhhhcceeEEEEcCC----CCeEEEccCCCceEEEE
Confidence 56999999999999998877 567788889999999999987 36899999999999998
Q ss_pred eecCCCcccceEe-eccccCeEEEEeecCCCEEEEEeCCCcEEE
Q 036510 242 VAREGDQWEGKVL-HDFKTPVYRVSWSLTGNILAVADGNNNVTL 284 (288)
Q Consensus 242 ~~~~~~~~~~~~~-~~~~~~i~~~~~spdg~~l~s~~~d~~v~~ 284 (288)
....+..+....- ..|...|.+++..++ .+.+|+.|.++.+
T Consensus 274 ~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i 315 (691)
T KOG2048|consen 274 LTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAI 315 (691)
T ss_pred ecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEE
Confidence 7654322222111 123345778887777 8888888887754
No 166
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.81 E-value=3.1e-17 Score=147.94 Aligned_cols=153 Identities=20% Similarity=0.266 Sum_probs=118.9
Q ss_pred ceEEEEEcCCC--CEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCC
Q 036510 13 TVHDVAMDYYG--KRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSN 90 (288)
Q Consensus 13 ~v~~~~~s~~g--~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~ 90 (288)
.|+++. .|.. +.++-|+.+|.++||++. +++.++++.++...|+++.-+|- -++++.|-.+|+|.|++++..+
T Consensus 161 ~Ital~-HP~TYLNKIvvGs~~G~lql~Nvr--t~K~v~~f~~~~s~IT~ieqsPa--LDVVaiG~~~G~ViifNlK~dk 235 (910)
T KOG1539|consen 161 FITALL-HPSTYLNKIVVGSSQGRLQLWNVR--TGKVVYTFQEFFSRITAIEQSPA--LDVVAIGLENGTVIIFNLKFDK 235 (910)
T ss_pred ceeeEe-cchhheeeEEEeecCCcEEEEEec--cCcEEEEecccccceeEeccCCc--ceEEEEeccCceEEEEEcccCc
Confidence 366653 4432 568889999999999995 45789999999999999997754 5699999999999999998765
Q ss_pred ceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceeccc
Q 036510 91 EWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSG 170 (288)
Q Consensus 91 ~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~ 170 (288)
...+++.-.++|++++|..|+ .-++++|+..|.+.+||+...... .....+|...+....|.|..
T Consensus 236 ---il~sFk~d~g~VtslSFrtDG-~p~las~~~~G~m~~wDLe~kkl~--~v~~nah~~sv~~~~fl~~e--------- 300 (910)
T KOG1539|consen 236 ---ILMSFKQDWGRVTSLSFRTDG-NPLLASGRSNGDMAFWDLEKKKLI--NVTRNAHYGSVTGATFLPGE--------- 300 (910)
T ss_pred ---EEEEEEccccceeEEEeccCC-CeeEEeccCCceEEEEEcCCCeee--eeeeccccCCcccceecCCC---------
Confidence 334455335899999999886 346889988999999999765322 23445787788888888776
Q ss_pred ccCCCceeEEeecCCcEEEE
Q 036510 171 FLDPVQKLCSGGCDNTVKVW 190 (288)
Q Consensus 171 ~~~~~~~l~s~~~d~~i~iw 190 (288)
-.++|.+.|+++++|
T Consensus 301 -----pVl~ta~~DnSlk~~ 315 (910)
T KOG1539|consen 301 -----PVLVTAGADNSLKVW 315 (910)
T ss_pred -----ceEeeccCCCceeEE
Confidence 467888888887766
No 167
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.80 E-value=3.1e-17 Score=137.18 Aligned_cols=262 Identities=23% Similarity=0.357 Sum_probs=166.2
Q ss_pred cccceEEEEEcCCCC-EEEEeeCCCcEEEEEeCCC-------CceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcE
Q 036510 10 HEDTVHDVAMDYYGK-RLATASSDYSIKIIGVGNN-------TSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTV 81 (288)
Q Consensus 10 h~~~v~~~~~s~~g~-~l~s~~~d~~i~lwd~~~~-------~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v 81 (288)
-..+|+++.|.+.+. .|+||+.|..|+||.+... ..+.+..|..|+.+|+.+.|++. |++|+||+++|.|
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~--gelLASg~D~g~v 89 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPD--GELLASGGDGGEV 89 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCC--cCeeeecCCCceE
Confidence 357889999998764 9999999999999987421 23446778899999999999864 8999999999999
Q ss_pred EEeecC--------C-----CCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccC
Q 036510 82 IIWKEG--------N-----SNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAH 148 (288)
Q Consensus 82 ~iwd~~--------~-----~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~ 148 (288)
.+|-.. . ...|...+.+.+|...|.-++|+|+ +.++++|+-|+.+++||++.++ .......|
T Consensus 90 ~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d--~~~l~s~s~dns~~l~Dv~~G~---l~~~~~dh 164 (434)
T KOG1009|consen 90 FLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPD--SNFLVSGSVDNSVRLWDVHAGQ---LLAILDDH 164 (434)
T ss_pred EEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCC--CceeeeeeccceEEEEEeccce---eEeecccc
Confidence 999765 1 2235555667789999999999998 6789999999999999998653 22233334
Q ss_pred CCCeeEEEeCCCCCC--------------------------------------Cce-------------ecccccCCCce
Q 036510 149 PVGVTSVSWAPSTAP--------------------------------------GAL-------------VGSGFLDPVQK 177 (288)
Q Consensus 149 ~~~v~~i~~~p~~~~--------------------------------------~~~-------------~~~~~~~~~~~ 177 (288)
..-+.-++|.|-..- +.. .-..|..++.+
T Consensus 165 ~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~l 244 (434)
T KOG1009|consen 165 EHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSL 244 (434)
T ss_pred ccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcE
Confidence 333444444443210 000 00011233445
Q ss_pred eEEeec----CCcE-----EEEEEeCCceeeeeeeccccCCcceEEEEecCCC-------------CCCCcEEEEEeCCC
Q 036510 178 LCSGGC----DNTV-----KVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNL-------------GLPKSTIASASEDG 235 (288)
Q Consensus 178 l~s~~~----d~~i-----~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~-------------~~~~~~l~s~s~D~ 235 (288)
|++... .+.+ .+++-.. .-.....+.....++..|.|+|-. .++-.++.+...-+
T Consensus 245 lvtPag~~~~g~~~~~n~tYvfsrk~---l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~ 321 (434)
T KOG1009|consen 245 LVTPAGLFKVGGGVFRNTSYVFSRKD---LKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKN 321 (434)
T ss_pred EEcccceeeeCCceeeceeEeecccc---ccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecc
Confidence 554421 1111 1111000 001111223344456777777721 01113344445556
Q ss_pred cEEEEEeecCCCcccceEeec-cccCeEEEEeecCCCEEEEEeCCCcEEE
Q 036510 236 KVIIWTVAREGDQWEGKVLHD-FKTPVYRVSWSLTGNILAVADGNNNVTL 284 (288)
Q Consensus 236 ~i~iw~~~~~~~~~~~~~~~~-~~~~i~~~~~spdg~~l~s~~~d~~v~~ 284 (288)
.+.+||.+..... ..+.. |-..|+.++|++||..|+..|.||-.-+
T Consensus 322 svyvydtq~~~P~---~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~ 368 (434)
T KOG1009|consen 322 SVYVYDTQTLEPL---AVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSL 368 (434)
T ss_pred eEEEeccccccce---EEEeeeeeeeecceeecCCCcEEEEeccCCceEE
Confidence 8999997753211 11111 3468999999999999999999996544
No 168
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.80 E-value=5.2e-18 Score=136.34 Aligned_cols=230 Identities=20% Similarity=0.340 Sum_probs=159.6
Q ss_pred CCCcEEEEEeCCCCce-eeEEEeccccCeEEEEecCCCCCCEEEEeeCC-------CcEEEeecCCCC------ceEEeE
Q 036510 31 SDYSIKIIGVGNNTSQ-HLAKLSGHKGAVWEVAWAHPKFGSILASCSFD-------GTVIIWKEGNSN------EWIKDH 96 (288)
Q Consensus 31 ~d~~i~lwd~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d-------~~v~iwd~~~~~------~~~~~~ 96 (288)
.|+.|.+-.++.+... ....+.-|.+.||.|+-+ |.+..+|+|+-++ ..+.||.+.... ++.++.
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~-P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~ 116 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASS-PFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVA 116 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhcC-CCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhh
Confidence 3566777766543222 234566688999999965 4567888887653 346789864221 122222
Q ss_pred Eee-cCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEe---eccCCCCeeEEEeCCCCCCCceeccccc
Q 036510 97 VFE-DHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRI---DQAHPVGVTSVSWAPSTAPGALVGSGFL 172 (288)
Q Consensus 97 ~~~-~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~---~~~~~~~v~~i~~~p~~~~~~~~~~~~~ 172 (288)
.+. .+.+.|.|+.|.|+ +..+++.. |+.|.+|++.+......... ...|....++-.|+|...
T Consensus 117 ~Ldteavg~i~cvew~Pn--s~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHd---------- 183 (370)
T KOG1007|consen 117 SLDTEAVGKINCVEWEPN--SDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHD---------- 183 (370)
T ss_pred cCCHHHhCceeeEEEcCC--CCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCc----------
Confidence 333 46679999999996 45566664 89999999987543211111 112444567778998531
Q ss_pred CCCceeEEeecCCcEEEEEEeCCceeeeeeecc-ccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccc
Q 036510 173 DPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPAL-QMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEG 251 (288)
Q Consensus 173 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~ 251 (288)
++.+++. .|+++..||+++- ++...+ ..|...|++++|+|+. ..+||++++|+.|||||.+..+.+ .
T Consensus 184 --gnqv~tt-~d~tl~~~D~RT~----~~~~sI~dAHgq~vrdlDfNpnk---q~~lvt~gDdgyvriWD~R~tk~p--v 251 (370)
T KOG1007|consen 184 --GNQVATT-SDSTLQFWDLRTM----KKNNSIEDAHGQRVRDLDFNPNK---QHILVTCGDDGYVRIWDTRKTKFP--V 251 (370)
T ss_pred --cceEEEe-CCCcEEEEEccch----hhhcchhhhhcceeeeccCCCCc---eEEEEEcCCCccEEEEeccCCCcc--c
Confidence 2455554 4899999999863 222222 6788899999999986 578999999999999999875432 3
Q ss_pred eEeeccccCeEEEEeecC-CCEEEEEeCCCcEEEeE
Q 036510 252 KVLHDFKTPVYRVSWSLT-GNILAVADGNNNVTLWE 286 (288)
Q Consensus 252 ~~~~~~~~~i~~~~~spd-g~~l~s~~~d~~v~~w~ 286 (288)
..+.+|.-+|.++-|+|- .++|++|++|..|.||-
T Consensus 252 ~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsc 287 (370)
T KOG1007|consen 252 QELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSC 287 (370)
T ss_pred cccCCCceEEEEEEecCccceEEEecCCCceeEEEe
Confidence 455777889999999995 68899999999999985
No 169
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.80 E-value=5.5e-18 Score=141.26 Aligned_cols=208 Identities=17% Similarity=0.271 Sum_probs=150.8
Q ss_pred EeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCc----eEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCC
Q 036510 51 LSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNE----WIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDG 126 (288)
Q Consensus 51 ~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~----~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~ 126 (288)
..||+++|..+.|.| .+...+||||.|.+|.||++-.... ...+..+.+|...|.-+.|||.. ..+|++++.|+
T Consensus 77 v~GHt~~vLDi~w~P-fnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA-~NVLlsag~Dn 154 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCP-FNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTA-PNVLLSAGSDN 154 (472)
T ss_pred ccCccccccccccCc-cCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccc-hhhHhhccCCc
Confidence 468999999999985 3568999999999999999743321 12455688999999999999986 45678888999
Q ss_pred cEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccc
Q 036510 127 NISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQ 206 (288)
Q Consensus 127 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 206 (288)
+|.+|+..++..+- . -.|++-|.+++|+.++ ++|+|...|+.|||||.+++. .+.+-.
T Consensus 155 ~v~iWnv~tgeali--~--l~hpd~i~S~sfn~dG--------------s~l~TtckDKkvRv~dpr~~~----~v~e~~ 212 (472)
T KOG0303|consen 155 TVSIWNVGTGEALI--T--LDHPDMVYSMSFNRDG--------------SLLCTTCKDKKVRVIDPRRGT----VVSEGV 212 (472)
T ss_pred eEEEEeccCCceee--e--cCCCCeEEEEEeccCC--------------ceeeeecccceeEEEcCCCCc----Eeeecc
Confidence 99999998875432 2 2399999999999987 789999999999999999873 344434
Q ss_pred cCCcc-eEEEEecCCCCCCCcEEEEE---eCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEe-CCCc
Q 036510 207 MHTDW-VRDVAWAPNLGLPKSTIASA---SEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVAD-GNNN 281 (288)
Q Consensus 207 ~h~~~-V~~v~~sp~~~~~~~~l~s~---s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~-~d~~ 281 (288)
+|.+. -..+.|-.++ ..+.|| .++..+-+||......+.....+.. ++.|.---|.||.++++.++ +|+.
T Consensus 213 ~heG~k~~Raifl~~g----~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~ 287 (472)
T KOG0303|consen 213 AHEGAKPARAIFLASG----KIFTTGFSRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSS 287 (472)
T ss_pred cccCCCcceeEEeccC----ceeeeccccccccceeccCcccccCcceeEEecc-CCceEEeeecCCCCEEEEEecCCcc
Confidence 45441 1233454443 334444 2477899999875433321122211 34566667889988876554 7999
Q ss_pred EEEeEc
Q 036510 282 VTLWEE 287 (288)
Q Consensus 282 v~~w~~ 287 (288)
||.|.+
T Consensus 288 IRYyEi 293 (472)
T KOG0303|consen 288 IRYFEI 293 (472)
T ss_pred eEEEEe
Confidence 999874
No 170
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.79 E-value=8.7e-16 Score=133.31 Aligned_cols=251 Identities=16% Similarity=0.246 Sum_probs=154.4
Q ss_pred cceEEEEEcCCCCEEEEee-CCCcEEEEEeCC-CCceeeEEEeccccCeEEEEecCCCCCCEEEEee-CCCcEEEeecCC
Q 036510 12 DTVHDVAMDYYGKRLATAS-SDYSIKIIGVGN-NTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCS-FDGTVIIWKEGN 88 (288)
Q Consensus 12 ~~v~~~~~s~~g~~l~s~~-~d~~i~lwd~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~d~~v~iwd~~~ 88 (288)
.....+.++|++++|+.++ .++.|.+|+++. +....+.... ..+....++++++ +++|++++ .++.|.+|++..
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~--g~~l~v~~~~~~~v~v~~~~~ 111 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQ--GRFLFSASYNANCVSVSPLDK 111 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCC--CCEEEEEEcCCCeEEEEEECC
Confidence 4566788999999887665 478899999862 2222222222 2234568999864 67666655 589999999853
Q ss_pred CCce-EEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeE---EeeccCCCCeeEEEeCCCCCCC
Q 036510 89 SNEW-IKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTS---RIDQAHPVGVTSVSWAPSTAPG 164 (288)
Q Consensus 89 ~~~~-~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~---~~~~~~~~~v~~i~~~p~~~~~ 164 (288)
.+.. .....+. +.....++.++|++ ..++++...++.|.+||+...+.+... ............+.|+|++
T Consensus 112 ~g~~~~~~~~~~-~~~~~~~~~~~p~g-~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg--- 186 (330)
T PRK11028 112 DGIPVAPIQIIE-GLEGCHSANIDPDN-RTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQ--- 186 (330)
T ss_pred CCCCCCceeecc-CCCcccEeEeCCCC-CEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCC---
Confidence 2211 1122222 22346778899974 345566677899999999764332110 0000112345678899887
Q ss_pred ceecccccCCCceeEEee-cCCcEEEEEEeCCceeeeeeecccc------CCcceEEEEecCCCCCCCcEEEEEe-CCCc
Q 036510 165 ALVGSGFLDPVQKLCSGG-CDNTVKVWKLYNGIWKMDCFPALQM------HTDWVRDVAWAPNLGLPKSTIASAS-EDGK 236 (288)
Q Consensus 165 ~~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~------h~~~V~~v~~sp~~~~~~~~l~s~s-~D~~ 236 (288)
+++++.. .+++|.+||+..+...++.+..+.. +..+...+.|+|++ +++.++. .++.
T Consensus 187 -----------~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg----~~lyv~~~~~~~ 251 (330)
T PRK11028 187 -----------QYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDG----RHLYACDRTASL 251 (330)
T ss_pred -----------CEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCC----CEEEEecCCCCe
Confidence 5555444 4899999999742112223333221 12234468899984 5566664 4789
Q ss_pred EEEEEeecCCCcccceEeec--cccCeEEEEeecCCCEEEEEeC-CCcEEEeEc
Q 036510 237 VIIWTVAREGDQWEGKVLHD--FKTPVYRVSWSLTGNILAVADG-NNNVTLWEE 287 (288)
Q Consensus 237 i~iw~~~~~~~~~~~~~~~~--~~~~i~~~~~spdg~~l~s~~~-d~~v~~w~~ 287 (288)
|.+|++....... +.+.. .......+.|+|||++|+++.. +++|.+|++
T Consensus 252 I~v~~i~~~~~~~--~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~ 303 (330)
T PRK11028 252 ISVFSVSEDGSVL--SFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEI 303 (330)
T ss_pred EEEEEEeCCCCeE--EEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEE
Confidence 9999997543211 11111 1223457899999999998875 899999974
No 171
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=6.9e-18 Score=138.31 Aligned_cols=240 Identities=19% Similarity=0.321 Sum_probs=168.9
Q ss_pred CEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCC-
Q 036510 24 KRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHK- 102 (288)
Q Consensus 24 ~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~- 102 (288)
+.+|++-..++|+|||.. ++..+..+.+|...++.++|.....+..+.+|+.||+|++||++...+. .+..+..+.
T Consensus 41 ~~vav~lSngsv~lyd~~--tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~-a~~~~~~~~~ 117 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKG--TGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAES-ARISWTQQSG 117 (376)
T ss_pred eeEEEEecCCeEEEEecc--chhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhh-hheeccCCCC
Confidence 568888889999999974 3567888999999999999986445789999999999999999876543 223344454
Q ss_pred CceeEEEeccCCCCeEEEEEe----CCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCcee
Q 036510 103 SSVNSIDWAPHELGLCLACGS----SDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKL 178 (288)
Q Consensus 103 ~~v~~l~~~p~~~~~~l~sg~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l 178 (288)
.+-.|++.+-. ..++++|. .+-.+.+||.|..++. .....+.|...|+++.|.|..+ ++|
T Consensus 118 ~~f~~ld~nck--~~ii~~GtE~~~s~A~v~lwDvR~~qq~-l~~~~eSH~DDVT~lrFHP~~p-------------nlL 181 (376)
T KOG1188|consen 118 TPFICLDLNCK--KNIIACGTELTRSDASVVLWDVRSEQQL-LRQLNESHNDDVTQLRFHPSDP-------------NLL 181 (376)
T ss_pred CcceEeeccCc--CCeEEeccccccCceEEEEEEeccccch-hhhhhhhccCcceeEEecCCCC-------------CeE
Confidence 45667765432 45566663 3457899999976542 2234467999999999999986 889
Q ss_pred EEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCc----------
Q 036510 179 CSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQ---------- 248 (288)
Q Consensus 179 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~---------- 248 (288)
+|||.||.|.|+|+.....+ +-+....-|...|.++.|...+ | +.|-+-+-+.+..+|+++.....
T Consensus 182 lSGSvDGLvnlfD~~~d~Ee-DaL~~viN~~sSI~~igw~~~~-y--krI~clTH~Etf~~~ele~~~~~~~~~~~~~~~ 257 (376)
T KOG1188|consen 182 LSGSVDGLVNLFDTKKDNEE-DALLHVINHGSSIHLIGWLSKK-Y--KRIMCLTHMETFAIYELEDGSEETWLENPDVSA 257 (376)
T ss_pred EeecccceEEeeecCCCcch-hhHHHhhcccceeeeeeeecCC-c--ceEEEEEccCceeEEEccCCChhhcccCccchh
Confidence 99999999999999754211 1122223466668888887752 2 34667777788888887653200
Q ss_pred ------------------------------------------------ccceEeec-cccCeEEEEeecCCCEEEEEeCC
Q 036510 249 ------------------------------------------------WEGKVLHD-FKTPVYRVSWSLTGNILAVADGN 279 (288)
Q Consensus 249 ------------------------------------------------~~~~~~~~-~~~~i~~~~~spdg~~l~s~~~d 279 (288)
.....+++ +..-|.++.|...+..+.+|++|
T Consensus 258 ~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGED 337 (376)
T KOG1188|consen 258 DDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGED 337 (376)
T ss_pred hhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCC
Confidence 00000011 11235567788888999999999
Q ss_pred CcEEEeE
Q 036510 280 NNVTLWE 286 (288)
Q Consensus 280 ~~v~~w~ 286 (288)
|.+++|+
T Consensus 338 G~l~~Wk 344 (376)
T KOG1188|consen 338 GLLQAWK 344 (376)
T ss_pred ceEEEEe
Confidence 9999998
No 172
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.78 E-value=2.3e-17 Score=132.68 Aligned_cols=203 Identities=16% Similarity=0.237 Sum_probs=147.0
Q ss_pred ccccceEEEEEcC-CCCEEEEeeCCCcEEEEEeCCC-CceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeec
Q 036510 9 GHEDTVHDVAMDY-YGKRLATASSDYSIKIIGVGNN-TSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE 86 (288)
Q Consensus 9 ~h~~~v~~~~~s~-~g~~l~s~~~d~~i~lwd~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~ 86 (288)
.+-.++++..|+. +-++|.++|-|-|..|||+..+ .+...-+|-+|...|+.++|... .-++|+|+|+||+||++|+
T Consensus 148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~-s~~~FASvgaDGSvRmFDL 226 (364)
T KOG0290|consen 148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKG-SRDVFASVGADGSVRMFDL 226 (364)
T ss_pred ccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccC-ccceEEEecCCCcEEEEEe
Confidence 4556788777775 5689999999999999999654 33446678899999999999863 4679999999999999999
Q ss_pred CCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEE-eCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCc
Q 036510 87 GNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACG-SSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGA 165 (288)
Q Consensus 87 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~ 165 (288)
+...-...+..-+....+...++|++.+. .++|+- -..+.|.|.|+|... .+...++.|...|..|+|.|...
T Consensus 227 R~leHSTIIYE~p~~~~pLlRLswnkqDp-nymATf~~dS~~V~iLDiR~P~--tpva~L~~H~a~VNgIaWaPhS~--- 300 (364)
T KOG0290|consen 227 RSLEHSTIIYEDPSPSTPLLRLSWNKQDP-NYMATFAMDSNKVVILDIRVPC--TPVARLRNHQASVNGIAWAPHSS--- 300 (364)
T ss_pred cccccceEEecCCCCCCcceeeccCcCCc-hHHhhhhcCCceEEEEEecCCC--cceehhhcCcccccceEecCCCC---
Confidence 87542111111112245788999998764 445544 455689999998753 45566789999999999999874
Q ss_pred eecccccCCCceeEEeecCCcEEEEEEeCCce-e-eeeeeccccCCcceEEEEecCCCCCCCcEEEEEe
Q 036510 166 LVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIW-K-MDCFPALQMHTDWVRDVAWAPNLGLPKSTIASAS 232 (288)
Q Consensus 166 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~-~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s 232 (288)
..+||+|.|...-|||+..-.. . ...+-... -...|+.++|+|.. +..|+.+.
T Consensus 301 ----------~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~---~Dwiai~~ 355 (364)
T KOG0290|consen 301 ----------SHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQ---PDWIAICF 355 (364)
T ss_pred ----------ceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccC---CCEEEEEe
Confidence 7899999999999999965321 0 01111122 33469999999864 45565444
No 173
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.78 E-value=1.9e-15 Score=132.80 Aligned_cols=242 Identities=28% Similarity=0.450 Sum_probs=174.1
Q ss_pred ceEEEEE-cCCCC-EEEEeeC-CCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeC-CCcEEEeecCC
Q 036510 13 TVHDVAM-DYYGK-RLATASS-DYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSF-DGTVIIWKEGN 88 (288)
Q Consensus 13 ~v~~~~~-s~~g~-~l~s~~~-d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-d~~v~iwd~~~ 88 (288)
.+..+.+ ++++. +++..+. |+.+++|+... .......+..|...|..+.|+++ +..+++++. |+.+++|+...
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 187 (466)
T COG2319 111 SVSKLALSSPDGNSILLASSSLDGTVKLWDLST-PGKLIRTLEGHSESVTSLAFSPD--GKLLASGSSLDGTIKLWDLRT 187 (466)
T ss_pred ceeeEEEECCCcceEEeccCCCCccEEEEEecC-CCeEEEEEecCcccEEEEEECCC--CCEEEecCCCCCceEEEEcCC
Confidence 5666666 77777 5555444 99999999854 13567788999999999999865 668888885 99999999876
Q ss_pred CCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEE-eeccCCCCeeEEEeCCCCCCCcee
Q 036510 89 SNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSR-IDQAHPVGVTSVSWAPSTAPGALV 167 (288)
Q Consensus 89 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~v~~i~~~p~~~~~~~~ 167 (288)
.. ....+..|...|.+++|+|+.. .++++++.|+.|++||.+.+.. .. ....|.... ...|+|++
T Consensus 188 ~~---~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~d~~i~~wd~~~~~~---~~~~~~~~~~~~-~~~~~~~~------ 253 (466)
T COG2319 188 GK---PLSTLAGHTDPVSSLAFSPDGG-LLIASGSSDGTIRLWDLSTGKL---LRSTLSGHSDSV-VSSFSPDG------ 253 (466)
T ss_pred Cc---eEEeeccCCCceEEEEEcCCcc-eEEEEecCCCcEEEEECCCCcE---EeeecCCCCcce-eEeECCCC------
Confidence 33 3455667999999999998742 3566669999999998763321 22 355666554 33788775
Q ss_pred cccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCC
Q 036510 168 GSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGD 247 (288)
Q Consensus 168 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~ 247 (288)
.++++++.|+.+++||+..... ....+.+|...|.++.|+|+. ..+++++.|+.+++|+......
T Consensus 254 --------~~~~~~~~d~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~----~~~~~~~~d~~~~~~~~~~~~~ 318 (466)
T COG2319 254 --------SLLASGSSDGTIRLWDLRSSSS---LLRTLSGHSSSVLSVAFSPDG----KLLASGSSDGTVRLWDLETGKL 318 (466)
T ss_pred --------CEEEEecCCCcEEEeeecCCCc---EEEEEecCCccEEEEEECCCC----CEEEEeeCCCcEEEEEcCCCce
Confidence 5677999999999999986532 122226788899999999953 5677788898999997765422
Q ss_pred cccceEeeccccCeEEEEeecCCCEEEEE-eCCCcEEEeEc
Q 036510 248 QWEGKVLHDFKTPVYRVSWSLTGNILAVA-DGNNNVTLWEE 287 (288)
Q Consensus 248 ~~~~~~~~~~~~~i~~~~~spdg~~l~s~-~~d~~v~~w~~ 287 (288)
..... ...+.+.+..+.|++++..++.+ ..|+.+++|+.
T Consensus 319 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 358 (466)
T COG2319 319 LSSLT-LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDL 358 (466)
T ss_pred EEEee-ecccCCceEEEEECCCCCEEEEeecCCCcEEeeec
Confidence 11111 12444568889994444566666 68889999985
No 174
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.78 E-value=1e-16 Score=130.58 Aligned_cols=213 Identities=22% Similarity=0.387 Sum_probs=172.4
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCC-ceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCC
Q 036510 11 EDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNT-SQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNS 89 (288)
Q Consensus 11 ~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~ 89 (288)
-.+|++-+|++|++.+|.+-....+.||...+.. .+..+++..|...|+.+.|++. .+.|++|+.|....+|....+
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~--snrIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPK--SNRIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCC--CCceeEccCCCCccccccCCC
Confidence 4789999999999999999999999999987655 7889999999999999999864 789999999999999998777
Q ss_pred CceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCee-eEEeeccCCCCeeEEEeCCCCCCCceec
Q 036510 90 NEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWD-TSRIDQAHPVGVTSVSWAPSTAPGALVG 168 (288)
Q Consensus 90 ~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~-~~~~~~~~~~~v~~i~~~p~~~~~~~~~ 168 (288)
.+|.+...+..+...++++.|+|.+ ..+|+|+....|.+|-+...+.|= ..++.+.+...|.+++|.|+.
T Consensus 88 ~~WkptlvLlRiNrAAt~V~WsP~e--nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnn------- 158 (361)
T KOG1523|consen 88 GTWKPTLVLLRINRAATCVKWSPKE--NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNN------- 158 (361)
T ss_pred CeeccceeEEEeccceeeEeecCcC--ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCc-------
Confidence 7887777777889999999999984 458899999999999887665552 222334566789999999987
Q ss_pred ccccCCCceeEEeecCCcEEEEEEeC-----C----ceeee-----eeeccccCCcceEEEEecCCCCCCCcEEEEEeCC
Q 036510 169 SGFLDPVQKLCSGGCDNTVKVWKLYN-----G----IWKMD-----CFPALQMHTDWVRDVAWAPNLGLPKSTIASASED 234 (288)
Q Consensus 169 ~~~~~~~~~l~s~~~d~~i~iwd~~~-----~----~~~~~-----~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D 234 (288)
-+|++|+.|+.++++...- . .+..+ ++.++....++|..|.|+|+ +..|+=.+-|
T Consensus 159 -------VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~s----G~~lawv~Hd 227 (361)
T KOG1523|consen 159 -------VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPS----GNRLAWVGHD 227 (361)
T ss_pred -------ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCC----CCEeeEecCC
Confidence 6789999999999986531 1 11111 12233456678999999997 4789999999
Q ss_pred CcEEEEEeecC
Q 036510 235 GKVIIWTVARE 245 (288)
Q Consensus 235 ~~i~iw~~~~~ 245 (288)
.++.+=|....
T Consensus 228 s~v~~~da~~p 238 (361)
T KOG1523|consen 228 STVSFVDAAGP 238 (361)
T ss_pred CceEEeecCCC
Confidence 99999887654
No 175
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.77 E-value=2.8e-17 Score=133.99 Aligned_cols=233 Identities=18% Similarity=0.290 Sum_probs=162.8
Q ss_pred cCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccC---eEEEEecCCCCCCEEEEeeCCCcEEEeec-CCCCceEEe
Q 036510 20 DYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGA---VWEVAWAHPKFGSILASCSFDGTVIIWKE-GNSNEWIKD 95 (288)
Q Consensus 20 s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~---v~~~~~~~~~~~~~l~s~s~d~~v~iwd~-~~~~~~~~~ 95 (288)
.|+..++++.+.|.-|++||.-.+..+.......|.+. ..+++|+|+ |++|.. +....|+++|. +.+......
T Consensus 120 qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~D--Geqlfa-GykrcirvFdt~RpGr~c~vy 196 (406)
T KOG2919|consen 120 QPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPD--GEQLFA-GYKRCIRVFDTSRPGRDCPVY 196 (406)
T ss_pred CCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCC--CCeEee-cccceEEEeeccCCCCCCcch
Confidence 46788999999999999999754433333333345544 367999975 777765 56799999998 333221111
Q ss_pred EEe----ecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccc
Q 036510 96 HVF----EDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGF 171 (288)
Q Consensus 96 ~~~----~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~ 171 (288)
.++ .+..+-+.|++|+|.. ...++.|+..+++-||.-..++. ...+.+|..+|+-+.|.+++
T Consensus 197 ~t~~~~k~gq~giisc~a~sP~~-~~~~a~gsY~q~~giy~~~~~~p---l~llggh~gGvThL~~~edG---------- 262 (406)
T KOG2919|consen 197 TTVTKGKFGQKGIISCFAFSPMD-SKTLAVGSYGQRVGIYNDDGRRP---LQLLGGHGGGVTHLQWCEDG---------- 262 (406)
T ss_pred hhhhcccccccceeeeeeccCCC-CcceeeecccceeeeEecCCCCc---eeeecccCCCeeeEEeccCc----------
Confidence 111 1235678999999986 45789999999999987655433 34456899999999999998
Q ss_pred cCCCceeEEeec-CCcEEEEEEeCCceeeeeeeccccCCc-ceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcc
Q 036510 172 LDPVQKLCSGGC-DNTVKVWKLYNGIWKMDCFPALQMHTD-WVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQW 249 (288)
Q Consensus 172 ~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~h~~-~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~ 249 (288)
+.|.+|.. |..|-.||++... ..+..|..|.. .=..|.|.-+. .+..||+|+.||.|++||++.....
T Consensus 263 ----n~lfsGaRk~dkIl~WDiR~~~---~pv~~L~rhv~~TNQRI~FDld~--~~~~LasG~tdG~V~vwdlk~~gn~- 332 (406)
T KOG2919|consen 263 ----NKLFSGARKDDKILCWDIRYSR---DPVYALERHVGDTNQRILFDLDP--KGEILASGDTDGSVRVWDLKDLGNE- 332 (406)
T ss_pred ----CeecccccCCCeEEEEeehhcc---chhhhhhhhccCccceEEEecCC--CCceeeccCCCccEEEEecCCCCCc-
Confidence 55666654 6679999998742 45666776755 33445554432 3578999999999999999864331
Q ss_pred cceEeeccccCeEEEEeecCCCEEEEEeCCC
Q 036510 250 EGKVLHDFKTPVYRVSWSLTGNILAVADGNN 280 (288)
Q Consensus 250 ~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~ 280 (288)
....-.+...++.++++|-=.++|+++...
T Consensus 333 -~sv~~~~sd~vNgvslnP~mpilatssGqr 362 (406)
T KOG2919|consen 333 -VSVTGNYSDTVNGVSLNPIMPILATSSGQR 362 (406)
T ss_pred -ccccccccccccceecCcccceeeeccCce
Confidence 122223456789999999999999987643
No 176
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.77 E-value=4e-17 Score=136.22 Aligned_cols=210 Identities=20% Similarity=0.273 Sum_probs=147.6
Q ss_pred ccccccceEEEEEcCC-CCEEEEeeCCCcEEEEEeCCC-----CceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCc
Q 036510 7 ETGHEDTVHDVAMDYY-GKRLATASSDYSIKIIGVGNN-----TSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGT 80 (288)
Q Consensus 7 ~~~h~~~v~~~~~s~~-g~~l~s~~~d~~i~lwd~~~~-----~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~ 80 (288)
..||+++|..+.|+|- ..-|||||.|.+|.||.+..+ ..+.+..|.||...|.-++|.+ .-.++|+|++.|.+
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHP-tA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHP-TAPNVLLSAGSDNT 155 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecc-cchhhHhhccCCce
Confidence 4599999999999995 477999999999999998532 1355788999999999999954 45789999999999
Q ss_pred EEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCC-eeEEEeCC
Q 036510 81 VIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVG-VTSVSWAP 159 (288)
Q Consensus 81 v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~-v~~i~~~p 159 (288)
|.||++.++... .++. |.+-|++++|+.+ +.++++.+.|++|||||.|++..... ..+|.+. -....|-.
T Consensus 156 v~iWnv~tgeal---i~l~-hpd~i~S~sfn~d--Gs~l~TtckDKkvRv~dpr~~~~v~e---~~~heG~k~~Raifl~ 226 (472)
T KOG0303|consen 156 VSIWNVGTGEAL---ITLD-HPDMVYSMSFNRD--GSLLCTTCKDKKVRVIDPRRGTVVSE---GVAHEGAKPARAIFLA 226 (472)
T ss_pred EEEEeccCCcee---eecC-CCCeEEEEEeccC--CceeeeecccceeEEEcCCCCcEeee---cccccCCCcceeEEec
Confidence 999999887643 2344 9999999999988 67899999999999999998643222 2345321 22344443
Q ss_pred CCCCCceecccccCCCceeEEe---ecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCc
Q 036510 160 STAPGALVGSGFLDPVQKLCSG---GCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGK 236 (288)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~l~s~---~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~ 236 (288)
++ .++-|| ..++.+-|||...-... -...++.... .|.==-|.|+.+ -.-+.|-.|+.
T Consensus 227 ~g--------------~i~tTGfsr~seRq~aLwdp~nl~eP-~~~~elDtSn-Gvl~PFyD~dt~---ivYl~GKGD~~ 287 (472)
T KOG0303|consen 227 SG--------------KIFTTGFSRMSERQIALWDPNNLEEP-IALQELDTSN-GVLLPFYDPDTS---IVYLCGKGDSS 287 (472)
T ss_pred cC--------------ceeeeccccccccceeccCcccccCc-ceeEEeccCC-ceEEeeecCCCC---EEEEEecCCcc
Confidence 33 323333 34778999997542111 1122333322 243334555531 13356678999
Q ss_pred EEEEEeecC
Q 036510 237 VIIWTVARE 245 (288)
Q Consensus 237 i~iw~~~~~ 245 (288)
||-|.++..
T Consensus 288 IRYyEit~d 296 (472)
T KOG0303|consen 288 IRYFEITNE 296 (472)
T ss_pred eEEEEecCC
Confidence 999998753
No 177
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=1.3e-17 Score=144.25 Aligned_cols=218 Identities=22% Similarity=0.296 Sum_probs=157.0
Q ss_pred EEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEe-ecCCCceeEEEeccCCCCeEEEEEeCCCc
Q 036510 49 AKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVF-EDHKSSVNSIDWAPHELGLCLACGSSDGN 127 (288)
Q Consensus 49 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~-~~h~~~v~~l~~~p~~~~~~l~sg~~d~~ 127 (288)
..|.||++-|+++.|+.+ |.+|+|||+|-.+.|||...-+ +.+.+ .+|...|.|+.|-|.....++++|..|..
T Consensus 44 ~eL~GH~GCVN~LeWn~d--G~lL~SGSDD~r~ivWd~~~~K---llhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~ 118 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNAD--GELLASGSDDTRLIVWDPFEYK---LLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKL 118 (758)
T ss_pred hhhccccceecceeecCC--CCEEeecCCcceEEeecchhcc---eeeeeecccccceeEEeeeccCCCeEEEeccCcce
Confidence 447899999999999864 9999999999999999986433 44444 58999999999999877889999999999
Q ss_pred EEEEeecCC--CCe-----eeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceee-
Q 036510 128 ISVFTARAD--GGW-----DTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKM- 199 (288)
Q Consensus 128 i~i~d~~~~--~~~-----~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~- 199 (288)
|++||+... +.. -+......|...|..|+-.|+++ +.+.++++||+|+.+|+++.....
T Consensus 119 i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~P-------------htfwsasEDGtirQyDiREph~c~p 185 (758)
T KOG1310|consen 119 IKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGP-------------HTFWSASEDGTIRQYDIREPHVCNP 185 (758)
T ss_pred EEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCC-------------ceEEEecCCcceeeecccCCccCCc
Confidence 999999741 111 11223456888899998888875 789999999999999998742110
Q ss_pred --eeeecc---ccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCc----------------ccceEeeccc
Q 036510 200 --DCFPAL---QMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQ----------------WEGKVLHDFK 258 (288)
Q Consensus 200 --~~~~~~---~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~----------------~~~~~~~~~~ 258 (288)
.+...+ ....-...|+..+|.. +.+||.|+.|--.++||.+....+ +.....-+|-
T Consensus 186 ~~~~~~~l~ny~~~lielk~ltisp~r---p~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hl 262 (758)
T KOG1310|consen 186 DEDCPSILVNYNPQLIELKCLTISPSR---PYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHL 262 (758)
T ss_pred cccccHHHHHhchhhheeeeeeecCCC---CceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccc
Confidence 011111 1111235788889975 679999999999999995432110 0000001111
Q ss_pred -----------cCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510 259 -----------TPVYRVSWSLTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 259 -----------~~i~~~~~spdg~~l~s~~~d~~v~~w~~ 287 (288)
..++-++|||+|+.|++.=.-..|.++|+
T Consensus 263 kn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdv 302 (758)
T KOG1310|consen 263 KNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDV 302 (758)
T ss_pred cCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEee
Confidence 12456799999998888766677888874
No 178
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.77 E-value=1.1e-17 Score=144.94 Aligned_cols=250 Identities=19% Similarity=0.188 Sum_probs=165.6
Q ss_pred cccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeC------CCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCC
Q 036510 6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVG------NNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDG 79 (288)
Q Consensus 6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~ 79 (288)
.+.-|.+.|..+.|.+-..-|++++.|+++++|.+. +...+++.++.+|.++|-+++.+. .++.+.+|+.||
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~--n~~~~ysgg~Dg 366 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPS--NGEHCYSGGIDG 366 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecC--CceEEEeeccCc
Confidence 344688888999999888899999999999999982 123567899999999999999865 489999999999
Q ss_pred cEEEeecCC------CC-ceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCC--
Q 036510 80 TVIIWKEGN------SN-EWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPV-- 150 (288)
Q Consensus 80 ~v~iwd~~~------~~-~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~-- 150 (288)
+|+.|++-. .. .......+.+|.+.|+.+++|+. ...|++++.||++++|....... -.+...+.|..
T Consensus 367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~--~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl 443 (577)
T KOG0642|consen 367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSST--KDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL 443 (577)
T ss_pred eeeeeccCCCCCcccccCcchhccceeccccceeeeeeccc--ccceeeecCCceEEeeccCCcCc-cccCCccccCCcc
Confidence 999996531 11 01123456789999999999986 45689999999999998765432 11111122211
Q ss_pred CeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeec--cc--cCCcceEEEEecCCCCCCCc
Q 036510 151 GVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPA--LQ--MHTDWVRDVAWAPNLGLPKS 226 (288)
Q Consensus 151 ~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~--~h~~~V~~v~~sp~~~~~~~ 226 (288)
.+-...+.|.. .++...-+.--+.|+...... ....+ .. .....++-|.++|.. .
T Consensus 444 svd~~ss~~a~----------------~~~s~~~~~~~~~~~ev~s~~-~~~~s~~~~~~~~~~~in~vVs~~~~----~ 502 (577)
T KOG0642|consen 444 SVDRTSSRPAH----------------SLASFRFGYTSIDDMEVVSDL-LIFESSASPGPRRYPQINKVVSHPTA----D 502 (577)
T ss_pred eEeeccchhHh----------------hhhhcccccccchhhhhhhhe-eeccccCCCcccccCccceEEecCCC----C
Confidence 12222222111 111111111112222221100 00000 00 112346778888874 4
Q ss_pred EEEEEeCCCcEEEEEeecCCCcccceEeec---cccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510 227 TIASASEDGKVIIWTVAREGDQWEGKVLHD---FKTPVYRVSWSLTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 227 ~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~---~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~ 287 (288)
...++..|+.|+++|.... .+++. +...++++++-|+|.+|+++++|+.|++|+.
T Consensus 503 ~~~~~hed~~Ir~~dn~~~------~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kl 560 (577)
T KOG0642|consen 503 ITFTAHEDRSIRFFDNKTG------KILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKL 560 (577)
T ss_pred eeEecccCCceeccccccc------ccchheeeccceecceeecCCCceEEeecCCceeehhhc
Confidence 6778889999999987643 33332 3356899999999999999999999999984
No 179
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.77 E-value=1.3e-17 Score=144.02 Aligned_cols=207 Identities=21% Similarity=0.320 Sum_probs=150.8
Q ss_pred CEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCC
Q 036510 24 KRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKS 103 (288)
Q Consensus 24 ~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~ 103 (288)
..++-++.||.+.|.+-. ++.-....+|.+.+.+-+|+++ |.-|++++.||.|+||.- ++- +..++.....
T Consensus 76 d~~~i~s~DGkf~il~k~---~rVE~sv~AH~~A~~~gRW~~d--GtgLlt~GEDG~iKiWSr-sGM---LRStl~Q~~~ 146 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKS---ARVERSISAHAAAISSGRWSPD--GAGLLTAGEDGVIKIWSR-SGM---LRSTVVQNEE 146 (737)
T ss_pred ceEEEEcCCceEEEeccc---chhhhhhhhhhhhhhhcccCCC--CceeeeecCCceEEEEec-cch---HHHHHhhcCc
Confidence 457788899998887543 2334557899999999999875 899999999999999964 332 3334445667
Q ss_pred ceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeec
Q 036510 104 SVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGC 183 (288)
Q Consensus 104 ~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~ 183 (288)
+|.|++|.|+.. ..+.+ +.+.+.|=.+..+.. ...-++|.+-|.+++|+|.. ++++|||+
T Consensus 147 ~v~c~~W~p~S~-~vl~c--~g~h~~IKpL~~n~k---~i~WkAHDGiiL~~~W~~~s--------------~lI~sgGE 206 (737)
T KOG1524|consen 147 SIRCARWAPNSN-SIVFC--QGGHISIKPLAANSK---IIRWRAHDGLVLSLSWSTQS--------------NIIASGGE 206 (737)
T ss_pred eeEEEEECCCCC-ceEEe--cCCeEEEeecccccc---eeEEeccCcEEEEeecCccc--------------cceeecCC
Confidence 899999999853 33443 345677655543322 12235799999999999987 78999999
Q ss_pred CCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEE
Q 036510 184 DNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYR 263 (288)
Q Consensus 184 d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~ 263 (288)
|-..|+||-... .+..-..|..+|++|+|+|+. .++.+|. +++|+ + +.--+.|..
T Consensus 207 D~kfKvWD~~G~-----~Lf~S~~~ey~ITSva~npd~-----~~~v~S~-nt~R~---~-----------~p~~GSifn 261 (737)
T KOG1524|consen 207 DFRFKIWDAQGA-----NLFTSAAEEYAITSVAFNPEK-----DYLLWSY-NTARF---S-----------SPRVGSIFN 261 (737)
T ss_pred ceeEEeecccCc-----ccccCChhccceeeeeecccc-----ceeeeee-eeeee---c-----------CCCccceEE
Confidence 999999997553 233446789999999999973 4555554 34442 1 111257899
Q ss_pred EEeecCCCEEEEEeCCCcEEE
Q 036510 264 VSWSLTGNILAVADGNNNVTL 284 (288)
Q Consensus 264 ~~~spdg~~l~s~~~d~~v~~ 284 (288)
++|||||++++.|.+.|.|.+
T Consensus 262 lsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 262 LSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred EEEcCCCceeeccccCceEEE
Confidence 999999999999999887643
No 180
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.76 E-value=3.1e-17 Score=137.19 Aligned_cols=197 Identities=24% Similarity=0.425 Sum_probs=148.6
Q ss_pred cCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCC---C---ceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEE
Q 036510 56 GAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNS---N---EWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNIS 129 (288)
Q Consensus 56 ~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~---~---~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~ 129 (288)
.+|..+.|-+. ..+.|+||+.|..|+||-+... + .......+..|...|+++.|+|+ +.+||+|+.+|.+.
T Consensus 14 ~pv~s~dfq~n-~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~--gelLASg~D~g~v~ 90 (434)
T KOG1009|consen 14 EPVYSVDFQKN-SLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPD--GELLASGGDGGEVF 90 (434)
T ss_pred CceEEEEeccC-cccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCC--cCeeeecCCCceEE
Confidence 46788887543 3449999999999999976321 1 22233456789999999999998 78899999999999
Q ss_pred EEeec--------C-----CCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCc
Q 036510 130 VFTAR--------A-----DGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGI 196 (288)
Q Consensus 130 i~d~~--------~-----~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 196 (288)
+|... + ...|...+...+|...+..+.|+|++ .++++++.|+++++||+..++
T Consensus 91 lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~--------------~~l~s~s~dns~~l~Dv~~G~ 156 (434)
T KOG1009|consen 91 LWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDS--------------NFLVSGSVDNSVRLWDVHAGQ 156 (434)
T ss_pred EEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCC--------------ceeeeeeccceEEEEEeccce
Confidence 99765 2 22355556677899999999999997 789999999999999999883
Q ss_pred eeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccce------------------Eeecc-
Q 036510 197 WKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGK------------------VLHDF- 257 (288)
Q Consensus 197 ~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~------------------~~~~~- 257 (288)
....+.+|..+|.-|+|.|. .+++++-|.|...+.+.+...+...... ++++-
T Consensus 157 ----l~~~~~dh~~yvqgvawDpl----~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeT 228 (434)
T KOG1009|consen 157 ----LLAILDDHEHYVQGVAWDPL----NQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDET 228 (434)
T ss_pred ----eEeeccccccccceeecchh----hhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCc
Confidence 55677899999999999996 4789999999988887776532110000 00110
Q ss_pred -ccCeEEEEeecCCCEEEEEe
Q 036510 258 -KTPVYRVSWSLTGNILAVAD 277 (288)
Q Consensus 258 -~~~i~~~~~spdg~~l~s~~ 277 (288)
..--.+++|+|||.++++.+
T Consensus 229 lksFFrRlsfTPdG~llvtPa 249 (434)
T KOG1009|consen 229 LKSFFRRLSFTPDGSLLVTPA 249 (434)
T ss_pred hhhhhhhcccCCCCcEEEccc
Confidence 01134689999999998875
No 181
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=1.6e-16 Score=130.43 Aligned_cols=193 Identities=15% Similarity=0.249 Sum_probs=138.4
Q ss_pred CEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCC
Q 036510 70 SILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHP 149 (288)
Q Consensus 70 ~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~ 149 (288)
..+|.+-..|+|++||..+++ ....++++...++.++|........+.+|+.||+|++||+|..+..... ....++
T Consensus 41 ~~vav~lSngsv~lyd~~tg~---~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~-~~~~~~ 116 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQ---LLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARI-SWTQQS 116 (376)
T ss_pred eeEEEEecCCeEEEEeccchh---hhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhhe-eccCCC
Confidence 456777778999999988765 3456778888888999866544667899999999999999976543222 222333
Q ss_pred -CCeeEEEeCCCCCCCceecccccCCCceeEEee----cCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCC
Q 036510 150 -VGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGG----CDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLP 224 (288)
Q Consensus 150 -~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~----~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~ 224 (288)
.+..+++-+-. .+.++.|. .|..+.+||++..+.. +..-...|.+-|++|+|+|..
T Consensus 117 ~~~f~~ld~nck--------------~~ii~~GtE~~~s~A~v~lwDvR~~qq~--l~~~~eSH~DDVT~lrFHP~~--- 177 (376)
T KOG1188|consen 117 GTPFICLDLNCK--------------KNIIACGTELTRSDASVVLWDVRSEQQL--LRQLNESHNDDVTQLRFHPSD--- 177 (376)
T ss_pred CCcceEeeccCc--------------CCeEEeccccccCceEEEEEEeccccch--hhhhhhhccCcceeEEecCCC---
Confidence 33444433211 24566553 3667999999986422 122336799999999999985
Q ss_pred CcEEEEEeCCCcEEEEEeecCCCcccceEee--ccccCeEEEEeecCC-CEEEEEeCCCcEEEeEc
Q 036510 225 KSTIASASEDGKVIIWTVAREGDQWEGKVLH--DFKTPVYRVSWSLTG-NILAVADGNNNVTLWEE 287 (288)
Q Consensus 225 ~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~--~~~~~i~~~~~spdg-~~l~s~~~d~~v~~w~~ 287 (288)
+.+|+|||-||.|.+||++...+ +-.+++ .+.+.|..+.|+-++ ++|.+-+...+..+|+.
T Consensus 178 pnlLlSGSvDGLvnlfD~~~d~E--eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~el 241 (376)
T KOG1188|consen 178 PNLLLSGSVDGLVNLFDTKKDNE--EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYEL 241 (376)
T ss_pred CCeEEeecccceEEeeecCCCcc--hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEc
Confidence 78999999999999999875422 222333 345679999999888 56888899999999985
No 182
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.74 E-value=2.2e-15 Score=124.96 Aligned_cols=233 Identities=16% Similarity=0.237 Sum_probs=157.2
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCc--EEEeecCC
Q 036510 11 EDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGT--VIIWKEGN 88 (288)
Q Consensus 11 ~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~--v~iwd~~~ 88 (288)
...+....|+.+...|..|+.||. ++|..+.. .+ ......-...|...-|+ ..++|..+.+.. +++.+.+.
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~-~k-~~~~~~~~~~IvEmLFS----SSLvaiV~~~qpr~Lkv~~~Kk 77 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDGY-KIFSCSPF-EK-CFSKDTEGVSIVEMLFS----SSLVAIVSIKQPRKLKVVHFKK 77 (391)
T ss_pred CcceeeeeeccceeEEEccCCCce-eEEecCch-HH-hhcccCCCeEEEEeecc----cceeEEEecCCCceEEEEEccc
Confidence 456777889999988888998885 67766422 12 22222223345556665 346666665554 88888764
Q ss_pred CCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceec
Q 036510 89 SNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVG 168 (288)
Q Consensus 89 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~ 168 (288)
.. .++...+ ..+|.++.++.+ ++++ + ....|+|||++....++....-..++.++.+++.++..
T Consensus 78 ~~-~ICe~~f---pt~IL~VrmNr~---RLvV-~-Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n------- 141 (391)
T KOG2110|consen 78 KT-TICEIFF---PTSILAVRMNRK---RLVV-C-LEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNAN------- 141 (391)
T ss_pred Cc-eEEEEec---CCceEEEEEccc---eEEE-E-EcccEEEEecccceeehhhhccCCCccceEeeccCCCC-------
Confidence 33 3343333 457999999874 3333 3 34459999998765433222222355566666665543
Q ss_pred ccccCCCceeE--EeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCc-EEEEEeecC
Q 036510 169 SGFLDPVQKLC--SGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGK-VIIWTVARE 245 (288)
Q Consensus 169 ~~~~~~~~~l~--s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~-i~iw~~~~~ 245 (288)
.+++ ..-..|.|.|||..+- +.+..+..|++.+-+++|+|+ +.+|||+|+-|+ ||++.+...
T Consensus 142 -------~ylAyp~s~t~GdV~l~d~~nl----~~v~~I~aH~~~lAalafs~~----G~llATASeKGTVIRVf~v~~G 206 (391)
T KOG2110|consen 142 -------CYLAYPGSTTSGDVVLFDTINL----QPVNTINAHKGPLAALAFSPD----GTLLATASEKGTVIRVFSVPEG 206 (391)
T ss_pred -------ceEEecCCCCCceEEEEEcccc----eeeeEEEecCCceeEEEECCC----CCEEEEeccCceEEEEEEcCCc
Confidence 2333 2223567999998763 445567899999999999998 489999999886 899988643
Q ss_pred CCcccceEeeccc-----cCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510 246 GDQWEGKVLHDFK-----TPVYRVSWSLTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 246 ~~~~~~~~~~~~~-----~~i~~~~~spdg~~l~s~~~d~~v~~w~~ 287 (288)
..+++|. ..|++++|+||+++|++.|..+||+|+++
T Consensus 207 ------~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL 247 (391)
T KOG2110|consen 207 ------QKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKL 247 (391)
T ss_pred ------cEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEe
Confidence 3444443 35899999999999999999999999985
No 183
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=1.9e-16 Score=135.39 Aligned_cols=264 Identities=16% Similarity=0.203 Sum_probs=190.4
Q ss_pred CccccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEE
Q 036510 4 QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVII 83 (288)
Q Consensus 4 ~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~i 83 (288)
++.+.+|.+-|..|.|+..|..|+|||.|..|.+||+..... .+.-..||...|....|.|..+...+++++.||.|++
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~-~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~ 213 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSP-KLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV 213 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCc-ccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence 456779999999999999999999999999999999864422 2333468999999999887656789999999999999
Q ss_pred eecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCC---CeeEEEeCCC
Q 036510 84 WKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPV---GVTSVSWAPS 160 (288)
Q Consensus 84 wd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~---~v~~i~~~p~ 160 (288)
=.+-..+.....+.+..|.++|.-++.-|+. ...+.+++.|+.+.-+|++.+.....+...+.+.. ...+|+-.|.
T Consensus 214 s~i~~t~~~e~t~rl~~h~g~vhklav~p~s-p~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~ 292 (559)
T KOG1334|consen 214 SEILETGYVENTKRLAPHEGPVHKLAVEPDS-PKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPR 292 (559)
T ss_pred eeeccccceecceecccccCccceeeecCCC-CCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCC
Confidence 7765444333344566799999999998874 55688999999999999988765444444444443 5667777776
Q ss_pred CCCCceecccccCCCceeEEeecCCcEEEEEEeCCcee-------eeeeecccc-CCcceEEEEecCCCCCCCcEEEEEe
Q 036510 161 TAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWK-------MDCFPALQM-HTDWVRDVAWAPNLGLPKSTIASAS 232 (288)
Q Consensus 161 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-------~~~~~~~~~-h~~~V~~v~~sp~~~~~~~~l~s~s 232 (288)
.+ +.+++|+.|..+++||.+.-..+ .-+.+.+.. ..-.|+++.|+.+. .-|++.-
T Consensus 293 nt-------------~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~----sElLaSY 355 (559)
T KOG1334|consen 293 NT-------------NEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDG----SELLASY 355 (559)
T ss_pred Cc-------------cccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCc----cceeeee
Confidence 53 67999999999999998642110 011222222 22258999999763 2355555
Q ss_pred CCCcEEEEEeecCCC----------cccceEeecccc--CeEEEEee-cCCCEEEEEeCCCcEEEeE
Q 036510 233 EDGKVIIWTVAREGD----------QWEGKVLHDFKT--PVYRVSWS-LTGNILAVADGNNNVTLWE 286 (288)
Q Consensus 233 ~D~~i~iw~~~~~~~----------~~~~~~~~~~~~--~i~~~~~s-pdg~~l~s~~~d~~v~~w~ 286 (288)
.|-.|.++....... +......++|.+ .|..+.|- |.-.++++||.=|.|-||+
T Consensus 356 nDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~ 422 (559)
T KOG1334|consen 356 NDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWD 422 (559)
T ss_pred cccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEe
Confidence 677888986543322 122233566653 47777654 8999999999889999998
No 184
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=2e-15 Score=122.92 Aligned_cols=251 Identities=16% Similarity=0.255 Sum_probs=166.7
Q ss_pred CCccccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEE
Q 036510 3 PQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVI 82 (288)
Q Consensus 3 ~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~ 82 (288)
+-+++++|..+|++++||++|+.|+++|.|.+|.+||+..+ .+++.+. ...+|+.+.|.|- +-+.++.+=.+..-.
T Consensus 57 iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~g--s~l~rir-f~spv~~~q~hp~-k~n~~va~~~~~sp~ 132 (405)
T KOG1273|consen 57 IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKG--SPLKRIR-FDSPVWGAQWHPR-KRNKCVATIMEESPV 132 (405)
T ss_pred hhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCC--CceeEEE-ccCccceeeeccc-cCCeEEEEEecCCcE
Confidence 34578899999999999999999999999999999999655 3555554 4678999999643 445555555555555
Q ss_pred EeecCCCCceEEeEEeecC----C-CceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEe
Q 036510 83 IWKEGNSNEWIKDHVFEDH----K-SSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSW 157 (288)
Q Consensus 83 iwd~~~~~~~~~~~~~~~h----~-~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~ 157 (288)
+-++.++. ...++.- . ....+..|.+. +.++.+|...|.+-+|+..+.......++. ....|..|.+
T Consensus 133 vi~~s~~~----h~~Lp~d~d~dln~sas~~~fdr~--g~yIitGtsKGkllv~~a~t~e~vas~rit--s~~~IK~I~~ 204 (405)
T KOG1273|consen 133 VIDFSDPK----HSVLPKDDDGDLNSSASHGVFDRR--GKYIITGTSKGKLLVYDAETLECVASFRIT--SVQAIKQIIV 204 (405)
T ss_pred EEEecCCc----eeeccCCCccccccccccccccCC--CCEEEEecCcceEEEEecchheeeeeeeec--hheeeeEEEE
Confidence 55554422 1112210 0 01112235554 789999999999999998765433222221 1245777777
Q ss_pred CCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCc-----eeeeeeecccc--CCcceEEEEecCCCCCCCcEEEE
Q 036510 158 APSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGI-----WKMDCFPALQM--HTDWVRDVAWAPNLGLPKSTIAS 230 (288)
Q Consensus 158 ~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-----~~~~~~~~~~~--h~~~V~~v~~sp~~~~~~~~l~s 230 (288)
+..+ .+|+.-+.|+.||.|+++.-. .+.+..+.++. .+-.=++++|+.++ .|+++
T Consensus 205 s~~g--------------~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dg----eYv~a 266 (405)
T KOG1273|consen 205 SRKG--------------RFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDG----EYVCA 266 (405)
T ss_pred eccC--------------cEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCc----cEEEe
Confidence 7655 788999999999999986310 01121122211 11122567888764 57777
Q ss_pred EeC-CCcEEEEEeecCCCcccceEeeccc-cCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510 231 ASE-DGKVIIWTVAREGDQWEGKVLHDFK-TPVYRVSWSLTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 231 ~s~-D~~i~iw~~~~~~~~~~~~~~~~~~-~~i~~~~~spdg~~l~s~~~d~~v~~w~~ 287 (288)
|+. --.+.||.-.... ..+.+++.+ .....++|+|--..+++- +.|+|++|..
T Consensus 267 ~s~~aHaLYIWE~~~Gs---LVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~ 321 (405)
T KOG1273|consen 267 GSARAHALYIWEKSIGS---LVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAV 321 (405)
T ss_pred ccccceeEEEEecCCcc---eeeeecCCchhheeecccccceeeeeec-cCCceEEEEe
Confidence 775 4479999755421 235556655 457889999999999988 7799999974
No 185
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=2.8e-15 Score=138.52 Aligned_cols=257 Identities=15% Similarity=0.211 Sum_probs=171.0
Q ss_pred ccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEec---cccCeEEEEecCCCCCCEEEEeeCCCcEEE
Q 036510 7 ETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSG---HKGAVWEVAWAHPKFGSILASCSFDGTVII 83 (288)
Q Consensus 7 ~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~~~l~s~s~d~~v~i 83 (288)
.++..+.-..+.|.|-...++++..-..|++||...+ +.+..+.. ....|..+.+-...+..++++||.||.|||
T Consensus 1060 ~~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~--~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRI 1137 (1387)
T KOG1517|consen 1060 MTGNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKG--RLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRI 1137 (1387)
T ss_pred HhcCCCCCceeeecCCCceeEEcCCcceEEEEecccC--ceeccccCCCCCCCccceeeeecccchhheeeeccCceEEE
Confidence 3444445566889999999999887779999998643 34444433 235688888887667889999999999999
Q ss_pred eecC-CC-CceEEeEEee-------cCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeE
Q 036510 84 WKEG-NS-NEWIKDHVFE-------DHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTS 154 (288)
Q Consensus 84 wd~~-~~-~~~~~~~~~~-------~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 154 (288)
|+-- +. +....+..+. +-.+.-.-++|.-. +|.++++| .-..|+|||........ .+.-+....+++
T Consensus 1138 wk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~-~G~Ll~tG-d~r~IRIWDa~~E~~~~--diP~~s~t~vTa 1213 (1387)
T KOG1517|consen 1138 WKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQ-SGHLLVTG-DVRSIRIWDAHKEQVVA--DIPYGSSTLVTA 1213 (1387)
T ss_pred ecccccccCCceeEEeeccccccCccCCCCCeeeehhhh-CCeEEecC-CeeEEEEEecccceeEe--ecccCCCcccee
Confidence 9743 22 2222222221 22222233567643 46655555 47899999987542211 111222333555
Q ss_pred EEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcc--eEEEEecCCCCCCCcEEEEEe
Q 036510 155 VSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDW--VRDVAWAPNLGLPKSTIASAS 232 (288)
Q Consensus 155 i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~--V~~v~~sp~~~~~~~~l~s~s 232 (288)
++-+- . .++.++.|-.||.|++||.+..... ..+...+.|.++ |..+.+.+.+ + .-|++||
T Consensus 1214 LS~~~------------~-~gn~i~AGfaDGsvRvyD~R~a~~d-s~v~~~R~h~~~~~Iv~~slq~~G-~--~elvSgs 1276 (1387)
T KOG1517|consen 1214 LSADL------------V-HGNIIAAGFADGSVRVYDRRMAPPD-SLVCVYREHNDVEPIVHLSLQRQG-L--GELVSGS 1276 (1387)
T ss_pred ecccc------------c-CCceEEEeecCCceEEeecccCCcc-ccceeecccCCcccceeEEeecCC-C--cceeeec
Confidence 43211 1 1478999999999999999865321 234455778887 9999999864 1 2599999
Q ss_pred CCCcEEEEEeecCCCcccceEee--ccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510 233 EDGKVIIWTVAREGDQWEGKVLH--DFKTPVYRVSWSLTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 233 ~D~~i~iw~~~~~~~~~~~~~~~--~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~ 287 (288)
.||.|++||++............ +.++.++++.-|++-..+|+|++ +.|+||++
T Consensus 1277 ~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~ 1332 (1387)
T KOG1517|consen 1277 QDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSL 1332 (1387)
T ss_pred cCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEec
Confidence 99999999998631111112222 22446899999999999999999 99999985
No 186
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=5e-15 Score=116.71 Aligned_cols=237 Identities=19% Similarity=0.260 Sum_probs=158.7
Q ss_pred cceEEEEEcCCCCEEEEeeCCCcEEEEEeCC-------CCc-eeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEE
Q 036510 12 DTVHDVAMDYYGKRLATASSDYSIKIIGVGN-------NTS-QHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVII 83 (288)
Q Consensus 12 ~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~-------~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~i 83 (288)
..|..-+++|.+++|++|+.+|.|.+..+.. +.+ ..+....+|.++|+.++|. ...|++|+. |.|+-
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~----d~~Lls~gd-G~V~g 85 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH----DDFLLSGGD-GLVYG 85 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee----hhheeeccC-ceEEE
Confidence 3455667899999999999999999997741 112 2355668999999999984 256777665 99999
Q ss_pred eecCCCC-------ceE---EeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCee
Q 036510 84 WKEGNSN-------EWI---KDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVT 153 (288)
Q Consensus 84 wd~~~~~-------~~~---~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~ 153 (288)
|.-+... .|. ++++-....-.|+++.+.|.+... +. ++.|+.++-||+.++. ..+...+|++-+.
T Consensus 86 w~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi-~~-AgGD~~~y~~dlE~G~---i~r~~rGHtDYvH 160 (325)
T KOG0649|consen 86 WEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSI-LF-AGGDGVIYQVDLEDGR---IQREYRGHTDYVH 160 (325)
T ss_pred eeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcE-EE-ecCCeEEEEEEecCCE---EEEEEcCCcceee
Confidence 8653211 111 111101122368899999986443 33 3479999999998763 2356789999999
Q ss_pred EEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeec------cccC-CcceEEEEecCCCCCCCc
Q 036510 154 SVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPA------LQMH-TDWVRDVAWAPNLGLPKS 226 (288)
Q Consensus 154 ~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~------~~~h-~~~V~~v~~sp~~~~~~~ 226 (288)
++.-.... ..+.||++||++|+||.+++... +++.. ++-| ..+|.+++-+.+
T Consensus 161 ~vv~R~~~--------------~qilsG~EDGtvRvWd~kt~k~v-~~ie~yk~~~~lRp~~g~wigala~~ed------ 219 (325)
T KOG0649|consen 161 SVVGRNAN--------------GQILSGAEDGTVRVWDTKTQKHV-SMIEPYKNPNLLRPDWGKWIGALAVNED------ 219 (325)
T ss_pred eeeecccC--------------cceeecCCCccEEEEecccccee-EEeccccChhhcCcccCceeEEEeccCc------
Confidence 98752222 35889999999999999886321 11111 1222 336778876654
Q ss_pred EEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510 227 TIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE 286 (288)
Q Consensus 227 ~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~ 286 (288)
.++.|+ ...+.+|.+++. +...+..+.+++.-+.| +...+++++.-+.|+=|.
T Consensus 220 WlvCGg-Gp~lslwhLrss----e~t~vfpipa~v~~v~F--~~d~vl~~G~g~~v~~~~ 272 (325)
T KOG0649|consen 220 WLVCGG-GPKLSLWHLRSS----ESTCVFPIPARVHLVDF--VDDCVLIGGEGNHVQSYT 272 (325)
T ss_pred eEEecC-CCceeEEeccCC----CceEEEecccceeEeee--ecceEEEeccccceeeee
Confidence 565554 457889999853 34556677788888888 455666676666666665
No 187
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=1.1e-16 Score=138.98 Aligned_cols=212 Identities=24% Similarity=0.286 Sum_probs=145.8
Q ss_pred CCccccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCC--------CceeeEEEeccccCeEEEEecCCCCCCEEEE
Q 036510 3 PQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNN--------TSQHLAKLSGHKGAVWEVAWAHPKFGSILAS 74 (288)
Q Consensus 3 ~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~--------~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s 74 (288)
|-..+.+|+++|-|++.++.+..+.+|+.||+|++|++... ......++.||++.||.++++.. ...|++
T Consensus 336 pi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~--~~~Lls 413 (577)
T KOG0642|consen 336 PILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSST--KDRLLS 413 (577)
T ss_pred eeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccc--ccceee
Confidence 44567899999999999999999999999999999976411 01235678899999999999864 567999
Q ss_pred eeCCCcEEEeecCCCCceEEeEEee---cCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEee----cc
Q 036510 75 CSFDGTVIIWKEGNSNEWIKDHVFE---DHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRID----QA 147 (288)
Q Consensus 75 ~s~d~~v~iwd~~~~~~~~~~~~~~---~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~----~~ 147 (288)
||.||++++|+...... .++. .|. --.++++-.......+++. .-+.-.+++......+..+... ..
T Consensus 414 cs~DgTvr~w~~~~~~~----~~f~~~~e~g-~Plsvd~~ss~~a~~~~s~-~~~~~~~~~~ev~s~~~~~~s~~~~~~~ 487 (577)
T KOG0642|consen 414 CSSDGTVRLWEPTEESP----CTFGEPKEHG-YPLSVDRTSSRPAHSLASF-RFGYTSIDDMEVVSDLLIFESSASPGPR 487 (577)
T ss_pred ecCCceEEeeccCCcCc----cccCCccccC-CcceEeeccchhHhhhhhc-ccccccchhhhhhhheeeccccCCCccc
Confidence 99999999998754332 1222 122 2234444322111112222 1122222332222221111100 00
Q ss_pred CCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcE
Q 036510 148 HPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKST 227 (288)
Q Consensus 148 ~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~ 227 (288)
-...+..+.+.|.. .+..++..|+.|+++|..++ +.+++...|...|.++++.|++ -+
T Consensus 488 ~~~~in~vVs~~~~--------------~~~~~~hed~~Ir~~dn~~~----~~l~s~~a~~~svtslai~~ng----~~ 545 (577)
T KOG0642|consen 488 RYPQINKVVSHPTA--------------DITFTAHEDRSIRFFDNKTG----KILHSMVAHKDSVTSLAIDPNG----PY 545 (577)
T ss_pred ccCccceEEecCCC--------------CeeEecccCCceeccccccc----ccchheeeccceecceeecCCC----ce
Confidence 12346677788776 56889999999999998876 5778888999999999999985 58
Q ss_pred EEEEeCCCcEEEEEeec
Q 036510 228 IASASEDGKVIIWTVAR 244 (288)
Q Consensus 228 l~s~s~D~~i~iw~~~~ 244 (288)
|.+++.|+.+++|++..
T Consensus 546 l~s~s~d~sv~l~kld~ 562 (577)
T KOG0642|consen 546 LMSGSHDGSVRLWKLDV 562 (577)
T ss_pred EEeecCCceeehhhccc
Confidence 99999999999998764
No 188
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=1e-15 Score=128.82 Aligned_cols=203 Identities=16% Similarity=0.189 Sum_probs=144.9
Q ss_pred EEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEE
Q 036510 15 HDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIK 94 (288)
Q Consensus 15 ~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~ 94 (288)
-.++|+.+|+.|++|+.||++|+|+++.. ..+.....|...|.++.|+++ |..|++-+.| ..+||+..++..+..
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~--~t~l~e~~~~~eV~DL~FS~d--gk~lasig~d-~~~VW~~~~g~~~a~ 222 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM--LTILEEIAHHAEVKDLDFSPD--GKFLASIGAD-SARVWSVNTGAALAR 222 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcc--hhhhhhHhhcCccccceeCCC--CcEEEEecCC-ceEEEEeccCchhhh
Confidence 45789999999999999999999998533 445556789999999999975 8999999999 999999987643211
Q ss_pred eEEeecCCCceeEEEeccCCC--C-eEEEEEeCCCcEEEEeecCC--CCeeeEEeeccCCCCeeEEEeCCCCCCCceecc
Q 036510 95 DHVFEDHKSSVNSIDWAPHEL--G-LCLACGSSDGNISVFTARAD--GGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGS 169 (288)
Q Consensus 95 ~~~~~~h~~~v~~l~~~p~~~--~-~~l~sg~~d~~i~i~d~~~~--~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~ 169 (288)
.+-..-......++|..++. . ++++.-..-+.|+.|++..- +...+......-...|.+++-++++
T Consensus 223 -~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dG-------- 293 (398)
T KOG0771|consen 223 -KTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDG-------- 293 (398)
T ss_pred -cCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCC--------
Confidence 11011223456778877642 1 33334455667888776421 1111111111123468888888876
Q ss_pred cccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeec
Q 036510 170 GFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAR 244 (288)
Q Consensus 170 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~ 244 (288)
++++.|+-||.|-|++..+- +.....-+.|...|+.+.|+|+. +++++.|.|.++.+..+..
T Consensus 294 ------kf~AlGT~dGsVai~~~~~l---q~~~~vk~aH~~~VT~ltF~Pds----r~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 294 ------KFLALGTMDGSVAIYDAKSL---QRLQYVKEAHLGFVTGLTFSPDS----RYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred ------cEEEEeccCCcEEEEEecee---eeeEeehhhheeeeeeEEEcCCc----CcccccccCCceeEEEEee
Confidence 89999999999999998652 12233447899999999999985 5789999999999988764
No 189
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=2e-15 Score=132.01 Aligned_cols=221 Identities=21% Similarity=0.317 Sum_probs=147.3
Q ss_pred eeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCC
Q 036510 47 HLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDG 126 (288)
Q Consensus 47 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~ 126 (288)
+-..+.||++.|.+|...+ .|..|++||.||+|+||.++++.+. +++. ....|.|++|+|....-+||++- ++
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp--~G~wlasGsdDGtvriWEi~TgRcv---r~~~-~d~~I~~vaw~P~~~~~vLAvA~-~~ 464 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDP--SGEWLASGSDDGTVRIWEIATGRCV---RTVQ-FDSEIRSVAWNPLSDLCVLAVAV-GE 464 (733)
T ss_pred eeeeEeccCCeEEEEEecC--CcceeeecCCCCcEEEEEeecceEE---EEEe-ecceeEEEEecCCCCceeEEEEe-cC
Confidence 3456789999999999865 4999999999999999999988743 3332 34589999999986444444443 33
Q ss_pred cEEEEeecCCC-------------------------Ceee---------EEeeccCCCCeeEEEeCCCCCCCceec----
Q 036510 127 NISVFTARADG-------------------------GWDT---------SRIDQAHPVGVTSVSWAPSTAPGALVG---- 168 (288)
Q Consensus 127 ~i~i~d~~~~~-------------------------~~~~---------~~~~~~~~~~v~~i~~~p~~~~~~~~~---- 168 (288)
.+.|-+..-+. .|.. ....-.|...|..+.|...+-..+.+.
T Consensus 465 ~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~ 544 (733)
T KOG0650|consen 465 CVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSG 544 (733)
T ss_pred ceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCC
Confidence 35454432110 0110 012224677788888887662111000
Q ss_pred ---------------ccc-----------cCC-CceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCC
Q 036510 169 ---------------SGF-----------LDP-VQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNL 221 (288)
Q Consensus 169 ---------------~~~-----------~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~ 221 (288)
..| +.+ ..+|..++ -+.|+|||+..+ +.+..+....-+|..++.+|.+
T Consensus 545 ~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kq----elvKkL~tg~kwiS~msihp~G 619 (733)
T KOG0650|consen 545 NKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQ----ELVKKLLTGSKWISSMSIHPNG 619 (733)
T ss_pred cceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHH----HHHHHHhcCCeeeeeeeecCCC
Confidence 001 111 11233322 467888888653 3455566667789999999964
Q ss_pred CCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEe
Q 036510 222 GLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLW 285 (288)
Q Consensus 222 ~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w 285 (288)
..|+.|+.|+.+..+|+.....+.. .+.-|.+.+.+|+||+.-.+|++|+.|+++.|+
T Consensus 620 ----Dnli~gs~d~k~~WfDldlsskPyk--~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 620 ----DNLILGSYDKKMCWFDLDLSSKPYK--TLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVF 677 (733)
T ss_pred ----CeEEEecCCCeeEEEEcccCcchhH--HhhhhhhhhhhhhhccccceeeeecCCCcEEEE
Confidence 4688999999999999986533322 223356789999999999999999999999886
No 190
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=3.3e-15 Score=138.12 Aligned_cols=250 Identities=18% Similarity=0.212 Sum_probs=162.9
Q ss_pred ccceEEEEE-cC-CCCEEEEeeCCCcEEEEEeCC---CCceeeEE---EeccccC---e-EEEEecCCCCCCEEEEeeCC
Q 036510 11 EDTVHDVAM-DY-YGKRLATASSDYSIKIIGVGN---NTSQHLAK---LSGHKGA---V-WEVAWAHPKFGSILASCSFD 78 (288)
Q Consensus 11 ~~~v~~~~~-s~-~g~~l~s~~~d~~i~lwd~~~---~~~~~~~~---~~~h~~~---v-~~~~~~~~~~~~~l~s~s~d 78 (288)
...|+.+++ +. |-.+|++|+.||.||||+-.. ...+.+-. +.++... . .-+.|-. . ..+|++++.-
T Consensus 1109 ~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ-~-~G~Ll~tGd~ 1186 (1387)
T KOG1517|consen 1109 DTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQ-Q-SGHLLVTGDV 1186 (1387)
T ss_pred CCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhh-h-CCeEEecCCe
Confidence 356777775 43 457899999999999996422 12222221 2222211 1 1244532 2 4456666668
Q ss_pred CcEEEeecCCCCceEEeEEee-cCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCC--eeEE
Q 036510 79 GTVIIWKEGNSNEWIKDHVFE-DHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVG--VTSV 155 (288)
Q Consensus 79 ~~v~iwd~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~--v~~i 155 (288)
..|+|||..... ....++ +-...|++++-+-.+ +.++++|-.||.|++||.|....-........|+.. |..+
T Consensus 1187 r~IRIWDa~~E~---~~~diP~~s~t~vTaLS~~~~~-gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~ 1262 (1387)
T KOG1517|consen 1187 RSIRIWDAHKEQ---VVADIPYGSSTLVTALSADLVH-GNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHL 1262 (1387)
T ss_pred eEEEEEecccce---eEeecccCCCccceeecccccC-CceEEEeecCCceEEeecccCCccccceeecccCCcccceeE
Confidence 999999986533 233332 233456666544333 678999999999999999865432334455667766 8888
Q ss_pred EeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCC--c-ceEEEEecCCCCCCCcEEEEEe
Q 036510 156 SWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHT--D-WVRDVAWAPNLGLPKSTIASAS 232 (288)
Q Consensus 156 ~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~--~-~V~~v~~sp~~~~~~~~l~s~s 232 (288)
.+.+.+. ..|++|+.||.|++||++... . +-..+...|. + ..+++..+++. ..+|+|+
T Consensus 1263 slq~~G~-------------~elvSgs~~G~I~~~DlR~~~-~-e~~~~iv~~~~yGs~lTal~VH~ha----piiAsGs 1323 (1387)
T KOG1517|consen 1263 SLQRQGL-------------GELVSGSQDGDIQLLDLRMSS-K-ETFLTIVAHWEYGSALTALTVHEHA----PIIASGS 1323 (1387)
T ss_pred EeecCCC-------------cceeeeccCCeEEEEecccCc-c-cccceeeeccccCccceeeeeccCC----CeeeecC
Confidence 8887762 469999999999999998741 1 1111222232 2 37888888874 5789998
Q ss_pred CCCcEEEEEeecCCCc---ccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510 233 EDGKVIIWTVAREGDQ---WEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE 286 (288)
Q Consensus 233 ~D~~i~iw~~~~~~~~---~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~ 286 (288)
. +.|+||++.-.+.. .....+..-.+.+.+++|||---++|+|+.|.+|.||.
T Consensus 1324 ~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1324 A-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred c-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEee
Confidence 8 99999998743211 00011112235689999999999999999999999986
No 191
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.68 E-value=1e-15 Score=134.75 Aligned_cols=232 Identities=15% Similarity=0.193 Sum_probs=154.5
Q ss_pred eeCCCcEEEEEeCCCCcee----eEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCC----ceEEeEEeec
Q 036510 29 ASSDYSIKIIGVGNNTSQH----LAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSN----EWIKDHVFED 100 (288)
Q Consensus 29 ~~~d~~i~lwd~~~~~~~~----~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~----~~~~~~~~~~ 100 (288)
+|..|.|.||++..+ ++. +-.+- ....|+++.|.+ .+.+.|+.+++||.|++|.+..++ +......+..
T Consensus 599 ~g~gG~iai~el~~P-GrLPDgv~p~l~-Ngt~vtDl~WdP-FD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~ 675 (1012)
T KOG1445|consen 599 AGSGGVIAIYELNEP-GRLPDGVMPGLF-NGTLVTDLHWDP-FDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTI 675 (1012)
T ss_pred cCCCceEEEEEcCCC-CCCCcccccccc-cCceeeecccCC-CChHHeeecccCceEEEEEeccCCCCcccCCcceeeec
Confidence 455688999998643 221 11111 245689999975 467899999999999999875432 1223356778
Q ss_pred CCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEE
Q 036510 101 HKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCS 180 (288)
Q Consensus 101 h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s 180 (288)
|..+|++++|||-. ..+|++++.|-+|++||++.... ...+.+|+++|..++|+|++ +.++|
T Consensus 676 h~eKI~slRfHPLA-advLa~asyd~Ti~lWDl~~~~~---~~~l~gHtdqIf~~AWSpdG--------------r~~At 737 (1012)
T KOG1445|consen 676 HGEKITSLRFHPLA-ADVLAVASYDSTIELWDLANAKL---YSRLVGHTDQIFGIAWSPDG--------------RRIAT 737 (1012)
T ss_pred ccceEEEEEecchh-hhHhhhhhccceeeeeehhhhhh---hheeccCcCceeEEEECCCC--------------cceee
Confidence 99999999999975 56789999999999999987532 23457899999999999998 78999
Q ss_pred eecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCC----cEEEEEeecCCCcccceEeec
Q 036510 181 GGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDG----KVIIWTVAREGDQWEGKVLHD 256 (288)
Q Consensus 181 ~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~----~i~iw~~~~~~~~~~~~~~~~ 256 (288)
.+.|++|++|+.+.+...+..-....+-.+ -.|-|.-+ +.+++..+.|+ .|.+||.+.-.........-+
T Consensus 738 VcKDg~~rVy~Prs~e~pv~Eg~gpvgtRg--ARi~wacd----gr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lD 811 (1012)
T KOG1445|consen 738 VCKDGTLRVYEPRSREQPVYEGKGPVGTRG--ARILWACD----GRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLD 811 (1012)
T ss_pred eecCceEEEeCCCCCCCccccCCCCccCcc--eeEEEEec----CcEEEEecccccchhhhhhhhhhhccCCcceeeeec
Confidence 999999999998776422111111111111 23455555 35666666655 588888764221100011001
Q ss_pred cccCeEEEEeecCC-CEEEEEeCCCcEEEeEc
Q 036510 257 FKTPVYRVSWSLTG-NILAVADGNNNVTLWEE 287 (288)
Q Consensus 257 ~~~~i~~~~~spdg-~~l~s~~~d~~v~~w~~ 287 (288)
..-.+.--.|.+|. -.|++|-.|..|.+|.+
T Consensus 812 vaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv 843 (1012)
T KOG1445|consen 812 VAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEV 843 (1012)
T ss_pred ccCccccccccCCCceEEEecCCCceEEEEEe
Confidence 11112223455664 56889999999999874
No 192
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=9.8e-15 Score=130.99 Aligned_cols=222 Identities=18% Similarity=0.179 Sum_probs=144.0
Q ss_pred ccccccceEEEEEcCCCCEEEEeeCC---CcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEe-eCCCcEE
Q 036510 7 ETGHEDTVHDVAMDYYGKRLATASSD---YSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASC-SFDGTVI 82 (288)
Q Consensus 7 ~~~h~~~v~~~~~s~~g~~l~s~~~d---~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~-s~d~~v~ 82 (288)
++.|...+...+|+|||++|+.++.+ ..|++||+..+..+.+..+.+|. ..++|+++ |+.|+.+ +.++.+.
T Consensus 199 lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~---~~~~wSPD--G~~La~~~~~~g~~~ 273 (429)
T PRK01742 199 VNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHN---GAPAFSPD--GSRLAFASSKDGVLN 273 (429)
T ss_pred eccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCcc---CceeECCC--CCEEEEEEecCCcEE
Confidence 45677889999999999999988764 36999998654434454455554 35799875 7777765 4688877
Q ss_pred Eeec--CCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCC
Q 036510 83 IWKE--GNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPS 160 (288)
Q Consensus 83 iwd~--~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~ 160 (288)
||.+ ..+. ...+..+...+....|+|++ ..++.+...++...||++........ .. .+.. ....|+|+
T Consensus 274 Iy~~d~~~~~----~~~lt~~~~~~~~~~wSpDG-~~i~f~s~~~g~~~I~~~~~~~~~~~--~l-~~~~--~~~~~SpD 343 (429)
T PRK01742 274 IYVMGANGGT----PSQLTSGAGNNTEPSWSPDG-QSILFTSDRSGSPQVYRMSASGGGAS--LV-GGRG--YSAQISAD 343 (429)
T ss_pred EEEEECCCCC----eEeeccCCCCcCCEEECCCC-CEEEEEECCCCCceEEEEECCCCCeE--Ee-cCCC--CCccCCCC
Confidence 7744 3332 23345566678899999984 23344455678889998765332211 11 2222 45678888
Q ss_pred CCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEE
Q 036510 161 TAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIW 240 (288)
Q Consensus 161 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw 240 (288)
+ +.++..+.++ +.+||+.++... .+. ..+ ...++.|+|++ .+|+.++.++.+++|
T Consensus 344 G--------------~~ia~~~~~~-i~~~Dl~~g~~~--~lt--~~~--~~~~~~~sPdG----~~i~~~s~~g~~~~l 398 (429)
T PRK01742 344 G--------------KTLVMINGDN-VVKQDLTSGSTE--VLS--STF--LDESPSISPNG----IMIIYSSTQGLGKVL 398 (429)
T ss_pred C--------------CEEEEEcCCC-EEEEECCCCCeE--Eec--CCC--CCCCceECCCC----CEEEEEEcCCCceEE
Confidence 7 5666666555 556998776321 111 112 13567899984 689999999999998
Q ss_pred EeecCCCcccceEeeccccCeEEEEeecC
Q 036510 241 TVAREGDQWEGKVLHDFKTPVYRVSWSLT 269 (288)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~i~~~~~spd 269 (288)
.+...... ....+..+.+.+...+|||-
T Consensus 399 ~~~~~~G~-~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 399 QLVSADGR-FKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred EEEECCCC-ceEEccCCCCCCCCcccCCC
Confidence 87543222 22344555667888999985
No 193
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=4.8e-14 Score=128.32 Aligned_cols=272 Identities=19% Similarity=0.251 Sum_probs=168.7
Q ss_pred CccccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCC--CCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcE
Q 036510 4 QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGN--NTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTV 81 (288)
Q Consensus 4 ~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~--~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v 81 (288)
+++...|+..+++.+++|.++++|+|..||.|.+|.--. ........+.=|...|.+++|+++ |.+|+||+..+.+
T Consensus 198 ~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~--G~~LlSGG~E~VL 275 (792)
T KOG1963|consen 198 RDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSD--GAYLLSGGREGVL 275 (792)
T ss_pred chhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecC--CceEeecccceEE
Confidence 445557888889999999999999999999999995322 222334566779999999999975 9999999999999
Q ss_pred EEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCC------eeeEEee-c-cCCCCee
Q 036510 82 IIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGG------WDTSRID-Q-AHPVGVT 153 (288)
Q Consensus 82 ~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~------~~~~~~~-~-~~~~~v~ 153 (288)
-+|.++++.. .-++.-..+|..+.++||. .+.+....|+.|.+-....... ..+.... + .-..-.+
T Consensus 276 v~Wq~~T~~k----qfLPRLgs~I~~i~vS~ds--~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t 349 (792)
T KOG1963|consen 276 VLWQLETGKK----QFLPRLGSPILHIVVSPDS--DLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTT 349 (792)
T ss_pred EEEeecCCCc----ccccccCCeeEEEEEcCCC--CeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccce
Confidence 9999987652 3355566799999999984 4455556799998875522110 0000000 0 0001122
Q ss_pred EEEeCCCCC-------CCc--e------------------------------ecccccCCCceeEEee--------cC--
Q 036510 154 SVSWAPSTA-------PGA--L------------------------------VGSGFLDPVQKLCSGG--------CD-- 184 (288)
Q Consensus 154 ~i~~~p~~~-------~~~--~------------------------------~~~~~~~~~~~l~s~~--------~d-- 184 (288)
-+..+|... .+. + +.......++.++|.. .|
T Consensus 350 ~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e 429 (792)
T KOG1963|consen 350 GVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGE 429 (792)
T ss_pred eEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCce
Confidence 222333110 000 0 0001111244555542 22
Q ss_pred CcEEEEEEeCCceeeeeeec-cccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCC------CcccceEeec-
Q 036510 185 NTVKVWKLYNGIWKMDCFPA-LQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREG------DQWEGKVLHD- 256 (288)
Q Consensus 185 ~~i~iwd~~~~~~~~~~~~~-~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~------~~~~~~~~~~- 256 (288)
-.+|+|-.........+... ..-|...+...+|.+... ..+.++++.|+.++||-++.-. ..|....+.-
T Consensus 430 ~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~r--s~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy 507 (792)
T KOG1963|consen 430 VSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTR--SVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSY 507 (792)
T ss_pred EEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcc--cceeEEeccCCeEEEEEEecccccCcCccceEEeeeecc
Confidence 24677766544322222111 245777666666665432 1279999999999999995321 1222222222
Q ss_pred cccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510 257 FKTPVYRVSWSLTGNILAVADGNNNVTLWE 286 (288)
Q Consensus 257 ~~~~i~~~~~spdg~~l~s~~~d~~v~~w~ 286 (288)
+..++.+++|+.||+.|+++ .|++|.+||
T Consensus 508 ~k~~i~a~~fs~dGslla~s-~~~~Itiwd 536 (792)
T KOG1963|consen 508 HKTPITALCFSQDGSLLAVS-FDDTITIWD 536 (792)
T ss_pred ccCcccchhhcCCCcEEEEe-cCCEEEEec
Confidence 34689999999999877655 889999998
No 194
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=1.4e-15 Score=131.81 Aligned_cols=223 Identities=19% Similarity=0.271 Sum_probs=157.7
Q ss_pred CccccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEE-eccccCeEEEEecCCCCCCEEEEeeCCCcEE
Q 036510 4 QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKL-SGHKGAVWEVAWAHPKFGSILASCSFDGTVI 82 (288)
Q Consensus 4 ~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~ 82 (288)
.+.+.||++=|+++.|+.+|.+|+|||.|-.+.|||.- ..+.++.+ .||.+.|.++.|.|.....+++||+.|..|+
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~--~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPF--EYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecch--hcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 34578999999999999999999999999999999975 34566666 5899999999999877788999999999999
Q ss_pred EeecCCCCc-------eEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEE-----eeccCC-
Q 036510 83 IWKEGNSNE-------WIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSR-----IDQAHP- 149 (288)
Q Consensus 83 iwd~~~~~~-------~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~-----~~~~~~- 149 (288)
++|+...+. .+....+.-|...|..++-.|.. ...+-+++.||+|+-||+|+...+.+-. ....++
T Consensus 121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~-PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~ 199 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNG-PHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQ 199 (758)
T ss_pred EEecccccccccccCccchhhhhhhhhhhhhheecCCCC-CceEEEecCCcceeeecccCCccCCccccccHHHHHhchh
Confidence 999864211 11223344588889999988874 4678899999999999999753222111 011121
Q ss_pred -CCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCC--------ceee------eeeecc-ccCC----
Q 036510 150 -VGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNG--------IWKM------DCFPAL-QMHT---- 209 (288)
Q Consensus 150 -~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~--------~~~~------~~~~~~-~~h~---- 209 (288)
....++..+|..+ .+|+.|+.|-..++||.+.- .... .|+..+ -+|.
T Consensus 200 lielk~ltisp~rp-------------~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~ 266 (758)
T KOG1310|consen 200 LIELKCLTISPSRP-------------YYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQ 266 (758)
T ss_pred hheeeeeeecCCCC-------------ceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcc
Confidence 2356777788764 78999999999999995321 0000 011111 1221
Q ss_pred ----cc---eEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCC
Q 036510 210 ----DW---VRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREG 246 (288)
Q Consensus 210 ----~~---V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~ 246 (288)
.. +.-|.|+|++ ..+||+-+.+ .|.++|+...+
T Consensus 267 gn~~~~~~~~t~vtfnpNG---tElLvs~~gE-hVYlfdvn~~~ 306 (758)
T KOG1310|consen 267 GNLDRYITCCTYVTFNPNG---TELLVSWGGE-HVYLFDVNEDK 306 (758)
T ss_pred cccccceeeeEEEEECCCC---cEEEEeeCCe-EEEEEeecCCC
Confidence 12 4557899985 3456665554 79999998653
No 195
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=3.5e-14 Score=127.46 Aligned_cols=213 Identities=16% Similarity=0.200 Sum_probs=135.9
Q ss_pred CCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCC---CcEEEeecCCCCceEEeEEeecCCCceeEE
Q 036510 32 DYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFD---GTVIIWKEGNSNEWIKDHVFEDHKSSVNSI 108 (288)
Q Consensus 32 d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d---~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l 108 (288)
+..+++||.++.. ...+..|...+...+|+|+ |+.|+.++.+ ..|.+||+.++.. .....+.+ ....+
T Consensus 183 ~~~i~i~d~dg~~---~~~lt~~~~~v~~p~wSPD--G~~la~~s~~~~~~~i~i~dl~tg~~-~~l~~~~g---~~~~~ 253 (429)
T PRK01742 183 PYEVRVADYDGFN---QFIVNRSSQPLMSPAWSPD--GSKLAYVSFENKKSQLVVHDLRSGAR-KVVASFRG---HNGAP 253 (429)
T ss_pred eEEEEEECCCCCC---ceEeccCCCccccceEcCC--CCEEEEEEecCCCcEEEEEeCCCCce-EEEecCCC---ccCce
Confidence 5789999986532 4556778888999999975 8888887754 4699999876532 12222333 34578
Q ss_pred EeccCCCCeEEEE-EeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcE
Q 036510 109 DWAPHELGLCLAC-GSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTV 187 (288)
Q Consensus 109 ~~~p~~~~~~l~s-g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i 187 (288)
+|+|+ +..++. .+.+|.+.||.+...... ......+...+....|+|++. .++.++..++..
T Consensus 254 ~wSPD--G~~La~~~~~~g~~~Iy~~d~~~~~--~~~lt~~~~~~~~~~wSpDG~-------------~i~f~s~~~g~~ 316 (429)
T PRK01742 254 AFSPD--GSRLAFASSKDGVLNIYVMGANGGT--PSQLTSGAGNNTEPSWSPDGQ-------------SILFTSDRSGSP 316 (429)
T ss_pred eECCC--CCEEEEEEecCCcEEEEEEECCCCC--eEeeccCCCCcCCEEECCCCC-------------EEEEEECCCCCc
Confidence 99998 444554 457887777654322111 122334555677899999972 234455567889
Q ss_pred EEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEee
Q 036510 188 KVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWS 267 (288)
Q Consensus 188 ~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~s 267 (288)
.||++.......+. + .+.. .+..|+|++ ++|+.++.++ +.+||+..... ..+... ....++.|+
T Consensus 317 ~I~~~~~~~~~~~~---l-~~~~--~~~~~SpDG----~~ia~~~~~~-i~~~Dl~~g~~----~~lt~~-~~~~~~~~s 380 (429)
T PRK01742 317 QVYRMSASGGGASL---V-GGRG--YSAQISADG----KTLVMINGDN-VVKQDLTSGST----EVLSST-FLDESPSIS 380 (429)
T ss_pred eEEEEECCCCCeEE---e-cCCC--CCccCCCCC----CEEEEEcCCC-EEEEECCCCCe----EEecCC-CCCCCceEC
Confidence 99988643211121 1 2332 356899984 6788877765 45588764321 122111 123567899
Q ss_pred cCCCEEEEEeCCCcEEEeE
Q 036510 268 LTGNILAVADGNNNVTLWE 286 (288)
Q Consensus 268 pdg~~l~s~~~d~~v~~w~ 286 (288)
|||++|+.++.++.+++|+
T Consensus 381 PdG~~i~~~s~~g~~~~l~ 399 (429)
T PRK01742 381 PNGIMIIYSSTQGLGKVLQ 399 (429)
T ss_pred CCCCEEEEEEcCCCceEEE
Confidence 9999999999999888886
No 196
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.65 E-value=4.9e-14 Score=127.24 Aligned_cols=233 Identities=19% Similarity=0.223 Sum_probs=155.4
Q ss_pred CcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCce---EEeEEeecCCCceeEEE
Q 036510 33 YSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEW---IKDHVFEDHKSSVNSID 109 (288)
Q Consensus 33 ~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~---~~~~~~~~h~~~v~~l~ 109 (288)
+.+.+|++..+. ..-..+. -...|.+++|.+ .+..+++.|..+|+|.+||.+..... ........|..++..+.
T Consensus 222 ~~~~vW~~~~p~-~Pe~~~~-~~s~v~~~~f~p-~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vv 298 (555)
T KOG1587|consen 222 GVLLVWSLKNPN-TPELVLE-SPSEVTCLKFCP-FDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVV 298 (555)
T ss_pred ceEEEEecCCCC-CceEEEe-cCCceeEEEecc-CCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEE
Confidence 368899987552 2222333 367899999975 46889999999999999999765421 11112235889999999
Q ss_pred eccCCCCeEEEEEeCCCcEEEEeecCCCC---eeeEEeec------cCCCCeeEEEeCCCCCCCceecccccCCCceeEE
Q 036510 110 WAPHELGLCLACGSSDGNISVFTARADGG---WDTSRIDQ------AHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCS 180 (288)
Q Consensus 110 ~~p~~~~~~l~sg~~d~~i~i~d~~~~~~---~~~~~~~~------~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s 180 (288)
|-.+..+.-+++++.||.|..|+++.-.. ........ .-..++++++|.|..+ +.++.
T Consensus 299 W~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p-------------~~FiV 365 (555)
T KOG1587|consen 299 WLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDP-------------NHFIV 365 (555)
T ss_pred EeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCC-------------ceEEE
Confidence 97665444588999999999998864211 00000000 1124578888888764 66888
Q ss_pred eecCCcEEE---EEEeCCc-eeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeec
Q 036510 181 GGCDNTVKV---WKLYNGI-WKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHD 256 (288)
Q Consensus 181 ~~~d~~i~i---wd~~~~~-~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~ 256 (288)
|+.+|.|.- ++.+.+. ...+....+..|.++|.+|.++|-. ...|++++ |-+++||+......+ ......
T Consensus 366 GTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~---~k~fls~g-DW~vriWs~~~~~~P--l~~~~~ 439 (555)
T KOG1587|consen 366 GTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFY---PKNFLSVG-DWTVRIWSEDVIASP--LLSLDS 439 (555)
T ss_pred EcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCc---cceeeeec-cceeEeccccCCCCc--chhhhh
Confidence 999998764 2222221 0112233557789999999999964 45666666 889999986522111 011112
Q ss_pred cccCeEEEEeecCC-CEEEEEeCCCcEEEeEc
Q 036510 257 FKTPVYRVSWSLTG-NILAVADGNNNVTLWEE 287 (288)
Q Consensus 257 ~~~~i~~~~~spdg-~~l~s~~~d~~v~~w~~ 287 (288)
....+++++|||.- ..|++++.||++.|||+
T Consensus 440 ~~~~v~~vaWSptrpavF~~~d~~G~l~iWDL 471 (555)
T KOG1587|consen 440 SPDYVTDVAWSPTRPAVFATVDGDGNLDIWDL 471 (555)
T ss_pred ccceeeeeEEcCcCceEEEEEcCCCceehhhh
Confidence 23469999999976 67999999999999995
No 197
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=2.2e-14 Score=122.06 Aligned_cols=202 Identities=12% Similarity=0.209 Sum_probs=146.7
Q ss_pred ccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeec
Q 036510 55 KGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTAR 134 (288)
Q Consensus 55 ~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~ 134 (288)
.+.|+++.|.|. ..+|++++.|++++||.+.. +.-.+++.+.....+|.++.|.|++ ...+++++.-..++.||+.
T Consensus 213 ~~~I~sv~FHp~--~plllvaG~d~~lrifqvDG-k~N~~lqS~~l~~fPi~~a~f~p~G-~~~i~~s~rrky~ysyDle 288 (514)
T KOG2055|consen 213 HGGITSVQFHPT--APLLLVAGLDGTLRIFQVDG-KVNPKLQSIHLEKFPIQKAEFAPNG-HSVIFTSGRRKYLYSYDLE 288 (514)
T ss_pred cCCceEEEecCC--CceEEEecCCCcEEEEEecC-ccChhheeeeeccCccceeeecCCC-ceEEEecccceEEEEeecc
Confidence 577999999543 67999999999999998853 3222445555667899999999984 2267888889999999997
Q ss_pred CCCCeeeEEeeccCC-CCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceE
Q 036510 135 ADGGWDTSRIDQAHP-VGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVR 213 (288)
Q Consensus 135 ~~~~~~~~~~~~~~~-~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~ 213 (288)
+.. ...+....++. ..+..+..+|++ ++++..|..|.|.|.-..+++ .+.+++. .+.|.
T Consensus 289 ~ak-~~k~~~~~g~e~~~~e~FeVShd~--------------~fia~~G~~G~I~lLhakT~e----li~s~Ki-eG~v~ 348 (514)
T KOG2055|consen 289 TAK-VTKLKPPYGVEEKSMERFEVSHDS--------------NFIAIAGNNGHIHLLHAKTKE----LITSFKI-EGVVS 348 (514)
T ss_pred ccc-cccccCCCCcccchhheeEecCCC--------------CeEEEcccCceEEeehhhhhh----hhheeee-ccEEe
Confidence 643 22223333332 346667777776 789999999999998877653 3333332 34589
Q ss_pred EEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510 214 DVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE 286 (288)
Q Consensus 214 ~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~ 286 (288)
++.|+.++ +.|++.+.+|.|.+||++.+. +.-.-..+..-.-++++-|++|.+||+||.-|.|.|||
T Consensus 349 ~~~fsSds----k~l~~~~~~GeV~v~nl~~~~--~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd 415 (514)
T KOG2055|consen 349 DFTFSSDS----KELLASGGTGEVYVWNLRQNS--CLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYD 415 (514)
T ss_pred eEEEecCC----cEEEEEcCCceEEEEecCCcc--eEEEEeecCccceeeeeecCCCceEEeccCcceEEEec
Confidence 99999774 678889999999999998641 11111111112347889999999999999999999998
No 198
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.64 E-value=1.3e-12 Score=113.41 Aligned_cols=237 Identities=11% Similarity=0.076 Sum_probs=142.5
Q ss_pred EEEeeCCCcEEEEEeCC-CCceeeEEEeccccCeEEEEecCCCCCCEEEE-eeCCCcEEEeecCCCCceEEeEEeecCCC
Q 036510 26 LATASSDYSIKIIGVGN-NTSQHLAKLSGHKGAVWEVAWAHPKFGSILAS-CSFDGTVIIWKEGNSNEWIKDHVFEDHKS 103 (288)
Q Consensus 26 l~s~~~d~~i~lwd~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s-~s~d~~v~iwd~~~~~~~~~~~~~~~h~~ 103 (288)
+++...|+.|.+|+++. +..+.+.++. +......++++++ +++|.. +..++.|.+|++............. ...
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd--~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~ 80 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPD--KRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPG 80 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCC--CCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCC
Confidence 45567899999999953 2333455554 2345677888864 676654 4568999999986322222222222 223
Q ss_pred ceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCee-eEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEee
Q 036510 104 SVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWD-TSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGG 182 (288)
Q Consensus 104 ~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~-~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~ 182 (288)
....+.++|++ ..++++.-.++.|.+|++.+++... ..... .+......+.++|++. .++++..
T Consensus 81 ~p~~i~~~~~g-~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~~p~g~-------------~l~v~~~ 145 (330)
T PRK11028 81 SPTHISTDHQG-RFLFSASYNANCVSVSPLDKDGIPVAPIQII-EGLEGCHSANIDPDNR-------------TLWVPCL 145 (330)
T ss_pred CceEEEECCCC-CEEEEEEcCCCeEEEEEECCCCCCCCceeec-cCCCcccEeEeCCCCC-------------EEEEeeC
Confidence 45689999984 2344444458899999997543221 11111 1223456677888762 3446667
Q ss_pred cCCcEEEEEEeCCceeeee----eeccccCCcceEEEEecCCCCCCCcEEEEEeC-CCcEEEEEeecCCCcc-cceEeec
Q 036510 183 CDNTVKVWKLYNGIWKMDC----FPALQMHTDWVRDVAWAPNLGLPKSTIASASE-DGKVIIWTVAREGDQW-EGKVLHD 256 (288)
Q Consensus 183 ~d~~i~iwd~~~~~~~~~~----~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~-D~~i~iw~~~~~~~~~-~~~~~~~ 256 (288)
.++.|.+||+.+.. .+.. ....... ...+.+.|+|++ +++.+++. +++|.+|+++...... ....+..
T Consensus 146 ~~~~v~v~d~~~~g-~l~~~~~~~~~~~~g-~~p~~~~~~pdg----~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~ 219 (330)
T PRK11028 146 KEDRIRLFTLSDDG-HLVAQEPAEVTTVEG-AGPRHMVFHPNQ----QYAYCVNELNSSVDVWQLKDPHGEIECVQTLDM 219 (330)
T ss_pred CCCEEEEEEECCCC-cccccCCCceecCCC-CCCceEEECCCC----CEEEEEecCCCEEEEEEEeCCCCCEEEEEEEec
Confidence 78999999997521 1110 0011111 224678999984 56666665 9999999997421111 1111111
Q ss_pred c------ccCeEEEEeecCCCEEEEEeC-CCcEEEeEc
Q 036510 257 F------KTPVYRVSWSLTGNILAVADG-NNNVTLWEE 287 (288)
Q Consensus 257 ~------~~~i~~~~~spdg~~l~s~~~-d~~v~~w~~ 287 (288)
+ ......+.|+|||++++++.. +++|.+|++
T Consensus 220 ~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i 257 (330)
T PRK11028 220 MPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSV 257 (330)
T ss_pred CCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEE
Confidence 1 112346899999999999864 789999985
No 199
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.63 E-value=3.3e-14 Score=126.06 Aligned_cols=211 Identities=15% Similarity=0.272 Sum_probs=152.0
Q ss_pred CeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCC
Q 036510 57 AVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARAD 136 (288)
Q Consensus 57 ~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~ 136 (288)
.|+.++|.|+ |..|+-+ ++..+.+||..++. +..++++|++.|+|++|+.+ |.++|+|+.|+.+.+|..+..
T Consensus 14 ci~d~afkPD--GsqL~lA-Ag~rlliyD~ndG~---llqtLKgHKDtVycVAys~d--GkrFASG~aDK~VI~W~~klE 85 (1081)
T KOG1538|consen 14 CINDIAFKPD--GTQLILA-AGSRLLVYDTSDGT---LLQPLKGHKDTVYCVAYAKD--GKRFASGSADKSVIIWTSKLE 85 (1081)
T ss_pred chheeEECCC--CceEEEe-cCCEEEEEeCCCcc---cccccccccceEEEEEEccC--CceeccCCCceeEEEeccccc
Confidence 7899999865 5555443 34588999998776 56789999999999999987 789999999999999987643
Q ss_pred CCeeeEEeeccCCCCeeEEEeCCCCCCCc-------------------------eecccccCCCceeEEeecCCcEEEEE
Q 036510 137 GGWDTSRIDQAHPVGVTSVSWAPSTAPGA-------------------------LVGSGFLDPVQKLCSGGCDNTVKVWK 191 (288)
Q Consensus 137 ~~~~~~~~~~~~~~~v~~i~~~p~~~~~~-------------------------~~~~~~~~~~~~l~s~~~d~~i~iwd 191 (288)
+. ..-.|++.|-|+.|+|-....+ ...+.+-+++++|+-|..||+|.|=+
T Consensus 86 G~-----LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRN 160 (1081)
T KOG1538|consen 86 GI-----LKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRN 160 (1081)
T ss_pred ce-----eeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeec
Confidence 32 1235888899999888653211 11234457889999999999998865
Q ss_pred EeCCceeeeeeeccccCCcceEEEEecCCCC-CCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCC
Q 036510 192 LYNGIWKMDCFPALQMHTDWVRDVAWAPNLG-LPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTG 270 (288)
Q Consensus 192 ~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~-~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg 270 (288)
-.. +.+. .+....|..++|++|+|+|.++ .....++..-+..++.++.++-..- .+. ...+-...++.+-|+|
T Consensus 161 k~g-Eek~-~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~I--gk~--r~L~FdP~CisYf~NG 234 (1081)
T KOG1538|consen 161 KNG-EEKV-KIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQI--GKD--RALNFDPCCISYFTNG 234 (1081)
T ss_pred CCC-Ccce-EEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceee--ccc--ccCCCCchhheeccCC
Confidence 322 2111 1223356677899999999763 2346788888999999998763210 000 0112235678999999
Q ss_pred CEEEEEeCCCcEEEeE
Q 036510 271 NILAVADGNNNVTLWE 286 (288)
Q Consensus 271 ~~l~s~~~d~~v~~w~ 286 (288)
.+++.|+.|+.++++.
T Consensus 235 Ey~LiGGsdk~L~~fT 250 (1081)
T KOG1538|consen 235 EYILLGGSDKQLSLFT 250 (1081)
T ss_pred cEEEEccCCCceEEEe
Confidence 9999999999999986
No 200
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.60 E-value=1e-12 Score=107.38 Aligned_cols=238 Identities=16% Similarity=0.180 Sum_probs=143.2
Q ss_pred ceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccC--eEEEEecCCCCCCEEEEeeC-------CCcEEE
Q 036510 13 TVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGA--VWEVAWAHPKFGSILASCSF-------DGTVII 83 (288)
Q Consensus 13 ~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~--v~~~~~~~~~~~~~l~s~s~-------d~~v~i 83 (288)
....++|+.|-.-++. +.|.-.|+|+.+. .+...+-.-+... +.-+-|. .++|+-.+. -..|.|
T Consensus 7 ~~lsvs~NQD~ScFav-a~~~Gfriyn~~P--~ke~~~r~~~~~G~~~veMLfR----~N~laLVGGg~~pky~pNkviI 79 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAV-ATDTGFRIYNCDP--FKESASRQFIDGGFKIVEMLFR----SNYLALVGGGSRPKYPPNKVII 79 (346)
T ss_pred ceeEEEEccCCceEEE-EecCceEEEecCc--hhhhhhhccccCchhhhhHhhh----hceEEEecCCCCCCCCCceEEE
Confidence 3445899998876654 4555679998752 1111111111111 1222221 345543332 247899
Q ss_pred eecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCC
Q 036510 84 WKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAP 163 (288)
Q Consensus 84 wd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~ 163 (288)
||-.... +..++. ...+|.++.+.++ + ++. -.+++|++|...++-+..........+.+.+++ +|...
T Consensus 80 WDD~k~~---~i~el~-f~~~I~~V~l~r~---r-iVv-vl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~--~~~~~- 147 (346)
T KOG2111|consen 80 WDDLKER---CIIELS-FNSEIKAVKLRRD---R-IVV-VLENKIYVYTFPDNPKLLHVIETRSNPKGLCSL--CPTSN- 147 (346)
T ss_pred EecccCc---EEEEEE-eccceeeEEEcCC---e-EEE-EecCeEEEEEcCCChhheeeeecccCCCceEee--cCCCC-
Confidence 9944333 233333 4678999999886 2 222 357899999987432211111111234444444 23221
Q ss_pred CceecccccCCCceeE-EeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCc-EEEEE
Q 036510 164 GALVGSGFLDPVQKLC-SGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGK-VIIWT 241 (288)
Q Consensus 164 ~~~~~~~~~~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~-i~iw~ 241 (288)
..+|+ -|-.-|.|.|-|+..... .....+.+|.+.|.||..+-+ +++|||+|.-|| |||||
T Consensus 148 -----------k~~LafPg~k~GqvQi~dL~~~~~--~~p~~I~AH~s~Iacv~Ln~~----Gt~vATaStkGTLIRIFd 210 (346)
T KOG2111|consen 148 -----------KSLLAFPGFKTGQVQIVDLASTKP--NAPSIINAHDSDIACVALNLQ----GTLVATASTKGTLIRIFD 210 (346)
T ss_pred -----------ceEEEcCCCccceEEEEEhhhcCc--CCceEEEcccCceeEEEEcCC----ccEEEEeccCcEEEEEEE
Confidence 12333 344457899999875421 012356789999999999987 589999999886 89999
Q ss_pred eecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510 242 VAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~ 287 (288)
...+....+.+.- .-.+.|++++||||.++||++|..|||+|+.+
T Consensus 211 t~~g~~l~E~RRG-~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l 255 (346)
T KOG2111|consen 211 TEDGTLLQELRRG-VDRADIYCIAFSPNSSWLAVSSDKGTLHIFSL 255 (346)
T ss_pred cCCCcEeeeeecC-CchheEEEEEeCCCccEEEEEcCCCeEEEEEe
Confidence 8764322111110 11357999999999999999999999999974
No 201
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=5.3e-13 Score=121.63 Aligned_cols=238 Identities=18% Similarity=0.310 Sum_probs=161.4
Q ss_pred EEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCC-CEEEEeeCCCcEEEeecCCCCceEEe
Q 036510 17 VAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFG-SILASCSFDGTVIIWKEGNSNEWIKD 95 (288)
Q Consensus 17 ~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~s~d~~v~iwd~~~~~~~~~~ 95 (288)
..||+|+++++-. .+..|.+|... ++.++..+.+|..++..+.+.+.... .++.+++.||+|++||...+.. .
T Consensus 22 avfSnD~k~l~~~-~~~~V~VyS~~--Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~L---l 95 (792)
T KOG1963|consen 22 AVFSNDAKFLFLC-TGNFVKVYSTA--TGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGEL---L 95 (792)
T ss_pred cccccCCcEEEEe-eCCEEEEEecc--hHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEE---E
Confidence 3589999888754 45689999874 56788899999999999998765333 5777999999999999865431 1
Q ss_pred EEeecCCCcee-----------------------------------------------------------EEEeccCCCC
Q 036510 96 HVFEDHKSSVN-----------------------------------------------------------SIDWAPHELG 116 (288)
Q Consensus 96 ~~~~~h~~~v~-----------------------------------------------------------~l~~~p~~~~ 116 (288)
+++..+ .++. ++..++. +
T Consensus 96 kt~~~~-~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~--g 172 (792)
T KOG1963|consen 96 KTFDNN-LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNS--G 172 (792)
T ss_pred EEEecC-CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCC--c
Confidence 221110 0111 1111211 1
Q ss_pred eEEEEEeCCCcEEEEeecCCCC-eeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCC
Q 036510 117 LCLACGSSDGNISVFTARADGG-WDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNG 195 (288)
Q Consensus 117 ~~l~sg~~d~~i~i~d~~~~~~-~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 195 (288)
. +..-..+..+.+|...+... .........|...+++.+++|.+ +++++|..||.|.+|.-...
T Consensus 173 e-~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~--------------~~~Aa~d~dGrI~vw~d~~~ 237 (792)
T KOG1963|consen 173 E-FKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNE--------------RYLAAGDSDGRILVWRDFGS 237 (792)
T ss_pred e-EEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEecccc--------------ceEEEeccCCcEEEEecccc
Confidence 1 11112233455555543210 01111223466667778888876 88999999999999975441
Q ss_pred ceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEE
Q 036510 196 IWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAV 275 (288)
Q Consensus 196 ~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s 275 (288)
...-.....+.-|.+.|+++.|++++ .+|.||+..+-+.+|....++. +.+--.+++|..+.+|||+.+.+.
T Consensus 238 ~~~~~t~t~lHWH~~~V~~L~fS~~G----~~LlSGG~E~VLv~Wq~~T~~k----qfLPRLgs~I~~i~vS~ds~~~sl 309 (792)
T KOG1963|consen 238 SDDSETCTLLHWHHDEVNSLSFSSDG----AYLLSGGREGVLVLWQLETGKK----QFLPRLGSPILHIVVSPDSDLYSL 309 (792)
T ss_pred ccccccceEEEecccccceeEEecCC----ceEeecccceEEEEEeecCCCc----ccccccCCeeEEEEEcCCCCeEEE
Confidence 11112234567799999999999985 6899999999999999876532 333345789999999999999999
Q ss_pred EeCCCcEEEeE
Q 036510 276 ADGNNNVTLWE 286 (288)
Q Consensus 276 ~~~d~~v~~w~ 286 (288)
..+|+.|++-.
T Consensus 310 ~~~DNqI~li~ 320 (792)
T KOG1963|consen 310 VLEDNQIHLIK 320 (792)
T ss_pred EecCceEEEEe
Confidence 99999999876
No 202
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.58 E-value=4.5e-13 Score=110.54 Aligned_cols=254 Identities=17% Similarity=0.268 Sum_probs=168.0
Q ss_pred cceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCC---ceeeEEEecccc------------CeEEEEecCCCCCCEEEEee
Q 036510 12 DTVHDVAMDYYGKRLATASSDYSIKIIGVGNNT---SQHLAKLSGHKG------------AVWEVAWAHPKFGSILASCS 76 (288)
Q Consensus 12 ~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~---~~~~~~~~~h~~------------~v~~~~~~~~~~~~~l~s~s 76 (288)
+-+.+|.|+.+|.+|++|..+|.|-++.-+... ......++.|.. .|..++|.++.....|+...
T Consensus 26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlst 105 (433)
T KOG1354|consen 26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLST 105 (433)
T ss_pred cceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEec
Confidence 567788999999999999999999998653211 112223334442 36789998777778899999
Q ss_pred CCCcEEEeecCCCCc--------------------------------eEEeEEe-ecCCCceeEEEeccCCCCeEEEEEe
Q 036510 77 FDGTVIIWKEGNSNE--------------------------------WIKDHVF-EDHKSSVNSIDWAPHELGLCLACGS 123 (288)
Q Consensus 77 ~d~~v~iwd~~~~~~--------------------------------~~~~~~~-~~h~~~v~~l~~~p~~~~~~l~sg~ 123 (288)
.|++|++|-+...+. ..+.+.+ ..|..-|++++++.| +..++++
T Consensus 106 NdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD--~Et~lSA- 182 (433)
T KOG1354|consen 106 NDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSD--KETFLSA- 182 (433)
T ss_pred CCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCc--cceEeec-
Confidence 999999997643210 0011112 258888999999987 4445555
Q ss_pred CCCcEEEEeecC-CCCeeeEEeeccC-----CCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCce
Q 036510 124 SDGNISVFTARA-DGGWDTSRIDQAH-----PVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIW 197 (288)
Q Consensus 124 ~d~~i~i~d~~~-~~~~~~~~~~~~~-----~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 197 (288)
.|=.|.+|.+.- ++.++.+.+ +.+ +.-|++..|+|..- ++++-++..|+|+|-|++...-
T Consensus 183 DdLRINLWnlei~d~sFnIVDI-KP~nmEeLteVITsaEFhp~~c-------------n~f~YSSSKGtIrLcDmR~~aL 248 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQSFNIVDI-KPANMEELTEVITSAEFHPHHC-------------NVFVYSSSKGTIRLCDMRQSAL 248 (433)
T ss_pred cceeeeeccccccCCceeEEEc-cccCHHHHHHHHhhhccCHhHc-------------cEEEEecCCCcEEEeechhhhh
Confidence 566899999864 334443322 222 33477888888752 5677778899999999984210
Q ss_pred -----e-eee------eeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeecc--------
Q 036510 198 -----K-MDC------FPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDF-------- 257 (288)
Q Consensus 198 -----~-~~~------~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~-------- 257 (288)
+ ++. ..-+..-...|.+|.|++++ .|+++-. -.+|++||+.....+.+-.++++.
T Consensus 249 Cd~hsKlfEepedp~~rsffseiIsSISDvKFs~sG----ryilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc~l 323 (433)
T KOG1354|consen 249 CDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSG----RYILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSL 323 (433)
T ss_pred hcchhhhhccccCCcchhhHHHHhhhhhceEEccCC----cEEEEec-cceeEEEeccccCCcceEEeehHhHHHHHHHH
Confidence 0 000 00122334468999999974 5675432 269999999765444333334332
Q ss_pred -c-cCe---EEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510 258 -K-TPV---YRVSWSLTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 258 -~-~~i---~~~~~spdg~~l~s~~~d~~v~~w~~ 287 (288)
+ ..| ..++||-++.++++|+-++.+++++.
T Consensus 324 YEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~ 358 (433)
T KOG1354|consen 324 YENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNL 358 (433)
T ss_pred hhccchhheeEEEEcCCcceEecccccceEEEecC
Confidence 1 122 47899999999999999999999983
No 203
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.57 E-value=3.9e-15 Score=134.61 Aligned_cols=208 Identities=19% Similarity=0.285 Sum_probs=139.7
Q ss_pred eEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCc
Q 036510 48 LAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGN 127 (288)
Q Consensus 48 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~ 127 (288)
+..|.||..+|++..|.+. |.++++|++|..||||.+.++. +.....+|.+.|+.++.+.. ...+++++.|..
T Consensus 183 ikrLlgH~naVyca~fDrt--g~~Iitgsdd~lvKiwS~et~~---~lAs~rGhs~ditdlavs~~--n~~iaaaS~D~v 255 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRT--GRYIITGSDDRLVKIWSMETAR---CLASCRGHSGDITDLAVSSN--NTMIAAASNDKV 255 (1113)
T ss_pred HHHHHhhhhheeeeeeccc--cceEeecCccceeeeeeccchh---hhccCCCCccccchhccchh--hhhhhhcccCce
Confidence 4556799999999998754 9999999999999999987765 44567899999999998765 456889999999
Q ss_pred EEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccc-
Q 036510 128 ISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQ- 206 (288)
Q Consensus 128 i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~- 206 (288)
|++|-++.+. ++.++.+|++.|++|+|+|.. +.+.|+++++||.+-.... .....++
T Consensus 256 IrvWrl~~~~---pvsvLrghtgavtaiafsP~~------------------sss~dgt~~~wd~r~~~~~-y~prp~~~ 313 (1113)
T KOG0644|consen 256 IRVWRLPDGA---PVSVLRGHTGAVTAIAFSPRA------------------SSSDDGTCRIWDARLEPRI-YVPRPLKF 313 (1113)
T ss_pred EEEEecCCCc---hHHHHhccccceeeeccCccc------------------cCCCCCceEeccccccccc-cCCCCCCc
Confidence 9999987653 445678999999999999953 6788999999998611000 0000000
Q ss_pred cCCcceEEEEecCCC---------------------------------CCCCcEEEEEeCCCcEEEEEeecCCCcccceE
Q 036510 207 MHTDWVRDVAWAPNL---------------------------------GLPKSTIASASEDGKVIIWTVAREGDQWEGKV 253 (288)
Q Consensus 207 ~h~~~V~~v~~sp~~---------------------------------~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~ 253 (288)
.-.+-+.++.|..++ +-...+.+++=.+-.+++|++...+ ..-.
T Consensus 314 ~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~---l~H~ 390 (1113)
T KOG0644|consen 314 TEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQ---LLHN 390 (1113)
T ss_pred ccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccch---hhhh
Confidence 000112222222211 0001223333334445666655321 1112
Q ss_pred eeccccCeEEEEeecCC-CEEEEEeCCCcEEEeEc
Q 036510 254 LHDFKTPVYRVSWSLTG-NILAVADGNNNVTLWEE 287 (288)
Q Consensus 254 ~~~~~~~i~~~~~spdg-~~l~s~~~d~~v~~w~~ 287 (288)
..+|...++.+.+||=. .+..+++.||++.|||+
T Consensus 391 l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi 425 (1113)
T KOG0644|consen 391 LMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDI 425 (1113)
T ss_pred hcccccceeeeeecCCCcHhhhhccCCCceEeeec
Confidence 23556788999999955 55678889999999995
No 204
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.57 E-value=2.3e-13 Score=108.56 Aligned_cols=209 Identities=19% Similarity=0.275 Sum_probs=142.0
Q ss_pred ccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceee----------------------------------------
Q 036510 9 GHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHL---------------------------------------- 48 (288)
Q Consensus 9 ~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~---------------------------------------- 48 (288)
.|...|+.+.--|. ..|.+=+.|..+.+|++.......+
T Consensus 54 ~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D 132 (323)
T KOG0322|consen 54 FGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQD 132 (323)
T ss_pred hccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhc
Confidence 45677777776665 4688888899999988753111000
Q ss_pred -------EEE----eccccCeEEEEecCCCCCC-EEEEeeCCCcEEEeecCCCCceE-------EeEEeecCCCceeEEE
Q 036510 49 -------AKL----SGHKGAVWEVAWAHPKFGS-ILASCSFDGTVIIWKEGNSNEWI-------KDHVFEDHKSSVNSID 109 (288)
Q Consensus 49 -------~~~----~~h~~~v~~~~~~~~~~~~-~l~s~s~d~~v~iwd~~~~~~~~-------~~~~~~~h~~~v~~l~ 109 (288)
... .+..+.+.+..+.+..... +++.|-.+|.|-+||+..+...+ -......|.++|.+++
T Consensus 133 ~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsld 212 (323)
T KOG0322|consen 133 GGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLD 212 (323)
T ss_pred cCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeee
Confidence 000 0223445555544332122 45677789999999997753211 1122346999999999
Q ss_pred eccCCCCeEEEEEeCCCcEEEEeecCC-CCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEE
Q 036510 110 WAPHELGLCLACGSSDGNISVFTARAD-GGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVK 188 (288)
Q Consensus 110 ~~p~~~~~~l~sg~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~ 188 (288)
+.+.-+. =++|+.+..+..|++... +.++.....+-.+.+|..+...|++ +.++|+++|+.||
T Consensus 213 yas~~~r--Gisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~--------------KIlATAGWD~RiR 276 (323)
T KOG0322|consen 213 YASSCDR--GISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDG--------------KILATAGWDHRIR 276 (323)
T ss_pred echhhcC--CcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCC--------------cEEeecccCCcEE
Confidence 9875322 267888889999998754 3333322222223356667777776 7899999999999
Q ss_pred EEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEe
Q 036510 189 VWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTV 242 (288)
Q Consensus 189 iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~ 242 (288)
+|..++. ..+..++-|+..|++|+|+|+. ..+|++|.|..|-+|++
T Consensus 277 Vyswrtl----~pLAVLkyHsagvn~vAfspd~----~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 277 VYSWRTL----NPLAVLKYHSAGVNAVAFSPDC----ELMAAASKDARISLWKL 322 (323)
T ss_pred EEEeccC----CchhhhhhhhcceeEEEeCCCC----chhhhccCCceEEeeec
Confidence 9998875 3456778899999999999984 47999999999999986
No 205
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.57 E-value=4.2e-14 Score=122.54 Aligned_cols=232 Identities=17% Similarity=0.210 Sum_probs=145.1
Q ss_pred ccccceEEEEEcCCCCEEEEeeCCCcEEEE-EeCCCCceeeEEEeccccCeEEEEe------cCCCCCCEEEEeeCCCcE
Q 036510 9 GHEDTVHDVAMDYYGKRLATASSDYSIKII-GVGNNTSQHLAKLSGHKGAVWEVAW------AHPKFGSILASCSFDGTV 81 (288)
Q Consensus 9 ~h~~~v~~~~~s~~g~~l~s~~~d~~i~lw-d~~~~~~~~~~~~~~h~~~v~~~~~------~~~~~~~~l~s~s~d~~v 81 (288)
.|...|.++.|+.....+. .+.|..+.+| ++.....+. +.-..+.+....+ -.....+.|+.++.||.+
T Consensus 12 r~~e~vc~v~w~~~eei~~-~~dDh~~~~~~~~~~~s~~~---~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf 87 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYF-VSDDHQIFKWSDVSRDSVEV---AKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRF 87 (737)
T ss_pred ccceeEEeecccccceEEE-eccCceEEEeecccchhhhh---hhCCcccCCccccccccccCCCCCcceEEEEcCCceE
Confidence 5777787888886665444 5555555555 453322111 1111122211111 011124689999999999
Q ss_pred EEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCC
Q 036510 82 IIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPST 161 (288)
Q Consensus 82 ~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~ 161 (288)
.|-+- .+. .-+.+..|.+.+.|-+|+|++. -|++.+.||.|++|.-. + +.....-....+|.|+.|.|+.
T Consensus 88 ~il~k-~~r---VE~sv~AH~~A~~~gRW~~dGt--gLlt~GEDG~iKiWSrs-G---MLRStl~Q~~~~v~c~~W~p~S 157 (737)
T KOG1524|consen 88 VILNK-SAR---VERSISAHAAAISSGRWSPDGA--GLLTAGEDGVIKIWSRS-G---MLRSTVVQNEESIRCARWAPNS 157 (737)
T ss_pred EEecc-cch---hhhhhhhhhhhhhhcccCCCCc--eeeeecCCceEEEEecc-c---hHHHHHhhcCceeEEEEECCCC
Confidence 98743 222 2245678999999999999954 47888999999999632 1 1111111234569999999987
Q ss_pred CCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEE
Q 036510 162 APGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWT 241 (288)
Q Consensus 162 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~ 241 (288)
. +.+.+.+ +.+.|=-+..+ .-+-..+.|++-|.+++|+|.. .++++|+.|-..+|||
T Consensus 158 ~-------------~vl~c~g--~h~~IKpL~~n----~k~i~WkAHDGiiL~~~W~~~s----~lI~sgGED~kfKvWD 214 (737)
T KOG1524|consen 158 N-------------SIVFCQG--GHISIKPLAAN----SKIIRWRAHDGLVLSLSWSTQS----NIIASGGEDFRFKIWD 214 (737)
T ss_pred C-------------ceEEecC--CeEEEeecccc----cceeEEeccCcEEEEeecCccc----cceeecCCceeEEeec
Confidence 3 3344333 33443222221 1123457899999999999975 6899999999999999
Q ss_pred eecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEE
Q 036510 242 VAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVT 283 (288)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~ 283 (288)
..-. ..... ..|.-+|++++|+|| +.++++|. ++.|
T Consensus 215 ~~G~--~Lf~S--~~~ey~ITSva~npd-~~~~v~S~-nt~R 250 (737)
T KOG1524|consen 215 AQGA--NLFTS--AAEEYAITSVAFNPE-KDYLLWSY-NTAR 250 (737)
T ss_pred ccCc--ccccC--Chhccceeeeeeccc-cceeeeee-eeee
Confidence 7532 11111 234468999999999 88888865 4444
No 206
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.57 E-value=2.6e-12 Score=120.89 Aligned_cols=257 Identities=16% Similarity=0.138 Sum_probs=160.0
Q ss_pred ccccceEEEEEcC-CCCEEEEeeCCCcEEEEEeCC-----CCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEE
Q 036510 9 GHEDTVHDVAMDY-YGKRLATASSDYSIKIIGVGN-----NTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVI 82 (288)
Q Consensus 9 ~h~~~v~~~~~s~-~g~~l~s~~~d~~i~lwd~~~-----~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~ 82 (288)
-|...|..++.++ .+.+++|||.||+|++|+... ...+...++..-...+..+..-+ .++.+|.++.||.|+
T Consensus 1046 Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~--~~~~~Av~t~DG~v~ 1123 (1431)
T KOG1240|consen 1046 EHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCG--NGDQFAVSTKDGSVR 1123 (1431)
T ss_pred hccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEecc--CCCeEEEEcCCCeEE
Confidence 4677788888765 569999999999999999742 11222334433345566666543 378999999999999
Q ss_pred EeecCCCC--ce--EEeEEeecC-CCceeE-EEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEE
Q 036510 83 IWKEGNSN--EW--IKDHVFEDH-KSSVNS-IDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVS 156 (288)
Q Consensus 83 iwd~~~~~--~~--~~~~~~~~h-~~~v~~-l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~ 156 (288)
+.++..-+ .. ...+....+ .+.+.. -++........++.+..-+.|..||++........+....| +.|+++.
T Consensus 1124 ~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~h-G~vTSi~ 1202 (1431)
T KOG1240|consen 1124 VLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRH-GLVTSIV 1202 (1431)
T ss_pred EEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccc-cceeEEE
Confidence 99886521 11 111111111 122333 33333222235677777788999999865322111211123 4699999
Q ss_pred eCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeecc-ccCCcceEEEEecCCCCCCCcEEEEEe--C
Q 036510 157 WAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPAL-QMHTDWVRDVAWAPNLGLPKSTIASAS--E 233 (288)
Q Consensus 157 ~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~h~~~V~~v~~sp~~~~~~~~l~s~s--~ 233 (288)
-+|.+ .-++.|...|.+-+||++-+. .+.+. -.+..+++.|..+|.... .+..++++ .
T Consensus 1203 idp~~--------------~WlviGts~G~l~lWDLRF~~----~i~sw~~P~~~~i~~v~~~~~~~~-~S~~vs~~~~~ 1263 (1431)
T KOG1240|consen 1203 IDPWC--------------NWLVIGTSRGQLVLWDLRFRV----PILSWEHPARAPIRHVWLCPTYPQ-ESVSVSAGSSS 1263 (1431)
T ss_pred ecCCc--------------eEEEEecCCceEEEEEeecCc----eeecccCcccCCcceEEeeccCCC-CceEEEecccC
Confidence 99987 779999999999999998762 22232 234467888888886421 14555554 4
Q ss_pred CCcEEEEEeecCCCcc---cc--e-------Eee----ccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510 234 DGKVIIWTVAREGDQW---EG--K-------VLH----DFKTPVYRVSWSLTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 234 D~~i~iw~~~~~~~~~---~~--~-------~~~----~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~ 287 (288)
-+.|.+|+........ .. . +.. .+.-+...+.+..-+..+.+|+.|..||.||.
T Consensus 1264 ~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~ 1333 (1431)
T KOG1240|consen 1264 NNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDP 1333 (1431)
T ss_pred CCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccC
Confidence 7789999987642110 00 0 000 11112345566666778999999999999995
No 207
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=7.3e-13 Score=104.61 Aligned_cols=198 Identities=17% Similarity=0.202 Sum_probs=127.3
Q ss_pred eEEEEecCCCCCCEEEEeeCCCcEEEeecCCC-----Cc--eEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEE
Q 036510 58 VWEVAWAHPKFGSILASCSFDGTVIIWKEGNS-----NE--WIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISV 130 (288)
Q Consensus 58 v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~-----~~--~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i 130 (288)
|..-+|+++ +++|+.|..+|+|.+..+... .+ ...+....+|.++|+.++|+-+ .|++|+ ||.|+=
T Consensus 13 vf~qa~sp~--~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~----~Lls~g-dG~V~g 85 (325)
T KOG0649|consen 13 VFAQAISPS--KQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD----FLLSGG-DGLVYG 85 (325)
T ss_pred HHHHhhCCc--ceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh----heeecc-CceEEE
Confidence 444567765 789999999999999987431 11 1122334579999999999843 455554 599998
Q ss_pred EeecCCCC---eee-EE-eeccCC-----CCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeee
Q 036510 131 FTARADGG---WDT-SR-IDQAHP-----VGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMD 200 (288)
Q Consensus 131 ~d~~~~~~---~~~-~~-~~~~~~-----~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 200 (288)
|..++... ..+ +. ....|. ..|.++...|.. +-+..++.|+.+..||+++| +
T Consensus 86 w~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~e--------------nSi~~AgGD~~~y~~dlE~G----~ 147 (325)
T KOG0649|consen 86 WEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSE--------------NSILFAGGDGVIYQVDLEDG----R 147 (325)
T ss_pred eeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCC--------------CcEEEecCCeEEEEEEecCC----E
Confidence 87764321 000 00 000111 235666666654 44666668999999999998 4
Q ss_pred eeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEee-------ccccCeEEEEeecCCCEE
Q 036510 201 CFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLH-------DFKTPVYRVSWSLTGNIL 273 (288)
Q Consensus 201 ~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~-------~~~~~i~~~~~spdg~~l 273 (288)
...+++||+++|.+|.--.. ...+.||+.||++|+||++..+........+ ..+.+|.+++- +...+
T Consensus 148 i~r~~rGHtDYvH~vv~R~~----~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWl 221 (325)
T KOG0649|consen 148 IQREYRGHTDYVHSVVGRNA----NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWL 221 (325)
T ss_pred EEEEEcCCcceeeeeeeccc----CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceE
Confidence 55678999999999986332 2469999999999999998654221111111 11345666663 55566
Q ss_pred EEEeCCCcEEEeEc
Q 036510 274 AVADGNNNVTLWEE 287 (288)
Q Consensus 274 ~s~~~d~~v~~w~~ 287 (288)
+.|+. ..+.||.+
T Consensus 222 vCGgG-p~lslwhL 234 (325)
T KOG0649|consen 222 VCGGG-PKLSLWHL 234 (325)
T ss_pred EecCC-CceeEEec
Confidence 66654 56778864
No 208
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=2.7e-13 Score=114.31 Aligned_cols=203 Identities=17% Similarity=0.152 Sum_probs=134.8
Q ss_pred EEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCC
Q 036510 59 WEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGG 138 (288)
Q Consensus 59 ~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~ 138 (288)
..++|+++ |..+++++.||++|||+..+-. .......|...|.++.|+|| ++.+++-+.| ..++|+.+++..
T Consensus 148 k~vaf~~~--gs~latgg~dg~lRv~~~Ps~~---t~l~e~~~~~eV~DL~FS~d--gk~lasig~d-~~~VW~~~~g~~ 219 (398)
T KOG0771|consen 148 KVVAFNGD--GSKLATGGTDGTLRVWEWPSML---TILEEIAHHAEVKDLDFSPD--GKFLASIGAD-SARVWSVNTGAA 219 (398)
T ss_pred eEEEEcCC--CCEeeeccccceEEEEecCcch---hhhhhHhhcCccccceeCCC--CcEEEEecCC-ceEEEEeccCch
Confidence 45788764 8999999999999999943322 12234568889999999998 7788888888 899999988754
Q ss_pred eeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCce--eeeeeeccccCCcceEEEE
Q 036510 139 WDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIW--KMDCFPALQMHTDWVRDVA 216 (288)
Q Consensus 139 ~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~h~~~V~~v~ 216 (288)
++.... ..-+.....+.|+-+.....+ ..++.-..-+.|+.||+..-.+ -.+..+.+..+ ..|.+++
T Consensus 220 ~a~~t~-~~k~~~~~~cRF~~d~~~~~l---------~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~-~siSsl~ 288 (398)
T KOG0771|consen 220 LARKTP-FSKDEMFSSCRFSVDNAQETL---------RLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRF-KSISSLA 288 (398)
T ss_pred hhhcCC-cccchhhhhceecccCCCceE---------EEEEecCCCCceeEEEeeeeccccccchhhhhhcc-CcceeEE
Confidence 433221 122223445666555422111 1222333344566766642111 00111112222 3589999
Q ss_pred ecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEe-eccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510 217 WAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVL-HDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 217 ~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~-~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~ 287 (288)
.+++ ++++|-|+.||.|-|++..+.+- ...+ +-|..-|+.+.|+||-+++++.+.|.+..|..+
T Consensus 289 VS~d----Gkf~AlGT~dGsVai~~~~~lq~---~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l 353 (398)
T KOG0771|consen 289 VSDD----GKFLALGTMDGSVAIYDAKSLQR---LQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKL 353 (398)
T ss_pred EcCC----CcEEEEeccCCcEEEEEeceeee---eEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEE
Confidence 9998 47899999999999999875421 1222 235568999999999999999999999888764
No 209
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=6.7e-13 Score=111.28 Aligned_cols=227 Identities=13% Similarity=0.162 Sum_probs=152.1
Q ss_pred cccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccc---cCeEEEEecCCCCCCEEEEeeCCCcEEEe
Q 036510 8 TGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHK---GAVWEVAWAHPKFGSILASCSFDGTVIIW 84 (288)
Q Consensus 8 ~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~~~l~s~s~d~~v~iw 84 (288)
..|..-|+++.|+...+.|.||+.+++|.+.|+... +.+..+ .|. +.|+.+..+|. .++|++.+.++.|.+|
T Consensus 102 ~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~--qsi~V~-~~~~~~~~VY~m~~~P~--DN~~~~~t~~~~V~~~ 176 (609)
T KOG4227|consen 102 HPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETK--QSIYVA-NENNNRGDVYHMDQHPT--DNTLIVVTRAKLVSFI 176 (609)
T ss_pred CccccceEEEEEccCCeeEecCCCcceeEeeecccc--eeeeee-cccCcccceeecccCCC--CceEEEEecCceEEEE
Confidence 356789999999998999999999999999998543 334333 344 58999998653 6899999999999999
Q ss_pred ecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeee-EEeeccCCC---CeeEEEeCCC
Q 036510 85 KEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDT-SRIDQAHPV---GVTSVSWAPS 160 (288)
Q Consensus 85 d~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~-~~~~~~~~~---~v~~i~~~p~ 160 (288)
|.+.....+....+........++.|+|.. ..++++.+..+-+.+||.+....-.. .....+-+. .-...-|+|.
T Consensus 177 D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~-P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~ 255 (609)
T KOG4227|consen 177 DNRDRQNPISLVLPANSGKNFYTAEFHPET-PALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPS 255 (609)
T ss_pred eccCCCCCCceeeecCCCccceeeeecCCC-ceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCC
Confidence 987643222222233344567889999975 67788888888899999985432000 000001111 1123445555
Q ss_pred CCCCc---------ee-------------------------cccccCCCceeEEeecCCcEEEEEEeCC----c------
Q 036510 161 TAPGA---------LV-------------------------GSGFLDPVQKLCSGGCDNTVKVWKLYNG----I------ 196 (288)
Q Consensus 161 ~~~~~---------~~-------------------------~~~~~~~~~~l~s~~~d~~i~iwd~~~~----~------ 196 (288)
+.... ++ ..-.+.+...++||+.+-.|.||.+-.. .
T Consensus 256 G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~ 335 (609)
T KOG4227|consen 256 GNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGH 335 (609)
T ss_pred CCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCccccCc
Confidence 42100 00 0011223345899999999999998321 0
Q ss_pred ---------eeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeec
Q 036510 197 ---------WKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAR 244 (288)
Q Consensus 197 ---------~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~ 244 (288)
...+....++||.+-++-|.|+|. ..+|++.+-.+.++||....
T Consensus 336 ~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H----~~~l~SSGVE~~~KlWS~~r 388 (609)
T KOG4227|consen 336 DEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQH----NNLLVSSGVENSFKLWSDHR 388 (609)
T ss_pred chhhCchhheecceeEEEecccccccceeecCC----cceEeccchhhheecccccc
Confidence 011234467899999999999997 46888888899999998754
No 210
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.49 E-value=4.5e-12 Score=101.23 Aligned_cols=109 Identities=21% Similarity=0.438 Sum_probs=79.1
Q ss_pred CCCeeEEEeCCCCCCCceecccccCCCce-eEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcE
Q 036510 149 PVGVTSVSWAPSTAPGALVGSGFLDPVQK-LCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKST 227 (288)
Q Consensus 149 ~~~v~~i~~~p~~~~~~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~ 227 (288)
...|.+++|+|++. .+ ++.|..++.|.|||++. +.+..+ +...++.|.|+|++ ++
T Consensus 59 ~~~I~~~~WsP~g~-------------~favi~g~~~~~v~lyd~~~-----~~i~~~--~~~~~n~i~wsP~G----~~ 114 (194)
T PF08662_consen 59 EGPIHDVAWSPNGN-------------EFAVIYGSMPAKVTLYDVKG-----KKIFSF--GTQPRNTISWSPDG----RF 114 (194)
T ss_pred CCceEEEEECcCCC-------------EEEEEEccCCcccEEEcCcc-----cEeEee--cCCCceEEEECCCC----CE
Confidence 34699999999973 22 34555678999999963 233333 34567899999984 78
Q ss_pred EEEEeCC---CcEEEEEeecCCCcccceEeecc-ccCeEEEEeecCCCEEEEEeC------CCcEEEeEc
Q 036510 228 IASASED---GKVIIWTVAREGDQWEGKVLHDF-KTPVYRVSWSLTGNILAVADG------NNNVTLWEE 287 (288)
Q Consensus 228 l~s~s~D---~~i~iw~~~~~~~~~~~~~~~~~-~~~i~~~~~spdg~~l~s~~~------d~~v~~w~~ 287 (288)
||.|+.+ |.|.+||.+.. +.+... ...++.++|+|||++|+++.. |+.++||+.
T Consensus 115 l~~~g~~n~~G~l~~wd~~~~------~~i~~~~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~ 178 (194)
T PF08662_consen 115 LVLAGFGNLNGDLEFWDVRKK------KKISTFEHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSF 178 (194)
T ss_pred EEEEEccCCCcEEEEEECCCC------EEeeccccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEe
Confidence 8888754 56999998742 223222 235789999999999999974 788999984
No 211
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.49 E-value=1.4e-12 Score=113.30 Aligned_cols=163 Identities=21% Similarity=0.264 Sum_probs=104.7
Q ss_pred cceEEEEEcCCC-CEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecC-CC
Q 036510 12 DTVHDVAMDYYG-KRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEG-NS 89 (288)
Q Consensus 12 ~~v~~~~~s~~g-~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~-~~ 89 (288)
..|++++|-|.+ .+++.+-.++.+.+||... ........|....++..|... .|-.. +.
T Consensus 220 tsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~------------~~~~t~p~~~~~k~~~~f~i~-------t~ksk~~r 280 (636)
T KOG2394|consen 220 SSVTCIKWVPGSDSLFLVAHASGNLYLYDKEI------------VCGATAPSYQALKDGDQFAIL-------TSKSKKTR 280 (636)
T ss_pred cceEEEEEEeCCCceEEEEEecCceEEeeccc------------cccCCCCcccccCCCCeeEEe-------eeeccccC
Confidence 567788887743 5566666777777776521 111122222222224444321 11100 00
Q ss_pred CceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecc
Q 036510 90 NEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGS 169 (288)
Q Consensus 90 ~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~ 169 (288)
+.. ....+ -.+.|+..+|+|| +.+||+.++||.+||||.....- ...++.-=....|+.|+||+
T Consensus 281 NPv-~~w~~--~~g~in~f~FS~D--G~~LA~VSqDGfLRvF~fdt~eL---lg~mkSYFGGLLCvcWSPDG-------- 344 (636)
T KOG2394|consen 281 NPV-ARWHI--GEGSINEFAFSPD--GKYLATVSQDGFLRIFDFDTQEL---LGVMKSYFGGLLCVCWSPDG-------- 344 (636)
T ss_pred Ccc-ceeEe--ccccccceeEcCC--CceEEEEecCceEEEeeccHHHH---HHHHHhhccceEEEEEcCCc--------
Confidence 111 11112 2358899999997 78999999999999999875321 11222223568899999998
Q ss_pred cccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecC
Q 036510 170 GFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAP 219 (288)
Q Consensus 170 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp 219 (288)
+++++|++|..|.+|.+.++ +.+.-=.+|++||..|+|.|
T Consensus 345 ------KyIvtGGEDDLVtVwSf~er----RVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 345 ------KYIVTGGEDDLVTVWSFEER----RVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred ------cEEEecCCcceEEEEEeccc----eEEEeccccccceeeEeecc
Confidence 89999999999999998765 44544579999999999998
No 212
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=6e-13 Score=114.23 Aligned_cols=259 Identities=18% Similarity=0.217 Sum_probs=177.3
Q ss_pred cccccccceEEEEEcCC--CCEEEEeeCCCcEEEEEeCCCC-ceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEE
Q 036510 6 IETGHEDTVHDVAMDYY--GKRLATASSDYSIKIIGVGNNT-SQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVI 82 (288)
Q Consensus 6 ~~~~h~~~v~~~~~s~~--g~~l~s~~~d~~i~lwd~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~ 82 (288)
...||..-|.+.+|-|. -+-|++++.||-+++-.+.... .+....+..|.++|+-++.-|. ....|.|++.|+.+.
T Consensus 180 f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~-sp~~f~S~geD~~v~ 258 (559)
T KOG1334|consen 180 FESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPD-SPKPFLSCGEDAVVF 258 (559)
T ss_pred cccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCC-CCCccccccccccee
Confidence 45699999999999874 3679999999999998764322 2225567789999999987653 578999999999999
Q ss_pred EeecCCCCceEEeEEeecCCC---ceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCe------e---eEEeeccCCC
Q 036510 83 IWKEGNSNEWIKDHVFEDHKS---SVNSIDWAPHELGLCLACGSSDGNISVFTARADGGW------D---TSRIDQAHPV 150 (288)
Q Consensus 83 iwd~~~~~~~~~~~~~~~h~~---~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~------~---~~~~~~~~~~ 150 (288)
-.|++...........+.+.. ..++++.+|.+ ..++++|+.|..+++||.+.-..- . +.+.....+.
T Consensus 259 ~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~n-t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v 337 (559)
T KOG1334|consen 259 HIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRN-TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPV 337 (559)
T ss_pred eeeeccCCccceeeeeccCCccceeeeeEecCCCC-ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcc
Confidence 999876543222222233333 46788888875 457899999999999998752110 1 1111223456
Q ss_pred CeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCc---------eeeeeeeccccCCc--ceEEEEecC
Q 036510 151 GVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGI---------WKMDCFPALQMHTD--WVRDVAWAP 219 (288)
Q Consensus 151 ~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~---------~~~~~~~~~~~h~~--~V~~v~~sp 219 (288)
.|+++.++.++. .+|++- .|..|.++.-.-+. ...-..+.++||.+ .|..|.|--
T Consensus 338 ~ITgl~Ysh~~s-------------ElLaSY-nDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfG 403 (559)
T KOG1334|consen 338 NITGLVYSHDGS-------------ELLASY-NDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFG 403 (559)
T ss_pred cceeEEecCCcc-------------ceeeee-cccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeecc
Confidence 788998886652 344444 46677777432110 00112223688977 488887754
Q ss_pred CCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510 220 NLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE 286 (288)
Q Consensus 220 ~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~ 286 (288)
-. ..+++|||+=|.|.||+-...+. ...+.+-...|+++.=+|--..||+.+.|..|+||-
T Consensus 404 Pr---sEyVvSGSDCGhIFiW~K~t~ei---i~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWT 464 (559)
T KOG1334|consen 404 PR---SEYVVSGSDCGHIFIWDKKTGEI---IRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWT 464 (559)
T ss_pred Cc---cceEEecCccceEEEEecchhHH---HHHhhcccceEeccCCCCCCchhhccCCccceeeec
Confidence 21 36899999999999998543211 122222233789999999999999999999999995
No 213
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.46 E-value=1.6e-11 Score=107.60 Aligned_cols=243 Identities=14% Similarity=0.212 Sum_probs=152.7
Q ss_pred ccccceEEEEEcCCCCEE-EEeeCCCcEEEEEeCCCCcee----------e----------------EEEeccccC----
Q 036510 9 GHEDTVHDVAMDYYGKRL-ATASSDYSIKIIGVGNNTSQH----------L----------------AKLSGHKGA---- 57 (288)
Q Consensus 9 ~h~~~v~~~~~s~~g~~l-~s~~~d~~i~lwd~~~~~~~~----------~----------------~~~~~h~~~---- 57 (288)
.|...-+.++.+|||+|+ ++|-+-..|++||+..-..+. + +++.-|...
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy 128 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY 128 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence 567777889999999985 556678899999985321100 0 111111100
Q ss_pred -------eEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEE
Q 036510 58 -------VWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISV 130 (288)
Q Consensus 58 -------v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i 130 (288)
-.+++++.+ ..-|..++....|.-.++..+. + ...+..-...++++..++- ..++++|+.+|.+..
T Consensus 129 ~~RIP~~GRDm~y~~~--scDly~~gsg~evYRlNLEqGr-f--L~P~~~~~~~lN~v~in~~--hgLla~Gt~~g~VEf 201 (703)
T KOG2321|consen 129 RTRIPKFGRDMKYHKP--SCDLYLVGSGSEVYRLNLEQGR-F--LNPFETDSGELNVVSINEE--HGLLACGTEDGVVEF 201 (703)
T ss_pred eeecCcCCccccccCC--CccEEEeecCcceEEEEccccc-c--ccccccccccceeeeecCc--cceEEecccCceEEE
Confidence 123444332 2334445555666666776543 2 2234444578999999986 567999999999999
Q ss_pred EeecCCCCeeeEEee---ccCCC-----CeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeee
Q 036510 131 FTARADGGWDTSRID---QAHPV-----GVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCF 202 (288)
Q Consensus 131 ~d~~~~~~~~~~~~~---~~~~~-----~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 202 (288)
||.|........... ..|+. .|+++.|+-++ -.++.|..+|.+.|||++... .+
T Consensus 202 wDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~g--------------L~~aVGts~G~v~iyDLRa~~----pl 263 (703)
T KOG2321|consen 202 WDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDG--------------LHVAVGTSTGSVLIYDLRASK----PL 263 (703)
T ss_pred ecchhhhhheeeecccccCCCccccccCcceEEEecCCc--------------eeEEeeccCCcEEEEEcccCC----ce
Confidence 999875443332221 12333 38888887654 568899999999999998753 11
Q ss_pred eccccCCc--ceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCC
Q 036510 203 PALQMHTD--WVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNN 280 (288)
Q Consensus 203 ~~~~~h~~--~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~ 280 (288)
-...|.. +|..+.|.+... ...|+| .+-..++|||....+.... -+....++.+++-|++-+|.+|-.+.
T Consensus 264 -~~kdh~~e~pi~~l~~~~~~~--q~~v~S-~Dk~~~kiWd~~~Gk~~as----iEpt~~lND~C~~p~sGm~f~Ane~~ 335 (703)
T KOG2321|consen 264 -LVKDHGYELPIKKLDWQDTDQ--QNKVVS-MDKRILKIWDECTGKPMAS----IEPTSDLNDFCFVPGSGMFFTANESS 335 (703)
T ss_pred -eecccCCccceeeecccccCC--CceEEe-cchHHhhhcccccCCceee----ccccCCcCceeeecCCceEEEecCCC
Confidence 1234544 689999988631 233433 3345799999765322111 12234688999999999999987766
Q ss_pred cEEE
Q 036510 281 NVTL 284 (288)
Q Consensus 281 ~v~~ 284 (288)
.+.-
T Consensus 336 ~m~~ 339 (703)
T KOG2321|consen 336 KMHT 339 (703)
T ss_pred ccee
Confidence 5543
No 214
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=1e-10 Score=105.30 Aligned_cols=205 Identities=13% Similarity=0.146 Sum_probs=126.7
Q ss_pred CcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeC---CCcEEEeecCCCCceEEeEEeecCCCceeEEE
Q 036510 33 YSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSF---DGTVIIWKEGNSNEWIKDHVFEDHKSSVNSID 109 (288)
Q Consensus 33 ~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~---d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~ 109 (288)
..|.++|.++ .....+..|...+...+|+++ |+.|+..+. +..|.+||+.++.. ..+..+.+.+.+.+
T Consensus 182 ~~l~~~d~dg---~~~~~lt~~~~~v~~p~wSpD--G~~lay~s~~~g~~~i~~~dl~~g~~----~~l~~~~g~~~~~~ 252 (435)
T PRK05137 182 KRLAIMDQDG---ANVRYLTDGSSLVLTPRFSPN--RQEITYMSYANGRPRVYLLDLETGQR----ELVGNFPGMTFAPR 252 (435)
T ss_pred eEEEEECCCC---CCcEEEecCCCCeEeeEECCC--CCEEEEEEecCCCCEEEEEECCCCcE----EEeecCCCcccCcE
Confidence 3677777643 334566778889999999975 788887763 57899999976542 23444566778899
Q ss_pred eccCCCCeEEEEEeCCCc--EEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEee-cCC-
Q 036510 110 WAPHELGLCLACGSSDGN--ISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGG-CDN- 185 (288)
Q Consensus 110 ~~p~~~~~~l~sg~~d~~--i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~-~d~- 185 (288)
|+|++ ..++++.+.++. |++||+..+.. .....+........|+|++ +.++..+ .++
T Consensus 253 ~SPDG-~~la~~~~~~g~~~Iy~~d~~~~~~----~~Lt~~~~~~~~~~~spDG--------------~~i~f~s~~~g~ 313 (435)
T PRK05137 253 FSPDG-RKVVMSLSQGGNTDIYTMDLRSGTT----TRLTDSPAIDTSPSYSPDG--------------SQIVFESDRSGS 313 (435)
T ss_pred ECCCC-CEEEEEEecCCCceEEEEECCCCce----EEccCCCCccCceeEcCCC--------------CEEEEEECCCCC
Confidence 99984 334455666665 66667654321 2223344445678999987 4444333 333
Q ss_pred -cEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCC---CcEEEEEeecCCCcccceEeeccccCe
Q 036510 186 -TVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASED---GKVIIWTVAREGDQWEGKVLHDFKTPV 261 (288)
Q Consensus 186 -~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D---~~i~iw~~~~~~~~~~~~~~~~~~~~i 261 (288)
.|.++|+..+.. + .+..+...+....|+|++ ++|+..+.+ ..|.+|++.... ...+.. ...+
T Consensus 314 ~~Iy~~d~~g~~~--~---~lt~~~~~~~~~~~SpdG----~~ia~~~~~~~~~~i~~~d~~~~~----~~~lt~-~~~~ 379 (435)
T PRK05137 314 PQLYVMNADGSNP--R---RISFGGGRYSTPVWSPRG----DLIAFTKQGGGQFSIGVMKPDGSG----ERILTS-GFLV 379 (435)
T ss_pred CeEEEEECCCCCe--E---EeecCCCcccCeEECCCC----CEEEEEEcCCCceEEEEEECCCCc----eEeccC-CCCC
Confidence 577777655421 1 222233445678899985 567766543 357777764321 122221 2245
Q ss_pred EEEEeecCCCEEEEEeCC
Q 036510 262 YRVSWSLTGNILAVADGN 279 (288)
Q Consensus 262 ~~~~~spdg~~l~s~~~d 279 (288)
....|+|||+.|+..+.+
T Consensus 380 ~~p~~spDG~~i~~~~~~ 397 (435)
T PRK05137 380 EGPTWAPNGRVIMFFRQT 397 (435)
T ss_pred CCCeECCCCCEEEEEEcc
Confidence 678999999998876553
No 215
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.44 E-value=6.5e-13 Score=113.42 Aligned_cols=231 Identities=16% Similarity=0.210 Sum_probs=161.5
Q ss_pred ceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCce
Q 036510 13 TVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEW 92 (288)
Q Consensus 13 ~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~ 92 (288)
+-+.+.++.+|++|+-|+.-|.+..+|+... .+...+.- ...|.++.|.|. ..+.....-..+.|||- .+.+
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~--~L~~Ei~v-~Etv~Dv~~LHn---eq~~AVAQK~y~yvYD~-~GtE- 202 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTK--KLHFEINV-METVRDVTFLHN---EQFFAVAQKKYVYVYDN-NGTE- 202 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccc--eeeeeeeh-hhhhhhhhhhcc---hHHHHhhhhceEEEecC-CCcE-
Confidence 3467788999999999999999999998432 33333322 456888999874 44555666788999985 3443
Q ss_pred EEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceeccccc
Q 036510 93 IKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFL 172 (288)
Q Consensus 93 ~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~ 172 (288)
.+-++.| ..|..++|-|. -.+|++++..|.+..-|+..+....... .-...+..+.-+|..
T Consensus 203 --lHClk~~-~~v~rLeFLPy--HfLL~~~~~~G~L~Y~DVS~GklVa~~~---t~~G~~~vm~qNP~N----------- 263 (545)
T KOG1272|consen 203 --LHCLKRH-IRVARLEFLPY--HFLLVAASEAGFLKYQDVSTGKLVASIR---TGAGRTDVMKQNPYN----------- 263 (545)
T ss_pred --Eeehhhc-Cchhhhcccch--hheeeecccCCceEEEeechhhhhHHHH---ccCCccchhhcCCcc-----------
Confidence 2334444 57999999997 5788999999999988887664322111 112334555556654
Q ss_pred CCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccce
Q 036510 173 DPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGK 252 (288)
Q Consensus 173 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~ 252 (288)
..+.+|...|+|.+|..... +.+..+..|.++|++|++.|+ +.|.||.+.|..++|||++.-.+. .
T Consensus 264 ---aVih~GhsnGtVSlWSP~sk----ePLvKiLcH~g~V~siAv~~~----G~YMaTtG~Dr~~kIWDlR~~~ql---~ 329 (545)
T KOG1272|consen 264 ---AVIHLGHSNGTVSLWSPNSK----EPLVKILCHRGPVSSIAVDRG----GRYMATTGLDRKVKIWDLRNFYQL---H 329 (545)
T ss_pred ---ceEEEcCCCceEEecCCCCc----chHHHHHhcCCCcceEEECCC----CcEEeecccccceeEeeecccccc---c
Confidence 46789999999999986553 334456779999999999997 489999999999999999854221 1
Q ss_pred EeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510 253 VLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 253 ~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~ 287 (288)
.+.. .-+...++||..|-..++ --..|.||..
T Consensus 330 t~~t-p~~a~~ls~SqkglLA~~--~G~~v~iw~d 361 (545)
T KOG1272|consen 330 TYRT-PHPASNLSLSQKGLLALS--YGDHVQIWKD 361 (545)
T ss_pred eeec-CCCccccccccccceeee--cCCeeeeehh
Confidence 1111 235677888877765433 3367889974
No 216
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.42 E-value=7.2e-10 Score=92.55 Aligned_cols=198 Identities=14% Similarity=0.176 Sum_probs=129.8
Q ss_pred ccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEee---cCCCceeEEEeccCCCCeEEEE-E-eCCCcEE
Q 036510 55 KGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFE---DHKSSVNSIDWAPHELGLCLAC-G-SSDGNIS 129 (288)
Q Consensus 55 ~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~---~h~~~v~~l~~~p~~~~~~l~s-g-~~d~~i~ 129 (288)
..+|.+++..+ +.|+.+=.+. |.|+|+++=. ..+++. .+...+.++++++. +-++|- + ...|.|.
T Consensus 87 pt~IL~VrmNr----~RLvV~Lee~-IyIydI~~Mk---lLhTI~t~~~n~~gl~AlS~n~~--n~ylAyp~s~t~GdV~ 156 (391)
T KOG2110|consen 87 PTSILAVRMNR----KRLVVCLEES-IYIYDIKDMK---LLHTIETTPPNPKGLCALSPNNA--NCYLAYPGSTTSGDVV 156 (391)
T ss_pred CCceEEEEEcc----ceEEEEEccc-EEEEecccce---eehhhhccCCCccceEeeccCCC--CceEEecCCCCCceEE
Confidence 44677777753 3555555544 9999987533 344442 34444555555443 334442 2 3457899
Q ss_pred EEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCc-EEEEEEeCCceeeeeeeccc-c
Q 036510 130 VFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNT-VKVWKLYNGIWKMDCFPALQ-M 207 (288)
Q Consensus 130 i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~-i~iwd~~~~~~~~~~~~~~~-~ 207 (288)
+||..+ +.+.....+|...+-+++|+|++ .+|+|+|+.|+ ||++.+.+|+.. .+++ |
T Consensus 157 l~d~~n---l~~v~~I~aH~~~lAalafs~~G--------------~llATASeKGTVIRVf~v~~G~kl----~eFRRG 215 (391)
T KOG2110|consen 157 LFDTIN---LQPVNTINAHKGPLAALAFSPDG--------------TLLATASEKGTVIRVFSVPEGQKL----YEFRRG 215 (391)
T ss_pred EEEccc---ceeeeEEEecCCceeEEEECCCC--------------CEEEEeccCceEEEEEEcCCccEe----eeeeCC
Confidence 999865 33445566999999999999998 78999999998 779999888532 2332 2
Q ss_pred C-CcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccc-----eE----------------e-----------
Q 036510 208 H-TDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEG-----KV----------------L----------- 254 (288)
Q Consensus 208 h-~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~-----~~----------------~----------- 254 (288)
- .-.|.+++|+|++ ++|++.|.-++|++|++......... .. +
T Consensus 216 ~~~~~IySL~Fs~ds----~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FA 291 (391)
T KOG2110|consen 216 TYPVSIYSLSFSPDS----QFLAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFA 291 (391)
T ss_pred ceeeEEEEEEECCCC----CeEEEecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhcccee
Confidence 2 3358999999985 68999999999999999753210000 00 0
Q ss_pred --eccccCe-EEEEee--cCCCEEEEEeCCCcEEEeEc
Q 036510 255 --HDFKTPV-YRVSWS--LTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 255 --~~~~~~i-~~~~~s--pdg~~l~s~~~d~~v~~w~~ 287 (288)
+-..+.. ..+.+. +..+++.+++.||.+..|.+
T Consensus 292 t~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l 329 (391)
T KOG2110|consen 292 TAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRL 329 (391)
T ss_pred EEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEc
Confidence 0001111 345555 47889999999999998874
No 217
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=1.7e-10 Score=103.54 Aligned_cols=210 Identities=19% Similarity=0.232 Sum_probs=125.4
Q ss_pred CcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCC---CcEEEeecCCCCceEEeEEeecCCCceeEEE
Q 036510 33 YSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFD---GTVIIWKEGNSNEWIKDHVFEDHKSSVNSID 109 (288)
Q Consensus 33 ~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d---~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~ 109 (288)
..+.++|.++ .....+..+...+.+.+|+|+ |+.|+..+.+ ..|.+||+.++.. ..+....+.+.+.+
T Consensus 176 ~~L~~~D~dG---~~~~~l~~~~~~v~~p~wSPD--G~~la~~s~~~~~~~I~~~dl~~g~~----~~l~~~~g~~~~~~ 246 (427)
T PRK02889 176 YQLQISDADG---QNAQSALSSPEPIISPAWSPD--GTKLAYVSFESKKPVVYVHDLATGRR----RVVANFKGSNSAPA 246 (427)
T ss_pred cEEEEECCCC---CCceEeccCCCCcccceEcCC--CCEEEEEEccCCCcEEEEEECCCCCE----EEeecCCCCccceE
Confidence 3455555543 334455677888999999875 7888877643 4599999876542 12333344567899
Q ss_pred eccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeE-EeecCCcEE
Q 036510 110 WAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLC-SGGCDNTVK 188 (288)
Q Consensus 110 ~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~-s~~~d~~i~ 188 (288)
|+|++ ..++++.+.++...||.+...... ......+........|+|++ +.|+ ++..++...
T Consensus 247 ~SPDG-~~la~~~~~~g~~~Iy~~d~~~~~--~~~lt~~~~~~~~~~wSpDG--------------~~l~f~s~~~g~~~ 309 (427)
T PRK02889 247 WSPDG-RTLAVALSRDGNSQIYTVNADGSG--LRRLTQSSGIDTEPFFSPDG--------------RSIYFTSDRGGAPQ 309 (427)
T ss_pred ECCCC-CEEEEEEccCCCceEEEEECCCCC--cEECCCCCCCCcCeEEcCCC--------------CEEEEEecCCCCcE
Confidence 99984 344446677887777765432211 12222334445678899997 4444 443456677
Q ss_pred EEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCC---cEEEEEeecCCCcccceEeeccccCeEEEE
Q 036510 189 VWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDG---KVIIWTVAREGDQWEGKVLHDFKTPVYRVS 265 (288)
Q Consensus 189 iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~---~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~ 265 (288)
||.+.......+.+ ...+ .......|+|++ ++|+..+.++ .|.+||+.... ...+.. ........
T Consensus 310 Iy~~~~~~g~~~~l-t~~g--~~~~~~~~SpDG----~~Ia~~s~~~g~~~I~v~d~~~g~----~~~lt~-~~~~~~p~ 377 (427)
T PRK02889 310 IYRMPASGGAAQRV-TFTG--SYNTSPRISPDG----KLLAYISRVGGAFKLYVQDLATGQ----VTALTD-TTRDESPS 377 (427)
T ss_pred EEEEECCCCceEEE-ecCC--CCcCceEECCCC----CEEEEEEccCCcEEEEEEECCCCC----eEEccC-CCCccCce
Confidence 77764221111111 1222 233467899984 6787776554 69999986432 122222 12345789
Q ss_pred eecCCCEEEEEeCCC
Q 036510 266 WSLTGNILAVADGNN 280 (288)
Q Consensus 266 ~spdg~~l~s~~~d~ 280 (288)
|+|||+.|+.++.++
T Consensus 378 ~spdg~~l~~~~~~~ 392 (427)
T PRK02889 378 FAPNGRYILYATQQG 392 (427)
T ss_pred ECCCCCEEEEEEecC
Confidence 999999988887544
No 218
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=3.1e-10 Score=101.94 Aligned_cols=212 Identities=16% Similarity=0.161 Sum_probs=126.3
Q ss_pred CcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEee---CCCcEEEeecCCCCceEEeEEeecCCCceeEEE
Q 036510 33 YSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCS---FDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSID 109 (288)
Q Consensus 33 ~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s---~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~ 109 (288)
..+.++|.++.. ...+..+...+...+|+|+ |+.|+..+ .+..+.+|++..+.. ..+....+.+..+.
T Consensus 179 ~~l~~~d~dg~~---~~~lt~~~~~~~~p~wSPD--G~~la~~s~~~g~~~i~i~dl~~G~~----~~l~~~~~~~~~~~ 249 (429)
T PRK03629 179 YELRVSDYDGYN---QFVVHRSPQPLMSPAWSPD--GSKLAYVTFESGRSALVIQTLANGAV----RQVASFPRHNGAPA 249 (429)
T ss_pred eeEEEEcCCCCC---CEEeecCCCceeeeEEcCC--CCEEEEEEecCCCcEEEEEECCCCCe----EEccCCCCCcCCeE
Confidence 368888876432 2334556778899999975 78887654 345788999865431 12222333456789
Q ss_pred eccCCCCeEEEEEeCCC--cEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEee-cCCc
Q 036510 110 WAPHELGLCLACGSSDG--NISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGG-CDNT 186 (288)
Q Consensus 110 ~~p~~~~~~l~sg~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~-~d~~ 186 (288)
|+|++ ..++.+.+.++ .|++||+..+.. .....+...+....|+|++ +.|+..+ .++.
T Consensus 250 ~SPDG-~~La~~~~~~g~~~I~~~d~~tg~~----~~lt~~~~~~~~~~wSPDG--------------~~I~f~s~~~g~ 310 (429)
T PRK03629 250 FSPDG-SKLAFALSKTGSLNLYVMDLASGQI----RQVTDGRSNNTEPTWFPDS--------------QNLAYTSDQAGR 310 (429)
T ss_pred ECCCC-CEEEEEEcCCCCcEEEEEECCCCCE----EEccCCCCCcCceEECCCC--------------CEEEEEeCCCCC
Confidence 99984 23333444455 588888865422 1222233456788999997 4454444 3445
Q ss_pred EEEEEE--eCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCC---CcEEEEEeecCCCcccceEeeccccCe
Q 036510 187 VKVWKL--YNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASED---GKVIIWTVAREGDQWEGKVLHDFKTPV 261 (288)
Q Consensus 187 i~iwd~--~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D---~~i~iw~~~~~~~~~~~~~~~~~~~~i 261 (288)
..||.+ .++. .+ .+..+...+....|+|++ ++|+..+.+ ..|.+||+.... ...+... ...
T Consensus 311 ~~Iy~~d~~~g~--~~---~lt~~~~~~~~~~~SpDG----~~Ia~~~~~~g~~~I~~~dl~~g~----~~~Lt~~-~~~ 376 (429)
T PRK03629 311 PQVYKVNINGGA--PQ---RITWEGSQNQDADVSSDG----KFMVMVSSNGGQQHIAKQDLATGG----VQVLTDT-FLD 376 (429)
T ss_pred ceEEEEECCCCC--eE---EeecCCCCccCEEECCCC----CEEEEEEccCCCceEEEEECCCCC----eEEeCCC-CCC
Confidence 566644 3432 11 222233345678999985 567666543 357788875432 1222221 123
Q ss_pred EEEEeecCCCEEEEEeCCCc---EEEeE
Q 036510 262 YRVSWSLTGNILAVADGNNN---VTLWE 286 (288)
Q Consensus 262 ~~~~~spdg~~l~s~~~d~~---v~~w~ 286 (288)
....|+|||++|+.++.++. +.+++
T Consensus 377 ~~p~~SpDG~~i~~~s~~~~~~~l~~~~ 404 (429)
T PRK03629 377 ETPSIAPNGTMVIYSSSQGMGSVLNLVS 404 (429)
T ss_pred CCceECCCCCEEEEEEcCCCceEEEEEE
Confidence 46789999999999998765 45554
No 219
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.41 E-value=4.4e-11 Score=95.54 Aligned_cols=112 Identities=18% Similarity=0.478 Sum_probs=79.9
Q ss_pred CCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEe
Q 036510 102 KSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSG 181 (288)
Q Consensus 102 ~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~ 181 (288)
.++|..++|+|++....++.|..++.+.+||++.. ... .-+...+..|.|+|++ ++|+.+
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~----~i~--~~~~~~~n~i~wsP~G--------------~~l~~~ 118 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGK----KIF--SFGTQPRNTISWSPDG--------------RFLVLA 118 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCccc----EeE--eecCCCceEEEECCCC--------------CEEEEE
Confidence 45799999999864444555667789999998621 111 1234567889999998 778877
Q ss_pred ecC---CcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeC------CCcEEEEEee
Q 036510 182 GCD---NTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASE------DGKVIIWTVA 243 (288)
Q Consensus 182 ~~d---~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~------D~~i~iw~~~ 243 (288)
+.+ |.|.+||+++. +.+.... |. .+..++|+|++ ++|+++.. |+.++||+.+
T Consensus 119 g~~n~~G~l~~wd~~~~----~~i~~~~-~~-~~t~~~WsPdG----r~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 119 GFGNLNGDLEFWDVRKK----KKISTFE-HS-DATDVEWSPDG----RYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred EccCCCcEEEEEECCCC----EEeeccc-cC-cEEEEEEcCCC----CEEEEEEeccceeccccEEEEEec
Confidence 654 45999999864 3343332 33 37899999985 67887764 8899999875
No 220
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=1.5e-10 Score=103.91 Aligned_cols=220 Identities=17% Similarity=0.154 Sum_probs=129.2
Q ss_pred cccccceEEEEEcCCCCEEEEeeC---CCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEe-eCCC--cE
Q 036510 8 TGHEDTVHDVAMDYYGKRLATASS---DYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASC-SFDG--TV 81 (288)
Q Consensus 8 ~~h~~~v~~~~~s~~g~~l~s~~~---d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~-s~d~--~v 81 (288)
+.+...+...+|+|||+.|+-.+. +..+.+|++..+..+.+..+.+| +..++|+|+ |+.|+.. +.++ .|
T Consensus 195 t~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~---~~~~~~SPD--G~~La~~~~~~g~~~I 269 (429)
T PRK03629 195 HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRH---NGAPAFSPD--GSKLAFALSKTGSLNL 269 (429)
T ss_pred ecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCC---cCCeEECCC--CCEEEEEEcCCCCcEE
Confidence 345667888999999999886543 45688888865443444444444 446789875 7777644 4455 47
Q ss_pred EEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEe-CCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCC
Q 036510 82 IIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGS-SDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPS 160 (288)
Q Consensus 82 ~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~ 160 (288)
.+||+.++.. ..+..+...+....|+|+ +..++..+ .++...||.+...... . .....+........|+|+
T Consensus 270 ~~~d~~tg~~----~~lt~~~~~~~~~~wSPD--G~~I~f~s~~~g~~~Iy~~d~~~g~-~-~~lt~~~~~~~~~~~SpD 341 (429)
T PRK03629 270 YVMDLASGQI----RQVTDGRSNNTEPTWFPD--SQNLAYTSDQAGRPQVYKVNINGGA-P-QRITWEGSQNQDADVSSD 341 (429)
T ss_pred EEEECCCCCE----EEccCCCCCcCceEECCC--CCEEEEEeCCCCCceEEEEECCCCC-e-EEeecCCCCccCEEECCC
Confidence 7888865431 223334456788999998 44454444 3455566644322111 1 111122233456889998
Q ss_pred CCCCceecccccCCCceeEEeec-C--CcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCc-
Q 036510 161 TAPGALVGSGFLDPVQKLCSGGC-D--NTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGK- 236 (288)
Q Consensus 161 ~~~~~~~~~~~~~~~~~l~s~~~-d--~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~- 236 (288)
+ +.++..+. + ..|.+||+.++.. +.+. ..+ ...+..|+||+ ++|+.++.|+.
T Consensus 342 G--------------~~Ia~~~~~~g~~~I~~~dl~~g~~--~~Lt--~~~--~~~~p~~SpDG----~~i~~~s~~~~~ 397 (429)
T PRK03629 342 G--------------KFMVMVSSNGGQQHIAKQDLATGGV--QVLT--DTF--LDETPSIAPNG----TMVIYSSSQGMG 397 (429)
T ss_pred C--------------CEEEEEEccCCCceEEEEECCCCCe--EEeC--CCC--CCCCceECCCC----CEEEEEEcCCCc
Confidence 7 44544332 2 3477888876631 2221 111 23467899984 67888888775
Q ss_pred --EEEEEeecCCCcccceEeeccccCeEEEEeec
Q 036510 237 --VIIWTVAREGDQWEGKVLHDFKTPVYRVSWSL 268 (288)
Q Consensus 237 --i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~sp 268 (288)
+.++++... ....+..+.+.+...+|+|
T Consensus 398 ~~l~~~~~~G~----~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 398 SVLNLVSTDGR----FKARLPATDGQVKFPAWSP 427 (429)
T ss_pred eEEEEEECCCC----CeEECccCCCCcCCcccCC
Confidence 455554321 1233445556778888887
No 221
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.41 E-value=1.9e-08 Score=87.85 Aligned_cols=254 Identities=12% Similarity=0.121 Sum_probs=150.9
Q ss_pred EEEEEcCCCCEEEEeeC----CCcEEEEEeCCC--CceeeEEEeccccCeEEEEecCCCCCCEEEEee-CCCcEEEeecC
Q 036510 15 HDVAMDYYGKRLATASS----DYSIKIIGVGNN--TSQHLAKLSGHKGAVWEVAWAHPKFGSILASCS-FDGTVIIWKEG 87 (288)
Q Consensus 15 ~~~~~s~~g~~l~s~~~----d~~i~lwd~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~d~~v~iwd~~ 87 (288)
.-++++|++++|.+... ++.|..|.++.. ..+.+.+.......-..++.+++ +++|+.+. .+|+|.++++.
T Consensus 40 s~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~--g~~l~vany~~g~v~v~~l~ 117 (345)
T PF10282_consen 40 SWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPD--GRFLYVANYGGGSVSVFPLD 117 (345)
T ss_dssp CCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTT--SSEEEEEETTTTEEEEEEEC
T ss_pred ceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecC--CCEEEEEEccCCeEEEEEcc
Confidence 34678999999988877 468888988653 22334443322334467888754 67776665 59999999997
Q ss_pred CCCceEEe-EEee----------cCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCC-CeeeEEee-ccCCCCeeE
Q 036510 88 NSNEWIKD-HVFE----------DHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADG-GWDTSRID-QAHPVGVTS 154 (288)
Q Consensus 88 ~~~~~~~~-~~~~----------~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~-~~~~~~~~-~~~~~~v~~ 154 (288)
........ ..+. .......++.++|++ ..++++.-....|.+|++.... .+...... ......-+.
T Consensus 118 ~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg-~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh 196 (345)
T PF10282_consen 118 DDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDG-RFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRH 196 (345)
T ss_dssp TTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTS-SEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEE
T ss_pred CCcccceeeeecccCCCCCcccccccccceeEEECCCC-CEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcE
Confidence 64332221 1111 012346789999984 3344444334589999997653 23322211 223456788
Q ss_pred EEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeee---ccc-cC--CcceEEEEecCCCCCCCcEE
Q 036510 155 VSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFP---ALQ-MH--TDWVRDVAWAPNLGLPKSTI 228 (288)
Q Consensus 155 i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~-~h--~~~V~~v~~sp~~~~~~~~l 228 (288)
+.|+|++. ...+....+++|.++++......++.+. .+. +. ......+.++|++ ..+.
T Consensus 197 ~~f~pdg~-------------~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg---~~ly 260 (345)
T PF10282_consen 197 LAFSPDGK-------------YAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDG---RFLY 260 (345)
T ss_dssp EEE-TTSS-------------EEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTS---SEEE
T ss_pred EEEcCCcC-------------EEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCC---CEEE
Confidence 99999873 3456677788899999983211222222 221 11 1256889999985 2345
Q ss_pred EEEeCCCcEEEEEeecCC-CcccceEeeccccCeEEEEeecCCCEEEEEe-CCCcEEEeEc
Q 036510 229 ASASEDGKVIIWTVAREG-DQWEGKVLHDFKTPVYRVSWSLTGNILAVAD-GNNNVTLWEE 287 (288)
Q Consensus 229 ~s~s~D~~i~iw~~~~~~-~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~-~d~~v~~w~~ 287 (288)
|+--..++|.+|++.... .......+.........++++|+|++|+++. .+++|.+|++
T Consensus 261 vsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~ 321 (345)
T PF10282_consen 261 VSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDI 321 (345)
T ss_dssp EEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred EEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEE
Confidence 555568899999995432 1211122222234578999999999999887 4578999874
No 222
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=1.6e-10 Score=104.06 Aligned_cols=212 Identities=13% Similarity=0.174 Sum_probs=127.0
Q ss_pred CcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeC---CCcEEEeecCCCCceEEeEEeecCCCceeEEE
Q 036510 33 YSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSF---DGTVIIWKEGNSNEWIKDHVFEDHKSSVNSID 109 (288)
Q Consensus 33 ~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~---d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~ 109 (288)
.+|.+||.++. ....+..|...+...+|+++ |+.|+..+. +..+.+|++..+.. ..+..+.+...+.+
T Consensus 184 ~~l~i~D~~g~---~~~~lt~~~~~v~~p~wSpD--g~~la~~s~~~~~~~l~~~dl~~g~~----~~l~~~~g~~~~~~ 254 (433)
T PRK04922 184 YALQVADSDGY---NPQTILRSAEPILSPAWSPD--GKKLAYVSFERGRSAIYVQDLATGQR----ELVASFRGINGAPS 254 (433)
T ss_pred EEEEEECCCCC---CceEeecCCCccccccCCCC--CCEEEEEecCCCCcEEEEEECCCCCE----EEeccCCCCccCce
Confidence 45888887543 34456667778999999875 888887774 34699999876542 22333344556789
Q ss_pred eccCCCCeEEEEEeCCC--cEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEee-cCCc
Q 036510 110 WAPHELGLCLACGSSDG--NISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGG-CDNT 186 (288)
Q Consensus 110 ~~p~~~~~~l~sg~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~-~d~~ 186 (288)
|+|++ ..++++.+.++ .|++||+..+.. .....+........|+|++ +.|+..+ .++.
T Consensus 255 ~SpDG-~~l~~~~s~~g~~~Iy~~d~~~g~~----~~lt~~~~~~~~~~~spDG--------------~~l~f~sd~~g~ 315 (433)
T PRK04922 255 FSPDG-RRLALTLSRDGNPEIYVMDLGSRQL----TRLTNHFGIDTEPTWAPDG--------------KSIYFTSDRGGR 315 (433)
T ss_pred ECCCC-CEEEEEEeCCCCceEEEEECCCCCe----EECccCCCCccceEECCCC--------------CEEEEEECCCCC
Confidence 99985 33444555555 588888865432 1222333344678999987 4454433 4444
Q ss_pred --EEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCC---cEEEEEeecCCCcccceEeeccccCe
Q 036510 187 --VKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDG---KVIIWTVAREGDQWEGKVLHDFKTPV 261 (288)
Q Consensus 187 --i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~---~i~iw~~~~~~~~~~~~~~~~~~~~i 261 (288)
|.++|+.++.. +.+ ..+........|+|++ ++|+..+.++ .|.+||+.... ...+.. ....
T Consensus 316 ~~iy~~dl~~g~~--~~l---t~~g~~~~~~~~SpDG----~~Ia~~~~~~~~~~I~v~d~~~g~----~~~Lt~-~~~~ 381 (433)
T PRK04922 316 PQIYRVAASGGSA--ERL---TFQGNYNARASVSPDG----KKIAMVHGSGGQYRIAVMDLSTGS----VRTLTP-GSLD 381 (433)
T ss_pred ceEEEEECCCCCe--EEe---ecCCCCccCEEECCCC----CEEEEEECCCCceeEEEEECCCCC----eEECCC-CCCC
Confidence 44455544421 111 1122334578999985 5677665432 58899875432 122222 1234
Q ss_pred EEEEeecCCCEEEEEeCC---CcEEEeE
Q 036510 262 YRVSWSLTGNILAVADGN---NNVTLWE 286 (288)
Q Consensus 262 ~~~~~spdg~~l~s~~~d---~~v~~w~ 286 (288)
....|+|||++|+..+.+ +.+.+++
T Consensus 382 ~~p~~spdG~~i~~~s~~~g~~~L~~~~ 409 (433)
T PRK04922 382 ESPSFAPNGSMVLYATREGGRGVLAAVS 409 (433)
T ss_pred CCceECCCCCEEEEEEecCCceEEEEEE
Confidence 567999999998887653 2455554
No 223
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.39 E-value=4.2e-11 Score=99.65 Aligned_cols=190 Identities=20% Similarity=0.306 Sum_probs=126.7
Q ss_pred cCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecC
Q 036510 56 GAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARA 135 (288)
Q Consensus 56 ~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~ 135 (288)
-.+..++|.+. =..|+.+..|-.|++++-.. ++.... ...-...|+|++|-|-. +..++.|+..| |-+|....
T Consensus 99 ~dlr~~aWhqH--~~~fava~nddvVriy~kss-t~pt~L--ks~sQrnvtclawRPls-aselavgCr~g-IciW~~s~ 171 (445)
T KOG2139|consen 99 IDLRGVAWHQH--IIAFAVATNDDVVRIYDKSS-TCPTKL--KSVSQRNVTCLAWRPLS-ASELAVGCRAG-ICIWSDSR 171 (445)
T ss_pred cceeeEeechh--hhhhhhhccCcEEEEeccCC-CCCcee--cchhhcceeEEEeccCC-cceeeeeecce-eEEEEcCc
Confidence 34677888642 35678999999999998654 322111 12234579999999975 45678888766 66997754
Q ss_pred CCCeeeE-----------EeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeec-CCcEEEEEEeCCceeeeeee
Q 036510 136 DGGWDTS-----------RIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGC-DNTVKVWKLYNGIWKMDCFP 203 (288)
Q Consensus 136 ~~~~~~~-----------~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~ 203 (288)
....... ....+| ..|+++.|++++ ..+++++. |..|.|||..+++. +.
T Consensus 172 tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dg--------------t~l~tAS~gsssi~iWdpdtg~~----~p 232 (445)
T KOG2139|consen 172 TLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDG--------------TILVTASFGSSSIMIWDPDTGQK----IP 232 (445)
T ss_pred ccccccccccccccchhheeCCCC-ceeeEEEEcCCC--------------CEEeecccCcceEEEEcCCCCCc----cc
Confidence 3222111 112344 579999999997 56777766 45699999988742 11
Q ss_pred ccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeC
Q 036510 204 ALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADG 278 (288)
Q Consensus 204 ~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~ 278 (288)
-..-..+.+.-+.||||+ .+|.++.-|+..++|+... .+..+.-.-..+.|....|+|+|++|+-+..
T Consensus 233 L~~~glgg~slLkwSPdg----d~lfaAt~davfrlw~e~q---~wt~erw~lgsgrvqtacWspcGsfLLf~~s 300 (445)
T KOG2139|consen 233 LIPKGLGGFSLLKWSPDG----DVLFAATCDAVFRLWQENQ---SWTKERWILGSGRVQTACWSPCGSFLLFACS 300 (445)
T ss_pred ccccCCCceeeEEEcCCC----CEEEEecccceeeeehhcc---cceecceeccCCceeeeeecCCCCEEEEEEc
Confidence 111223447889999985 6899999999999996543 2222222222347899999999998776654
No 224
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.38 E-value=1.7e-10 Score=96.94 Aligned_cols=225 Identities=15% Similarity=0.131 Sum_probs=146.3
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCC--ceeeEEEeccccCeEEEEecCCCCCCEEEEeeCC--CcEEEeec
Q 036510 11 EDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNT--SQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFD--GTVIIWKE 86 (288)
Q Consensus 11 ~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d--~~v~iwd~ 86 (288)
++.|.+++.. +| .|++|-.+|.+++|....+. ...+.-+..+ ..+..+.-. +....++++|+.- ..++|||+
T Consensus 105 ~~~I~gl~~~-dg-~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~-~~~p~Iva~GGke~~n~lkiwdl 180 (412)
T KOG3881|consen 105 TKSIKGLKLA-DG-TLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQT-DTDPYIVATGGKENINELKIWDL 180 (412)
T ss_pred cccccchhhc-CC-EEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccC-CCCCceEecCchhcccceeeeec
Confidence 3444444333 35 57778889999999875322 1223333333 446666654 4457788899998 99999998
Q ss_pred CCCCceEEeEEeec---------CCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEe
Q 036510 87 GNSNEWIKDHVFED---------HKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSW 157 (288)
Q Consensus 87 ~~~~~~~~~~~~~~---------h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~ 157 (288)
.+.. ++..-+. -.-.++.+.|-|......+|+++.-+.+++||++.++. ++........++.++..
T Consensus 181 e~~~---qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRR--PV~~fd~~E~~is~~~l 255 (412)
T KOG3881|consen 181 EQSK---QIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRR--PVAQFDFLENPISSTGL 255 (412)
T ss_pred ccce---eeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCc--ceeEeccccCcceeeee
Confidence 7643 1211111 11135567787654456799999999999999986542 12111122334666666
Q ss_pred CCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcE
Q 036510 158 APSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKV 237 (288)
Q Consensus 158 ~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i 237 (288)
.|.+ +++++|..-+.+..+|++.+. -....+.+-.+.|+++..+|.. .++|+++-|+.+
T Consensus 256 ~p~g--------------n~Iy~gn~~g~l~~FD~r~~k---l~g~~~kg~tGsirsih~hp~~----~~las~GLDRyv 314 (412)
T KOG3881|consen 256 TPSG--------------NFIYTGNTKGQLAKFDLRGGK---LLGCGLKGITGSIRSIHCHPTH----PVLASCGLDRYV 314 (412)
T ss_pred cCCC--------------cEEEEecccchhheecccCce---eeccccCCccCCcceEEEcCCC----ceEEeeccceeE
Confidence 5654 889999999999999999863 1233478888899999999974 589999999999
Q ss_pred EEEEeecCCCcccceEeecc-ccCeEEEEeecCC
Q 036510 238 IIWTVAREGDQWEGKVLHDF-KTPVYRVSWSLTG 270 (288)
Q Consensus 238 ~iw~~~~~~~~~~~~~~~~~-~~~i~~~~~spdg 270 (288)
||+|++..+. +.+.+ +..++++-+.++-
T Consensus 315 RIhD~ktrkl-----l~kvYvKs~lt~il~~~~~ 343 (412)
T KOG3881|consen 315 RIHDIKTRKL-----LHKVYVKSRLTFILLRDDV 343 (412)
T ss_pred EEeecccchh-----hhhhhhhccccEEEecCCc
Confidence 9999986321 11111 3456666665543
No 225
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.37 E-value=6.8e-11 Score=99.23 Aligned_cols=247 Identities=11% Similarity=0.130 Sum_probs=163.0
Q ss_pred ccceEEEEEcCCC--CEEEEeeCCCcEEEEEeCCCCcee----eEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEe
Q 036510 11 EDTVHDVAMDYYG--KRLATASSDYSIKIIGVGNNTSQH----LAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIW 84 (288)
Q Consensus 11 ~~~v~~~~~s~~g--~~l~s~~~d~~i~lwd~~~~~~~~----~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iw 84 (288)
...|..+.|..++ ..|...+.|..+..+......... +.+...-..+|..+... ...|++|-.+|.+.+|
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~----dg~Litc~~sG~l~~~ 130 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA----DGTLITCVSSGNLQVR 130 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc----CCEEEEEecCCcEEEE
Confidence 3567777776554 445555577777776654321111 12334456777777764 3578888999999999
Q ss_pred ecCCCCc--eEEeEEeecCCCceeEEEeccCCCCeEEEEEeCC--CcEEEEeecCCCCeeeEEee--------ccCCCCe
Q 036510 85 KEGNSNE--WIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSD--GNISVFTARADGGWDTSRID--------QAHPVGV 152 (288)
Q Consensus 85 d~~~~~~--~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d--~~i~i~d~~~~~~~~~~~~~--------~~~~~~v 152 (288)
....+.. -++. .+..+ ..+..+.-+|.. ...+|+|+.. +.+.|||+.... +.+.-- .--+.-+
T Consensus 131 ~~k~~d~hss~l~-~la~g-~g~~~~r~~~~~-p~Iva~GGke~~n~lkiwdle~~~--qiw~aKNvpnD~L~LrVPvW~ 205 (412)
T KOG3881|consen 131 HDKSGDLHSSKLI-KLATG-PGLYDVRQTDTD-PYIVATGGKENINELKIWDLEQSK--QIWSAKNVPNDRLGLRVPVWI 205 (412)
T ss_pred eccCCccccccce-eeecC-CceeeeccCCCC-CceEecCchhcccceeeeecccce--eeeeccCCCCccccceeeeee
Confidence 8874331 1111 12222 345556555542 4578889988 899999997542 111100 0012234
Q ss_pred eEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEe
Q 036510 153 TSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASAS 232 (288)
Q Consensus 153 ~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s 232 (288)
+.+.|-|... .+.|++++.-+.+++||.+.+-++ +..+.--..+|.++..-|. +++|.+|.
T Consensus 206 tdi~Fl~g~~------------~~~fat~T~~hqvR~YDt~~qRRP---V~~fd~~E~~is~~~l~p~----gn~Iy~gn 266 (412)
T KOG3881|consen 206 TDIRFLEGSP------------NYKFATITRYHQVRLYDTRHQRRP---VAQFDFLENPISSTGLTPS----GNFIYTGN 266 (412)
T ss_pred ccceecCCCC------------CceEEEEecceeEEEecCcccCcc---eeEeccccCcceeeeecCC----CcEEEEec
Confidence 4555544421 367999999999999999875433 3333334556899998886 47899999
Q ss_pred CCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510 233 EDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 233 ~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~ 287 (288)
.-+.+..||++.... -+..+++..+.|.++..+|.++++|+++.|+.|||+|.
T Consensus 267 ~~g~l~~FD~r~~kl--~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ 319 (412)
T KOG3881|consen 267 TKGQLAKFDLRGGKL--LGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDI 319 (412)
T ss_pred ccchhheecccCcee--eccccCCccCCcceEEEcCCCceEEeeccceeEEEeec
Confidence 999999999986432 12334566788999999999999999999999999995
No 226
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.36 E-value=2.1e-10 Score=108.40 Aligned_cols=223 Identities=18% Similarity=0.216 Sum_probs=141.3
Q ss_pred CCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCC----CCceEEeEEeecCCCceeEEEeccCCCCeE
Q 036510 43 NTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGN----SNEWIKDHVFEDHKSSVNSIDWAPHELGLC 118 (288)
Q Consensus 43 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~----~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~ 118 (288)
.++..+..+..|...+..++-+++ ++.+|+|||.||+||+|+.+. +.......++......+.++...+. +..
T Consensus 1036 p~G~lVAhL~Ehs~~v~k~a~s~~-~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~--~~~ 1112 (1431)
T KOG1240|consen 1036 PRGILVAHLHEHSSAVIKLAVSSE-HTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGN--GDQ 1112 (1431)
T ss_pred ccceEeehhhhccccccceeecCC-CCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccC--CCe
Confidence 346778889999999999998865 468999999999999999753 1222233344445677888887776 667
Q ss_pred EEEEeCCCcEEEEeecCCC--CeeeE--EeeccC-CCCeeEE-EeCCCCCCCceecccccCCCceeEEeecCCcEEEEEE
Q 036510 119 LACGSSDGNISVFTARADG--GWDTS--RIDQAH-PVGVTSV-SWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKL 192 (288)
Q Consensus 119 l~sg~~d~~i~i~d~~~~~--~~~~~--~~~~~~-~~~v~~i-~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~ 192 (288)
+|.++.||.|++.++.... ..... +....+ .+.+.++ .+.... ....++.+..-+.|..||+
T Consensus 1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~------------~S~~lvy~T~~~~iv~~D~ 1180 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIV------------QSHVLVYATDLSRIVSWDT 1180 (1431)
T ss_pred EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccc------------cceeEEEEEeccceEEecc
Confidence 8999999999998876421 11100 011111 1112222 111100 0125777777788999999
Q ss_pred eCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCC--
Q 036510 193 YNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTG-- 270 (288)
Q Consensus 193 ~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg-- 270 (288)
+.....-.. ...-..+.|++++.+|. .+.++.|..-|.+.+||++-+.. ...--+++..+|..+..+|--
T Consensus 1181 r~~~~~w~l--k~~~~hG~vTSi~idp~----~~WlviGts~G~l~lWDLRF~~~--i~sw~~P~~~~i~~v~~~~~~~~ 1252 (1431)
T KOG1240|consen 1181 RMRHDAWRL--KNQLRHGLVTSIVIDPW----CNWLVIGTSRGQLVLWDLRFRVP--ILSWEHPARAPIRHVWLCPTYPQ 1252 (1431)
T ss_pred hhhhhHHhh--hcCccccceeEEEecCC----ceEEEEecCCceEEEEEeecCce--eecccCcccCCcceEEeeccCCC
Confidence 764110000 11223456999999996 47899999999999999984311 111113445678777777643
Q ss_pred -CEEEEE-e-CCCcEEEeEcC
Q 036510 271 -NILAVA-D-GNNNVTLWEEA 288 (288)
Q Consensus 271 -~~l~s~-~-~d~~v~~w~~~ 288 (288)
...+++ + ..+.|.+|+++
T Consensus 1253 ~S~~vs~~~~~~nevs~wn~~ 1273 (1431)
T KOG1240|consen 1253 ESVSVSAGSSSNNEVSTWNME 1273 (1431)
T ss_pred CceEEEecccCCCceeeeecc
Confidence 344444 3 57889999863
No 227
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.36 E-value=4.1e-12 Score=110.37 Aligned_cols=95 Identities=24% Similarity=0.361 Sum_probs=79.4
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCC
Q 036510 11 EDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSN 90 (288)
Q Consensus 11 ~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~ 90 (288)
++.|...+|+|||++||+.|.|+.+||+|.+.. +++..+...-+.+.+++||+| |+++++|++|--|.||.+....
T Consensus 290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~--eLlg~mkSYFGGLLCvcWSPD--GKyIvtGGEDDLVtVwSf~erR 365 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQ--ELLGVMKSYFGGLLCVCWSPD--GKYIVTGGEDDLVTVWSFEERR 365 (636)
T ss_pred cccccceeEcCCCceEEEEecCceEEEeeccHH--HHHHHHHhhccceEEEEEcCC--ccEEEecCCcceEEEEEeccce
Confidence 457888999999999999999999999998643 556666667788999999975 9999999999999999986543
Q ss_pred ceEEeEEeecCCCceeEEEecc
Q 036510 91 EWIKDHVFEDHKSSVNSIDWAP 112 (288)
Q Consensus 91 ~~~~~~~~~~h~~~v~~l~~~p 112 (288)
.+.--.+|+..|..|+|.|
T Consensus 366 ---VVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 366 ---VVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred ---EEEeccccccceeeEeecc
Confidence 2222357999999999987
No 228
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.35 E-value=6.7e-11 Score=95.95 Aligned_cols=203 Identities=19% Similarity=0.244 Sum_probs=137.6
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEe
Q 036510 16 DVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKD 95 (288)
Q Consensus 16 ~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~ 95 (288)
++.|++.|..++++-.+|.+.+-+.+....+.++..++|.-.+|...|+.. +.+++.+||+|+.+.-||++..++++-.
T Consensus 126 slD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~-~pnlvytGgDD~~l~~~D~R~p~~~i~~ 204 (339)
T KOG0280|consen 126 SLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDK-EPNLVYTGGDDGSLSCWDIRIPKTFIWH 204 (339)
T ss_pred EEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccC-CCceEEecCCCceEEEEEecCCcceeee
Confidence 445777888888888888877433333334456678999999999999853 4689999999999999999965554332
Q ss_pred EEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCC
Q 036510 96 HVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPV 175 (288)
Q Consensus 96 ~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~ 175 (288)
. .+.|...|.++.=+|. .+.++++|+.|-.|++||.|+.++ ......-.++|.+|.+.|... .
T Consensus 205 n-~kvH~~GV~SI~ss~~-~~~~I~TGsYDe~i~~~DtRnm~k---Pl~~~~v~GGVWRi~~~p~~~------------~ 267 (339)
T KOG0280|consen 205 N-SKVHTSGVVSIYSSPP-KPTYIATGSYDECIRVLDTRNMGK---PLFKAKVGGGVWRIKHHPEIF------------H 267 (339)
T ss_pred c-ceeeecceEEEecCCC-CCceEEEeccccceeeeehhcccC---ccccCccccceEEEEecchhh------------h
Confidence 2 2347788999887765 467899999999999999996532 111122347899999999763 1
Q ss_pred ceeEEeecCCcEEEEEEeCCceee-eeeeccccCCcceEEEEecCCCCCCCcEEEEEeC-CCcEE-EEE
Q 036510 176 QKLCSGGCDNTVKVWKLYNGIWKM-DCFPALQMHTDWVRDVAWAPNLGLPKSTIASASE-DGKVI-IWT 241 (288)
Q Consensus 176 ~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~-D~~i~-iw~ 241 (288)
.+|+.+...| .+|-++..+.-++ ......+.|.+-+..-+|... ...|||+|. |+.++ +|-
T Consensus 268 ~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~----~~~lATCsFYDk~~~~~Wl 331 (339)
T KOG0280|consen 268 RLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSK----DSFLATCSFYDKKIRQLWL 331 (339)
T ss_pred HHHHHHHhcC-ceEEEecccccchheeeeccccccceeeccccccc----cceeeeeeccccceeeeee
Confidence 2344443333 5555655432221 133445677776666677321 356899885 77755 773
No 229
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.35 E-value=1.6e-10 Score=95.63 Aligned_cols=211 Identities=17% Similarity=0.243 Sum_probs=139.3
Q ss_pred ccccccceEEEEEcCCCCEEEEeeCCCcEEEEEe-CCC-CceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEe
Q 036510 7 ETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGV-GNN-TSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIW 84 (288)
Q Consensus 7 ~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~-~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iw 84 (288)
..||.+.|+....-|...-+.+.+.|.++|+|-- +.. ..+.+..+ -..++..+.+.+. ...|+.+-..|++.=+
T Consensus 20 ~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~--mP~~~~~~~y~~e--~~~L~vg~~ngtvtef 95 (404)
T KOG1409|consen 20 IEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHY--MPSPCSAMEYVSE--SRRLYVGQDNGTVTEF 95 (404)
T ss_pred hcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhh--CCCCceEeeeecc--ceEEEEEEecceEEEE
Confidence 3499999999887777777999999999999953 211 11222222 2355777887653 6788888888998877
Q ss_pred ecCCC-CceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCC-------------------------
Q 036510 85 KEGNS-NEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGG------------------------- 138 (288)
Q Consensus 85 d~~~~-~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~------------------------- 138 (288)
..... +.....+....|..++..+-|+-. ...+++.+.|..+.---.+.+..
T Consensus 96 s~sedfnkm~~~r~~~~h~~~v~~~if~~~--~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~ 173 (404)
T KOG1409|consen 96 ALSEDFNKMTFLKDYLAHQARVSAIVFSLT--HEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDH 173 (404)
T ss_pred EhhhhhhhcchhhhhhhhhcceeeEEecCC--ceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEeccc
Confidence 65321 111122334467788888877643 33455556665553222221111
Q ss_pred -------------eeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeecc
Q 036510 139 -------------WDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPAL 205 (288)
Q Consensus 139 -------------~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 205 (288)
..+.....+|...+.++.|.|.. .+|.+|..|..+.+||+-... .....+
T Consensus 174 ~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~--------------~~LfSg~~d~~vi~wdigg~~---g~~~el 236 (404)
T KOG1409|consen 174 SGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQ--------------RLLFSGASDHSVIMWDIGGRK---GTAYEL 236 (404)
T ss_pred ccceEEEEEeecCCceEEEEcCcccceEEEEEcCCC--------------cEEEeccccCceEEEeccCCc---ceeeee
Confidence 11222344566667777776654 678999999999999985432 234567
Q ss_pred ccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeec
Q 036510 206 QMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAR 244 (288)
Q Consensus 206 ~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~ 244 (288)
.+|.+.|..++..+. ...+.|++.|+.|.+|+.+-
T Consensus 237 ~gh~~kV~~l~~~~~----t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 237 QGHNDKVQALSYAQH----TRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred ccchhhhhhhhhhhh----heeeeeccCCCeEEEEeccc
Confidence 899999999988775 36799999999999999864
No 230
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=4.8e-10 Score=100.67 Aligned_cols=225 Identities=18% Similarity=0.175 Sum_probs=129.0
Q ss_pred cccccceEEEEEcCCCCEEEEeeCC---CcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEE-EeeCCCcEEE
Q 036510 8 TGHEDTVHDVAMDYYGKRLATASSD---YSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILA-SCSFDGTVII 83 (288)
Q Consensus 8 ~~h~~~v~~~~~s~~g~~l~s~~~d---~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~s~d~~v~i 83 (288)
..+...+.+.+|+|||+.|+..+.+ ..|.+||+..+.... +....+.+...+|+++ |+.|+ +.+.++...|
T Consensus 192 ~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~---l~~~~g~~~~~~~SPD--G~~la~~~~~~g~~~I 266 (427)
T PRK02889 192 LSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV---VANFKGSNSAPAWSPD--GRTLAVALSRDGNSQI 266 (427)
T ss_pred ccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE---eecCCCCccceEECCC--CCEEEEEEccCCCceE
Confidence 3566788889999999998877753 348888986543222 3333445567899875 66665 6788888888
Q ss_pred eecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEE-EEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCC
Q 036510 84 WKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLA-CGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTA 162 (288)
Q Consensus 84 wd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~-sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~ 162 (288)
|.+..... ....+..+........|+|++ ..++ +...++...+|.+............. ........|+|++
T Consensus 267 y~~d~~~~--~~~~lt~~~~~~~~~~wSpDG--~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~--g~~~~~~~~SpDG- 339 (427)
T PRK02889 267 YTVNADGS--GLRRLTQSSGIDTEPFFSPDG--RSIYFTSDRGGAPQIYRMPASGGAAQRVTFT--GSYNTSPRISPDG- 339 (427)
T ss_pred EEEECCCC--CcEECCCCCCCCcCeEEcCCC--CEEEEEecCCCCcEEEEEECCCCceEEEecC--CCCcCceEECCCC-
Confidence 86532211 122344455556678899984 4444 34445677777765322111111111 2223457899987
Q ss_pred CCceecccccCCCceeEEeecCC---cEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCC-cEE
Q 036510 163 PGALVGSGFLDPVQKLCSGGCDN---TVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDG-KVI 238 (288)
Q Consensus 163 ~~~~~~~~~~~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~-~i~ 238 (288)
+.++..+.++ .|.+||+.++.. +. +..+ .......|+|++ ++|+.++.++ .-.
T Consensus 340 -------------~~Ia~~s~~~g~~~I~v~d~~~g~~--~~---lt~~-~~~~~p~~spdg----~~l~~~~~~~g~~~ 396 (427)
T PRK02889 340 -------------KLLAYISRVGGAFKLYVQDLATGQV--TA---LTDT-TRDESPSFAPNG----RYILYATQQGGRSV 396 (427)
T ss_pred -------------CEEEEEEccCCcEEEEEEECCCCCe--EE---ccCC-CCccCceECCCC----CEEEEEEecCCCEE
Confidence 5555444333 589999877631 11 1111 234678999985 5677766544 333
Q ss_pred EEEeecCCCcccceEeeccccCeEEEEeecC
Q 036510 239 IWTVAREGDQWEGKVLHDFKTPVYRVSWSLT 269 (288)
Q Consensus 239 iw~~~~~~~~~~~~~~~~~~~~i~~~~~spd 269 (288)
++-+...+. ....+....+.+...+|+|-
T Consensus 397 l~~~~~~g~--~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 397 LAAVSSDGR--IKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred EEEEECCCC--ceEEeecCCCCCCCCccCCC
Confidence 443332211 11222233345666788773
No 231
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.34 E-value=2.2e-10 Score=93.03 Aligned_cols=240 Identities=17% Similarity=0.188 Sum_probs=155.5
Q ss_pred CCC-EEEEeeCCCcEEEEEeCCCC-ceeeEEEeccccCe---EEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeE
Q 036510 22 YGK-RLATASSDYSIKIIGVGNNT-SQHLAKLSGHKGAV---WEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDH 96 (288)
Q Consensus 22 ~g~-~l~s~~~d~~i~lwd~~~~~-~~~~~~~~~h~~~v---~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~ 96 (288)
+|. .|+-+-.+|.|.++..+... ...+..+..-...+ -++.|+. .+..++++-.+|.+.+-+.... ......
T Consensus 83 ~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~--~~~~i~vs~s~G~~~~v~~t~~-~le~vq 159 (339)
T KOG0280|consen 83 DGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDIST--SGTKIFVSDSRGSISGVYETEM-VLEKVQ 159 (339)
T ss_pred CccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeec--cCceEEEEcCCCcEEEEeccee-eeeecc
Confidence 455 56667778889988764221 11122233333233 3566764 3677888888899885433221 122334
Q ss_pred EeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCc
Q 036510 97 VFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQ 176 (288)
Q Consensus 97 ~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~ 176 (288)
.++.|..+++.+.|+-.+ ..++.+|+.|+.++-||+|-+..+ .++..+.|..+|.+|.-+|..+ .
T Consensus 160 ~wk~He~E~Wta~f~~~~-pnlvytGgDD~~l~~~D~R~p~~~-i~~n~kvH~~GV~SI~ss~~~~-------------~ 224 (339)
T KOG0280|consen 160 TWKVHEFEAWTAKFSDKE-PNLVYTGGDDGSLSCWDIRIPKTF-IWHNSKVHTSGVVSIYSSPPKP-------------T 224 (339)
T ss_pred cccccceeeeeeecccCC-CceEEecCCCceEEEEEecCCcce-eeecceeeecceEEEecCCCCC-------------c
Confidence 678899999999998665 467899999999999999955433 3444567899999999887653 6
Q ss_pred eeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcc--cceEe
Q 036510 177 KLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQW--EGKVL 254 (288)
Q Consensus 177 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~--~~~~~ 254 (288)
+++||+.|.+|++||.+.=. +.+.. ..-.+.|+.+.++|.. ...|+.+..-+-.+|-+.+.+.... .....
T Consensus 225 ~I~TGsYDe~i~~~DtRnm~---kPl~~-~~v~GGVWRi~~~p~~---~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~ 297 (339)
T KOG0280|consen 225 YIATGSYDECIRVLDTRNMG---KPLFK-AKVGGGVWRIKHHPEI---FHRLLAACMHNGAKILDSSDKVLEFQIVLPSD 297 (339)
T ss_pred eEEEeccccceeeeehhccc---Ccccc-CccccceEEEEecchh---hhHHHHHHHhcCceEEEecccccchheeeecc
Confidence 89999999999999988521 11111 1123569999999963 2345566666667777776543221 11222
Q ss_pred eccccCeEEEEeecCCCEEEEEeC-CCcEE-EeE
Q 036510 255 HDFKTPVYRVSWSLTGNILAVADG-NNNVT-LWE 286 (288)
Q Consensus 255 ~~~~~~i~~~~~spdg~~l~s~~~-d~~v~-~w~ 286 (288)
+.|.+-.+...|......||+++. |+.++ +|-
T Consensus 298 ~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl 331 (339)
T KOG0280|consen 298 KIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWL 331 (339)
T ss_pred ccccceeeccccccccceeeeeeccccceeeeee
Confidence 345566677777555677888764 67744 774
No 232
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.33 E-value=8.6e-09 Score=84.70 Aligned_cols=180 Identities=15% Similarity=0.223 Sum_probs=119.7
Q ss_pred CcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEecc
Q 036510 33 YSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAP 112 (288)
Q Consensus 33 ~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p 112 (288)
..+.|||- ...+++..+. ...+|.++..+++ .++..- .+.|.||...+... +.+.+..-.+|=--++..|
T Consensus 75 NkviIWDD--~k~~~i~el~-f~~~I~~V~l~r~----riVvvl-~~~I~VytF~~n~k--~l~~~et~~NPkGlC~~~~ 144 (346)
T KOG2111|consen 75 NKVIIWDD--LKERCIIELS-FNSEIKAVKLRRD----RIVVVL-ENKIYVYTFPDNPK--LLHVIETRSNPKGLCSLCP 144 (346)
T ss_pred ceEEEEec--ccCcEEEEEE-eccceeeEEEcCC----eEEEEe-cCeEEEEEcCCChh--heeeeecccCCCceEeecC
Confidence 56999983 2234555554 4678999998753 444433 47899998763321 2333321111111233445
Q ss_pred CCCCeEEEE-EeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCc-EEEE
Q 036510 113 HELGLCLAC-GSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNT-VKVW 190 (288)
Q Consensus 113 ~~~~~~l~s-g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~-i~iw 190 (288)
.....+||. |-.-|.|+|-|+..... ......++|...|.++..+-++ .+++|+|..|+ ||||
T Consensus 145 ~~~k~~LafPg~k~GqvQi~dL~~~~~-~~p~~I~AH~s~Iacv~Ln~~G--------------t~vATaStkGTLIRIF 209 (346)
T KOG2111|consen 145 TSNKSLLAFPGFKTGQVQIVDLASTKP-NAPSIINAHDSDIACVALNLQG--------------TLVATASTKGTLIRIF 209 (346)
T ss_pred CCCceEEEcCCCccceEEEEEhhhcCc-CCceEEEcccCceeEEEEcCCc--------------cEEEEeccCcEEEEEE
Confidence 433334443 34558999998865321 1345667999999999998877 78999999998 7899
Q ss_pred EEeCCceeeeeeeccc-c-CCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecC
Q 036510 191 KLYNGIWKMDCFPALQ-M-HTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVARE 245 (288)
Q Consensus 191 d~~~~~~~~~~~~~~~-~-h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~ 245 (288)
|..++. .+++++ | ....|.+++|||+. ++||.+|+-||++|+.++..
T Consensus 210 dt~~g~----~l~E~RRG~d~A~iy~iaFSp~~----s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 210 DTEDGT----LLQELRRGVDRADIYCIAFSPNS----SWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EcCCCc----EeeeeecCCchheEEEEEeCCCc----cEEEEEcCCCeEEEEEeecC
Confidence 999884 334442 2 23359999999985 78999999999999999863
No 233
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.33 E-value=6.1e-10 Score=92.87 Aligned_cols=234 Identities=20% Similarity=0.271 Sum_probs=145.5
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCC
Q 036510 11 EDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSN 90 (288)
Q Consensus 11 ~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~ 90 (288)
+-.+..++|.+--..++++..|.+|++|+-.......+ -...+..|.+++|.|. .+..|+.|.. +-|+||......
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst~pt~L--ks~sQrnvtclawRPl-saselavgCr-~gIciW~~s~tl 173 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKL--KSVSQRNVTCLAWRPL-SASELAVGCR-AGICIWSDSRTL 173 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCCCCCcee--cchhhcceeEEEeccC-Ccceeeeeec-ceeEEEEcCccc
Confidence 34566778888666689999999999998643211111 1234567999999754 4555665554 678999753211
Q ss_pred ce-----------EEeEEeecCCCceeEEEeccCCCCeEEEEEeC-CCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeC
Q 036510 91 EW-----------IKDHVFEDHKSSVNSIDWAPHELGLCLACGSS-DGNISVFTARADGGWDTSRIDQAHPVGVTSVSWA 158 (288)
Q Consensus 91 ~~-----------~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~ 158 (288)
.. ..+...++| .+|+++.|++| +..+++++. |..|+|||..++..... . .-...++.-+.||
T Consensus 174 n~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~d--gt~l~tAS~gsssi~iWdpdtg~~~pL-~--~~glgg~slLkwS 247 (445)
T KOG2139|consen 174 NANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNED--GTILVTASFGSSSIMIWDPDTGQKIPL-I--PKGLGGFSLLKWS 247 (445)
T ss_pred ccccccccccccchhheeCCCC-ceeeEEEEcCC--CCEEeecccCcceEEEEcCCCCCcccc-c--ccCCCceeeEEEc
Confidence 00 011123456 68999999998 555666644 56899999987654322 1 1234568889999
Q ss_pred CCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEE
Q 036510 159 PSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVI 238 (288)
Q Consensus 159 p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~ 238 (288)
|++ .+|..+..|+..++|......+. ....+ ..++|...+|+|.+ ++|+-+... .=+
T Consensus 248 Pdg--------------d~lfaAt~davfrlw~e~q~wt~--erw~l--gsgrvqtacWspcG----sfLLf~~sg-sp~ 304 (445)
T KOG2139|consen 248 PDG--------------DVLFAATCDAVFRLWQENQSWTK--ERWIL--GSGRVQTACWSPCG----SFLLFACSG-SPR 304 (445)
T ss_pred CCC--------------CEEEEecccceeeeehhccccee--cceec--cCCceeeeeecCCC----CEEEEEEcC-Cce
Confidence 998 67778889999999976432211 11121 23379999999985 334333332 334
Q ss_pred EEEeecCCCcc---------cceEeecc------------ccCeEEEEeecCCCEEEEEe
Q 036510 239 IWTVAREGDQW---------EGKVLHDF------------KTPVYRVSWSLTGNILAVAD 277 (288)
Q Consensus 239 iw~~~~~~~~~---------~~~~~~~~------------~~~i~~~~~spdg~~l~s~~ 277 (288)
+|.++-.++.. +..++.+. .+.+-+++|.|.|.+||+.=
T Consensus 305 lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~f 364 (445)
T KOG2139|consen 305 LYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIF 364 (445)
T ss_pred EEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEE
Confidence 66665432211 11111111 24677899999999999873
No 234
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=4.9e-10 Score=100.90 Aligned_cols=219 Identities=18% Similarity=0.193 Sum_probs=126.6
Q ss_pred ccccccceEEEEEcCCCCEEEEeeCC---CcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEE-EEeeCCC--c
Q 036510 7 ETGHEDTVHDVAMDYYGKRLATASSD---YSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSIL-ASCSFDG--T 80 (288)
Q Consensus 7 ~~~h~~~v~~~~~s~~g~~l~s~~~d---~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~s~d~--~ 80 (288)
++.|...+.+.+|+|||++|+..+.+ ..+.+|++..+....+ ..+.+......|+++ |+.+ ++.+.++ .
T Consensus 199 lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l---~~~~g~~~~~~~SpD--G~~l~~~~s~~g~~~ 273 (433)
T PRK04922 199 ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELV---ASFRGINGAPSFSPD--GRRLALTLSRDGNPE 273 (433)
T ss_pred eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEe---ccCCCCccCceECCC--CCEEEEEEeCCCCce
Confidence 34566678888999999999887744 4588899865433333 333444557889875 6655 4556665 5
Q ss_pred EEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEE-eCCCc--EEEEeecCCCCeeeEEeeccCCCCeeEEEe
Q 036510 81 VIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACG-SSDGN--ISVFTARADGGWDTSRIDQAHPVGVTSVSW 157 (288)
Q Consensus 81 v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg-~~d~~--i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~ 157 (288)
|.+||+.++. ...+..+.......+|+|+ +..++.. ..++. |+++++..+. ..... .+......+.|
T Consensus 274 Iy~~d~~~g~----~~~lt~~~~~~~~~~~spD--G~~l~f~sd~~g~~~iy~~dl~~g~-~~~lt---~~g~~~~~~~~ 343 (433)
T PRK04922 274 IYVMDLGSRQ----LTRLTNHFGIDTEPTWAPD--GKSIYFTSDRGGRPQIYRVAASGGS-AERLT---FQGNYNARASV 343 (433)
T ss_pred EEEEECCCCC----eEECccCCCCccceEECCC--CCEEEEEECCCCCceEEEEECCCCC-eEEee---cCCCCccCEEE
Confidence 8888886653 2234445555567899998 4444444 34555 4455554332 21111 12223446899
Q ss_pred CCCCCCCceecccccCCCceeEEeec-CC--cEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCC
Q 036510 158 APSTAPGALVGSGFLDPVQKLCSGGC-DN--TVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASED 234 (288)
Q Consensus 158 ~p~~~~~~~~~~~~~~~~~~l~s~~~-d~--~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D 234 (288)
+|++ +.++..+. ++ .|.+||+.++.. . .+. +........|+|++ ++|+..+.+
T Consensus 344 SpDG--------------~~Ia~~~~~~~~~~I~v~d~~~g~~--~---~Lt-~~~~~~~p~~spdG----~~i~~~s~~ 399 (433)
T PRK04922 344 SPDG--------------KKIAMVHGSGGQYRIAVMDLSTGSV--R---TLT-PGSLDESPSFAPNG----SMVLYATRE 399 (433)
T ss_pred CCCC--------------CEEEEEECCCCceeEEEEECCCCCe--E---ECC-CCCCCCCceECCCC----CEEEEEEec
Confidence 9987 44543332 22 588999876531 1 222 22234567999984 566666553
Q ss_pred -C--cEEEEEeecCCCcccceEeeccccCeEEEEeec
Q 036510 235 -G--KVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSL 268 (288)
Q Consensus 235 -~--~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~sp 268 (288)
+ .|.++++... ....+....+.+...+|+|
T Consensus 400 ~g~~~L~~~~~~g~----~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 400 GGRGVLAAVSTDGR----VRQRLVSADGEVREPAWSP 432 (433)
T ss_pred CCceEEEEEECCCC----ceEEcccCCCCCCCCccCC
Confidence 3 4666665321 1222333334566677876
No 235
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.31 E-value=1.2e-10 Score=108.37 Aligned_cols=185 Identities=18% Similarity=0.264 Sum_probs=135.8
Q ss_pred CCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeE---EEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEee
Q 036510 69 GSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNS---IDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRID 145 (288)
Q Consensus 69 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~---l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~ 145 (288)
...++.+..++.+-+||...+. ....+....+-...+ +-++++ ..++++|+--+.|.+|+...++. ....
T Consensus 99 ~k~i~l~~~~ns~~i~d~~~~~--~~~~i~~~er~~l~~~~~~g~s~~--~~~i~~gsv~~~iivW~~~~dn~---p~~l 171 (967)
T KOG0974|consen 99 NKKIALVTSRNSLLIRDSKNSS--VLSKIQSDERCTLYSSLIIGDSAE--ELYIASGSVFGEIIVWKPHEDNK---PIRL 171 (967)
T ss_pred cceEEEEEcCceEEEEecccCc--eehhcCCCceEEEEeEEEEeccCc--EEEEEeccccccEEEEeccccCC---ccee
Confidence 4577788888899999875432 111111111111111 122443 56789999999999999874432 2256
Q ss_pred ccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCC
Q 036510 146 QAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPK 225 (288)
Q Consensus 146 ~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~ 225 (288)
.+|.+.+.++.|+.++ +++++.|.|+++|+|++.+.... ....=+|+.+|+.+.|.|+
T Consensus 172 ~GHeG~iF~i~~s~dg--------------~~i~s~SdDRsiRlW~i~s~~~~---~~~~fgHsaRvw~~~~~~n----- 229 (967)
T KOG0974|consen 172 KGHEGSIFSIVTSLDG--------------RYIASVSDDRSIRLWPIDSREVL---GCTGFGHSARVWACCFLPN----- 229 (967)
T ss_pred cccCCceEEEEEccCC--------------cEEEEEecCcceeeeeccccccc---CcccccccceeEEEEeccc-----
Confidence 7899999999999887 89999999999999999886321 1244589999999999985
Q ss_pred cEEEEEeCCCcEEEEEeecCCCcccceEeecc-ccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510 226 STIASASEDGKVIIWTVAREGDQWEGKVLHDF-KTPVYRVSWSLTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 226 ~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~-~~~i~~~~~spdg~~l~s~~~d~~v~~w~~ 287 (288)
+++|++.|-++++|+..-. +.+.+.+| .+.|.+++..++--++++++.|+.+++|+.
T Consensus 230 -~i~t~gedctcrvW~~~~~----~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l 287 (967)
T KOG0974|consen 230 -RIITVGEDCTCRVWGVNGT----QLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDL 287 (967)
T ss_pred -eeEEeccceEEEEEecccc----eehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhh
Confidence 6999999999999976532 12244455 357999999999999999999999999983
No 236
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.29 E-value=3.5e-09 Score=94.89 Aligned_cols=206 Identities=16% Similarity=0.256 Sum_probs=123.7
Q ss_pred CcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCC---CcEEEeecCCCCceEEeEEeecCCCceeEEE
Q 036510 33 YSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFD---GTVIIWKEGNSNEWIKDHVFEDHKSSVNSID 109 (288)
Q Consensus 33 ~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d---~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~ 109 (288)
..+.++|.++. ....+..+...+...+|+++ |+.|+.++.+ ..|.+|++.++.. ..+..+...+.+++
T Consensus 170 ~~l~~~d~~g~---~~~~l~~~~~~~~~p~~Spd--g~~la~~~~~~~~~~i~v~d~~~g~~----~~~~~~~~~~~~~~ 240 (417)
T TIGR02800 170 YELQVADYDGA---NPQTITRSREPILSPAWSPD--GQKLAYVSFESGKPEIYVQDLATGQR----EKVASFPGMNGAPA 240 (417)
T ss_pred ceEEEEcCCCC---CCEEeecCCCceecccCCCC--CCEEEEEEcCCCCcEEEEEECCCCCE----EEeecCCCCccceE
Confidence 34666666432 23445567777889999875 8888876643 4799999876542 12333455677899
Q ss_pred eccCCCCeEEEEEeCCC--cEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeE-EeecCC-
Q 036510 110 WAPHELGLCLACGSSDG--NISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLC-SGGCDN- 185 (288)
Q Consensus 110 ~~p~~~~~~l~sg~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~-s~~~d~- 185 (288)
|+|++ ..++++.+.++ .|++|++..+.. .....+........|+|++ +.|+ ++..++
T Consensus 241 ~spDg-~~l~~~~~~~~~~~i~~~d~~~~~~----~~l~~~~~~~~~~~~s~dg--------------~~l~~~s~~~g~ 301 (417)
T TIGR02800 241 FSPDG-SKLAVSLSKDGNPDIYVMDLDGKQL----TRLTNGPGIDTEPSWSPDG--------------KSIAFTSDRGGS 301 (417)
T ss_pred ECCCC-CEEEEEECCCCCccEEEEECCCCCE----EECCCCCCCCCCEEECCCC--------------CEEEEEECCCCC
Confidence 99984 33444555544 577777765421 1122233334567888876 4444 333333
Q ss_pred -cEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCC---cEEEEEeecCCCcccceEeeccccCe
Q 036510 186 -TVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDG---KVIIWTVAREGDQWEGKVLHDFKTPV 261 (288)
Q Consensus 186 -~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~---~i~iw~~~~~~~~~~~~~~~~~~~~i 261 (288)
.|.++|+.++.. ..+..+...+..+.|+|++ ++|+.++.++ .|.+||+.... ...+... ...
T Consensus 302 ~~iy~~d~~~~~~-----~~l~~~~~~~~~~~~spdg----~~i~~~~~~~~~~~i~~~d~~~~~----~~~l~~~-~~~ 367 (417)
T TIGR02800 302 PQIYMMDADGGEV-----RRLTFRGGYNASPSWSPDG----DLIAFVHREGGGFNIAVMDLDGGG----ERVLTDT-GLD 367 (417)
T ss_pred ceEEEEECCCCCE-----EEeecCCCCccCeEECCCC----CEEEEEEccCCceEEEEEeCCCCC----eEEccCC-CCC
Confidence 466666655421 1223344556788999984 5777777765 67777765421 1222221 123
Q ss_pred EEEEeecCCCEEEEEeCCC
Q 036510 262 YRVSWSLTGNILAVADGNN 280 (288)
Q Consensus 262 ~~~~~spdg~~l~s~~~d~ 280 (288)
....|+|||+.|+.++.++
T Consensus 368 ~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 368 ESPSFAPNGRMILYATTRG 386 (417)
T ss_pred CCceECCCCCEEEEEEeCC
Confidence 4568999999998887654
No 237
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.28 E-value=1.7e-10 Score=95.59 Aligned_cols=212 Identities=17% Similarity=0.273 Sum_probs=137.0
Q ss_pred ccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCC--ceEEeEEeecC------------CCceeEEEeccCCCCeEEE
Q 036510 55 KGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSN--EWIKDHVFEDH------------KSSVNSIDWAPHELGLCLA 120 (288)
Q Consensus 55 ~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~--~~~~~~~~~~h------------~~~v~~l~~~p~~~~~~l~ 120 (288)
.+-+.++.|.+. |++|++|..+|.|-++...... ++.-...+..| ..+|+.++|.++.....++
T Consensus 25 adiis~vef~~~--Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 25 ADIISAVEFDHY--GERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred hcceeeEEeecc--cceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence 455788999875 9999999999999999754322 22222222222 2468899999886555667
Q ss_pred EEeCCCcEEEEeecCCCCee--------------------------------eE-EeeccCCCCeeEEEeCCCCCCCcee
Q 036510 121 CGSSDGNISVFTARADGGWD--------------------------------TS-RIDQAHPVGVTSVSWAPSTAPGALV 167 (288)
Q Consensus 121 sg~~d~~i~i~d~~~~~~~~--------------------------------~~-~~~~~~~~~v~~i~~~p~~~~~~~~ 167 (288)
..++|++|++|.++....-. +. ....+|+..|.+|+++.+.
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~------ 176 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDK------ 176 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCcc------
Confidence 77899999999886422100 00 1123567777788777765
Q ss_pred cccccCCCceeEEeecCCcEEEEEEeCCceeeeeee----ccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEee
Q 036510 168 GSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFP----ALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVA 243 (288)
Q Consensus 168 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~----~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~ 243 (288)
..+.|+ .|=.|.||++.-....+..+. .+..-..-|++..|+|.. -..|+-.|+-|+|++-|++
T Consensus 177 --------Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~---cn~f~YSSSKGtIrLcDmR 244 (433)
T KOG1354|consen 177 --------ETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHH---CNVFVYSSSKGTIRLCDMR 244 (433)
T ss_pred --------ceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhH---ccEEEEecCCCcEEEeech
Confidence 445554 456788998864322222211 112223357888999974 3678889999999999998
Q ss_pred cCCCcc-------------cceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510 244 REGDQW-------------EGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 244 ~~~~~~-------------~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~ 287 (288)
....+. ....+.+.-..|..++|+++|+++++=+ --+|+|||.
T Consensus 245 ~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~ 300 (433)
T KOG1354|consen 245 QSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDL 300 (433)
T ss_pred hhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEec
Confidence 432110 0011112234688999999999998764 389999995
No 238
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.28 E-value=2.7e-09 Score=96.21 Aligned_cols=218 Identities=14% Similarity=0.130 Sum_probs=127.7
Q ss_pred ccccccceEEEEEcCCCCEEEEeeC---CCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEE-EEeeCCCc--
Q 036510 7 ETGHEDTVHDVAMDYYGKRLATASS---DYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSIL-ASCSFDGT-- 80 (288)
Q Consensus 7 ~~~h~~~v~~~~~s~~g~~l~s~~~---d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~s~d~~-- 80 (288)
++.|...+...+|+|||+.|+..+. +..|.+||+..+.. ..+..+.+.+...+|+++ |+.| ++.+.++.
T Consensus 197 lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~---~~l~~~~g~~~~~~~SPD--G~~la~~~~~~g~~~ 271 (435)
T PRK05137 197 LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR---ELVGNFPGMTFAPRFSPD--GRKVVMSLSQGGNTD 271 (435)
T ss_pred EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE---EEeecCCCcccCcEECCC--CCEEEEEEecCCCce
Confidence 4567788999999999999887764 46799999864432 344556667788899875 6655 46666766
Q ss_pred EEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEe-CCC--cEEEEeecCCCCeeeEEeeccCCCCeeEEEe
Q 036510 81 VIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGS-SDG--NISVFTARADGGWDTSRIDQAHPVGVTSVSW 157 (288)
Q Consensus 81 v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~-~d~--~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~ 157 (288)
|.+||+..+. ...+..+........|+|++ ..++..+ .++ .|+++|+..+. ... . ..+...+....|
T Consensus 272 Iy~~d~~~~~----~~~Lt~~~~~~~~~~~spDG--~~i~f~s~~~g~~~Iy~~d~~g~~-~~~--l-t~~~~~~~~~~~ 341 (435)
T PRK05137 272 IYTMDLRSGT----TTRLTDSPAIDTSPSYSPDG--SQIVFESDRSGSPQLYVMNADGSN-PRR--I-SFGGGRYSTPVW 341 (435)
T ss_pred EEEEECCCCc----eEEccCCCCccCceeEcCCC--CEEEEEECCCCCCeEEEEECCCCC-eEE--e-ecCCCcccCeEE
Confidence 5555765543 23344455566788999984 4444443 333 56667764322 211 1 122334567889
Q ss_pred CCCCCCCceecccccCCCceeEEeecC---CcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCC
Q 036510 158 APSTAPGALVGSGFLDPVQKLCSGGCD---NTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASED 234 (288)
Q Consensus 158 ~p~~~~~~~~~~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D 234 (288)
+|++ +.++..+.+ ..|.+||+..+.. .. +. ....+.+..|+|++ ++|+..+.+
T Consensus 342 SpdG--------------~~ia~~~~~~~~~~i~~~d~~~~~~--~~---lt-~~~~~~~p~~spDG----~~i~~~~~~ 397 (435)
T PRK05137 342 SPRG--------------DLIAFTKQGGGQFSIGVMKPDGSGE--RI---LT-SGFLVEGPTWAPNG----RVIMFFRQT 397 (435)
T ss_pred CCCC--------------CEEEEEEcCCCceEEEEEECCCCce--Ee---cc-CCCCCCCCeECCCC----CEEEEEEcc
Confidence 9987 445443322 3577778654321 11 11 11236778999985 566655442
Q ss_pred ------CcEEEEEeecCCCcccceEeeccccCeEEEEeec
Q 036510 235 ------GKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSL 268 (288)
Q Consensus 235 ------~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~sp 268 (288)
..+.+.++.... ...+.. ...+...+|+|
T Consensus 398 ~~~~~~~~L~~~dl~g~~----~~~l~~-~~~~~~p~Wsp 432 (435)
T PRK05137 398 PGSGGAPKLYTVDLTGRN----EREVPT-PGDASDPAWSP 432 (435)
T ss_pred CCCCCcceEEEEECCCCc----eEEccC-CCCccCcccCC
Confidence 245555554221 122221 23356677776
No 239
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.27 E-value=7.7e-12 Score=106.93 Aligned_cols=229 Identities=17% Similarity=0.197 Sum_probs=158.7
Q ss_pred cceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCc
Q 036510 12 DTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNE 91 (288)
Q Consensus 12 ~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~ 91 (288)
..|.++.|-...+++|.+- -+.+.+||-. +..++++..|. .|..+.|-|. --+|++++..|.++.-|+..+.
T Consensus 171 Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~---GtElHClk~~~-~v~rLeFLPy--HfLL~~~~~~G~L~Y~DVS~Gk- 242 (545)
T KOG1272|consen 171 ETVRDVTFLHNEQFFAVAQ-KKYVYVYDNN---GTELHCLKRHI-RVARLEFLPY--HFLLVAASEAGFLKYQDVSTGK- 242 (545)
T ss_pred hhhhhhhhhcchHHHHhhh-hceEEEecCC---CcEEeehhhcC-chhhhcccch--hheeeecccCCceEEEeechhh-
Confidence 4566667766666666554 4567888853 35577777654 5788998764 4578899999999999998765
Q ss_pred eEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccc
Q 036510 92 WIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGF 171 (288)
Q Consensus 92 ~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~ 171 (288)
.+..+..-.+.+..++-+|- +-++-.|...|+|.+|...... ++.....|..+|.+|++.|.+
T Consensus 243 --lVa~~~t~~G~~~vm~qNP~--NaVih~GhsnGtVSlWSP~ske---PLvKiLcH~g~V~siAv~~~G---------- 305 (545)
T KOG1272|consen 243 --LVASIRTGAGRTDVMKQNPY--NAVIHLGHSNGTVSLWSPNSKE---PLVKILCHRGPVSSIAVDRGG---------- 305 (545)
T ss_pred --hhHHHHccCCccchhhcCCc--cceEEEcCCCceEEecCCCCcc---hHHHHHhcCCCcceEEECCCC----------
Confidence 23333334566777777886 4567788999999999876542 223345799999999999987
Q ss_pred cCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccc
Q 036510 172 LDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEG 251 (288)
Q Consensus 172 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~ 251 (288)
++++|.|.|+.++|||++.- ..++++.. ......++||-- -+++.|....+.||.-.........
T Consensus 306 ----~YMaTtG~Dr~~kIWDlR~~----~ql~t~~t-p~~a~~ls~Sqk------glLA~~~G~~v~iw~d~~~~s~~~~ 370 (545)
T KOG1272|consen 306 ----RYMATTGLDRKVKIWDLRNF----YQLHTYRT-PHPASNLSLSQK------GLLALSYGDHVQIWKDALKGSGHGE 370 (545)
T ss_pred ----cEEeecccccceeEeeeccc----cccceeec-CCCccccccccc------cceeeecCCeeeeehhhhcCCCCCC
Confidence 89999999999999999863 23333332 234677788753 3667777779999975433211111
Q ss_pred eE--eeccccCeEEEEeecCCCEEEEEeCCC
Q 036510 252 KV--LHDFKTPVYRVSWSLTGNILAVADGNN 280 (288)
Q Consensus 252 ~~--~~~~~~~i~~~~~spdg~~l~s~~~d~ 280 (288)
.+ .|-..++|..+.|-|-...|-.|-.-|
T Consensus 371 ~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G 401 (545)
T KOG1272|consen 371 TPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG 401 (545)
T ss_pred cchhhhccCcccccceeccHHHeeeccccCC
Confidence 22 233456899999999877776664443
No 240
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.27 E-value=2.1e-10 Score=106.65 Aligned_cols=197 Identities=19% Similarity=0.237 Sum_probs=143.2
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccC-----eEEEEecCCCCCCEEEEeeCCCcEEEee
Q 036510 11 EDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGA-----VWEVAWAHPKFGSILASCSFDGTVIIWK 85 (288)
Q Consensus 11 ~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~-----v~~~~~~~~~~~~~l~s~s~d~~v~iwd 85 (288)
.+.|....+..+...++.+..+..+-+||..... +..-..|... ..-+..+. +.-++++|+.-+.+.+|.
T Consensus 87 s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~---~~~~i~~~er~~l~~~~~~g~s~--~~~~i~~gsv~~~iivW~ 161 (967)
T KOG0974|consen 87 SDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSS---VLSKIQSDERCTLYSSLIIGDSA--EELYIASGSVFGEIIVWK 161 (967)
T ss_pred cccccccchhhhcceEEEEEcCceEEEEecccCc---eehhcCCCceEEEEeEEEEeccC--cEEEEEeccccccEEEEe
Confidence 3455556677777888888889999999985432 1111112211 11122222 367899999999999999
Q ss_pred cCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCc
Q 036510 86 EGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGA 165 (288)
Q Consensus 86 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~ 165 (288)
..-.+ ....+.+|.+.|..+.|+-+ +.++++.+.|.++|+|++.+..... ...=+|+..+..+.|.|+
T Consensus 162 ~~~dn---~p~~l~GHeG~iF~i~~s~d--g~~i~s~SdDRsiRlW~i~s~~~~~--~~~fgHsaRvw~~~~~~n----- 229 (967)
T KOG0974|consen 162 PHEDN---KPIRLKGHEGSIFSIVTSLD--GRYIASVSDDRSIRLWPIDSREVLG--CTGFGHSARVWACCFLPN----- 229 (967)
T ss_pred ccccC---CcceecccCCceEEEEEccC--CcEEEEEecCcceeeeecccccccC--cccccccceeEEEEeccc-----
Confidence 86322 22357899999999999877 7899999999999999997653321 123368999999998884
Q ss_pred eecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCc-ceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeec
Q 036510 166 LVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTD-WVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAR 244 (288)
Q Consensus 166 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~-~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~ 244 (288)
.++|+++|-++++|+.... ....+.+|.. .|+.+...++. -.++|++.|+.+++|+...
T Consensus 230 -----------~i~t~gedctcrvW~~~~~-----~l~~y~~h~g~~iw~~~~~~~~----~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 230 -----------RIITVGEDCTCRVWGVNGT-----QLEVYDEHSGKGIWKIAVPIGV----IIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred -----------eeEEeccceEEEEEecccc-----eehhhhhhhhcceeEEEEcCCc----eEEEeeccCcchhhhhhhc
Confidence 5999999999999976543 3336666755 48999988863 5799999999999999864
No 241
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.27 E-value=3.4e-10 Score=92.71 Aligned_cols=253 Identities=17% Similarity=0.251 Sum_probs=160.0
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCc---eeeEEEecccc------------CeEEEEecCCCCCCEEEEe
Q 036510 11 EDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTS---QHLAKLSGHKG------------AVWEVAWAHPKFGSILASC 75 (288)
Q Consensus 11 ~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~---~~~~~~~~h~~------------~v~~~~~~~~~~~~~l~s~ 75 (288)
.+.|++|.|...|.||++|...|.|-++......+ +.+..+++|.. .|..+.|..+..-..|+-.
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 36788899999999999999999999997643221 12233455553 3688999876555678888
Q ss_pred eCCCcEEEeecCCCC-------------------c-----------------eE---EeEEe-ecCCCceeEEEeccCCC
Q 036510 76 SFDGTVIIWKEGNSN-------------------E-----------------WI---KDHVF-EDHKSSVNSIDWAPHEL 115 (288)
Q Consensus 76 s~d~~v~iwd~~~~~-------------------~-----------------~~---~~~~~-~~h~~~v~~l~~~p~~~ 115 (288)
..|++|++|.+...+ . .+ +.+.+ ..|...+++++|+.+
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD-- 183 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSD-- 183 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCc--
Confidence 999999999764321 0 00 00111 357778999999887
Q ss_pred CeEEEEEeCCCcEEEEeecCC-CCeeeEEeeccCC-----CCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEE
Q 036510 116 GLCLACGSSDGNISVFTARAD-GGWDTSRIDQAHP-----VGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKV 189 (288)
Q Consensus 116 ~~~l~sg~~d~~i~i~d~~~~-~~~~~~~~~~~~~-----~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i 189 (288)
...++++ .|=.|.+|++... +.+..+. .+.|+ .-|++..|+|..- ..+.-++..|.|+|
T Consensus 184 ~et~lSa-DdLrINLWnl~i~D~sFnIVD-iKP~nmeeLteVItSaeFhp~~c-------------n~fmYSsSkG~Ikl 248 (460)
T COG5170 184 KETLLSA-DDLRINLWNLEIIDGSFNIVD-IKPHNMEELTEVITSAEFHPEMC-------------NVFMYSSSKGEIKL 248 (460)
T ss_pred hheeeec-cceeeeeccccccCCceEEEe-ccCccHHHHHHHHhhcccCHhHc-------------ceEEEecCCCcEEe
Confidence 3445544 5668899988653 3333322 23343 3477888888752 44555566899999
Q ss_pred EEEeCCc-----ee-ee----e--eeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeec-
Q 036510 190 WKLYNGI-----WK-MD----C--FPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHD- 256 (288)
Q Consensus 190 wd~~~~~-----~~-~~----~--~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~- 256 (288)
-|++... .. ++ . ..-+.+-...|..+.|+|++ .+|++- +-.+++|||.+..+.+..-.+++.
T Consensus 249 ~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ng----ryIlsR-dyltvkiwDvnm~k~pikTi~~h~~ 323 (460)
T COG5170 249 NDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNG----RYILSR-DYLTVKIWDVNMAKNPIKTIPMHCD 323 (460)
T ss_pred hhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCC----cEEEEe-ccceEEEEecccccCCceeechHHH
Confidence 9998421 00 00 0 01122334468899999984 566544 345899999986544321111221
Q ss_pred --------cc-cCe---EEEEeecCCCEEEEEeCCCcEEEe
Q 036510 257 --------FK-TPV---YRVSWSLTGNILAVADGNNNVTLW 285 (288)
Q Consensus 257 --------~~-~~i---~~~~~spdg~~l~s~~~d~~v~~w 285 (288)
+. ..| ..+.||-|.+.+++|+-.+..-++
T Consensus 324 l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiy 364 (460)
T COG5170 324 LMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIY 364 (460)
T ss_pred HHHHHHhhhhccceeeeEEEEecCCcccccccccccceeee
Confidence 11 123 468999999999999877665554
No 242
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.24 E-value=1.2e-10 Score=113.55 Aligned_cols=182 Identities=18% Similarity=0.311 Sum_probs=130.2
Q ss_pred cCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEee
Q 036510 20 DYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFE 99 (288)
Q Consensus 20 s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~ 99 (288)
.|.-.+.++|+.||.+++|.+..+..-......|. ..|+.+.|++. |+.+..+..||.+.+|... .. ......
T Consensus 2217 Hp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~-s~vtr~~f~~q--Gnk~~i~d~dg~l~l~q~~-pk---~~~s~q 2289 (2439)
T KOG1064|consen 2217 HPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN-SRVTRSRFNHQ--GNKFGIVDGDGDLSLWQAS-PK---PYTSWQ 2289 (2439)
T ss_pred CCCCceEEecCCCceEEEEeccCCCeEEEeeccCc-chhhhhhhccc--CCceeeeccCCceeecccC-Cc---ceeccc
Confidence 45667899999999999999854432223333444 88999999875 8999999999999999875 22 223344
Q ss_pred cCCCceeEEEeccCCCCeEEEEE--eCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCce
Q 036510 100 DHKSSVNSIDWAPHELGLCLACG--SSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQK 177 (288)
Q Consensus 100 ~h~~~v~~l~~~p~~~~~~l~sg--~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~ 177 (288)
-|........|-.. .++-+| +.++++.+||.-...... .+..+|..+++++.+.|.. ++
T Consensus 2290 chnk~~~Df~Fi~s---~~~tag~s~d~~n~~lwDtl~~~~~s--~v~~~H~~gaT~l~~~P~~--------------ql 2350 (2439)
T KOG1064|consen 2290 CHNKALSDFRFIGS---LLATAGRSSDNRNVCLWDTLLPPMNS--LVHTCHDGGATVLAYAPKH--------------QL 2350 (2439)
T ss_pred cCCccccceeeeeh---hhhccccCCCCCcccchhcccCcccc--eeeeecCCCceEEEEcCcc--------------eE
Confidence 57766666666542 112222 455789999975432211 2337899999999999987 88
Q ss_pred eEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecC
Q 036510 178 LCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVARE 245 (288)
Q Consensus 178 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~ 245 (288)
|+|||.+|-|++||++.. ++++.+.. +.. ..+|++|+..|+|+||++...
T Consensus 2351 lisggr~G~v~l~D~rqr----ql~h~~~~---------~~~-----~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2351 LISGGRKGEVCLFDIRQR----QLRHTFQA---------LDT-----REYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred EEecCCcCcEEEeehHHH----HHHHHhhh---------hhh-----hheeeccCcccceEEEEcccc
Confidence 999999999999999764 23333322 221 358999999999999999864
No 243
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.22 E-value=6.9e-10 Score=91.56 Aligned_cols=257 Identities=16% Similarity=0.304 Sum_probs=150.7
Q ss_pred cceEEEEEcCCCCE-EEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCC-CEEEEeeCCCcEEEeecCCC
Q 036510 12 DTVHDVAMDYYGKR-LATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFG-SILASCSFDGTVIIWKEGNS 89 (288)
Q Consensus 12 ~~v~~~~~s~~g~~-l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~s~d~~v~iwd~~~~ 89 (288)
+.|.-+.|..|.-+ |-....|+.|.+|++..+ +.-..++.-.+++.+++|||+ | .+|.+...|-.|.+|.+.+.
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qp--ew~ckIdeg~agls~~~WSPd--grhiL~tseF~lriTVWSL~t~ 124 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQP--EWYCKIDEGQAGLSSISWSPD--GRHILLTSEFDLRITVWSLNTQ 124 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecc--eeEEEeccCCCcceeeeECCC--cceEeeeecceeEEEEEEeccc
Confidence 45556778877644 555677899999999655 445566777888999999976 5 67778889999999998765
Q ss_pred CceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCcee--
Q 036510 90 NEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALV-- 167 (288)
Q Consensus 90 ~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~-- 167 (288)
... .++-.+..+..++|+|+ +++.+..+.-.-.-.+++-.-..|...+..+-.+...+.|.|+|++...++.
T Consensus 125 ~~~----~~~~pK~~~kg~~f~~d--g~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~ 198 (447)
T KOG4497|consen 125 KGY----LLPHPKTNVKGYAFHPD--GQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDN 198 (447)
T ss_pred eeE----EecccccCceeEEECCC--CceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecc
Confidence 422 23333445788999998 5555544321111111111011111111111122334556666666321110
Q ss_pred -------------cc---cccCCCceeEEeecCCcEEEEEEe-----CC-------------------------------
Q 036510 168 -------------GS---GFLDPVQKLCSGGCDNTVKVWKLY-----NG------------------------------- 195 (288)
Q Consensus 168 -------------~~---~~~~~~~~l~s~~~d~~i~iwd~~-----~~------------------------------- 195 (288)
+. ......++|+.|+.|+.+|+.+-. ..
T Consensus 199 ~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLs 278 (447)
T KOG4497|consen 199 VLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLS 278 (447)
T ss_pred hhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccc
Confidence 00 112335889999999999885431 00
Q ss_pred ---------ce-------eee----eeeccc------cCCcceEEEEecCCCCCCCcEEEEEeC--CCcEEEEEeecCCC
Q 036510 196 ---------IW-------KMD----CFPALQ------MHTDWVRDVAWAPNLGLPKSTIASASE--DGKVIIWTVAREGD 247 (288)
Q Consensus 196 ---------~~-------~~~----~~~~~~------~h~~~V~~v~~sp~~~~~~~~l~s~s~--D~~i~iw~~~~~~~ 247 (288)
.+ ++. .++.++ ...-.+.-++|++|. +++++-.+ -+.+-+||++..+.
T Consensus 279 f~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds----~y~aTrnd~~PnalW~Wdlq~l~l 354 (447)
T KOG4497|consen 279 FTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDS----TYAATRNDKYPNALWLWDLQNLKL 354 (447)
T ss_pred cCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCc----eEEeeecCCCCceEEEEechhhhh
Confidence 00 000 001111 112246678999984 56666654 45799999875321
Q ss_pred cccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510 248 QWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE 286 (288)
Q Consensus 248 ~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~ 286 (288)
. .-++ -..+|....|.|.-..|+.......+.+|-
T Consensus 355 ~--avLi--Qk~piraf~WdP~~prL~vctg~srLY~W~ 389 (447)
T KOG4497|consen 355 H--AVLI--QKHPIRAFEWDPGRPRLVVCTGKSRLYFWA 389 (447)
T ss_pred h--hhhh--hccceeEEEeCCCCceEEEEcCCceEEEEc
Confidence 1 0111 135899999999999999998877888885
No 244
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.18 E-value=2.4e-10 Score=94.22 Aligned_cols=224 Identities=17% Similarity=0.246 Sum_probs=132.9
Q ss_pred EEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeE
Q 036510 17 VAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDH 96 (288)
Q Consensus 17 ~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~ 96 (288)
.+|||+|+|+|+.+.- .+-|-|.. +.+. .++-.--+.|..+.|..+ ...+|.....|+.|.+|++...+ |. .
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~--tlq~-~qlf~cldki~yieW~ad-s~~ilC~~yk~~~vqvwsl~Qpe-w~--c 85 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSE--TLQL-HQLFLCLDKIVYIEWKAD-SCHILCVAYKDPKVQVWSLVQPE-WY--C 85 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccc--hhhH-HHHHHHHHHhhheeeecc-ceeeeeeeeccceEEEEEeecce-eE--E
Confidence 4799999999998755 44444432 2221 111112356778999864 23445556789999999997543 42 2
Q ss_pred EeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCc
Q 036510 97 VFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQ 176 (288)
Q Consensus 97 ~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~ 176 (288)
.+......+.+++|+|++ -.+|.+...|-.|.+|.+.+...... +.-+..+.-++|.|++ +
T Consensus 86 kIdeg~agls~~~WSPdg-rhiL~tseF~lriTVWSL~t~~~~~~----~~pK~~~kg~~f~~dg--------------~ 146 (447)
T KOG4497|consen 86 KIDEGQAGLSSISWSPDG-RHILLTSEFDLRITVWSLNTQKGYLL----PHPKTNVKGYAFHPDG--------------Q 146 (447)
T ss_pred EeccCCCcceeeeECCCc-ceEeeeecceeEEEEEEeccceeEEe----cccccCceeEEECCCC--------------c
Confidence 344556789999999994 25677888999999999976533221 1112235778889987 4
Q ss_pred eeEEeecCCcEEEEEEeC-CceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEee
Q 036510 177 KLCSGGCDNTVKVWKLYN-GIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLH 255 (288)
Q Consensus 177 ~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~ 255 (288)
+.+-.+.....-...+.. ..+ ..+..++...--...+.|+||+ +. +.+||--.. .+....
T Consensus 147 f~ai~sRrDCkdyv~i~~c~~W--~ll~~f~~dT~DltgieWsPdg----~~---------laVwd~~Le----ykv~aY 207 (447)
T KOG4497|consen 147 FCAILSRRDCKDYVQISSCKAW--ILLKEFKLDTIDLTGIEWSPDG----NW---------LAVWDNVLE----YKVYAY 207 (447)
T ss_pred eeeeeecccHHHHHHHHhhHHH--HHHHhcCCCcccccCceECCCC----cE---------EEEecchhh----heeeee
Confidence 444443322111111110 000 0111222222235678999974 33 557763211 011122
Q ss_pred ccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510 256 DFKTPVYRVSWSLTGNILAVADGNNNVTLWE 286 (288)
Q Consensus 256 ~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~ 286 (288)
+-+-.+..++|+|-+++|++|+.|+.+||.+
T Consensus 208 e~~lG~k~v~wsP~~qflavGsyD~~lrvln 238 (447)
T KOG4497|consen 208 ERGLGLKFVEWSPCNQFLAVGSYDQMLRVLN 238 (447)
T ss_pred eeccceeEEEeccccceEEeeccchhhhhhc
Confidence 2234588899999999999999999998754
No 245
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.13 E-value=5.3e-08 Score=87.38 Aligned_cols=222 Identities=13% Similarity=0.128 Sum_probs=117.2
Q ss_pred ceEEEEEcCCCCE--E-EEeeCCCc--EEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeC-CC----cEE
Q 036510 13 TVHDVAMDYYGKR--L-ATASSDYS--IKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSF-DG----TVI 82 (288)
Q Consensus 13 ~v~~~~~s~~g~~--l-~s~~~d~~--i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-d~----~v~ 82 (288)
.+.+=.|+|||+. + .....++. |.+.+++.+....+..+ .+.....+|+|+ |+.|+..+. +| .+.
T Consensus 186 ~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~---~g~~~~p~wSPD--G~~Laf~s~~~g~~di~~~ 260 (428)
T PRK01029 186 LSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILAL---QGNQLMPTFSPR--KKLLAFISDRYGNPDLFIQ 260 (428)
T ss_pred CcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecC---CCCccceEECCC--CCEEEEEECCCCCcceeEE
Confidence 3445579999974 2 24444444 55556655444444333 334456789875 777775543 23 344
Q ss_pred EeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEE-EeCCCcEEEEeecC--CCCeeeEEeeccCCCCeeEEEeCC
Q 036510 83 IWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLAC-GSSDGNISVFTARA--DGGWDTSRIDQAHPVGVTSVSWAP 159 (288)
Q Consensus 83 iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~s-g~~d~~i~i~d~~~--~~~~~~~~~~~~~~~~v~~i~~~p 159 (288)
+|++..+..-........+.......+|+|++ ..++. ...++...+|.+.. .+. .......+...+....|+|
T Consensus 261 ~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG--~~Laf~s~~~g~~~ly~~~~~~~g~--~~~~lt~~~~~~~~p~wSP 336 (428)
T PRK01029 261 SFSLETGAIGKPRRLLNEAFGTQGNPSFSPDG--TRLVFVSNKDGRPRIYIMQIDPEGQ--SPRLLTKKYRNSSCPAWSP 336 (428)
T ss_pred EeecccCCCCcceEeecCCCCCcCCeEECCCC--CEEEEEECCCCCceEEEEECccccc--ceEEeccCCCCccceeECC
Confidence 46654421111112222222344678999984 44443 34566656665432 111 1122223334567889999
Q ss_pred CCCCCceecccccCCCceeEEe-ecC--CcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEE-EEeCC-
Q 036510 160 STAPGALVGSGFLDPVQKLCSG-GCD--NTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIA-SASED- 234 (288)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~l~s~-~~d--~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~-s~s~D- 234 (288)
++ +.|+.. ..+ ..|.+||+.++.. + .+......+.+..|+|++ ++|+ ++..+
T Consensus 337 DG--------------~~Laf~~~~~g~~~I~v~dl~~g~~--~---~Lt~~~~~~~~p~wSpDG----~~L~f~~~~~g 393 (428)
T PRK01029 337 DG--------------KKIAFCSVIKGVRQICVYDLATGRD--Y---QLTTSPENKESPSWAIDS----LHLVYSAGNSN 393 (428)
T ss_pred CC--------------CEEEEEEcCCCCcEEEEEECCCCCe--E---EccCCCCCccceEECCCC----CEEEEEECCCC
Confidence 98 444433 222 3688999877632 1 222223346778999985 4555 34333
Q ss_pred -CcEEEEEeecCCCcccceEeeccccCeEEEEeecCC
Q 036510 235 -GKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTG 270 (288)
Q Consensus 235 -~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg 270 (288)
..|.++++.... ...+....+.+...+|+|-+
T Consensus 394 ~~~L~~vdl~~g~----~~~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 394 ESELYLISLITKK----TRKIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred CceEEEEECCCCC----EEEeecCCCcccCceecCCC
Confidence 457777765321 12333333446678888754
No 246
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.13 E-value=7.8e-10 Score=99.82 Aligned_cols=249 Identities=17% Similarity=0.182 Sum_probs=154.3
Q ss_pred ceEEEEEcCC---CCEEEEeeCCCcEEEEEeCCCCc-eeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCC
Q 036510 13 TVHDVAMDYY---GKRLATASSDYSIKIIGVGNNTS-QHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGN 88 (288)
Q Consensus 13 ~v~~~~~s~~---g~~l~s~~~d~~i~lwd~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~ 88 (288)
.|-.++|+|. ...+++.+..++| +|++..... ..-..+-||...|+++.|.+ +...++++++.|..+..||++.
T Consensus 69 ~vad~qws~h~a~~~wiVsts~qkai-iwnlA~ss~~aIef~lhghsraitd~n~~~-q~pdVlatcsvdt~vh~wd~rS 146 (1081)
T KOG0309|consen 69 QVADVQWSPHPAKPYWIVSTSNQKAI-IWNLAKSSSNAIEFVLHGHSRAITDINFNP-QHPDVLATCSVDTYVHAWDMRS 146 (1081)
T ss_pred hhcceecccCCCCceeEEecCcchhh-hhhhhcCCccceEEEEecCccceeccccCC-CCCcceeeccccccceeeeccC
Confidence 4456678874 3458888877765 788754322 22345789999999999964 4678999999999999999987
Q ss_pred CCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceec
Q 036510 89 SNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVG 168 (288)
Q Consensus 89 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~ 168 (288)
...+ ...+..-......++|+-.+ +..+ +.+..+.|++||++.+.. ++...++|...|..++|.....
T Consensus 147 p~~p--~ys~~~w~s~asqVkwnyk~-p~vl-asshg~~i~vwd~r~gs~--pl~s~K~~vs~vn~~~fnr~~~------ 214 (1081)
T KOG0309|consen 147 PHRP--FYSTSSWRSAASQVKWNYKD-PNVL-ASSHGNDIFVWDLRKGST--PLCSLKGHVSSVNSIDFNRFKY------ 214 (1081)
T ss_pred CCcc--eeeeecccccCceeeecccC-cchh-hhccCCceEEEeccCCCc--ceEEecccceeeehHHHhhhhh------
Confidence 6532 22233334466788887653 3333 345667899999998753 4455667877788888876542
Q ss_pred ccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCC--
Q 036510 169 SGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREG-- 246 (288)
Q Consensus 169 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~-- 246 (288)
..+.+++.|++|+.||......+-+ ....-..+|+.-+|-|-+. +.++----.++.+.+++.+...
T Consensus 215 -------s~~~s~~~d~tvkfw~y~kSt~e~~---~~vtt~~piw~~r~~Pfg~--g~~~mp~~G~n~v~~~~c~n~d~e 282 (1081)
T KOG0309|consen 215 -------SEIMSSSNDGTVKFWDYSKSTTESK---RTVTTNFPIWRGRYLPFGE--GYCIMPMVGGNMVPQLRCENSDLE 282 (1081)
T ss_pred -------hhhcccCCCCceeeecccccccccc---eeccccCcceeccccccCc--eeEeccccCCeeeeeccccchhhh
Confidence 5678899999999999876432111 1122334566666666431 1122111223344444433210
Q ss_pred -----CcccceEeeccccCeEEEEeecCC----------CEEEEEeCCCcEEEeEc
Q 036510 247 -----DQWEGKVLHDFKTPVYRVSWSLTG----------NILAVADGNNNVTLWEE 287 (288)
Q Consensus 247 -----~~~~~~~~~~~~~~i~~~~~spdg----------~~l~s~~~d~~v~~w~~ 287 (288)
.....-.+.+|...|....|-..+ -+|++=|.|-++|+|.+
T Consensus 283 ~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI 338 (1081)
T KOG0309|consen 283 WNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPI 338 (1081)
T ss_pred hccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeec
Confidence 011112233455555444333222 36899999999999975
No 247
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.12 E-value=2.9e-08 Score=88.98 Aligned_cols=189 Identities=20% Similarity=0.210 Sum_probs=111.8
Q ss_pred cccccceEEEEEcCCCCEEEEeeCC---CcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEE-EeeCCC--cE
Q 036510 8 TGHEDTVHDVAMDYYGKRLATASSD---YSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILA-SCSFDG--TV 81 (288)
Q Consensus 8 ~~h~~~v~~~~~s~~g~~l~s~~~d---~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~s~d~--~v 81 (288)
..+...+...+|+|||++|+.++.+ ..|++|++..+.. ..+..+...+.+++|+++ ++.|+ +.+.++ .|
T Consensus 186 ~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~---~~~~~~~~~~~~~~~spD--g~~l~~~~~~~~~~~i 260 (417)
T TIGR02800 186 TRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR---EKVASFPGMNGAPAFSPD--GSKLAVSLSKDGNPDI 260 (417)
T ss_pred ecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE---EEeecCCCCccceEECCC--CCEEEEEECCCCCccE
Confidence 3456677888999999999877654 4788999864422 223445556677899865 66554 555554 57
Q ss_pred EEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEE-EeCCC--cEEEEeecCCCCeeeEEeeccCCCCeeEEEeC
Q 036510 82 IIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLAC-GSSDG--NISVFTARADGGWDTSRIDQAHPVGVTSVSWA 158 (288)
Q Consensus 82 ~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~s-g~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~ 158 (288)
.+|++.++. ...+..+........|+|+ +..++. ...++ .|.++++..+. .. ....+......+.|+
T Consensus 261 ~~~d~~~~~----~~~l~~~~~~~~~~~~s~d--g~~l~~~s~~~g~~~iy~~d~~~~~-~~---~l~~~~~~~~~~~~s 330 (417)
T TIGR02800 261 YVMDLDGKQ----LTRLTNGPGIDTEPSWSPD--GKSIAFTSDRGGSPQIYMMDADGGE-VR---RLTFRGGYNASPSWS 330 (417)
T ss_pred EEEECCCCC----EEECCCCCCCCCCEEECCC--CCEEEEEECCCCCceEEEEECCCCC-EE---EeecCCCCccCeEEC
Confidence 778876543 1223334444567789997 444443 33344 46666665332 21 122233445677899
Q ss_pred CCCCCCceecccccCCCceeEEeecCC---cEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCC
Q 036510 159 PSTAPGALVGSGFLDPVQKLCSGGCDN---TVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDG 235 (288)
Q Consensus 159 p~~~~~~~~~~~~~~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~ 235 (288)
|++ +.++..+.++ .|.+||+.++.. +.+ ... .......|+|++ ++|+..+.++
T Consensus 331 pdg--------------~~i~~~~~~~~~~~i~~~d~~~~~~--~~l---~~~-~~~~~p~~spdg----~~l~~~~~~~ 386 (417)
T TIGR02800 331 PDG--------------DLIAFVHREGGGFNIAVMDLDGGGE--RVL---TDT-GLDESPSFAPNG----RMILYATTRG 386 (417)
T ss_pred CCC--------------CEEEEEEccCCceEEEEEeCCCCCe--EEc---cCC-CCCCCceECCCC----CEEEEEEeCC
Confidence 987 5565555554 677888766421 111 111 123455899984 5676766654
No 248
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.09 E-value=1.1e-07 Score=85.30 Aligned_cols=220 Identities=15% Similarity=0.130 Sum_probs=115.4
Q ss_pred cEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCE--EE-EeeCCCc--EEEeecCCCCceEEeEEeecCCCceeEE
Q 036510 34 SIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSI--LA-SCSFDGT--VIIWKEGNSNEWIKDHVFEDHKSSVNSI 108 (288)
Q Consensus 34 ~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~--l~-s~s~d~~--v~iwd~~~~~~~~~~~~~~~h~~~v~~l 108 (288)
.+.+.|.++.. .+.+.........-+|+|+ |+. ++ ....++. |.+.++..+.. ..+....+.....
T Consensus 166 ~l~~~d~dG~~---~~~lt~~~~~~~sP~wSPD--G~~~~~~y~S~~~g~~~I~~~~l~~g~~----~~lt~~~g~~~~p 236 (428)
T PRK01029 166 ELWSVDYDGQN---LRPLTQEHSLSITPTWMHI--GSGFPYLYVSYKLGVPKIFLGSLENPAG----KKILALQGNQLMP 236 (428)
T ss_pred eEEEEcCCCCC---ceEcccCCCCcccceEccC--CCceEEEEEEccCCCceEEEEECCCCCc----eEeecCCCCccce
Confidence 45555665432 2334445556677899976 543 32 3334444 55556654432 1222233445678
Q ss_pred EeccCCCCeEEE-EEeCCC----cEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeE-Eee
Q 036510 109 DWAPHELGLCLA-CGSSDG----NISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLC-SGG 182 (288)
Q Consensus 109 ~~~p~~~~~~l~-sg~~d~----~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~-s~~ 182 (288)
+|+||+ ..++ +...+| .+.+|++..+..-.................|+|++ +.|+ ++.
T Consensus 237 ~wSPDG--~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG--------------~~Laf~s~ 300 (428)
T PRK01029 237 TFSPRK--KLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDG--------------TRLVFVSN 300 (428)
T ss_pred EECCCC--CEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCC--------------CEEEEEEC
Confidence 999994 3344 333223 34446655421111112222222234578999997 4444 444
Q ss_pred cCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCC---CcEEEEEeecCCCcccceEeecccc
Q 036510 183 CDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASED---GKVIIWTVAREGDQWEGKVLHDFKT 259 (288)
Q Consensus 183 ~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D---~~i~iw~~~~~~~~~~~~~~~~~~~ 259 (288)
.++...||.+.-.... .....+..+...+....||||+ ++|+..+.+ ..|.+||+...+ ...+.....
T Consensus 301 ~~g~~~ly~~~~~~~g-~~~~~lt~~~~~~~~p~wSPDG----~~Laf~~~~~g~~~I~v~dl~~g~----~~~Lt~~~~ 371 (428)
T PRK01029 301 KDGRPRIYIMQIDPEG-QSPRLLTKKYRNSSCPAWSPDG----KKIAFCSVIKGVRQICVYDLATGR----DYQLTTSPE 371 (428)
T ss_pred CCCCceEEEEECcccc-cceEEeccCCCCccceeECCCC----CEEEEEEcCCCCcEEEEEECCCCC----eEEccCCCC
Confidence 5666666655321000 0112233334456788999985 567766543 368899886432 122222223
Q ss_pred CeEEEEeecCCCEEEEEeC---CCcEEEeEc
Q 036510 260 PVYRVSWSLTGNILAVADG---NNNVTLWEE 287 (288)
Q Consensus 260 ~i~~~~~spdg~~l~s~~~---d~~v~~w~~ 287 (288)
.+....|+|||+.|+..+. ...|.++++
T Consensus 372 ~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl 402 (428)
T PRK01029 372 NKESPSWAIDSLHLVYSAGNSNESELYLISL 402 (428)
T ss_pred CccceEECCCCCEEEEEECCCCCceEEEEEC
Confidence 4677999999998876543 245666663
No 249
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.08 E-value=3.2e-08 Score=87.39 Aligned_cols=188 Identities=15% Similarity=0.214 Sum_probs=131.2
Q ss_pred CCEEEEeeCCCcEEEeecCCCCceEEeEEee---cCCCceeEEEec------cC------------CCCeEEEEEeCCCc
Q 036510 69 GSILASCSFDGTVIIWKEGNSNEWIKDHVFE---DHKSSVNSIDWA------PH------------ELGLCLACGSSDGN 127 (288)
Q Consensus 69 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~---~h~~~v~~l~~~------p~------------~~~~~l~sg~~d~~ 127 (288)
..+||....||.+|||+...... ...+. .-.+...+..|. |. .....++-|...|.
T Consensus 5 ~~~~A~~~~~g~l~iw~t~~~~~---~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 5 LDYFALSTGDGRLRIWDTAKNQL---QQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred hheEeecCCCCeEEEEEccCcee---eeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 67999999999999999865431 11111 111223333332 21 11346778888999
Q ss_pred EEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeecccc
Q 036510 128 ISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQM 207 (288)
Q Consensus 128 i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 207 (288)
|-+|+...++ .........|...|.++.|+-+- .-|.|+++|..+..|+.... ..+.....
T Consensus 82 v~~ys~~~g~-it~~~st~~h~~~v~~~~~~~~~--------------~ciyS~~ad~~v~~~~~~~~----~~~~~~~~ 142 (541)
T KOG4547|consen 82 VLLYSVAGGE-ITAKLSTDKHYGNVNEILDAQRL--------------GCIYSVGADLKVVYILEKEK----VIIRIWKE 142 (541)
T ss_pred EEEEEecCCe-EEEEEecCCCCCcceeeeccccc--------------CceEecCCceeEEEEecccc----eeeeeecc
Confidence 9999987653 22222235688899999876554 45889999999999998765 33445566
Q ss_pred CCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecC-----CCEEEEE-eCCCc
Q 036510 208 HTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLT-----GNILAVA-DGNNN 281 (288)
Q Consensus 208 h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spd-----g~~l~s~-~~d~~ 281 (288)
....+.+++.+||+ .++++||. .|++||++.++ ....+.+|.++|..++|--+ |.+++++ ..+.-
T Consensus 143 ~~~~~~sl~is~D~----~~l~~as~--~ik~~~~~~ke---vv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~ 213 (541)
T KOG4547|consen 143 QKPLVSSLCISPDG----KILLTASR--QIKVLDIETKE---VVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERG 213 (541)
T ss_pred CCCccceEEEcCCC----CEEEeccc--eEEEEEccCce---EEEEecCCCcceEEEEEEEeccccccceeeeccccccc
Confidence 66778999999984 67888876 79999998642 23556788899999999988 7776655 45666
Q ss_pred EEEeEc
Q 036510 282 VTLWEE 287 (288)
Q Consensus 282 v~~w~~ 287 (288)
+.+|.+
T Consensus 214 i~~w~v 219 (541)
T KOG4547|consen 214 ITVWVV 219 (541)
T ss_pred eeEEEE
Confidence 778864
No 250
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.07 E-value=1.3e-09 Score=106.45 Aligned_cols=187 Identities=17% Similarity=0.298 Sum_probs=130.8
Q ss_pred ccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeec
Q 036510 55 KGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTAR 134 (288)
Q Consensus 55 ~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~ 134 (288)
-..|..+. +|+. ..+.+||+.||.|++|.-..+.....-++. + ...|+.+.|+-. |..+..+..||.|.+|...
T Consensus 2208 v~~v~r~~-sHp~-~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~-g-~s~vtr~~f~~q--Gnk~~i~d~dg~l~l~q~~ 2281 (2439)
T KOG1064|consen 2208 VENVRRMT-SHPS-DPYYLTGSQDGSVRMFEWGHGQQVVCFRTA-G-NSRVTRSRFNHQ--GNKFGIVDGDGDLSLWQAS 2281 (2439)
T ss_pred cCceeeec-CCCC-CceEEecCCCceEEEEeccCCCeEEEeecc-C-cchhhhhhhccc--CCceeeeccCCceeecccC
Confidence 34454444 3443 468899999999999988665532222222 2 378999999876 4456778889999999875
Q ss_pred CCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEE---eecCCcEEEEEEeCCceeeeeeeccccCCcc
Q 036510 135 ADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCS---GGCDNTVKVWKLYNGIWKMDCFPALQMHTDW 211 (288)
Q Consensus 135 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s---~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~ 211 (288)
. .++.-.+.|+.....+.|-. ..+++ .+.++++.+||..-.. ..-+++ ..|.+.
T Consensus 2282 p----k~~~s~qchnk~~~Df~Fi~----------------s~~~tag~s~d~~n~~lwDtl~~~-~~s~v~--~~H~~g 2338 (2439)
T KOG1064|consen 2282 P----KPYTSWQCHNKALSDFRFIG----------------SLLATAGRSSDNRNVCLWDTLLPP-MNSLVH--TCHDGG 2338 (2439)
T ss_pred C----cceeccccCCccccceeeee----------------hhhhccccCCCCCcccchhcccCc-ccceee--eecCCC
Confidence 2 22334456877777776643 22333 3557789999975432 123444 789999
Q ss_pred eEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510 212 VRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 212 V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~ 287 (288)
++++.+.|. .++|.||+.+|.|++||++.. ++.|.+.. +. ...+|++|++.|.++||++
T Consensus 2339 aT~l~~~P~----~qllisggr~G~v~l~D~rqr------ql~h~~~~------~~-~~~~f~~~ss~g~ikIw~~ 2397 (2439)
T KOG1064|consen 2339 ATVLAYAPK----HQLLISGGRKGEVCLFDIRQR------QLRHTFQA------LD-TREYFVTGSSEGNIKIWRL 2397 (2439)
T ss_pred ceEEEEcCc----ceEEEecCCcCcEEEeehHHH------HHHHHhhh------hh-hhheeeccCcccceEEEEc
Confidence 999999997 478999999999999999854 23343333 33 5678999999999999984
No 251
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.07 E-value=3.6e-07 Score=80.21 Aligned_cols=238 Identities=13% Similarity=0.095 Sum_probs=122.7
Q ss_pred EEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEE-eeCCCcEEEeecCCCCceE
Q 036510 15 HDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILAS-CSFDGTVIIWKEGNSNEWI 93 (288)
Q Consensus 15 ~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s-~s~d~~v~iwd~~~~~~~~ 93 (288)
..+.|+|||+++..++.|+.|.++|+... +.+.++..-.. ..+++++++ |++++. .-..+.+.++|.++.+
T Consensus 40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~--~~v~~i~~G~~-~~~i~~s~D--G~~~~v~n~~~~~v~v~D~~tle--- 111 (369)
T PF02239_consen 40 AGLKFSPDGRYLYVANRDGTVSVIDLATG--KVVATIKVGGN-PRGIAVSPD--GKYVYVANYEPGTVSVIDAETLE--- 111 (369)
T ss_dssp EEEE-TT-SSEEEEEETTSEEEEEETTSS--SEEEEEE-SSE-EEEEEE--T--TTEEEEEEEETTEEEEEETTT-----
T ss_pred eEEEecCCCCEEEEEcCCCeEEEEECCcc--cEEEEEecCCC-cceEEEcCC--CCEEEEEecCCCceeEecccccc---
Confidence 34679999999999999999999998543 56666665343 477999865 777764 4579999999987654
Q ss_pred EeEEeec-------CCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCce
Q 036510 94 KDHVFED-------HKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGAL 166 (288)
Q Consensus 94 ~~~~~~~-------h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~ 166 (288)
..+.++. ....+.++-.+|.. ...+++--..+.|.+-|......... ... ..........|+|+++.
T Consensus 112 ~v~~I~~~~~~~~~~~~Rv~aIv~s~~~-~~fVv~lkd~~~I~vVdy~d~~~~~~-~~i-~~g~~~~D~~~dpdgry--- 185 (369)
T PF02239_consen 112 PVKTIPTGGMPVDGPESRVAAIVASPGR-PEFVVNLKDTGEIWVVDYSDPKNLKV-TTI-KVGRFPHDGGFDPDGRY--- 185 (369)
T ss_dssp EEEEEE--EE-TTTS---EEEEEE-SSS-SEEEEEETTTTEEEEEETTTSSCEEE-EEE-E--TTEEEEEE-TTSSE---
T ss_pred ceeecccccccccccCCCceeEEecCCC-CEEEEEEccCCeEEEEEeccccccce-eee-cccccccccccCcccce---
Confidence 2333322 22356667666653 33444444446776667654432211 111 12234556777777631
Q ss_pred ecccccCCCceeEEeecCCcEEEEEEeCCc--------------------------------------------------
Q 036510 167 VGSGFLDPVQKLCSGGCDNTVKVWKLYNGI-------------------------------------------------- 196 (288)
Q Consensus 167 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-------------------------------------------------- 196 (288)
+++.....+.|-++|..++.
T Consensus 186 ----------~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d 255 (369)
T PF02239_consen 186 ----------FLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHD 255 (369)
T ss_dssp ----------EEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-ST
T ss_pred ----------eeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccch
Confidence 11111222222222221110
Q ss_pred -eeeeeeeccccCCcceEEEEecCCCCCCCcEEEEE----eCCCcEEEEEeecCCCcccceEeecc----ccCeEEEEee
Q 036510 197 -WKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASA----SEDGKVIIWTVAREGDQWEGKVLHDF----KTPVYRVSWS 267 (288)
Q Consensus 197 -~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~----s~D~~i~iw~~~~~~~~~~~~~~~~~----~~~i~~~~~s 267 (288)
...+.+..+...... .-+.-+|++ .++... ...++|.++|.+.. +..+.. ..++.-+.|+
T Consensus 256 ~~~wkvv~~I~~~G~g-lFi~thP~s----~~vwvd~~~~~~~~~v~viD~~tl------~~~~~i~~~~~~~~~h~ef~ 324 (369)
T PF02239_consen 256 DYAWKVVKTIPTQGGG-LFIKTHPDS----RYVWVDTFLNPDADTVQVIDKKTL------KVVKTITPGPGKRVVHMEFN 324 (369)
T ss_dssp TTBTSEEEEEE-SSSS---EE--TT-----SEEEEE-TT-SSHT-EEEEECCGT------EEEE-HHHHHT--EEEEEE-
T ss_pred hhcCeEEEEEECCCCc-ceeecCCCC----ccEEeeccCCCCCceEEEEECcCc------ceeEEEeccCCCcEeccEEC
Confidence 001122222222223 445667774 345555 45678999998753 222222 2358899999
Q ss_pred cCCCEEEEEeC--CCcEEEeEc
Q 036510 268 LTGNILAVADG--NNNVTLWEE 287 (288)
Q Consensus 268 pdg~~l~s~~~--d~~v~~w~~ 287 (288)
+||+++..+.- ++.|.++|.
T Consensus 325 ~dG~~v~vS~~~~~~~i~v~D~ 346 (369)
T PF02239_consen 325 PDGKEVWVSVWDGNGAIVVYDA 346 (369)
T ss_dssp TTSSEEEEEEE--TTEEEEEET
T ss_pred CCCCEEEEEEecCCCEEEEEEC
Confidence 99998776654 346999984
No 252
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.07 E-value=3.1e-06 Score=71.17 Aligned_cols=256 Identities=13% Similarity=0.195 Sum_probs=154.0
Q ss_pred ccccceEEEEEcCCCCEEEEeeCC---CcEEEEEeCCCCcee--eEEEeccccCeEEEEecCCCCCCEEEEee-CCCcEE
Q 036510 9 GHEDTVHDVAMDYYGKRLATASSD---YSIKIIGVGNNTSQH--LAKLSGHKGAVWEVAWAHPKFGSILASCS-FDGTVI 82 (288)
Q Consensus 9 ~h~~~v~~~~~s~~g~~l~s~~~d---~~i~lwd~~~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~d~~v~ 82 (288)
.+.+..+=++|+|++++|.++..+ +.|.-|.++...++. +........+-+.++.+++ +++++++. .-|.|.
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~--g~~vf~AnY~~g~v~ 114 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDED--GRFVFVANYHSGSVS 114 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCC--CCEEEEEEccCceEE
Confidence 445566778999999999888765 778888886533322 2221111223367888754 78887776 368899
Q ss_pred EeecCCCCceEEeEEeecCCCc----------eeEEEeccCCCCeEEEEE--eCCCcEEEEeecCCCCeeeEEeec-cCC
Q 036510 83 IWKEGNSNEWIKDHVFEDHKSS----------VNSIDWAPHELGLCLACG--SSDGNISVFTARADGGWDTSRIDQ-AHP 149 (288)
Q Consensus 83 iwd~~~~~~~~~~~~~~~h~~~----------v~~l~~~p~~~~~~l~sg--~~d~~i~i~d~~~~~~~~~~~~~~-~~~ 149 (288)
++-+...+..........|.+. +-+..+.|+ ++++++. +.| .|.+|++..+ .+....... .-.
T Consensus 115 v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~--~~~l~v~DLG~D-ri~~y~~~dg-~L~~~~~~~v~~G 190 (346)
T COG2706 115 VYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPD--GRYLVVPDLGTD-RIFLYDLDDG-KLTPADPAEVKPG 190 (346)
T ss_pred EEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCC--CCEEEEeecCCc-eEEEEEcccC-ccccccccccCCC
Confidence 9877542221111122234444 778889998 5555555 444 5889998843 332221111 123
Q ss_pred CCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccc----c--CCcceEEEEecCCCCC
Q 036510 150 VGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQ----M--HTDWVRDVAWAPNLGL 223 (288)
Q Consensus 150 ~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~----~--h~~~V~~v~~sp~~~~ 223 (288)
.+-+-|.|.|++. -.-+...-+++|-+|.......+++.++.+. . ...+.-+|..+|++
T Consensus 191 ~GPRHi~FHpn~k-------------~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dG-- 255 (346)
T COG2706 191 AGPRHIVFHPNGK-------------YAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDG-- 255 (346)
T ss_pred CCcceEEEcCCCc-------------EEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCC--
Confidence 4567899999873 1123556688999999877433344444321 1 23357788999984
Q ss_pred CCcEEEEEeC-CCcEEEEEeecCCCcccceEee-ccccCeEEEEeecCCCEEEEEeCC-CcEEEeEc
Q 036510 224 PKSTIASASE-DGKVIIWTVAREGDQWEGKVLH-DFKTPVYRVSWSLTGNILAVADGN-NNVTLWEE 287 (288)
Q Consensus 224 ~~~~l~s~s~-D~~i~iw~~~~~~~~~~~~~~~-~~~~~i~~~~~spdg~~l~s~~~d-~~v~~w~~ 287 (288)
++|-+... ...|-+|.+.......+..... .+........|+|+|++|+++..| .+|.++.+
T Consensus 256 --rFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~ 320 (346)
T COG2706 256 --RFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFER 320 (346)
T ss_pred --CEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEE
Confidence 45544443 4478888887553321111111 222346789999999999988764 46888763
No 253
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.06 E-value=9.3e-09 Score=90.55 Aligned_cols=190 Identities=18% Similarity=0.314 Sum_probs=125.8
Q ss_pred CEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEe---EEeec
Q 036510 24 KRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKD---HVFED 100 (288)
Q Consensus 24 ~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~---~~~~~ 100 (288)
.+++.|+.. .|.=.++ ..++.+..+.--.+.++.+..++- ..+|++|+.+|.|..||.++......+ ..+..
T Consensus 147 Dly~~gsg~-evYRlNL--EqGrfL~P~~~~~~~lN~v~in~~--hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s 221 (703)
T KOG2321|consen 147 DLYLVGSGS-EVYRLNL--EQGRFLNPFETDSGELNVVSINEE--HGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNS 221 (703)
T ss_pred cEEEeecCc-ceEEEEc--cccccccccccccccceeeeecCc--cceEEecccCceEEEecchhhhhheeeecccccCC
Confidence 444444444 3333344 334556666666688999988643 578999999999999999764321111 11122
Q ss_pred CCC-----ceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCC
Q 036510 101 HKS-----SVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPV 175 (288)
Q Consensus 101 h~~-----~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~ 175 (288)
|.+ .|++++|+-+ +..+++|..+|.+.|||+|....+ ....+....+|..+.|.+.+. .
T Consensus 222 ~pg~~~~~svTal~F~d~--gL~~aVGts~G~v~iyDLRa~~pl--~~kdh~~e~pi~~l~~~~~~~------------q 285 (703)
T KOG2321|consen 222 HPGGDAAPSVTALKFRDD--GLHVAVGTSTGSVLIYDLRASKPL--LVKDHGYELPIKKLDWQDTDQ------------Q 285 (703)
T ss_pred CccccccCcceEEEecCC--ceeEEeeccCCcEEEEEcccCCce--eecccCCccceeeecccccCC------------C
Confidence 333 3999999865 788999999999999999976432 222233456788999987642 1
Q ss_pred ceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeec
Q 036510 176 QKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAR 244 (288)
Q Consensus 176 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~ 244 (288)
..++|. ....++|||..+|. ....+. ....++.+++-|+. .++.+|..+..+..|-+-.
T Consensus 286 ~~v~S~-Dk~~~kiWd~~~Gk----~~asiE-pt~~lND~C~~p~s----Gm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 286 NKVVSM-DKRILKIWDECTGK----PMASIE-PTSDLNDFCFVPGS----GMFFTANESSKMHTYYIPS 344 (703)
T ss_pred ceEEec-chHHhhhcccccCC----ceeecc-ccCCcCceeeecCC----ceEEEecCCCcceeEEccc
Confidence 345544 34569999998873 222222 23348999999985 5899999999888876643
No 254
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.06 E-value=5.7e-09 Score=86.64 Aligned_cols=128 Identities=22% Similarity=0.324 Sum_probs=96.5
Q ss_pred CCCCccccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCC--------------------------------------
Q 036510 1 MPPQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGN-------------------------------------- 42 (288)
Q Consensus 1 ~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~-------------------------------------- 42 (288)
|.+.+....|...|..+-|+....++++.+.|+.+.-.-...
T Consensus 104 m~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~ 183 (404)
T KOG1409|consen 104 MTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLE 183 (404)
T ss_pred cchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEe
Confidence 445556678999999999998888999999887654311100
Q ss_pred -CCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEE
Q 036510 43 -NTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLAC 121 (288)
Q Consensus 43 -~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~s 121 (288)
..-..+.++.+|.+.+++++|.+. ..+|.||..|..+.+||+.-.. . ....+.+|.+.|..+..-+. .+++.+
T Consensus 184 ~~~~~~i~~~~~h~~~~~~l~Wd~~--~~~LfSg~~d~~vi~wdigg~~-g-~~~el~gh~~kV~~l~~~~~--t~~l~S 257 (404)
T KOG1409|consen 184 QNGCQLITTFNGHTGEVTCLKWDPG--QRLLFSGASDHSVIMWDIGGRK-G-TAYELQGHNDKVQALSYAQH--TRQLIS 257 (404)
T ss_pred ecCCceEEEEcCcccceEEEEEcCC--CcEEEeccccCceEEEeccCCc-c-eeeeeccchhhhhhhhhhhh--heeeee
Confidence 000235667799999999999753 5789999999999999986432 2 33456789999999876655 567899
Q ss_pred EeCCCcEEEEeec
Q 036510 122 GSSDGNISVFTAR 134 (288)
Q Consensus 122 g~~d~~i~i~d~~ 134 (288)
++.||.|.+|+..
T Consensus 258 ~~edg~i~~w~mn 270 (404)
T KOG1409|consen 258 CGEDGGIVVWNMN 270 (404)
T ss_pred ccCCCeEEEEecc
Confidence 9999999999985
No 255
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.05 E-value=2.9e-07 Score=82.93 Aligned_cols=205 Identities=14% Similarity=0.169 Sum_probs=116.3
Q ss_pred cEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCC---CcEEEeecCCCCceEEeEEeecCCCceeEEEe
Q 036510 34 SIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFD---GTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDW 110 (288)
Q Consensus 34 ~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d---~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~ 110 (288)
.+.++|.++. ....+..+...+....|+++ |+.|+..+.+ ..|.+|++.++.. ..+....+.+...+|
T Consensus 180 ~l~~~d~~g~---~~~~l~~~~~~~~~p~wSpD--G~~la~~s~~~~~~~l~~~~l~~g~~----~~l~~~~g~~~~~~~ 250 (430)
T PRK00178 180 TLQRSDYDGA---RAVTLLQSREPILSPRWSPD--GKRIAYVSFEQKRPRIFVQNLDTGRR----EQITNFEGLNGAPAW 250 (430)
T ss_pred EEEEECCCCC---CceEEecCCCceeeeeECCC--CCEEEEEEcCCCCCEEEEEECCCCCE----EEccCCCCCcCCeEE
Confidence 3556666533 24455667778899999975 7888776643 3688888876542 123223344567899
Q ss_pred ccCCCCeEEEEEeCCC--cEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCC--c
Q 036510 111 APHELGLCLACGSSDG--NISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDN--T 186 (288)
Q Consensus 111 ~p~~~~~~l~sg~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~--~ 186 (288)
+|++ ..++.+...++ .|++||+..+.. .....+........|+|++. .++.++..++ .
T Consensus 251 SpDG-~~la~~~~~~g~~~Iy~~d~~~~~~----~~lt~~~~~~~~~~~spDg~-------------~i~f~s~~~g~~~ 312 (430)
T PRK00178 251 SPDG-SKLAFVLSKDGNPEIYVMDLASRQL----SRVTNHPAIDTEPFWGKDGR-------------TLYFTSDRGGKPQ 312 (430)
T ss_pred CCCC-CEEEEEEccCCCceEEEEECCCCCe----EEcccCCCCcCCeEECCCCC-------------EEEEEECCCCCce
Confidence 9984 23333455555 577778765432 11222333455678999872 2333443333 4
Q ss_pred EEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeC-CC--cEEEEEeecCCCcccceEeeccccCeEE
Q 036510 187 VKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASE-DG--KVIIWTVAREGDQWEGKVLHDFKTPVYR 263 (288)
Q Consensus 187 i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~-D~--~i~iw~~~~~~~~~~~~~~~~~~~~i~~ 263 (288)
|.++|+.++.. +.+ ...+ .......|+|++ ++|+..+. ++ .|.+||+.... ...+... .....
T Consensus 313 iy~~d~~~g~~--~~l-t~~~--~~~~~~~~Spdg----~~i~~~~~~~~~~~l~~~dl~tg~----~~~lt~~-~~~~~ 378 (430)
T PRK00178 313 IYKVNVNGGRA--ERV-TFVG--NYNARPRLSADG----KTLVMVHRQDGNFHVAAQDLQRGS----VRILTDT-SLDES 378 (430)
T ss_pred EEEEECCCCCE--EEe-ecCC--CCccceEECCCC----CEEEEEEccCCceEEEEEECCCCC----EEEccCC-CCCCC
Confidence 66666655431 111 1122 223456899985 56666654 33 47777765431 1222221 12235
Q ss_pred EEeecCCCEEEEEeCC
Q 036510 264 VSWSLTGNILAVADGN 279 (288)
Q Consensus 264 ~~~spdg~~l~s~~~d 279 (288)
..|+|||+.++..+.+
T Consensus 379 p~~spdg~~i~~~~~~ 394 (430)
T PRK00178 379 PSVAPNGTMLIYATRQ 394 (430)
T ss_pred ceECCCCCEEEEEEec
Confidence 6899999998887654
No 256
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.05 E-value=3.1e-07 Score=82.99 Aligned_cols=207 Identities=15% Similarity=0.109 Sum_probs=111.3
Q ss_pred cEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeC-CC--cEEEeecCCCCceEEeEEeecCCCceeEEEe
Q 036510 34 SIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSF-DG--TVIIWKEGNSNEWIKDHVFEDHKSSVNSIDW 110 (288)
Q Consensus 34 ~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-d~--~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~ 110 (288)
.+.++|.++.. .+.+..+...+....|+|+ |+.|+..+. ++ .|.+||+..+.. ..+....+......|
T Consensus 199 ~l~i~d~dG~~---~~~l~~~~~~~~~p~wSPD--G~~La~~s~~~g~~~L~~~dl~tg~~----~~lt~~~g~~~~~~w 269 (448)
T PRK04792 199 QLMIADYDGYN---EQMLLRSPEPLMSPAWSPD--GRKLAYVSFENRKAEIFVQDIYTQVR----EKVTSFPGINGAPRF 269 (448)
T ss_pred EEEEEeCCCCC---ceEeecCCCcccCceECCC--CCEEEEEEecCCCcEEEEEECCCCCe----EEecCCCCCcCCeeE
Confidence 55666765432 2345556778888999875 787876654 33 577778765432 112222333457899
Q ss_pred ccCCCCeEEEEEeCCCc--EEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCc--
Q 036510 111 APHELGLCLACGSSDGN--ISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNT-- 186 (288)
Q Consensus 111 ~p~~~~~~l~sg~~d~~--i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~-- 186 (288)
+|++ ..++.+.+.++. |+++|+..+. . .....+........|+|++. .++.++..++.
T Consensus 270 SPDG-~~La~~~~~~g~~~Iy~~dl~tg~-~---~~lt~~~~~~~~p~wSpDG~-------------~I~f~s~~~g~~~ 331 (448)
T PRK04792 270 SPDG-KKLALVLSKDGQPEIYVVDIATKA-L---TRITRHRAIDTEPSWHPDGK-------------SLIFTSERGGKPQ 331 (448)
T ss_pred CCCC-CEEEEEEeCCCCeEEEEEECCCCC-e---EECccCCCCccceEECCCCC-------------EEEEEECCCCCce
Confidence 9985 234445566675 6666665432 1 22223333456788999872 23334433444
Q ss_pred EEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeC-CCcEEEEEeecCCCcccceEeeccccCeEEEE
Q 036510 187 VKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASE-DGKVIIWTVAREGDQWEGKVLHDFKTPVYRVS 265 (288)
Q Consensus 187 i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~-D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~ 265 (288)
|.++|+.++.. +.+ +..++ ......|+|++ ++|+..+. ++..+||-+...... ...+... .......
T Consensus 332 Iy~~dl~~g~~--~~L-t~~g~--~~~~~~~SpDG----~~l~~~~~~~g~~~I~~~dl~~g~--~~~lt~~-~~d~~ps 399 (448)
T PRK04792 332 IYRVNLASGKV--SRL-TFEGE--QNLGGSITPDG----RSMIMVNRTNGKFNIARQDLETGA--MQVLTST-RLDESPS 399 (448)
T ss_pred EEEEECCCCCE--EEE-ecCCC--CCcCeeECCCC----CEEEEEEecCCceEEEEEECCCCC--eEEccCC-CCCCCce
Confidence 55556555431 111 12222 23456899985 45655554 454555543322111 1222221 1223458
Q ss_pred eecCCCEEEEEeCC
Q 036510 266 WSLTGNILAVADGN 279 (288)
Q Consensus 266 ~spdg~~l~s~~~d 279 (288)
|+|||+.|+..+.+
T Consensus 400 ~spdG~~I~~~~~~ 413 (448)
T PRK04792 400 VAPNGTMVIYSTTY 413 (448)
T ss_pred ECCCCCEEEEEEec
Confidence 99999998877654
No 257
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.04 E-value=1.5e-07 Score=84.73 Aligned_cols=222 Identities=17% Similarity=0.151 Sum_probs=119.3
Q ss_pred cccccceEEEEEcCCCCEEEEeeCC---CcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEE-EeeCCC--cE
Q 036510 8 TGHEDTVHDVAMDYYGKRLATASSD---YSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILA-SCSFDG--TV 81 (288)
Q Consensus 8 ~~h~~~v~~~~~s~~g~~l~s~~~d---~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~s~d~--~v 81 (288)
..+...+...+|+|||++|+..+.+ ..+.+|++..+..+.+.. ..+.+...+|+++ |+.|+ +.+.++ .|
T Consensus 195 ~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~---~~g~~~~~~~SpD--G~~la~~~~~~g~~~I 269 (430)
T PRK00178 195 LQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITN---FEGLNGAPAWSPD--GSKLAFVLSKDGNPEI 269 (430)
T ss_pred ecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccC---CCCCcCCeEECCC--CCEEEEEEccCCCceE
Confidence 3556678888999999998876654 357778886543333322 2333456889875 67665 555555 56
Q ss_pred EEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCC--cEEEEeecCCCCeeeEEeeccCCCCeeEEEeCC
Q 036510 82 IIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDG--NISVFTARADGGWDTSRIDQAHPVGVTSVSWAP 159 (288)
Q Consensus 82 ~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p 159 (288)
.++|+.++. ...+..+........|+|++ ..++.+...++ .|.++++..+. ..... ..+ .......|+|
T Consensus 270 y~~d~~~~~----~~~lt~~~~~~~~~~~spDg-~~i~f~s~~~g~~~iy~~d~~~g~-~~~lt-~~~--~~~~~~~~Sp 340 (430)
T PRK00178 270 YVMDLASRQ----LSRVTNHPAIDTEPFWGKDG-RTLYFTSDRGGKPQIYKVNVNGGR-AERVT-FVG--NYNARPRLSA 340 (430)
T ss_pred EEEECCCCC----eEEcccCCCCcCCeEECCCC-CEEEEEECCCCCceEEEEECCCCC-EEEee-cCC--CCccceEECC
Confidence 777876543 12344455556678899984 23333443444 45555654432 22111 111 1233567888
Q ss_pred CCCCCceecccccCCCceeEEee-cCC--cEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeC-CC
Q 036510 160 STAPGALVGSGFLDPVQKLCSGG-CDN--TVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASE-DG 235 (288)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~l~s~~-~d~--~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~-D~ 235 (288)
++ +.++..+ .++ .|.++|+.++.. +.+.. ........|+|++ ++|+..+. ++
T Consensus 341 dg--------------~~i~~~~~~~~~~~l~~~dl~tg~~--~~lt~----~~~~~~p~~spdg----~~i~~~~~~~g 396 (430)
T PRK00178 341 DG--------------KTLVMVHRQDGNFHVAAQDLQRGSV--RILTD----TSLDESPSVAPNG----TMLIYATRQQG 396 (430)
T ss_pred CC--------------CEEEEEEccCCceEEEEEECCCCCE--EEccC----CCCCCCceECCCC----CEEEEEEecCC
Confidence 87 3444333 233 477788876531 22211 1122345899985 55665554 34
Q ss_pred cEEEEEeecCCCcccceEeeccccCeEEEEeecC
Q 036510 236 KVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLT 269 (288)
Q Consensus 236 ~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spd 269 (288)
.-++|-+...+.. ...+....+.+...+|+|-
T Consensus 397 ~~~l~~~~~~g~~--~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 397 RGVLMLVSINGRV--RLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred ceEEEEEECCCCc--eEECcCCCCCcCCCccCCC
Confidence 4334433322211 1222223345666777763
No 258
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.04 E-value=2.1e-07 Score=82.40 Aligned_cols=199 Identities=18% Similarity=0.216 Sum_probs=134.0
Q ss_pred CCCCEEEEeeCCCcEEEEEeCCCCcee-eEEEeccccCeEEEEec------C------------CCCCCEEEEeeCCCcE
Q 036510 21 YYGKRLATASSDYSIKIIGVGNNTSQH-LAKLSGHKGAVWEVAWA------H------------PKFGSILASCSFDGTV 81 (288)
Q Consensus 21 ~~g~~l~s~~~d~~i~lwd~~~~~~~~-~~~~~~h~~~v~~~~~~------~------------~~~~~~l~s~s~d~~v 81 (288)
|.+.|+|....||.+|+|+........ +.....-.+...++.|. + ..+-..++-|-..|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 456889999999999999985432111 11111111222233331 0 0012466778889999
Q ss_pred EEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCC
Q 036510 82 IIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPST 161 (288)
Q Consensus 82 ~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~ 161 (288)
-+++...+. .....+-..|.+.|+++.++-+ ...+.+++.|.++..|+.+.... ...-++-+..+.++..+|++
T Consensus 83 ~~ys~~~g~-it~~~st~~h~~~v~~~~~~~~--~~ciyS~~ad~~v~~~~~~~~~~---~~~~~~~~~~~~sl~is~D~ 156 (541)
T KOG4547|consen 83 LLYSVAGGE-ITAKLSTDKHYGNVNEILDAQR--LGCIYSVGADLKVVYILEKEKVI---IRIWKEQKPLVSSLCISPDG 156 (541)
T ss_pred EEEEecCCe-EEEEEecCCCCCcceeeecccc--cCceEecCCceeEEEEeccccee---eeeeccCCCccceEEEcCCC
Confidence 999886544 1111122468999999988754 56789999999999999876533 23334556668888889986
Q ss_pred CCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCC-CCCCCcEEEEE-eCCCcEEE
Q 036510 162 APGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPN-LGLPKSTIASA-SEDGKVII 239 (288)
Q Consensus 162 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~-~~~~~~~l~s~-s~D~~i~i 239 (288)
..+++++ +.|++||++++ +.+..+.||.++|++++|-.+ .+..+.+|++. ..+.-|.+
T Consensus 157 --------------~~l~~as--~~ik~~~~~~k----evv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~ 216 (541)
T KOG4547|consen 157 --------------KILLTAS--RQIKVLDIETK----EVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITV 216 (541)
T ss_pred --------------CEEEecc--ceEEEEEccCc----eEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeE
Confidence 5677765 78999999987 678889999999999999876 22224455554 45778889
Q ss_pred EEeecC
Q 036510 240 WTVARE 245 (288)
Q Consensus 240 w~~~~~ 245 (288)
|-+...
T Consensus 217 w~v~~~ 222 (541)
T KOG4547|consen 217 WVVEKE 222 (541)
T ss_pred EEEEcc
Confidence 988753
No 259
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.03 E-value=1.7e-07 Score=75.63 Aligned_cols=239 Identities=10% Similarity=0.013 Sum_probs=144.7
Q ss_pred EEEEcCC-----CCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCC
Q 036510 16 DVAMDYY-----GKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSN 90 (288)
Q Consensus 16 ~~~~s~~-----g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~ 90 (288)
++.|.|. --+|+.||.-|...+|...... .+.+.-.-|.-.|.-+.-.-+ ...-+..++.|.++++.++....
T Consensus 72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~-~h~~~cd~snn~v~~~~r~cd-~~~~~~i~sndht~k~~~~~~~s 149 (344)
T KOG4532|consen 72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTND-GHLYQCDVSNNDVTLVKRYCD-LKFPLNIASNDHTGKTMVVSGDS 149 (344)
T ss_pred cccccchHhhccccEEEeccccceeeeecccCcc-cceeeecccccchhhhhhhcc-cccceeeccCCcceeEEEEecCc
Confidence 3556653 2478999999999999875332 233333444433322111111 12346778999999999886432
Q ss_pred ceEEeEEeecCCC--ceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceec
Q 036510 91 EWIKDHVFEDHKS--SVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVG 168 (288)
Q Consensus 91 ~~~~~~~~~~h~~--~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~ 168 (288)
. . ...|.. ..+++.++++ +..+++.+....|..|.+................+.-.+.+|+...
T Consensus 150 ~---~--~~~h~~~~~~ns~~~snd--~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~------- 215 (344)
T KOG4532|consen 150 N---K--FAVHNQNLTQNSLHYSND--PSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEND------- 215 (344)
T ss_pred c---c--ceeeccccceeeeEEcCC--CceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCc-------
Confidence 1 1 112333 3788999988 5677888888999999997655433322233334455667777665
Q ss_pred ccccCCCceeEEeecCCcEEEEEEeCCce-eeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCC
Q 036510 169 SGFLDPVQKLCSGGCDNTVKVWKLYNGIW-KMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGD 247 (288)
Q Consensus 169 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~ 247 (288)
..++++..|+++.|||++.-.. +.+.-.+-..|.+.++.+.|+|.+.+ .+|.-.-.-+.+.+-|.+....
T Consensus 216 -------~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~l--DLLf~sEhfs~~hv~D~R~~~~ 286 (344)
T KOG4532|consen 216 -------LQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLL--DLLFISEHFSRVHVVDTRNYVN 286 (344)
T ss_pred -------ceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcc--eEEEEecCcceEEEEEcccCce
Confidence 5799999999999999986311 11212223458889999999985322 2333333355788888876432
Q ss_pred cccceE----eeccc-cCeEEEEeecCCCEEEEEeCC
Q 036510 248 QWEGKV----LHDFK-TPVYRVSWSLTGNILAVADGN 279 (288)
Q Consensus 248 ~~~~~~----~~~~~-~~i~~~~~spdg~~l~s~~~d 279 (288)
.....+ ...+. ..|....|+.++..+-+..++
T Consensus 287 ~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~ 323 (344)
T KOG4532|consen 287 HQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL 323 (344)
T ss_pred eeEEecCccccccccccccccccccCCCcccccccch
Confidence 211111 01122 247888898888777666553
No 260
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.03 E-value=4.6e-06 Score=72.89 Aligned_cols=210 Identities=13% Similarity=0.178 Sum_probs=125.4
Q ss_pred EEEEEcCCCCEEEEeeC-CCcEEEEEeCCCCceeeEE--Eecc-----------ccCeEEEEecCCCCCCEEEEe-eCCC
Q 036510 15 HDVAMDYYGKRLATASS-DYSIKIIGVGNNTSQHLAK--LSGH-----------KGAVWEVAWAHPKFGSILASC-SFDG 79 (288)
Q Consensus 15 ~~~~~s~~g~~l~s~~~-d~~i~lwd~~~~~~~~~~~--~~~h-----------~~~v~~~~~~~~~~~~~l~s~-s~d~ 79 (288)
..++++|++++|+++.+ ++++.+++++.. +..... +..| ..-..++.|+|+ +++++.. -...
T Consensus 90 ~~i~~~~~g~~l~vany~~g~v~v~~l~~~-g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pd--g~~v~v~dlG~D 166 (345)
T PF10282_consen 90 CHIAVDPDGRFLYVANYGGGSVSVFPLDDD-GSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPD--GRFVYVPDLGAD 166 (345)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEECTT-SEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TT--SSEEEEEETTTT
T ss_pred EEEEEecCCCEEEEEEccCCeEEEEEccCC-cccceeeeecccCCCCCcccccccccceeEEECCC--CCEEEEEecCCC
Confidence 45889999999999886 899999999642 222111 1111 123577888865 6655544 3456
Q ss_pred cEEEeecCCCC-ceEEeEEee-cCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecC-CCCeeeEEeec----cCC--C
Q 036510 80 TVIIWKEGNSN-EWIKDHVFE-DHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARA-DGGWDTSRIDQ----AHP--V 150 (288)
Q Consensus 80 ~v~iwd~~~~~-~~~~~~~~~-~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~-~~~~~~~~~~~----~~~--~ 150 (288)
.|.+|++.... .......+. .....-..+.|+|++ ..+.+....++.|.+|++.. .+.+....... ... .
T Consensus 167 ~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg-~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~ 245 (345)
T PF10282_consen 167 RVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDG-KYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGEN 245 (345)
T ss_dssp EEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTS-SEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSS
T ss_pred EEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCc-CEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccC
Confidence 88899886543 222222232 223346789999985 45667778899999999883 22222222111 111 2
Q ss_pred CeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEE
Q 036510 151 GVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIAS 230 (288)
Q Consensus 151 ~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s 230 (288)
....|.++|++. .+.++.-..++|.++++....-.++.+..+......-+.+.++|++ ++|+.
T Consensus 246 ~~~~i~ispdg~-------------~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g----~~l~V 308 (345)
T PF10282_consen 246 APAEIAISPDGR-------------FLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDG----RYLYV 308 (345)
T ss_dssp SEEEEEE-TTSS-------------EEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTS----SEEEE
T ss_pred CceeEEEecCCC-------------EEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCC----CEEEE
Confidence 466788888872 3455566678899999943211233333333223334889999985 56666
Q ss_pred Ee-CCCcEEEEEeecC
Q 036510 231 AS-EDGKVIIWTVARE 245 (288)
Q Consensus 231 ~s-~D~~i~iw~~~~~ 245 (288)
++ .++.|.+|++...
T Consensus 309 a~~~s~~v~vf~~d~~ 324 (345)
T PF10282_consen 309 ANQDSNTVSVFDIDPD 324 (345)
T ss_dssp EETTTTEEEEEEEETT
T ss_pred EecCCCeEEEEEEeCC
Confidence 65 5779999998744
No 261
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.02 E-value=1.5e-09 Score=98.04 Aligned_cols=225 Identities=18% Similarity=0.237 Sum_probs=149.4
Q ss_pred cccccccceEEEEEcCCC-CEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEe
Q 036510 6 IETGHEDTVHDVAMDYYG-KRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIW 84 (288)
Q Consensus 6 ~~~~h~~~v~~~~~s~~g-~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iw 84 (288)
.+-||..+|+.+.|.|.. ..|++++.|..+.+||...+. ..+.....-......++|+. .++..+|+ +..+.|.+|
T Consensus 109 ~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~-~p~ys~~~w~s~asqVkwny-k~p~vlas-shg~~i~vw 185 (1081)
T KOG0309|consen 109 VLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH-RPFYSTSSWRSAASQVKWNY-KDPNVLAS-SHGNDIFVW 185 (1081)
T ss_pred EEecCccceeccccCCCCCcceeeccccccceeeeccCCC-cceeeeecccccCceeeecc-cCcchhhh-ccCCceEEE
Confidence 355899999999999864 679999999999999987554 45666655555668899975 34666665 777899999
Q ss_pred ecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCC
Q 036510 85 KEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPG 164 (288)
Q Consensus 85 d~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~ 164 (288)
|.+.+.+ ....+++|...|+.++|+.-- -..+.+.+.|++++.||........ ......+.+|..-.+-|.+..
T Consensus 186 d~r~gs~--pl~s~K~~vs~vn~~~fnr~~-~s~~~s~~~d~tvkfw~y~kSt~e~--~~~vtt~~piw~~r~~Pfg~g- 259 (1081)
T KOG0309|consen 186 DLRKGST--PLCSLKGHVSSVNSIDFNRFK-YSEIMSSSNDGTVKFWDYSKSTTES--KRTVTTNFPIWRGRYLPFGEG- 259 (1081)
T ss_pred eccCCCc--ceEEecccceeeehHHHhhhh-hhhhcccCCCCceeeeccccccccc--ceeccccCcceeccccccCce-
Confidence 9987765 345678899999999987642 2246788899999999986532211 111122334444445555421
Q ss_pred ceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCC------CCCCcEEEEEeCCCcEE
Q 036510 165 ALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNL------GLPKSTIASASEDGKVI 238 (288)
Q Consensus 165 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~------~~~~~~l~s~s~D~~i~ 238 (288)
+..-.+..++.+----.++.-+.|+..++ .+.++.+.||++.|..+.|-... ...+-+|++-|.|.++|
T Consensus 260 --~~~mp~~G~n~v~~~~c~n~d~e~n~~~~---~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lr 334 (1081)
T KOG0309|consen 260 --YCIMPMVGGNMVPQLRCENSDLEWNVFDL---NTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLR 334 (1081)
T ss_pred --eEeccccCCeeeeeccccchhhhhccccC---CcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceE
Confidence 11011111111112223444455555543 25678899999999988886532 11245799999999999
Q ss_pred EEEeec
Q 036510 239 IWTVAR 244 (288)
Q Consensus 239 iw~~~~ 244 (288)
+|-+..
T Consensus 335 lWpI~~ 340 (1081)
T KOG0309|consen 335 LWPIDS 340 (1081)
T ss_pred eeeccH
Confidence 998864
No 262
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.01 E-value=5.1e-09 Score=91.98 Aligned_cols=255 Identities=15% Similarity=0.169 Sum_probs=156.1
Q ss_pred ccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCC-----CceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcE
Q 036510 7 ETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNN-----TSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTV 81 (288)
Q Consensus 7 ~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~-----~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v 81 (288)
+.||+..|..+.--.+.+-++|++.|++|++|.+..+ +..+-.++..|+.+|.++.|-.+ .++++ |.|+-+
T Consensus 731 f~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~--lr~i~--ScD~gi 806 (1034)
T KOG4190|consen 731 FTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLAD--LRSIA--SCDGGI 806 (1034)
T ss_pred ccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeec--cceee--eccCcc
Confidence 5699998888765456677999999999999988521 22356788999999999999753 45555 568999
Q ss_pred EEeecCCCCceEEeEE--eecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEee--ccCCCCeeEEEe
Q 036510 82 IIWKEGNSNEWIKDHV--FEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRID--QAHPVGVTSVSW 157 (288)
Q Consensus 82 ~iwd~~~~~~~~~~~~--~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~--~~~~~~v~~i~~ 157 (288)
.+||..-+.....+.. ..+..+.|.|+. +- ....+++.++...+++++|.|..+=...+++- .+-+..+.++..
T Consensus 807 HlWDPFigr~Laq~~dapk~~a~~~ikcl~-nv-~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV 884 (1034)
T KOG4190|consen 807 HLWDPFIGRLLAQMEDAPKEGAGGNIKCLE-NV-DRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV 884 (1034)
T ss_pred eeecccccchhHhhhcCcccCCCceeEecc-cC-cchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence 9999765432111111 112334566663 11 22344555588999999999875422333332 223345667776
Q ss_pred CCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCcee-----ee-------------eeeccccCCcceEEEEecC
Q 036510 158 APSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWK-----MD-------------CFPALQMHTDWVRDVAWAP 219 (288)
Q Consensus 158 ~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-----~~-------------~~~~~~~h~~~V~~v~~sp 219 (288)
.|.+ +.++.+-..|+|-+.|.++|..- .+ ..++-..|. .+|.|+.
T Consensus 885 a~~G--------------N~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaapsdq~L~~saldHs---laVnWha 947 (1034)
T KOG4190|consen 885 ADKG--------------NKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAAPSDQALAQSALDHS---LAVNWHA 947 (1034)
T ss_pred ccCc--------------chhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcCchhHHHHhhcccce---eEeeehh
Confidence 6655 66777777888888888877310 00 111112333 3444544
Q ss_pred CCCC-----------------CCcEEEEEeCCCcEEEEEeecCCCc-ccceE--eeccccCeEEEEeecCCCEEEEEeCC
Q 036510 220 NLGL-----------------PKSTIASASEDGKVIIWTVAREGDQ-WEGKV--LHDFKTPVYRVSWSLTGNILAVADGN 279 (288)
Q Consensus 220 ~~~~-----------------~~~~l~s~s~D~~i~iw~~~~~~~~-~~~~~--~~~~~~~i~~~~~spdg~~l~s~~~d 279 (288)
-.+. -+--||++-..+.+.+|.-....+. ...+. -.++.+..++++--|-..-++.|.+.
T Consensus 948 ldgimh~q~kpppepahflqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~ 1027 (1034)
T KOG4190|consen 948 LDGIMHLQDKPPPEPAHFLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEH 1027 (1034)
T ss_pred cCCeeeeccCCCCcchhhhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCC
Confidence 2110 0124778877778888853321110 00001 12455677888888888878889888
Q ss_pred CcEEE
Q 036510 280 NNVTL 284 (288)
Q Consensus 280 ~~v~~ 284 (288)
|.|.+
T Consensus 1028 G~IaL 1032 (1034)
T KOG4190|consen 1028 GAIAL 1032 (1034)
T ss_pred Cceee
Confidence 98876
No 263
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.99 E-value=4.5e-07 Score=81.96 Aligned_cols=217 Identities=15% Similarity=0.147 Sum_probs=112.9
Q ss_pred cccceEEEEEcCCCCEEEEeeCC-C--cEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEE-EeeCCCc--EEE
Q 036510 10 HEDTVHDVAMDYYGKRLATASSD-Y--SIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILA-SCSFDGT--VII 83 (288)
Q Consensus 10 h~~~v~~~~~s~~g~~l~s~~~d-~--~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~s~d~~--v~i 83 (288)
+...+....|+|||++|+-.+.+ + .|.++|+..+..+.+..+.+ .....+|+++ |+.|+ +.+.++. |.+
T Consensus 216 ~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g---~~~~~~wSPD--G~~La~~~~~~g~~~Iy~ 290 (448)
T PRK04792 216 SPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPG---INGAPRFSPD--GKKLALVLSKDGQPEIYV 290 (448)
T ss_pred CCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCC---CcCCeeECCC--CCEEEEEEeCCCCeEEEE
Confidence 34566678999999988776543 3 46667775443333333332 3346789875 67665 5566776 555
Q ss_pred eecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCc--EEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCC
Q 036510 84 WKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGN--ISVFTARADGGWDTSRIDQAHPVGVTSVSWAPST 161 (288)
Q Consensus 84 wd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~--i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~ 161 (288)
+|+.++. ...+..+........|+|++ ..++.+...++. |.++|+..+. ..... ..++ ......|+|++
T Consensus 291 ~dl~tg~----~~~lt~~~~~~~~p~wSpDG-~~I~f~s~~~g~~~Iy~~dl~~g~-~~~Lt-~~g~--~~~~~~~SpDG 361 (448)
T PRK04792 291 VDIATKA----LTRITRHRAIDTEPSWHPDG-KSLIFTSERGGKPQIYRVNLASGK-VSRLT-FEGE--QNLGGSITPDG 361 (448)
T ss_pred EECCCCC----eEECccCCCCccceEECCCC-CEEEEEECCCCCceEEEEECCCCC-EEEEe-cCCC--CCcCeeECCCC
Confidence 5665443 12344455556778999985 233444444454 4445554332 21111 1222 23356889987
Q ss_pred CCCceecccccCCCceeE-EeecCCcEEE--EEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEe-CCCc-
Q 036510 162 APGALVGSGFLDPVQKLC-SGGCDNTVKV--WKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASAS-EDGK- 236 (288)
Q Consensus 162 ~~~~~~~~~~~~~~~~l~-s~~~d~~i~i--wd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s-~D~~- 236 (288)
+.++ +...++...| +|+.++.. +. +... .......|+|++ ++|+..+ .++.
T Consensus 362 --------------~~l~~~~~~~g~~~I~~~dl~~g~~--~~---lt~~-~~d~~ps~spdG----~~I~~~~~~~g~~ 417 (448)
T PRK04792 362 --------------RSMIMVNRTNGKFNIARQDLETGAM--QV---LTST-RLDESPSVAPNG----TMVIYSTTYQGKQ 417 (448)
T ss_pred --------------CEEEEEEecCCceEEEEEECCCCCe--EE---ccCC-CCCCCceECCCC----CEEEEEEecCCce
Confidence 3443 3333444444 56555421 11 1111 112244799985 4555544 4444
Q ss_pred -EEEEEeecCCCcccceEeeccccCeEEEEeec
Q 036510 237 -VIIWTVAREGDQWEGKVLHDFKTPVYRVSWSL 268 (288)
Q Consensus 237 -i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~sp 268 (288)
+.+++... . ....+....+.+...+|+|
T Consensus 418 ~l~~~~~~G--~--~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 418 VLAAVSIDG--R--FKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred EEEEEECCC--C--ceEECcCCCCCcCCCccCC
Confidence 55555431 1 1122333334566778877
No 264
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.96 E-value=4.4e-08 Score=88.59 Aligned_cols=245 Identities=17% Similarity=0.336 Sum_probs=151.3
Q ss_pred cccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCC------c-------eeeEEEeccccCeEEEEecCCCCCCEE
Q 036510 6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNT------S-------QHLAKLSGHKGAVWEVAWAHPKFGSIL 72 (288)
Q Consensus 6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~------~-------~~~~~~~~h~~~v~~~~~~~~~~~~~l 72 (288)
+.-.......+++|+....|++.||.||.+++-.+...+ + ..-+++.||..+|.-+.|+.. .+.|
T Consensus 9 i~iPnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~--~QKL 86 (1189)
T KOG2041|consen 9 IGIPNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNEN--NQKL 86 (1189)
T ss_pred cCCCCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccc--cccc
Confidence 333556778899999988899999999999998764221 1 113668899999999999743 6789
Q ss_pred EEeeCCCcEEEeecCCCCceEEeEEe-ecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCC
Q 036510 73 ASCSFDGTVIIWKEGNSNEWIKDHVF-EDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVG 151 (288)
Q Consensus 73 ~s~s~d~~v~iwd~~~~~~~~~~~~~-~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~ 151 (288)
.|...+|-|.+|-+-.+. |.. ..+ ...+..|.+++|+.++ ..++..-.||.|.+=.+.-++.|..- +++ ..
T Consensus 87 TtSDt~GlIiVWmlykgs-W~E-EMiNnRnKSvV~SmsWn~dG--~kIcIvYeDGavIVGsvdGNRIwgKe--Lkg--~~ 158 (1189)
T KOG2041|consen 87 TTSDTSGLIIVWMLYKGS-WCE-EMINNRNKSVVVSMSWNLDG--TKICIVYEDGAVIVGSVDGNRIWGKE--LKG--QL 158 (1189)
T ss_pred cccCCCceEEEEeeeccc-HHH-HHhhCcCccEEEEEEEcCCC--cEEEEEEccCCEEEEeeccceecchh--cch--he
Confidence 999999999999876543 211 111 1244578899999884 44555566777765444332222211 111 12
Q ss_pred eeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceee----eeee----ccccCCcceEEEEecCCC--
Q 036510 152 VTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKM----DCFP----ALQMHTDWVRDVAWAPNL-- 221 (288)
Q Consensus 152 v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~----~~~~----~~~~h~~~V~~v~~sp~~-- 221 (288)
..-+.|+|+. ..+.-+-+.+.+.++|.... +.+ .+.- .+......|-.+.|...-
T Consensus 159 l~hv~ws~D~--------------~~~Lf~~ange~hlydnqgn-F~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~ 223 (1189)
T KOG2041|consen 159 LAHVLWSEDL--------------EQALFKKANGETHLYDNQGN-FERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQ 223 (1189)
T ss_pred ccceeecccH--------------HHHHhhhcCCcEEEeccccc-HHHhhhhceEEeeeeeecCCCccccceeeccCccc
Confidence 3357799886 33444556678889887543 111 1100 111122235566665321
Q ss_pred --CCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCC
Q 036510 222 --GLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGN 279 (288)
Q Consensus 222 --~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d 279 (288)
..+.-.||.+-..|.+.|-.-..-.. -.+.+.+-.+..++|+|+|..||+++.|
T Consensus 224 ~v~pdrP~lavcy~nGr~QiMR~eND~~----Pvv~dtgm~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 224 PVPPDRPRLAVCYANGRMQIMRSENDPE----PVVVDTGMKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred cCCCCCCEEEEEEcCceehhhhhcCCCC----CeEEecccEeecceecCCCcEEEEccCc
Confidence 00123577788888888865332111 1222223468899999999999999754
No 265
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.94 E-value=1.7e-06 Score=85.58 Aligned_cols=241 Identities=10% Similarity=0.059 Sum_probs=141.9
Q ss_pred EEEEEcCC-CCEEEEeeCCCcEEEEEeCCCCceeeEEEec--------------cccCeEEEEecCCCCCC-EEEEeeCC
Q 036510 15 HDVAMDYY-GKRLATASSDYSIKIIGVGNNTSQHLAKLSG--------------HKGAVWEVAWAHPKFGS-ILASCSFD 78 (288)
Q Consensus 15 ~~~~~s~~-g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~--------------h~~~v~~~~~~~~~~~~-~l~s~s~d 78 (288)
..+++++. |+++++-...+.|+++|.++. .+..+.+ +-..-.++++.++ ++ ++++-...
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~---~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~--gn~LYVaDt~n 645 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGN---FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAK--KNLLYVADTEN 645 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCC---EEEEEccCCCcCCCCCchhccccCCCcEEEEeCC--CCEEEEEeCCC
Confidence 35778764 677888778888999987532 2222221 1112367787643 44 45555567
Q ss_pred CcEEEeecCCCCceEEeEEeec--C---------------CCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeee
Q 036510 79 GTVIIWKEGNSNEWIKDHVFED--H---------------KSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDT 141 (288)
Q Consensus 79 ~~v~iwd~~~~~~~~~~~~~~~--h---------------~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~ 141 (288)
+.|+++|..++. +.++.+ . -..-..++++|++ +.++++...++.|++||...+.. ..
T Consensus 646 ~~Ir~id~~~~~----V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~-g~LyVad~~~~~I~v~d~~~g~v-~~ 719 (1057)
T PLN02919 646 HALREIDFVNET----VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVN-EKVYIAMAGQHQIWEYNISDGVT-RV 719 (1057)
T ss_pred ceEEEEecCCCE----EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCC-CeEEEEECCCCeEEEEECCCCeE-EE
Confidence 889998875532 222211 0 1123578898853 56677778888999999765321 11
Q ss_pred EEe------eccCC------CCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeee--------
Q 036510 142 SRI------DQAHP------VGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDC-------- 201 (288)
Q Consensus 142 ~~~------~~~~~------~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-------- 201 (288)
..- ..++. .....|.++|++. .++++-+.++.|++||+.++......
T Consensus 720 ~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~-------------~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~ 786 (1057)
T PLN02919 720 FSGDGYERNLNGSSGTSTSFAQPSGISLSPDLK-------------ELYIADSESSSIRALDLKTGGSRLLAGGDPTFSD 786 (1057)
T ss_pred EecCCccccCCCCccccccccCccEEEEeCCCC-------------EEEEEECCCCeEEEEECCCCcEEEEEecccccCc
Confidence 000 00000 1123455666541 35667777899999998765311100
Q ss_pred -eeccccC--------CcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeecc--------------c
Q 036510 202 -FPALQMH--------TDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDF--------------K 258 (288)
Q Consensus 202 -~~~~~~h--------~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~--------------~ 258 (288)
...+..+ -..-..+.++|++ ..+++-+.++.|++||..... ...+.+. -
T Consensus 787 ~l~~fG~~dG~g~~~~l~~P~Gvavd~dG----~LYVADs~N~rIrviD~~tg~----v~tiaG~G~~G~~dG~~~~a~l 858 (1057)
T PLN02919 787 NLFKFGDHDGVGSEVLLQHPLGVLCAKDG----QIYVADSYNHKIKKLDPATKR----VTTLAGTGKAGFKDGKALKAQL 858 (1057)
T ss_pred ccccccCCCCchhhhhccCCceeeEeCCC----cEEEEECCCCEEEEEECCCCe----EEEEeccCCcCCCCCccccccc
Confidence 0000000 0012467888863 578888899999999986431 1111110 1
Q ss_pred cCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510 259 TPVYRVSWSLTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 259 ~~i~~~~~spdg~~l~s~~~d~~v~~w~~ 287 (288)
.....++++|+|+.+++-+.++.|++||.
T Consensus 859 ~~P~GIavd~dG~lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 859 SEPAGLALGENGRLFVADTNNSLIRYLDL 887 (1057)
T ss_pred CCceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 24678999999998888888999999995
No 266
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=6.9e-07 Score=78.78 Aligned_cols=246 Identities=16% Similarity=0.253 Sum_probs=143.0
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeC-----------CCcEEEe
Q 036510 16 DVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSF-----------DGTVIIW 84 (288)
Q Consensus 16 ~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-----------d~~v~iw 84 (288)
-+.|||.|+||+|--..| |.+|.- +....++.+. | ..|..+.|||. .+||+|-|. ...++||
T Consensus 215 yv~wSP~GTYL~t~Hk~G-I~lWGG--~~f~r~~RF~-H-p~Vq~idfSP~--EkYLVT~s~~p~~~~~~d~e~~~l~IW 287 (698)
T KOG2314|consen 215 YVRWSPKGTYLVTFHKQG-IALWGG--ESFDRIQRFY-H-PGVQFIDFSPN--EKYLVTYSPEPIIVEEDDNEGQQLIIW 287 (698)
T ss_pred eEEecCCceEEEEEeccc-eeeecC--ccHHHHHhcc-C-CCceeeecCCc--cceEEEecCCccccCcccCCCceEEEE
Confidence 368999999999877665 678853 2333344443 4 45788999875 789998763 3788999
Q ss_pred ecCCCCceEEeEEeec--CCCceeE-EEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCC
Q 036510 85 KEGNSNEWIKDHVFED--HKSSVNS-IDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPST 161 (288)
Q Consensus 85 d~~~~~~~~~~~~~~~--h~~~v~~-l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~ 161 (288)
|++++. +.+.+.. ....++. ..|+-| .+++|.... +.|.||+... +.++....--..+|....|+|.+
T Consensus 288 DI~tG~---lkrsF~~~~~~~~~WP~frWS~D--dKy~Arm~~-~sisIyEtps---f~lld~Kslki~gIr~FswsP~~ 358 (698)
T KOG2314|consen 288 DIATGL---LKRSFPVIKSPYLKWPIFRWSHD--DKYFARMTG-NSISIYETPS---FMLLDKKSLKISGIRDFSWSPTS 358 (698)
T ss_pred Eccccc---hhcceeccCCCccccceEEeccC--CceeEEecc-ceEEEEecCc---eeeecccccCCccccCcccCCCc
Confidence 999875 2333432 2223333 478876 577887765 5788998754 22222111123568888899886
Q ss_pred CCCcee-----------cc------------ccc----------CCCceeEEe----------ecCCcEEEEEEeCCcee
Q 036510 162 APGALV-----------GS------------GFL----------DPVQKLCSG----------GCDNTVKVWKLYNGIWK 198 (288)
Q Consensus 162 ~~~~~~-----------~~------------~~~----------~~~~~l~s~----------~~d~~i~iwd~~~~~~~ 198 (288)
...++. +. +++ ..+.+||.- +.=..+-|+.+++..-+
T Consensus 359 ~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIp 438 (698)
T KOG2314|consen 359 NLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIP 438 (698)
T ss_pred ceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCC
Confidence 432211 00 000 123333321 11112333333332111
Q ss_pred eeeeeccccCCcceEEEEecCCCCCCCcEEEEEeC---CCcEEEEEeecCCCcccceEeeccc-cCeEEEEeecCCCEEE
Q 036510 199 MDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASE---DGKVIIWTVAREGDQWEGKVLHDFK-TPVYRVSWSLTGNILA 274 (288)
Q Consensus 199 ~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~---D~~i~iw~~~~~~~~~~~~~~~~~~-~~i~~~~~spdg~~l~ 274 (288)
.. . -.-++.|-.++|-|.+ ..++.-+. -.++.+|.++..... -++++.+. ...+.+.|+|.|++++
T Consensus 439 ve---~-velke~vi~FaWEP~g----dkF~vi~g~~~k~tvsfY~~e~~~~~--~~lVk~~dk~~~N~vfwsPkG~fvv 508 (698)
T KOG2314|consen 439 VE---V-VELKESVIAFAWEPHG----DKFAVISGNTVKNTVSFYAVETNIKK--PSLVKELDKKFANTVFWSPKGRFVV 508 (698)
T ss_pred ce---e-eecchheeeeeeccCC----CeEEEEEccccccceeEEEeecCCCc--hhhhhhhcccccceEEEcCCCcEEE
Confidence 11 1 1124568888999975 44554443 347999988743221 13333333 3567899999999998
Q ss_pred EEe---CCCcEEEeEc
Q 036510 275 VAD---GNNNVTLWEE 287 (288)
Q Consensus 275 s~~---~d~~v~~w~~ 287 (288)
++. ..|.+.++|+
T Consensus 509 va~l~s~~g~l~F~D~ 524 (698)
T KOG2314|consen 509 VAALVSRRGDLEFYDT 524 (698)
T ss_pred EEEecccccceEEEec
Confidence 884 4678888884
No 267
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.89 E-value=1.3e-08 Score=81.51 Aligned_cols=153 Identities=15% Similarity=0.228 Sum_probs=98.1
Q ss_pred EcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEe-ccccCeEEEEecCCCCCCEEEEee-----CCCcEEEeecCCCCce
Q 036510 19 MDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLS-GHKGAVWEVAWAHPKFGSILASCS-----FDGTVIIWKEGNSNEW 92 (288)
Q Consensus 19 ~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s-----~d~~v~iwd~~~~~~~ 92 (288)
.+-.++.++.+..|+.+.+.+.+. ......++. -|.+.. +.++-+. ++.+.++. +-+..++|+++..++.
T Consensus 97 ~s~~~t~V~~~~~dg~~~v~s~~~-~~~~~~~i~~~~~~~a-s~~~~~~--~~~i~s~~~g~~n~~d~~~a~~~~p~~t~ 172 (319)
T KOG4714|consen 97 CTMTDNRVCIGYADGSLAVFSTDK-DLALMSRIPSIHSGSA-SRKICRH--GNSILSGGCGNWNAQDNFYANTLDPIKTL 172 (319)
T ss_pred ccccCCceEecCCCceEEEEechH-HHhhhhhccccccccc-ccceeec--ccEEecCCcceEeeccceeeecccccccc
Confidence 444477899999999999988743 111111111 122211 1222221 34444433 2334455655443322
Q ss_pred EEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceeccccc
Q 036510 93 IKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFL 172 (288)
Q Consensus 93 ~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~ 172 (288)
+.. . .-.+.|.+++-||.. ..++++|+.||.+.+||.|.. .++...+++|...+..+-|.|..+
T Consensus 173 ~~~-~--~~~~~v~~l~~hp~q-q~~v~cgt~dg~~~l~d~rn~--~~p~S~l~ahk~~i~eV~FHpk~p---------- 236 (319)
T KOG4714|consen 173 IPS-K--KALDAVTALCSHPAQ-QHLVCCGTDDGIVGLWDARNV--AMPVSLLKAHKAEIWEVHFHPKNP---------- 236 (319)
T ss_pred ccc-c--cccccchhhhCCccc-ccEEEEecCCCeEEEEEcccc--cchHHHHHHhhhhhhheeccCCCc----------
Confidence 111 1 122358999999986 567899999999999999865 345566788999999999999875
Q ss_pred CCCceeEEeecCCcEEEEEEeC
Q 036510 173 DPVQKLCSGGCDNTVKVWKLYN 194 (288)
Q Consensus 173 ~~~~~l~s~~~d~~i~iwd~~~ 194 (288)
..|.++++||.+-.||..+
T Consensus 237 ---~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 237 ---EHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ---hheeEecCCCcEEEEcCCC
Confidence 5688899999999999864
No 268
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.86 E-value=3.6e-08 Score=81.04 Aligned_cols=212 Identities=17% Similarity=0.274 Sum_probs=126.1
Q ss_pred ccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCC--ceEEeEEeecC------------CCceeEEEeccCCCCeEEE
Q 036510 55 KGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSN--EWIKDHVFEDH------------KSSVNSIDWAPHELGLCLA 120 (288)
Q Consensus 55 ~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~--~~~~~~~~~~h------------~~~v~~l~~~p~~~~~~l~ 120 (288)
.+-|+++.|... |.+|++|...|.|.++...... ++.....+..| ...|+.+.|..+..-..++
T Consensus 26 ad~ItaVefd~t--g~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFL 103 (460)
T COG5170 26 ADKITAVEFDET--GLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFL 103 (460)
T ss_pred cceeeEEEeccc--cceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEE
Confidence 456888998754 8999999999999999754322 01011112222 2468888887553222344
Q ss_pred EEeCCCcEEEEeecCCCC-------------------e------e--------------eEEe-eccCCCCeeEEEeCCC
Q 036510 121 CGSSDGNISVFTARADGG-------------------W------D--------------TSRI-DQAHPVGVTSVSWAPS 160 (288)
Q Consensus 121 sg~~d~~i~i~d~~~~~~-------------------~------~--------------~~~~-~~~~~~~v~~i~~~p~ 160 (288)
..+.|++|++|.+.+.+. . . +.++ ..+|+..+.+|+++.+
T Consensus 104 lstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD 183 (460)
T COG5170 104 LSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSD 183 (460)
T ss_pred EecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCc
Confidence 456899999998864310 0 0 0000 1245555666666555
Q ss_pred CCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeee----ccccCCcceEEEEecCCCCCCCcEEEEEeCCCc
Q 036510 161 TAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFP----ALQMHTDWVRDVAWAPNLGLPKSTIASASEDGK 236 (288)
Q Consensus 161 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~----~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~ 236 (288)
. ..++++ .|=.|.+|++......+..+. .+..-..-|++..|+|.. -..+--.++-|+
T Consensus 184 ~--------------et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~---cn~fmYSsSkG~ 245 (460)
T COG5170 184 K--------------ETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEM---CNVFMYSSSKGE 245 (460)
T ss_pred h--------------heeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhH---cceEEEecCCCc
Confidence 3 445543 466788998764322222111 111223357888999964 245666778899
Q ss_pred EEEEEeecCCCcc-----cceEee--------ccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510 237 VIIWTVAREGDQW-----EGKVLH--------DFKTPVYRVSWSLTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 237 i~iw~~~~~~~~~-----~~~~~~--------~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~ 287 (288)
|++-|++....+. ....+. +.-..|..++|+|+|++|++-+ --+|+|||.
T Consensus 246 Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDv 308 (460)
T COG5170 246 IKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDV 308 (460)
T ss_pred EEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEec
Confidence 9999998432110 111111 1224688899999999998774 479999995
No 269
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.84 E-value=6.3e-06 Score=80.33 Aligned_cols=247 Identities=17% Similarity=0.282 Sum_probs=146.1
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCcEEEEEeC----------C---CCceee-----------------------------
Q 036510 11 EDTVHDVAMDYYGKRLATASSDYSIKIIGVG----------N---NTSQHL----------------------------- 48 (288)
Q Consensus 11 ~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~----------~---~~~~~~----------------------------- 48 (288)
+.+|.+.+||||+..|+-...++++-+...+ . +..+.+
T Consensus 120 d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~ 199 (928)
T PF04762_consen 120 DSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVP 199 (928)
T ss_pred cCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCC
Confidence 5689999999999998888888887663211 0 000000
Q ss_pred ----EEEeccccCeEEEEecCCCCCCEEEEeeC----C--CcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeE
Q 036510 49 ----AKLSGHKGAVWEVAWAHPKFGSILASCSF----D--GTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLC 118 (288)
Q Consensus 49 ----~~~~~h~~~v~~~~~~~~~~~~~l~s~s~----d--~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~ 118 (288)
..+. +.+.-..|+|.. ||++||..+. + +.+|||+.. +. +..+-..-.+--.+++|-|. |.+
T Consensus 200 ~~d~~~~s-~dd~~~~ISWRG--DG~yFAVss~~~~~~~~R~iRVy~Re-G~---L~stSE~v~gLe~~l~WrPs--G~l 270 (928)
T PF04762_consen 200 KVDEGKLS-WDDGRVRISWRG--DGEYFAVSSVEPETGSRRVIRVYSRE-GE---LQSTSEPVDGLEGALSWRPS--GNL 270 (928)
T ss_pred ccccCccc-cCCCceEEEECC--CCcEEEEEEEEcCCCceeEEEEECCC-ce---EEeccccCCCccCCccCCCC--CCE
Confidence 0111 333456788964 5999998764 2 689999754 32 22222222223357899998 556
Q ss_pred EEEEeC-C--CcEEEEeecCCCCeeeEEeec-cCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeC
Q 036510 119 LACGSS-D--GNISVFTARADGGWDTSRIDQ-AHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYN 194 (288)
Q Consensus 119 l~sg~~-d--~~i~i~d~~~~~~~~~~~~~~-~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 194 (288)
+|+.-. . -.|.+|. |++.....+.... .....|..+.|++++ ..|+.--.| .|.+|-+.+
T Consensus 271 IA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds--------------~iLAv~~~~-~vqLWt~~N 334 (928)
T PF04762_consen 271 IASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDS--------------EILAVWLED-RVQLWTRSN 334 (928)
T ss_pred EEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCC--------------CEEEEEecC-CceEEEeeC
Confidence 665532 1 2333332 2332222222221 234568999999997 566665544 499998876
Q ss_pred CceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecC----CC-----cccce-------Eee---
Q 036510 195 GIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVARE----GD-----QWEGK-------VLH--- 255 (288)
Q Consensus 195 ~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~----~~-----~~~~~-------~~~--- 255 (288)
-.|=+|+...+... ..+..+.|+|.. +..|.....++.+..++.... .. ..... .+.
T Consensus 335 YHWYLKqei~~~~~-~~~~~~~Wdpe~---p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~ 410 (928)
T PF04762_consen 335 YHWYLKQEIRFSSS-ESVNFVKWDPEK---PLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFR 410 (928)
T ss_pred CEEEEEEEEEccCC-CCCCceEECCCC---CCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEeccc
Confidence 55544432222222 234559999974 456777777666655444321 00 00000 001
Q ss_pred -------------ccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510 256 -------------DFKTPVYRVSWSLTGNILAVADGNNNVTLWE 286 (288)
Q Consensus 256 -------------~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~ 286 (288)
.+..+|..++|++++..+++-..||+|.+|+
T Consensus 411 ~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~ 454 (928)
T PF04762_consen 411 RAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYE 454 (928)
T ss_pred ccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEE
Confidence 2346799999999999999999999999997
No 270
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.80 E-value=1.2e-05 Score=70.80 Aligned_cols=192 Identities=13% Similarity=0.133 Sum_probs=103.6
Q ss_pred CEE-EEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCC
Q 036510 24 KRL-ATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHK 102 (288)
Q Consensus 24 ~~l-~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~ 102 (288)
+++ ++-..++++.+.|.. +.+.+..+......-..+.|+++ |+++..++.|+.|.++|+.+.. ...++.. .
T Consensus 6 ~l~~V~~~~~~~v~viD~~--t~~~~~~i~~~~~~h~~~~~s~D--gr~~yv~~rdg~vsviD~~~~~---~v~~i~~-G 77 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGA--TNKVVARIPTGGAPHAGLKFSPD--GRYLYVANRDGTVSVIDLATGK---VVATIKV-G 77 (369)
T ss_dssp GEEEEEEGGGTEEEEEETT--T-SEEEEEE-STTEEEEEE-TT---SSEEEEEETTSEEEEEETTSSS---EEEEEE--S
T ss_pred cEEEEEecCCCEEEEEECC--CCeEEEEEcCCCCceeEEEecCC--CCEEEEEcCCCeEEEEECCccc---EEEEEec-C
Confidence 444 456678999998864 34667777654333234667754 8888888999999999998766 3334443 2
Q ss_pred CceeEEEeccCCCCeEEE-EEeCCCcEEEEeecCCCCeeeEEeec----cCCCCeeEEEeCCCCCCCceecccccCCCce
Q 036510 103 SSVNSIDWAPHELGLCLA-CGSSDGNISVFTARADGGWDTSRIDQ----AHPVGVTSVSWAPSTAPGALVGSGFLDPVQK 177 (288)
Q Consensus 103 ~~v~~l~~~p~~~~~~l~-sg~~d~~i~i~d~~~~~~~~~~~~~~----~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~ 177 (288)
....+++++|+ +++++ +.-..+.+.++|.++........... .....+..|..+|..+ .+
T Consensus 78 ~~~~~i~~s~D--G~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~-------------~f 142 (369)
T PF02239_consen 78 GNPRGIAVSPD--GKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRP-------------EF 142 (369)
T ss_dssp SEEEEEEE--T--TTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSS-------------EE
T ss_pred CCcceEEEcCC--CCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCC-------------EE
Confidence 34678999998 45444 55678999999987643222111100 1223466676666552 23
Q ss_pred eEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeec
Q 036510 178 LCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAR 244 (288)
Q Consensus 178 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~ 244 (288)
+++--.-+.|-+.|..... .+ ....+. ....-....|.|++. .++++....+.|-++|...
T Consensus 143 Vv~lkd~~~I~vVdy~d~~-~~-~~~~i~-~g~~~~D~~~dpdgr---y~~va~~~sn~i~viD~~~ 203 (369)
T PF02239_consen 143 VVNLKDTGEIWVVDYSDPK-NL-KVTTIK-VGRFPHDGGFDPDGR---YFLVAANGSNKIAVIDTKT 203 (369)
T ss_dssp EEEETTTTEEEEEETTTSS-CE-EEEEEE---TTEEEEEE-TTSS---EEEEEEGGGTEEEEEETTT
T ss_pred EEEEccCCeEEEEEecccc-cc-ceeeec-ccccccccccCcccc---eeeecccccceeEEEeecc
Confidence 3343333555555543321 11 111111 122346778888752 2345455566777777654
No 271
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.78 E-value=1.7e-07 Score=79.33 Aligned_cols=155 Identities=15% Similarity=0.134 Sum_probs=99.3
Q ss_pred EEcCCCCEEEEeeCCCcEEEEEeCCCC--ceeeEEEeccccCeEEEEecCC-CCCCEEEEeeCCCcEEEeecCCCCceEE
Q 036510 18 AMDYYGKRLATASSDYSIKIIGVGNNT--SQHLAKLSGHKGAVWEVAWAHP-KFGSILASCSFDGTVIIWKEGNSNEWIK 94 (288)
Q Consensus 18 ~~s~~g~~l~s~~~d~~i~lwd~~~~~--~~~~~~~~~h~~~v~~~~~~~~-~~~~~l~s~s~d~~v~iwd~~~~~~~~~ 94 (288)
..++++++||.+-.++...++++.... .+++....... .-.++.|... ....+....++...+.+|....+.
T Consensus 69 ~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~-~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~---- 143 (390)
T KOG3914|consen 69 LTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPK-RPTAISFIREDTSVLVADKAGDVYSFDILSADSGR---- 143 (390)
T ss_pred ccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeeccc-CcceeeeeeccceEEEEeecCCceeeeeecccccC----
Confidence 456778888888888876677664322 23332222211 1233333322 123333455666677777654322
Q ss_pred eEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCC
Q 036510 95 DHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDP 174 (288)
Q Consensus 95 ~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~ 174 (288)
...+-+|..-+..++|+|| ...++++..|.+|++-... .....-...-+|+..|..++.-++
T Consensus 144 ~~~~lGhvSml~dVavS~D--~~~IitaDRDEkIRvs~yp--a~f~IesfclGH~eFVS~isl~~~-------------- 205 (390)
T KOG3914|consen 144 CEPILGHVSMLLDVAVSPD--DQFIITADRDEKIRVSRYP--ATFVIESFCLGHKEFVSTISLTDN-------------- 205 (390)
T ss_pred cchhhhhhhhhheeeecCC--CCEEEEecCCceEEEEecC--cccchhhhccccHhheeeeeeccC--------------
Confidence 2234579999999999998 5779999999999985433 222222334578888888876665
Q ss_pred CceeEEeecCCcEEEEEEeCCc
Q 036510 175 VQKLCSGGCDNTVKVWKLYNGI 196 (288)
Q Consensus 175 ~~~l~s~~~d~~i~iwd~~~~~ 196 (288)
+.|+|||.|+++++||++++.
T Consensus 206 -~~LlS~sGD~tlr~Wd~~sgk 226 (390)
T KOG3914|consen 206 -YLLLSGSGDKTLRLWDITSGK 226 (390)
T ss_pred -ceeeecCCCCcEEEEecccCC
Confidence 458999999999999999873
No 272
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.77 E-value=9.6e-06 Score=71.06 Aligned_cols=196 Identities=16% Similarity=0.187 Sum_probs=110.9
Q ss_pred eEEEEecCCCCCCEEEE-----eeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeC--------
Q 036510 58 VWEVAWAHPKFGSILAS-----CSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSS-------- 124 (288)
Q Consensus 58 v~~~~~~~~~~~~~l~s-----~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~-------- 124 (288)
+....|+|-+++..|+. ...+++++||.+... ..+..+.+. .-.-..+.|++.+.-.++.+-..
T Consensus 176 i~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~-s~l~tk~lf--k~~~~qLkW~~~g~~ll~l~~t~~ksnKsyf 252 (561)
T COG5354 176 ILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKN-SVLVTKNLF--KVSGVQLKWQVLGKYLLVLVMTHTKSNKSYF 252 (561)
T ss_pred eeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCC-CeeeeeeeE--eecccEEEEecCCceEEEEEEEeeeccccee
Confidence 44455554333344442 355667777766432 222222322 11224567777643222222111
Q ss_pred -CCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeee
Q 036510 125 -DGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFP 203 (288)
Q Consensus 125 -d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 203 (288)
..+++|++++... + .+.....++|..+.|.|.+.. --+++|=-+..+.++|++.+. ..
T Consensus 253 gesnLyl~~~~e~~-i---~V~~~~~~pVhdf~W~p~S~~------------F~vi~g~~pa~~s~~~lr~Nl-----~~ 311 (561)
T COG5354 253 GESNLYLLRITERS-I---PVEKDLKDPVHDFTWEPLSSR------------FAVISGYMPASVSVFDLRGNL-----RF 311 (561)
T ss_pred ccceEEEEeecccc-c---ceeccccccceeeeecccCCc------------eeEEecccccceeecccccce-----EE
Confidence 2456777776332 1 122245678999999998731 114455567788889987752 11
Q ss_pred ccccCCcceEEEEecCCCCCCCcEEEEEeCCC---cEEEEEeecCCCcccceEeeccc-cCeEEEEeecCCCEEEEEe--
Q 036510 204 ALQMHTDWVRDVAWAPNLGLPKSTIASASEDG---KVIIWTVAREGDQWEGKVLHDFK-TPVYRVSWSLTGNILAVAD-- 277 (288)
Q Consensus 204 ~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~---~i~iw~~~~~~~~~~~~~~~~~~-~~i~~~~~spdg~~l~s~~-- 277 (288)
.+ ....=+.+.|+|.. .+++.++.|+ .|-+|+...+. ..+..+. ....-+.|+|||+++.+.-
T Consensus 312 ~~--Pe~~rNT~~fsp~~----r~il~agF~nl~gni~i~~~~~rf-----~~~~~~~~~n~s~~~wspd~qF~~~~~ts 380 (561)
T COG5354 312 YF--PEQKRNTIFFSPHE----RYILFAGFDNLQGNIEIFDPAGRF-----KVAGAFNGLNTSYCDWSPDGQFYDTDTTS 380 (561)
T ss_pred ec--CCcccccccccCcc----cEEEEecCCccccceEEeccCCce-----EEEEEeecCCceEeeccCCceEEEecCCC
Confidence 11 11222567899974 6788888765 69999876431 2221222 2345689999999988873
Q ss_pred ----CCCcEEEeEcC
Q 036510 278 ----GNNNVTLWEEA 288 (288)
Q Consensus 278 ----~d~~v~~w~~~ 288 (288)
.|+.|+||++.
T Consensus 381 ~k~~~Dn~i~l~~v~ 395 (561)
T COG5354 381 EKLRVDNSIKLWDVY 395 (561)
T ss_pred cccccCcceEEEEec
Confidence 38899999963
No 273
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=3.4e-06 Score=74.49 Aligned_cols=233 Identities=15% Similarity=0.222 Sum_probs=135.4
Q ss_pred EEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEE-----EeeCCCcEEEeecCCC
Q 036510 15 HDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILA-----SCSFDGTVIIWKEGNS 89 (288)
Q Consensus 15 ~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-----s~s~d~~v~iwd~~~~ 89 (288)
.+.+|++|..+. +==..+.+.+|+..+.. .....| |...|..+.+|+.+....++ +.++=+.|+||...-.
T Consensus 129 W~~qfs~dEsl~-arlv~nev~f~~~~~f~-~~~~kl--~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~ 204 (566)
T KOG2315|consen 129 WVPQFSIDESLA-ARLVSNEVQFYDLGSFK-TIQHKL--SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEE 204 (566)
T ss_pred cccccccchhhh-hhhhcceEEEEecCCcc-ceeeee--eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccc
Confidence 356788776432 22223678899875422 112222 56778888888642233343 3577788999976421
Q ss_pred C--ceEEeEEeecCCCceeEEEeccCCCCeE-EEEEeCCC---------cEEEEeecCCCCeeeEEeeccCCCCeeEEEe
Q 036510 90 N--EWIKDHVFEDHKSSVNSIDWAPHELGLC-LACGSSDG---------NISVFTARADGGWDTSRIDQAHPVGVTSVSW 157 (288)
Q Consensus 90 ~--~~~~~~~~~~h~~~v~~l~~~p~~~~~~-l~sg~~d~---------~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~ 157 (288)
. .....+++ ....=-.+.|++-+.+.+ |++..-|+ ++.++++. +.. . .+.-.-.++|.++.|
T Consensus 205 ~~~~~~a~ksF--Fkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~-g~s-~--~V~L~k~GPVhdv~W 278 (566)
T KOG2315|consen 205 GQHQPVANKSF--FKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ-GES-V--SVPLLKEGPVHDVTW 278 (566)
T ss_pred cccchhhhccc--cccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec-Cce-E--EEecCCCCCceEEEE
Confidence 1 11111222 111223467887665544 33333343 56666654 111 1 111123568999999
Q ss_pred CCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCC---
Q 036510 158 APSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASED--- 234 (288)
Q Consensus 158 ~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D--- 234 (288)
+|.+.+ +. +|-|=--.++.|+|++.. .+..+ ..++=+++-|+|.+ ++|+-++.+
T Consensus 279 ~~s~~E-F~-----------VvyGfMPAkvtifnlr~~-----~v~df--~egpRN~~~fnp~g----~ii~lAGFGNL~ 335 (566)
T KOG2315|consen 279 SPSGRE-FA-----------VVYGFMPAKVTIFNLRGK-----PVFDF--PEGPRNTAFFNPHG----NIILLAGFGNLP 335 (566)
T ss_pred CCCCCE-EE-----------EEEecccceEEEEcCCCC-----EeEeC--CCCCccceEECCCC----CEEEEeecCCCC
Confidence 998842 11 223333456888888653 33333 33345889999974 678877765
Q ss_pred CcEEEEEeecCCCcccceEeeccc-cCeEEEEeecCCCEEEEEeC------CCcEEEeE
Q 036510 235 GKVIIWTVAREGDQWEGKVLHDFK-TPVYRVSWSLTGNILAVADG------NNNVTLWE 286 (288)
Q Consensus 235 ~~i~iw~~~~~~~~~~~~~~~~~~-~~i~~~~~spdg~~l~s~~~------d~~v~~w~ 286 (288)
|.+-|||+...+ .+..+. ..-+-+.|+|||++|+++.- |+.++||.
T Consensus 336 G~mEvwDv~n~K------~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwh 388 (566)
T KOG2315|consen 336 GDMEVWDVPNRK------LIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWH 388 (566)
T ss_pred CceEEEeccchh------hccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEE
Confidence 479999987532 223332 23456899999999999963 89999997
No 274
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.75 E-value=3.7e-07 Score=77.38 Aligned_cols=159 Identities=13% Similarity=0.115 Sum_probs=100.7
Q ss_pred eEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCc-eEEeEEeecCCCceeEEEeccCCCCeEEEEE-eCCCcEEEEeecC
Q 036510 58 VWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNE-WIKDHVFEDHKSSVNSIDWAPHELGLCLACG-SSDGNISVFTARA 135 (288)
Q Consensus 58 v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~-~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg-~~d~~i~i~d~~~ 135 (288)
.+.+.+++ ++++|+.+-.++...+++.+...+ ..+...... ...-+++.+..+.....++-. +....+.+|....
T Consensus 65 ~~~~~~s~--~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~ 141 (390)
T KOG3914|consen 65 PALVLTSD--SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADS 141 (390)
T ss_pred ccccccCC--CceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeecccc
Confidence 34455543 478888888888877888765432 222222211 223344444444322222222 3334455554433
Q ss_pred CCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeec-cccCCcceEE
Q 036510 136 DGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPA-LQMHTDWVRD 214 (288)
Q Consensus 136 ~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~h~~~V~~ 214 (288)
+ ......+|-.-+..+.|+|+. ++++++..|..|++-.... . ..+.. .-||+..|..
T Consensus 142 ~----~~~~~lGhvSml~dVavS~D~--------------~~IitaDRDEkIRvs~ypa-~---f~IesfclGH~eFVS~ 199 (390)
T KOG3914|consen 142 G----RCEPILGHVSMLLDVAVSPDD--------------QFIITADRDEKIRVSRYPA-T---FVIESFCLGHKEFVST 199 (390)
T ss_pred c----CcchhhhhhhhhheeeecCCC--------------CEEEEecCCceEEEEecCc-c---cchhhhccccHhheee
Confidence 1 123445787789999999997 7899999999999865432 1 12223 3689999999
Q ss_pred EEecCCCCCCCcEEEEEeCCCcEEEEEeecCC
Q 036510 215 VAWAPNLGLPKSTIASASEDGKVIIWTVAREG 246 (288)
Q Consensus 215 v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~ 246 (288)
++.-++ +.|+|||.|+++++||+.+..
T Consensus 200 isl~~~-----~~LlS~sGD~tlr~Wd~~sgk 226 (390)
T KOG3914|consen 200 ISLTDN-----YLLLSGSGDKTLRLWDITSGK 226 (390)
T ss_pred eeeccC-----ceeeecCCCCcEEEEecccCC
Confidence 998875 568999999999999998754
No 275
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.74 E-value=2.5e-08 Score=87.71 Aligned_cols=174 Identities=17% Similarity=0.224 Sum_probs=113.9
Q ss_pred eEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCC----ceEEeEEeecCCCceeEEEeccCCCCeEEEEEe
Q 036510 48 LAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSN----EWIKDHVFEDHKSSVNSIDWAPHELGLCLACGS 123 (288)
Q Consensus 48 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~----~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~ 123 (288)
+..+.||+..|..++--. +.+-|+++|.|++|++|.++... +..+..++..|+.+|..+.|-.+ .+.++++
T Consensus 728 L~nf~GH~~~iRai~Aid--NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~--lr~i~Sc- 802 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAID--NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLAD--LRSIASC- 802 (1034)
T ss_pred eecccCcHHHhHHHHhcc--cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeec--cceeeec-
Confidence 567789999988877532 46789999999999999986532 22355677889999999999876 4556655
Q ss_pred CCCcEEEEeecCCCCeeeEE--eeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeee
Q 036510 124 SDGNISVFTARADGGWDTSR--IDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDC 201 (288)
Q Consensus 124 ~d~~i~i~d~~~~~~~~~~~--~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 201 (288)
|+-|.+||.=.+..+.... ..++....|.++ |+- +..-+++-++...+||++|.+...|.-+.
T Consensus 803 -D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl---~nv-----------~~~iliAgcsaeSTVKl~DaRsce~~~E~ 867 (1034)
T KOG4190|consen 803 -DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCL---ENV-----------DRHILIAGCSAESTVKLFDARSCEWTCEL 867 (1034)
T ss_pred -cCcceeecccccchhHhhhcCcccCCCceeEec---ccC-----------cchheeeeccchhhheeeecccccceeeE
Confidence 8899999964332111110 011111223333 221 00122334478899999999887654322
Q ss_pred -eeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecC
Q 036510 202 -FPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVARE 245 (288)
Q Consensus 202 -~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~ 245 (288)
+..-.+...-++++...|. ++.+++|-..|.|.+-|.+..
T Consensus 868 kVcna~~Pna~~R~iaVa~~----GN~lAa~LSnGci~~LDaR~G 908 (1034)
T KOG4190|consen 868 KVCNAPGPNALTRAIAVADK----GNKLAAALSNGCIAILDARNG 908 (1034)
T ss_pred EeccCCCCchheeEEEeccC----cchhhHHhcCCcEEEEecCCC
Confidence 1112344456888888886 478999999999999997753
No 276
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.73 E-value=5.6e-08 Score=56.07 Aligned_cols=38 Identities=34% Similarity=0.728 Sum_probs=35.2
Q ss_pred eeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEee
Q 036510 46 QHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK 85 (288)
Q Consensus 46 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd 85 (288)
+++.++.+|...|++++|+++ +.+|++++.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~--~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPD--GNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETT--SSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecc--cccceeeCCCCEEEEEC
Confidence 568899999999999999875 89999999999999997
No 277
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.72 E-value=4.8e-08 Score=56.38 Aligned_cols=38 Identities=29% Similarity=0.774 Sum_probs=34.1
Q ss_pred eeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEE
Q 036510 200 DCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWT 241 (288)
Q Consensus 200 ~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~ 241 (288)
+++..+.+|.+.|++++|+|+ +.+|++++.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~----~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPD----GNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETT----SSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecc----cccceeeCCCCEEEEEC
Confidence 356678999999999999998 47899999999999997
No 278
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.72 E-value=8.7e-05 Score=60.86 Aligned_cols=235 Identities=18% Similarity=0.263 Sum_probs=118.5
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEe---ccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCce
Q 036510 16 DVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLS---GHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEW 92 (288)
Q Consensus 16 ~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~ 92 (288)
.++.+.+|+.||. =.|..|.|=....+=...+.... .....=.-++||++ +.+||.+...|+|+++|+.....+
T Consensus 2 ~~~~~~~Gk~lAi-~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD--~tlLa~a~S~G~i~vfdl~g~~lf 78 (282)
T PF15492_consen 2 HLALSSDGKLLAI-LQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPD--CTLLAYAESTGTIRVFDLMGSELF 78 (282)
T ss_pred ceeecCCCcEEEE-EeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCC--CcEEEEEcCCCeEEEEecccceeE
Confidence 3567788977664 45656665433211011111111 22223466999975 899999999999999998643211
Q ss_pred E--EeEEee-cCCCceeEEEeccCCC----CeEEEEEeCCCcEEEEeecC--CCCee---eEEeeccCCCCeeEEEeCCC
Q 036510 93 I--KDHVFE-DHKSSVNSIDWAPHEL----GLCLACGSSDGNISVFTARA--DGGWD---TSRIDQAHPVGVTSVSWAPS 160 (288)
Q Consensus 93 ~--~~~~~~-~h~~~v~~l~~~p~~~----~~~l~sg~~d~~i~i~d~~~--~~~~~---~~~~~~~~~~~v~~i~~~p~ 160 (288)
. ...... .-...|..+.|-+-.. ...|+.-..+|.++-|-+.. .+... .+.....++.+|.++.+.|.
T Consensus 79 ~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~ 158 (282)
T PF15492_consen 79 VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPK 158 (282)
T ss_pred EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCC
Confidence 0 000011 1234566666643210 12355556778887776532 22222 22333445778999999887
Q ss_pred CCCCceecccccCCCceeEEeecCCc-EEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCc---
Q 036510 161 TAPGALVGSGFLDPVQKLCSGGCDNT-VKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGK--- 236 (288)
Q Consensus 161 ~~~~~~~~~~~~~~~~~l~s~~~d~~-i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~--- 236 (288)
. ++|+.||.... -..+.... ..+..-+.+.+-..+ ..++...|+.
T Consensus 159 h--------------~LLlVgG~~~~~~~~s~a~~--~GLtaWRiL~~~Pyy---------------k~v~~~~~~~~~~ 207 (282)
T PF15492_consen 159 H--------------RLLLVGGCEQNQDGMSKASS--CGLTAWRILSDSPYY---------------KQVTSSEDDITAS 207 (282)
T ss_pred C--------------CEEEEeccCCCCCccccccc--cCceEEEEcCCCCcE---------------EEccccCcccccc
Confidence 6 55555544322 00000000 000111111111111 1222222221
Q ss_pred ---EEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510 237 ---VIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 237 ---i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~ 287 (288)
-.+|.+-.. ............|..+..||||+.||+...+|+|.||++
T Consensus 208 ~~~~~~~~~~~~---~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~i 258 (282)
T PF15492_consen 208 SKRRGLLRIPSF---KFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEI 258 (282)
T ss_pred ccccceeeccce---eeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEec
Confidence 112221100 000001123467999999999999999999999999985
No 279
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.66 E-value=5.1e-06 Score=67.29 Aligned_cols=151 Identities=15% Similarity=0.066 Sum_probs=106.2
Q ss_pred EEEeeCCCcEEEEEeCCCCceeeEEEecccc--CeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCC
Q 036510 26 LATASSDYSIKIIGVGNNTSQHLAKLSGHKG--AVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKS 103 (288)
Q Consensus 26 l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~ 103 (288)
+.-++.|.++++.+++.... ... -|.. .+..+.++++ +..+++.+....|-.|.+.+..++........-.+
T Consensus 131 ~~i~sndht~k~~~~~~~s~--~~~--~h~~~~~~ns~~~snd--~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D 204 (344)
T KOG4532|consen 131 LNIASNDHTGKTMVVSGDSN--KFA--VHNQNLTQNSLHYSND--PSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSD 204 (344)
T ss_pred eeeccCCcceeEEEEecCcc--cce--eeccccceeeeEEcCC--CceEEEecCCCcceEEEeCCccceeeeeEecccCC
Confidence 55688899999988864321 111 1333 3788888865 88999999999999999877666544433444455
Q ss_pred ceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeE--EeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEe
Q 036510 104 SVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTS--RIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSG 181 (288)
Q Consensus 104 ~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~--~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~ 181 (288)
.-.+.+|+.. ..++|++.+||++.|||+|.....+.. .....|++.+..+.|+|-+.. .+|.-.
T Consensus 205 ~gF~~S~s~~--~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~l------------DLLf~s 270 (344)
T KOG4532|consen 205 HGFYNSFSEN--DLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLL------------DLLFIS 270 (344)
T ss_pred CceeeeeccC--cceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcc------------eEEEEe
Confidence 6678888865 567999999999999999986543322 122358889999999985532 344444
Q ss_pred ecCCcEEEEEEeCCc
Q 036510 182 GCDNTVKVWKLYNGI 196 (288)
Q Consensus 182 ~~d~~i~iwd~~~~~ 196 (288)
..-+.+.+-|+++..
T Consensus 271 Ehfs~~hv~D~R~~~ 285 (344)
T KOG4532|consen 271 EHFSRVHVVDTRNYV 285 (344)
T ss_pred cCcceEEEEEcccCc
Confidence 445678899998864
No 280
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.65 E-value=3.8e-06 Score=74.19 Aligned_cols=241 Identities=16% Similarity=0.223 Sum_probs=142.9
Q ss_pred ceEEEEEcCCCCEEEE-----eeCC-----CcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEE
Q 036510 13 TVHDVAMDYYGKRLAT-----ASSD-----YSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVI 82 (288)
Q Consensus 13 ~v~~~~~s~~g~~l~s-----~~~d-----~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~ 82 (288)
.++.+.|+|.|++|.+ --.+ ..+++|++.. +.....+......-|.+.|+.+ +.|+.==..+.+.
T Consensus 75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet--~~~~s~~q~k~Q~~W~~qfs~d---Esl~arlv~nev~ 149 (566)
T KOG2315|consen 75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVET--GVQRSQIQKKMQNGWVPQFSID---ESLAARLVSNEVQ 149 (566)
T ss_pred eeeeeeecccccccccccccccccCCCCCCCceeeeeecc--ceehhheehhhhcCcccccccc---hhhhhhhhcceEE
Confidence 6678889999988854 1122 3466888754 3334344443444488999864 2333333347899
Q ss_pred EeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEE-----EEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEe
Q 036510 83 IWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLA-----CGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSW 157 (288)
Q Consensus 83 iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~-----sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~ 157 (288)
+|+..+.... . -+.|...|+.+.++|.+....+| .+|.=..++||........+......-....-..+.|
T Consensus 150 f~~~~~f~~~--~--~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~W 225 (566)
T KOG2315|consen 150 FYDLGSFKTI--Q--HKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKW 225 (566)
T ss_pred EEecCCccce--e--eeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEe
Confidence 9998764321 1 23467889999999974333333 2344457888876533222221111112223445778
Q ss_pred CCCCCCCceecccccCCCceeEEeecCC---------cEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEE
Q 036510 158 APSTAPGALVGSGFLDPVQKLCSGGCDN---------TVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTI 228 (288)
Q Consensus 158 ~p~~~~~~~~~~~~~~~~~~l~s~~~d~---------~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l 228 (288)
++-+.... +|++.--|+ ++.+.++... .+.-.+ ...++|.+|.|+|++.. =-+
T Consensus 226 N~~gt~LL-----------vLastdVDktn~SYYGEq~Lyll~t~g~----s~~V~L-~k~GPVhdv~W~~s~~E--F~V 287 (566)
T KOG2315|consen 226 NKLGTALL-----------VLASTDVDKTNASYYGEQTLYLLATQGE----SVSVPL-LKEGPVHDVTWSPSGRE--FAV 287 (566)
T ss_pred ccCCceEE-----------EEEEEeecCCCccccccceEEEEEecCc----eEEEec-CCCCCceEEEECCCCCE--EEE
Confidence 87663111 122333333 5677666521 222222 23568999999998521 113
Q ss_pred EEEeCCCcEEEEEeecCCCcccceEeecc-ccCeEEEEeecCCCEEEEEeCC---CcEEEeEc
Q 036510 229 ASASEDGKVIIWTVAREGDQWEGKVLHDF-KTPVYRVSWSLTGNILAVADGN---NNVTLWEE 287 (288)
Q Consensus 229 ~s~s~D~~i~iw~~~~~~~~~~~~~~~~~-~~~i~~~~~spdg~~l~s~~~d---~~v~~w~~ 287 (288)
+-|=.-..+.|+|++ +.+++.+ .++=+.+-|||.|++|+.++-+ |.+-|||+
T Consensus 288 vyGfMPAkvtifnlr-------~~~v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv 343 (566)
T KOG2315|consen 288 VYGFMPAKVTIFNLR-------GKPVFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDV 343 (566)
T ss_pred EEecccceEEEEcCC-------CCEeEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEec
Confidence 334457789999876 2455555 3577889999999999999864 78999996
No 281
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.62 E-value=0.00028 Score=61.27 Aligned_cols=237 Identities=11% Similarity=0.092 Sum_probs=118.7
Q ss_pred EcCCCCEEEEeeC----------CCcEEEEEeCCCCceeeEEEecccc-------CeEEEEecCCCCCCEEEEee-C-CC
Q 036510 19 MDYYGKRLATASS----------DYSIKIIGVGNNTSQHLAKLSGHKG-------AVWEVAWAHPKFGSILASCS-F-DG 79 (288)
Q Consensus 19 ~s~~g~~l~s~~~----------d~~i~lwd~~~~~~~~~~~~~~h~~-------~v~~~~~~~~~~~~~l~s~s-~-d~ 79 (288)
++|||+.|+.+.. +..|.+||... .+.+..+.--.. .-..++++++ |++|...- . +.
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t--~~~~~~i~~p~~p~~~~~~~~~~~~ls~d--gk~l~V~n~~p~~ 128 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQT--HLPIADIELPEGPRFLVGTYPWMTSLTPD--NKTLLFYQFSPSP 128 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECcc--CcEEeEEccCCCchhhccCccceEEECCC--CCEEEEecCCCCC
Confidence 8999988776665 78999999853 344544432111 1235677654 77666444 3 78
Q ss_pred cEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCC--CCee-EEE
Q 036510 80 TVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHP--VGVT-SVS 156 (288)
Q Consensus 80 ~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~--~~v~-~i~ 156 (288)
.|.+.|+.+.+ ....+.-. +...-...++. ... .-+.||......+...+........-.+. ..+. .-.
T Consensus 129 ~V~VvD~~~~k---vv~ei~vp-~~~~vy~t~e~--~~~--~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~ 200 (352)
T TIGR02658 129 AVGVVDLEGKA---FVRMMDVP-DCYHIFPTAND--TFF--MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPA 200 (352)
T ss_pred EEEEEECCCCc---EEEEEeCC-CCcEEEEecCC--ccE--EEeecCceEEEEecCCCceEEeeeeeecCCccccccCCc
Confidence 99999987654 22223211 11111111111 221 12345555444443322211000000000 0000 001
Q ss_pred eCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceee-eeeeccc-------cCCcceEEEEecCCCCCCCcEE
Q 036510 157 WAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKM-DCFPALQ-------MHTDWVRDVAWAPNLGLPKSTI 228 (288)
Q Consensus 157 ~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~-------~h~~~V~~v~~sp~~~~~~~~l 228 (288)
|.+. +++.+....+ |+|.+.|+....... +....+. -......-++++|++ ...+
T Consensus 201 ~~~~-------------dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg---~~ly 263 (352)
T TIGR02658 201 YSNK-------------SGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRAR---DRIY 263 (352)
T ss_pred eEcC-------------CCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCC---CEEE
Confidence 1120 1244444333 999999964431111 1111110 122233448999986 3445
Q ss_pred EEEe-CC--------CcEEEEEeecCCCcccceEeeccccCeEEEEeecCCC-EEEEEe-CCCcEEEeEcC
Q 036510 229 ASAS-ED--------GKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGN-ILAVAD-GNNNVTLWEEA 288 (288)
Q Consensus 229 ~s~s-~D--------~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~-~l~s~~-~d~~v~~w~~~ 288 (288)
+... .. +.|.++|....+. ...+ ..+..+..++++|||+ +|++.. .++.|.+.|.+
T Consensus 264 V~~~~~~~~thk~~~~~V~ViD~~t~kv---i~~i-~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~ 330 (352)
T TIGR02658 264 LLADQRAKWTHKTASRFLFVVDAKTGKR---LRKI-ELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAE 330 (352)
T ss_pred EEecCCccccccCCCCEEEEEECCCCeE---EEEE-eCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECc
Confidence 5332 12 5788888765321 1111 2346789999999999 887776 57889999853
No 282
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=4.7e-06 Score=70.98 Aligned_cols=85 Identities=18% Similarity=0.331 Sum_probs=71.2
Q ss_pred CCCccccccccceEEEEEcCCCC-EEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCc
Q 036510 2 PPQKIETGHEDTVHDVAMDYYGK-RLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGT 80 (288)
Q Consensus 2 ~~~~~~~~h~~~v~~~~~s~~g~-~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~ 80 (288)
.+..++.+|...|.+++|||..+ +|..++.+.+|+|.|+.. ...+.++..| ..+|+++|..+ +.+++..|-..|.
T Consensus 184 kssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet--~~~vssy~a~-~~~wSC~wDld-e~h~IYaGl~nG~ 259 (463)
T KOG1645|consen 184 KSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLET--SCVVSSYIAY-NQIWSCCWDLD-ERHVIYAGLQNGM 259 (463)
T ss_pred chhhcccccchhhhhhccCccccceeeeeccCceEEEEeccc--ceeeeheecc-CCceeeeeccC-CcceeEEeccCce
Confidence 34457788999999999999876 789999999999999853 3556777777 78999999876 4788999999999
Q ss_pred EEEeecCCCC
Q 036510 81 VIIWKEGNSN 90 (288)
Q Consensus 81 v~iwd~~~~~ 90 (288)
|.|+|++...
T Consensus 260 VlvyD~R~~~ 269 (463)
T KOG1645|consen 260 VLVYDMRQPE 269 (463)
T ss_pred EEEEEccCCC
Confidence 9999998754
No 283
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.60 E-value=0.00025 Score=59.91 Aligned_cols=233 Identities=15% Similarity=0.132 Sum_probs=133.0
Q ss_pred CCcEEEEEeCCCCcee-eEEEeccccCeEEEEecCCCCCCEEEEeeC---CCcEEEeecCCC-CceEEeEEeecCCCcee
Q 036510 32 DYSIKIIGVGNNTSQH-LAKLSGHKGAVWEVAWAHPKFGSILASCSF---DGTVIIWKEGNS-NEWIKDHVFEDHKSSVN 106 (288)
Q Consensus 32 d~~i~lwd~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~---d~~v~iwd~~~~-~~~~~~~~~~~h~~~v~ 106 (288)
+.-|.+|+++..+++. ...+-.+.+..+-++|+++ .+.|.++-. +|.|..+.+... +.............+-.
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~--~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~ 92 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPD--QRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPC 92 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCC--CCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCe
Confidence 4668999887444332 2233456777888999864 556665533 677887776532 21111111111122336
Q ss_pred EEEeccCCCCeEEEEE-eCCCcEEEEeecCCCCeeeEEeeccCCCC----------eeEEEeCCCCCCCceecccccCCC
Q 036510 107 SIDWAPHELGLCLACG-SSDGNISVFTARADGGWDTSRIDQAHPVG----------VTSVSWAPSTAPGALVGSGFLDPV 175 (288)
Q Consensus 107 ~l~~~p~~~~~~l~sg-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~----------v~~i~~~p~~~~~~~~~~~~~~~~ 175 (288)
-++++++ +++++++ -..|.|.++-++..+..........|... +....+.|++
T Consensus 93 yvsvd~~--g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~-------------- 156 (346)
T COG2706 93 YVSVDED--GRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDG-------------- 156 (346)
T ss_pred EEEECCC--CCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCC--------------
Confidence 6777777 5555555 45579999999776544333222233333 6677788876
Q ss_pred ceeEEe-ecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCC-cccceE
Q 036510 176 QKLCSG-GCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGD-QWEGKV 253 (288)
Q Consensus 176 ~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~-~~~~~~ 253 (288)
++|++. -.-..|.+|++..+.-.......+....++ +-+.|+|+.+. -|+ ..--+++|-+|....... ..+...
T Consensus 157 ~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GP-RHi~FHpn~k~--aY~-v~EL~stV~v~~y~~~~g~~~~lQ~ 232 (346)
T COG2706 157 RYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGP-RHIVFHPNGKY--AYL-VNELNSTVDVLEYNPAVGKFEELQT 232 (346)
T ss_pred CEEEEeecCCceEEEEEcccCccccccccccCCCCCc-ceEEEcCCCcE--EEE-EeccCCEEEEEEEcCCCceEEEeee
Confidence 555544 223358899998763221112222322333 78999998632 122 233489999999876422 112222
Q ss_pred ee----cc--ccCeEEEEeecCCCEEEEEeC-CCcEEEeE
Q 036510 254 LH----DF--KTPVYRVSWSLTGNILAVADG-NNNVTLWE 286 (288)
Q Consensus 254 ~~----~~--~~~i~~~~~spdg~~l~s~~~-d~~v~~w~ 286 (288)
+. ++ ..+.-.+..+|||++|.++.. .+.|-++.
T Consensus 233 i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~ 272 (346)
T COG2706 233 IDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFS 272 (346)
T ss_pred eccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEE
Confidence 21 22 246778999999999988742 23555554
No 284
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.59 E-value=0.00012 Score=63.98 Aligned_cols=124 Identities=16% Similarity=0.179 Sum_probs=85.1
Q ss_pred CCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCC-cEEEeecCCCCceEEeEEeec
Q 036510 22 YGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDG-TVIIWKEGNSNEWIKDHVFED 100 (288)
Q Consensus 22 ~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~-~v~iwd~~~~~~~~~~~~~~~ 100 (288)
+|.+++..|.. ...|.+...+ ..+ .-+|.+.|....+..+ ++-++.|..|| .+-|+|.+.+. ++.+..
T Consensus 331 ~Gd~ia~VSRG-kaFi~~~~~~--~~i--qv~~~~~VrY~r~~~~--~e~~vigt~dgD~l~iyd~~~~e----~kr~e~ 399 (668)
T COG4946 331 NGDYIALVSRG-KAFIMRPWDG--YSI--QVGKKGGVRYRRIQVD--PEGDVIGTNDGDKLGIYDKDGGE----VKRIEK 399 (668)
T ss_pred CCcEEEEEecC-cEEEECCCCC--eeE--EcCCCCceEEEEEccC--CcceEEeccCCceEEEEecCCce----EEEeeC
Confidence 57887777754 4455543221 111 2367888887777643 56888999999 89999987653 344555
Q ss_pred CCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCC
Q 036510 101 HKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPST 161 (288)
Q Consensus 101 h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~ 161 (288)
.-+.|.++..+|+ ++.++.+..-..|.++|+.++.. ....+....-|+.+.|+|+.
T Consensus 400 ~lg~I~av~vs~d--GK~~vvaNdr~el~vididngnv---~~idkS~~~lItdf~~~~ns 455 (668)
T COG4946 400 DLGNIEAVKVSPD--GKKVVVANDRFELWVIDIDNGNV---RLIDKSEYGLITDFDWHPNS 455 (668)
T ss_pred CccceEEEEEcCC--CcEEEEEcCceEEEEEEecCCCe---eEecccccceeEEEEEcCCc
Confidence 6678999999998 66667676556777778876542 33445556679999999987
No 285
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.57 E-value=2.1e-07 Score=77.54 Aligned_cols=123 Identities=10% Similarity=0.044 Sum_probs=93.4
Q ss_pred cceEEEEEcCCCCEEEEeeCCCcEEEEEeCCC---CceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCC
Q 036510 12 DTVHDVAMDYYGKRLATASSDYSIKIIGVGNN---TSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGN 88 (288)
Q Consensus 12 ~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~---~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~ 88 (288)
..|.+++|...++++..|+..|.|...|+... .+.+...+ -|..+|+++..-. .++.+|.+.+++|+|++||.+.
T Consensus 253 sDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq-~s~q~LmaS~M~gkikLyD~R~ 330 (425)
T KOG2695|consen 253 SDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQ-FSQQKLMASDMTGKIKLYDLRA 330 (425)
T ss_pred hhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhc-cccceEeeccCcCceeEeeehh
Confidence 46667778877899999999999999998521 22333333 3888999887543 2478999999999999999986
Q ss_pred CCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCC
Q 036510 89 SNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARAD 136 (288)
Q Consensus 89 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~ 136 (288)
.++..-+.++.+|.+.-.-+.++-++....++++++|-+.|||.++.+
T Consensus 331 ~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~g 378 (425)
T KOG2695|consen 331 TKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSG 378 (425)
T ss_pred hhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccC
Confidence 554334567788887766677766655667788999999999999865
No 286
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.55 E-value=2.9e-06 Score=68.38 Aligned_cols=116 Identities=21% Similarity=0.373 Sum_probs=80.4
Q ss_pred eeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEE
Q 036510 152 VTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASA 231 (288)
Q Consensus 152 v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~ 231 (288)
|.++.-.|.. .++++.|+.|+.+-+||++... -....+..|+.+++.|-|+|.. +..|.++
T Consensus 182 v~~l~~hp~q-------------q~~v~cgt~dg~~~l~d~rn~~---~p~S~l~ahk~~i~eV~FHpk~---p~~Lft~ 242 (319)
T KOG4714|consen 182 VTALCSHPAQ-------------QHLVCCGTDDGIVGLWDARNVA---MPVSLLKAHKAEIWEVHFHPKN---PEHLFTC 242 (319)
T ss_pred chhhhCCccc-------------ccEEEEecCCCeEEEEEccccc---chHHHHHHhhhhhhheeccCCC---chheeEe
Confidence 6666666654 2789999999999999998752 2344678999999999999964 5678899
Q ss_pred eCCCcEEEEEeecCCCc----------c-cceEee------c-cccCeEEE-EeecCCCEEEEEeCCCcEEEeE
Q 036510 232 SEDGKVIIWTVAREGDQ----------W-EGKVLH------D-FKTPVYRV-SWSLTGNILAVADGNNNVTLWE 286 (288)
Q Consensus 232 s~D~~i~iw~~~~~~~~----------~-~~~~~~------~-~~~~i~~~-~~spdg~~l~s~~~d~~v~~w~ 286 (288)
+.||.+..||.+..... | +..+++ . ..+...++ .|.--|..|+.|+.-+.|.|.+
T Consensus 243 sedGslw~wdas~~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 243 SEDGSLWHWDASTTFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred cCCCcEEEEcCCCceEEecCccccccccccCCcccceEeeeccccccceeeeeeeccCceEEeccccceEEEec
Confidence 99999999998732100 0 000000 0 01112222 5556799999998888888875
No 287
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.54 E-value=0.00016 Score=70.77 Aligned_cols=243 Identities=19% Similarity=0.314 Sum_probs=143.9
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCcEEEE----EeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeec
Q 036510 11 EDTVHDVAMDYYGKRLATASSDYSIKII----GVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE 86 (288)
Q Consensus 11 ~~~v~~~~~s~~g~~l~s~~~d~~i~lw----d~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~ 86 (288)
.+.|.++.+-++...|+.+-.+|.|-+. +......+.+..+ ...|.+.+|||| +++|+....++++.+...
T Consensus 75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~v---d~GI~a~~WSPD--~Ella~vT~~~~l~~mt~ 149 (928)
T PF04762_consen 75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSV---DSGILAASWSPD--EELLALVTGEGNLLLMTR 149 (928)
T ss_pred CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEE---cCcEEEEEECCC--cCEEEEEeCCCEEEEEec
Confidence 4678888888888788888888988888 4433334445544 567999999976 788988888888887642
Q ss_pred C------------CCCc-------eEEe-EEeec------------------------CCCceeEEEeccCCCCeEEEEE
Q 036510 87 G------------NSNE-------WIKD-HVFED------------------------HKSSVNSIDWAPHELGLCLACG 122 (288)
Q Consensus 87 ~------------~~~~-------~~~~-~~~~~------------------------h~~~v~~l~~~p~~~~~~l~sg 122 (288)
. ..+. |.+. ..+.+ +.+.-..++|-.| |.++|+.
T Consensus 150 ~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGD--G~yFAVs 227 (928)
T PF04762_consen 150 DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGD--GEYFAVS 227 (928)
T ss_pred cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCC--CcEEEEE
Confidence 0 0000 0000 00000 2223456778777 6677766
Q ss_pred eC---C---CcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeec--C-CcEEEEEEe
Q 036510 123 SS---D---GNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGC--D-NTVKVWKLY 193 (288)
Q Consensus 123 ~~---d---~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~--d-~~i~iwd~~ 193 (288)
+. . +.|++|+=. +.++. ..+.-.+--.+++|.|.+ +++++... + ..|.+|. +
T Consensus 228 s~~~~~~~~R~iRVy~Re--G~L~s--tSE~v~gLe~~l~WrPsG--------------~lIA~~q~~~~~~~VvFfE-r 288 (928)
T PF04762_consen 228 SVEPETGSRRVIRVYSRE--GELQS--TSEPVDGLEGALSWRPSG--------------NLIASSQRLPDRHDVVFFE-R 288 (928)
T ss_pred EEEcCCCceeEEEEECCC--ceEEe--ccccCCCccCCccCCCCC--------------CEEEEEEEcCCCcEEEEEe-c
Confidence 53 2 478888632 22221 222223334578999987 66776543 2 2344443 5
Q ss_pred CCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccc-eEe-eccccCeEEEEeecC-C
Q 036510 194 NGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEG-KVL-HDFKTPVYRVSWSLT-G 270 (288)
Q Consensus 194 ~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~-~~~-~~~~~~i~~~~~spd-g 270 (288)
+|.+.-+..-.+......|..+.|++++ ..||..-.|. |.+|..... .|-. ..+ ..-...+..+.|+|. .
T Consensus 289 NGLrhgeF~l~~~~~~~~v~~l~Wn~ds----~iLAv~~~~~-vqLWt~~NY--HWYLKqei~~~~~~~~~~~~Wdpe~p 361 (928)
T PF04762_consen 289 NGLRHGEFTLRFDPEEEKVIELAWNSDS----EILAVWLEDR-VQLWTRSNY--HWYLKQEIRFSSSESVNFVKWDPEKP 361 (928)
T ss_pred CCcEeeeEecCCCCCCceeeEEEECCCC----CEEEEEecCC-ceEEEeeCC--EEEEEEEEEccCCCCCCceEECCCCC
Confidence 5543222211222345579999999985 5666666554 999986542 2221 111 111234555999995 4
Q ss_pred CEEEEEeCCCcEEEeE
Q 036510 271 NILAVADGNNNVTLWE 286 (288)
Q Consensus 271 ~~l~s~~~d~~v~~w~ 286 (288)
..|.....++.+..++
T Consensus 362 ~~L~v~t~~g~~~~~~ 377 (928)
T PF04762_consen 362 LRLHVLTSNGQYEIYD 377 (928)
T ss_pred CEEEEEecCCcEEEEE
Confidence 5688888878876665
No 288
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.52 E-value=8.9e-05 Score=60.81 Aligned_cols=192 Identities=17% Similarity=0.203 Sum_probs=104.4
Q ss_pred eEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEec-------cccCeEEEEecCCC-C---CCEEEEeeCCCcEE
Q 036510 14 VHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSG-------HKGAVWEVAWAHPK-F---GSILASCSFDGTVI 82 (288)
Q Consensus 14 v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~-------h~~~v~~~~~~~~~-~---~~~l~s~s~d~~v~ 82 (288)
-..++||||+.+||.+...|+|+++|+-+. .+..+.. -..+|-++.|.... + ...|+.-..+|.++
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~---~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~ 122 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGS---ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLR 122 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEecccc---eeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceee
Confidence 356899999999999999999999998532 2333322 22455666665431 1 12455556777777
Q ss_pred EeecCC--CCceEEeEEee---cCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEe
Q 036510 83 IWKEGN--SNEWIKDHVFE---DHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSW 157 (288)
Q Consensus 83 iwd~~~--~~~~~~~~~~~---~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~ 157 (288)
-+-+.. ...+...+.+. .+...|+++.++|.. ..+++.|.....-...... ...+..++++.+-
T Consensus 123 Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h-~LLlVgG~~~~~~~~s~a~-~~GLtaWRiL~~~--------- 191 (282)
T PF15492_consen 123 SYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH-RLLLVGGCEQNQDGMSKAS-SCGLTAWRILSDS--------- 191 (282)
T ss_pred eEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC-CEEEEeccCCCCCcccccc-ccCceEEEEcCCC---------
Confidence 765422 23333444443 246689999999974 3444444433321111000 0011122222111
Q ss_pred CCCCCCCceecccccCCCceeEEeecCC------cEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEE
Q 036510 158 APSTAPGALVGSGFLDPVQKLCSGGCDN------TVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASA 231 (288)
Q Consensus 158 ~p~~~~~~~~~~~~~~~~~~l~s~~~d~------~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~ 231 (288)
|.. ..++..+|+ +-.+|.+.+. +.......-.+.|..+..|||+ +.||+.
T Consensus 192 -Pyy---------------k~v~~~~~~~~~~~~~~~~~~~~~~----~~fs~~~~~~d~i~kmSlSPdg----~~La~i 247 (282)
T PF15492_consen 192 -PYY---------------KQVTSSEDDITASSKRRGLLRIPSF----KFFSRQGQEQDGIFKMSLSPDG----SLLACI 247 (282)
T ss_pred -CcE---------------EEccccCccccccccccceeeccce----eeeeccccCCCceEEEEECCCC----CEEEEE
Confidence 111 111211111 1223333221 1111112345679999999984 789999
Q ss_pred eCCCcEEEEEee
Q 036510 232 SEDGKVIIWTVA 243 (288)
Q Consensus 232 s~D~~i~iw~~~ 243 (288)
..+|.|.+|++=
T Consensus 248 h~sG~lsLW~iP 259 (282)
T PF15492_consen 248 HFSGSLSLWEIP 259 (282)
T ss_pred EcCCeEEEEecC
Confidence 999999999874
No 289
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.50 E-value=4e-05 Score=68.01 Aligned_cols=114 Identities=20% Similarity=0.360 Sum_probs=68.8
Q ss_pred CeeEEEeCCCCCCCceecccccCCCceeE--Eeec-CCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcE
Q 036510 151 GVTSVSWAPSTAPGALVGSGFLDPVQKLC--SGGC-DNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKST 227 (288)
Q Consensus 151 ~v~~i~~~p~~~~~~~~~~~~~~~~~~l~--s~~~-d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~ 227 (288)
.|...+|.|.+ +.++ +|.. ..++.+|-+++......++..+.. ...+.|.|+|.+ +.
T Consensus 447 ~vi~FaWEP~g--------------dkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPkG----~f 506 (698)
T KOG2314|consen 447 SVIAFAWEPHG--------------DKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSPKG----RF 506 (698)
T ss_pred heeeeeeccCC--------------CeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEEEcCCC----cE
Confidence 46667787776 3333 3322 346888988753323344444433 346899999974 55
Q ss_pred EEEE---eCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeC------CCcEEEeEc
Q 036510 228 IASA---SEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADG------NNNVTLWEE 287 (288)
Q Consensus 228 l~s~---s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~------d~~v~~w~~ 287 (288)
+|.+ |..+.+.++|.....-. ...+.-.-..+.+.|.|.|+|++++++ |.--++|++
T Consensus 507 vvva~l~s~~g~l~F~D~~~a~~k---~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tf 572 (698)
T KOG2314|consen 507 VVVAALVSRRGDLEFYDTDYADLK---DTASPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTF 572 (698)
T ss_pred EEEEEecccccceEEEecchhhhh---hccCccccccccceECCCCCEEEEeeehhhhccccceEEEEe
Confidence 6555 45788999998742110 111111123567899999999999975 444566653
No 290
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.48 E-value=0.0001 Score=73.29 Aligned_cols=203 Identities=13% Similarity=0.117 Sum_probs=120.3
Q ss_pred eEEEEEcCCCCEEEEee-CCCcEEEEEeCCCCceeeEEEec--c---------------ccCeEEEEecCCCCCCEEEEe
Q 036510 14 VHDVAMDYYGKRLATAS-SDYSIKIIGVGNNTSQHLAKLSG--H---------------KGAVWEVAWAHPKFGSILASC 75 (288)
Q Consensus 14 v~~~~~s~~g~~l~s~~-~d~~i~lwd~~~~~~~~~~~~~~--h---------------~~~v~~~~~~~~~~~~~l~s~ 75 (288)
-.+++++++++.|..+. ..+.|+.+|..... +.++.+ . -..-+.+++++. ++.++++.
T Consensus 626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~---V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~-~g~LyVad 701 (1057)
T PLN02919 626 PQGLAYNAKKNLLYVADTENHALREIDFVNET---VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPV-NEKVYIAM 701 (1057)
T ss_pred CcEEEEeCCCCEEEEEeCCCceEEEEecCCCE---EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecC-CCeEEEEE
Confidence 46788888877654444 45678888874432 222211 0 012357888753 47788898
Q ss_pred eCCCcEEEeecCCCCceEEeEEeec---------------CCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCee
Q 036510 76 SFDGTVIIWKEGNSNEWIKDHVFED---------------HKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWD 140 (288)
Q Consensus 76 s~d~~v~iwd~~~~~~~~~~~~~~~---------------h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~ 140 (288)
+.++.|++||..++.. ..+.+ .-.....++++|++ ..++++-+.++.|++||+..+...
T Consensus 702 ~~~~~I~v~d~~~g~v----~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG-~~LYVADs~n~~Irv~D~~tg~~~- 775 (1057)
T PLN02919 702 AGQHQIWEYNISDGVT----RVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDL-KELYIADSESSSIRALDLKTGGSR- 775 (1057)
T ss_pred CCCCeEEEEECCCCeE----EEEecCCccccCCCCccccccccCccEEEEeCCC-CEEEEEECCCCeEEEEECCCCcEE-
Confidence 9999999999865431 11111 01234568899984 345666777899999998754311
Q ss_pred eEEeec----------c-CC--------CCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeee
Q 036510 141 TSRIDQ----------A-HP--------VGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDC 201 (288)
Q Consensus 141 ~~~~~~----------~-~~--------~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 201 (288)
...... + .. ..-..+.++|+ ++++++-+.++.|++||..++... ..
T Consensus 776 ~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~d--------------G~LYVADs~N~rIrviD~~tg~v~-ti 840 (1057)
T PLN02919 776 LLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKD--------------GQIYVADSYNHKIKKLDPATKRVT-TL 840 (1057)
T ss_pred EEEecccccCcccccccCCCCchhhhhccCCceeeEeCC--------------CcEEEEECCCCEEEEEECCCCeEE-EE
Confidence 100000 0 00 00123333333 367888888999999998765211 11
Q ss_pred ee----------ccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecC
Q 036510 202 FP----------ALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVARE 245 (288)
Q Consensus 202 ~~----------~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~ 245 (288)
.. ...+.-.....|+++|++ +.+++-+.++.|++||++..
T Consensus 841 aG~G~~G~~dG~~~~a~l~~P~GIavd~dG----~lyVaDt~Nn~Irvid~~~~ 890 (1057)
T PLN02919 841 AGTGKAGFKDGKALKAQLSEPAGLALGENG----RLFVADTNNSLIRYLDLNKG 890 (1057)
T ss_pred eccCCcCCCCCcccccccCCceEEEEeCCC----CEEEEECCCCEEEEEECCCC
Confidence 00 011122245678998874 67888889999999998754
No 291
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.44 E-value=2.1e-05 Score=71.78 Aligned_cols=254 Identities=15% Similarity=0.173 Sum_probs=153.3
Q ss_pred CCccccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEE
Q 036510 3 PQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVI 82 (288)
Q Consensus 3 ~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~ 82 (288)
..+.+.||...|.-+.|+...+.|-++..+|-|.+|-+-.+....-..-.-.++-|.+++|.. +|..+...-.||.|.
T Consensus 63 mNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~--dG~kIcIvYeDGavI 140 (1189)
T KOG2041|consen 63 MNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL--DGTKICIVYEDGAVI 140 (1189)
T ss_pred hhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcC--CCcEEEEEEccCCEE
Confidence 345678999999999999988999999999999999875443322122233466788999975 489999999999998
Q ss_pred EeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCC----eee-EE---eeccCCCCeeE
Q 036510 83 IWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGG----WDT-SR---IDQAHPVGVTS 154 (288)
Q Consensus 83 iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~----~~~-~~---~~~~~~~~v~~ 154 (288)
+=.+....-|. +.+++ .....+-|++| ..+++.+-..|.+.+||.+.+-. .+. +. .....+-.+..
T Consensus 141 VGsvdGNRIwg--KeLkg--~~l~hv~ws~D--~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~ 214 (1189)
T KOG2041|consen 141 VGSVDGNRIWG--KELKG--QLLAHVLWSED--LEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAE 214 (1189)
T ss_pred EEeeccceecc--hhcch--heccceeeccc--HHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccc
Confidence 86553222111 12222 12346789988 44555666678899998753210 000 00 11112223555
Q ss_pred EEeCCCCCCCceecccccC-CCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeC
Q 036510 155 VSWAPSTAPGALVGSGFLD-PVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASE 233 (288)
Q Consensus 155 i~~~p~~~~~~~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~ 233 (288)
+.|.... . ..+. +--.|+.+=..|.+.|-.-.+.+. +.+-.-.-.|....|++++ ..||.++.
T Consensus 215 i~w~~g~-~------~~v~pdrP~lavcy~nGr~QiMR~eND~~-----Pvv~dtgm~~vgakWnh~G----~vLAvcG~ 278 (1189)
T KOG2041|consen 215 IEWNTGP-Y------QPVPPDRPRLAVCYANGRMQIMRSENDPE-----PVVVDTGMKIVGAKWNHNG----AVLAVCGN 278 (1189)
T ss_pred eeeccCc-c------ccCCCCCCEEEEEEcCceehhhhhcCCCC-----CeEEecccEeecceecCCC----cEEEEccC
Confidence 6664221 0 0111 112467777777777654433221 1111112457888999984 67877776
Q ss_pred CC---------cEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEe
Q 036510 234 DG---------KVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLW 285 (288)
Q Consensus 234 D~---------~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w 285 (288)
|. .|.++.+.- . -...++..++.|++++|--.|-.+|.+ .|+.|.+=
T Consensus 279 ~~da~~~~d~n~v~Fysp~G---~-i~gtlkvpg~~It~lsWEg~gLriA~A-vdsfiyfa 334 (1189)
T KOG2041|consen 279 DSDADEPTDSNKVHFYSPYG---H-IVGTLKVPGSCITGLSWEGTGLRIAIA-VDSFIYFA 334 (1189)
T ss_pred cccccCccccceEEEeccch---h-heEEEecCCceeeeeEEcCCceEEEEE-ecceEEEE
Confidence 53 455664431 1 123445566789999998888888776 56666553
No 292
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.43 E-value=1.9e-05 Score=72.73 Aligned_cols=189 Identities=19% Similarity=0.227 Sum_probs=114.3
Q ss_pred cceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCc
Q 036510 12 DTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNE 91 (288)
Q Consensus 12 ~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~ 91 (288)
+.+++.+++ ++.|+=|..+|.|++.+.+... .+.-.|... +.+|.+++|||+||+|.|-.+.+...
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~----~~~~~~s~~--------~~~Gey~asCS~DGkv~I~sl~~~~~ 105 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGNP----KTNFDHSSS--------ILEGEYVASCSDDGKVVIGSLFTDDE 105 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecCCcc----ccccccccc--------ccCCceEEEecCCCcEEEeeccCCcc
Confidence 444444444 6778889999999998875431 333344433 34699999999999999988766543
Q ss_pred eEEeEEeecCCCceeEEEeccC---CCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceec
Q 036510 92 WIKDHVFEDHKSSVNSIDWAPH---ELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVG 168 (288)
Q Consensus 92 ~~~~~~~~~h~~~v~~l~~~p~---~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~ 168 (288)
. .++ ....++.+++++|+ ...+.+++||.-| +.++.=+--+..... ......+.|.+|.|.-
T Consensus 106 ~---~~~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W~g--------- 170 (846)
T KOG2066|consen 106 I---TQY-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKWRG--------- 170 (846)
T ss_pred c---eeE-ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEEEEecC---------
Confidence 1 222 24568999999998 2345788998888 766632211122221 2344457899999963
Q ss_pred ccccCCCceeEEeecCCcEEEEEEeCCceeeeeeecccc-C-CcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEee
Q 036510 169 SGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQM-H-TDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVA 243 (288)
Q Consensus 169 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-h-~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~ 243 (288)
++++=++.+| |+++|+.++.........-.. . .-.-..+.|.++ .+|| -++.-+|+|..++
T Consensus 171 -------~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~-----~~LV-IGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 171 -------NLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDE-----DRLV-IGWGDSVKICSIK 233 (846)
T ss_pred -------cEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCC-----CeEE-EecCCeEEEEEEe
Confidence 4566555444 999998765321111000000 0 001134566664 3444 4555589999888
No 293
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.36 E-value=2.5e-05 Score=72.99 Aligned_cols=193 Identities=19% Similarity=0.224 Sum_probs=122.0
Q ss_pred CCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCC
Q 036510 23 GKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHK 102 (288)
Q Consensus 23 g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~ 102 (288)
+..+.-|+....+-.+|+... +..+...-....|.=++.. +++|.+|...|+|-+-|..+.. ..+++..|.
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~--~e~r~~~v~a~~v~imR~N----nr~lf~G~t~G~V~LrD~~s~~---~iht~~aHs 217 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTE--KETRTTNVSASGVTIMRYN----NRNLFCGDTRGTVFLRDPNSFE---TIHTFDAHS 217 (1118)
T ss_pred Ccceeecchhhheeeeecccc--eeeeeeeccCCceEEEEec----CcEEEeecccceEEeecCCcCc---eeeeeeccc
Confidence 344555666666666666432 2222222223346666653 6788888888998888775543 567788888
Q ss_pred CceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEee
Q 036510 103 SSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGG 182 (288)
Q Consensus 103 ~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~ 182 (288)
+.|..++.+ +.+|+++|..... + .+ -
T Consensus 218 ~siSDfDv~----GNlLitCG~S~R~--~---------------------------------------------~l---~ 243 (1118)
T KOG1275|consen 218 GSISDFDVQ----GNLLITCGYSMRR--Y---------------------------------------------NL---A 243 (1118)
T ss_pred cceeeeecc----CCeEEEeeccccc--c---------------------------------------------cc---c
Confidence 888877755 3456666532211 0 00 1
Q ss_pred cCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCccc-ceEeeccccCe
Q 036510 183 CDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWE-GKVLHDFKTPV 261 (288)
Q Consensus 183 ~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~-~~~~~~~~~~i 261 (288)
.|..|++||++.= +.+..+..+.++ .=+.|+|.. ...++.+|.-|.+.+-|...-..+.. ...+...++.+
T Consensus 244 ~D~FvkVYDLRmm----ral~PI~~~~~P-~flrf~Psl---~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i 315 (1118)
T KOG1275|consen 244 MDPFVKVYDLRMM----RALSPIQFPYGP-QFLRFHPSL---TTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGI 315 (1118)
T ss_pred ccchhhhhhhhhh----hccCCcccccCc-hhhhhcccc---cceEEEEecccceeeccccccCCCccceeEEccCCCcc
Confidence 3677899998752 223333444443 345888864 56788999999999988433222211 22233334559
Q ss_pred EEEEeecCCCEEEEEeCCCcEEEeE
Q 036510 262 YRVSWSLTGNILAVADGNNNVTLWE 286 (288)
Q Consensus 262 ~~~~~spdg~~l~s~~~d~~v~~w~ 286 (288)
...++|++|+.+|.|..+|.|++|.
T Consensus 316 ~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 316 SAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred eeEEecCCCceEEEecccCcEeeec
Confidence 9999999999999999999999996
No 294
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.32 E-value=0.00013 Score=64.13 Aligned_cols=240 Identities=14% Similarity=0.177 Sum_probs=134.1
Q ss_pred cceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCc-----------
Q 036510 12 DTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGT----------- 80 (288)
Q Consensus 12 ~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~----------- 80 (288)
-++..+++||.|++|++.-.. -|.+|+-... ..+.++. ...|..+.|+|. +.+|++.+.-+.
T Consensus 33 ~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~--~~l~~~~--~~~V~~~~fSP~--~kYL~tw~~~pi~~pe~e~sp~~ 105 (561)
T COG5354 33 WPVAYVSESPLGTYLFSEHAA-GVECWGGPSK--AKLVRFR--HPDVKYLDFSPN--EKYLVTWSREPIIEPEIEISPFT 105 (561)
T ss_pred cchhheeecCcchheehhhcc-ceEEccccch--hheeeee--cCCceecccCcc--cceeeeeccCCccChhhccCCcc
Confidence 456678999999999876554 5788875432 2333333 456899999864 889999775444
Q ss_pred ----EEEeecCCCCceEEeEEeecCCCc--ee-EEEeccCCCCeEEEEEeCCCcEEEEeecCCCCe-eeEEeeccCCCCe
Q 036510 81 ----VIIWKEGNSNEWIKDHVFEDHKSS--VN-SIDWAPHELGLCLACGSSDGNISVFTARADGGW-DTSRIDQAHPVGV 152 (288)
Q Consensus 81 ----v~iwd~~~~~~~~~~~~~~~h~~~--v~-~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~-~~~~~~~~~~~~v 152 (288)
+.+||..++. .+..+.....+ .+ -+.|+-++ .++|-. -...+.|+++ +++.. .+...+ ...++
T Consensus 106 ~~n~~~vwd~~sg~---iv~sf~~~~q~~~~Wp~~k~s~~D--~y~ARv-v~~sl~i~e~-t~n~~~~p~~~l--r~~gi 176 (561)
T COG5354 106 SKNNVFVWDIASGM---IVFSFNGISQPYLGWPVLKFSIDD--KYVARV-VGSSLYIHEI-TDNIEEHPFKNL--RPVGI 176 (561)
T ss_pred ccCceeEEeccCce---eEeeccccCCcccccceeeeeecc--hhhhhh-ccCeEEEEec-CCccccCchhhc--cccce
Confidence 8999987764 34444444444 44 56777663 233322 2346888986 22211 111111 13568
Q ss_pred eEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEE-E
Q 036510 153 TSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIAS-A 231 (288)
Q Consensus 153 ~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s-~ 231 (288)
....|+|.+.-.. .....+. ..+.+.++++|.+-.+.. +. .+++-.-+ =..+.|.+.+ .+|+. .
T Consensus 177 ~dFsisP~~n~~~---la~~tPE----k~~kpa~~~i~sIp~~s~-l~-tk~lfk~~--~~qLkW~~~g----~~ll~l~ 241 (561)
T COG5354 177 LDFSISPEGNHDE---LAYWTPE----KLNKPAMVRILSIPKNSV-LV-TKNLFKVS--GVQLKWQVLG----KYLLVLV 241 (561)
T ss_pred eeEEecCCCCCce---EEEEccc----cCCCCcEEEEEEccCCCe-ee-eeeeEeec--ccEEEEecCC----ceEEEEE
Confidence 8889999752100 0000000 345677888888754311 11 11111000 0234566543 12211 1
Q ss_pred --------e--CCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeC--CCcEEEeE
Q 036510 232 --------S--EDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADG--NNNVTLWE 286 (288)
Q Consensus 232 --------s--~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~--d~~v~~w~ 286 (288)
+ ...++.+++++... .....+..++|...+|+|+++.|++.++ +.++-++|
T Consensus 242 ~t~~ksnKsyfgesnLyl~~~~e~~----i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~ 304 (561)
T COG5354 242 MTHTKSNKSYFGESNLYLLRITERS----IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFD 304 (561)
T ss_pred EEeeecccceeccceEEEEeecccc----cceeccccccceeeeecccCCceeEEecccccceeecc
Confidence 1 23568888887431 1111255689999999999999988873 34444444
No 295
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=8.2e-06 Score=70.53 Aligned_cols=213 Identities=15% Similarity=0.107 Sum_probs=136.9
Q ss_pred ccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCC-CCceeeEEEeccccCeEEEEecCCCCCCEEEEeeC-CCcEEEeec
Q 036510 9 GHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGN-NTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSF-DGTVIIWKE 86 (288)
Q Consensus 9 ~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-d~~v~iwd~ 86 (288)
-|.+.|+.+.. ...+++.+++.|+.++.|.-.. .-.+.+..+..|.+.|-+++-+. ++.++.|.+. |..+|++|+
T Consensus 7 mhrd~i~hv~~-tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~--dg~L~~Sv~d~Dhs~KvfDv 83 (558)
T KOG0882|consen 7 MHRDVITHVFP-TKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSY--DGWLFRSVEDPDHSVKVFDV 83 (558)
T ss_pred cccceeeeEee-ehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccc--cceeEeeccCcccceeEEEe
Confidence 48888887644 3578999999999999997533 22244566678888888888764 4888999887 999999998
Q ss_pred CCCCceEEeEEeecCCCceeEEEeccCCCC-eEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCc
Q 036510 87 GNSNEWIKDHVFEDHKSSVNSIDWAPHELG-LCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGA 165 (288)
Q Consensus 87 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~-~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~ 165 (288)
.+..-. ....+.-..+.+.++ .+|.... .+.++.-.++.+.++|-+.+.+ +.....+-|..+|..+..+|.+
T Consensus 84 En~Dmi-nmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~-q~~~fkklH~sPV~~i~y~qa~---- 156 (558)
T KOG0882|consen 84 ENFDMI-NMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFC-QDGYFKKLHFSPVKKIRYNQAG---- 156 (558)
T ss_pred eccchh-hhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcC-ccceecccccCceEEEEeeccc----
Confidence 764421 011111111112221 1332111 3334446678999998765432 2223345688889999988876
Q ss_pred eecccccCCCceeEEeecCCcEEEEEEeCC-c-------eeee---eeeccccCCcceEEEEecCCCCCCCcEEEEEeCC
Q 036510 166 LVGSGFLDPVQKLCSGGCDNTVKVWKLYNG-I-------WKMD---CFPALQMHTDWVRDVAWAPNLGLPKSTIASASED 234 (288)
Q Consensus 166 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~-------~~~~---~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D 234 (288)
..++|.-..|.|.-|..... + +..+ -+..+..-+....++.|+|++ ..+++-+.|
T Consensus 157 ----------Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g----~qistl~~D 222 (558)
T KOG0882|consen 157 ----------DSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDG----AQISTLNPD 222 (558)
T ss_pred ----------cceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcccc----CcccccCcc
Confidence 45677777788999986531 0 0001 011112233456889999984 679999999
Q ss_pred CcEEEEEeecC
Q 036510 235 GKVIIWTVARE 245 (288)
Q Consensus 235 ~~i~iw~~~~~ 245 (288)
..|+++.....
T Consensus 223 rkVR~F~~KtG 233 (558)
T KOG0882|consen 223 RKVRGFVFKTG 233 (558)
T ss_pred cEEEEEEeccc
Confidence 99999998754
No 296
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.28 E-value=0.0014 Score=58.83 Aligned_cols=183 Identities=9% Similarity=-0.006 Sum_probs=97.8
Q ss_pred CeEEEEecCCCCCC-EEEEeeC---CCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCC--CcEEE
Q 036510 57 AVWEVAWAHPKFGS-ILASCSF---DGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSD--GNISV 130 (288)
Q Consensus 57 ~v~~~~~~~~~~~~-~l~s~s~---d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d--~~i~i 130 (288)
......|+++ |+ .++..+. +..|.++|+.++.. ..+....+.....+|+||+. .++.+.+.+ ..|.+
T Consensus 189 ~~~~p~wSpD--G~~~i~y~s~~~~~~~Iyv~dl~tg~~----~~lt~~~g~~~~~~~SPDG~-~la~~~~~~g~~~Iy~ 261 (419)
T PRK04043 189 LNIFPKWANK--EQTAFYYTSYGERKPTLYKYNLYTGKK----EKIASSQGMLVVSDVSKDGS-KLLLTMAPKGQPDIYL 261 (419)
T ss_pred CeEeEEECCC--CCcEEEEEEccCCCCEEEEEECCCCcE----EEEecCCCcEEeeEECCCCC-EEEEEEccCCCcEEEE
Confidence 6678899875 65 3554443 35677778765531 22333445566788999852 344444444 35666
Q ss_pred EeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCC--cEEEEEEeCCceeeeeeeccccC
Q 036510 131 FTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDN--TVKVWKLYNGIWKMDCFPALQMH 208 (288)
Q Consensus 131 ~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~h 208 (288)
+++..+. ... ...+........|+|++. .+..+....+ .|.+.|+.++... .+ ...+.
T Consensus 262 ~dl~~g~-~~~---LT~~~~~d~~p~~SPDG~-------------~I~F~Sdr~g~~~Iy~~dl~~g~~~--rl-t~~g~ 321 (419)
T PRK04043 262 YDTNTKT-LTQ---ITNYPGIDVNGNFVEDDK-------------RIVFVSDRLGYPNIFMKKLNSGSVE--QV-VFHGK 321 (419)
T ss_pred EECCCCc-EEE---cccCCCccCccEECCCCC-------------EEEEEECCCCCceEEEEECCCCCeE--eC-ccCCC
Confidence 6765432 221 122222233557999873 2333433333 4666677665321 11 11221
Q ss_pred CcceEEEEecCCCCCCCcEEEEEeCC---------CcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCC
Q 036510 209 TDWVRDVAWAPNLGLPKSTIASASED---------GKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGN 279 (288)
Q Consensus 209 ~~~V~~v~~sp~~~~~~~~l~s~s~D---------~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d 279 (288)
. ...|+|++ ++|+-.+.. ..|.+.|+.... ...+... .......|+|||+.|+..+.+
T Consensus 322 --~--~~~~SPDG----~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~----~~~LT~~-~~~~~p~~SPDG~~I~f~~~~ 388 (419)
T PRK04043 322 --N--NSSVSTYK----NYIVYSSRETNNEFGKNTFNLYLISTNSDY----IRRLTAN-GVNQFPRFSSDGGSIMFIKYL 388 (419)
T ss_pred --c--CceECCCC----CEEEEEEcCCCcccCCCCcEEEEEECCCCC----eEECCCC-CCcCCeEECCCCCEEEEEEcc
Confidence 1 24899985 556665543 246666654321 1223222 223358899999988877643
No 297
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.28 E-value=1e-05 Score=72.32 Aligned_cols=73 Identities=19% Similarity=0.321 Sum_probs=58.8
Q ss_pred cCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510 207 MHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE 286 (288)
Q Consensus 207 ~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~ 286 (288)
-....|.+++++|+ ...|+.|+.||.|++||.... .+......-.++-++|||+|..|++|+.-|.+++||
T Consensus 257 pL~s~v~~ca~sp~----E~kLvlGC~DgSiiLyD~~~~-----~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD 327 (545)
T PF11768_consen 257 PLPSQVICCARSPS----EDKLVLGCEDGSIILYDTTRG-----VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFD 327 (545)
T ss_pred ecCCcceEEecCcc----cceEEEEecCCeEEEEEcCCC-----eeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEE
Confidence 35557899999997 468999999999999998643 122223334568899999999999999999999999
Q ss_pred cC
Q 036510 287 EA 288 (288)
Q Consensus 287 ~~ 288 (288)
+|
T Consensus 328 ~A 329 (545)
T PF11768_consen 328 MA 329 (545)
T ss_pred ee
Confidence 76
No 298
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.26 E-value=0.00026 Score=65.44 Aligned_cols=244 Identities=16% Similarity=0.167 Sum_probs=143.4
Q ss_pred eEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCC----------CCEEEEeeCCCcEEE
Q 036510 14 VHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKF----------GSILASCSFDGTVII 83 (288)
Q Consensus 14 v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~----------~~~l~s~s~d~~v~i 83 (288)
-..+.|+|.| +||=||.. .|.+-|. ...+.+.++.-|+..|+.++|.|-.. .-+++++...|.|.+
T Consensus 18 ~~A~Dw~~~G-LiAygshs-lV~VVDs--~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil 93 (1062)
T KOG1912|consen 18 RNAADWSPSG-LIAYGSHS-LVSVVDS--RSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIIL 93 (1062)
T ss_pred ccccccCccc-eEEEecCc-eEEEEeh--hhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEE
Confidence 3456789888 55555544 5666665 34567888999999999999986321 136678888999999
Q ss_pred eecCCCCceEEeEEeecCCCceeEEEeccCC--CCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCC
Q 036510 84 WKEGNSNEWIKDHVFEDHKSSVNSIDWAPHE--LGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPST 161 (288)
Q Consensus 84 wd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~--~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~ 161 (288)
||..... .+..+..|.+++..+.|-|.. +-.+|++-....+|.+|+..+++.+ ++..-+| ....++.+.|..
T Consensus 94 ~d~~~~s---~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~--Wk~~ys~-~iLs~f~~DPfd 167 (1062)
T KOG1912|consen 94 VDFVLAS---VINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKF--WKYDYSH-EILSCFRVDPFD 167 (1062)
T ss_pred EEehhhh---hhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCcee--eccccCC-cceeeeeeCCCC
Confidence 9987543 223466788899999986643 2245565666789999998876532 2222222 335568888876
Q ss_pred CCCceecccccCCCceeEEeecCCcEEEEEEeCC---ceeeeeeeccccCCc-------------------------ceE
Q 036510 162 APGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNG---IWKMDCFPALQMHTD-------------------------WVR 213 (288)
Q Consensus 162 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~~~~~~h~~-------------------------~V~ 213 (288)
. +.++.-+..|.+-+-+.... .-..+..+.-..|.+ +.-
T Consensus 168 ~-------------rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a 234 (1062)
T KOG1912|consen 168 S-------------RHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCA 234 (1062)
T ss_pred c-------------ceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHH
Confidence 4 22222222333333332110 000000000011111 122
Q ss_pred EEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCC--EEEEEeCCCcEEEeEc
Q 036510 214 DVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGN--ILAVADGNNNVTLWEE 287 (288)
Q Consensus 214 ~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~--~l~s~~~d~~v~~w~~ 287 (288)
-++|+|.- +-++-......+.++|++.+. . ...+.=..+.+.-+.+-|+++ .|...-.||.+.+|..
T Consensus 235 ~faf~p~~----rn~lfi~~prellv~dle~~~--~-l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvr 303 (1062)
T KOG1912|consen 235 QFAFSPHW----RNILFITFPRELLVFDLEYEC--C-LAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVR 303 (1062)
T ss_pred hhhcChhh----hceEEEEeccceEEEcchhhc--e-eEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEe
Confidence 24667753 234445567789999987542 1 111111234455677778875 4778889999999963
No 299
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.21 E-value=7.6e-07 Score=79.89 Aligned_cols=209 Identities=17% Similarity=0.243 Sum_probs=125.5
Q ss_pred cceEEEEEcCCC--CEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEee----CCCcEEEee
Q 036510 12 DTVHDVAMDYYG--KRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCS----FDGTVIIWK 85 (288)
Q Consensus 12 ~~v~~~~~s~~g--~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s----~d~~v~iwd 85 (288)
..+.+++.+-+. -+++.|..+|.|-+-.+.......-....+|....++++|++- |.+.||.|- .|..+.|||
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneL-Dtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNEL-DTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccc-cHHHHHhhhhhhcccCCcccee
Confidence 345556554433 4678899999999887643322223345678889999999863 567787763 588999999
Q ss_pred cCCCCceE-EeEEeec-CCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCC
Q 036510 86 EGNSNEWI-KDHVFED-HKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAP 163 (288)
Q Consensus 86 ~~~~~~~~-~~~~~~~-h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~ 163 (288)
+...-+.+ ....+.. -....++++|-.+ .+++.+|...+++.++|+|.... ......+..+.-+..+|..+
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd--~klvlaGm~sr~~~ifdlRqs~~----~~~svnTk~vqG~tVdp~~~- 208 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRD--TKLVLAGMTSRSVHIFDLRQSLD----SVSSVNTKYVQGITVDPFSP- 208 (783)
T ss_pred cccccCCCccccccccccccCccccccccC--cchhhcccccchhhhhhhhhhhh----hhhhhhhhhcccceecCCCC-
Confidence 86541110 0011111 2234557777654 67788898889999999984311 11111112233344445332
Q ss_pred CceecccccCCCceeEEeecCCcEEEEEE-eCCceeeee-eeccccCCcceEEEEecCCCCCCCcEEEEEeCCC-cEEEE
Q 036510 164 GALVGSGFLDPVQKLCSGGCDNTVKVWKL-YNGIWKMDC-FPALQMHTDWVRDVAWAPNLGLPKSTIASASEDG-KVIIW 240 (288)
Q Consensus 164 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~-~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~-~i~iw 240 (288)
+++|+.. |+.|-+||. +.-...+.. .+.-......+..++|+|.. ..++++...|. +|+.+
T Consensus 209 ------------nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtr---tglla~l~RdS~tIrly 272 (783)
T KOG1008|consen 209 ------------NYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTR---TGLLAVLSRDSITIRLY 272 (783)
T ss_pred ------------Cceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCC---cchhhhhccCcceEEEe
Confidence 5688766 899999994 322111110 00001112248899999975 45788888754 89999
Q ss_pred Eeec
Q 036510 241 TVAR 244 (288)
Q Consensus 241 ~~~~ 244 (288)
++..
T Consensus 273 di~~ 276 (783)
T KOG1008|consen 273 DICV 276 (783)
T ss_pred cccc
Confidence 9875
No 300
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.17 E-value=0.0018 Score=56.94 Aligned_cols=187 Identities=11% Similarity=0.131 Sum_probs=112.5
Q ss_pred CCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCC--------CceeEEE-eccCCCCeEEEEEeCCCcEEEEeecCCC
Q 036510 67 KFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHK--------SSVNSID-WAPHELGLCLACGSSDGNISVFTARADG 137 (288)
Q Consensus 67 ~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~--------~~v~~l~-~~p~~~~~~l~sg~~d~~i~i~d~~~~~ 137 (288)
.+|..++- ++.|.|.++|..+.....+..-++..+ .+..-+. |++.+ +.+++..+. |...|.+.-.+
T Consensus 276 sDGkrIvF-q~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~-Gd~ia~VSR-GkaFi~~~~~~- 351 (668)
T COG4946 276 SDGKRIVF-QNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVN-GDYIALVSR-GKAFIMRPWDG- 351 (668)
T ss_pred CCCcEEEE-ecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCC-CcEEEEEec-CcEEEECCCCC-
Confidence 35776665 566899999987643211111111111 1111121 34432 555665554 44555543222
Q ss_pred CeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCC-cEEEEEEeCCceeeeeeeccccCCcceEEEE
Q 036510 138 GWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDN-TVKVWKLYNGIWKMDCFPALQMHTDWVRDVA 216 (288)
Q Consensus 138 ~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~ 216 (288)
..+.-+|+..|.-..+..+. .-++.|..|+ .+-|+|..++. +..+...-+.|.+|.
T Consensus 352 ----~~iqv~~~~~VrY~r~~~~~--------------e~~vigt~dgD~l~iyd~~~~e-----~kr~e~~lg~I~av~ 408 (668)
T COG4946 352 ----YSIQVGKKGGVRYRRIQVDP--------------EGDVIGTNDGDKLGIYDKDGGE-----VKRIEKDLGNIEAVK 408 (668)
T ss_pred ----eeEEcCCCCceEEEEEccCC--------------cceEEeccCCceEEEEecCCce-----EEEeeCCccceEEEE
Confidence 12223455555554444333 3467777888 79999998873 223344556799999
Q ss_pred ecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEee-ccccCeEEEEeecCCCEEEEEeCCC----cEEEeEcC
Q 036510 217 WAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLH-DFKTPVYRVSWSLTGNILAVADGNN----NVTLWEEA 288 (288)
Q Consensus 217 ~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~-~~~~~i~~~~~spdg~~l~s~~~d~----~v~~w~~~ 288 (288)
.+|++ +++|.+..-..|-+.|+.... .+.+. .-.+-|+...|||++++||.+=.+| .|+|+|++
T Consensus 409 vs~dG----K~~vvaNdr~el~vididngn----v~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~ 477 (668)
T COG4946 409 VSPDG----KKVVVANDRFELWVIDIDNGN----VRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMD 477 (668)
T ss_pred EcCCC----cEEEEEcCceEEEEEEecCCC----eeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecC
Confidence 99984 678888888888888887542 12222 2235799999999999999996665 68888863
No 301
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.16 E-value=2.6e-06 Score=79.15 Aligned_cols=220 Identities=17% Similarity=0.233 Sum_probs=130.4
Q ss_pred ccccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEee-CC-CcEE
Q 036510 5 KIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCS-FD-GTVI 82 (288)
Q Consensus 5 ~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~d-~~v~ 82 (288)
+.+..|+..-++++|+-+.+.|+.|+..|.|+++++..+ .......+|..+|+.+.=+. +|...++.| .. .-..
T Consensus 1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG--~~e~s~ncH~SavT~vePs~--dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSG--SMEESVNCHQSAVTLVEPSV--DGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred hhhhccccceeeEEeecCCceEEeeeccceEEEEEccCc--cccccccccccccccccccC--CcceeeeeccccCchHH
Confidence 455678888899999998899999999999999998644 44667889999999998544 465555433 33 3577
Q ss_pred EeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEe-eccCCCCeeEEEeCCCC
Q 036510 83 IWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRI-DQAHPVGVTSVSWAPST 161 (288)
Q Consensus 83 iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~v~~i~~~p~~ 161 (288)
+|++.... ...+++. .-.++.|+-. .... +.|..-....+||+.+...++.... .-+.+..-....|+|..
T Consensus 1171 LW~~~s~~--~~~Hsf~----ed~~vkFsn~-~q~r-~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D 1242 (1516)
T KOG1832|consen 1171 LWDASSTG--GPRHSFD----EDKAVKFSNS-LQFR-ALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCD 1242 (1516)
T ss_pred Hhcccccc--Ccccccc----ccceeehhhh-HHHH-HhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCc
Confidence 99986532 2344442 3467788754 1222 2333334577899987654433111 11111122456677765
Q ss_pred CCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEE
Q 036510 162 APGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWT 241 (288)
Q Consensus 162 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~ 241 (288)
.++. .|| -+||++..+ -++.+......+.. -|+|++ ..++--+. |||
T Consensus 1243 --------------~LIl---ndG--vLWDvR~~~----aIh~FD~ft~~~~G-~FHP~g----~eVIINSE-----IwD 1289 (1516)
T KOG1832|consen 1243 --------------TLIL---NDG--VLWDVRIPE----AIHRFDQFTDYGGG-GFHPSG----NEVIINSE-----IWD 1289 (1516)
T ss_pred --------------ceEe---eCc--eeeeeccHH----HHhhhhhheecccc-cccCCC----ceEEeech-----hhh
Confidence 2222 133 369998752 23333333322222 688874 44544443 898
Q ss_pred eecCCCcccceEeeccc-cCeEEEEeecCCCEEEE
Q 036510 242 VAREGDQWEGKVLHDFK-TPVYRVSWSLTGNILAV 275 (288)
Q Consensus 242 ~~~~~~~~~~~~~~~~~-~~i~~~~~spdg~~l~s 275 (288)
++.- .+++... =.-..+.|+..|..++.
T Consensus 1290 ~RTF------~lLh~VP~Ldqc~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1290 MRTF------KLLHSVPSLDQCAVTFNSTGDVMYA 1318 (1516)
T ss_pred hHHH------HHHhcCccccceEEEeccCccchhh
Confidence 8742 2222221 12356888888887653
No 302
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.13 E-value=2e-05 Score=66.02 Aligned_cols=153 Identities=16% Similarity=0.206 Sum_probs=97.7
Q ss_pred CCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCC---CceEEeEEe
Q 036510 22 YGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNS---NEWIKDHVF 98 (288)
Q Consensus 22 ~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~---~~~~~~~~~ 98 (288)
.|-. ++.+.+-.|-|-++..+.. ..+. -+++|.++.|.. .++++..|..+|.|-..|++.. +.|. .+.+
T Consensus 224 ~gyh-fs~G~sqqv~L~nvetg~~---qsf~-sksDVfAlQf~~--s~nLv~~GcRngeI~~iDLR~rnqG~~~~-a~rl 295 (425)
T KOG2695|consen 224 MGYH-FSVGLSQQVLLTNVETGHQ---QSFQ-SKSDVFALQFAG--SDNLVFNGCRNGEIFVIDLRCRNQGNGWC-AQRL 295 (425)
T ss_pred ceee-ecccccceeEEEEeecccc---cccc-cchhHHHHHhcc--cCCeeEecccCCcEEEEEeeecccCCCcc-eEEE
Confidence 3544 6667777777777654322 2222 467788888853 3689999999999999999754 2232 2233
Q ss_pred ecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCcee
Q 036510 99 EDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKL 178 (288)
Q Consensus 99 ~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l 178 (288)
. |...|+++..--- +...|.+.+.+|+|.+||.|.-..-...+..++|-..-.-+-+.-+. ....+
T Consensus 296 y-h~Ssvtslq~Lq~-s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~------------eeg~I 361 (425)
T KOG2695|consen 296 Y-HDSSVTSLQILQF-SQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKE------------EEGSI 361 (425)
T ss_pred E-cCcchhhhhhhcc-ccceEeeccCcCceeEeeehhhhcccceeeeeccccccccccccccc------------ccceE
Confidence 3 7788888754321 13456667799999999998643212245567775433333222111 13567
Q ss_pred EEeecCCcEEEEEEeCCc
Q 036510 179 CSGGCDNTVKVWKLYNGI 196 (288)
Q Consensus 179 ~s~~~d~~i~iwd~~~~~ 196 (288)
++++.|-..|||.+..+.
T Consensus 362 ~s~GdDcytRiWsl~~gh 379 (425)
T KOG2695|consen 362 FSVGDDCYTRIWSLDSGH 379 (425)
T ss_pred EEccCeeEEEEEecccCc
Confidence 889999999999998763
No 303
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=4.4e-05 Score=66.14 Aligned_cols=210 Identities=13% Similarity=0.075 Sum_probs=130.6
Q ss_pred ccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeC-CCcEEEE
Q 036510 53 GHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSS-DGNISVF 131 (288)
Q Consensus 53 ~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~-d~~i~i~ 131 (288)
-|.+.|+.+.-. ..+++.++|.||.++.|--....-...+.-+..|...|.+++.+-+ +.++.+.+. |..++++
T Consensus 7 mhrd~i~hv~~t---ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~d--g~L~~Sv~d~Dhs~Kvf 81 (558)
T KOG0882|consen 7 MHRDVITHVFPT---KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYD--GWLFRSVEDPDHSVKVF 81 (558)
T ss_pred cccceeeeEeee---hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhcccc--ceeEeeccCcccceeEE
Confidence 377777776533 3679999999999999965321111112223457788888887766 677888766 9999999
Q ss_pred eecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEe-ecCCcEEEEEEeCCceeeeeeeccccCCc
Q 036510 132 TARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSG-GCDNTVKVWKLYNGIWKMDCFPALQMHTD 210 (288)
Q Consensus 132 d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~h~~ 210 (288)
|+.+-.-.+- ..+..-+..+ ++..+|... ...++.+ -.++.+.++|-..... +....-..|..
T Consensus 82 DvEn~Dminm-iKL~~lPg~a-~wv~skGd~------------~s~IAVs~~~sg~i~VvD~~~d~~--q~~~fkklH~s 145 (558)
T KOG0882|consen 82 DVENFDMINM-IKLVDLPGFA-EWVTSKGDK------------ISLIAVSLFKSGKIFVVDGFGDFC--QDGYFKKLHFS 145 (558)
T ss_pred Eeeccchhhh-cccccCCCce-EEecCCCCe------------eeeEEeecccCCCcEEECCcCCcC--ccceecccccC
Confidence 9875321110 0111122222 222233221 1233333 3456688888654321 12223367999
Q ss_pred ceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEe---------ecc---ccCeEEEEeecCCCEEEEEeC
Q 036510 211 WVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVL---------HDF---KTPVYRVSWSLTGNILAVADG 278 (288)
Q Consensus 211 ~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~---------~~~---~~~i~~~~~spdg~~l~s~~~ 278 (288)
+|..+.++|.+ ..++|.-..|.|.-|......+..+..+. .++ ++...++.|+|+|..++.-+.
T Consensus 146 PV~~i~y~qa~----Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~ 221 (558)
T KOG0882|consen 146 PVKKIRYNQAG----DSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNP 221 (558)
T ss_pred ceEEEEeeccc----cceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCc
Confidence 99999999974 45777777889999988732111111111 111 345789999999999999999
Q ss_pred CCcEEEeEc
Q 036510 279 NNNVTLWEE 287 (288)
Q Consensus 279 d~~v~~w~~ 287 (288)
|.+|++++.
T Consensus 222 DrkVR~F~~ 230 (558)
T KOG0882|consen 222 DRKVRGFVF 230 (558)
T ss_pred ccEEEEEEe
Confidence 999999874
No 304
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.11 E-value=0.0035 Score=56.31 Aligned_cols=190 Identities=7% Similarity=-0.004 Sum_probs=95.1
Q ss_pred ceEEEEEcCCCCE-EEEeeCC---CcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEE-EEeeCCC--cEEEee
Q 036510 13 TVHDVAMDYYGKR-LATASSD---YSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSIL-ASCSFDG--TVIIWK 85 (288)
Q Consensus 13 ~v~~~~~s~~g~~-l~s~~~d---~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~s~d~--~v~iwd 85 (288)
....-.|+|||+. ++-.+.+ ..|.++|+..+..+.+ ....+......|+++ |+.+ ++.+.++ .|.+++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~l---t~~~g~~~~~~~SPD--G~~la~~~~~~g~~~Iy~~d 263 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKI---ASSQGMLVVSDVSKD--GSKLLLTMAPKGQPDIYLYD 263 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEE---ecCCCcEEeeEECCC--CCEEEEEEccCCCcEEEEEE
Confidence 4556789999984 5544544 4466667654433333 233445566789875 6544 4555454 455556
Q ss_pred cCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCC--cEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCC
Q 036510 86 EGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDG--NISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAP 163 (288)
Q Consensus 86 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~ 163 (288)
+..+. . ..+..+........|+||+. .++.+....+ .|.++|+..+. .... ...+. ....|+|++.
T Consensus 264 l~~g~-~---~~LT~~~~~d~~p~~SPDG~-~I~F~Sdr~g~~~Iy~~dl~~g~-~~rl-t~~g~----~~~~~SPDG~- 331 (419)
T PRK04043 264 TNTKT-L---TQITNYPGIDVNGNFVEDDK-RIVFVSDRLGYPNIFMKKLNSGS-VEQV-VFHGK----NNSSVSTYKN- 331 (419)
T ss_pred CCCCc-E---EEcccCCCccCccEECCCCC-EEEEEECCCCCceEEEEECCCCC-eEeC-ccCCC----cCceECCCCC-
Confidence 65443 2 22333333334567999953 3333333344 45555654332 1111 11111 1248999883
Q ss_pred CceecccccCCCceeE-EeecC--------CcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeC-
Q 036510 164 GALVGSGFLDPVQKLC-SGGCD--------NTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASE- 233 (288)
Q Consensus 164 ~~~~~~~~~~~~~~l~-s~~~d--------~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~- 233 (288)
.++ +.... ..|.+.|+.++.. +. +... .......|+||+ ++|+-.+.
T Consensus 332 -------------~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~--~~---LT~~-~~~~~p~~SPDG----~~I~f~~~~ 388 (419)
T PRK04043 332 -------------YIVYSSRETNNEFGKNTFNLYLISTNSDYI--RR---LTAN-GVNQFPRFSSDG----GSIMFIKYL 388 (419)
T ss_pred -------------EEEEEEcCCCcccCCCCcEEEEEECCCCCe--EE---CCCC-CCcCCeEECCCC----CEEEEEEcc
Confidence 333 22222 2567777766531 21 2211 122357899985 45555443
Q ss_pred CCcEEEEEe
Q 036510 234 DGKVIIWTV 242 (288)
Q Consensus 234 D~~i~iw~~ 242 (288)
.+.-.++-+
T Consensus 389 ~~~~~L~~~ 397 (419)
T PRK04043 389 GNQSALGII 397 (419)
T ss_pred CCcEEEEEE
Confidence 333334433
No 305
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=0.00055 Score=63.52 Aligned_cols=158 Identities=16% Similarity=0.250 Sum_probs=97.4
Q ss_pred ccccceEEEEEcC-------------CCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCC---CCCCEE
Q 036510 9 GHEDTVHDVAMDY-------------YGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHP---KFGSIL 72 (288)
Q Consensus 9 ~h~~~v~~~~~s~-------------~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~~~l 72 (288)
-|.+.|+-..+.- +|.|++|||.||+|.|-.+... +...++. .+-++..+++.|+ +....|
T Consensus 56 tH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~--~~~~~~d-f~rpiksial~Pd~~~~~sk~f 132 (846)
T KOG2066|consen 56 THRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTD--DEITQYD-FKRPIKSIALHPDFSRQQSKQF 132 (846)
T ss_pred cccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCC--ccceeEe-cCCcceeEEeccchhhhhhhhe
Confidence 4666666655443 4999999999999999877433 3333333 3567888998765 246789
Q ss_pred EEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCC---
Q 036510 73 ASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHP--- 149 (288)
Q Consensus 73 ~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~--- 149 (288)
++|+.-| +.++.-.=-+.+.. ..+..-.++|.++.|.. .++|=++.+| +++||+...+... .+...+.
T Consensus 133 v~GG~ag-lvL~er~wlgnk~~-v~l~~~eG~I~~i~W~g----~lIAWand~G-v~vyd~~~~~~l~--~i~~p~~~~R 203 (846)
T KOG2066|consen 133 VSGGMAG-LVLSERNWLGNKDS-VVLSEGEGPIHSIKWRG----NLIAWANDDG-VKVYDTPTRQRLT--NIPPPSQSVR 203 (846)
T ss_pred eecCcce-EEEehhhhhcCccc-eeeecCccceEEEEecC----cEEEEecCCC-cEEEeccccceee--ccCCCCCCCC
Confidence 9999988 77764211111111 13445678999999985 4566666555 8999987654321 1111111
Q ss_pred --CCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeC
Q 036510 150 --VGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYN 194 (288)
Q Consensus 150 --~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 194 (288)
..-..+.|.++ ..|+- |+..+|+|..++.
T Consensus 204 ~e~fpphl~W~~~---------------~~LVI-GW~d~v~i~~I~~ 234 (846)
T KOG2066|consen 204 PELFPPHLHWQDE---------------DRLVI-GWGDSVKICSIKK 234 (846)
T ss_pred cccCCCceEecCC---------------CeEEE-ecCCeEEEEEEec
Confidence 11223556554 34555 4666888888873
No 306
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.07 E-value=0.0032 Score=55.74 Aligned_cols=188 Identities=12% Similarity=0.146 Sum_probs=92.4
Q ss_pred CCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEE--eccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeec
Q 036510 69 GSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSID--WAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQ 146 (288)
Q Consensus 69 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~--~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~ 146 (288)
+..++.++.++.+..||..++.. ...+.... +...+. -+|.-.+..++.+..++.+..+|.+++.. .+....
T Consensus 145 ~~~v~v~~~~g~l~a~d~~tG~~---~W~~~~~~-~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~--~W~~~~ 218 (377)
T TIGR03300 145 NGLVVVRTNDGRLTALDAATGER---LWTYSRVT-PALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQP--LWEQRV 218 (377)
T ss_pred CCEEEEECCCCeEEEEEcCCCce---eeEEccCC-CceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCE--eeeecc
Confidence 34566677789999999877652 12221111 111110 01110012456677788888888876532 111110
Q ss_pred cCCCC---eeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCC
Q 036510 147 AHPVG---VTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGL 223 (288)
Q Consensus 147 ~~~~~---v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~ 223 (288)
..+.. +..+... ....... +..++.++.++.+..+|..++. .+.... ... .......
T Consensus 219 ~~~~g~~~~~~~~~~--------~~~p~~~-~~~vy~~~~~g~l~a~d~~tG~----~~W~~~-~~~-~~~p~~~----- 278 (377)
T TIGR03300 219 ALPKGRTELERLVDV--------DGDPVVD-GGQVYAVSYQGRVAALDLRSGR----VLWKRD-ASS-YQGPAVD----- 278 (377)
T ss_pred ccCCCCCchhhhhcc--------CCccEEE-CCEEEEEEcCCEEEEEECCCCc----EEEeec-cCC-ccCceEe-----
Confidence 00000 0000000 0000111 2456777789999999998773 222211 111 0111111
Q ss_pred CCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510 224 PKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 224 ~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~ 287 (288)
+.+|..++.|+.+..+|.......++...+.. ....+.. ..|..+++++.||.|+++|.
T Consensus 279 -~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~--~~~ssp~--i~g~~l~~~~~~G~l~~~d~ 337 (377)
T TIGR03300 279 -DNRLYVTDADGVVVALDRRSGSELWKNDELKY--RQLTAPA--VVGGYLVVGDFEGYLHWLSR 337 (377)
T ss_pred -CCEEEEECCCCeEEEEECCCCcEEEccccccC--CccccCE--EECCEEEEEeCCCEEEEEEC
Confidence 34677888999999999865432222211110 0111111 14678888999999999884
No 307
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.06 E-value=5.7e-05 Score=70.71 Aligned_cols=146 Identities=13% Similarity=0.250 Sum_probs=101.3
Q ss_pred CCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEee---------CCCcEEEeecCCCCc
Q 036510 21 YYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCS---------FDGTVIIWKEGNSNE 91 (288)
Q Consensus 21 ~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s---------~d~~v~iwd~~~~~~ 91 (288)
.+++++.+|...|+|.|-|... .+.++++.+|++.|.++... |++|++|+ .|..|+|||++.-..
T Consensus 185 ~Nnr~lf~G~t~G~V~LrD~~s--~~~iht~~aHs~siSDfDv~----GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra 258 (1118)
T KOG1275|consen 185 YNNRNLFCGDTRGTVFLRDPNS--FETIHTFDAHSGSISDFDVQ----GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA 258 (1118)
T ss_pred ecCcEEEeecccceEEeecCCc--Cceeeeeeccccceeeeecc----CCeEEEeecccccccccccchhhhhhhhhhhc
Confidence 3578899999999999988753 46789999999999877652 88999987 588899999876432
Q ss_pred eEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccC--CCCeeEEEeCCCCCCCceecc
Q 036510 92 WIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAH--PVGVTSVSWAPSTAPGALVGS 169 (288)
Q Consensus 92 ~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~--~~~v~~i~~~p~~~~~~~~~~ 169 (288)
. ..+.-+.++ .-+.|+|.- ...++..+..|...+-|...-.. .+....+.+ ...+..+++++++
T Consensus 259 l---~PI~~~~~P-~flrf~Psl-~t~~~V~S~sGq~q~vd~~~lsN-P~~~~~~v~p~~s~i~~fDiSsn~-------- 324 (1118)
T KOG1275|consen 259 L---SPIQFPYGP-QFLRFHPSL-TTRLAVTSQSGQFQFVDTATLSN-PPAGVKMVNPNGSGISAFDISSNG-------- 324 (1118)
T ss_pred c---CCcccccCc-hhhhhcccc-cceEEEEecccceeeccccccCC-CccceeEEccCCCcceeEEecCCC--------
Confidence 1 112223333 567888875 34577778888888887432111 011111222 3346777777765
Q ss_pred cccCCCceeEEeecCCcEEEEEE
Q 036510 170 GFLDPVQKLCSGGCDNTVKVWKL 192 (288)
Q Consensus 170 ~~~~~~~~l~s~~~d~~i~iwd~ 192 (288)
+.++-|..++.|.+|--
T Consensus 325 ------~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 325 ------DALAFGDHEGHVNLWAD 341 (1118)
T ss_pred ------ceEEEecccCcEeeecC
Confidence 78999999999999973
No 308
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.04 E-value=0.00061 Score=61.30 Aligned_cols=74 Identities=18% Similarity=0.239 Sum_probs=57.5
Q ss_pred CCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEE
Q 036510 101 HKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCS 180 (288)
Q Consensus 101 h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s 180 (288)
....|.|++++|++ ..++.|+.||+|.+||...+... . .........++|.|++ .+++.
T Consensus 258 L~s~v~~ca~sp~E--~kLvlGC~DgSiiLyD~~~~~t~--~---~ka~~~P~~iaWHp~g--------------ai~~V 316 (545)
T PF11768_consen 258 LPSQVICCARSPSE--DKLVLGCEDGSIILYDTTRGVTL--L---AKAEFIPTLIAWHPDG--------------AIFVV 316 (545)
T ss_pred cCCcceEEecCccc--ceEEEEecCCeEEEEEcCCCeee--e---eeecccceEEEEcCCC--------------cEEEE
Confidence 56689999999985 45788999999999998764221 1 1233457789999997 67899
Q ss_pred eecCCcEEEEEEeCC
Q 036510 181 GGCDNTVKVWKLYNG 195 (288)
Q Consensus 181 ~~~d~~i~iwd~~~~ 195 (288)
|+..|.+.+||+.-+
T Consensus 317 ~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 317 GSEQGELQCFDMALS 331 (545)
T ss_pred EcCCceEEEEEeecC
Confidence 999999999999543
No 309
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.96 E-value=5e-06 Score=74.82 Aligned_cols=207 Identities=18% Similarity=0.270 Sum_probs=122.6
Q ss_pred ccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEE----eCCCcEEE
Q 036510 55 KGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACG----SSDGNISV 130 (288)
Q Consensus 55 ~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg----~~d~~i~i 130 (288)
...+.+++++...+..+++.|.++|.|.+-..++.-.. --...+++...+++++|++-+. ..||+| ..|-.+.|
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-s~E~tp~~ar~Ct~lAwneLDt-n~LAagldkhrnds~~~I 133 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-SAEVTPGYARPCTSLAWNELDT-NHLAAGLDKHRNDSSLKI 133 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccc-cceecccccccccccccccccH-HHHHhhhhhhcccCCccc
Confidence 34567788776544578899999999999877653211 1123467788999999998643 345555 34557899
Q ss_pred EeecCCC--CeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccC
Q 036510 131 FTARADG--GWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMH 208 (288)
Q Consensus 131 ~d~~~~~--~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h 208 (288)
||+...- .........+......++.|..+. .++.+|...++++++|++.... ....+ .
T Consensus 134 wdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~--------------klvlaGm~sr~~~ifdlRqs~~---~~~sv--n 194 (783)
T KOG1008|consen 134 WDINSLLTVPKESPLFSSSTLDGQNSVCWLRDT--------------KLVLAGMTSRSVHIFDLRQSLD---SVSSV--N 194 (783)
T ss_pred eecccccCCCccccccccccccCccccccccCc--------------chhhcccccchhhhhhhhhhhh---hhhhh--h
Confidence 9987541 111111111122234456665443 6788999999999999984311 11111 2
Q ss_pred CcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEe-ecCCCcccceEeecc---ccCeEEEEeecCCC-EEEEEeCC-CcE
Q 036510 209 TDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTV-AREGDQWEGKVLHDF---KTPVYRVSWSLTGN-ILAVADGN-NNV 282 (288)
Q Consensus 209 ~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~-~~~~~~~~~~~~~~~---~~~i~~~~~spdg~-~l~s~~~d-~~v 282 (288)
+..|..+...|-. +.|+++-+ |+.|-+||. ...+.+. ....+.. .+.+..++|.|.-+ .+++...| ++|
T Consensus 195 Tk~vqG~tVdp~~---~nY~cs~~-dg~iAiwD~~rnienpl-~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tI 269 (783)
T KOG1008|consen 195 TKYVQGITVDPFS---PNYFCSNS-DGDIAIWDTYRNIENPL-QIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITI 269 (783)
T ss_pred hhhcccceecCCC---CCceeccc-cCceeeccchhhhccHH-HHHhhCCCCcccceeeEEeccCCcchhhhhccCcceE
Confidence 2234555555632 35776655 999999994 3221111 0111110 12488999999753 55666554 678
Q ss_pred EEeEc
Q 036510 283 TLWEE 287 (288)
Q Consensus 283 ~~w~~ 287 (288)
+++++
T Consensus 270 rlydi 274 (783)
T KOG1008|consen 270 RLYDI 274 (783)
T ss_pred EEecc
Confidence 88874
No 310
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.92 E-value=0.0061 Score=57.31 Aligned_cols=200 Identities=13% Similarity=0.145 Sum_probs=118.2
Q ss_pred EEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCc-----EEEeecCCC--C
Q 036510 18 AMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGT-----VIIWKEGNS--N 90 (288)
Q Consensus 18 ~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~-----v~iwd~~~~--~ 90 (288)
+|++.+-.++-|+.+|.|.+.+- ..+.++.+.+|..++...-|.-. .-.+|++.+.|.+ ++||++... +
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~---s~~~~~~fqa~~~siv~~L~~~~-~~~~L~sv~Ed~~~np~llkiw~lek~~~n 105 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNS---SFQLIRGFQAYEQSIVQFLYILN-KQNFLFSVGEDEQGNPVLLKIWDLEKVDKN 105 (933)
T ss_pred EEcCCCceEEEeeccccEEEecc---cceeeehheecchhhhhHhhccc-CceEEEEEeecCCCCceEEEEecccccCCC
Confidence 46777888999999998877653 33445777788877322223221 2358888887765 899998532 2
Q ss_pred c-eEEe---EEee----cCCCceeEEEeccCCCCeEEEEEeCCCcEEEEe--ecCCCCeeeEEeeccCCCCeeEEEeCCC
Q 036510 91 E-WIKD---HVFE----DHKSSVNSIDWAPHELGLCLACGSSDGNISVFT--ARADGGWDTSRIDQAHPVGVTSVSWAPS 160 (288)
Q Consensus 91 ~-~~~~---~~~~----~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d--~~~~~~~~~~~~~~~~~~~v~~i~~~p~ 160 (288)
. ..++ +.++ ....++.+++++-+ -..+|+|=.+|.|..+. +-++... ..........+|+.+.+..+
T Consensus 106 ~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~--l~~Iv~Gf~nG~V~~~~GDi~RDrgs-r~~~~~~~~~pITgL~~~~d 182 (933)
T KOG2114|consen 106 NSPQCLYEHRIFTIKNPTNPSPASSLAVSED--LKTIVCGFTNGLVICYKGDILRDRGS-RQDYSHRGKEPITGLALRSD 182 (933)
T ss_pred CCcceeeeeeeeccCCCCCCCcceEEEEEcc--ccEEEEEecCcEEEEEcCcchhcccc-ceeeeccCCCCceeeEEecC
Confidence 2 1122 1111 23557888988876 56788888888887763 2111111 11111112345776666544
Q ss_pred CCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEE
Q 036510 161 TAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIW 240 (288)
Q Consensus 161 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw 240 (288)
+ ..++=...-..|.+|.+.... + ....+..|.-.++|..|++.. ++.+++++. -+.+|
T Consensus 183 ~--------------~s~lFv~Tt~~V~~y~l~gr~-p--~~~~ld~~G~~lnCss~~~~t---~qfIca~~e--~l~fY 240 (933)
T KOG2114|consen 183 G--------------KSVLFVATTEQVMLYSLSGRT-P--SLKVLDNNGISLNCSSFSDGT---YQFICAGSE--FLYFY 240 (933)
T ss_pred C--------------ceeEEEEecceeEEEEecCCC-c--ceeeeccCCccceeeecCCCC---ccEEEecCc--eEEEE
Confidence 4 221212224679999987432 1 233456677789999999853 334544443 68899
Q ss_pred EeecCC
Q 036510 241 TVAREG 246 (288)
Q Consensus 241 ~~~~~~ 246 (288)
+....+
T Consensus 241 ~sd~~~ 246 (933)
T KOG2114|consen 241 DSDGRG 246 (933)
T ss_pred cCCCcc
Confidence 876543
No 311
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=0.00073 Score=57.99 Aligned_cols=84 Identities=17% Similarity=0.218 Sum_probs=66.9
Q ss_pred eEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCc
Q 036510 48 LAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGN 127 (288)
Q Consensus 48 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~ 127 (288)
..-+.+|...|.+++|++.. ..++..++-+..|+|.|+++.. ....+..| ..+++++|..++ ..++.+|-..|.
T Consensus 186 sq~lp~~g~~IrdlafSp~~-~GLl~~asl~nkiki~dlet~~---~vssy~a~-~~~wSC~wDlde-~h~IYaGl~nG~ 259 (463)
T KOG1645|consen 186 SQILPGEGSFIRDLAFSPFN-EGLLGLASLGNKIKIMDLETSC---VVSSYIAY-NQIWSCCWDLDE-RHVIYAGLQNGM 259 (463)
T ss_pred hhcccccchhhhhhccCccc-cceeeeeccCceEEEEecccce---eeeheecc-CCceeeeeccCC-cceeEEeccCce
Confidence 44456788889999998753 3478899999999999998754 33445555 689999999886 567888999999
Q ss_pred EEEEeecCCC
Q 036510 128 ISVFTARADG 137 (288)
Q Consensus 128 i~i~d~~~~~ 137 (288)
|.+||+|...
T Consensus 260 VlvyD~R~~~ 269 (463)
T KOG1645|consen 260 VLVYDMRQPE 269 (463)
T ss_pred EEEEEccCCC
Confidence 9999999754
No 312
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.81 E-value=0.00062 Score=63.06 Aligned_cols=167 Identities=20% Similarity=0.358 Sum_probs=106.6
Q ss_pred CCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEE
Q 036510 101 HKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCS 180 (288)
Q Consensus 101 h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s 180 (288)
|...-.+++|+|. | ++|.|+ ...|.+-|.++-+ .....+-|+..|+.+.|.|....-.+..-. ...-++++
T Consensus 14 ~~sN~~A~Dw~~~--G-LiAygs-hslV~VVDs~s~q---~iqsie~h~s~V~~VrWap~~~p~~llS~~--~~~lliAs 84 (1062)
T KOG1912|consen 14 SRSNRNAADWSPS--G-LIAYGS-HSLVSVVDSRSLQ---LIQSIELHQSAVTSVRWAPAPSPRDLLSPS--SSQLLIAS 84 (1062)
T ss_pred CcccccccccCcc--c-eEEEec-CceEEEEehhhhh---hhhccccCccceeEEEeccCCCchhccCcc--ccceeEEe
Confidence 3444678899996 3 466664 3567788877543 334456688899999999875322211100 01135778
Q ss_pred eecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccc-c
Q 036510 181 GGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFK-T 259 (288)
Q Consensus 181 ~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~-~ 259 (288)
+...|.|.+||...+ ..+..+..|.++|..++|-|........|++-..-.+|.+|+....+..|.. ... .
T Consensus 85 aD~~GrIil~d~~~~----s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~----~ys~~ 156 (1062)
T KOG1912|consen 85 ADISGRIILVDFVLA----SVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKY----DYSHE 156 (1062)
T ss_pred ccccCcEEEEEehhh----hhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeecc----ccCCc
Confidence 888899999998765 2333557788899999999865333457888888889999988765433321 122 2
Q ss_pred CeEEEEeec-CCCEEEEEeCCCcEEE
Q 036510 260 PVYRVSWSL-TGNILAVADGNNNVTL 284 (288)
Q Consensus 260 ~i~~~~~sp-dg~~l~s~~~d~~v~~ 284 (288)
...+..+.| |-+.|..-+..|.|-+
T Consensus 157 iLs~f~~DPfd~rh~~~l~s~g~vl~ 182 (1062)
T KOG1912|consen 157 ILSCFRVDPFDSRHFCVLGSKGFVLS 182 (1062)
T ss_pred ceeeeeeCCCCcceEEEEccCceEEE
Confidence 344467777 5555665555565544
No 313
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.80 E-value=0.0079 Score=53.20 Aligned_cols=180 Identities=10% Similarity=-0.010 Sum_probs=89.2
Q ss_pred CEEEEeeCCCcEEEeecCCCCceEEeEEeecCC--Cce---eEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEe
Q 036510 70 SILASCSFDGTVIIWKEGNSNEWIKDHVFEDHK--SSV---NSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRI 144 (288)
Q Consensus 70 ~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~--~~v---~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~ 144 (288)
..++.++.++.+..+|.+++..... ..+.... ..+ ..+.-.|--.+..+..++.++.++.||.+++.. ....
T Consensus 191 ~~v~~~~~~g~v~ald~~tG~~~W~-~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~--~W~~ 267 (377)
T TIGR03300 191 GGVLVGFAGGKLVALDLQTGQPLWE-QRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRV--LWKR 267 (377)
T ss_pred CEEEEECCCCEEEEEEccCCCEeee-eccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcE--EEee
Confidence 3567778888999989877652111 1111000 000 001001110123456677889999999876531 1111
Q ss_pred eccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCc-ceEEEEecCCCCC
Q 036510 145 DQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTD-WVRDVAWAPNLGL 223 (288)
Q Consensus 145 ~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~-~V~~v~~sp~~~~ 223 (288)
. ... ..... . .+..++.++.|+.+..+|..++. .+.....-.. ...+....
T Consensus 268 ~--~~~-~~~p~---------------~-~~~~vyv~~~~G~l~~~d~~tG~----~~W~~~~~~~~~~ssp~i~----- 319 (377)
T TIGR03300 268 D--ASS-YQGPA---------------V-DDNRLYVTDADGVVVALDRRSGS----ELWKNDELKYRQLTAPAVV----- 319 (377)
T ss_pred c--cCC-ccCce---------------E-eCCEEEEECCCCeEEEEECCCCc----EEEccccccCCccccCEEE-----
Confidence 1 000 00000 0 12456677789999999998763 2221111011 11111111
Q ss_pred CCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEe
Q 036510 224 PKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLW 285 (288)
Q Consensus 224 ~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w 285 (288)
+.+|..++.|+.|.++|....+..+ ....+...+..--.-.+ ..|+.++.||.|..+
T Consensus 320 -g~~l~~~~~~G~l~~~d~~tG~~~~---~~~~~~~~~~~sp~~~~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 320 -GGYLVVGDFEGYLHWLSREDGSFVA---RLKTDGSGIASPPVVVG-DGLLVQTRDGDLYAF 376 (377)
T ss_pred -CCEEEEEeCCCEEEEEECCCCCEEE---EEEcCCCccccCCEEEC-CEEEEEeCCceEEEe
Confidence 3478889999999999976532211 11111212221111123 457788899998776
No 314
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.76 E-value=3.9e-05 Score=71.72 Aligned_cols=195 Identities=15% Similarity=0.200 Sum_probs=117.4
Q ss_pred eeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCC
Q 036510 46 QHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSD 125 (288)
Q Consensus 46 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d 125 (288)
+...++..|+...++++|+-. .+.|+.|+..|.|+++++.++.. ......|..+|+-+.-+.+++ .+|.+.++.
T Consensus 1092 r~w~~frd~~~~fTc~afs~~--~~hL~vG~~~Geik~~nv~sG~~---e~s~ncH~SavT~vePs~dgs-~~Ltsss~S 1165 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGG--TNHLAVGSHAGEIKIFNVSSGSM---EESVNCHQSAVTLVEPSVDGS-TQLTSSSSS 1165 (1516)
T ss_pred ccchhhhccccceeeEEeecC--CceEEeeeccceEEEEEccCccc---cccccccccccccccccCCcc-eeeeecccc
Confidence 345667788999999999854 67999999999999999987642 123456888999887666642 344555555
Q ss_pred C-cEEEEeecCCCCeeeEEeeccCC-CCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeee
Q 036510 126 G-NISVFTARADGGWDTSRIDQAHP-VGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFP 203 (288)
Q Consensus 126 ~-~i~i~d~~~~~~~~~~~~~~~~~-~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 203 (288)
. -..+|+..... +. .|. ..-.++.|+... ..=+.|.......+||+.++....+...
T Consensus 1166 ~PlsaLW~~~s~~--~~-----~Hsf~ed~~vkFsn~~--------------q~r~~gt~~d~a~~YDvqT~~~l~tylt 1224 (1516)
T KOG1832|consen 1166 SPLSALWDASSTG--GP-----RHSFDEDKAVKFSNSL--------------QFRALGTEADDALLYDVQTCSPLQTYLT 1224 (1516)
T ss_pred CchHHHhcccccc--Cc-----cccccccceeehhhhH--------------HHHHhcccccceEEEecccCcHHHHhcC
Confidence 5 45789876522 11 122 123456666543 2223344445678999987632111111
Q ss_pred ccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeecccc--CeEEEEeecCCCEEEEEeCCCc
Q 036510 204 ALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKT--PVYRVSWSLTGNILAVADGNNN 281 (288)
Q Consensus 204 ~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~--~i~~~~~spdg~~l~s~~~d~~ 281 (288)
...+....=+++.|+|.. ++|. .|| .+||++.+. .++.|.. --..=.|+|.|..++.-+.
T Consensus 1225 ~~~~~~y~~n~a~FsP~D----~LIl---ndG--vLWDvR~~~------aIh~FD~ft~~~~G~FHP~g~eVIINSE--- 1286 (1516)
T KOG1832|consen 1225 DTVTSSYSNNLAHFSPCD----TLIL---NDG--VLWDVRIPE------AIHRFDQFTDYGGGGFHPSGNEVIINSE--- 1286 (1516)
T ss_pred cchhhhhhccccccCCCc----ceEe---eCc--eeeeeccHH------HHhhhhhheecccccccCCCceEEeech---
Confidence 111222234778999963 3332 344 379988642 1222211 1123479999999887764
Q ss_pred EEEeEc
Q 036510 282 VTLWEE 287 (288)
Q Consensus 282 v~~w~~ 287 (288)
|||+
T Consensus 1287 --IwD~ 1290 (1516)
T KOG1832|consen 1287 --IWDM 1290 (1516)
T ss_pred --hhhh
Confidence 6775
No 315
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.63 E-value=0.011 Score=57.66 Aligned_cols=199 Identities=17% Similarity=0.348 Sum_probs=109.5
Q ss_pred ccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEee-
Q 036510 55 KGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTA- 133 (288)
Q Consensus 55 ~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~- 133 (288)
.+.|.++.|..+ ..-++.+..+|.|.+-|..+.. + .....-.+.|.+++|+||+ .+++-.+..+++.+.+-
T Consensus 68 d~~i~s~~fl~d--~~~i~v~~~~G~iilvd~et~~-~---eivg~vd~GI~aaswS~De--e~l~liT~~~tll~mT~~ 139 (1265)
T KOG1920|consen 68 DDEIVSVQFLAD--TNSICVITALGDIILVDPETLE-L---EIVGNVDNGISAASWSPDE--ELLALITGRQTLLFMTKD 139 (1265)
T ss_pred CcceEEEEEecc--cceEEEEecCCcEEEEcccccc-e---eeeeeccCceEEEeecCCC--cEEEEEeCCcEEEEEecc
Confidence 367888888654 5667777888999988776532 2 2223345689999999995 44444444566654322
Q ss_pred -c--CCCC---------------eee--EEee--cc------------------CCCCeeEEEeCCCCCCCceecccccC
Q 036510 134 -R--ADGG---------------WDT--SRID--QA------------------HPVGVTSVSWAPSTAPGALVGSGFLD 173 (288)
Q Consensus 134 -~--~~~~---------------~~~--~~~~--~~------------------~~~~v~~i~~~p~~~~~~~~~~~~~~ 173 (288)
. .... |.. .+.. .+ -.+.-++|.|.-++
T Consensus 140 f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg------------ 207 (1265)
T KOG1920|consen 140 FEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDG------------ 207 (1265)
T ss_pred ccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCC------------
Confidence 1 0000 100 0000 00 00112235554443
Q ss_pred CCceeEEe----ecC-CcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEE---eCCCcEEEEEeecC
Q 036510 174 PVQKLCSG----GCD-NTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASA---SEDGKVIIWTVARE 245 (288)
Q Consensus 174 ~~~~l~s~----~~d-~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~---s~D~~i~iw~~~~~ 245 (288)
.++++. ..+ +.|++||-+... ..... -...--.+++|-|. +..+++- .+|+.|.++.-+-
T Consensus 208 --~~fAVs~~~~~~~~RkirV~drEg~L---ns~se--~~~~l~~~LsWkPs----gs~iA~iq~~~sd~~IvffErNG- 275 (1265)
T KOG1920|consen 208 --EYFAVSFVESETGTRKIRVYDREGAL---NSTSE--PVEGLQHSLSWKPS----GSLIAAIQCKTSDSDIVFFERNG- 275 (1265)
T ss_pred --cEEEEEEEeccCCceeEEEecccchh---hcccC--cccccccceeecCC----CCeEeeeeecCCCCcEEEEecCC-
Confidence 455542 234 889999976321 11110 01111257899996 3567765 3466899986431
Q ss_pred CCcccceEeecc---ccCeEEEEeecCCCEEEE---EeCCCcEEEeEc
Q 036510 246 GDQWEGKVLHDF---KTPVYRVSWSLTGNILAV---ADGNNNVTLWEE 287 (288)
Q Consensus 246 ~~~~~~~~~~~~---~~~i~~~~~spdg~~l~s---~~~d~~v~~w~~ 287 (288)
...+...-.+ ..++..++|+.++..||+ ......|+||-+
T Consensus 276 --L~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~ 321 (1265)
T KOG1920|consen 276 --LRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTT 321 (1265)
T ss_pred --ccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEe
Confidence 1111111111 234889999999999998 445556999964
No 316
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.61 E-value=0.028 Score=46.51 Aligned_cols=186 Identities=19% Similarity=0.189 Sum_probs=100.3
Q ss_pred eEEEEEc-CCCCEEEEeeCCCcEEEEEeCCCCceeeEEEe--c-cccCeEEEEecCCCCCCEEEEeeCC--------CcE
Q 036510 14 VHDVAMD-YYGKRLATASSDYSIKIIGVGNNTSQHLAKLS--G-HKGAVWEVAWAHPKFGSILASCSFD--------GTV 81 (288)
Q Consensus 14 v~~~~~s-~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~--~-h~~~v~~~~~~~~~~~~~l~s~s~d--------~~v 81 (288)
..++.+. ++|++++ +..++ +.++|...+..+.+.... . .....+.+++.++ |++.++.... |.+
T Consensus 42 ~~G~~~~~~~g~l~v-~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~--G~ly~t~~~~~~~~~~~~g~v 117 (246)
T PF08450_consen 42 PNGMAFDRPDGRLYV-ADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPD--GNLYVTDSGGGGASGIDPGSV 117 (246)
T ss_dssp EEEEEEECTTSEEEE-EETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TT--S-EEEEEECCBCTTCGGSEEE
T ss_pred CceEEEEccCCEEEE-EEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCC--CCEEEEecCCCccccccccce
Confidence 4566777 6765554 44444 455576554444454442 1 3456788998764 8888876654 345
Q ss_pred EEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCC-eeeEEee-ccCC--CCeeEEEe
Q 036510 82 IIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGG-WDTSRID-QAHP--VGVTSVSW 157 (288)
Q Consensus 82 ~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~-~~~~~~~-~~~~--~~v~~i~~ 157 (288)
..++.. ... ..+.......+.++|+|++ ..++++-+..+.|..|++..... +...+.. .... .....+..
T Consensus 118 ~~~~~~--~~~---~~~~~~~~~pNGi~~s~dg-~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~v 191 (246)
T PF08450_consen 118 YRIDPD--GKV---TVVADGLGFPNGIAFSPDG-KTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAV 191 (246)
T ss_dssp EEEETT--SEE---EEEEEEESSEEEEEEETTS-SEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEE
T ss_pred EEECCC--CeE---EEEecCcccccceEECCcc-hheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceE
Confidence 445443 221 1122223457899999984 34455667888898898865432 3222211 1111 11334555
Q ss_pred CCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEec-CCCCCCCcEEEEE
Q 036510 158 APSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWA-PNLGLPKSTIASA 231 (288)
Q Consensus 158 ~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~s-p~~~~~~~~l~s~ 231 (288)
.+++ ++.++.-..+.|.++|.. +. .+..+......+.+++|. |+. ..+++|.
T Consensus 192 D~~G--------------~l~va~~~~~~I~~~~p~-G~----~~~~i~~p~~~~t~~~fgg~~~---~~L~vTt 244 (246)
T PF08450_consen 192 DSDG--------------NLWVADWGGGRIVVFDPD-GK----LLREIELPVPRPTNCAFGGPDG---KTLYVTT 244 (246)
T ss_dssp BTTS---------------EEEEEETTTEEEEEETT-SC----EEEEEE-SSSSEEEEEEESTTS---SEEEEEE
T ss_pred cCCC--------------CEEEEEcCCCEEEEECCC-cc----EEEEEcCCCCCEEEEEEECCCC---CEEEEEe
Confidence 5543 556665567788888865 42 222333233367888984 442 3455554
No 317
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.53 E-value=0.081 Score=51.94 Aligned_cols=204 Identities=17% Similarity=0.312 Sum_probs=114.7
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecC---
Q 036510 11 EDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEG--- 87 (288)
Q Consensus 11 ~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~--- 87 (288)
.+.|.++.|-.++..++-+..+|.|-+-|......+.+.. =...|.+.+|+++ +++++-...++++.+-.-.
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~---vd~GI~aaswS~D--ee~l~liT~~~tll~mT~~f~~ 142 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGN---VDNGISAASWSPD--EELLALITGRQTLLFMTKDFEP 142 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceeeeee---ccCceEEEeecCC--CcEEEEEeCCcEEEEEeccccc
Confidence 3688899998888888888889998887764333333333 3567999999976 7888888888888765320
Q ss_pred -CCC---------------ceEE-eEEeec------------CC---------CceeEEEeccCCCCeEEEE-----EeC
Q 036510 88 -NSN---------------EWIK-DHVFED------------HK---------SSVNSIDWAPHELGLCLAC-----GSS 124 (288)
Q Consensus 88 -~~~---------------~~~~-~~~~~~------------h~---------~~v~~l~~~p~~~~~~l~s-----g~~ 124 (288)
... .|.. -..+.+ +. +.=.++.|-.| +.++|+ ...
T Consensus 143 i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgD--g~~fAVs~~~~~~~ 220 (1265)
T KOG1920|consen 143 IAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGD--GEYFAVSFVESETG 220 (1265)
T ss_pred hhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccC--CcEEEEEEEeccCC
Confidence 000 0100 001110 00 11134777665 666665 333
Q ss_pred CCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEe---ecCCcEEEEEEeCCceeeee
Q 036510 125 DGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSG---GCDNTVKVWKLYNGIWKMDC 201 (288)
Q Consensus 125 d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~---~~d~~i~iwd~~~~~~~~~~ 201 (288)
.++|++||-. +.++... +.-...-.+++|-|.+ ..+++- +.|+.|.++.- +|...-+.
T Consensus 221 ~RkirV~drE--g~Lns~s--e~~~~l~~~LsWkPsg--------------s~iA~iq~~~sd~~IvffEr-NGL~hg~f 281 (1265)
T KOG1920|consen 221 TRKIRVYDRE--GALNSTS--EPVEGLQHSLSWKPSG--------------SLIAAIQCKTSDSDIVFFER-NGLRHGEF 281 (1265)
T ss_pred ceeEEEeccc--chhhccc--CcccccccceeecCCC--------------CeEeeeeecCCCCcEEEEec-CCcccccc
Confidence 3799999865 2222211 1112234589999976 333332 33556877763 44221111
Q ss_pred eeccccCCcceEEEEecCCCCCCCcEEEE---EeCCCcEEEEEeec
Q 036510 202 FPALQMHTDWVRDVAWAPNLGLPKSTIAS---ASEDGKVIIWTVAR 244 (288)
Q Consensus 202 ~~~~~~h~~~V~~v~~sp~~~~~~~~l~s---~s~D~~i~iw~~~~ 244 (288)
.-.+......|..++|+.++ ..||. ......|++|-...
T Consensus 282 ~l~~p~de~~ve~L~Wns~s----diLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 282 VLPFPLDEKEVEELAWNSNS----DILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred ccCCcccccchheeeecCCC----CceeeeecccccceEEEEEecC
Confidence 00111112238999999985 34544 34444599997653
No 318
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.48 E-value=0.06 Score=47.91 Aligned_cols=258 Identities=15% Similarity=0.163 Sum_probs=124.0
Q ss_pred ceEEEEEcCCCCEEEEeeCCCcEEEEEeCC----C--------------------Cc-----------------eeeEEE
Q 036510 13 TVHDVAMDYYGKRLATASSDYSIKIIGVGN----N--------------------TS-----------------QHLAKL 51 (288)
Q Consensus 13 ~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~----~--------------------~~-----------------~~~~~~ 51 (288)
.|..++|.++..-|+.|-..|.|-||.+.. + .. ....-+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 578889998877888899999998886521 0 00 011223
Q ss_pred eccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeec------CCCceeEEEecc---CCC---CeEE
Q 036510 52 SGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFED------HKSSVNSIDWAP---HEL---GLCL 119 (288)
Q Consensus 52 ~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~------h~~~v~~l~~~p---~~~---~~~l 119 (288)
....++|.+++-|. =..++.|..+|.+.|.|++.. ..+....+.. ....++++.|.. .++ ..++
T Consensus 83 ~~~~g~vtal~~S~---iGFvaigy~~G~l~viD~RGP-avI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L 158 (395)
T PF08596_consen 83 DAKQGPVTALKNSD---IGFVAIGYESGSLVVIDLRGP-AVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICL 158 (395)
T ss_dssp ---S-SEEEEEE-B---TSEEEEEETTSEEEEEETTTT-EEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEE
T ss_pred eccCCcEeEEecCC---CcEEEEEecCCcEEEEECCCC-eEEeeccccccccccccccCeeEEEEEEEecCCCcccceEE
Confidence 34578899999763 458899999999999999753 2222222222 234578888863 222 2578
Q ss_pred EEEeCCCcEEEEeec--CCCCeeeEEe--eccCCCCeeEEE-eCCCCCCCceecc----cccC---CCceeEEeecCCcE
Q 036510 120 ACGSSDGNISVFTAR--ADGGWDTSRI--DQAHPVGVTSVS-WAPSTAPGALVGS----GFLD---PVQKLCSGGCDNTV 187 (288)
Q Consensus 120 ~sg~~d~~i~i~d~~--~~~~~~~~~~--~~~~~~~v~~i~-~~p~~~~~~~~~~----~~~~---~~~~l~s~~~d~~i 187 (288)
.+|...|.+.+|.+. .++.+..... ...+...+..|. ++.+......... ++.. ...+++.++ +..+
T Consensus 159 ~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS-e~~i 237 (395)
T PF08596_consen 159 LVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS-ESDI 237 (395)
T ss_dssp EEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE--SSEE
T ss_pred EEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc-ccce
Confidence 899999999999875 2233332111 123555666654 4333322111110 1111 112344433 6779
Q ss_pred EEEEEeCCceeeeeeeccccCCcceEEEEecCCC-CCCCcEEEEEeCCCcEEEEEeecCCCcccceEeecc-ccCeEEEE
Q 036510 188 KVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNL-GLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDF-KTPVYRVS 265 (288)
Q Consensus 188 ~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~-~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~-~~~i~~~~ 265 (288)
|++...+.. ..+..-...-.+..+.+-+-. ...+..|++-..||.|+++.+=.-++.......... ...+....
T Consensus 238 rv~~~~~~k----~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ss 313 (395)
T PF08596_consen 238 RVFKPPKSK----GAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSS 313 (395)
T ss_dssp EEE-TT-------EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-E
T ss_pred EEEeCCCCc----ccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccE
Confidence 998765432 111111111123334443200 001356888889999999986321110000000000 11234577
Q ss_pred eecCCCEEEEEeCC
Q 036510 266 WSLTGNILAVADGN 279 (288)
Q Consensus 266 ~spdg~~l~s~~~d 279 (288)
++++|..++..+..
T Consensus 314 is~~Gdi~~~~gps 327 (395)
T PF08596_consen 314 ISRNGDIFYWTGPS 327 (395)
T ss_dssp E-TTS-EEEE-SSS
T ss_pred ECCCCCEEEEeCcc
Confidence 89999988877543
No 319
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.48 E-value=0.00051 Score=37.76 Aligned_cols=38 Identities=45% Similarity=0.712 Sum_probs=32.0
Q ss_pred eeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEee
Q 036510 46 QHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK 85 (288)
Q Consensus 46 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd 85 (288)
.....+..|...|.++.|.+. +..+++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPD--GKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCC--CCEEEEecCCCeEEEcC
Confidence 345667789999999999764 58999999999999995
No 320
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.47 E-value=0.00017 Score=39.88 Aligned_cols=35 Identities=43% Similarity=0.474 Sum_probs=31.0
Q ss_pred ccccccccceEEEEEcCCCCEEEEeeCCCcEEEEE
Q 036510 5 KIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIG 39 (288)
Q Consensus 5 ~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd 39 (288)
..+.+|...|.+++|.++++++++++.|+.+++|+
T Consensus 6 ~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 6 KTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34457899999999999999999999999999985
No 321
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.42 E-value=0.022 Score=40.55 Aligned_cols=102 Identities=22% Similarity=0.320 Sum_probs=65.3
Q ss_pred eEEEEEcC---CC-CEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCC
Q 036510 14 VHDVAMDY---YG-KRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNS 89 (288)
Q Consensus 14 v~~~~~s~---~g-~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~ 89 (288)
|.++++.+ +| +.|+.||.|..||+|+-+ +.+..+.. ++.|..++-.. +..|+.+.++|+|-+|+.. .
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~----e~~~Ei~e-~~~v~~L~~~~---~~~F~Y~l~NGTVGvY~~~-~ 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD----EIVAEITE-TDKVTSLCSLG---GGRFAYALANGTVGVYDRS-Q 72 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC----cEEEEEec-ccceEEEEEcC---CCEEEEEecCCEEEEEeCc-c
Confidence 56676543 44 679999999999999743 34555554 45677787653 4789999999999999763 3
Q ss_pred CceEEeEEeecCCCceeEEEec-cCCCC-eEEEEEeCCCcEE
Q 036510 90 NEWIKDHVFEDHKSSVNSIDWA-PHELG-LCLACGSSDGNIS 129 (288)
Q Consensus 90 ~~~~~~~~~~~h~~~v~~l~~~-p~~~~-~~l~sg~~d~~i~ 129 (288)
..|. .+. +..+.++.+. .+..+ .-|++|-.+|.|.
T Consensus 73 RlWR----iKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 73 RLWR----IKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeee----ecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 3332 221 2346666543 22222 2477776666653
No 322
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.39 E-value=0.054 Score=44.28 Aligned_cols=178 Identities=16% Similarity=0.192 Sum_probs=91.7
Q ss_pred CCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccC
Q 036510 69 GSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAH 148 (288)
Q Consensus 69 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~ 148 (288)
+..++.++.++.+..||..+++. ...+.. ...+....... +..++.+..++.|+.+|.+++.. ........
T Consensus 36 ~~~v~~~~~~~~l~~~d~~tG~~---~W~~~~-~~~~~~~~~~~---~~~v~v~~~~~~l~~~d~~tG~~--~W~~~~~~ 106 (238)
T PF13360_consen 36 GGRVYVASGDGNLYALDAKTGKV---LWRFDL-PGPISGAPVVD---GGRVYVGTSDGSLYALDAKTGKV--LWSIYLTS 106 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSEE---EEEEEC-SSCGGSGEEEE---TTEEEEEETTSEEEEEETTTSCE--EEEEEE-S
T ss_pred CCEEEEEcCCCEEEEEECCCCCE---EEEeec-cccccceeeec---ccccccccceeeeEecccCCcce--eeeecccc
Confidence 56777778999999999877752 222322 12211111111 22345566788899999776542 22211111
Q ss_pred -CC-C---eeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcc-----------e
Q 036510 149 -PV-G---VTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDW-----------V 212 (288)
Q Consensus 149 -~~-~---v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~-----------V 212 (288)
+. . ....... +..++.+..++.|..+|+++|. .+......... .
T Consensus 107 ~~~~~~~~~~~~~~~----------------~~~~~~~~~~g~l~~~d~~tG~----~~w~~~~~~~~~~~~~~~~~~~~ 166 (238)
T PF13360_consen 107 SPPAGVRSSSSPAVD----------------GDRLYVGTSSGKLVALDPKTGK----LLWKYPVGEPRGSSPISSFSDIN 166 (238)
T ss_dssp SCTCSTB--SEEEEE----------------TTEEEEEETCSEEEEEETTTTE----EEEEEESSTT-SS--EEEETTEE
T ss_pred ccccccccccCceEe----------------cCEEEEEeccCcEEEEecCCCc----EEEEeecCCCCCCcceeeecccc
Confidence 00 0 0111111 2556777778899999988873 22222111111 1
Q ss_pred EEEEecCCCCCCCcEEEEEeCCCc-EEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEcC
Q 036510 213 RDVAWAPNLGLPKSTIASASEDGK-VIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEEA 288 (288)
Q Consensus 213 ~~v~~sp~~~~~~~~l~s~s~D~~-i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~~ 288 (288)
..+.+. + ..+..++.++. +.+ |+......++ ..... +. ....+++..+++++.++.|..||.+
T Consensus 167 ~~~~~~-~-----~~v~~~~~~g~~~~~-d~~tg~~~w~----~~~~~-~~-~~~~~~~~~l~~~~~~~~l~~~d~~ 230 (238)
T PF13360_consen 167 GSPVIS-D-----GRVYVSSGDGRVVAV-DLATGEKLWS----KPISG-IY-SLPSVDGGTLYVTSSDGRLYALDLK 230 (238)
T ss_dssp EEEECC-T-----TEEEEECCTSSEEEE-ETTTTEEEEE----ECSS--EC-ECEECCCTEEEEEETTTEEEEEETT
T ss_pred cceEEE-C-----CEEEEEcCCCeEEEE-ECCCCCEEEE----ecCCC-cc-CCceeeCCEEEEEeCCCEEEEEECC
Confidence 222222 1 25666666664 444 7654321111 01111 11 1255788888888899999999953
No 323
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.35 E-value=0.064 Score=44.36 Aligned_cols=225 Identities=10% Similarity=0.067 Sum_probs=121.7
Q ss_pred EEEEcC-CCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEE
Q 036510 16 DVAMDY-YGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIK 94 (288)
Q Consensus 16 ~~~~s~-~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~ 94 (288)
+..|.+ +|+++++--..+.|.-|+..... ...+.... ...+.+..+ ++. |+.+..++. .++|..++. ...
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~---~~~~~~~~--~~G~~~~~~-~g~-l~v~~~~~~-~~~d~~~g~-~~~ 74 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGE---VEVIDLPG--PNGMAFDRP-DGR-LYVADSGGI-AVVDPDTGK-VTV 74 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTE---EEEEESSS--EEEEEEECT-TSE-EEEEETTCE-EEEETTTTE-EEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCe---EEEEecCC--CceEEEEcc-CCE-EEEEEcCce-EEEecCCCc-EEE
Confidence 456787 67777777678888888765432 22222222 567777633 344 444455444 455876653 222
Q ss_pred eEEee--c-CCCceeEEEeccCCCCeEEEEEeCC--------CcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCC
Q 036510 95 DHVFE--D-HKSSVNSIDWAPHELGLCLACGSSD--------GNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAP 163 (288)
Q Consensus 95 ~~~~~--~-h~~~v~~l~~~p~~~~~~l~sg~~d--------~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~ 163 (288)
..... . .....+.+++.|+ +.+.++.... +.|..++.. ..... .... -....-|.|+|++.
T Consensus 75 ~~~~~~~~~~~~~~ND~~vd~~--G~ly~t~~~~~~~~~~~~g~v~~~~~~--~~~~~--~~~~-~~~pNGi~~s~dg~- 146 (246)
T PF08450_consen 75 LADLPDGGVPFNRPNDVAVDPD--GNLYVTDSGGGGASGIDPGSVYRIDPD--GKVTV--VADG-LGFPNGIAFSPDGK- 146 (246)
T ss_dssp EEEEETTCSCTEEEEEEEE-TT--S-EEEEEECCBCTTCGGSEEEEEEETT--SEEEE--EEEE-ESSEEEEEEETTSS-
T ss_pred EeeccCCCcccCCCceEEEcCC--CCEEEEecCCCccccccccceEEECCC--CeEEE--EecC-cccccceEECCcch-
Confidence 22221 1 3346778888887 5555544332 234444433 22211 1111 12356788998872
Q ss_pred CceecccccCCCceeEEeecCCcEEEEEEeCCce---eeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEE
Q 036510 164 GALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIW---KMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIW 240 (288)
Q Consensus 164 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw 240 (288)
.++++-+..+.|..+|+..... ..+....+..-......+++..+ +++.++.-..+.|.++
T Consensus 147 ------------~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~----G~l~va~~~~~~I~~~ 210 (246)
T PF08450_consen 147 ------------TLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSD----GNLWVADWGGGRIVVF 210 (246)
T ss_dssp ------------EEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTT----S-EEEEEETTTEEEEE
T ss_pred ------------heeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCC----CCEEEEEcCCCEEEEE
Confidence 3455777788898899864321 11222222322233567888776 4667777778899999
Q ss_pred EeecCCCcccceEeeccccCeEEEEee-cCCCEEEEEe
Q 036510 241 TVAREGDQWEGKVLHDFKTPVYRVSWS-LTGNILAVAD 277 (288)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~i~~~~~s-pdg~~l~s~~ 277 (288)
+.+- .. ...+.-....+++++|. |+.+.|.+.+
T Consensus 211 ~p~G--~~--~~~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 211 DPDG--KL--LREIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp ETTS--CE--EEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred CCCc--cE--EEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 8651 11 12222223478999995 7777666554
No 324
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.34 E-value=0.0067 Score=57.14 Aligned_cols=118 Identities=20% Similarity=0.251 Sum_probs=80.9
Q ss_pred cccccccceEE-EEEcCCCCEEEEeeC----CCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCc
Q 036510 6 IETGHEDTVHD-VAMDYYGKRLATASS----DYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGT 80 (288)
Q Consensus 6 ~~~~h~~~v~~-~~~s~~g~~l~s~~~----d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~ 80 (288)
+...-.++|.. ++|.|...+++.++- .|+|.||--.++. ..-.++.-| +.++||.|. .-+|+.|..-|.
T Consensus 9 IE~~Dsdavsti~SWHPsePlfAVA~fS~er~GSVtIfadtGEP-qr~Vt~P~h---atSLCWHpe--~~vLa~gwe~g~ 82 (1416)
T KOG3617|consen 9 IEFLDSDAVSTISSWHPSEPLFAVASFSPERGGSVTIFADTGEP-QRDVTYPVH---ATSLCWHPE--EFVLAQGWEMGV 82 (1416)
T ss_pred eecccccccccccccCCCCceeEEEEecCCCCceEEEEecCCCC-Cccccccee---hhhhccChH--HHHHhhccccce
Confidence 33334455555 468898888888774 4788888543332 122222333 456999542 567889999999
Q ss_pred EEEeecCCCCceEEeEE-eecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecC
Q 036510 81 VIIWKEGNSNEWIKDHV-FEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARA 135 (288)
Q Consensus 81 v~iwd~~~~~~~~~~~~-~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~ 135 (288)
+.+|...+.. .++ ...|..+|..+.|+|+ |..+.++..-|.+.+|....
T Consensus 83 ~~v~~~~~~e----~htv~~th~a~i~~l~wS~~--G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 83 SDVQKTNTTE----THTVVETHPAPIQGLDWSHD--GTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred eEEEecCCce----eeeeccCCCCCceeEEecCC--CCeEEEcCCCceeEEEEeee
Confidence 9999764432 233 3468999999999998 67899999999999997653
No 325
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.28 E-value=0.038 Score=52.20 Aligned_cols=190 Identities=12% Similarity=0.085 Sum_probs=106.3
Q ss_pred CCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCc-eeEEEeccCCCCeEEEEEeCCC-----cEEEEeecCCCCeeeE
Q 036510 69 GSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSS-VNSIDWAPHELGLCLACGSSDG-----NISVFTARADGGWDTS 142 (288)
Q Consensus 69 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~-v~~l~~~p~~~~~~l~sg~~d~-----~i~i~d~~~~~~~~~~ 142 (288)
+..++.|+++|.|-+.+..-. ..+.+..+... |..+ +.-+. ..+|++-+.|+ .|++|++..-..-..+
T Consensus 35 ~~~vvigt~~G~V~~Ln~s~~----~~~~fqa~~~siv~~L-~~~~~-~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 35 TGSVVIGTADGRVVILNSSFQ----LIRGFQAYEQSIVQFL-YILNK-QNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred CceEEEeeccccEEEecccce----eeehheecchhhhhHh-hcccC-ceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 779999999999988764321 22445555555 3333 23332 23444444443 5899998653211101
Q ss_pred Eee-----cc-----CCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeC-CceeeeeeeccccCCcc
Q 036510 143 RID-----QA-----HPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYN-GIWKMDCFPALQMHTDW 211 (288)
Q Consensus 143 ~~~-----~~-----~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~h~~~ 211 (288)
... -. .+.++.+++.+.+ .+.+|.|=.+|.|.++.=.- ..+..+.... ....++
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~--------------l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~-~~~~~p 173 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSED--------------LKTIVCGFTNGLVICYKGDILRDRGSRQDYS-HRGKEP 173 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEcc--------------ccEEEEEecCcEEEEEcCcchhccccceeee-ccCCCC
Confidence 111 11 1233444444333 36788898999998874211 0001111111 223557
Q ss_pred eEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510 212 VRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE 286 (288)
Q Consensus 212 V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~ 286 (288)
|+.+.|..+. +.++-+..-..|.+|.++.+. + ....+..++.++.+..|++....|++++ +.-+.+|+
T Consensus 174 ITgL~~~~d~----~s~lFv~Tt~~V~~y~l~gr~-p-~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~ 241 (933)
T KOG2114|consen 174 ITGLALRSDG----KSVLFVATTEQVMLYSLSGRT-P-SLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYD 241 (933)
T ss_pred ceeeEEecCC----ceeEEEEecceeEEEEecCCC-c-ceeeeccCCccceeeecCCCCccEEEec-CceEEEEc
Confidence 9999998774 332334445579999988432 2 2233455667889999998877666664 35566665
No 326
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.16 E-value=0.0031 Score=57.89 Aligned_cols=103 Identities=18% Similarity=0.198 Sum_probs=71.2
Q ss_pred ceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEe-
Q 036510 176 QKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVL- 254 (288)
Q Consensus 176 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~- 254 (288)
.+++.|+.-|.+.+++-..+. .+ .....+-...+.....|++ ..++|+|+..+.|.++-++... +.....+
T Consensus 46 ~~l~~GsS~G~lyl~~R~~~~-~~--~~~~~~~~~~~~~~~vs~~----e~lvAagt~~g~V~v~ql~~~~-p~~~~~~t 117 (726)
T KOG3621|consen 46 EYLAMGSSAGSVYLYNRHTGE-MR--KLKNEGATGITCVRSVSSV----EYLVAAGTASGRVSVFQLNKEL-PRDLDYVT 117 (726)
T ss_pred ceEEEecccceEEEEecCchh-hh--cccccCccceEEEEEecch----hHhhhhhcCCceEEeehhhccC-CCcceeec
Confidence 678999999999999876552 11 1122233333555566775 3578888888899998887643 2222222
Q ss_pred ---eccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510 255 ---HDFKTPVYRVSWSLTGNILAVADGNNNVTLWE 286 (288)
Q Consensus 255 ---~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~ 286 (288)
+.|+..|++++|++||..+.+|++-|+|.+-.
T Consensus 118 ~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~ 152 (726)
T KOG3621|consen 118 PCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTE 152 (726)
T ss_pred cccccCCceEEEEEecccccEEeecCCCceEEEEE
Confidence 22456899999999999999999999987643
No 327
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.97 E-value=0.06 Score=38.33 Aligned_cols=90 Identities=23% Similarity=0.260 Sum_probs=57.3
Q ss_pred ceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEee
Q 036510 176 QKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLH 255 (288)
Q Consensus 176 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~ 255 (288)
+.|+.|+.|..||+|+-.+ .+.++.. .+.|.++.-... .+|+.+..+|+|-+|+-... .|..+.
T Consensus 16 ~eLlvGs~D~~IRvf~~~e------~~~Ei~e-~~~v~~L~~~~~-----~~F~Y~l~NGTVGvY~~~~R--lWRiKS-- 79 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKGDE------IVAEITE-TDKVTSLCSLGG-----GRFAYALANGTVGVYDRSQR--LWRIKS-- 79 (111)
T ss_pred ceEEEecCCcEEEEEeCCc------EEEEEec-ccceEEEEEcCC-----CEEEEEecCCEEEEEeCcce--eeeecc--
Confidence 6799999999999998543 2333332 234666665543 57999999999999975432 232221
Q ss_pred ccccCeEEEEee---cCC-CEEEEEeCCCcEE
Q 036510 256 DFKTPVYRVSWS---LTG-NILAVADGNNNVT 283 (288)
Q Consensus 256 ~~~~~i~~~~~s---pdg-~~l~s~~~d~~v~ 283 (288)
+..++++.+. -|| ..|++|=++|.|-
T Consensus 80 --K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 80 --KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred --CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 2234454433 334 3688998888874
No 328
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.94 E-value=0.052 Score=52.02 Aligned_cols=147 Identities=13% Similarity=0.091 Sum_probs=84.4
Q ss_pred eEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCc
Q 036510 117 LCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGI 196 (288)
Q Consensus 117 ~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 196 (288)
.+|......+.|+-.|+.++.....+.... ..+|. .+.|+..-+ .+.+.+ ...|-.++.+..||.|-..
T Consensus 495 mil~~~~~~~~ly~mDLe~GKVV~eW~~~~--~~~v~--~~~p~~K~a------qlt~e~-tflGls~n~lfriDpR~~~ 563 (794)
T PF08553_consen 495 MILLDPNNPNKLYKMDLERGKVVEEWKVHD--DIPVV--DIAPDSKFA------QLTNEQ-TFLGLSDNSLFRIDPRLSG 563 (794)
T ss_pred eEeecCCCCCceEEEecCCCcEEEEeecCC--Cccee--Eeccccccc------ccCCCc-eEEEECCCceEEeccCCCC
Confidence 344444556777777877665433333211 12233 344543211 112222 3345567889999998642
Q ss_pred eeeeeeecccc----CCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCE
Q 036510 197 WKMDCFPALQM----HTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNI 272 (288)
Q Consensus 197 ~~~~~~~~~~~----h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~ 272 (288)
. +++.. .. ....-.|++-..+ .+||.||.+|.||+||--. ...++.+-+.+.||..+.-+.||++
T Consensus 564 ~--k~v~~-~~k~Y~~~~~Fs~~aTt~~-----G~iavgs~~G~IRLyd~~g---~~AKT~lp~lG~pI~~iDvt~DGkw 632 (794)
T PF08553_consen 564 N--KLVDS-QSKQYSSKNNFSCFATTED-----GYIAVGSNKGDIRLYDRLG---KRAKTALPGLGDPIIGIDVTADGKW 632 (794)
T ss_pred C--ceeec-cccccccCCCceEEEecCC-----ceEEEEeCCCcEEeecccc---hhhhhcCCCCCCCeeEEEecCCCcE
Confidence 1 22211 11 1222455554443 4899999999999998431 2234455567899999999999999
Q ss_pred EEEEeCCCcEEEeE
Q 036510 273 LAVADGNNNVTLWE 286 (288)
Q Consensus 273 l~s~~~d~~v~~w~ 286 (288)
++..+. .-+-|.+
T Consensus 633 ilaTc~-tyLlLi~ 645 (794)
T PF08553_consen 633 ILATCK-TYLLLID 645 (794)
T ss_pred EEEeec-ceEEEEE
Confidence 876653 4454554
No 329
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=96.93 E-value=0.21 Score=42.47 Aligned_cols=160 Identities=13% Similarity=0.144 Sum_probs=87.2
Q ss_pred EEEcCCCCEEEEeeCC-----CcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEe----------------
Q 036510 17 VAMDYYGKRLATASSD-----YSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASC---------------- 75 (288)
Q Consensus 17 ~~~s~~g~~l~s~~~d-----~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~---------------- 75 (288)
-.||+||++|.+.=+| |.|-+||.. ...+.+..+..|--.-..+.+.++ ++.|+.+
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~-~~~~ri~E~~s~GIGPHel~l~pD--G~tLvVANGGI~Thpd~GR~kLN 132 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAA-RGYRRIGEFPSHGIGPHELLLMPD--GETLVVANGGIETHPDSGRAKLN 132 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECc-CCcEEEeEecCCCcChhhEEEcCC--CCEEEEEcCCCccCcccCceecC
Confidence 4699999999886544 779999986 345667777766655566777654 6555543
Q ss_pred --eCCCcEEEeecCCCCceEEeEEe--ecCCCceeEEEeccCCCCeEEEEEeCCCcE-----EEEeecCCCCeeeEEee-
Q 036510 76 --SFDGTVIIWKEGNSNEWIKDHVF--EDHKSSVNSIDWAPHELGLCLACGSSDGNI-----SVFTARADGGWDTSRID- 145 (288)
Q Consensus 76 --s~d~~v~iwd~~~~~~~~~~~~~--~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i-----~i~d~~~~~~~~~~~~~- 145 (288)
.++.++..-|..++. ......+ ..|+..|.-+++.++ +.++..+-..+-- -+.-.+.++........
T Consensus 133 l~tM~psL~~ld~~sG~-ll~q~~Lp~~~~~lSiRHLa~~~~--G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~ 209 (305)
T PF07433_consen 133 LDTMQPSLVYLDARSGA-LLEQVELPPDLHQLSIRHLAVDGD--GTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPE 209 (305)
T ss_pred hhhcCCceEEEecCCCc-eeeeeecCccccccceeeEEecCC--CcEEEEEecCCCCCccCCeEEEEcCCCcceeccCCh
Confidence 233333333444433 2222334 347777888888876 4433333222210 01111111111111100
Q ss_pred ---ccCCCCeeEEEeCCCCCCCceecccccCCCcee-EEeecCCcEEEEEEeCCc
Q 036510 146 ---QAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKL-CSGGCDNTVKVWKLYNGI 196 (288)
Q Consensus 146 ---~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~ 196 (288)
.....-+-+|++++++ ..+ +|+=.-+.+.+||..++.
T Consensus 210 ~~~~~l~~Y~gSIa~~~~g--------------~~ia~tsPrGg~~~~~d~~tg~ 250 (305)
T PF07433_consen 210 EQWRRLNGYIGSIAADRDG--------------RLIAVTSPRGGRVAVWDAATGR 250 (305)
T ss_pred HHHHhhCCceEEEEEeCCC--------------CEEEEECCCCCEEEEEECCCCC
Confidence 1122346677777765 344 566566778999998873
No 330
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.89 E-value=0.016 Score=53.52 Aligned_cols=121 Identities=20% Similarity=0.237 Sum_probs=81.6
Q ss_pred cccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCC
Q 036510 10 HEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNS 89 (288)
Q Consensus 10 h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~ 89 (288)
|...|.=-+++..+++|+-|+.-|.+.+|+...+. -.+....+-++.+..+..+. +..++|.|+..|.|.++-+...
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~-~~~~~~~~~~~~~~~~~vs~--~e~lvAagt~~g~V~v~ql~~~ 108 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGE-MRKLKNEGATGITCVRSVSS--VEYLVAAGTASGRVSVFQLNKE 108 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchh-hhcccccCccceEEEEEecc--hhHhhhhhcCCceEEeehhhcc
Confidence 34455445677789999999999999999875432 12333334444455555554 3578888999999999876442
Q ss_pred CceEEeEE---eecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecC
Q 036510 90 NEWIKDHV---FEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARA 135 (288)
Q Consensus 90 ~~~~~~~~---~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~ 135 (288)
........ -..|...|+|+.|+++ +..+.+|...|+|..-.+..
T Consensus 109 ~p~~~~~~t~~d~~~~~rVTal~Ws~~--~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 109 LPRDLDYVTPCDKSHKCRVTALEWSKN--GMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred CCCcceeeccccccCCceEEEEEeccc--ccEEeecCCCceEEEEEech
Confidence 21111111 1237789999999998 67899999999998766654
No 331
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=96.78 E-value=0.32 Score=42.50 Aligned_cols=195 Identities=10% Similarity=0.073 Sum_probs=97.1
Q ss_pred EEEEcCCCCEEEEee-C-CCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceE
Q 036510 16 DVAMDYYGKRLATAS-S-DYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWI 93 (288)
Q Consensus 16 ~~~~s~~g~~l~s~~-~-d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~ 93 (288)
.+.++|||++|+... . +..|-+.|+... +.+..+.--. ...-...+ ...+..-+.||......+...+...
T Consensus 109 ~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~--kvv~ei~vp~-~~~vy~t~----e~~~~~~~~Dg~~~~v~~d~~g~~~ 181 (352)
T TIGR02658 109 MTSLTPDNKTLLFYQFSPSPAVGVVDLEGK--AFVRMMDVPD-CYHIFPTA----NDTFFMHCRDGSLAKVGYGTKGNPK 181 (352)
T ss_pred eEEECCCCCEEEEecCCCCCEEEEEECCCC--cEEEEEeCCC-CcEEEEec----CCccEEEeecCceEEEEecCCCceE
Confidence 567899999988766 3 688999998543 4455444211 11111111 1122233445554443333322111
Q ss_pred EeE--Eeec-----CCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCC-----CeeeEEee----ccCCCCeeEEEe
Q 036510 94 KDH--VFED-----HKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADG-----GWDTSRID----QAHPVGVTSVSW 157 (288)
Q Consensus 94 ~~~--~~~~-----h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~-----~~~~~~~~----~~~~~~v~~i~~ 157 (288)
... .+.. ...+ .|.+.+...++++ ..|+|.+.|+.... .+...... ...+....-+++
T Consensus 182 ~~~~~vf~~~~~~v~~rP----~~~~~dg~~~~vs--~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~ 255 (352)
T TIGR02658 182 IKPTEVFHPEDEYLINHP----AYSNKSGRLVWPT--YTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAY 255 (352)
T ss_pred EeeeeeecCCccccccCC----ceEcCCCcEEEEe--cCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEE
Confidence 100 0111 0112 3344221333333 34999999864322 11111111 112333334666
Q ss_pred CCCCCCCceecccccCCCceeEEee---------cCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCc-E
Q 036510 158 APSTAPGALVGSGFLDPVQKLCSGG---------CDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKS-T 227 (288)
Q Consensus 158 ~p~~~~~~~~~~~~~~~~~~l~s~~---------~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~-~ 227 (288)
+|++. ++++... ..+.|-++|..+.. .+..+.. ...+..+.++||. + +
T Consensus 256 ~~dg~-------------~lyV~~~~~~~~thk~~~~~V~ViD~~t~k----vi~~i~v-G~~~~~iavS~Dg----kp~ 313 (352)
T TIGR02658 256 HRARD-------------RIYLLADQRAKWTHKTASRFLFVVDAKTGK----RLRKIEL-GHEIDSINVSQDA----KPL 313 (352)
T ss_pred cCCCC-------------EEEEEecCCccccccCCCCEEEEEECCCCe----EEEEEeC-CCceeeEEECCCC----CeE
Confidence 66652 2333221 12478899987763 3333321 2257899999985 3 4
Q ss_pred EEEEe-CCCcEEEEEeecC
Q 036510 228 IASAS-EDGKVIIWTVARE 245 (288)
Q Consensus 228 l~s~s-~D~~i~iw~~~~~ 245 (288)
|.+.+ .++.|.+.|....
T Consensus 314 lyvtn~~s~~VsViD~~t~ 332 (352)
T TIGR02658 314 LYALSTGDKTLYIFDAETG 332 (352)
T ss_pred EEEeCCCCCcEEEEECcCC
Confidence 55555 6888999998653
No 332
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.78 E-value=0.21 Score=46.79 Aligned_cols=227 Identities=16% Similarity=0.239 Sum_probs=110.5
Q ss_pred CCCEEEEeeCCC------cEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCC------CcEEEeecCCC
Q 036510 22 YGKRLATASSDY------SIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFD------GTVIIWKEGNS 89 (288)
Q Consensus 22 ~g~~l~s~~~d~------~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d------~~v~iwd~~~~ 89 (288)
.+.+++.||.++ ++.+||........+..+.. ...-.+++.. .+.++++|+.| .++-.||....
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~-~r~~~~~~~~---~~~lYv~GG~~~~~~~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPS-PRCRVGVAVL---NGKLYVVGGYDSGSDRLSSVERYDPRTN 359 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCc-ccccccEEEE---CCEEEEEccccCCCcccceEEEecCCCC
Confidence 356777788773 57777765443333333332 2222344443 26788999988 45667777653
Q ss_pred CceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCC-----cEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCC
Q 036510 90 NEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDG-----NISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPG 164 (288)
Q Consensus 90 ~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~-----~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~ 164 (288)
.|...-.+...+.......+ + +.+.|.||.|| ++.-||.+++ .|.....+.........+.+
T Consensus 360 -~W~~~a~M~~~R~~~~v~~l--~--g~iYavGG~dg~~~l~svE~YDp~~~-~W~~va~m~~~r~~~gv~~~------- 426 (571)
T KOG4441|consen 360 -QWTPVAPMNTKRSDFGVAVL--D--GKLYAVGGFDGEKSLNSVECYDPVTN-KWTPVAPMLTRRSGHGVAVL------- 426 (571)
T ss_pred -ceeccCCccCccccceeEEE--C--CEEEEEeccccccccccEEEecCCCC-cccccCCCCcceeeeEEEEE-------
Confidence 36443333222211111111 1 67788888886 3556666543 34322111100000111111
Q ss_pred ceecccccCCCceeEEeecCC------cEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCc--
Q 036510 165 ALVGSGFLDPVQKLCSGGCDN------TVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGK-- 236 (288)
Q Consensus 165 ~~~~~~~~~~~~~l~s~~~d~------~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~-- 236 (288)
++.+.+.||.++ ++..||..++.|... ..+..-........+. +.+.|.|+.|+.
T Consensus 427 ---------~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~--~~M~~~R~~~g~a~~~------~~iYvvGG~~~~~~ 489 (571)
T KOG4441|consen 427 ---------GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLI--APMNTRRSGFGVAVLN------GKIYVVGGFDGTSA 489 (571)
T ss_pred ---------CCEEEEEcCcCCCccccceEEEEcCCCCceeec--CCcccccccceEEEEC------CEEEEECCccCCCc
Confidence 124566666444 566788888766432 2222111111222221 357778887763
Q ss_pred ---EEEEEeecCCCcccceEeeccccCeEEEEee-cCCCEEEEEeCCC-----cEEEeE
Q 036510 237 ---VIIWTVAREGDQWEGKVLHDFKTPVYRVSWS-LTGNILAVADGNN-----NVTLWE 286 (288)
Q Consensus 237 ---i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~s-pdg~~l~s~~~d~-----~v~~w~ 286 (288)
|..||+...+ | ..+.....+...+... -+++..++|+.|+ +|..||
T Consensus 490 ~~~VE~ydp~~~~--W--~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~yd 544 (571)
T KOG4441|consen 490 LSSVERYDPETNQ--W--TMVAPMTSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYD 544 (571)
T ss_pred cceEEEEcCCCCc--e--eEcccCccccccccEEEECCEEEEEecccCccccceeEEcC
Confidence 6678776543 2 1122111122222222 3677888888775 455554
No 333
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.77 E-value=0.0049 Score=36.75 Aligned_cols=30 Identities=20% Similarity=0.389 Sum_probs=27.5
Q ss_pred ccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510 258 KTPVYRVSWSLTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 258 ~~~i~~~~~spdg~~l~s~~~d~~v~~w~~ 287 (288)
.+.|..++|+|+..+||.|..||.|.|+++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl 40 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL 40 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence 457899999999999999999999999984
No 334
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.72 E-value=0.43 Score=43.15 Aligned_cols=219 Identities=16% Similarity=0.189 Sum_probs=102.8
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCC
Q 036510 11 EDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSN 90 (288)
Q Consensus 11 ~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~ 90 (288)
+-....++++|+|+.++. +.|+...|+.... .+... .+.....+|.. ...+|.-...++|+|+.-....
T Consensus 32 ~~~p~~ls~npngr~v~V-~g~geY~iyt~~~--~r~k~-----~G~g~~~vw~~---~n~yAv~~~~~~I~I~kn~~~~ 100 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLV-CGDGEYEIYTALA--WRNKA-----FGSGLSFVWSS---RNRYAVLESSSTIKIYKNFKNE 100 (443)
T ss_dssp SS--SEEEE-TTSSEEEE-EETTEEEEEETTT--TEEEE-----EEE-SEEEE-T---SSEEEEE-TTS-EEEEETTEE-
T ss_pred CcCCeeEEECCCCCEEEE-EcCCEEEEEEccC--Ccccc-----cCceeEEEEec---CccEEEEECCCeEEEEEcCccc
Confidence 345678899999998877 6677877876321 12221 22234577875 3457777778999997322111
Q ss_pred ceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceeccc
Q 036510 91 EWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSG 170 (288)
Q Consensus 91 ~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~ 170 (288)
. ...+.. ...+..+ .+ |.+|+..+. +.|.+||+.+.... .... . ..|..+.|++++
T Consensus 101 ~---~k~i~~-~~~~~~I--f~---G~LL~~~~~-~~i~~yDw~~~~~i---~~i~-v-~~vk~V~Ws~~g--------- 156 (443)
T PF04053_consen 101 V---VKSIKL-PFSVEKI--FG---GNLLGVKSS-DFICFYDWETGKLI---RRID-V-SAVKYVIWSDDG--------- 156 (443)
T ss_dssp T---T------SS-EEEE--E----SSSEEEEET-TEEEEE-TTT--EE---EEES-S--E-EEEEE-TTS---------
T ss_pred c---ceEEcC-CcccceE--Ec---CcEEEEECC-CCEEEEEhhHccee---eEEe-c-CCCcEEEEECCC---------
Confidence 1 111211 1122333 33 444554443 47999999865322 1111 1 238899999986
Q ss_pred ccCCCceeEEeecCCcEEEEEEeCC---------c-eeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEE
Q 036510 171 FLDPVQKLCSGGCDNTVKVWKLYNG---------I-WKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIW 240 (288)
Q Consensus 171 ~~~~~~~l~s~~~d~~i~iwd~~~~---------~-~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw 240 (288)
.+++-.+ +.++.|++.... . ..++.+++ -...|.+..|..+ .|+-.... .|+-+
T Consensus 157 -----~~val~t-~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E---~~~~IkSg~W~~d------~fiYtT~~-~lkYl 220 (443)
T PF04053_consen 157 -----ELVALVT-KDSIYILKYNLEAVAAIPEEGVEDAFELIHE---ISERIKSGCWVED------CFIYTTSN-HLKYL 220 (443)
T ss_dssp -----SEEEEE--S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEE---E-S--SEEEEETT------EEEEE-TT-EEEEE
T ss_pred -----CEEEEEe-CCeEEEEEecchhcccccccCchhceEEEEE---ecceeEEEEEEcC------EEEEEcCC-eEEEE
Confidence 5555554 457777775321 0 01111111 1233555555442 22222222 33331
Q ss_pred EeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510 241 TVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE 286 (288)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~ 286 (288)
- .+ +...+.....+++=+.+.|+.+.+...+.|+.|..+.
T Consensus 221 --~-~G---e~~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ 260 (443)
T PF04053_consen 221 --V-NG---ETGIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYE 260 (443)
T ss_dssp --E-TT---EEEEEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE
T ss_pred --E-cC---CcceEEEcCCceEEEEEEccCCEEEEEECCCCEEEEE
Confidence 1 11 2234445567888899999888999999999888765
No 335
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=0.0086 Score=54.51 Aligned_cols=69 Identities=20% Similarity=0.432 Sum_probs=52.2
Q ss_pred eEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeE-EEEeecCCCEEEEEeCCCcEEEeEcC
Q 036510 212 VRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVY-RVSWSLTGNILAVADGNNNVTLWEEA 288 (288)
Q Consensus 212 V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~-~~~~spdg~~l~s~~~d~~v~~w~~~ 288 (288)
|.-+.|+|.. .+||.+..+|.|-+..++.. .. -.+.-++.+++ +++|.|||+.||+|=+||+|+|-|.+
T Consensus 23 i~~~ewnP~~----dLiA~~t~~gelli~R~n~q-Rl---wtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve 92 (665)
T KOG4640|consen 23 IKRIEWNPKM----DLIATRTEKGELLIHRLNWQ-RL---WTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVE 92 (665)
T ss_pred eEEEEEcCcc----chhheeccCCcEEEEEeccc-ee---EeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEcc
Confidence 6778999975 47999999999988876521 11 11111344565 99999999999999999999999853
No 336
>PHA02713 hypothetical protein; Provisional
Probab=96.65 E-value=0.13 Score=48.17 Aligned_cols=62 Identities=3% Similarity=0.032 Sum_probs=35.9
Q ss_pred ceeEEeecC------CcEEEEEEeC-CceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCC--cEEEEEeecC
Q 036510 176 QKLCSGGCD------NTVKVWKLYN-GIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDG--KVIIWTVARE 245 (288)
Q Consensus 176 ~~l~s~~~d------~~i~iwd~~~-~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~--~i~iw~~~~~ 245 (288)
...+.||.+ ..+-.||..+ ..|.. +..+.........+.+. +...|.|+.|+ .+..||+...
T Consensus 465 ~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~--~~~m~~~r~~~~~~~~~------~~iyv~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 465 DIYVVCDIKDEKNVKTCIFRYNTNTYNGWEL--ITTTESRLSALHTILHD------NTIMMLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred EEEEEeCCCCCCccceeEEEecCCCCCCeeE--ccccCcccccceeEEEC------CEEEEEeeecceeehhhcCcccc
Confidence 445556553 2456788887 56642 23333333333444432 46788999888 6777777654
No 337
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.50 E-value=0.35 Score=39.40 Aligned_cols=193 Identities=16% Similarity=0.138 Sum_probs=93.4
Q ss_pred CCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeE-EEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEee-
Q 036510 22 YGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVW-EVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFE- 99 (288)
Q Consensus 22 ~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~- 99 (288)
++.+++.++.++.+..+|... ++.+..... ...+. .... .+..++.++.|+.+..+|..+++.........
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~t--G~~~W~~~~-~~~~~~~~~~----~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~ 107 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKT--GKVLWRFDL-PGPISGAPVV----DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSS 107 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTT--SEEEEEEEC-SSCGGSGEEE----ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SS
T ss_pred eCCEEEEEcCCCEEEEEECCC--CCEEEEeec-cccccceeee----cccccccccceeeeEecccCCcceeeeeccccc
Confidence 466777788999999999743 355544443 11111 1111 14556666688899999988876321101111
Q ss_pred -cCC-CceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCce
Q 036510 100 -DHK-SSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQK 177 (288)
Q Consensus 100 -~h~-~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~ 177 (288)
... .......+. +..++.+..++.|..+|.+++... .......+.....+... ........+.++ .
T Consensus 108 ~~~~~~~~~~~~~~----~~~~~~~~~~g~l~~~d~~tG~~~--w~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-~ 175 (238)
T PF13360_consen 108 PPAGVRSSSSPAVD----GDRLYVGTSSGKLVALDPKTGKLL--WKYPVGEPRGSSPISSF-----SDINGSPVISDG-R 175 (238)
T ss_dssp CTCSTB--SEEEEE----TTEEEEEETCSEEEEEETTTTEEE--EEEESSTT-SS--EEEE-----TTEEEEEECCTT-E
T ss_pred cccccccccCceEe----cCEEEEEeccCcEEEEecCCCcEE--EEeecCCCCCCcceeee-----cccccceEEECC-E
Confidence 011 011222222 345667777899999998876421 11111111111111000 000011112222 4
Q ss_pred eEEeecCCc-EEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecC
Q 036510 178 LCSGGCDNT-VKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVARE 245 (288)
Q Consensus 178 l~s~~~d~~-i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~ 245 (288)
+..++.++. +.+ |..++.. ..... ...+... ..+. +..|..++.|+.|..||++..
T Consensus 176 v~~~~~~g~~~~~-d~~tg~~----~w~~~--~~~~~~~-~~~~----~~~l~~~~~~~~l~~~d~~tG 232 (238)
T PF13360_consen 176 VYVSSGDGRVVAV-DLATGEK----LWSKP--ISGIYSL-PSVD----GGTLYVTSSDGRLYALDLKTG 232 (238)
T ss_dssp EEEECCTSSEEEE-ETTTTEE----EEEEC--SS-ECEC-EECC----CTEEEEEETTTEEEEEETTTT
T ss_pred EEEEcCCCeEEEE-ECCCCCE----EEEec--CCCccCC-ceee----CCEEEEEeCCCEEEEEECCCC
Confidence 555555664 555 8877631 11111 1112221 1222 356777779999999998753
No 338
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.50 E-value=0.88 Score=43.96 Aligned_cols=135 Identities=10% Similarity=0.123 Sum_probs=79.5
Q ss_pred CCcEEEEEeCCCCceeeEEEeccccC-eEEEEecCCC-----CCCEEEEeeCCCcEEEeecCCCCceE---EeEEeecCC
Q 036510 32 DYSIKIIGVGNNTSQHLAKLSGHKGA-VWEVAWAHPK-----FGSILASCSFDGTVIIWKEGNSNEWI---KDHVFEDHK 102 (288)
Q Consensus 32 d~~i~lwd~~~~~~~~~~~~~~h~~~-v~~~~~~~~~-----~~~~l~s~s~d~~v~iwd~~~~~~~~---~~~~~~~h~ 102 (288)
...+.-.|+ ++++.+.....|... |..++ ++. .+.....|=.+..+..||++-.+... ..+.+ ...
T Consensus 503 ~~~ly~mDL--e~GKVV~eW~~~~~~~v~~~~--p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y-~~~ 577 (794)
T PF08553_consen 503 PNKLYKMDL--ERGKVVEEWKVHDDIPVVDIA--PDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQY-SSK 577 (794)
T ss_pred CCceEEEec--CCCcEEEEeecCCCcceeEec--ccccccccCCCceEEEECCCceEEeccCCCCCceeecccccc-ccC
Confidence 344444455 455677777777654 66554 221 13344556677888899998643110 11112 233
Q ss_pred CceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEee
Q 036510 103 SSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGG 182 (288)
Q Consensus 103 ~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~ 182 (288)
....|++-..+ | ++|.|+.+|.||+||- .+.. --..+.+...+|..|.-+.++. -+|+ .
T Consensus 578 ~~Fs~~aTt~~--G-~iavgs~~G~IRLyd~-~g~~--AKT~lp~lG~pI~~iDvt~DGk-------------wila--T 636 (794)
T PF08553_consen 578 NNFSCFATTED--G-YIAVGSNKGDIRLYDR-LGKR--AKTALPGLGDPIIGIDVTADGK-------------WILA--T 636 (794)
T ss_pred CCceEEEecCC--c-eEEEEeCCCcEEeecc-cchh--hhhcCCCCCCCeeEEEecCCCc-------------EEEE--e
Confidence 45667765543 3 5899999999999983 2211 1122335567899998888763 1233 3
Q ss_pred cCCcEEEEEE
Q 036510 183 CDNTVKVWKL 192 (288)
Q Consensus 183 ~d~~i~iwd~ 192 (288)
++..+.|++.
T Consensus 637 c~tyLlLi~t 646 (794)
T PF08553_consen 637 CKTYLLLIDT 646 (794)
T ss_pred ecceEEEEEE
Confidence 4677888776
No 339
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.48 E-value=0.0062 Score=57.33 Aligned_cols=68 Identities=22% Similarity=0.441 Sum_probs=53.9
Q ss_pred eEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510 212 VRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE 286 (288)
Q Consensus 212 V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~ 286 (288)
+.+++|+|.. -.|+.|=.-|.+.+|...... .-+....|..+|..+.|||+|..+++++.-|.|++|+
T Consensus 62 atSLCWHpe~----~vLa~gwe~g~~~v~~~~~~e---~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr 129 (1416)
T KOG3617|consen 62 ATSLCWHPEE----FVLAQGWEMGVSDVQKTNTTE---THTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWR 129 (1416)
T ss_pred hhhhccChHH----HHHhhccccceeEEEecCCce---eeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEE
Confidence 4679999973 346666668899999876432 2244456778999999999999999999999999997
No 340
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.025 Score=51.67 Aligned_cols=93 Identities=19% Similarity=0.338 Sum_probs=64.2
Q ss_pred CceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCee-EEEeCCCCCCCceecccccCCCceeEEe
Q 036510 103 SSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVT-SVSWAPSTAPGALVGSGFLDPVQKLCSG 181 (288)
Q Consensus 103 ~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~-~i~~~p~~~~~~~~~~~~~~~~~~l~s~ 181 (288)
..+..+.|+|. -.++|.+..+|.|-++-+. |+..-....++..++ +++|.|++ ++++.|
T Consensus 21 ~~i~~~ewnP~--~dLiA~~t~~gelli~R~n----~qRlwtip~p~~~v~~sL~W~~DG--------------kllaVg 80 (665)
T KOG4640|consen 21 INIKRIEWNPK--MDLIATRTEKGELLIHRLN----WQRLWTIPIPGENVTASLCWRPDG--------------KLLAVG 80 (665)
T ss_pred cceEEEEEcCc--cchhheeccCCcEEEEEec----cceeEeccCCCCccceeeeecCCC--------------CEEEEE
Confidence 45788999997 5678999999988887554 332222233444555 99999997 789999
Q ss_pred ecCCcEEEEEEeCCceeeeeeec-cccCCcceEEEEecC
Q 036510 182 GCDNTVKVWKLYNGIWKMDCFPA-LQMHTDWVRDVAWAP 219 (288)
Q Consensus 182 ~~d~~i~iwd~~~~~~~~~~~~~-~~~h~~~V~~v~~sp 219 (288)
=.||+|+|-|++++.. +.. ...-...|.++-|.|
T Consensus 81 ~kdG~I~L~Dve~~~~----l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 81 FKDGTIRLHDVEKGGR----LVSFLFSVETDISKGIWDR 115 (665)
T ss_pred ecCCeEEEEEccCCCc----eeccccccccchheeeccc
Confidence 9999999999988632 111 112233466777754
No 341
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.37 E-value=0.58 Score=40.42 Aligned_cols=134 Identities=14% Similarity=0.108 Sum_probs=80.4
Q ss_pred CcEEEEeecCC----CCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeee
Q 036510 126 GNISVFTARAD----GGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDC 201 (288)
Q Consensus 126 ~~i~i~d~~~~----~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 201 (288)
|.|.+|++.+. ..+.. ......+.+|+++.-.. ..|+.+ ..+.|.+|++.... .+..
T Consensus 62 Gri~v~~i~~~~~~~~~l~~-i~~~~~~g~V~ai~~~~----------------~~lv~~-~g~~l~v~~l~~~~-~l~~ 122 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKL-IHSTEVKGPVTAICSFN----------------GRLVVA-VGNKLYVYDLDNSK-TLLK 122 (321)
T ss_dssp EEEEEEEECSS-----EEEE-EEEEEESS-EEEEEEET----------------TEEEEE-ETTEEEEEEEETTS-SEEE
T ss_pred cEEEEEEEEcccccceEEEE-EEEEeecCcceEhhhhC----------------CEEEEe-ecCEEEEEEccCcc-cchh
Confidence 78999998763 11111 11223466788775331 234433 35889999998764 1121
Q ss_pred eeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEee-cc-ccCeEEEEeecCCCEEEEEeCC
Q 036510 202 FPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLH-DF-KTPVYRVSWSLTGNILAVADGN 279 (288)
Q Consensus 202 ~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~-~~-~~~i~~~~~spdg~~l~s~~~d 279 (288)
...+..+. .|.++.... .+|+.|...+.+.++..+.... ....+. +. ..+++++.|-+|++.++.++.+
T Consensus 123 ~~~~~~~~-~i~sl~~~~------~~I~vgD~~~sv~~~~~~~~~~--~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~ 193 (321)
T PF03178_consen 123 KAFYDSPF-YITSLSVFK------NYILVGDAMKSVSLLRYDEENN--KLILVARDYQPRWVTAAEFLVDEDTIIVGDKD 193 (321)
T ss_dssp EEEE-BSS-SEEEEEEET------TEEEEEESSSSEEEEEEETTTE---EEEEEEESS-BEEEEEEEE-SSSEEEEEETT
T ss_pred hheecceE-EEEEEeccc------cEEEEEEcccCEEEEEEEccCC--EEEEEEecCCCccEEEEEEecCCcEEEEEcCC
Confidence 22222222 577777654 4788888888888886664211 122222 22 3468999999888899999999
Q ss_pred CcEEEeEc
Q 036510 280 NNVTLWEE 287 (288)
Q Consensus 280 ~~v~~w~~ 287 (288)
|.+.+++.
T Consensus 194 gnl~~l~~ 201 (321)
T PF03178_consen 194 GNLFVLRY 201 (321)
T ss_dssp SEEEEEEE
T ss_pred CeEEEEEE
Confidence 99999873
No 342
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.20 E-value=0.85 Score=40.66 Aligned_cols=174 Identities=15% Similarity=0.182 Sum_probs=87.0
Q ss_pred eecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeec-----cCCCCeeEEEeCCCCCCCceeccccc
Q 036510 98 FEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQ-----AHPVGVTSVSWAPSTAPGALVGSGFL 172 (288)
Q Consensus 98 ~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~-----~~~~~v~~i~~~p~~~~~~~~~~~~~ 172 (288)
+....++|++++.+-- | .+|.|..+|.+.|.|+|-+.-+....+.+ .....++++.|......+.-+.
T Consensus 82 ~~~~~g~vtal~~S~i--G-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~yS---- 154 (395)
T PF08596_consen 82 LDAKQGPVTALKNSDI--G-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYS---- 154 (395)
T ss_dssp E---S-SEEEEEE-BT--S-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSE----
T ss_pred eeccCCcEeEEecCCC--c-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCccc----
Confidence 3345789999997632 4 58889999999999997543222111111 1234577888864321110000
Q ss_pred CCCceeEEeecCCcEEEEEEeC---CceeeeeeeccccCCcceEEEE-ecCCCCC-----------------CCcEEEEE
Q 036510 173 DPVQKLCSGGCDNTVKVWKLYN---GIWKMDCFPALQMHTDWVRDVA-WAPNLGL-----------------PKSTIASA 231 (288)
Q Consensus 173 ~~~~~l~s~~~d~~i~iwd~~~---~~~~~~~~~~~~~h~~~V~~v~-~sp~~~~-----------------~~~~l~s~ 231 (288)
.-.|..|...|.+.+|++.. +.+..+.......+.+.|..+. |+.+.+. .+.+ +..
T Consensus 155 --Si~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~-vVv 231 (395)
T PF08596_consen 155 --SICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGY-VVV 231 (395)
T ss_dssp --EEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EE-EEE
T ss_pred --ceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcE-EEE
Confidence 02466788889999998863 2233333333345666666665 3222110 1233 444
Q ss_pred eCCCcEEEEEeecCCCcccceEeecccc--CeEEEEe-----ecCCCEEEEEeCCCcEEEeE
Q 036510 232 SEDGKVIIWTVAREGDQWEGKVLHDFKT--PVYRVSW-----SLTGNILAVADGNNNVTLWE 286 (288)
Q Consensus 232 s~D~~i~iw~~~~~~~~~~~~~~~~~~~--~i~~~~~-----spdg~~l~s~~~d~~v~~w~ 286 (288)
..+..||++.+-..+ ...+.+.. ...++.+ ...+..|++-..||.|+++-
T Consensus 232 vSe~~irv~~~~~~k-----~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~S 288 (395)
T PF08596_consen 232 VSESDIRVFKPPKSK-----GAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYS 288 (395)
T ss_dssp E-SSEEEEE-TT--------EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEE
T ss_pred EcccceEEEeCCCCc-----ccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEE
Confidence 556789998764321 11122222 2234455 34677888889999999985
No 343
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=95.91 E-value=1.2 Score=39.76 Aligned_cols=97 Identities=7% Similarity=-0.037 Sum_probs=53.1
Q ss_pred ceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcc-eEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEe
Q 036510 176 QKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDW-VRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVL 254 (288)
Q Consensus 176 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~-V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~ 254 (288)
..++.++.++.+..+|..++. .+.....-... ..+.... +.+|..++.|+.+...|....+..+....
T Consensus 295 ~~vy~~~~~g~l~ald~~tG~----~~W~~~~~~~~~~~sp~v~------~g~l~v~~~~G~l~~ld~~tG~~~~~~~~- 363 (394)
T PRK11138 295 GRIYLVDQNDRVYALDTRGGV----ELWSQSDLLHRLLTAPVLY------NGYLVVGDSEGYLHWINREDGRFVAQQKV- 363 (394)
T ss_pred CEEEEEcCCCeEEEEECCCCc----EEEcccccCCCcccCCEEE------CCEEEEEeCCCEEEEEECCCCCEEEEEEc-
Confidence 456667788999999987763 11111100000 1111111 24688899999999998765322111111
Q ss_pred eccccCeEE-EEeecCCCEEEEEeCCCcEEEeEc
Q 036510 255 HDFKTPVYR-VSWSLTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 255 ~~~~~~i~~-~~~spdg~~l~s~~~d~~v~~w~~ 287 (288)
....+.+ ..+ .+..|++++.||.|..++.
T Consensus 364 --~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 364 --DSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred --CCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 1112221 111 3557888899999988764
No 344
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=95.90 E-value=1.2 Score=39.74 Aligned_cols=223 Identities=13% Similarity=0.130 Sum_probs=103.6
Q ss_pred CCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCC
Q 036510 23 GKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHK 102 (288)
Q Consensus 23 g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~ 102 (288)
+..++.++.++.+..+|...+ +.+-+..... .+.+ ++--.+..++.+..++.+..+|..+++. .......
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG--~~~W~~~~~~-~~~s---sP~v~~~~v~v~~~~g~l~ald~~tG~~---~W~~~~~- 189 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDG--EVAWQTKVAG-EALS---RPVVSDGLVLVHTSNGMLQALNESDGAV---KWTVNLD- 189 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCC--CCcccccCCC-ceec---CCEEECCEEEEECCCCEEEEEEccCCCE---eeeecCC-
Confidence 345666777888877776433 3333332221 1211 0101134566677889999999987763 2222211
Q ss_pred CceeEEE--eccCCCCeEEEEEeCCCcEEEEeecCCCC-eeeEEeeccCC-CCe---eEEEeCCCCCCCceecccccCCC
Q 036510 103 SSVNSID--WAPHELGLCLACGSSDGNISVFTARADGG-WDTSRIDQAHP-VGV---TSVSWAPSTAPGALVGSGFLDPV 175 (288)
Q Consensus 103 ~~v~~l~--~~p~~~~~~l~sg~~d~~i~i~d~~~~~~-~~~~~~~~~~~-~~v---~~i~~~p~~~~~~~~~~~~~~~~ 175 (288)
.+...+. -+|--....++.++.++.+..+|..++.. |.. ....... ..+ ..+.-+| ... +
T Consensus 190 ~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~-~~~~~~~~~~~~~~~~~~~sP-----------~v~-~ 256 (394)
T PRK11138 190 VPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQ-RISQPTGATEIDRLVDVDTTP-----------VVV-G 256 (394)
T ss_pred CCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhhee-ccccCCCccchhcccccCCCc-----------EEE-C
Confidence 1100000 01210012355567788888888766532 221 1000000 000 0000111 111 1
Q ss_pred ceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEee
Q 036510 176 QKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLH 255 (288)
Q Consensus 176 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~ 255 (288)
..++.++.++.+..+|..++. .+..... .....+... +..|..++.|+.+...|.+..+..+......
T Consensus 257 ~~vy~~~~~g~l~ald~~tG~----~~W~~~~--~~~~~~~~~------~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~ 324 (394)
T PRK11138 257 GVVYALAYNGNLVALDLRSGQ----IVWKREY--GSVNDFAVD------GGRIYLVDQNDRVYALDTRGGVELWSQSDLL 324 (394)
T ss_pred CEEEEEEcCCeEEEEECCCCC----EEEeecC--CCccCcEEE------CCEEEEEcCCCeEEEEECCCCcEEEcccccC
Confidence 345566678899999988773 1111110 001111111 2457777888888888876543222211111
Q ss_pred c--cccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510 256 D--FKTPVYRVSWSLTGNILAVADGNNNVTLWE 286 (288)
Q Consensus 256 ~--~~~~i~~~~~spdg~~l~s~~~d~~v~~w~ 286 (288)
. ...++. .+.+++.++.||.|.+.|
T Consensus 325 ~~~~~sp~v------~~g~l~v~~~~G~l~~ld 351 (394)
T PRK11138 325 HRLLTAPVL------YNGYLVVGDSEGYLHWIN 351 (394)
T ss_pred CCcccCCEE------ECCEEEEEeCCCEEEEEE
Confidence 0 112221 245566677777777766
No 345
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=95.80 E-value=1.1 Score=38.67 Aligned_cols=178 Identities=13% Similarity=0.145 Sum_probs=99.8
Q ss_pred CcEEEeecCCC----CceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeE
Q 036510 79 GTVIIWKEGNS----NEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTS 154 (288)
Q Consensus 79 ~~v~iwd~~~~----~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 154 (288)
|.+.++++... ......... ...++|+++.-.. +.++++. .+.|.+|++.....+....... .+..+.+
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~-~~~g~V~ai~~~~---~~lv~~~--g~~l~v~~l~~~~~l~~~~~~~-~~~~i~s 134 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHST-EVKGPVTAICSFN---GRLVVAV--GNKLYVYDLDNSKTLLKKAFYD-SPFYITS 134 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEE-EESS-EEEEEEET---TEEEEEE--TTEEEEEEEETTSSEEEEEEE--BSSSEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEE-eecCcceEhhhhC---CEEEEee--cCEEEEEEccCcccchhhheec-ceEEEEE
Confidence 88999998763 122222222 3567899987542 4544433 4789999998765333322221 2335666
Q ss_pred EEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCC
Q 036510 155 VSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASED 234 (288)
Q Consensus 155 i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D 234 (288)
+.... ++++.|..-+.+.++........+..+.. ....-++.++.|-++. ..++.+..+
T Consensus 135 l~~~~----------------~~I~vgD~~~sv~~~~~~~~~~~l~~va~-d~~~~~v~~~~~l~d~----~~~i~~D~~ 193 (321)
T PF03178_consen 135 LSVFK----------------NYILVGDAMKSVSLLRYDEENNKLILVAR-DYQPRWVTAAEFLVDE----DTIIVGDKD 193 (321)
T ss_dssp EEEET----------------TEEEEEESSSSEEEEEEETTTE-EEEEEE-ESS-BEEEEEEEE-SS----SEEEEEETT
T ss_pred Eeccc----------------cEEEEEEcccCEEEEEEEccCCEEEEEEe-cCCCccEEEEEEecCC----cEEEEEcCC
Confidence 65432 57888888888998876653222222221 2335568999998663 478899999
Q ss_pred CcEEEEEeecCC-Ccc----cceEee--ccccCeEEE---EeecC--CC------EEEEEeCCCcEEE
Q 036510 235 GKVIIWTVAREG-DQW----EGKVLH--DFKTPVYRV---SWSLT--GN------ILAVADGNNNVTL 284 (288)
Q Consensus 235 ~~i~iw~~~~~~-~~~----~~~~~~--~~~~~i~~~---~~spd--g~------~l~s~~~d~~v~~ 284 (288)
+++.++...... ... ...... ..+..|+++ ++.|. +. .++.++.+|.|-+
T Consensus 194 gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 194 GNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp SEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred CeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence 999999886321 111 111222 234567777 66662 22 4888889998763
No 346
>PHA02713 hypothetical protein; Provisional
Probab=95.51 E-value=0.29 Score=45.84 Aligned_cols=23 Identities=9% Similarity=0.261 Sum_probs=16.9
Q ss_pred ceeEEeecCC--cEEEEEEeCCcee
Q 036510 176 QKLCSGGCDN--TVKVWKLYNGIWK 198 (288)
Q Consensus 176 ~~l~s~~~d~--~i~iwd~~~~~~~ 198 (288)
.+.+.||.|+ ++-.||..+.+|.
T Consensus 514 ~iyv~Gg~~~~~~~e~yd~~~~~W~ 538 (557)
T PHA02713 514 TIMMLHCYESYMLQDTFNVYTYEWN 538 (557)
T ss_pred EEEEEeeecceeehhhcCccccccc
Confidence 6677888888 6667887776654
No 347
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.46 E-value=0.19 Score=45.33 Aligned_cols=153 Identities=13% Similarity=0.094 Sum_probs=83.3
Q ss_pred CeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCC
Q 036510 116 GLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNG 195 (288)
Q Consensus 116 ~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 195 (288)
+.++.++.....|+-.|+.++.....+.. +.. |.-+.+.|+..-. .+.+.+.|+ |-.|+.|.-||++-.
T Consensus 346 nlil~~~~~~~~l~klDIE~GKIVeEWk~---~~d-i~mv~~t~d~K~~------Ql~~e~Tlv-GLs~n~vfriDpRv~ 414 (644)
T KOG2395|consen 346 NLILMDGGEQDKLYKLDIERGKIVEEWKF---EDD-INMVDITPDFKFA------QLTSEQTLV-GLSDNSVFRIDPRVQ 414 (644)
T ss_pred ceEeeCCCCcCcceeeecccceeeeEeec---cCC-cceeeccCCcchh------cccccccEE-eecCCceEEeccccc
Confidence 44555665556666667766543333332 222 5555566655321 122234444 556788999998742
Q ss_pred ceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEE
Q 036510 196 IWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAV 275 (288)
Q Consensus 196 ~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s 275 (288)
.. ..+...++|. +.+.-.|+--.-....+||.||.+|.||+||-.. ...++.+-+++.+|.-+.-+.||+.|+.
T Consensus 415 ~~--~kl~~~q~kq-y~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~---~~AKTAlPgLG~~I~hVdvtadGKwil~ 488 (644)
T KOG2395|consen 415 GK--NKLAVVQSKQ-YSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIG---RRAKTALPGLGDAIKHVDVTADGKWILA 488 (644)
T ss_pred Cc--ceeeeeeccc-cccccccceeeecCCceEEEeecCCcEEeehhhh---hhhhhcccccCCceeeEEeeccCcEEEE
Confidence 11 0111112222 1222222221000135899999999999998632 2233445567889999999999999775
Q ss_pred EeCCCcEEEeE
Q 036510 276 ADGNNNVTLWE 286 (288)
Q Consensus 276 ~~~d~~v~~w~ 286 (288)
.+ +..+-|-+
T Consensus 489 Tc-~tyLlLi~ 498 (644)
T KOG2395|consen 489 TC-KTYLLLID 498 (644)
T ss_pred ec-ccEEEEEE
Confidence 54 34444433
No 348
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.28 E-value=2.7 Score=39.66 Aligned_cols=199 Identities=15% Similarity=0.202 Sum_probs=92.8
Q ss_pred cCeEEEEecCCCCCCEEEEee------CCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCc-E
Q 036510 56 GAVWEVAWAHPKFGSILASCS------FDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGN-I 128 (288)
Q Consensus 56 ~~v~~~~~~~~~~~~~l~s~s------~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~-i 128 (288)
..+.+.+.+++ |+.++..- .|..-.||-...+..... ...+ .....-.|+|++ ..+.+....+. +
T Consensus 350 ~~vsspaiSpd--G~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~--lt~g--~~~t~PsWspDG--~~lw~v~dg~~~~ 421 (591)
T PRK13616 350 GNITSAALSRS--GRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQ--VLEG--HSLTRPSWSLDA--DAVWVVVDGNTVV 421 (591)
T ss_pred cCcccceECCC--CCEEEEEEeecCCCCCcceEEEEEeCCCccee--eecC--CCCCCceECCCC--CceEEEecCcceE
Confidence 35667777764 67666554 355556664332222111 1222 236778999983 33333332212 2
Q ss_pred EEEeecCCCCeeeEEe-----eccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEE---eCCceeee
Q 036510 129 SVFTARADGGWDTSRI-----DQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKL---YNGIWKMD 200 (288)
Q Consensus 129 ~i~d~~~~~~~~~~~~-----~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~---~~~~~~~~ 200 (288)
++.+-........... .+.....|.++.|||++. .++--. ++.|.+=-+ ..+...+.
T Consensus 422 ~v~~~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~--------------RiA~i~-~g~v~Va~Vvr~~~G~~~l~ 486 (591)
T PRK13616 422 RVIRDPATGQLARTPVDASAVASRVPGPISELQLSRDGV--------------RAAMII-GGKVYLAVVEQTEDGQYALT 486 (591)
T ss_pred EEeccCCCceEEEEeccCchhhhccCCCcCeEEECCCCC--------------EEEEEE-CCEEEEEEEEeCCCCceeec
Confidence 2222111111110000 002245699999999984 222111 244444211 22221111
Q ss_pred eeeccc-cCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCC
Q 036510 201 CFPALQ-MHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGN 279 (288)
Q Consensus 201 ~~~~~~-~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d 279 (288)
....+. +-...+.++.|.++. .|+.+..+..-.+|.+...+.............++.+++=+|+ .++..+.+
T Consensus 487 ~~~~l~~~l~~~~~~l~W~~~~-----~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~ 559 (591)
T PRK13616 487 NPREVGPGLGDTAVSLDWRTGD-----SLVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDAR 559 (591)
T ss_pred ccEEeecccCCccccceEecCC-----EEEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCC
Confidence 111121 122235788999873 3556666666667777643221111011112356777777663 46666777
Q ss_pred CcEEE
Q 036510 280 NNVTL 284 (288)
Q Consensus 280 ~~v~~ 284 (288)
+.+++
T Consensus 560 g~~~l 564 (591)
T PRK13616 560 AVLQL 564 (591)
T ss_pred ceEEe
Confidence 75543
No 349
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=95.14 E-value=1.8 Score=36.87 Aligned_cols=232 Identities=14% Similarity=0.200 Sum_probs=110.6
Q ss_pred EEEEEcC-CCCEEEEeeCCCc-EEEEEeCCCCceee--------EEEeccccCeEEEEecCCCCCCEEEEe-----eCCC
Q 036510 15 HDVAMDY-YGKRLATASSDYS-IKIIGVGNNTSQHL--------AKLSGHKGAVWEVAWAHPKFGSILASC-----SFDG 79 (288)
Q Consensus 15 ~~~~~s~-~g~~l~s~~~d~~-i~lwd~~~~~~~~~--------~~~~~h~~~v~~~~~~~~~~~~~l~s~-----s~d~ 79 (288)
..++.+| .+..++-+-.-|+ ..++|...+ +.. +.+.|| -.|+++ |++|.+. ...|
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g--~~~~~~~a~~gRHFyGH------g~fs~d--G~~LytTEnd~~~g~G 77 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTG--QLLQRLWAPPGRHFYGH------GVFSPD--GRLLYTTENDYETGRG 77 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCC--ceeeEEcCCCCCEEecC------EEEcCC--CCEEEEeccccCCCcE
Confidence 3455566 3344444544444 334555332 222 234455 468765 8888764 4578
Q ss_pred cEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEE--eC----------------CCcEEEEeecCCCCeee
Q 036510 80 TVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACG--SS----------------DGNISVFTARADGGWDT 141 (288)
Q Consensus 80 ~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg--~~----------------d~~i~i~d~~~~~~~~~ 141 (288)
.|-|||...+ +.++..++.|.-.--.+.+.|++ ..|+.+ +- +-+|.+.|.+++.-...
T Consensus 78 ~IgVyd~~~~--~~ri~E~~s~GIGPHel~l~pDG--~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q 153 (305)
T PF07433_consen 78 VIGVYDAARG--YRRIGEFPSHGIGPHELLLMPDG--ETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQ 153 (305)
T ss_pred EEEEEECcCC--cEEEeEecCCCcChhhEEEcCCC--CEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeee
Confidence 9999998732 33555565544344456777774 223322 11 11122222222221111
Q ss_pred EEee-ccCCCCeeEEEeCCCCCCCceecccc----cCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEE
Q 036510 142 SRID-QAHPVGVTSVSWAPSTAPGALVGSGF----LDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVA 216 (288)
Q Consensus 142 ~~~~-~~~~~~v~~i~~~p~~~~~~~~~~~~----~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~ 216 (288)
.... .-|..++.-+++.+++.- ++++-. .+..-+++.=..++.+...+.... ....-.++|-+|+
T Consensus 154 ~~Lp~~~~~lSiRHLa~~~~G~V--~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~--------~~~~l~~Y~gSIa 223 (305)
T PF07433_consen 154 VELPPDLHQLSIRHLAVDGDGTV--AFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEE--------QWRRLNGYIGSIA 223 (305)
T ss_pred eecCccccccceeeEEecCCCcE--EEEEecCCCCCccCCeEEEEcCCCcceeccCChH--------HHHhhCCceEEEE
Confidence 1111 235556777777776521 111000 000012222222222333322111 1234567899999
Q ss_pred ecCCCCCCCcEEEEEe-CCCcEEEEEeecCCCcccceEeeccc-cCeEEEEeecCCCEEEEEeCCCcE
Q 036510 217 WAPNLGLPKSTIASAS-EDGKVIIWTVAREGDQWEGKVLHDFK-TPVYRVSWSLTGNILAVADGNNNV 282 (288)
Q Consensus 217 ~sp~~~~~~~~l~s~s-~D~~i~iw~~~~~~~~~~~~~~~~~~-~~i~~~~~spdg~~l~s~~~d~~v 282 (288)
++++. ..++..| .-+.+.+||..+. ..+.... .-+..++-.+++ |+..+..|.+
T Consensus 224 ~~~~g----~~ia~tsPrGg~~~~~d~~tg------~~~~~~~l~D~cGva~~~~~--f~~ssG~G~~ 279 (305)
T PF07433_consen 224 ADRDG----RLIAVTSPRGGRVAVWDAATG------RLLGSVPLPDACGVAPTDDG--FLVSSGQGQL 279 (305)
T ss_pred EeCCC----CEEEEECCCCCEEEEEECCCC------CEeeccccCceeeeeecCCc--eEEeCCCccE
Confidence 99974 4554444 5889999987653 2222111 234556655666 4444444543
No 350
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.07 E-value=0.097 Score=31.15 Aligned_cols=32 Identities=9% Similarity=-0.038 Sum_probs=28.6
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCcEEEEEeCC
Q 036510 11 EDTVHDVAMDYYGKRLATASSDYSIKIIGVGN 42 (288)
Q Consensus 11 ~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~ 42 (288)
...|..++|+|...+||.+..+|.|.++.++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNW 42 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECCC
Confidence 45789999999999999999999999998843
No 351
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.00 E-value=0.05 Score=43.70 Aligned_cols=104 Identities=14% Similarity=0.085 Sum_probs=59.1
Q ss_pred ceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEee
Q 036510 176 QKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLH 255 (288)
Q Consensus 176 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~ 255 (288)
..++.|+.|+.|.+|+...--.....+ ..-...|.+.. |... ...+..+++.|+.||.|++.-.+. .....
T Consensus 71 ~~~~vG~~dg~v~~~n~n~~g~~~d~~---~s~~e~i~~~I--p~~~-~~~~~c~~~~dg~ir~~n~~p~k~---~g~~g 141 (238)
T KOG2444|consen 71 AKLMVGTSDGAVYVFNWNLEGAHSDRV---CSGEESIDLGI--PNGR-DSSLGCVGAQDGRIRACNIKPNKV---LGYVG 141 (238)
T ss_pred ceEEeecccceEEEecCCccchHHHhh---hcccccceecc--cccc-ccceeEEeccCCceeeeccccCce---eeeec
Confidence 457889999999998764110000000 11112233322 3221 234788899999999999864321 12222
Q ss_pred ccc-cCeEEEEeecCCCEEEEE--eCCCcEEEeEcC
Q 036510 256 DFK-TPVYRVSWSLTGNILAVA--DGNNNVTLWEEA 288 (288)
Q Consensus 256 ~~~-~~i~~~~~spdg~~l~s~--~~d~~v~~w~~~ 288 (288)
.|. .++....-+..++.++.+ |.|..++.|+++
T Consensus 142 ~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 142 QHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred cccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence 333 455555556667777777 777778888753
No 352
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.00 E-value=1.4 Score=41.31 Aligned_cols=189 Identities=17% Similarity=0.223 Sum_probs=91.9
Q ss_pred CCCEEEEeeCC------CcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCc-----EEEeecCCCC
Q 036510 22 YGKRLATASSD------YSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGT-----VIIWKEGNSN 90 (288)
Q Consensus 22 ~g~~l~s~~~d------~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~-----v~iwd~~~~~ 90 (288)
+|...++||.| .++..||........+..+........-... +|.+.+.|+.||. +-.||..+ +
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l----~g~iYavGG~dg~~~l~svE~YDp~~-~ 406 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL----DGKLYAVGGFDGEKSLNSVECYDPVT-N 406 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEE----CCEEEEEeccccccccccEEEecCCC-C
Confidence 46788889988 3466666654444334334332222222222 3778889988865 55566643 3
Q ss_pred ceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCC------cEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCC
Q 036510 91 EWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDG------NISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPG 164 (288)
Q Consensus 91 ~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~------~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~ 164 (288)
.|.....+...+.....+.+. +++.++||.++ ++..||..++ .|.....+..-........
T Consensus 407 ~W~~va~m~~~r~~~gv~~~~----g~iYi~GG~~~~~~~l~sve~YDP~t~-~W~~~~~M~~~R~~~g~a~-------- 473 (571)
T KOG4441|consen 407 KWTPVAPMLTRRSGHGVAVLG----GKLYIIGGGDGSSNCLNSVECYDPETN-TWTLIAPMNTRRSGFGVAV-------- 473 (571)
T ss_pred cccccCCCCcceeeeEEEEEC----CEEEEEcCcCCCccccceEEEEcCCCC-ceeecCCcccccccceEEE--------
Confidence 443322222112122222221 66777787554 4566666543 2322111100000000010
Q ss_pred ceecccccCCCceeEEeecCC-----cEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCc---
Q 036510 165 ALVGSGFLDPVQKLCSGGCDN-----TVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGK--- 236 (288)
Q Consensus 165 ~~~~~~~~~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~--- 236 (288)
-++.+.+.||.|+ +|-.+|..+.+|.. +..+......+..+.+. +...|.|+.|+.
T Consensus 474 --------~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~--v~~m~~~rs~~g~~~~~------~~ly~vGG~~~~~~l 537 (571)
T KOG4441|consen 474 --------LNGKIYVVGGFDGTSALSSVERYDPETNQWTM--VAPMTSPRSAVGVVVLG------GKLYAVGGFDGNNNL 537 (571)
T ss_pred --------ECCEEEEECCccCCCccceEEEEcCCCCceeE--cccCccccccccEEEEC------CEEEEEecccCcccc
Confidence 1124566676665 36678887776642 22333333333333332 356788888874
Q ss_pred --EEEEEeec
Q 036510 237 --VIIWTVAR 244 (288)
Q Consensus 237 --i~iw~~~~ 244 (288)
|..||+..
T Consensus 538 ~~ve~ydp~~ 547 (571)
T KOG4441|consen 538 NTVECYDPET 547 (571)
T ss_pred ceeEEcCCCC
Confidence 55565543
No 353
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=94.61 E-value=2.2 Score=38.54 Aligned_cols=151 Identities=15% Similarity=0.147 Sum_probs=77.7
Q ss_pred CCCceeEEEeccCCCCeEEEEE-eCC-CcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCcee
Q 036510 101 HKSSVNSIDWAPHELGLCLACG-SSD-GNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKL 178 (288)
Q Consensus 101 h~~~v~~l~~~p~~~~~~l~sg-~~d-~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l 178 (288)
-...+..-+|+|+.......+= ... -.+.++++..+....... .+..-....|+|++. +++
T Consensus 191 ~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~----~~g~~~~P~fspDG~-------------~l~ 253 (425)
T COG0823 191 SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN----FNGNNGAPAFSPDGS-------------KLA 253 (425)
T ss_pred cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec----cCCccCCccCCCCCC-------------EEE
Confidence 3445677788888533222211 222 357888887654322211 122234567888873 445
Q ss_pred EEeecCCcEEE--EEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeC-CCcEEEEEeecCCCcccceEee
Q 036510 179 CSGGCDNTVKV--WKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASE-DGKVIIWTVAREGDQWEGKVLH 255 (288)
Q Consensus 179 ~s~~~d~~i~i--wd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~-D~~i~iw~~~~~~~~~~~~~~~ 255 (288)
.+...|+...| .|+..+.. ..+-...+.. ..=.|+|++ ++||-.|+ .|.=.||-....... ......
T Consensus 254 f~~~rdg~~~iy~~dl~~~~~--~~Lt~~~gi~---~~Ps~spdG----~~ivf~Sdr~G~p~I~~~~~~g~~-~~riT~ 323 (425)
T COG0823 254 FSSSRDGSPDIYLMDLDGKNL--PRLTNGFGIN---TSPSWSPDG----SKIVFTSDRGGRPQIYLYDLEGSQ-VTRLTF 323 (425)
T ss_pred EEECCCCCccEEEEcCCCCcc--eecccCCccc---cCccCCCCC----CEEEEEeCCCCCcceEEECCCCCc-eeEeec
Confidence 56667776554 45554421 1111111111 233788874 67777765 555455544432211 112222
Q ss_pred ccccCeEEEEeecCCCEEEEEeCC
Q 036510 256 DFKTPVYRVSWSLTGNILAVADGN 279 (288)
Q Consensus 256 ~~~~~i~~~~~spdg~~l~s~~~d 279 (288)
...... .-.|||||++|+..+..
T Consensus 324 ~~~~~~-~p~~SpdG~~i~~~~~~ 346 (425)
T COG0823 324 SGGGNS-NPVWSPDGDKIVFESSS 346 (425)
T ss_pred cCCCCc-CccCCCCCCEEEEEecc
Confidence 222222 67899999999888743
No 354
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.49 E-value=1.6 Score=41.07 Aligned_cols=107 Identities=15% Similarity=0.300 Sum_probs=68.8
Q ss_pred CCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecC------CCCceEEe
Q 036510 22 YGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEG------NSNEWIKD 95 (288)
Q Consensus 22 ~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~------~~~~~~~~ 95 (288)
-++..+.-+...++.|||.....-+.-..+ ...+.|.++.|...++++.+++.+..+.|.++... .+..|...
T Consensus 40 ~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i 118 (631)
T PF12234_consen 40 IKKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPI 118 (631)
T ss_pred cCcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCccccee
Confidence 344434444456789999865433333333 34678999999987789999999999999999542 12233333
Q ss_pred EE--eecCC-CceeEEEeccCCCCeEEEEEeCCCcEEEEee
Q 036510 96 HV--FEDHK-SSVNSIDWAPHELGLCLACGSSDGNISVFTA 133 (288)
Q Consensus 96 ~~--~~~h~-~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~ 133 (288)
+. +..|. .+|....|.++ |.+++ | .++.+.|+|-
T Consensus 119 ~~i~i~~~T~h~Igds~Wl~~--G~LvV-~-sGNqlfv~dk 155 (631)
T PF12234_consen 119 RKIDISSHTPHPIGDSIWLKD--GTLVV-G-SGNQLFVFDK 155 (631)
T ss_pred EEEEeecCCCCCccceeEecC--CeEEE-E-eCCEEEEECC
Confidence 22 23344 57899999987 44333 3 2467888864
No 355
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.26 E-value=0.18 Score=49.16 Aligned_cols=72 Identities=21% Similarity=0.287 Sum_probs=52.0
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecC-CCCCCEEEEeeCCCcEEEeec
Q 036510 11 EDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAH-PKFGSILASCSFDGTVIIWKE 86 (288)
Q Consensus 11 ~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~s~d~~v~iwd~ 86 (288)
+.+|.+++|+.+|+.++.|=.+|.|.+||...+ +.++-+..|..+.+++-+.- ...+..+.++...|. +|..
T Consensus 130 ~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~--k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 130 QGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA--KILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred CCcceeeEecCCCceeccccCCCcEEEEEccCC--cceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 579999999999999999999999999998643 45666666665655544331 123557777777776 5654
No 356
>PRK02888 nitrous-oxide reductase; Validated
Probab=94.22 E-value=3.5 Score=38.72 Aligned_cols=62 Identities=11% Similarity=0.121 Sum_probs=42.5
Q ss_pred CCEEEEeeCCCcEEEeecCC----CCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCC
Q 036510 69 GSILASCSFDGTVIIWKEGN----SNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARAD 136 (288)
Q Consensus 69 ~~~l~s~s~d~~v~iwd~~~----~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~ 136 (288)
|++... .++.|.+.|.++ +.. ....++ -......+.++||+ ..+++++..++++.++|+.+.
T Consensus 288 GK~~~V--~gn~V~VID~~t~~~~~~~--v~~yIP-VGKsPHGV~vSPDG-kylyVanklS~tVSVIDv~k~ 353 (635)
T PRK02888 288 GKFKTI--GGSKVPVVDGRKAANAGSA--LTRYVP-VPKNPHGVNTSPDG-KYFIANGKLSPTVTVIDVRKL 353 (635)
T ss_pred CCEEEE--CCCEEEEEECCccccCCcc--eEEEEE-CCCCccceEECCCC-CEEEEeCCCCCcEEEEEChhh
Confidence 554443 367899999876 221 233343 23467889999995 456777788999999999763
No 357
>PRK13616 lipoprotein LpqB; Provisional
Probab=94.18 E-value=3.3 Score=39.09 Aligned_cols=162 Identities=12% Similarity=0.115 Sum_probs=79.1
Q ss_pred CceeEEEeccCCCCeEEEEEe------CCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCc
Q 036510 103 SSVNSIDWAPHELGLCLACGS------SDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQ 176 (288)
Q Consensus 103 ~~v~~l~~~p~~~~~~l~sg~------~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~ 176 (288)
..+...+++|++ ..++... .|..-.||-...++.... ...+ ....+-.|+|++... ++..+- +..-
T Consensus 350 ~~vsspaiSpdG--~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~--lt~g--~~~t~PsWspDG~~l-w~v~dg-~~~~ 421 (591)
T PRK13616 350 GNITSAALSRSG--RQVAAVVTLGRGAPDPASSLWVGPLGGVAVQ--VLEG--HSLTRPSWSLDADAV-WVVVDG-NTVV 421 (591)
T ss_pred cCcccceECCCC--CEEEEEEeecCCCCCcceEEEEEeCCCccee--eecC--CCCCCceECCCCCce-EEEecC-cceE
Confidence 356788889984 3333332 244334454333322211 1222 237788999996311 110000 0001
Q ss_pred eeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceE---
Q 036510 177 KLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKV--- 253 (288)
Q Consensus 177 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~--- 253 (288)
++......+.+.+.++..+. .. . .....|.++.||||+ ..+|... ++.|.+=-+...... +..+
T Consensus 422 ~v~~~~~~gql~~~~vd~ge----~~-~--~~~g~Issl~wSpDG----~RiA~i~-~g~v~Va~Vvr~~~G-~~~l~~~ 488 (591)
T PRK13616 422 RVIRDPATGQLARTPVDASA----VA-S--RVPGPISELQLSRDG----VRAAMII-GGKVYLAVVEQTEDG-QYALTNP 488 (591)
T ss_pred EEeccCCCceEEEEeccCch----hh-h--ccCCCcCeEEECCCC----CEEEEEE-CCEEEEEEEEeCCCC-ceeeccc
Confidence 11112223344444554431 10 0 234469999999985 5566555 466766443332111 1111
Q ss_pred ---eeccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510 254 ---LHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE 286 (288)
Q Consensus 254 ---~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~ 286 (288)
.......+.++.|.++++++ ++..++...+|.
T Consensus 489 ~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~ 523 (591)
T PRK13616 489 REVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWY 523 (591)
T ss_pred EEeecccCCccccceEecCCEEE-EEecCCCCceEE
Confidence 12233456889999999965 555555556665
No 358
>PHA02790 Kelch-like protein; Provisional
Probab=93.76 E-value=5.5 Score=36.64 Aligned_cols=109 Identities=8% Similarity=0.089 Sum_probs=51.7
Q ss_pred CCCEEEEeeCCC-----cEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCC--CcEEEeecCCCCceEE
Q 036510 22 YGKRLATASSDY-----SIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFD--GTVIIWKEGNSNEWIK 94 (288)
Q Consensus 22 ~g~~l~s~~~d~-----~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d--~~v~iwd~~~~~~~~~ 94 (288)
++..++.||.++ ++..||........+..+.........+.. ++.+.+.|+.+ .++..||... +.|..
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~----~~~iYviGG~~~~~sve~ydp~~-n~W~~ 345 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPA----NNKLYVVGGLPNPTSVERWFHGD-AAWVN 345 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEE----CCEEEEECCcCCCCceEEEECCC-CeEEE
Confidence 355667777543 455666543322222222211111122222 26777777754 4577787654 44544
Q ss_pred eEEeecCCCceeEEEeccCCCCeEEEEEeCCC---cEEEEeecCCCCee
Q 036510 95 DHVFEDHKSSVNSIDWAPHELGLCLACGSSDG---NISVFTARADGGWD 140 (288)
Q Consensus 95 ~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~---~i~i~d~~~~~~~~ 140 (288)
...++..+.....+.. + +.+.+.||.++ .+..||.+++ .|.
T Consensus 346 ~~~l~~~r~~~~~~~~--~--g~IYviGG~~~~~~~ve~ydp~~~-~W~ 389 (480)
T PHA02790 346 MPSLLKPRCNPAVASI--N--NVIYVIGGHSETDTTTEYLLPNHD-QWQ 389 (480)
T ss_pred CCCCCCCCcccEEEEE--C--CEEEEecCcCCCCccEEEEeCCCC-EEE
Confidence 3333222211122222 2 56667776543 4667877643 353
No 359
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=93.68 E-value=3.5 Score=34.21 Aligned_cols=210 Identities=12% Similarity=0.187 Sum_probs=104.0
Q ss_pred EEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEE
Q 036510 50 KLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNIS 129 (288)
Q Consensus 50 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~ 129 (288)
.+.+-...+.+|+|.++ .+.+++.....+.|.-.+. ++. ......+.+ -+..-.|.+..+ +.++++-..++.+.
T Consensus 16 ~l~g~~~e~SGLTy~pd-~~tLfaV~d~~~~i~els~-~G~-vlr~i~l~g-~~D~EgI~y~g~--~~~vl~~Er~~~L~ 89 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPD-TGTLFAVQDEPGEIYELSL-DGK-VLRRIPLDG-FGDYEGITYLGN--GRYVLSEERDQRLY 89 (248)
T ss_dssp E-TT--S-EEEEEEETT-TTEEEEEETTTTEEEEEET-T---EEEEEE-SS--SSEEEEEE-ST--TEEEEEETTTTEEE
T ss_pred ECCCccCCccccEEcCC-CCeEEEEECCCCEEEEEcC-CCC-EEEEEeCCC-CCCceeEEEECC--CEEEEEEcCCCcEE
Confidence 34455566899999865 3556666677777766664 333 322223333 245677877654 56666666789999
Q ss_pred EEeecCCCC-eeeE-----E--eeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeC--Cceee
Q 036510 130 VFTARADGG-WDTS-----R--IDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYN--GIWKM 199 (288)
Q Consensus 130 i~d~~~~~~-~~~~-----~--~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--~~~~~ 199 (288)
++++..... .... . ....++..+.-++|+|.. +.|..+-+....+|+.+.. .....
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~--------------~~L~v~kE~~P~~l~~~~~~~~~~~~ 155 (248)
T PF06977_consen 90 IFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKT--------------NRLFVAKERKPKRLYEVNGFPGGFDL 155 (248)
T ss_dssp EEEE----TT--EEEEEEEE---S---SS--EEEEEETTT--------------TEEEEEEESSSEEEEEEESTT-SS--
T ss_pred EEEEeccccccchhhceEEecccccCCCcceEEEEEcCCC--------------CEEEEEeCCCChhhEEEccccCccce
Confidence 998844221 1111 1 111345668889998876 4455556666677777754 11111
Q ss_pred eeee--c---cccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEe-eccc------cCeEEEEee
Q 036510 200 DCFP--A---LQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVL-HDFK------TPVYRVSWS 267 (288)
Q Consensus 200 ~~~~--~---~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~-~~~~------~~i~~~~~s 267 (288)
.... . ......-+.++.++|.. +.+++-....+.|...|.+- .......+ .+.. ...-.++|.
T Consensus 156 ~~~~~~~~~~~~~~~~d~S~l~~~p~t---~~lliLS~es~~l~~~d~~G--~~~~~~~L~~g~~gl~~~~~QpEGIa~d 230 (248)
T PF06977_consen 156 FVSDDQDLDDDKLFVRDLSGLSYDPRT---GHLLILSDESRLLLELDRQG--RVVSSLSLDRGFHGLSKDIPQPEGIAFD 230 (248)
T ss_dssp EEEE-HHHH-HT--SS---EEEEETTT---TEEEEEETTTTEEEEE-TT----EEEEEE-STTGGG-SS---SEEEEEE-
T ss_pred eeccccccccccceeccccceEEcCCC---CeEEEEECCCCeEEEECCCC--CEEEEEEeCCcccCcccccCCccEEEEC
Confidence 1000 1 11223347889999974 56777777788888887432 11111111 1111 135679999
Q ss_pred cCCCEEEEEeCCCcEEEe
Q 036510 268 LTGNILAVADGNNNVTLW 285 (288)
Q Consensus 268 pdg~~l~s~~~d~~v~~w 285 (288)
|+|++.+++ +.+...++
T Consensus 231 ~~G~LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 231 PDGNLYIVS-EPNLFYRF 247 (248)
T ss_dssp TT--EEEEE-TTTEEEEE
T ss_pred CCCCEEEEc-CCceEEEe
Confidence 999877665 55655444
No 360
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=93.60 E-value=4.1 Score=36.77 Aligned_cols=113 Identities=20% Similarity=0.238 Sum_probs=63.0
Q ss_pred ceEEEEEcCCCCEEEEee---CC-CcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEE-EEeeCCCcEEEeec-
Q 036510 13 TVHDVAMDYYGKRLATAS---SD-YSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSIL-ASCSFDGTVIIWKE- 86 (288)
Q Consensus 13 ~v~~~~~s~~g~~l~s~~---~d-~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~s~d~~v~iwd~- 86 (288)
.+..-+|+|+++.++-.. .. ..+.+++++.+..+.+.++.++.. ..+|+++ |+.| .+...|+...||-+
T Consensus 194 ~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~---~P~fspD--G~~l~f~~~rdg~~~iy~~d 268 (425)
T COG0823 194 LILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNG---APAFSPD--GSKLAFSSSRDGSPDIYLMD 268 (425)
T ss_pred ceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccC---CccCCCC--CCEEEEEECCCCCccEEEEc
Confidence 334446888886654332 22 357778887665566666666654 4678876 5544 56667888877744
Q ss_pred -CCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecC
Q 036510 87 -GNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARA 135 (288)
Q Consensus 87 -~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~ 135 (288)
..... ..+..-.+.-..=.|+|++. .++.+.+..|.-.||-...
T Consensus 269 l~~~~~----~~Lt~~~gi~~~Ps~spdG~-~ivf~Sdr~G~p~I~~~~~ 313 (425)
T COG0823 269 LDGKNL----PRLTNGFGINTSPSWSPDGS-KIVFTSDRGGRPQIYLYDL 313 (425)
T ss_pred CCCCcc----eecccCCccccCccCCCCCC-EEEEEeCCCCCcceEEECC
Confidence 33221 11222222222457889853 3344456666666665443
No 361
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.53 E-value=0.52 Score=42.66 Aligned_cols=102 Identities=14% Similarity=0.237 Sum_probs=63.3
Q ss_pred eEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCC----CCcEEEEEeCCCcEEEEEeecCCC-cccce
Q 036510 178 LCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGL----PKSTIASASEDGKVIIWTVAREGD-QWEGK 252 (288)
Q Consensus 178 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~----~~~~l~s~s~D~~i~iw~~~~~~~-~~~~~ 252 (288)
|.++..-..++-.|++.| +.+.+..-|++ |+-+.+.|+.+. +.++| .|-+|+.|.-||++.... .....
T Consensus 349 l~~~~~~~~l~klDIE~G----KIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~Tl-vGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERG----KIVEEWKFEDD-INMVDITPDFKFAQLTSEQTL-VGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred eeCCCCcCcceeeecccc----eeeeEeeccCC-cceeeccCCcchhcccccccE-EeecCCceEEecccccCcceeeee
Confidence 335566666888888887 56667777777 788888887632 12333 467788899999885321 11111
Q ss_pred Eeecccc--CeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510 253 VLHDFKT--PVYRVSWSLTGNILAVADGNNNVTLWE 286 (288)
Q Consensus 253 ~~~~~~~--~i~~~~~spdg~~l~s~~~d~~v~~w~ 286 (288)
..+++.. .-.|.+=..+ -+|++||.+|.|||||
T Consensus 423 q~kqy~~k~nFsc~aTT~s-G~IvvgS~~GdIRLYd 457 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTES-GYIVVGSLKGDIRLYD 457 (644)
T ss_pred eccccccccccceeeecCC-ceEEEeecCCcEEeeh
Confidence 1233322 1222232223 4678899999999998
No 362
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.34 E-value=0.084 Score=50.44 Aligned_cols=126 Identities=16% Similarity=0.212 Sum_probs=68.0
Q ss_pred ecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecC-CCCee---eEEeeccCCCCeeEEEeCCCCCCCceecccccCC
Q 036510 99 EDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARA-DGGWD---TSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDP 174 (288)
Q Consensus 99 ~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~-~~~~~---~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~ 174 (288)
++..+.|.-+.|---...+. + ..-|.+.+|++.. .+.++ .++........+..+.|+|--. +
T Consensus 129 kgf~G~v~dl~fah~~~pk~-~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~-----------~ 194 (1283)
T KOG1916|consen 129 KGFPGGVGDLQFAHTKCPKG-R--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAV-----------N 194 (1283)
T ss_pred hcCCCCcccccccccCChHH-H--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeeccccc-----------c
Confidence 45556666666632111111 1 3336788998764 12222 1222222333456778877532 2
Q ss_pred CceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCC-------CCCcEEEEEeCCCcEEEEEee
Q 036510 175 VQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLG-------LPKSTIASASEDGKVIIWTVA 243 (288)
Q Consensus 175 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~-------~~~~~l~s~s~D~~i~iw~~~ 243 (288)
..+++-+-.++.|++..+.... ..-+.+|..++..++|...+. .+++.||.++.||.++.|-+.
T Consensus 195 ~~~ic~~~~~~~i~lL~~~ra~-----~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 195 KVYICYGLKGGEIRLLNINRAL-----RSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred cceeeeccCCCceeEeeechHH-----HHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence 2567778888889887765532 123455777777765544321 124566666666666666554
No 363
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=93.33 E-value=5.9 Score=35.64 Aligned_cols=48 Identities=23% Similarity=0.358 Sum_probs=34.7
Q ss_pred cEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecC
Q 036510 34 SIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEG 87 (288)
Q Consensus 34 ~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~ 87 (288)
.|++|+..+ ..+.++.=-.+.+..+.|+. .+.|+....||+++++|+.
T Consensus 62 ~I~iys~sG---~ll~~i~w~~~~iv~~~wt~---~e~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 62 SIQIYSSSG---KLLSSIPWDSGRIVGMGWTD---DEELVVVQSDGTVRVYDLF 109 (410)
T ss_pred EEEEECCCC---CEeEEEEECCCCEEEEEECC---CCeEEEEEcCCEEEEEeCC
Confidence 488887643 34444432237899999974 4678888999999999985
No 364
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.32 E-value=4.4 Score=34.15 Aligned_cols=55 Identities=20% Similarity=0.190 Sum_probs=40.5
Q ss_pred EEcCCCCEEEEeeCC-----CcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEe
Q 036510 18 AMDYYGKRLATASSD-----YSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASC 75 (288)
Q Consensus 18 ~~s~~g~~l~s~~~d-----~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~ 75 (288)
.|||||++|.+.=+| |.|-|||.. ...+.+..+..|.-.-..+.+..| |++++.+
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r-~~fqrvgE~~t~GiGpHev~lm~D--Grtlvva 179 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAR-EGFQRVGEFSTHGIGPHEVTLMAD--GRTLVVA 179 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecc-cccceecccccCCcCcceeEEecC--CcEEEEe
Confidence 489999999887665 668899986 345667777777766677888754 7777754
No 365
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=93.32 E-value=0.3 Score=28.28 Aligned_cols=29 Identities=21% Similarity=0.241 Sum_probs=23.8
Q ss_pred CeEEEEeecCC---CEEEEEeCCCcEEEeEcC
Q 036510 260 PVYRVSWSLTG---NILAVADGNNNVTLWEEA 288 (288)
Q Consensus 260 ~i~~~~~spdg---~~l~s~~~d~~v~~w~~~ 288 (288)
.+.+++|||+. .+|+.+-.-+.|+|+|++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R 33 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTR 33 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEcc
Confidence 47889999865 488888888999999963
No 366
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=93.27 E-value=5.7 Score=35.31 Aligned_cols=155 Identities=17% Similarity=0.177 Sum_probs=87.4
Q ss_pred eeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEee--
Q 036510 105 VNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGG-- 182 (288)
Q Consensus 105 v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~-- 182 (288)
-..+++++.. .+..+....++.|.+.|............ + ..-..+.++|++. .+.++-.
T Consensus 76 p~~i~v~~~~-~~vyv~~~~~~~v~vid~~~~~~~~~~~v--G--~~P~~~~~~~~~~-------------~vYV~n~~~ 137 (381)
T COG3391 76 PAGVAVNPAG-NKVYVTTGDSNTVSVIDTATNTVLGSIPV--G--LGPVGLAVDPDGK-------------YVYVANAGN 137 (381)
T ss_pred ccceeeCCCC-CeEEEecCCCCeEEEEcCcccceeeEeee--c--cCCceEEECCCCC-------------EEEEEeccc
Confidence 3567777764 44566666678899998654432221111 1 1345677777762 2333333
Q ss_pred cCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceE--eeccccC
Q 036510 183 CDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKV--LHDFKTP 260 (288)
Q Consensus 183 ~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~--~~~~~~~ 260 (288)
.++++.+.|..++. .......-..+ ..+.+.|++ ....++-..++.|.+.|.+..... .... .-.....
T Consensus 138 ~~~~vsvid~~t~~----~~~~~~vG~~P-~~~a~~p~g---~~vyv~~~~~~~v~vi~~~~~~v~-~~~~~~~~~~~~~ 208 (381)
T COG3391 138 GNNTVSVIDAATNK----VTATIPVGNTP-TGVAVDPDG---NKVYVTNSDDNTVSVIDTSGNSVV-RGSVGSLVGVGTG 208 (381)
T ss_pred CCceEEEEeCCCCe----EEEEEecCCCc-ceEEECCCC---CeEEEEecCCCeEEEEeCCCccee-ccccccccccCCC
Confidence 36778777776552 22222111233 788999985 234555567999999996643211 0000 0111223
Q ss_pred eEEEEeecCCCEEEEEeCC---CcEEEeE
Q 036510 261 VYRVSWSLTGNILAVADGN---NNVTLWE 286 (288)
Q Consensus 261 i~~~~~spdg~~l~s~~~d---~~v~~w~ 286 (288)
...+.++|||+++.+.... +++...|
T Consensus 209 P~~i~v~~~g~~~yV~~~~~~~~~v~~id 237 (381)
T COG3391 209 PAGIAVDPDGNRVYVANDGSGSNNVLKID 237 (381)
T ss_pred CceEEECCCCCEEEEEeccCCCceEEEEe
Confidence 4678999999987777554 3666555
No 367
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.12 E-value=6.6 Score=35.66 Aligned_cols=176 Identities=14% Similarity=0.185 Sum_probs=82.5
Q ss_pred cccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEE-e
Q 036510 54 HKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVF-T 132 (288)
Q Consensus 54 h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~-d 132 (288)
..-....+.++|. |+.++. ..||.-.|+.... +.. .. .+......|.+. +. +|+-...++|.++ +
T Consensus 31 ~~~~p~~ls~npn--gr~v~V-~g~geY~iyt~~~---~r~-k~----~G~g~~~vw~~~--n~-yAv~~~~~~I~I~kn 96 (443)
T PF04053_consen 31 CEIYPQSLSHNPN--GRFVLV-CGDGEYEIYTALA---WRN-KA----FGSGLSFVWSSR--NR-YAVLESSSTIKIYKN 96 (443)
T ss_dssp -SS--SEEEE-TT--SSEEEE-EETTEEEEEETTT---TEE-EE----EEE-SEEEE-TS--SE-EEEE-TTS-EEEEET
T ss_pred CCcCCeeEEECCC--CCEEEE-EcCCEEEEEEccC---Ccc-cc----cCceeEEEEecC--cc-EEEEECCCeEEEEEc
Confidence 3444567888753 555555 6678888876322 111 11 235677888874 44 5555557888886 2
Q ss_pred ecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcce
Q 036510 133 ARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWV 212 (288)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V 212 (288)
+.... ..... .+..+..|-- +.+|...+ ++.|.+||..++ +.+..+.. ..|
T Consensus 97 ~~~~~-~k~i~----~~~~~~~If~-----------------G~LL~~~~-~~~i~~yDw~~~----~~i~~i~v--~~v 147 (443)
T PF04053_consen 97 FKNEV-VKSIK----LPFSVEKIFG-----------------GNLLGVKS-SDFICFYDWETG----KLIRRIDV--SAV 147 (443)
T ss_dssp TEE-T-T---------SS-EEEEE------------------SSSEEEEE-TTEEEEE-TTT------EEEEESS---E-
T ss_pred Ccccc-ceEEc----CCcccceEEc-----------------CcEEEEEC-CCCEEEEEhhHc----ceeeEEec--CCC
Confidence 22111 00000 0112233311 24555554 448999999876 33444332 238
Q ss_pred EEEEecCCCCCCCcEEEEEeCCCcEEEEEeecC------C--CcccceEeeccccCeEEEEeecCCCEEEEEeCC
Q 036510 213 RDVAWAPNLGLPKSTIASASEDGKVIIWTVARE------G--DQWEGKVLHDFKTPVYRVSWSLTGNILAVADGN 279 (288)
Q Consensus 213 ~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~------~--~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d 279 (288)
..|.|++++ .++|-.+.| ++.|.+.+.. . .......+++....|.+..|..| .|+.....
T Consensus 148 k~V~Ws~~g----~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~ 215 (443)
T PF04053_consen 148 KYVIWSDDG----ELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN 215 (443)
T ss_dssp EEEEE-TTS----SEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT
T ss_pred cEEEEECCC----CEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC
Confidence 999999984 567766655 6777765432 0 00022445555567778888655 55544443
No 368
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.02 E-value=0.18 Score=48.37 Aligned_cols=182 Identities=15% Similarity=0.213 Sum_probs=100.3
Q ss_pred EeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCC--CC--ceEEeEEeecCCCceeEEEeccCCC-CeEEEEEeCC
Q 036510 51 LSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGN--SN--EWIKDHVFEDHKSSVNSIDWAPHEL-GLCLACGSSD 125 (288)
Q Consensus 51 ~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~--~~--~~~~~~~~~~h~~~v~~l~~~p~~~-~~~l~sg~~d 125 (288)
+.|..+.|-.+.|.+... ..+. -.-|..-+|++.. ++ +-..++........+.-+.|+|--. ..++..+-.+
T Consensus 128 ~kgf~G~v~dl~fah~~~-pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~ 204 (1283)
T KOG1916|consen 128 AKGFPGGVGDLQFAHTKC-PKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKG 204 (1283)
T ss_pred HhcCCCCcccccccccCC-hHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCC
Confidence 345667788888876422 2222 2336777888643 21 1112233323334456677776432 3456666777
Q ss_pred CcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEe-CCceeeeeeec
Q 036510 126 GNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLY-NGIWKMDCFPA 204 (288)
Q Consensus 126 ~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~ 204 (288)
+.+++....+... ....+|...++.++|...+ .+....+..++..|+....||.++.|-+. ++.....|.+.
T Consensus 205 ~~i~lL~~~ra~~----~l~rsHs~~~~d~a~~~~g---~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhe 277 (1283)
T KOG1916|consen 205 GEIRLLNINRALR----SLFRSHSQRVTDMAFFAEG---VLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHE 277 (1283)
T ss_pred CceeEeeechHHH----HHHHhcCCCcccHHHHhhc---hhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhc
Confidence 8888866543211 2223476666666554432 22333455667899999999999999874 34434456666
Q ss_pred cccCCc-c-eEEEEecCCCCC-----CCcEEEEEeC-CCcEEEEEee
Q 036510 205 LQMHTD-W-VRDVAWAPNLGL-----PKSTIASASE-DGKVIIWTVA 243 (288)
Q Consensus 205 ~~~h~~-~-V~~v~~sp~~~~-----~~~~l~s~s~-D~~i~iw~~~ 243 (288)
.+-|+. + |... ++.+... -...++++++ ...+++|...
T Consensus 278 wkphd~~p~vC~l-c~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a 323 (1283)
T KOG1916|consen 278 WKPHDKHPRVCWL-CHKQEILVVSIGKWVLRITTTDVNREEKFWAEA 323 (1283)
T ss_pred cCCCCCCCceeee-eccccccCCccceeEEEEecccCCcceeEeecc
Confidence 666662 2 3222 3332211 1234556655 5578888653
No 369
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=92.95 E-value=4.8 Score=33.55 Aligned_cols=143 Identities=16% Similarity=0.185 Sum_probs=75.1
Q ss_pred ceEEEEEcCCCCEEEEee-CCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEee-cCCCC
Q 036510 13 TVHDVAMDYYGKRLATAS-SDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK-EGNSN 90 (288)
Q Consensus 13 ~v~~~~~s~~g~~l~s~~-~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd-~~~~~ 90 (288)
.+.+.+++++|+.++... .++.-.||-..... .....+.+. .+..-.|+++ +.+.+....+...+++. ...+.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~-~~~~~~~g~--~l~~PS~d~~--g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGG-PVRPVLTGG--SLTRPSWDPD--GWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCC-cceeeccCC--ccccccccCC--CCEEEEEcCCCceEEEEecCCCc
Confidence 567889999998776655 23333444332221 111112333 5667788754 66666666666767763 22222
Q ss_pred ceEEeEEeecCCCceeEEEeccCCCCeEEEEE--eCCCcEEEEeecCCCCe---e---eEEeeccCCCCeeEEEeCCCC
Q 036510 91 EWIKDHVFEDHKSSVNSIDWAPHELGLCLACG--SSDGNISVFTARADGGW---D---TSRIDQAHPVGVTSVSWAPST 161 (288)
Q Consensus 91 ~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg--~~d~~i~i~d~~~~~~~---~---~~~~~~~~~~~v~~i~~~p~~ 161 (288)
..........-...|..++++||+. ++++.. ..++.|.+--+..+..- . ...........+..+.|.++.
T Consensus 100 ~~~~~v~~~~~~~~I~~l~vSpDG~-RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~ 177 (253)
T PF10647_consen 100 GEPVEVDWPGLRGRITALRVSPDGT-RVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDS 177 (253)
T ss_pred ceeEEecccccCCceEEEEECCCCc-EEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCC
Confidence 1111111111122899999999953 322222 34567777655432211 1 111122234568899999886
No 370
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.91 E-value=0.49 Score=46.28 Aligned_cols=101 Identities=19% Similarity=0.257 Sum_probs=64.3
Q ss_pred CCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCC
Q 036510 23 GKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHK 102 (288)
Q Consensus 23 g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~ 102 (288)
+..++.|+.-|.+-+.|+.+.- .++.+-..-.++|.+++|+. +|..++.|-.+|.|.+||+..++ ..+.+..|.
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL-~~~~~ne~v~~~Vtsvafn~--dg~~l~~G~~~G~V~v~D~~~~k---~l~~i~e~~ 172 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNL-GPLHQNERVQGPVTSVAFNQ--DGSLLLAGLGDGHVTVWDMHRAK---ILKVITEHG 172 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhccc-chhhcCCccCCcceeeEecC--CCceeccccCCCcEEEEEccCCc---ceeeeeecC
Confidence 4456666666777777764321 11222223358899999975 48999999999999999998765 334555566
Q ss_pred CceeEEEec---cCCCCeEEEEEeCCCcEEEEee
Q 036510 103 SSVNSIDWA---PHELGLCLACGSSDGNISVFTA 133 (288)
Q Consensus 103 ~~v~~l~~~---p~~~~~~l~sg~~d~~i~i~d~ 133 (288)
.+..++-++ .+ +..+.++...|. +|..
T Consensus 173 ap~t~vi~v~~t~~--nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 173 APVTGVIFVGRTSQ--NSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred CccceEEEEEEeCC--CcEEEEccCCCc--eEEE
Confidence 666655432 22 225666766665 5554
No 371
>PHA03098 kelch-like protein; Provisional
Probab=92.88 E-value=8 Score=35.99 Aligned_cols=62 Identities=16% Similarity=0.279 Sum_probs=30.8
Q ss_pred CCEEEEeeCC-----CcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCC------CcEEEEeecC
Q 036510 69 GSILASCSFD-----GTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSD------GNISVFTARA 135 (288)
Q Consensus 69 ~~~l~s~s~d-----~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d------~~i~i~d~~~ 135 (288)
+.+++.|+.+ ..+..||..+ +.|.....++..+.. .++... + +.+.+.||.+ +.+..||+.+
T Consensus 343 ~~lyv~GG~~~~~~~~~v~~yd~~~-~~W~~~~~lp~~r~~-~~~~~~-~--~~iYv~GG~~~~~~~~~~v~~yd~~t 415 (534)
T PHA03098 343 NRIYVIGGIYNSISLNTVESWKPGE-SKWREEPPLIFPRYN-PCVVNV-N--NLIYVIGGISKNDELLKTVECFSLNT 415 (534)
T ss_pred CEEEEEeCCCCCEecceEEEEcCCC-CceeeCCCcCcCCcc-ceEEEE-C--CEEEEECCcCCCCcccceEEEEeCCC
Confidence 6677777765 3466777754 345433222211111 122211 2 4556666532 3567777764
No 372
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=92.87 E-value=0.42 Score=27.69 Aligned_cols=33 Identities=18% Similarity=0.341 Sum_probs=26.4
Q ss_pred CceeEEEeccCCC-CeEEEEEeCCCcEEEEeecC
Q 036510 103 SSVNSIDWAPHEL-GLCLACGSSDGNISVFTARA 135 (288)
Q Consensus 103 ~~v~~l~~~p~~~-~~~l~sg~~d~~i~i~d~~~ 135 (288)
+.|.++.|+|.+. ..+|+....-+.+.++|+|+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 3688999998652 26788888889999999985
No 373
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=92.84 E-value=2.6 Score=40.23 Aligned_cols=111 Identities=16% Similarity=0.104 Sum_probs=67.0
Q ss_pred cCCCceeEEeecCCcEEEEEEeCCc-------------ee---eeeeeccccCCcceEEEEec--CCCCCCCcEEEEEeC
Q 036510 172 LDPVQKLCSGGCDNTVKVWKLYNGI-------------WK---MDCFPALQMHTDWVRDVAWA--PNLGLPKSTIASASE 233 (288)
Q Consensus 172 ~~~~~~l~s~~~d~~i~iwd~~~~~-------------~~---~~~~~~~~~h~~~V~~v~~s--p~~~~~~~~l~s~s~ 233 (288)
+-....|+.+..||.|.+|.+..-. .. .++...+. ....++.++++ .. .++||.++.
T Consensus 111 lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~----~rlIAVSsN 185 (717)
T PF08728_consen 111 LGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKK----SRLIAVSSN 185 (717)
T ss_pred cCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCc----ceEEEEecC
Confidence 3345678999999999999763100 00 00111112 22357888888 43 256777777
Q ss_pred CCcEEEEEeecCCCcccceEeeccccCeEEEEeecCC---C---EEEEEeCCCcEEEeEc
Q 036510 234 DGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTG---N---ILAVADGNNNVTLWEE 287 (288)
Q Consensus 234 D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg---~---~l~s~~~d~~v~~w~~ 287 (288)
-..|.||-............-+.+...|.+|+|-++. . .+++++-.|.+.+|++
T Consensus 186 s~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 186 SQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred CceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 7788888765421111111112344568888888754 2 7888899999998875
No 374
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=92.75 E-value=6 Score=37.44 Aligned_cols=104 Identities=14% Similarity=0.306 Sum_probs=58.9
Q ss_pred CeEEEEEeCCCcEEEEeecCCCCeeeEEeec--cCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEE-
Q 036510 116 GLCLACGSSDGNISVFTARADGGWDTSRIDQ--AHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKL- 192 (288)
Q Consensus 116 ~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~--~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~- 192 (288)
++..+.-+....+.|||.+... ....+ .....|..++|..... ++.+.+.|..+.|.++--
T Consensus 41 ~k~a~V~~~~~~LtIWD~~~~~----lE~~~~f~~~~~I~dLDWtst~d------------~qsiLaVGf~~~v~l~~Q~ 104 (631)
T PF12234_consen 41 KKIAVVDSSRSELTIWDTRSGV----LEYEESFSEDDPIRDLDWTSTPD------------GQSILAVGFPHHVLLYTQL 104 (631)
T ss_pred CcEEEEECCCCEEEEEEcCCcE----EEEeeeecCCCceeeceeeecCC------------CCEEEEEEcCcEEEEEEcc
Confidence 3433334444589999998653 11112 2356799999965431 256667777888887643
Q ss_pred ----eC--Cce-eeeeeeccccCC-cceEEEEecCCCCCCCcEEEEEeCCCcEEEEEe
Q 036510 193 ----YN--GIW-KMDCFPALQMHT-DWVRDVAWAPNLGLPKSTIASASEDGKVIIWTV 242 (288)
Q Consensus 193 ----~~--~~~-~~~~~~~~~~h~-~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~ 242 (288)
.. ..+ .++.+ .+..|. ++|.+..|-+++ .|+.|+ ++.+.|++-
T Consensus 105 R~dy~~~~p~w~~i~~i-~i~~~T~h~Igds~Wl~~G-----~LvV~s-GNqlfv~dk 155 (631)
T PF12234_consen 105 RYDYTNKGPSWAPIRKI-DISSHTPHPIGDSIWLKDG-----TLVVGS-GNQLFVFDK 155 (631)
T ss_pred chhhhcCCcccceeEEE-EeecCCCCCccceeEecCC-----eEEEEe-CCEEEEECC
Confidence 11 111 11111 123344 469999999974 444444 346777764
No 375
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=92.74 E-value=5.1 Score=33.36 Aligned_cols=154 Identities=19% Similarity=0.214 Sum_probs=80.6
Q ss_pred ceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeec
Q 036510 104 SVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGC 183 (288)
Q Consensus 104 ~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~ 183 (288)
.+.+.++++++. .+++....++.-.+|-.+.++..... ..+ ..+...+|++++ .+......
T Consensus 25 ~~~s~AvS~dg~-~~A~v~~~~~~~~L~~~~~~~~~~~~--~~g--~~l~~PS~d~~g--------------~~W~v~~~ 85 (253)
T PF10647_consen 25 DVTSPAVSPDGS-RVAAVSEGDGGRSLYVGPAGGPVRPV--LTG--GSLTRPSWDPDG--------------WVWTVDDG 85 (253)
T ss_pred cccceEECCCCC-eEEEEEEcCCCCEEEEEcCCCcceee--ccC--CccccccccCCC--------------CEEEEEcC
Confidence 578889999852 33333323444445544444332221 122 257778888875 33333333
Q ss_pred CCcEEEEE-EeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEe---CCCcEEEEEeecCCCc---ccc---eE
Q 036510 184 DNTVKVWK-LYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASAS---EDGKVIIWTVAREGDQ---WEG---KV 253 (288)
Q Consensus 184 d~~i~iwd-~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s---~D~~i~iw~~~~~~~~---~~~---~~ 253 (288)
+...+++. ...+......+.... -...|.++.+|||+ ..+|... .++.|.+=-+...... ... ..
T Consensus 86 ~~~~~~~~~~~~g~~~~~~v~~~~-~~~~I~~l~vSpDG----~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~ 160 (253)
T PF10647_consen 86 SGGVRVVRDSASGTGEPVEVDWPG-LRGRITALRVSPDG----TRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRV 160 (253)
T ss_pred CCceEEEEecCCCcceeEEecccc-cCCceEEEEECCCC----cEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEe
Confidence 44455552 222211111111111 11179999999985 4555544 4577877766543221 000 11
Q ss_pred eeccccCeEEEEeecCCCEEEEEeCCCc
Q 036510 254 LHDFKTPVYRVSWSLTGNILAVADGNNN 281 (288)
Q Consensus 254 ~~~~~~~i~~~~~spdg~~l~s~~~d~~ 281 (288)
.......+..++|.+++++++.+...+.
T Consensus 161 ~~~~~~~v~~v~W~~~~~L~V~~~~~~~ 188 (253)
T PF10647_consen 161 APPLLSDVTDVAWSDDSTLVVLGRSAGG 188 (253)
T ss_pred cccccCcceeeeecCCCEEEEEeCCCCC
Confidence 1122357899999999998887765443
No 376
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=92.50 E-value=4 Score=36.57 Aligned_cols=64 Identities=14% Similarity=0.102 Sum_probs=31.1
Q ss_pred cceEEEEecCCCCCCCcEEEEEe-CCCcEEEEEeecCCCcccceEee-c---------------cccCeEEEEeecCCCE
Q 036510 210 DWVRDVAWAPNLGLPKSTIASAS-EDGKVIIWTVAREGDQWEGKVLH-D---------------FKTPVYRVSWSLTGNI 272 (288)
Q Consensus 210 ~~V~~v~~sp~~~~~~~~l~s~s-~D~~i~iw~~~~~~~~~~~~~~~-~---------------~~~~i~~~~~spdg~~ 272 (288)
.-|.++..|.|. ++|=..+ .+|.||.||++....+.....+. + ..+...-+..|.||++
T Consensus 312 ~LitDI~iSlDD----rfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkR 387 (461)
T PF05694_consen 312 PLITDILISLDD----RFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKR 387 (461)
T ss_dssp -----EEE-TTS-----EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSE
T ss_pred CceEeEEEccCC----CEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeE
Confidence 447888898873 4444444 59999999999865442211111 0 0111245788899999
Q ss_pred EEEEe
Q 036510 273 LAVAD 277 (288)
Q Consensus 273 l~s~~ 277 (288)
|.+..
T Consensus 388 lYvTn 392 (461)
T PF05694_consen 388 LYVTN 392 (461)
T ss_dssp EEEE-
T ss_pred EEEEe
Confidence 88774
No 377
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=92.02 E-value=12 Score=35.95 Aligned_cols=125 Identities=14% Similarity=0.137 Sum_probs=73.7
Q ss_pred CeEEEEecCCCCCCEEEEeeCCCcEEEeecCC-------C---Cc--e-----EEeEEeecCCCceeEEEeccCCCCeEE
Q 036510 57 AVWEVAWAHPKFGSILASCSFDGTVIIWKEGN-------S---NE--W-----IKDHVFEDHKSSVNSIDWAPHELGLCL 119 (288)
Q Consensus 57 ~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~-------~---~~--~-----~~~~~~~~h~~~v~~l~~~p~~~~~~l 119 (288)
.|+.+....-...++|+.|.+||.|.+|.... . .. . .+...+. ....+++|+++-....+++
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlI 180 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLI 180 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEE
Confidence 35666544323467999999999999996521 0 00 0 0001111 2347899999822336788
Q ss_pred EEEeCCCcEEEEeecCC-CCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCC-ceeEEeecCCcEEEEEE
Q 036510 120 ACGSSDGNISVFTARAD-GGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPV-QKLCSGGCDNTVKVWKL 192 (288)
Q Consensus 120 ~sg~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~-~~l~s~~~d~~i~iwd~ 192 (288)
|++++...|.||-.... ...... ....|.-.|-+|+|-++..... + ..++..+..|.+-+|++
T Consensus 181 AVSsNs~~VTVFaf~l~~~r~~~~-~s~~~~hNIP~VSFl~~~~d~~---------G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 181 AVSSNSQEVTVFAFALVDERFYHV-PSHQHSHNIPNVSFLDDDLDPN---------GHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEecCCceEEEEEEeccccccccc-cccccccCCCeeEeecCCCCCc---------cceEEEEEeccCcEEEEEE
Confidence 98988889988876542 111111 0112333477888876652111 1 25777888999888887
No 378
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.72 E-value=2.6 Score=37.74 Aligned_cols=124 Identities=13% Similarity=0.196 Sum_probs=75.2
Q ss_pred ccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCcee--eEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEe
Q 036510 7 ETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQH--LAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIW 84 (288)
Q Consensus 7 ~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iw 84 (288)
..--+++|.+++||+|.+.||.--.|++|.+.+........ .+.-...+..|.+.+|++ +.-+|..+..| +-+|
T Consensus 62 dm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~---s~e~A~i~~~G-~e~y 137 (657)
T KOG2377|consen 62 DMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTS---STEIAFITDQG-IEFY 137 (657)
T ss_pred eecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEec---CeeEEEEecCC-eEEE
Confidence 33456799999999999999999999999999874322111 112223456688899985 34555544433 4455
Q ss_pred ecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCC
Q 036510 85 KEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARAD 136 (288)
Q Consensus 85 d~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~ 136 (288)
...... ...+..+.|.-.|+.-.|+++..-.+|+++-..+++.=+.++.+
T Consensus 138 ~v~pek--rslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 138 QVLPEK--RSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred EEchhh--hhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence 432211 12233445777888899998743334444445555555555443
No 379
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.22 E-value=1.5 Score=43.52 Aligned_cols=103 Identities=14% Similarity=0.092 Sum_probs=66.2
Q ss_pred eEEeecCCcEEEEEEeCCcee----eeeee---ccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCccc
Q 036510 178 LCSGGCDNTVKVWKLYNGIWK----MDCFP---ALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWE 250 (288)
Q Consensus 178 l~s~~~d~~i~iwd~~~~~~~----~~~~~---~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~ 250 (288)
++..+.+..|..+|+++-... ...+. ........+.++.|+|.- +...|....|+.|++..+......
T Consensus 117 v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~v---p~n~av~l~dlsl~V~~~~~~~~~-- 191 (1405)
T KOG3630|consen 117 VVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLV---PLNSAVDLSDLSLRVKSTKQLAQN-- 191 (1405)
T ss_pred EEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCc---cchhhhhccccchhhhhhhhhhhh--
Confidence 344444557889998642100 01011 111223356788999974 457888999999999877642111
Q ss_pred ceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510 251 GKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE 286 (288)
Q Consensus 251 ~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~ 286 (288)
.....+....++++|+|.|++++.|-.+|++.=|.
T Consensus 192 -v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~ 226 (1405)
T KOG3630|consen 192 -VTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYE 226 (1405)
T ss_pred -hcccCcccceeeEEeccccceeeEecCCCeEEEee
Confidence 11123456789999999999999999999876553
No 380
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=91.16 E-value=1.1 Score=36.23 Aligned_cols=65 Identities=11% Similarity=0.158 Sum_probs=38.6
Q ss_pred CCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCC
Q 036510 23 GKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNS 89 (288)
Q Consensus 23 g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~ 89 (288)
++.++.|..++.|.+|.+... +........-...| .+.+..-.++.+..+++.|+.|+.|+....
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~-g~~~d~~~s~~e~i-~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~ 134 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLE-GAHSDRVCSGEESI-DLGIPNGRDSSLGCVGAQDGRIRACNIKPN 134 (238)
T ss_pred CceEEeecccceEEEecCCcc-chHHHhhhcccccc-eeccccccccceeEEeccCCceeeeccccC
Confidence 567888999999999987521 11111111111122 223322224567888999999999987643
No 381
>PRK02888 nitrous-oxide reductase; Validated
Probab=91.05 E-value=9.5 Score=35.97 Aligned_cols=97 Identities=14% Similarity=0.110 Sum_probs=60.6
Q ss_pred CCcEEEEEEeC----CceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcc------cceE
Q 036510 184 DNTVKVWKLYN----GIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQW------EGKV 253 (288)
Q Consensus 184 d~~i~iwd~~~----~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~------~~~~ 253 (288)
++.|.+.|.++ +. +....+.. ......|.++||++ ..++++..+.++.|.|+++.+... +..+
T Consensus 295 gn~V~VID~~t~~~~~~---~v~~yIPV-GKsPHGV~vSPDGk---ylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~v 367 (635)
T PRK02888 295 GSKVPVVDGRKAANAGS---ALTRYVPV-PKNPHGVNTSPDGK---YFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAV 367 (635)
T ss_pred CCEEEEEECCccccCCc---ceEEEEEC-CCCccceEECCCCC---EEEEeCCCCCcEEEEEChhhhhhhhccCCccceE
Confidence 56788888776 21 12222221 12246789999962 345555569999999998643211 1111
Q ss_pred eecc--ccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510 254 LHDF--KTPVYRVSWSLTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 254 ~~~~--~~~i~~~~~spdg~~l~s~~~d~~v~~w~~ 287 (288)
..+. +....-.+|.++|+...+--.|..|-.|++
T Consensus 368 vaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~ 403 (635)
T PRK02888 368 VAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNI 403 (635)
T ss_pred EEeeccCCCcceEEECCCCCEEEeEeecceeEEEeh
Confidence 2211 223346799999998888888999999985
No 382
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=90.95 E-value=7.6 Score=33.41 Aligned_cols=95 Identities=13% Similarity=0.110 Sum_probs=53.5
Q ss_pred cceEEEEEcCCCCEEEEeeCC-CcEEEEEeCCCCc-----eeeEEEeccccCeEEEEecCCCCCCEEEEeeCCC-cEEEe
Q 036510 12 DTVHDVAMDYYGKRLATASSD-YSIKIIGVGNNTS-----QHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDG-TVIIW 84 (288)
Q Consensus 12 ~~v~~~~~s~~g~~l~s~~~d-~~i~lwd~~~~~~-----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~-~v~iw 84 (288)
..-++|+|||||+.|..+... +.|.-++++...+ ........+.+..-.++.. .+|.+.+++-.+| .|.+|
T Consensus 163 ~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vD--adG~lw~~a~~~g~~v~~~ 240 (307)
T COG3386 163 TIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVD--ADGNLWVAAVWGGGRVVRF 240 (307)
T ss_pred EecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEe--CCCCEEEecccCCceEEEE
Confidence 344678999999777666554 6666666642111 1122222233444455543 3477775444443 88898
Q ss_pred ecCCCCceEEeEEeecCCCceeEEEecc
Q 036510 85 KEGNSNEWIKDHVFEDHKSSVNSIDWAP 112 (288)
Q Consensus 85 d~~~~~~~~~~~~~~~h~~~v~~l~~~p 112 (288)
+.. +. +...+..+...+++++|--
T Consensus 241 ~pd-G~---l~~~i~lP~~~~t~~~FgG 264 (307)
T COG3386 241 NPD-GK---LLGEIKLPVKRPTNPAFGG 264 (307)
T ss_pred CCC-Cc---EEEEEECCCCCCccceEeC
Confidence 875 44 3344444545677777743
No 383
>PHA02790 Kelch-like protein; Provisional
Probab=90.38 E-value=12 Score=34.36 Aligned_cols=106 Identities=9% Similarity=0.047 Sum_probs=50.5
Q ss_pred CCCEEEEeeCC--CcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCC---cEEEeecCCCCceEEeE
Q 036510 22 YGKRLATASSD--YSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDG---TVIIWKEGNSNEWIKDH 96 (288)
Q Consensus 22 ~g~~l~s~~~d--~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~---~v~iwd~~~~~~~~~~~ 96 (288)
+|+..+.||.+ .++..||........+..+.........+.. ++.+.+.|+.++ ++..||..+ +.|....
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~----~g~IYviGG~~~~~~~ve~ydp~~-~~W~~~~ 392 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASI----NNVIYVIGGHSETDTTTEYLLPNH-DQWQFGP 392 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEE----CCEEEEecCcCCCCccEEEEeCCC-CEEEeCC
Confidence 56667777754 3466676533323222222211111112222 267778887653 466788764 4454322
Q ss_pred EeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCee
Q 036510 97 VFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWD 140 (288)
Q Consensus 97 ~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~ 140 (288)
.+.........+.+ + +.+.+.|+ ....||.+++ .|.
T Consensus 393 ~m~~~r~~~~~~~~--~--~~IYv~GG---~~e~ydp~~~-~W~ 428 (480)
T PHA02790 393 STYYPHYKSCALVF--G--RRLFLVGR---NAEFYCESSN-TWT 428 (480)
T ss_pred CCCCccccceEEEE--C--CEEEEECC---ceEEecCCCC-cEe
Confidence 22211111112222 2 45566663 4678887643 454
No 384
>PHA03098 kelch-like protein; Provisional
Probab=89.98 E-value=16 Score=33.93 Aligned_cols=106 Identities=10% Similarity=0.030 Sum_probs=48.4
Q ss_pred CCCEEEEeeCC-----CcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCC------CcEEEeecCCCC
Q 036510 22 YGKRLATASSD-----YSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFD------GTVIIWKEGNSN 90 (288)
Q Consensus 22 ~g~~l~s~~~d-----~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d------~~v~iwd~~~~~ 90 (288)
+++.++.||.+ .++..||...........+.........+.. ++.+++.|+.+ ..+..||+.+ +
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~----~~~iYv~GG~~~~~~~~~~v~~yd~~t-~ 416 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNV----NNLIYVIGGISKNDELLKTVECFSLNT-N 416 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEE----CCEEEEECCcCCCCcccceEEEEeCCC-C
Confidence 46677777765 3355666543333222222111111111221 25677777732 4577888765 3
Q ss_pred ceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCC--------cEEEEeecCC
Q 036510 91 EWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDG--------NISVFTARAD 136 (288)
Q Consensus 91 ~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~--------~i~i~d~~~~ 136 (288)
.|.....++...... ++... + +.+++.||..+ .+..||..++
T Consensus 417 ~W~~~~~~p~~r~~~-~~~~~-~--~~iyv~GG~~~~~~~~~~~~v~~yd~~~~ 466 (534)
T PHA03098 417 KWSKGSPLPISHYGG-CAIYH-D--GKIYVIGGISYIDNIKVYNIVESYNPVTN 466 (534)
T ss_pred eeeecCCCCccccCc-eEEEE-C--CEEEEECCccCCCCCcccceEEEecCCCC
Confidence 454332222111111 22222 2 45556665432 3777877653
No 385
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=89.94 E-value=9.7 Score=31.24 Aligned_cols=101 Identities=13% Similarity=0.054 Sum_probs=60.6
Q ss_pred EEEEcCCCCE-EEEeeCCCcEEEEEeCCCCc-----eeeEEEec-----cccCeEEEEecCCCCCCEEEEeeCCCcEEEe
Q 036510 16 DVAMDYYGKR-LATASSDYSIKIIGVGNNTS-----QHLAKLSG-----HKGAVWEVAWAHPKFGSILASCSFDGTVIIW 84 (288)
Q Consensus 16 ~~~~s~~g~~-l~s~~~d~~i~lwd~~~~~~-----~~~~~~~~-----h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iw 84 (288)
++.|+.+.+. .+.-+.+-+|.-||.+-+++ +.+..+.. |.. -..++. +.+|.+++++-..++|...
T Consensus 162 gl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~-PDGm~I--D~eG~L~Va~~ng~~V~~~ 238 (310)
T KOG4499|consen 162 GLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLE-PDGMTI--DTEGNLYVATFNGGTVQKV 238 (310)
T ss_pred cccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCC-CCcceE--ccCCcEEEEEecCcEEEEE
Confidence 4567766544 45566777887788543322 22333321 111 112232 2358899999999999999
Q ss_pred ecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEE
Q 036510 85 KEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACG 122 (288)
Q Consensus 85 d~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg 122 (288)
|+.+++ ....++.....|+|++|-..+...+.+++
T Consensus 239 dp~tGK---~L~eiklPt~qitsccFgGkn~d~~yvT~ 273 (310)
T KOG4499|consen 239 DPTTGK---ILLEIKLPTPQITSCCFGGKNLDILYVTT 273 (310)
T ss_pred CCCCCc---EEEEEEcCCCceEEEEecCCCccEEEEEe
Confidence 998776 44556667889999999654323333333
No 386
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=89.82 E-value=12 Score=32.02 Aligned_cols=242 Identities=13% Similarity=0.125 Sum_probs=116.0
Q ss_pred EEEEEcCCCCEEEEeeCCCcEEEEEeC-----CCCceeeEEEec-----cccCeEEEEecCCC----------CCCEEEE
Q 036510 15 HDVAMDYYGKRLATASSDYSIKIIGVG-----NNTSQHLAKLSG-----HKGAVWEVAWAHPK----------FGSILAS 74 (288)
Q Consensus 15 ~~~~~s~~g~~l~s~~~d~~i~lwd~~-----~~~~~~~~~~~~-----h~~~v~~~~~~~~~----------~~~~l~s 74 (288)
..|+++|.+...++...-+...+||.+ .-..+.+.++.+ -....+.+.|+... ....|+.
T Consensus 26 WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif 105 (336)
T TIGR03118 26 WGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLF 105 (336)
T ss_pred ceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEE
Confidence 578999999999998888999999985 212233444442 12345667765321 1234788
Q ss_pred eeCCCcEEEeecCCCCce--EEeEEeec-CCC-ceeEEEeccCCC-CeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCC
Q 036510 75 CSFDGTVIIWKEGNSNEW--IKDHVFED-HKS-SVNSIDWAPHEL-GLCLACGSSDGNISVFTARADGGWDTSRIDQAHP 149 (288)
Q Consensus 75 ~s~d~~v~iwd~~~~~~~--~~~~~~~~-h~~-~v~~l~~~p~~~-~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~ 149 (288)
+++||+|.-|...-..+- .....+.. -.. ....+++.+.+. ..+.++-=..++|.+||-. +.+........
T Consensus 106 ~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~----f~~~~~~g~F~ 181 (336)
T TIGR03118 106 VTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS----FRPPPLPGSFI 181 (336)
T ss_pred EeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc----cccccCCCCcc
Confidence 999999999985432210 01111211 112 233455543322 2333333445677777643 11111111111
Q ss_pred CCeeEEEeCCCCC---CCce-eccccc-CCCceeEEeecCCcEEEEEEeCCceeeeeeecc--ccCCcceEEEEecCCC-
Q 036510 150 VGVTSVSWAPSTA---PGAL-VGSGFL-DPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPAL--QMHTDWVRDVAWAPNL- 221 (288)
Q Consensus 150 ~~v~~i~~~p~~~---~~~~-~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~h~~~V~~v~~sp~~- 221 (288)
++-.-..|.|..- .+.+ +....- .+.+.=+.|-.-+.|-++|.... +++.+ .+.-+.=+.+...|..
T Consensus 182 DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~-----l~~r~as~g~LNaPWG~a~APa~F 256 (336)
T TIGR03118 182 DPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQ-----LLRRVASSGRLNAPWGLAIAPESF 256 (336)
T ss_pred CCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCc-----EEEEeccCCcccCCceeeeChhhh
Confidence 1111111222210 0000 000000 11122334455667888887543 22222 2333333556666632
Q ss_pred -CCCCcEEEEEe-CCCcEEEEEeecCCCcccceEeecccc-----CeEEEEeec
Q 036510 222 -GLPKSTIASAS-EDGKVIIWTVAREGDQWEGKVLHDFKT-----PVYRVSWSL 268 (288)
Q Consensus 222 -~~~~~~l~s~s-~D~~i~iw~~~~~~~~~~~~~~~~~~~-----~i~~~~~sp 268 (288)
...+. |+.|. .||+|..+|..+.. ....+...... -++.++|..
T Consensus 257 G~~sg~-lLVGNFGDG~InaFD~~sG~--~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 257 GSLSGA-LLVGNFGDGTINAYDPQSGA--QLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CCCCCC-eEEeecCCceeEEecCCCCc--eeeeecCCCCCeEEecCeEEeeeCC
Confidence 12344 55565 59999999987532 11222222222 357888875
No 387
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=89.66 E-value=11 Score=31.37 Aligned_cols=165 Identities=11% Similarity=0.108 Sum_probs=84.1
Q ss_pred ccccccceEEEEEcCCCC-EEEEeeCCCcEEEEEeCCCCceeeEEE--eccccCeEEEEecCCCCCCEEEEeeCCCcEEE
Q 036510 7 ETGHEDTVHDVAMDYYGK-RLATASSDYSIKIIGVGNNTSQHLAKL--SGHKGAVWEVAWAHPKFGSILASCSFDGTVII 83 (288)
Q Consensus 7 ~~~h~~~v~~~~~s~~g~-~l~s~~~d~~i~lwd~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~i 83 (288)
+.+-.+.+.+++++|+.+ +++.....+.|.-.+.+ ++.+..+ .+ .+..=+|++..+ +.++++--.++.+.+
T Consensus 17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~---G~vlr~i~l~g-~~D~EgI~y~g~--~~~vl~~Er~~~L~~ 90 (248)
T PF06977_consen 17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD---GKVLRRIPLDG-FGDYEGITYLGN--GRYVLSEERDQRLYI 90 (248)
T ss_dssp -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT-----EEEEEE-SS--SSEEEEEE-ST--TEEEEEETTTTEEEE
T ss_pred CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC---CCEEEEEeCCC-CCCceeEEEECC--CEEEEEEcCCCcEEE
Confidence 345566799999999765 45555566666555543 3444444 34 345678888642 555554445899999
Q ss_pred eecCCCCceE---EeEEee-----cCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecC---CCCeeeEEe-----ecc
Q 036510 84 WKEGNSNEWI---KDHVFE-----DHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARA---DGGWDTSRI-----DQA 147 (288)
Q Consensus 84 wd~~~~~~~~---~~~~~~-----~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~---~~~~~~~~~-----~~~ 147 (288)
.++...+... ....+. .+...+-.++|.|.. +.+++ +-......+|.++. ......... ...
T Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~-~~L~v-~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (248)
T PF06977_consen 91 FTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKT-NRLFV-AKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKL 168 (248)
T ss_dssp EEE----TT--EEEEEEEE---S---SS--EEEEEETTT-TEEEE-EEESSSEEEEEEESTT-SS--EEEE-HHHH-HT-
T ss_pred EEEeccccccchhhceEEecccccCCCcceEEEEEcCCC-CEEEE-EeCCCChhhEEEccccCccceeeccccccccccc
Confidence 8874322111 111111 244568899999974 44443 44556677777754 111111110 011
Q ss_pred CCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEE
Q 036510 148 HPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKL 192 (288)
Q Consensus 148 ~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~ 192 (288)
....+..+.+.|.. +++++-+...+.|-.+|.
T Consensus 169 ~~~d~S~l~~~p~t-------------~~lliLS~es~~l~~~d~ 200 (248)
T PF06977_consen 169 FVRDLSGLSYDPRT-------------GHLLILSDESRLLLELDR 200 (248)
T ss_dssp -SS---EEEEETTT-------------TEEEEEETTTTEEEEE-T
T ss_pred eeccccceEEcCCC-------------CeEEEEECCCCeEEEECC
Confidence 22346677777775 267777788888888883
No 388
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=88.10 E-value=15 Score=32.88 Aligned_cols=82 Identities=21% Similarity=0.290 Sum_probs=43.1
Q ss_pred cEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCC---------c--EEEEEeecCCCcccceEe
Q 036510 186 TVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDG---------K--VIIWTVAREGDQWEGKVL 254 (288)
Q Consensus 186 ~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~---------~--i~iw~~~~~~~~~~~~~~ 254 (288)
.+++.|+.++..... .+..-. -..+.|.+++ +.|.-...|. . |+.|++-.. ..+..++
T Consensus 151 ~l~v~Dl~tg~~l~d---~i~~~~--~~~~~W~~d~----~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~--~~~d~lv 219 (414)
T PF02897_consen 151 TLRVFDLETGKFLPD---GIENPK--FSSVSWSDDG----KGFFYTRFDEDQRTSDSGYPRQVYRHKLGTP--QSEDELV 219 (414)
T ss_dssp EEEEEETTTTEEEEE---EEEEEE--SEEEEECTTS----SEEEEEECSTTTSS-CCGCCEEEEEEETTS---GGG-EEE
T ss_pred EEEEEECCCCcCcCC---cccccc--cceEEEeCCC----CEEEEEEeCcccccccCCCCcEEEEEECCCC--hHhCeeE
Confidence 499999988742211 111111 1238999984 3454444333 2 555554332 2232344
Q ss_pred ecc-ccC--eEEEEeecCCCEEEEEeC
Q 036510 255 HDF-KTP--VYRVSWSLTGNILAVADG 278 (288)
Q Consensus 255 ~~~-~~~--i~~~~~spdg~~l~s~~~ 278 (288)
.+. ... ...+..++||++|...+.
T Consensus 220 fe~~~~~~~~~~~~~s~d~~~l~i~~~ 246 (414)
T PF02897_consen 220 FEEPDEPFWFVSVSRSKDGRYLFISSS 246 (414)
T ss_dssp EC-TTCTTSEEEEEE-TTSSEEEEEEE
T ss_pred EeecCCCcEEEEEEecCcccEEEEEEE
Confidence 433 222 578999999999776543
No 389
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=88.07 E-value=2.4 Score=23.59 Aligned_cols=27 Identities=15% Similarity=0.316 Sum_probs=19.3
Q ss_pred cCeEEEEeecCCCEEEEEeC-C--CcEEEe
Q 036510 259 TPVYRVSWSLTGNILAVADG-N--NNVTLW 285 (288)
Q Consensus 259 ~~i~~~~~spdg~~l~s~~~-d--~~v~~w 285 (288)
.......|||||++|+-++. + |.-.||
T Consensus 9 ~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 9 GDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 45678999999998877764 4 666666
No 390
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=87.25 E-value=29 Score=33.71 Aligned_cols=41 Identities=12% Similarity=0.263 Sum_probs=32.0
Q ss_pred cCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCc
Q 036510 207 MHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQ 248 (288)
Q Consensus 207 ~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~ 248 (288)
.+...|..+.|+|.+ ..+..|+.-..|+++|+||+.....+
T Consensus 144 ~~~~~i~qv~WhP~s-~~~~~l~vLtsdn~lR~y~~~~~~~p 184 (717)
T PF10168_consen 144 NSSLEIKQVRWHPWS-ESDSHLVVLTSDNTLRLYDISDPQHP 184 (717)
T ss_pred CCCceEEEEEEcCCC-CCCCeEEEEecCCEEEEEecCCCCCC
Confidence 345579999999974 23578999999999999999865433
No 391
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=86.94 E-value=17 Score=30.34 Aligned_cols=139 Identities=20% Similarity=0.212 Sum_probs=70.9
Q ss_pred CeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCC
Q 036510 116 GLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNG 195 (288)
Q Consensus 116 ~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 195 (288)
+..++.|+.+| |.+|+....... .+.. +...|..+...|+- +.|+.= .|+.+.++++..-
T Consensus 7 ~~~L~vGt~~G-l~~~~~~~~~~~--~~i~--~~~~I~ql~vl~~~--------------~~llvL-sd~~l~~~~L~~l 66 (275)
T PF00780_consen 7 GDRLLVGTEDG-LYVYDLSDPSKP--TRIL--KLSSITQLSVLPEL--------------NLLLVL-SDGQLYVYDLDSL 66 (275)
T ss_pred CCEEEEEECCC-EEEEEecCCccc--eeEe--ecceEEEEEEeccc--------------CEEEEE-cCCccEEEEchhh
Confidence 55678888888 888888332221 1111 22338888777654 333332 3599999998542
Q ss_pred ceeeee---e-------eccccCCcceEEEE-ecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeec--cccCeE
Q 036510 196 IWKMDC---F-------PALQMHTDWVRDVA-WAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHD--FKTPVY 262 (288)
Q Consensus 196 ~~~~~~---~-------~~~~~h~~~V~~v~-~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~--~~~~i~ 262 (288)
...... . .........|..++ -... .+...+.....++|.+|......... ....++ ....+.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~---~~~~~L~va~kk~i~i~~~~~~~~~f-~~~~ke~~lp~~~~ 142 (275)
T PF00780_consen 67 EPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGH---EGSRRLCVAVKKKILIYEWNDPRNSF-SKLLKEISLPDPPS 142 (275)
T ss_pred ccccccccccccccccccccccccCCeeEEeecccc---ccceEEEEEECCEEEEEEEECCcccc-cceeEEEEcCCCcE
Confidence 110000 0 00001111233333 1111 12334445555599999887632111 012222 246788
Q ss_pred EEEeecCCCEEEEEeCCC
Q 036510 263 RVSWSLTGNILAVADGNN 280 (288)
Q Consensus 263 ~~~~spdg~~l~s~~~d~ 280 (288)
.++|. ++.|+.|..++
T Consensus 143 ~i~~~--~~~i~v~~~~~ 158 (275)
T PF00780_consen 143 SIAFL--GNKICVGTSKG 158 (275)
T ss_pred EEEEe--CCEEEEEeCCc
Confidence 89998 77777776543
No 392
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.39 E-value=6.3 Score=39.40 Aligned_cols=129 Identities=16% Similarity=0.193 Sum_probs=74.9
Q ss_pred eCCCcEEEEeecCCCC--eeeEEeec------cCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeC
Q 036510 123 SSDGNISVFTARADGG--WDTSRIDQ------AHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYN 194 (288)
Q Consensus 123 ~~d~~i~i~d~~~~~~--~~~~~~~~------~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 194 (288)
+++-.|..||+++-.. ......+. .-.....++.|+|.-+ ...+....|..|++.-+..
T Consensus 121 sng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp-------------~n~av~l~dlsl~V~~~~~ 187 (1405)
T KOG3630|consen 121 SNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVP-------------LNSAVDLSDLSLRVKSTKQ 187 (1405)
T ss_pred cCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCcc-------------chhhhhccccchhhhhhhh
Confidence 4444788899875211 11111111 2234566788988753 2345556688887765533
Q ss_pred CceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeecc----ccCeEEEEeecCC
Q 036510 195 GIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDF----KTPVYRVSWSLTG 270 (288)
Q Consensus 195 ~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~----~~~i~~~~~spdg 270 (288)
.. .....+ .....+.+|+|+|- +.+++.|-..|++..|..... .+..+.+. .-.|.+|+|-...
T Consensus 188 ~~---~~v~s~-p~t~~~Tav~WSpr----GKQl~iG~nnGt~vQy~P~le----ik~~ip~Pp~~e~yrvl~v~Wl~t~ 255 (1405)
T KOG3630|consen 188 LA---QNVTSF-PVTNSQTAVLWSPR----GKQLFIGRNNGTEVQYEPSLE----IKSEIPEPPVEENYRVLSVTWLSTQ 255 (1405)
T ss_pred hh---hhhccc-CcccceeeEEeccc----cceeeEecCCCeEEEeecccc----eeecccCCCcCCCcceeEEEEecce
Confidence 11 011111 12345799999996 478999999999999987632 11222221 2358889997777
Q ss_pred CEEEEE
Q 036510 271 NILAVA 276 (288)
Q Consensus 271 ~~l~s~ 276 (288)
.++++=
T Consensus 256 eflvvy 261 (1405)
T KOG3630|consen 256 EFLVVY 261 (1405)
T ss_pred eEEEEe
Confidence 666543
No 393
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=84.86 E-value=14 Score=33.21 Aligned_cols=48 Identities=13% Similarity=0.113 Sum_probs=33.6
Q ss_pred ccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEecccc
Q 036510 7 ETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKG 56 (288)
Q Consensus 7 ~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~ 56 (288)
+......+.+++.+|++++.|....=|.|.|+|+... ..++-.+|..+
T Consensus 303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~--~vvrmWKGYRd 350 (415)
T PF14655_consen 303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARG--IVVRMWKGYRD 350 (415)
T ss_pred eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCC--hhhhhhccCcc
Confidence 3345567888999999998888777788999998543 33444444443
No 394
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=84.64 E-value=25 Score=30.21 Aligned_cols=234 Identities=11% Similarity=0.206 Sum_probs=99.0
Q ss_pred ccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCC-C-CceeeE-EEecc-ccCeEEEEecCCCCCCEEEEeeCCCcEEEe
Q 036510 9 GHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGN-N-TSQHLA-KLSGH-KGAVWEVAWAHPKFGSILASCSFDGTVIIW 84 (288)
Q Consensus 9 ~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~-~-~~~~~~-~~~~h-~~~v~~~~~~~~~~~~~l~s~s~d~~v~iw 84 (288)
+-+..+..|.|....+-++.|. .++ |+.... + +.+... ....- .-..+.+.|.. .+.++. +..+.+ +.
T Consensus 14 ~t~~~l~dV~F~d~~~G~~VG~-~g~--il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~---~~g~iv-G~~g~l-l~ 85 (302)
T PF14870_consen 14 PTDKPLLDVAFVDPNHGWAVGA-YGT--ILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDG---NEGWIV-GEPGLL-LH 85 (302)
T ss_dssp S-SS-EEEEEESSSS-EEEEET-TTE--EEEESSTTSS-EE-----S-----EEEEEEEET---TEEEEE-EETTEE-EE
T ss_pred CCCCceEEEEEecCCEEEEEec-CCE--EEEECCCCccccccccCCCccceeeEEEEEecC---CceEEE-cCCceE-EE
Confidence 4566888999985555566554 454 344322 1 222211 11110 12356777752 344444 444543 33
Q ss_pred ecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecC-CCCeeeEEeeccCCCCeeEEEeCCCCCC
Q 036510 85 KEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARA-DGGWDTSRIDQAHPVGVTSVSWAPSTAP 163 (288)
Q Consensus 85 d~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~v~~i~~~p~~~~ 163 (288)
....+..|..+..-..-......+....+ ...++.+ ..|. ||-... +..|.... ..-...+..+..++++
T Consensus 86 T~DgG~tW~~v~l~~~lpgs~~~i~~l~~--~~~~l~~-~~G~--iy~T~DgG~tW~~~~--~~~~gs~~~~~r~~dG-- 156 (302)
T PF14870_consen 86 TTDGGKTWERVPLSSKLPGSPFGITALGD--GSAELAG-DRGA--IYRTTDGGKTWQAVV--SETSGSINDITRSSDG-- 156 (302)
T ss_dssp ESSTTSS-EE----TT-SS-EEEEEEEET--TEEEEEE-TT----EEEESSTTSSEEEEE---S----EEEEEE-TTS--
T ss_pred ecCCCCCcEEeecCCCCCCCeeEEEEcCC--CcEEEEc-CCCc--EEEeCCCCCCeeEcc--cCCcceeEeEEECCCC--
Confidence 33345566543211111122233332222 3333333 3444 454544 34565432 2333557777777765
Q ss_pred CceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEee
Q 036510 164 GALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVA 243 (288)
Q Consensus 164 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~ 243 (288)
++++.++.-+.+.-||--...+... . +.-..+|.++.|.|+. .|-.....+.|+.=+..
T Consensus 157 ------------~~vavs~~G~~~~s~~~G~~~w~~~---~-r~~~~riq~~gf~~~~-----~lw~~~~Gg~~~~s~~~ 215 (302)
T PF14870_consen 157 ------------RYVAVSSRGNFYSSWDPGQTTWQPH---N-RNSSRRIQSMGFSPDG-----NLWMLARGGQIQFSDDP 215 (302)
T ss_dssp -------------EEEEETTSSEEEEE-TT-SS-EEE---E---SSS-EEEEEE-TTS------EEEEETTTEEEEEE-T
T ss_pred ------------cEEEEECcccEEEEecCCCccceEE---c-cCccceehhceecCCC-----CEEEEeCCcEEEEccCC
Confidence 6666665555555676322222211 1 2234579999999983 34445588888876511
Q ss_pred cCCCcccceEeecc--cc-CeEEEEeecCCCEEEEEeCCCcE
Q 036510 244 REGDQWEGKVLHDF--KT-PVYRVSWSLTGNILAVADGNNNV 282 (288)
Q Consensus 244 ~~~~~~~~~~~~~~--~~-~i~~~~~spdg~~l~s~~~d~~v 282 (288)
.....+.. .+.+. .. -+..++|.++++.+|+|+. |++
T Consensus 216 ~~~~~w~~-~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l 255 (302)
T PF14870_consen 216 DDGETWSE-PIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL 255 (302)
T ss_dssp TEEEEE----B-TTSS--S-EEEEEESSSS-EEEEEST-T-E
T ss_pred CCcccccc-ccCCcccCceeeEEEEecCCCCEEEEeCC-ccE
Confidence 11011111 11111 12 3789999999999887754 444
No 395
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=84.59 E-value=22 Score=29.60 Aligned_cols=148 Identities=14% Similarity=0.196 Sum_probs=79.0
Q ss_pred CCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEe-----
Q 036510 21 YYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKD----- 95 (288)
Q Consensus 21 ~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~----- 95 (288)
..++.|+.|..+| +.+++..... ...... +...|..+...+. -+.|+.-+ |+.+.++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~-~~~~i~--~~~~I~ql~vl~~--~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~ 77 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPS-KPTRIL--KLSSITQLSVLPE--LNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAF 77 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCc-cceeEe--ecceEEEEEEecc--cCEEEEEc-CCccEEEEchhhccccccccccc
Confidence 3578888898887 8888883221 222222 2334888888754 34444443 499999997543211100
Q ss_pred -------EEeecCCCceeEEE-eccCCCCeEEEEEeCCCcEEEEeecCCC-Ce-eeEEeeccCCCCeeEEEeCCCCCCCc
Q 036510 96 -------HVFEDHKSSVNSID-WAPHELGLCLACGSSDGNISVFTARADG-GW-DTSRIDQAHPVGVTSVSWAPSTAPGA 165 (288)
Q Consensus 96 -------~~~~~h~~~v~~l~-~~p~~~~~~l~sg~~d~~i~i~d~~~~~-~~-~~~~~~~~~~~~v~~i~~~p~~~~~~ 165 (288)
..+ .....+...+ -.+......++ ....++|.+|...... .. ... ..-..+..+.++.|.+
T Consensus 78 ~~~~~~~~~~-~~~~~v~~f~~~~~~~~~~~L~-va~kk~i~i~~~~~~~~~f~~~~-ke~~lp~~~~~i~~~~------ 148 (275)
T PF00780_consen 78 PKSRSLPTKL-PETKGVSFFAVNGGHEGSRRLC-VAVKKKILIYEWNDPRNSFSKLL-KEISLPDPPSSIAFLG------ 148 (275)
T ss_pred cccccccccc-cccCCeeEEeeccccccceEEE-EEECCEEEEEEEECCccccccee-EEEEcCCCcEEEEEeC------
Confidence 011 1122333333 11222233344 3445689998886532 22 111 1123456688888874
Q ss_pred eecccccCCCceeEEeecCCcEEEEEEeCC
Q 036510 166 LVGSGFLDPVQKLCSGGCDNTVKVWKLYNG 195 (288)
Q Consensus 166 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 195 (288)
+.++.|..+ ...+.|+.++
T Consensus 149 ----------~~i~v~~~~-~f~~idl~~~ 167 (275)
T PF00780_consen 149 ----------NKICVGTSK-GFYLIDLNTG 167 (275)
T ss_pred ----------CEEEEEeCC-ceEEEecCCC
Confidence 346666544 4777888754
No 396
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.52 E-value=31 Score=31.27 Aligned_cols=109 Identities=10% Similarity=0.149 Sum_probs=68.1
Q ss_pred CCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcE
Q 036510 148 HPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKST 227 (288)
Q Consensus 148 ~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~ 227 (288)
..+.|.+|.|+|+. +.++.--.|++|-+.+....+..+...+..+.....|..+.|+.+. -
T Consensus 65 d~G~I~SIkFSlDn--------------kilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~-----e 125 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDN--------------KILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSST-----E 125 (657)
T ss_pred CCCceeEEEeccCc--------------ceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCe-----e
Confidence 34579999999997 6688777888898887643321112222223344458888898752 2
Q ss_pred EEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeC
Q 036510 228 IASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADG 278 (288)
Q Consensus 228 l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~ 278 (288)
+|--+ |.-+-+|.+.... ...+.++.++..|....|.|+.+.++-++.
T Consensus 126 ~A~i~-~~G~e~y~v~pek--rslRlVks~~~nvnWy~yc~et~v~LL~t~ 173 (657)
T KOG2377|consen 126 IAFIT-DQGIEFYQVLPEK--RSLRLVKSHNLNVNWYMYCPETAVILLSTT 173 (657)
T ss_pred EEEEe-cCCeEEEEEchhh--hhhhhhhhcccCccEEEEccccceEeeecc
Confidence 43333 3346677664332 123455666778999999999887655543
No 397
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=83.64 E-value=33 Score=30.87 Aligned_cols=29 Identities=17% Similarity=0.347 Sum_probs=25.3
Q ss_pred ccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510 258 KTPVYRVSWSLTGNILAVADGNNNVTLWE 286 (288)
Q Consensus 258 ~~~i~~~~~spdg~~l~s~~~d~~v~~w~ 286 (288)
.+++..++.||+|+++|.-..+|++.+..
T Consensus 216 ~~~i~~iavSpng~~iAl~t~~g~l~v~s 244 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFTDSGNLWVVS 244 (410)
T ss_pred CCCeEEEEECCCCCEEEEEECCCCEEEEE
Confidence 35899999999999999999999988765
No 398
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=83.14 E-value=38 Score=31.21 Aligned_cols=144 Identities=13% Similarity=0.098 Sum_probs=78.9
Q ss_pred CeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCC
Q 036510 116 GLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNG 195 (288)
Q Consensus 116 ~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 195 (288)
..++..|+.-..++-.|+..+.....+.. |.. + -+.|.|... ...+.+.+.|+-- .+..|.-.|.+-.
T Consensus 480 sli~~dg~~~~kLykmDIErGkvveeW~~---~dd-v-vVqy~p~~k------f~qmt~eqtlvGl-S~~svFrIDPR~~ 547 (776)
T COG5167 480 SLIYLDGGERDKLYKMDIERGKVVEEWDL---KDD-V-VVQYNPYFK------FQQMTDEQTLVGL-SDYSVFRIDPRAR 547 (776)
T ss_pred ceEEecCCCcccceeeecccceeeeEeec---CCc-c-eeecCCchh------HHhcCccceEEee-cccceEEeccccc
Confidence 44566666666777777766543222221 221 2 345555431 1223334455533 3555544555432
Q ss_pred ceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEE
Q 036510 196 IWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAV 275 (288)
Q Consensus 196 ~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s 275 (288)
..++.. ...++++..-.||.-.-....+||.||.-|-||+||--. ...++.+-.++..|.-+.-+.+|+.+++
T Consensus 548 gNKi~v----~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig---~rAKtalP~lG~aIk~idvta~Gk~ila 620 (776)
T COG5167 548 GNKIKV----VESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIG---KRAKTALPGLGDAIKHIDVTANGKHILA 620 (776)
T ss_pred CCceee----eeehhccccccccccccccCceEEEecCCCceeeehhhc---chhhhcCcccccceeeeEeecCCcEEEE
Confidence 222221 223444555566653222246899999999999998432 1122334456677888999999999877
Q ss_pred EeC
Q 036510 276 ADG 278 (288)
Q Consensus 276 ~~~ 278 (288)
.+.
T Consensus 621 TCk 623 (776)
T COG5167 621 TCK 623 (776)
T ss_pred eec
Confidence 664
No 399
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=82.94 E-value=42 Score=31.50 Aligned_cols=178 Identities=13% Similarity=0.185 Sum_probs=89.0
Q ss_pred cCeEEEEecCCCCCCEEE-Eee--CCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCe--EEEEEeCCCcEEE
Q 036510 56 GAVWEVAWAHPKFGSILA-SCS--FDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGL--CLACGSSDGNISV 130 (288)
Q Consensus 56 ~~v~~~~~~~~~~~~~l~-s~s--~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~--~l~sg~~d~~i~i 130 (288)
.++.+++|. ||+.++ +.= .+|.++.=|. . ....| ..|..+.|.|-.... .+++.-..+.|.+
T Consensus 20 HPvhGlaWT---DGkqVvLT~L~l~~gE~kfGds---~---viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtV 86 (671)
T PF15390_consen 20 HPVHGLAWT---DGKQVVLTDLQLHNGEPKFGDS---K---VIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTV 86 (671)
T ss_pred ccccceEec---CCCEEEEEeeeeeCCccccCCc---c---Eeecc----ceeeeeeecCcccCCCCceEEEeccceEEE
Confidence 478899995 355444 321 2344333211 1 11122 358999999863211 2444556789999
Q ss_pred EeecCC----CCee-eEE--eeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeee
Q 036510 131 FTARAD----GGWD-TSR--IDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFP 203 (288)
Q Consensus 131 ~d~~~~----~~~~-~~~--~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 203 (288)
|.+... +.+. ... +.+..+.----+.|.|... .|+.=.....-.+.++..... ....
T Consensus 87 WqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~--------------iL~VLT~~dvSV~~sV~~d~s--rVka 150 (671)
T PF15390_consen 87 WQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKA--------------ILTVLTARDVSVLPSVHCDSS--RVKA 150 (671)
T ss_pred EEeccCccccccceeeeeeeccCCcccCCCcccccCCCc--------------eEEEEecCceeEeeeeeeCCc--eEEE
Confidence 998632 1111 111 1112222223467888753 122111122222344432211 1111
Q ss_pred ccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCC-CcccceEeeccccCeEEEEe
Q 036510 204 ALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREG-DQWEGKVLHDFKTPVYRVSW 266 (288)
Q Consensus 204 ~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~-~~~~~~~~~~~~~~i~~~~~ 266 (288)
.++ ..+.|.|.+|-+|+ .+++|+.+.--.-.|||-..+. ..+...++++.++.|.++.-
T Consensus 151 Di~-~~G~IhCACWT~DG---~RLVVAvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~A 210 (671)
T PF15390_consen 151 DIK-TSGLIHCACWTKDG---QRLVVAVGSSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIEA 210 (671)
T ss_pred ecc-CCceEEEEEecCcC---CEEEEEeCCeEEEEEecCchhhhhhCCcceeecCCCceEEEEE
Confidence 222 34458999999985 4566666776678899865431 12333455666666655543
No 400
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=82.14 E-value=39 Score=31.64 Aligned_cols=121 Identities=11% Similarity=0.131 Sum_probs=66.8
Q ss_pred ccccceEEEEEcCC----CCEEEEeeCCCcEEEEEeCC---CCceeeEEEeccccC-----eEEEEecCCCCCCEEEEee
Q 036510 9 GHEDTVHDVAMDYY----GKRLATASSDYSIKIIGVGN---NTSQHLAKLSGHKGA-----VWEVAWAHPKFGSILASCS 76 (288)
Q Consensus 9 ~h~~~v~~~~~s~~----g~~l~s~~~d~~i~lwd~~~---~~~~~~~~~~~h~~~-----v~~~~~~~~~~~~~l~s~s 76 (288)
|+-..|.+++|.|- -..|++...-+.|.+|-+-. +..+.+.+...+-.. -.++.|. |. ..+|+.-.
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWH-Pk-~~iL~VLT 131 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWH-PK-KAILTVLT 131 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCccccc-CC-CceEEEEe
Confidence 44567899999884 34678888899999998741 222333332222111 1346674 42 34554333
Q ss_pred CCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeec
Q 036510 77 FDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTAR 134 (288)
Q Consensus 77 ~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~ 134 (288)
....-.+++++..+.-.+ ..++ -.+.|.|.+|.+|+ .+++++-+..=+-++||-.
T Consensus 132 ~~dvSV~~sV~~d~srVk-aDi~-~~G~IhCACWT~DG-~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 132 ARDVSVLPSVHCDSSRVK-ADIK-TSGLIHCACWTKDG-QRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred cCceeEeeeeeeCCceEE-Eecc-CCceEEEEEecCcC-CEEEEEeCCeEEEEEecCc
Confidence 322223445543332111 1233 45789999999986 3444433444566788754
No 401
>PRK13684 Ycf48-like protein; Provisional
Probab=81.85 E-value=34 Score=29.77 Aligned_cols=138 Identities=11% Similarity=0.168 Sum_probs=66.5
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCcEEE-EEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCC
Q 036510 11 EDTVHDVAMDYYGKRLATASSDYSIKI-IGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNS 89 (288)
Q Consensus 11 ~~~v~~~~~s~~g~~l~s~~~d~~i~l-wd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~ 89 (288)
...++.+.+.+++.+++.+ ..|.+.. ++-...+...+ ..+-...++++.+.++ +..++. +..|.+.+=....+
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~~gg~tW~~~--~~~~~~~l~~i~~~~~--g~~~~v-g~~G~~~~~s~d~G 245 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWEPGQTAWTPH--QRNSSRRLQSMGFQPD--GNLWML-ARGGQIRFNDPDDL 245 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEEcCCCCCeEEEe--eCCCcccceeeeEcCC--CCEEEE-ecCCEEEEccCCCC
Confidence 4567888888888666544 4454332 12111112222 2233456788888653 555444 55677654223334
Q ss_pred CceEEeEEee-c-CCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCC
Q 036510 90 NEWIKDHVFE-D-HKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAP 159 (288)
Q Consensus 90 ~~~~~~~~~~-~-h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p 159 (288)
..|.... .+ . -...+..+.+.|+ +..+++ +.+|.+. .....+..|........-+.....+.|..
T Consensus 246 ~sW~~~~-~~~~~~~~~l~~v~~~~~--~~~~~~-G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~ 312 (334)
T PRK13684 246 ESWSKPI-IPEITNGYGYLDLAYRTP--GEIWAG-GGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLD 312 (334)
T ss_pred Ccccccc-CCccccccceeeEEEcCC--CCEEEE-cCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeC
Confidence 4443211 11 0 1234677888875 444444 4566553 33333445543221112223455555543
No 402
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=81.61 E-value=26 Score=31.59 Aligned_cols=103 Identities=11% Similarity=0.202 Sum_probs=52.5
Q ss_pred CCCcEEEEEeCCCCceeeEEEec--cccCeEEEEecCCCCCC-EEEEeeCCCcEEEeecCCCCceEEeEEeecC------
Q 036510 31 SDYSIKIIGVGNNTSQHLAKLSG--HKGAVWEVAWAHPKFGS-ILASCSFDGTVIIWKEGNSNEWIKDHVFEDH------ 101 (288)
Q Consensus 31 ~d~~i~lwd~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h------ 101 (288)
+..++.+||+... +.++++.- -....-.|+|.|++... -|+.+.-..+|-.|--....+|...+.+.-.
T Consensus 220 yG~~l~vWD~~~r--~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~ 297 (461)
T PF05694_consen 220 YGHSLHVWDWSTR--KLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEG 297 (461)
T ss_dssp S--EEEEEETTTT--EEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--S
T ss_pred ccCeEEEEECCCC--cEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCc
Confidence 4578999999643 56666542 22345678998865433 4555555555555543234445333222110
Q ss_pred -------------CCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCC
Q 036510 102 -------------KSSVNSIDWAPHELGLCLACGSSDGNISVFTARAD 136 (288)
Q Consensus 102 -------------~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~ 136 (288)
..-|+.+..+.|+ ..+.+++=..|.|+.||+...
T Consensus 298 ~~lp~ml~~~~~~P~LitDI~iSlDD-rfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 298 WILPEMLKPFGAVPPLITDILISLDD-RFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp S---GGGGGG-EE------EEE-TTS--EEEEEETTTTEEEEEE-SST
T ss_pred ccccccccccccCCCceEeEEEccCC-CEEEEEcccCCcEEEEecCCC
Confidence 1236778888874 456667777899999999764
No 403
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=80.89 E-value=37 Score=29.51 Aligned_cols=73 Identities=11% Similarity=0.144 Sum_probs=43.9
Q ss_pred ceEEEEecCCCC---CCCcEEEEEeCCCcEEEEEeecCCCcc-cceEeeccccCeEEEEeecCCCEEEEEeCCCcEE
Q 036510 211 WVRDVAWAPNLG---LPKSTIASASEDGKVIIWTVAREGDQW-EGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVT 283 (288)
Q Consensus 211 ~V~~v~~sp~~~---~~~~~l~s~s~D~~i~iw~~~~~~~~~-~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~ 283 (288)
.+..+.|.+... +.+.+|++.-..+.|....+....... ....+.++...+..+++.|||.+.++-+.+|.|.
T Consensus 254 ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 254 APTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp -EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred ccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 456666664321 245677766666777777765321111 1122334555799999999999999988888873
No 404
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=80.72 E-value=38 Score=29.61 Aligned_cols=224 Identities=14% Similarity=0.089 Sum_probs=101.2
Q ss_pred EEEEcCCCCEEEEeeCC-CcEEEEEeCCCCceeeEEEecccc---CeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCc
Q 036510 16 DVAMDYYGKRLATASSD-YSIKIIGVGNNTSQHLAKLSGHKG---AVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNE 91 (288)
Q Consensus 16 ~~~~s~~g~~l~s~~~d-~~i~lwd~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~ 91 (288)
.+-|||||++||-.-.| ..|+.+.+. ....... .+..+.+..+ |..-.. -.+.|+++..+..
T Consensus 105 ~~~WSpd~~~la~~~~d~~~v~~~~~~--------~~~~~~~~yp~~~~~~YPk~--G~~np~----v~l~v~~~~~~~~ 170 (353)
T PF00930_consen 105 AVWWSPDSKYLAFLRFDEREVPEYPLP--------DYSPPDSQYPEVESIRYPKA--GDPNPR----VSLFVVDLASGKT 170 (353)
T ss_dssp SEEE-TTSSEEEEEEEE-TTS-EEEEE--------EESSSTESS-EEEEEE--BT--TS---E----EEEEEEESSSTCC
T ss_pred ceEECCCCCEEEEEEECCcCCceEEee--------ccCCccccCCcccccccCCC--CCcCCc----eEEEEEECCCCcE
Confidence 46799999998876654 223333221 1111111 3455666433 222111 1455567765542
Q ss_pred eEEeEEe---ecCCCceeEEEeccCCCCeEEEEEeCCC---cEEEEeecCCCCeeeEEeeccCCCC---eeEEEeC-CCC
Q 036510 92 WIKDHVF---EDHKSSVNSIDWAPHELGLCLACGSSDG---NISVFTARADGGWDTSRIDQAHPVG---VTSVSWA-PST 161 (288)
Q Consensus 92 ~~~~~~~---~~h~~~v~~l~~~p~~~~~~l~sg~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~---v~~i~~~-p~~ 161 (288)
. .+... ..-..-+..+.|.+++...++.....++ .+.++|...+.. .... .+..+.- -..+.|. +++
T Consensus 171 ~-~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~-~~~~-~e~~~~Wv~~~~~~~~~~~~~ 247 (353)
T PF00930_consen 171 T-ELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGET-RVVL-EETSDGWVDVYDPPHFLGPDG 247 (353)
T ss_dssp C-EE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTC-EEEE-EEESSSSSSSSSEEEE-TTTS
T ss_pred E-EeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCce-eEEE-EecCCcceeeecccccccCCC
Confidence 1 11111 1223457789999884223344445444 233445544322 1111 1111111 1122222 332
Q ss_pred CCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEE-EEecCCCCCCCcEEEEEeC--CCcEE
Q 036510 162 APGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRD-VAWAPNLGLPKSTIASASE--DGKVI 238 (288)
Q Consensus 162 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~-v~~sp~~~~~~~~l~s~s~--D~~i~ 238 (288)
..++.....||.-.|+-+...... ...+....-.|.. +.|.++. +...-++.. ...-.
T Consensus 248 -------------~~~l~~s~~~G~~hly~~~~~~~~---~~~lT~G~~~V~~i~~~d~~~---~~iyf~a~~~~p~~r~ 308 (353)
T PF00930_consen 248 -------------NEFLWISERDGYRHLYLYDLDGGK---PRQLTSGDWEVTSILGWDEDN---NRIYFTANGDNPGERH 308 (353)
T ss_dssp -------------SEEEEEEETTSSEEEEEEETTSSE---EEESS-SSS-EEEEEEEECTS---SEEEEEESSGGTTSBE
T ss_pred -------------CEEEEEEEcCCCcEEEEEcccccc---eeccccCceeecccceEcCCC---CEEEEEecCCCCCceE
Confidence 245555567887776666543211 2233434445655 5667763 233334544 34677
Q ss_pred EEEeecC-CCcccceEeeccccCeEEEEeecCCCEEEEEe
Q 036510 239 IWTVARE-GDQWEGKVLHDFKTPVYRVSWSLTGNILAVAD 277 (288)
Q Consensus 239 iw~~~~~-~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~ 277 (288)
+|.+... .. ..+.+......-..+.|||||++++...
T Consensus 309 lY~v~~~~~~--~~~~LT~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 309 LYRVSLDSGG--EPKCLTCEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp EEEEETTETT--EEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred EEEEEeCCCC--CeEeccCCCCCceEEEECCCCCEEEEEE
Confidence 7777654 21 1233333222227999999999977654
No 405
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=80.53 E-value=25 Score=27.30 Aligned_cols=31 Identities=19% Similarity=0.307 Sum_probs=25.0
Q ss_pred CeEEEEecCCC----CCCEEEEeeCCCcEEEeecC
Q 036510 57 AVWEVAWAHPK----FGSILASCSFDGTVIIWKEG 87 (288)
Q Consensus 57 ~v~~~~~~~~~----~~~~l~s~s~d~~v~iwd~~ 87 (288)
.+..++|||.. ...+|+....++.+.||...
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 68899999853 24588899999999999754
No 406
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=79.83 E-value=9.7 Score=25.88 Aligned_cols=28 Identities=14% Similarity=0.190 Sum_probs=23.1
Q ss_pred CeEEEEeecCCCEEEEEeC-CCcEEEeEc
Q 036510 260 PVYRVSWSLTGNILAVADG-NNNVTLWEE 287 (288)
Q Consensus 260 ~i~~~~~spdg~~l~s~~~-d~~v~~w~~ 287 (288)
..+.+.++|++++|.+++. .++|++++.
T Consensus 55 ~aNGI~~s~~~k~lyVa~~~~~~I~vy~~ 83 (86)
T PF01731_consen 55 FANGIAISPDKKYLYVASSLAHSIHVYKR 83 (86)
T ss_pred CCceEEEcCCCCEEEEEeccCCeEEEEEe
Confidence 4568999999999888875 688999985
No 407
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=79.72 E-value=17 Score=28.18 Aligned_cols=33 Identities=18% Similarity=0.374 Sum_probs=26.6
Q ss_pred ceEEEEecCCC--CCCCcEEEEEeCCCcEEEEEee
Q 036510 211 WVRDVAWAPNL--GLPKSTIASASEDGKVIIWTVA 243 (288)
Q Consensus 211 ~V~~v~~sp~~--~~~~~~l~s~s~D~~i~iw~~~ 243 (288)
.|.+++|||.+ .....+||.-..++.|.||...
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 68999999964 2235788888999999999765
No 408
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.97 E-value=40 Score=28.73 Aligned_cols=166 Identities=9% Similarity=0.127 Sum_probs=88.3
Q ss_pred ccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEE--eccccCeEEEEecCCCCCCEEEEeeCCCcEEEeec
Q 036510 9 GHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKL--SGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE 86 (288)
Q Consensus 9 ~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~ 86 (288)
|-+..|.++.|+|+.+.|++......--++=.. .+..+.++ .+-. ..-+|.|..+ +.+.++-=.++++.++.+
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~--~GdlirtiPL~g~~-DpE~Ieyig~--n~fvi~dER~~~l~~~~v 157 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTK--EGDLIRTIPLTGFS-DPETIEYIGG--NQFVIVDERDRALYLFTV 157 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEec--CCceEEEecccccC-ChhHeEEecC--CEEEEEehhcceEEEEEE
Confidence 445559999999999888777666554454222 23445443 3322 2345677632 445555456888888876
Q ss_pred CCCCceEEeE--Eee----cC-CCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCC-------CCe
Q 036510 87 GNSNEWIKDH--VFE----DH-KSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHP-------VGV 152 (288)
Q Consensus 87 ~~~~~~~~~~--~~~----~h-~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~-------~~v 152 (288)
...+..+... .++ .+ ....-.++|.|.+ . .+...-.-+-++||.......-........+. ..+
T Consensus 158 d~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~-~-~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~Dv 235 (316)
T COG3204 158 DADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVD-H-RLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDV 235 (316)
T ss_pred cCCccEEeccceEEeccccCCCCcCceeeecCCCC-c-eEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecc
Confidence 5443222111 111 22 3346689999974 3 34445556677887765322111111111111 123
Q ss_pred eEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeC
Q 036510 153 TSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYN 194 (288)
Q Consensus 153 ~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 194 (288)
..+.|++.. +++|+-+.+++.+.-.|...
T Consensus 236 Sgl~~~~~~-------------~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 236 SGLEFNAIT-------------NSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred ccceecCCC-------------CcEEEEecCCceEEEEecCC
Confidence 344455433 36777777777776666544
No 409
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=78.76 E-value=15 Score=37.33 Aligned_cols=110 Identities=12% Similarity=0.139 Sum_probs=60.1
Q ss_pred cccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCC----CCCCcEEEEEeCCCcEEEEEeecC
Q 036510 170 GFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNL----GLPKSTIASASEDGKVIIWTVARE 245 (288)
Q Consensus 170 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~----~~~~~~l~s~s~D~~i~iw~~~~~ 245 (288)
|.+...++..- +.|+.+.||+..++. ..+.+.+-...|..|..-.-+ ...=++++.-+.-..|.++-+...
T Consensus 85 GiFpeI~RaWi-TiDn~L~lWny~~~~----e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~ 159 (1311)
T KOG1900|consen 85 GIFPEIGRAWI-TIDNNLFLWNYESDN----ELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFD 159 (1311)
T ss_pred ccchhhcceEE-EeCCeEEEEEcCCCC----ccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEec
Confidence 44444455443 358999999998742 233445555556666432211 000133444444456778776643
Q ss_pred CCcccceEeec------cccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510 246 GDQWEGKVLHD------FKTPVYRVSWSLTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 246 ~~~~~~~~~~~------~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~ 287 (288)
........+.. -+..|+++....+|+.|.+| .|| +||.+
T Consensus 160 ~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G-~dg--~lyEl 204 (1311)
T KOG1900|consen 160 EFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAG-RDG--NLYEL 204 (1311)
T ss_pred cccCcccccccceeeecCCceEEEEEeccCCcEEEee-cCC--CEEEE
Confidence 22211122111 13468889989999999977 555 67763
No 410
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=78.38 E-value=11 Score=35.27 Aligned_cols=29 Identities=10% Similarity=0.206 Sum_probs=21.9
Q ss_pred CeEEEEeec----CCCEEEEEeCCCcEEEeEcC
Q 036510 260 PVYRVSWSL----TGNILAVADGNNNVTLWEEA 288 (288)
Q Consensus 260 ~i~~~~~sp----dg~~l~s~~~d~~v~~w~~~ 288 (288)
...+++.++ +..++++.+.|+++|+|++.
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~ 248 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLE 248 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETT
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECC
Confidence 456677777 77899999999999999953
No 411
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.11 E-value=42 Score=28.58 Aligned_cols=198 Identities=12% Similarity=0.129 Sum_probs=106.5
Q ss_pred eccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEee--cCCCceeEEEeccCCCCeEEEEEeCCCcEE
Q 036510 52 SGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFE--DHKSSVNSIDWAPHELGLCLACGSSDGNIS 129 (288)
Q Consensus 52 ~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~--~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~ 129 (288)
.|-+..+.++.|+++ .+.|.+..+.....+| +...+. ..++++ +. ..--++.+-.+ +.++++-..++.+.
T Consensus 82 ~g~~~nvS~LTynp~--~rtLFav~n~p~~iVE-lt~~Gd--lirtiPL~g~-~DpE~Ieyig~--n~fvi~dER~~~l~ 153 (316)
T COG3204 82 LGETANVSSLTYNPD--TRTLFAVTNKPAAIVE-LTKEGD--LIRTIPLTGF-SDPETIEYIGG--NQFVIVDERDRALY 153 (316)
T ss_pred ccccccccceeeCCC--cceEEEecCCCceEEE-EecCCc--eEEEeccccc-CChhHeEEecC--CEEEEEehhcceEE
Confidence 445566999999875 5677777777777777 433332 233332 22 12345555544 56666667788888
Q ss_pred EEeecCCCCeeeEE----eec--cC-CCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeee
Q 036510 130 VFTARADGGWDTSR----IDQ--AH-PVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCF 202 (288)
Q Consensus 130 i~d~~~~~~~~~~~----~~~--~~-~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 202 (288)
++.+..+....... .++ .+ +.+..-++|+|.. +.|...-+.+-+.|+.+..+...+..
T Consensus 154 ~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~--------------~~l~~aKEr~P~~I~~~~~~~~~l~~- 218 (316)
T COG3204 154 LFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVD--------------HRLFVAKERNPIGIFEVTQSPSSLSV- 218 (316)
T ss_pred EEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCC--------------ceEEEEEccCCcEEEEEecCCccccc-
Confidence 87765443221111 111 12 5567788888876 45555666677777776543211111
Q ss_pred eccccC-------CcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeec---ccc---CeEEEEeecC
Q 036510 203 PALQMH-------TDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHD---FKT---PVYRVSWSLT 269 (288)
Q Consensus 203 ~~~~~h-------~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~---~~~---~i~~~~~spd 269 (288)
+....+ -.-|.++.|++.. ++++|-+-.++.+.-.|..-.. .....+..+ ... .--.++..++
T Consensus 219 ~~~~~~~~~~~~f~~DvSgl~~~~~~---~~LLVLS~ESr~l~Evd~~G~~-~~~lsL~~g~~gL~~dipqaEGiamDd~ 294 (316)
T COG3204 219 HASLDPTADRDLFVLDVSGLEFNAIT---NSLLVLSDESRRLLEVDLSGEV-IELLSLTKGNHGLSSDIPQAEGIAMDDD 294 (316)
T ss_pred ccccCcccccceEeeccccceecCCC---CcEEEEecCCceEEEEecCCCe-eeeEEeccCCCCCcccCCCcceeEECCC
Confidence 111111 1135667787753 4566666667766666654221 111111121 111 1246788888
Q ss_pred CCEEEEE
Q 036510 270 GNILAVA 276 (288)
Q Consensus 270 g~~l~s~ 276 (288)
|.+-+++
T Consensus 295 g~lYIvS 301 (316)
T COG3204 295 GNLYIVS 301 (316)
T ss_pred CCEEEEe
Confidence 8876655
No 412
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=75.78 E-value=75 Score=31.01 Aligned_cols=79 Identities=15% Similarity=0.195 Sum_probs=52.6
Q ss_pred cceEEEEEcCCCCEEEEeeCCCcEEEEEeCCC----------Cc-eeeEEE--------eccccCeEEEEecCCC-CCCE
Q 036510 12 DTVHDVAMDYYGKRLATASSDYSIKIIGVGNN----------TS-QHLAKL--------SGHKGAVWEVAWAHPK-FGSI 71 (288)
Q Consensus 12 ~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~----------~~-~~~~~~--------~~h~~~v~~~~~~~~~-~~~~ 71 (288)
-.|..|.++++|++|+-.|..+ |.|-.+... .. ..++++ ..+...|..+.|.|.. .+..
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 4788899999999988887754 444444211 00 111221 2455678999996532 3578
Q ss_pred EEEeeCCCcEEEeecCCCCc
Q 036510 72 LASCSFDGTVIIWKEGNSNE 91 (288)
Q Consensus 72 l~s~s~d~~v~iwd~~~~~~ 91 (288)
|+.=..|+++|+||+.....
T Consensus 164 l~vLtsdn~lR~y~~~~~~~ 183 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDPQH 183 (717)
T ss_pred EEEEecCCEEEEEecCCCCC
Confidence 88888999999999976543
No 413
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=75.61 E-value=51 Score=28.21 Aligned_cols=139 Identities=6% Similarity=-0.080 Sum_probs=74.2
Q ss_pred cCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecC
Q 036510 56 GAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARA 135 (288)
Q Consensus 56 ~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~ 135 (288)
+.+..+.++ +++..-+..+.-++|.|+.+.....+...+.. .+--.++.++ ++++....+|.-+-++|+..
T Consensus 87 ~l~~Dv~vs----e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt-~gyaygv~vs----Gn~aYVadlddgfLivdvsd 157 (370)
T COG5276 87 DLFADVRVS----EEYVYVADWSSGLRIVDISTPDSPTLIGFLNT-DGYAYGVYVS----GNYAYVADLDDGFLIVDVSD 157 (370)
T ss_pred hhhheeEec----ccEEEEEcCCCceEEEeccCCCCcceeccccC-CceEEEEEec----CCEEEEeeccCcEEEEECCC
Confidence 345667775 56777777888999999987654333222221 1234455554 45666677677777888876
Q ss_pred CCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEE
Q 036510 136 DGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDV 215 (288)
Q Consensus 136 ~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v 215 (288)
...-...............+..| +++-..+-.|+-+.|.|+.....+ +++.... -...+.++
T Consensus 158 pssP~lagrya~~~~d~~~v~IS----------------Gn~AYvA~~d~GL~ivDVSnp~sP-vli~~~n-~g~g~~sv 219 (370)
T COG5276 158 PSSPQLAGRYALPGGDTHDVAIS----------------GNYAYVAWRDGGLTIVDVSNPHSP-VLIGSYN-TGPGTYSV 219 (370)
T ss_pred CCCceeeeeeccCCCCceeEEEe----------------cCeEEEEEeCCCeEEEEccCCCCC-eEEEEEe-cCCceEEE
Confidence 54322222221111111222222 133444557888999999764211 2221111 11247777
Q ss_pred EecCCC
Q 036510 216 AWAPNL 221 (288)
Q Consensus 216 ~~sp~~ 221 (288)
.-+++.
T Consensus 220 ~vsdnr 225 (370)
T COG5276 220 SVSDNR 225 (370)
T ss_pred EecCCe
Confidence 777763
No 414
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=73.75 E-value=37 Score=31.36 Aligned_cols=34 Identities=18% Similarity=0.414 Sum_probs=27.3
Q ss_pred ceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecC
Q 036510 211 WVRDVAWAPNLGLPKSTIASASEDGKVIIWTVARE 245 (288)
Q Consensus 211 ~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~ 245 (288)
.+.-++|+|++.. +..|+.-+.|+.||+||+++.
T Consensus 167 tl~Qa~WHP~S~~-D~hL~iL~sdnviRiy~lS~~ 200 (741)
T KOG4460|consen 167 TLKQAAWHPSSIL-DPHLVLLTSDNVIRIYSLSEP 200 (741)
T ss_pred eeeeccccCCccC-CceEEEEecCcEEEEEecCCc
Confidence 3677899998644 457888899999999999864
No 415
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=73.31 E-value=10 Score=36.71 Aligned_cols=65 Identities=22% Similarity=0.221 Sum_probs=44.3
Q ss_pred CCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCC
Q 036510 208 HTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGN 279 (288)
Q Consensus 208 h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d 279 (288)
...+|++..|..| ++-|+.||.|.++..+.....+..+...++.-.|+.+.+.-.|=+++-+++|
T Consensus 625 g~lPvrsla~~ed-------~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~ 689 (925)
T KOG3522|consen 625 GSLPVRSLAFQED-------FVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGD 689 (925)
T ss_pred CCccccchhhhhc-------eeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcCCC
Confidence 3456888887765 6789999999999887643333333333444568888888777776666554
No 416
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=72.07 E-value=58 Score=27.33 Aligned_cols=97 Identities=12% Similarity=0.107 Sum_probs=57.9
Q ss_pred ceeEEeecCCcEEEEEEeCCceeeeeeec-cccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEe
Q 036510 176 QKLCSGGCDNTVKVWKLYNGIWKMDCFPA-LQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVL 254 (288)
Q Consensus 176 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~ 254 (288)
.+++-||..+.++-.|..+|. ++.. .-+ .++.+-+.-- +.++|-|...+.+.+-+.+...+.+.....
T Consensus 24 T~v~igSHs~~~~avd~~sG~----~~We~ilg--~RiE~sa~vv-----gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~ 92 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGN----LIWEAILG--VRIECSAIVV-----GDFVVLGCYSGGLYFLCVKTGSQIWNFVIL 92 (354)
T ss_pred eEEEEecCCceEEEecCCCCc----EEeehhhC--ceeeeeeEEE-----CCEEEEEEccCcEEEEEecchhheeeeeeh
Confidence 456677777777777776652 1111 011 1122211111 357999999999999887754322221111
Q ss_pred eccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510 255 HDFKTPVYRVSWSLTGNILAVADGNNNVTLWE 286 (288)
Q Consensus 255 ~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~ 286 (288)
+..=.+....+++..+..|++|++.+..|
T Consensus 93 ---~~vk~~a~~d~~~glIycgshd~~~yalD 121 (354)
T KOG4649|consen 93 ---ETVKVRAQCDFDGGLIYCGSHDGNFYALD 121 (354)
T ss_pred ---hhhccceEEcCCCceEEEecCCCcEEEec
Confidence 11123567778999999999999988776
No 417
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=72.04 E-value=66 Score=27.94 Aligned_cols=111 Identities=11% Similarity=0.152 Sum_probs=52.7
Q ss_pred eeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCce--eeeeeecc-ccCCcceEEEEecCCCCCCCcEE
Q 036510 152 VTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIW--KMDCFPAL-QMHTDWVRDVAWAPNLGLPKSTI 228 (288)
Q Consensus 152 v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~~~-~~h~~~V~~v~~sp~~~~~~~~l 228 (288)
-++|+|.|++ +++++ ...+.|.+++ ..+.. ....+..+ .........++++|+....+...
T Consensus 4 P~~~a~~pdG--------------~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lY 67 (331)
T PF07995_consen 4 PRSMAFLPDG--------------RLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLY 67 (331)
T ss_dssp EEEEEEETTS--------------CEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEE
T ss_pred ceEEEEeCCC--------------cEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEE
Confidence 4578888875 55554 5588898888 34322 11111111 22334578999999643323444
Q ss_pred EEEeCC------C--cEEEEEeecCCCc-c-cceEeec-----c-ccCeEEEEeecCCCEEEEEeC
Q 036510 229 ASASED------G--KVIIWTVAREGDQ-W-EGKVLHD-----F-KTPVYRVSWSLTGNILAVADG 278 (288)
Q Consensus 229 ~s~s~D------~--~i~iw~~~~~~~~-~-~~~~~~~-----~-~~~i~~~~~spdg~~l~s~~~ 278 (288)
++.+.. . .|.-|........ . ...++.. . .-....+.|.|||.+.++.+.
T Consensus 68 v~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~ 133 (331)
T PF07995_consen 68 VYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD 133 (331)
T ss_dssp EEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred EEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence 444422 2 3333444322100 0 1111111 0 113467999999976555543
No 418
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=71.02 E-value=19 Score=29.30 Aligned_cols=61 Identities=11% Similarity=0.219 Sum_probs=42.1
Q ss_pred CcEEEEEeCCCcEEEEEeecCCCcccc----eEee-------ccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510 225 KSTIASASEDGKVIIWTVAREGDQWEG----KVLH-------DFKTPVYRVSWSLTGNILAVADGNNNVTLWE 286 (288)
Q Consensus 225 ~~~l~s~s~D~~i~iw~~~~~~~~~~~----~~~~-------~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~ 286 (288)
+.+|++-..+|.+++||+...+-.... .++. .....|..+..+.+|.-+++- ++|....|+
T Consensus 22 ~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l-sng~~y~y~ 93 (219)
T PF07569_consen 22 GSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL-SNGDSYSYS 93 (219)
T ss_pred CCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE-eCCCEEEec
Confidence 367999999999999999865311111 0111 233568899999999887766 457788887
No 419
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=70.81 E-value=26 Score=30.53 Aligned_cols=58 Identities=14% Similarity=0.143 Sum_probs=35.4
Q ss_pred CCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCC
Q 036510 32 DYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSN 90 (288)
Q Consensus 32 d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~ 90 (288)
|+.-.||-++..+.+++..+.. ...+.+|..+.+....+++....++.+.+||..+++
T Consensus 266 dpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk 323 (342)
T PF06433_consen 266 DPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGK 323 (342)
T ss_dssp S-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--
T ss_pred CCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCc
Confidence 3334555554455677877763 235778888876433333444568999999998875
No 420
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=70.35 E-value=76 Score=27.96 Aligned_cols=18 Identities=17% Similarity=0.189 Sum_probs=14.0
Q ss_pred CeEEEEeecCCCEEEEEe
Q 036510 260 PVYRVSWSLTGNILAVAD 277 (288)
Q Consensus 260 ~i~~~~~spdg~~l~s~~ 277 (288)
....++|+|+|+++++-.
T Consensus 185 np~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 185 NPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CCccceECCCCCEEEEcc
Confidence 356899999999987543
No 421
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=70.04 E-value=38 Score=27.55 Aligned_cols=63 Identities=14% Similarity=0.325 Sum_probs=39.8
Q ss_pred CCEEEEeeCCCcEEEeecCCCCceEEeE----Eee-------cCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeec
Q 036510 69 GSILASCSFDGTVIIWKEGNSNEWIKDH----VFE-------DHKSSVNSIDWAPHELGLCLACGSSDGNISVFTAR 134 (288)
Q Consensus 69 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~----~~~-------~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~ 134 (288)
+.+|+....+|.+++||+.+.+...... .+. .....|..+.+..+ |.-+++-+ +|..+.|+..
T Consensus 22 ~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~--G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 22 GSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSN--GVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred CCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCC--CCEEEEEe-CCCEEEeccc
Confidence 6789999999999999997754321110 011 23456777777754 44455444 3667777764
No 422
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=66.36 E-value=90 Score=27.28 Aligned_cols=104 Identities=13% Similarity=0.200 Sum_probs=54.8
Q ss_pred cCCCCEEEEee---------CCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCC
Q 036510 20 DYYGKRLATAS---------SDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSN 90 (288)
Q Consensus 20 s~~g~~l~s~~---------~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~ 90 (288)
|||+++++-.. ..+.+.++|+.... +..+......+....|+|+ |+.++-.. ++.+.+.+...+.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~---~~~l~~~~~~~~~~~~sP~--g~~~~~v~-~~nly~~~~~~~~ 74 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGE---ITPLTPPPPKLQDAKWSPD--GKYIAFVR-DNNLYLRDLATGQ 74 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTE---EEESS-EETTBSEEEE-SS--STEEEEEE-TTEEEEESSTTSE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCc---eEECcCCccccccceeecC--CCeeEEEe-cCceEEEECCCCC
Confidence 57777766522 23567888886532 2233323566778899875 78888775 4788888765442
Q ss_pred ceEEeEEeec---------------C-CCceeEEEeccCCCCeEEEEE-eCCCcEEEEee
Q 036510 91 EWIKDHVFED---------------H-KSSVNSIDWAPHELGLCLACG-SSDGNISVFTA 133 (288)
Q Consensus 91 ~~~~~~~~~~---------------h-~~~v~~l~~~p~~~~~~l~sg-~~d~~i~i~d~ 133 (288)
. ...+..+ . -+.-..+-|+||. ..+|.. -.+..+..+.+
T Consensus 75 ~--~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~--~~la~~~~d~~~v~~~~~ 130 (353)
T PF00930_consen 75 E--TQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDS--KYLAFLRFDEREVPEYPL 130 (353)
T ss_dssp E--EESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTS--SEEEEEEEE-TTS-EEEE
T ss_pred e--EEeccccceeEEcCccceeccccccccccceEECCCC--CEEEEEEECCcCCceEEe
Confidence 1 1111111 0 1233567899984 444444 44455555543
No 423
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=66.30 E-value=82 Score=28.04 Aligned_cols=70 Identities=10% Similarity=0.046 Sum_probs=33.7
Q ss_pred EEcCCCCE-EEEeeCCCcEEEEEeCCCCceeeEEEeccccC-eEEEEecCCCCCCEEEEeeCCCcEEEeecCCCC
Q 036510 18 AMDYYGKR-LATASSDYSIKIIGVGNNTSQHLAKLSGHKGA-VWEVAWAHPKFGSILASCSFDGTVIIWKEGNSN 90 (288)
Q Consensus 18 ~~s~~g~~-l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~-v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~ 90 (288)
+|.+||++ |.++..|+.-.+|-++-.+++ +.+|..+.+. ......+++ .+.++-...+..++--|+.+.+
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~-i~QLTdg~g~~~~g~~~s~~--~~~~~Yv~~~~~l~~vdL~T~e 113 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGE-ITQLTDGPGDNTFGGFLSPD--DRALYYVKNGRSLRRVDLDTLE 113 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-E-EEE---SS-B-TTT-EE-TT--SSEEEEEETTTEEEEEETTT--
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCE-EEECccCCCCCccceEEecC--CCeEEEEECCCeEEEEECCcCc
Confidence 57888855 666667888777766544433 4455543321 223344443 4565555566777777887654
No 424
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=65.74 E-value=17 Score=18.62 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=18.1
Q ss_pred eEEEEeecCCCEEEEEeCCCcEEEe
Q 036510 261 VYRVSWSLTGNILAVADGNNNVTLW 285 (288)
Q Consensus 261 i~~~~~spdg~~l~s~~~d~~v~~w 285 (288)
...++.+++|+.+++=..+..|+++
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEEC
Confidence 4567888888887776667777654
No 425
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=64.30 E-value=37 Score=31.30 Aligned_cols=98 Identities=15% Similarity=0.233 Sum_probs=58.5
Q ss_pred EEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCC----CCcEEEEEeCCCcEEEEEeecCCCcccceEe
Q 036510 179 CSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGL----PKSTIASASEDGKVIIWTVAREGDQWEGKVL 254 (288)
Q Consensus 179 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~----~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~ 254 (288)
..|+....+.-.|++.| +.+.....|.+- -|.|.|+.+. +.+.|+ |-+|..|.--|++..+.. ..+
T Consensus 484 ~dg~~~~kLykmDIErG----kvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNK---i~v 553 (776)
T COG5167 484 LDGGERDKLYKMDIERG----KVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNK---IKV 553 (776)
T ss_pred ecCCCcccceeeecccc----eeeeEeecCCcc--eeecCCchhHHhcCccceEE-eecccceEEecccccCCc---eee
Confidence 35565666666677666 556677777763 6899997531 234554 445555555566654321 112
Q ss_pred eccccCeEEEEeecC----CCEEEEEeCCCcEEEeE
Q 036510 255 HDFKTPVYRVSWSLT----GNILAVADGNNNVTLWE 286 (288)
Q Consensus 255 ~~~~~~i~~~~~spd----g~~l~s~~~d~~v~~w~ 286 (288)
-+.+...+--.||.- .-++|+||..|-|||||
T Consensus 554 ~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyD 589 (776)
T COG5167 554 VESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYD 589 (776)
T ss_pred eeehhccccccccccccccCceEEEecCCCceeeeh
Confidence 222333444555543 35889999999999998
No 426
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=63.32 E-value=1.1e+02 Score=27.18 Aligned_cols=199 Identities=15% Similarity=0.121 Sum_probs=101.8
Q ss_pred EEEEEcCCCC-EEEEeeCCCcEEEEEeCCCCceeeEEEe-ccccCeEEEEecCCCCCCEEEEee--CCCcEEEeecCCCC
Q 036510 15 HDVAMDYYGK-RLATASSDYSIKIIGVGNNTSQHLAKLS-GHKGAVWEVAWAHPKFGSILASCS--FDGTVIIWKEGNSN 90 (288)
Q Consensus 15 ~~~~~s~~g~-~l~s~~~d~~i~lwd~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s--~d~~v~iwd~~~~~ 90 (288)
..+.+++.++ ..+....++.|.+.|.... ..+.... +. .-..++++++ .+...++-. .++++.+.|..+..
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~--~~~~~~~vG~--~P~~~~~~~~-~~~vYV~n~~~~~~~vsvid~~t~~ 151 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATN--TVLGSIPVGL--GPVGLAVDPD-GKYVYVANAGNGNNTVSVIDAATNK 151 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCccc--ceeeEeeecc--CCceEEECCC-CCEEEEEecccCCceEEEEeCCCCe
Confidence 3567788886 4555555688888885332 2222221 22 3456888765 234444444 36888887765443
Q ss_pred ceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEe--eccCCCCeeEEEeCCCCCCCceec
Q 036510 91 EWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRI--DQAHPVGVTSVSWAPSTAPGALVG 168 (288)
Q Consensus 91 ~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~--~~~~~~~v~~i~~~p~~~~~~~~~ 168 (288)
.....+.-..+ ..+++.|++ ..++++-..++.|.+.|......+. ... ...-...-..+.++|++.
T Consensus 152 ---~~~~~~vG~~P-~~~a~~p~g-~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~------ 219 (381)
T COG3391 152 ---VTATIPVGNTP-TGVAVDPDG-NKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGN------ 219 (381)
T ss_pred ---EEEEEecCCCc-ceEEECCCC-CeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCC------
Confidence 22223322234 788899985 3345555678999999865432211 000 000111234566677662
Q ss_pred ccccCCCceeEEee--cCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEE-eCCCcEEEEEeec
Q 036510 169 SGFLDPVQKLCSGG--CDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASA-SEDGKVIIWTVAR 244 (288)
Q Consensus 169 ~~~~~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~-s~D~~i~iw~~~~ 244 (288)
...++-. .++++...|..++..... ...... . .-..+...|++ ..+-.. +..+.+.+-|...
T Consensus 220 -------~~yV~~~~~~~~~v~~id~~~~~v~~~-~~~~~~-~-~~~~v~~~p~g----~~~yv~~~~~~~V~vid~~~ 284 (381)
T COG3391 220 -------RVYVANDGSGSNNVLKIDTATGNVTAT-DLPVGS-G-APRGVAVDPAG----KAAYVANSQGGTVSVIDGAT 284 (381)
T ss_pred -------EEEEEeccCCCceEEEEeCCCceEEEe-cccccc-C-CCCceeECCCC----CEEEEEecCCCeEEEEeCCC
Confidence 1222222 235777777766521100 001111 1 23456778874 334334 3346777776543
No 427
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=62.40 E-value=1.8e+02 Score=29.32 Aligned_cols=110 Identities=15% Similarity=0.190 Sum_probs=65.5
Q ss_pred EEEEEcCC-CCEEEEee----------CCCcEEEEEeCCCCceeeEEEecc--ccCeEEEEecCCCCCCEEEEeeCCCcE
Q 036510 15 HDVAMDYY-GKRLATAS----------SDYSIKIIGVGNNTSQHLAKLSGH--KGAVWEVAWAHPKFGSILASCSFDGTV 81 (288)
Q Consensus 15 ~~~~~s~~-g~~l~s~~----------~d~~i~lwd~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~~l~s~s~d~~v 81 (288)
.+.+|..| +++++.|- ..|.|.++.... ...+.....| ++.++++.-. .|+++| +.+.+|
T Consensus 778 ~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e--~~~L~~v~e~~v~Gav~aL~~f---ngkllA--~In~~v 850 (1096)
T KOG1897|consen 778 ISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEE--LNSLELVAETVVKGAVYALVEF---NGKLLA--GINQSV 850 (1096)
T ss_pred eeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEec--CCceeeeeeeeeccceeehhhh---CCeEEE--ecCcEE
Confidence 34457666 67776653 124455555433 1112222222 3556666643 256665 667899
Q ss_pred EEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCC
Q 036510 82 IIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARAD 136 (288)
Q Consensus 82 ~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~ 136 (288)
++++.....+ .+.-..|..++..+..... +..++.|..-+.+.+...+..
T Consensus 851 rLye~t~~~e---Lr~e~~~~~~~~aL~l~v~--gdeI~VgDlm~Sitll~y~~~ 900 (1096)
T KOG1897|consen 851 RLYEWTTERE---LRIECNISNPIIALDLQVK--GDEIAVGDLMRSITLLQYKGD 900 (1096)
T ss_pred EEEEccccce---ehhhhcccCCeEEEEEEec--CcEEEEeeccceEEEEEEecc
Confidence 9999876532 2333457778888887765 556888988888888766543
No 428
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=61.95 E-value=1e+02 Score=26.26 Aligned_cols=75 Identities=13% Similarity=0.156 Sum_probs=41.7
Q ss_pred cccceEEEEEcCCCCEEEEee------CCCcEEEEEeCCCCceeeEE-E-eccccCeEEEEecCCCCCCEEEEee-CCCc
Q 036510 10 HEDTVHDVAMDYYGKRLATAS------SDYSIKIIGVGNNTSQHLAK-L-SGHKGAVWEVAWAHPKFGSILASCS-FDGT 80 (288)
Q Consensus 10 h~~~v~~~~~s~~g~~l~s~~------~d~~i~lwd~~~~~~~~~~~-~-~~h~~~v~~~~~~~~~~~~~l~s~s-~d~~ 80 (288)
-++.|+++.|..+.+.+++|. ....+..||........+.. . ..-.++|..+.+......++.+.|. .++.
T Consensus 35 i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~ 114 (281)
T PF12768_consen 35 ISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANGS 114 (281)
T ss_pred ceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEEEeeccCCceEEEeceecCCC
Confidence 468899999986666666665 34567778876544322221 1 1123667777765432334554443 3333
Q ss_pred --EEEe
Q 036510 81 --VIIW 84 (288)
Q Consensus 81 --v~iw 84 (288)
+.-|
T Consensus 115 ~~l~~~ 120 (281)
T PF12768_consen 115 TFLMKY 120 (281)
T ss_pred ceEEEE
Confidence 4444
No 429
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=61.37 E-value=1.3e+02 Score=27.27 Aligned_cols=38 Identities=16% Similarity=0.139 Sum_probs=27.6
Q ss_pred EeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCC
Q 036510 51 LSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSN 90 (288)
Q Consensus 51 ~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~ 90 (288)
+....-.+..|+-+|. +.+.+....=|.|.++|+..+.
T Consensus 303 l~D~~R~~~~i~~sP~--~~laA~tDslGRV~LiD~~~~~ 340 (415)
T PF14655_consen 303 LPDSKREGESICLSPS--GRLAAVTDSLGRVLLIDVARGI 340 (415)
T ss_pred eccCCceEEEEEECCC--CCEEEEEcCCCcEEEEECCCCh
Confidence 4444445677887654 7888888888999999987643
No 430
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=61.34 E-value=1.3e+02 Score=27.29 Aligned_cols=156 Identities=12% Similarity=0.155 Sum_probs=77.7
Q ss_pred CCCEEEEeeCCCcEEEeecCCCCceEEeEEe-ecCCCceeEEEec---cCCCCeEEEEEeCCCcEEEEeecCCC-C----
Q 036510 68 FGSILASCSFDGTVIIWKEGNSNEWIKDHVF-EDHKSSVNSIDWA---PHELGLCLACGSSDGNISVFTARADG-G---- 138 (288)
Q Consensus 68 ~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~-~~h~~~v~~l~~~---p~~~~~~l~sg~~d~~i~i~d~~~~~-~---- 138 (288)
....++.||..|.++|+++.....-.....+ ..-..+|..+..- +......||.= .-+++.+|.+.... .
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVL-hP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVL-HPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEe-cCCEEEEEEEEecCCCcccC
Confidence 3578999999999999998543211000111 1234677777643 22222334443 34677888774321 1
Q ss_pred -eeeEEeeccCCC--CeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEE
Q 036510 139 -WDTSRIDQAHPV--GVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDV 215 (288)
Q Consensus 139 -~~~~~~~~~~~~--~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v 215 (288)
.......-.|.- ...++..-|.+. .....++|.-+-||++.+++-+.-.+... +.. --..+ .+
T Consensus 115 ~~~~L~~~yeh~l~~~a~nm~~G~Fgg---------~~~~~~IcVQS~DG~L~~feqe~~~f~~~-lp~-~llPg---Pl 180 (418)
T PF14727_consen 115 NQYQLELIYEHSLQRTAYNMCCGPFGG---------VKGRDFICVQSMDGSLSFFEQESFAFSRF-LPD-FLLPG---PL 180 (418)
T ss_pred cEEEEEEEEEEecccceeEEEEEECCC---------CCCceEEEEEecCceEEEEeCCcEEEEEE-cCC-CCCCc---Ce
Confidence 111122222322 122222222221 11136799999999999998543211111 111 11222 23
Q ss_pred EecCCCCCCCcEEEEEeCCCcEEEEEe
Q 036510 216 AWAPNLGLPKSTIASASEDGKVIIWTV 242 (288)
Q Consensus 216 ~~sp~~~~~~~~l~s~s~D~~i~iw~~ 242 (288)
.|+|.. ..|++++.+..+.-|+.
T Consensus 181 ~Y~~~t----Dsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 181 CYCPRT----DSFVTASSSWTLECYKY 203 (418)
T ss_pred EEeecC----CEEEEecCceeEEEecH
Confidence 555542 35677777666666654
No 431
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=60.93 E-value=1e+02 Score=26.14 Aligned_cols=120 Identities=12% Similarity=0.198 Sum_probs=63.2
Q ss_pred CcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEee------CCCcEEEeecCCCCceEEeEE-e-ecCCCc
Q 036510 33 YSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCS------FDGTVIIWKEGNSNEWIKDHV-F-EDHKSS 104 (288)
Q Consensus 33 ~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s------~d~~v~iwd~~~~~~~~~~~~-~-~~h~~~ 104 (288)
..+++||.+......+ -.+-.+.|.++.|.. +.++++.|. ....+..||..+. +|..... . ..-.++
T Consensus 16 ~~lC~yd~~~~qW~~~--g~~i~G~V~~l~~~~--~~~Llv~G~ft~~~~~~~~la~yd~~~~-~w~~~~~~~s~~ipgp 90 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSP--GNGISGTVTDLQWAS--NNQLLVGGNFTLNGTNSSNLATYDFKNQ-TWSSLGGGSSNSIPGP 90 (281)
T ss_pred CEEEEEECCCCEeecC--CCCceEEEEEEEEec--CCEEEEEEeeEECCCCceeEEEEecCCC-eeeecCCcccccCCCc
Confidence 4588999765432222 223467899999973 256666664 4667788888654 3422211 1 112367
Q ss_pred eeEEEeccCCCCeEEEEEe-CCC--cEEEEeecCCCCeeeEEe-eccCCCCeeEEEeCCC
Q 036510 105 VNSIDWAPHELGLCLACGS-SDG--NISVFTARADGGWDTSRI-DQAHPVGVTSVSWAPS 160 (288)
Q Consensus 105 v~~l~~~p~~~~~~l~sg~-~d~--~i~i~d~~~~~~~~~~~~-~~~~~~~v~~i~~~p~ 160 (288)
|..+.+...+.....++|. .++ .|..|| +..|..... .-.-...|..+.+-|-
T Consensus 91 v~a~~~~~~d~~~~~~aG~~~~g~~~l~~~d---Gs~W~~i~~~~~~~~t~I~~l~~~~l 147 (281)
T PF12768_consen 91 VTALTFISNDGSNFWVAGRSANGSTFLMKYD---GSSWSSIGSDILGSGTTIRGLQVLPL 147 (281)
T ss_pred EEEEEeeccCCceEEEeceecCCCceEEEEc---CCceEeccccccCCCCEEEEEEEEec
Confidence 8888775443344555553 344 455554 344543322 1111234666655443
No 432
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=59.99 E-value=1.3e+02 Score=27.13 Aligned_cols=156 Identities=10% Similarity=0.108 Sum_probs=82.8
Q ss_pred CeEEEEEeCCCcEEEEeecCCC-CeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeC
Q 036510 116 GLCLACGSSDGNISVFTARADG-GWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYN 194 (288)
Q Consensus 116 ~~~l~sg~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 194 (288)
...++.|+..|.++||+....+ ..........-..+|..+..-+..... +...||. =.-+.+.+|.+..
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~---------~~~~LaV-LhP~kl~vY~v~~ 106 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGS---------EDLQLAV-LHPRKLSVYSVSL 106 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCC---------CcceEEE-ecCCEEEEEEEEe
Confidence 4578899999999999986433 111122223345567777643321100 0122332 3345566666632
Q ss_pred C--------ceeeeeeeccccCCcceEEEEecCCCCCC-CcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEE
Q 036510 195 G--------IWKMDCFPALQMHTDWVRDVAWAPNLGLP-KSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVS 265 (288)
Q Consensus 195 ~--------~~~~~~~~~~~~h~~~V~~v~~sp~~~~~-~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~ 265 (288)
. ...++.+.+..-+. ...+++.-|-++.. ..+|..-|.||.+.+++-+.. .....+-.+ --.-.+.
T Consensus 107 ~~g~~~~g~~~~L~~~yeh~l~~-~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~---~f~~~lp~~-llPgPl~ 181 (418)
T PF14727_consen 107 VDGTVEHGNQYQLELIYEHSLQR-TAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESF---AFSRFLPDF-LLPGPLC 181 (418)
T ss_pred cCCCcccCcEEEEEEEEEEeccc-ceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcE---EEEEEcCCC-CCCcCeE
Confidence 1 12223222221111 12344444433222 467888899999999974321 001111111 1123478
Q ss_pred eecCCCEEEEEeCCCcEEEeE
Q 036510 266 WSLTGNILAVADGNNNVTLWE 286 (288)
Q Consensus 266 ~spdg~~l~s~~~d~~v~~w~ 286 (288)
|.|.-..|++++++..+.-|+
T Consensus 182 Y~~~tDsfvt~sss~~l~~Yk 202 (418)
T PF14727_consen 182 YCPRTDSFVTASSSWTLECYK 202 (418)
T ss_pred EeecCCEEEEecCceeEEEec
Confidence 899999999999888887775
No 433
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=58.61 E-value=98 Score=25.09 Aligned_cols=58 Identities=19% Similarity=0.268 Sum_probs=39.5
Q ss_pred CEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEe------eCCCcEEEe
Q 036510 24 KRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASC------SFDGTVIIW 84 (288)
Q Consensus 24 ~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~------s~d~~v~iw 84 (288)
..|+.+...+.|.+|++..+.-+.+.++..- +.|..+.++.. |++++|- +....+|+|
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~--GDYlvTlE~k~~~~~~~fvR~Y 92 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEA--GDYLVTLEEKNKRSPVDFVRAY 92 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccc--cceEEEEEeecCCccceEEEEE
Confidence 4554446667899999974444556666543 78999999864 8999974 222366776
No 434
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=55.10 E-value=1.8e+02 Score=27.14 Aligned_cols=78 Identities=15% Similarity=0.236 Sum_probs=44.9
Q ss_pred eEEEEecCCCCCCEEEEeeCCCcEEEee---------cCCCCceEEeEEee--------cCCCceeEEEeccCCC-CeEE
Q 036510 58 VWEVAWAHPKFGSILASCSFDGTVIIWK---------EGNSNEWIKDHVFE--------DHKSSVNSIDWAPHEL-GLCL 119 (288)
Q Consensus 58 v~~~~~~~~~~~~~l~s~s~d~~v~iwd---------~~~~~~~~~~~~~~--------~h~~~v~~l~~~p~~~-~~~l 119 (288)
|..+..++ .|..++-.+.+|-+.+.= +.+++.....+++. ...-.+..++|||+.. .-.|
T Consensus 106 V~~vl~s~--~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 106 VYQVLLSP--TGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL 183 (741)
T ss_pred EEEEEecC--CCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence 45555554 377777777788777642 12232222222221 1122466789999841 1235
Q ss_pred EEEeCCCcEEEEeecCCC
Q 036510 120 ACGSSDGNISVFTARADG 137 (288)
Q Consensus 120 ~sg~~d~~i~i~d~~~~~ 137 (288)
..-..|+.||+|+.....
T Consensus 184 ~iL~sdnviRiy~lS~~t 201 (741)
T KOG4460|consen 184 VLLTSDNVIRIYSLSEPT 201 (741)
T ss_pred EEEecCcEEEEEecCCcc
Confidence 556789999999987653
No 435
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=55.09 E-value=1.2 Score=40.05 Aligned_cols=129 Identities=16% Similarity=0.224 Sum_probs=77.4
Q ss_pred EEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCC-EEEEeeCCCcEEEeecCCCCceEEe
Q 036510 17 VAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGS-ILASCSFDGTVIIWKEGNSNEWIKD 95 (288)
Q Consensus 17 ~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~-~l~s~s~d~~v~iwd~~~~~~~~~~ 95 (288)
..|-+.+.-++.++.+..+..||-.++ .. .-...++...+++|.. ++. .++.+-..+.+.+||+....+. .
T Consensus 40 ~~w~~e~~nlavaca~tiv~~YD~agq---~~-le~n~tg~aldm~wDk--egdvlavlAek~~piylwd~n~eytq--q 111 (615)
T KOG2247|consen 40 HRWRPEGHNLAVACANTIVIYYDKAGQ---VI-LELNPTGKALDMAWDK--EGDVLAVLAEKTGPIYLWDVNSEYTQ--Q 111 (615)
T ss_pred eeEecCCCceehhhhhhHHHhhhhhcc---ee-cccCCchhHhhhhhcc--ccchhhhhhhcCCCeeechhhhhhHH--H
Confidence 346676766888888988888886432 11 1112344455677754 244 4456677889999998643211 0
Q ss_pred EEee-cCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeecc-CCCCeeEEEeCCCC
Q 036510 96 HVFE-DHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQA-HPVGVTSVSWAPST 161 (288)
Q Consensus 96 ~~~~-~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~-~~~~v~~i~~~p~~ 161 (288)
.... .|.... +.|++. ...++.|...+++.||+-+..+. ....+ |...++++.|.+.+
T Consensus 112 LE~gg~~s~sl--l~wsKg--~~el~ig~~~gn~viynhgtsR~----iiv~Gkh~RRgtq~av~lEd 171 (615)
T KOG2247|consen 112 LESGGTSSKSL--LAWSKG--TPELVIGNNAGNIVIYNHGTSRR----IIVMGKHQRRGTQIAVTLED 171 (615)
T ss_pred HhccCcchHHH--HhhccC--CccccccccccceEEEeccchhh----hhhhcccccceeEEEecccc
Confidence 1111 122211 567765 34466777889999998654322 12234 77889999998875
No 436
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=53.17 E-value=3.7 Score=20.27 Aligned_cols=8 Identities=25% Similarity=0.613 Sum_probs=6.0
Q ss_pred EeecCCCE
Q 036510 265 SWSLTGNI 272 (288)
Q Consensus 265 ~~spdg~~ 272 (288)
.|||+|++
T Consensus 7 ~FSp~Grl 14 (23)
T PF10584_consen 7 TFSPDGRL 14 (23)
T ss_dssp SBBTTSSB
T ss_pred eECCCCeE
Confidence 48888875
No 437
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=53.12 E-value=2.6e+02 Score=28.28 Aligned_cols=90 Identities=13% Similarity=0.171 Sum_probs=53.3
Q ss_pred CcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEE
Q 036510 185 NTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRV 264 (288)
Q Consensus 185 ~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~ 264 (288)
|.|.++...+. ..++++++.. -++.|.++.--. +++|| +-...|++|++...+. ...--.+..++..+
T Consensus 807 GRIivfe~~e~-~~L~~v~e~~-v~Gav~aL~~fn-----gkllA--~In~~vrLye~t~~~e---Lr~e~~~~~~~~aL 874 (1096)
T KOG1897|consen 807 GRIIVFEFEEL-NSLELVAETV-VKGAVYALVEFN-----GKLLA--GINQSVRLYEWTTERE---LRIECNISNPIIAL 874 (1096)
T ss_pred ceEEEEEEecC-Cceeeeeeee-eccceeehhhhC-----CeEEE--ecCcEEEEEEccccce---ehhhhcccCCeEEE
Confidence 46777776652 2334444322 233445543222 34554 4455899999875421 11112345688899
Q ss_pred EeecCCCEEEEEeCCCcEEEeE
Q 036510 265 SWSLTGNILAVADGNNNVTLWE 286 (288)
Q Consensus 265 ~~spdg~~l~s~~~d~~v~~w~ 286 (288)
...-.|..+++|+.=+++.+-.
T Consensus 875 ~l~v~gdeI~VgDlm~Sitll~ 896 (1096)
T KOG1897|consen 875 DLQVKGDEIAVGDLMRSITLLQ 896 (1096)
T ss_pred EEEecCcEEEEeeccceEEEEE
Confidence 9999999999999888777643
No 438
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=52.31 E-value=1.5e+02 Score=25.44 Aligned_cols=178 Identities=13% Similarity=0.282 Sum_probs=77.9
Q ss_pred eeCCCcEEEeecCC-CCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCee
Q 036510 75 CSFDGTVIIWKEGN-SNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVT 153 (288)
Q Consensus 75 ~s~d~~v~iwd~~~-~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~ 153 (288)
.+..|. ||...+ +..|... ...-...+..+.-.++ +.+++.+...+-+.-|+.-. ..|.+... .-...|.
T Consensus 120 ~~~~G~--iy~T~DgG~tW~~~--~~~~~gs~~~~~r~~d--G~~vavs~~G~~~~s~~~G~-~~w~~~~r--~~~~riq 190 (302)
T PF14870_consen 120 AGDRGA--IYRTTDGGKTWQAV--VSETSGSINDITRSSD--GRYVAVSSRGNFYSSWDPGQ-TTWQPHNR--NSSRRIQ 190 (302)
T ss_dssp EETT----EEEESSTTSSEEEE--E-S----EEEEEE-TT--S-EEEEETTSSEEEEE-TT--SS-EEEE----SSS-EE
T ss_pred EcCCCc--EEEeCCCCCCeeEc--ccCCcceeEeEEECCC--CcEEEEECcccEEEEecCCC-ccceEEcc--Cccceeh
Confidence 344444 444444 3456432 2334466777776766 67776665444444565321 12544322 2346788
Q ss_pred EEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCC--ceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEE
Q 036510 154 SVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNG--IWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASA 231 (288)
Q Consensus 154 ~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~--~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~ 231 (288)
++.|.|++ . |......+.|+.=|.... .+. +.+..+..-...+.+++|.++. ...|+|
T Consensus 191 ~~gf~~~~--------------~-lw~~~~Gg~~~~s~~~~~~~~w~-~~~~~~~~~~~~~ld~a~~~~~----~~wa~g 250 (302)
T PF14870_consen 191 SMGFSPDG--------------N-LWMLARGGQIQFSDDPDDGETWS-EPIIPIKTNGYGILDLAYRPPN----EIWAVG 250 (302)
T ss_dssp EEEE-TTS----------------EEEEETTTEEEEEE-TTEEEEE----B-TTSS--S-EEEEEESSSS-----EEEEE
T ss_pred hceecCCC--------------C-EEEEeCCcEEEEccCCCCccccc-cccCCcccCceeeEEEEecCCC----CEEEEe
Confidence 99999985 2 333335566665541111 111 1111111222338899999863 445544
Q ss_pred eCCCcEEEEEeecCCCcccceE-eeccccCeEEEEeecCCCEEEEEeCCCcEEEe
Q 036510 232 SEDGKVIIWTVAREGDQWEGKV-LHDFKTPVYRVSWSLTGNILAVADGNNNVTLW 285 (288)
Q Consensus 232 s~D~~i~iw~~~~~~~~~~~~~-~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w 285 (288)
..+++.. -...++.++... .....+.++.+.|.++.+-|+.| .+|.+-=|
T Consensus 251 -g~G~l~~--S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG-~~G~ll~~ 301 (302)
T PF14870_consen 251 -GSGTLLV--STDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG-QDGVLLRY 301 (302)
T ss_dssp -STT-EEE--ESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred -CCccEEE--eCCCCccceECccccCCCCceEEEEEcCCCceEEEC-CCcEEEEe
Confidence 4444422 233333443322 12334568999999888888877 66766433
No 439
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=52.30 E-value=42 Score=32.53 Aligned_cols=32 Identities=16% Similarity=0.421 Sum_probs=25.5
Q ss_pred cceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecC
Q 036510 210 DWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVARE 245 (288)
Q Consensus 210 ~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~ 245 (288)
..+.+|+-+|. ++-+|+++.|+.|++|+....
T Consensus 15 e~~~aiqshp~----~~s~v~~~~d~si~lfn~~~r 46 (1636)
T KOG3616|consen 15 EFTTAIQSHPG----GQSFVLAHQDGSIILFNFIPR 46 (1636)
T ss_pred ceeeeeeecCC----CceEEEEecCCcEEEEeeccc
Confidence 34677888886 367999999999999987643
No 440
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=51.80 E-value=1.8 Score=39.04 Aligned_cols=139 Identities=11% Similarity=0.184 Sum_probs=79.2
Q ss_pred CCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccC
Q 036510 69 GSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAH 148 (288)
Q Consensus 69 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~ 148 (288)
+.-++-+..+..+..||-.... .... ...+..-.++|..+. ..+++.+...+.+.+||+.+... +.......|
T Consensus 46 ~~nlavaca~tiv~~YD~agq~----~le~-n~tg~aldm~wDkeg-dvlavlAek~~piylwd~n~eyt-qqLE~gg~~ 118 (615)
T KOG2247|consen 46 GHNLAVACANTIVIYYDKAGQV----ILEL-NPTGKALDMAWDKEG-DVLAVLAEKTGPIYLWDVNSEYT-QQLESGGTS 118 (615)
T ss_pred CCceehhhhhhHHHhhhhhcce----eccc-CCchhHhhhhhcccc-chhhhhhhcCCCeeechhhhhhH-HHHhccCcc
Confidence 3447778888999999864221 1111 123344556666643 33455556778999999865422 111111112
Q ss_pred CCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEE
Q 036510 149 PVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTI 228 (288)
Q Consensus 149 ~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l 228 (288)
.... +.|++.. ..++-+--.+.+.|++..+. +.+..+..|.-++..+++.+. .++
T Consensus 119 s~sl--l~wsKg~--------------~el~ig~~~gn~viynhgts----R~iiv~Gkh~RRgtq~av~lE-----d~v 173 (615)
T KOG2247|consen 119 SKSL--LAWSKGT--------------PELVIGNNAGNIVIYNHGTS----RRIIVMGKHQRRGTQIAVTLE-----DYV 173 (615)
T ss_pred hHHH--HhhccCC--------------ccccccccccceEEEeccch----hhhhhhcccccceeEEEeccc-----cee
Confidence 2221 5677655 33555556778888887653 122222337777888888885 467
Q ss_pred EEEeCCCcEEE
Q 036510 229 ASASEDGKVII 239 (288)
Q Consensus 229 ~s~s~D~~i~i 239 (288)
+.++.|..+.+
T Consensus 174 il~dcd~~L~v 184 (615)
T KOG2247|consen 174 ILCDCDNTLSV 184 (615)
T ss_pred eecCcHHHHHH
Confidence 77777765544
No 441
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=50.85 E-value=3.1e+02 Score=28.60 Aligned_cols=30 Identities=23% Similarity=0.395 Sum_probs=25.8
Q ss_pred ccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510 258 KTPVYRVSWSLTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 258 ~~~i~~~~~spdg~~l~s~~~d~~v~~w~~ 287 (288)
..+|..++....-..+.+-+..++|++|++
T Consensus 242 ~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i 271 (1311)
T KOG1900|consen 242 KDPIRQITIDNSRNILYVLSEKGTVSAYDI 271 (1311)
T ss_pred CCcceeeEeccccceeeeeccCceEEEEEc
Confidence 458888888777888999999999999995
No 442
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=50.52 E-value=2.7e+02 Score=28.87 Aligned_cols=115 Identities=11% Similarity=0.103 Sum_probs=61.8
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCC
Q 036510 11 EDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSN 90 (288)
Q Consensus 11 ~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~ 90 (288)
.++|..++ .-+| +|+++.. -+|.+|+++....-.-..+. .-+++-..-. ...++++.|..=+.|.+......
T Consensus 1097 KGtVsavc-eV~G-~l~~~~G-qKI~v~~l~r~~~ligVaFi--D~~~yv~s~~--~vknlIl~gDV~ksisfl~fqee- 1168 (1366)
T KOG1896|consen 1097 KGTVSAVC-EVRG-HLLSSQG-QKIIVRKLDRDSELIGVAFI--DLPLYVHSMK--VVKNLILAGDVMKSISFLGFQEE- 1168 (1366)
T ss_pred ccceEEEE-Eecc-EEEEccC-cEEEEEEeccCCcceeeEEe--ccceeEEehh--hhhhheehhhhhhceEEEEEccC-
Confidence 45665543 2357 4555444 46889988533210001111 1111111111 12456666666666666544321
Q ss_pred ceEEeEEee--cCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeec
Q 036510 91 EWIKDHVFE--DHKSSVNSIDWAPHELGLCLACGSSDGNISVFTAR 134 (288)
Q Consensus 91 ~~~~~~~~~--~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~ 134 (288)
......+. ...-.++++.|--++....++++..|++|++|-..
T Consensus 1169 -p~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~ 1213 (1366)
T KOG1896|consen 1169 -PYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMYA 1213 (1366)
T ss_pred -ceEEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEeC
Confidence 22233232 23346888999888777789999999999997543
No 443
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=49.56 E-value=29 Score=21.32 Aligned_cols=19 Identities=26% Similarity=0.190 Sum_probs=15.8
Q ss_pred ceEEEEEcCCCCEEEEeeC
Q 036510 13 TVHDVAMDYYGKRLATASS 31 (288)
Q Consensus 13 ~v~~~~~s~~g~~l~s~~~ 31 (288)
.++++.+.|||++|++|..
T Consensus 2 ~~~~~~~q~DGkIlv~G~~ 20 (55)
T TIGR02608 2 RAYAVAVQSDGKILVAGYV 20 (55)
T ss_pred ceEEEEECCCCcEEEEEEe
Confidence 4678889999999998864
No 444
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=49.01 E-value=47 Score=31.08 Aligned_cols=36 Identities=25% Similarity=0.236 Sum_probs=24.1
Q ss_pred ceEEEEEcC----CCCEEEEeeCCCcEEEEEeCCCCceeeEE
Q 036510 13 TVHDVAMDY----YGKRLATASSDYSIKIIGVGNNTSQHLAK 50 (288)
Q Consensus 13 ~v~~~~~s~----~g~~l~s~~~d~~i~lwd~~~~~~~~~~~ 50 (288)
.+..+.+.. +..+|++-+.|+++|+||+... +++.+
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~--~~~~~ 255 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETG--QCLAT 255 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTT--CEEEE
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCC--eEEEE
Confidence 334445544 5689999999999999999643 44444
No 445
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=47.56 E-value=1.7e+02 Score=24.66 Aligned_cols=64 Identities=13% Similarity=0.040 Sum_probs=40.2
Q ss_pred CCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCC
Q 036510 23 GKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSN 90 (288)
Q Consensus 23 g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~ 90 (288)
|+.++-|++.+.+.+.++..+ +.+..+.. .+.|..-+.- +.++..+-.++.|+....-|.++..
T Consensus 63 gdfVV~GCy~g~lYfl~~~tG--s~~w~f~~-~~~vk~~a~~-d~~~glIycgshd~~~yalD~~~~~ 126 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTG--SQIWNFVI-LETVKVRAQC-DFDGGLIYCGSHDGNFYALDPKTYG 126 (354)
T ss_pred CCEEEEEEccCcEEEEEecch--hheeeeee-hhhhccceEE-cCCCceEEEecCCCcEEEecccccc
Confidence 667888999998888887543 22222221 1122211111 2347899999999999999987654
No 446
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=44.67 E-value=2.5e+02 Score=25.75 Aligned_cols=56 Identities=14% Similarity=0.233 Sum_probs=31.6
Q ss_pred eeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCcee-eeeeecc-c-cCCcceEEEEecCCC
Q 036510 152 VTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWK-MDCFPAL-Q-MHTDWVRDVAWAPNL 221 (288)
Q Consensus 152 v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~-~-~h~~~V~~v~~sp~~ 221 (288)
-..|.|.|++ ++|++--..+.|++++...+... ...+..+ . ........|+|+|+.
T Consensus 32 Pw~maflPDG--------------~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 32 PWALLWGPDN--------------QLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred ceEEEEcCCC--------------eEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 4567788876 56665443588888875443211 0011111 1 123457899999985
No 447
>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]
Probab=44.66 E-value=1.1e+02 Score=30.51 Aligned_cols=27 Identities=15% Similarity=0.158 Sum_probs=20.8
Q ss_pred cCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510 259 TPVYRVSWSLTGNILAVADGNNNVTLWEE 287 (288)
Q Consensus 259 ~~i~~~~~spdg~~l~s~~~d~~v~~w~~ 287 (288)
-.|.++.=+.||+.|.+|-.| +.||.+
T Consensus 182 inV~civs~e~GrIFf~g~~d--~nvyEl 208 (1263)
T COG5308 182 INVRCIVSEEDGRIFFGGEND--PNVYEL 208 (1263)
T ss_pred ceeEEEEeccCCcEEEecCCC--CCeEEE
Confidence 356777777799999988776 778863
No 448
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=43.33 E-value=1.9e+02 Score=24.02 Aligned_cols=57 Identities=7% Similarity=0.120 Sum_probs=36.6
Q ss_pred EEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEee
Q 036510 18 AMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCS 76 (288)
Q Consensus 18 ~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s 76 (288)
+...+|++.++.-..++|.-.|. .+++.+..+.-.+..|++++|--+.-..+.+++.
T Consensus 218 ~ID~eG~L~Va~~ng~~V~~~dp--~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~a 274 (310)
T KOG4499|consen 218 TIDTEGNLYVATFNGGTVQKVDP--TTGKILLEIKLPTPQITSCCFGGKNLDILYVTTA 274 (310)
T ss_pred eEccCCcEEEEEecCcEEEEECC--CCCcEEEEEEcCCCceEEEEecCCCccEEEEEeh
Confidence 34556777777777776665554 3457787777778999999996432222334443
No 449
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=42.31 E-value=80 Score=21.59 Aligned_cols=42 Identities=19% Similarity=0.163 Sum_probs=22.9
Q ss_pred eCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEe
Q 036510 232 SEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVAD 277 (288)
Q Consensus 232 s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~ 277 (288)
..+|.+--||+..++ .+.+.+-=.-.+.|+.+||++.++++-
T Consensus 34 ~~~GRll~ydp~t~~----~~vl~~~L~fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 34 RPTGRLLRYDPSTKE----TTVLLDGLYFPNGVALSPDESFVLVAE 75 (89)
T ss_dssp ---EEEEEEETTTTE----EEEEEEEESSEEEEEE-TTSSEEEEEE
T ss_pred CCCcCEEEEECCCCe----EEEehhCCCccCeEEEcCCCCEEEEEe
Confidence 345556677766431 122221112467899999999988773
No 450
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=41.26 E-value=53 Score=16.91 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=18.4
Q ss_pred ceEEEEecCCCCCCCcEEEEEeCCCcEEEE
Q 036510 211 WVRDVAWAPNLGLPKSTIASASEDGKVIIW 240 (288)
Q Consensus 211 ~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw 240 (288)
.|.+++..+ ++++.+.+-+.+|+|
T Consensus 3 ~i~aia~g~------~~vavaTS~~~lRif 26 (27)
T PF12341_consen 3 EIEAIAAGD------SWVAVATSAGYLRIF 26 (27)
T ss_pred eEEEEEccC------CEEEEEeCCCeEEec
Confidence 367777765 478888888899987
No 451
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=40.43 E-value=72 Score=31.05 Aligned_cols=31 Identities=16% Similarity=0.143 Sum_probs=26.3
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCcEEEEEeC
Q 036510 11 EDTVHDVAMDYYGKRLATASSDYSIKIIGVG 41 (288)
Q Consensus 11 ~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~ 41 (288)
...+++++-.|.|+-+++++.|+++++|++.
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~ 44 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFI 44 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeec
Confidence 4456677777999999999999999999974
No 452
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=39.35 E-value=3.1e+02 Score=25.27 Aligned_cols=63 Identities=13% Similarity=0.109 Sum_probs=34.8
Q ss_pred CCEEEEeeCCCcEEEEEeCCCCceeeEEEecccc------Ce--EEEEecCCCCCCEEEEeeCCCcEEEeecCCCC
Q 036510 23 GKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKG------AV--WEVAWAHPKFGSILASCSFDGTVIIWKEGNSN 90 (288)
Q Consensus 23 g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~------~v--~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~ 90 (288)
+..+..++.++.+...|... ++.+-+...... .+ ..+... ++..+..++.++.|.-+|..+++
T Consensus 61 ~g~vy~~~~~g~l~AlD~~t--G~~~W~~~~~~~~~~~~~~~~~~g~~~~---~~~~V~v~~~~g~v~AlD~~TG~ 131 (488)
T cd00216 61 DGDMYFTTSHSALFALDAAT--GKVLWRYDPKLPADRGCCDVVNRGVAYW---DPRKVFFGTFDGRLVALDAETGK 131 (488)
T ss_pred CCEEEEeCCCCcEEEEECCC--ChhhceeCCCCCccccccccccCCcEEc---cCCeEEEecCCCeEEEEECCCCC
Confidence 33556677778777777643 333333322111 00 011111 12567777889999999998776
No 453
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=39.25 E-value=2.5e+02 Score=24.06 Aligned_cols=155 Identities=11% Similarity=0.144 Sum_probs=0.0
Q ss_pred CCCEEEEeeCC-----CcEEEEEeCCCCc----eeeEEEeccccCeEEEEecCCCCCCEEEEeeC-----CCcEEEeecC
Q 036510 22 YGKRLATASSD-----YSIKIIGVGNNTS----QHLAKLSGHKGAVWEVAWAHPKFGSILASCSF-----DGTVIIWKEG 87 (288)
Q Consensus 22 ~g~~l~s~~~d-----~~i~lwd~~~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-----d~~v~iwd~~ 87 (288)
++.+++.|+.+ ..+..+|+..... ..+..+............. +.+++.|+. ...+..||+.
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~----~~iYv~GG~~~~~~~~~v~~yd~~ 147 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKD----GTLYVGGGNRNGKPSNKSYLFNLE 147 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEEC----CEEEEEeCcCCCccCceEEEEcCC
Q ss_pred CCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCC----CcEEEEeecCCCCeeeEEee----ccCCCCeeEEEeCC
Q 036510 88 NSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSD----GNISVFTARADGGWDTSRID----QAHPVGVTSVSWAP 159 (288)
Q Consensus 88 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d----~~i~i~d~~~~~~~~~~~~~----~~~~~~v~~i~~~p 159 (288)
+ ++|.....++.....-.++...- +.+.+.|+.+ ..+..||++++. |...... ...........-..
T Consensus 148 ~-~~W~~~~~~p~~~r~~~~~~~~~---~~iYv~GG~~~~~~~~~~~yd~~~~~-W~~~~~~~~~~~p~~~~~~~~~~~~ 222 (323)
T TIGR03548 148 T-QEWFELPDFPGEPRVQPVCVKLQ---NELYVFGGGSNIAYTDGYKYSPKKNQ-WQKVADPTTDSEPISLLGAASIKIN 222 (323)
T ss_pred C-CCeeECCCCCCCCCCcceEEEEC---CEEEEEcCCCCccccceEEEecCCCe-eEECCCCCCCCCceeccceeEEEEC
Q ss_pred CCCCCceecccccCCCceeEEeecC-------------------------------------CcEEEEEEeCCceee
Q 036510 160 STAPGALVGSGFLDPVQKLCSGGCD-------------------------------------NTVKVWKLYNGIWKM 199 (288)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~l~s~~~d-------------------------------------~~i~iwd~~~~~~~~ 199 (288)
++ .+++.|+.+ +.+.+||..+.+|..
T Consensus 223 ~~--------------~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~ 285 (323)
T TIGR03548 223 ES--------------LLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKS 285 (323)
T ss_pred CC--------------EEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeE
No 454
>PRK10526 acyl-CoA thioesterase II; Provisional
Probab=37.66 E-value=1.3e+02 Score=25.57 Aligned_cols=57 Identities=18% Similarity=0.245 Sum_probs=37.7
Q ss_pred EEEeeCCCcEEEeecCCCCceEEeEEeecCC----CceeEEEeccCCCCeEEEEEeCCCcEEE
Q 036510 72 LASCSFDGTVIIWKEGNSNEWIKDHVFEDHK----SSVNSIDWAPHELGLCLACGSSDGNISV 130 (288)
Q Consensus 72 l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~----~~v~~l~~~p~~~~~~l~sg~~d~~i~i 130 (288)
+..+|.|.+|.+.+....+.|.+......+. .-+..=-|+++ |.++|++.+++.|+.
T Consensus 224 ~~~aSLdhsi~Fh~~~~~d~W~L~~~~s~~a~~gr~~~~g~i~~~~--G~LvAs~~Qegl~r~ 284 (286)
T PRK10526 224 MQIATIDHSMWFHRPFNLNEWLLYSVESTSASSARGFVRGEFYTQD--GVLVASTVQEGVMRN 284 (286)
T ss_pred ceEEeeeEeEEEeCCCCCCceEEEEEECCcccCCceEEEEEEECCC--CCEEEEEEeeEEEEe
Confidence 5567999999888766567776655443222 22333346665 788999998887765
No 455
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=37.41 E-value=3.3e+02 Score=25.07 Aligned_cols=20 Identities=10% Similarity=0.016 Sum_probs=16.4
Q ss_pred eeEEeecCCcEEEEEEeCCc
Q 036510 177 KLCSGGCDNTVKVWKLYNGI 196 (288)
Q Consensus 177 ~l~s~~~d~~i~iwd~~~~~ 196 (288)
.++.++.++.+...|.+++.
T Consensus 303 ~V~~g~~~G~l~ald~~tG~ 322 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGK 322 (488)
T ss_pred EEEEECCCceEEEEECCCCc
Confidence 57778889999999998874
No 456
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=37.13 E-value=1.9e+02 Score=24.75 Aligned_cols=72 Identities=18% Similarity=0.267 Sum_probs=44.9
Q ss_pred ceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEecccc-Ce--EEEEecCCCCCCEEEEeeCCCcEEEeec
Q 036510 13 TVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKG-AV--WEVAWAHPKFGSILASCSFDGTVIIWKE 86 (288)
Q Consensus 13 ~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~-~v--~~~~~~~~~~~~~l~s~s~d~~v~iwd~ 86 (288)
-+++|...++|++|+|+-.-.+|.+.+- .+++.+-.+.|... .. ....|+...+.+.+-....++.|.++|-
T Consensus 145 HiNsV~~~~~G~yLiS~R~~~~i~~I~~--~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN 219 (299)
T PF14269_consen 145 HINSVDKDDDGDYLISSRNTSTIYKIDP--STGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDN 219 (299)
T ss_pred EeeeeeecCCccEEEEecccCEEEEEEC--CCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcC
Confidence 4567777788999999888777766553 44566777766521 11 1122332223455555677888888875
No 457
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=36.90 E-value=49 Score=32.27 Aligned_cols=101 Identities=15% Similarity=0.253 Sum_probs=54.1
Q ss_pred EEEEEcCCCCEEEEeeCCCc-----EEEEEeCCCC-ceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCC
Q 036510 15 HDVAMDYYGKRLATASSDYS-----IKIIGVGNNT-SQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGN 88 (288)
Q Consensus 15 ~~~~~s~~g~~l~s~~~d~~-----i~lwd~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~ 88 (288)
..++|.|.|..+++-+.|+. |..+..++-+ ++. ..-.+-...+..++|.-. ..+...+..+.+++|-..+
T Consensus 250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef-~lr~~~dEk~~~~~wn~~---s~vlav~~~n~~~lwttkN 325 (1243)
T COG5290 250 HQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEF-DLRVGCDEKAFLENWNLL---STVLAVAEGNLLKLWTTKN 325 (1243)
T ss_pred hccccccCCceeeeeccCCCCCcceEEEEccCCcccCCc-cccCCchhhhhhhhhhHH---HHHHHHhhcceEEEEEccc
Confidence 45789999999999776542 4455432210 111 000122333455667531 2233445667999996543
Q ss_pred CCceEEeEEeecCCCceeEEEeccCCCCeEEEEE
Q 036510 89 SNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACG 122 (288)
Q Consensus 89 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg 122 (288)
- -|-+...+ ....+.-+.|||.....++.++
T Consensus 326 y-hWYLK~e~--~ip~~s~vkwhpe~~nTl~f~d 356 (1243)
T COG5290 326 Y-HWYLKVER--QIPGISYVKWHPEEKNTLLFRD 356 (1243)
T ss_pred e-EEEEEEee--cCCCcceeeeccccCcEEEEec
Confidence 2 23222222 2234667899998755555554
No 458
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=36.86 E-value=64 Score=17.76 Aligned_cols=20 Identities=25% Similarity=0.415 Sum_probs=15.2
Q ss_pred CCCEEEEEeCCCcEEEeEcC
Q 036510 269 TGNILAVADGNNNVTLWEEA 288 (288)
Q Consensus 269 dg~~l~s~~~d~~v~~w~~~ 288 (288)
++..+..++.|+.+..+|.+
T Consensus 20 ~~g~vyv~~~dg~l~ald~~ 39 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAA 39 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT
T ss_pred ECCEEEEEcCCCEEEEEeCC
Confidence 56678888899999988853
No 459
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=33.43 E-value=3.5e+02 Score=24.06 Aligned_cols=123 Identities=18% Similarity=0.279 Sum_probs=60.4
Q ss_pred cccccc-ccceEEEEEcCCCCEEEE-eeCC----CcEEEEEeCCCCceeeE-EEeccccCeEEEEecCCCCCCEEEEeeC
Q 036510 5 KIETGH-EDTVHDVAMDYYGKRLAT-ASSD----YSIKIIGVGNNTSQHLA-KLSGHKGAVWEVAWAHPKFGSILASCSF 77 (288)
Q Consensus 5 ~~~~~h-~~~v~~~~~s~~g~~l~s-~~~d----~~i~lwd~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~~l~s~s~ 77 (288)
++..++ ...+...++||+|++||- -+.. .++++.|+..+ +.+. .+..- ....+.|.++ ++.|+-...
T Consensus 116 ~l~~~~~~~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg--~~l~d~i~~~--~~~~~~W~~d--~~~~~y~~~ 189 (414)
T PF02897_consen 116 ELAKDGGYVSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETG--KFLPDGIENP--KFSSVSWSDD--GKGFFYTRF 189 (414)
T ss_dssp GGSTTSS-EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTT--EEEEEEEEEE--ESEEEEECTT--SSEEEEEEC
T ss_pred HhhccCceEEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCC--cCcCCccccc--ccceEEEeCC--CCEEEEEEe
Confidence 333344 233345789999998763 3433 34888888543 3332 22211 1123899864 566655443
Q ss_pred CC-----------cEEEeecCCCCceEEeEEeecCCCc--eeEEEeccCCCCeEEEEEeCCC---cEEEEeecC
Q 036510 78 DG-----------TVIIWKEGNSNEWIKDHVFEDHKSS--VNSIDWAPHELGLCLACGSSDG---NISVFTARA 135 (288)
Q Consensus 78 d~-----------~v~iwd~~~~~~~~~~~~~~~h~~~--v~~l~~~p~~~~~~l~sg~~d~---~i~i~d~~~ 135 (288)
+. .|..|.+.+...- ....+...... ...+..++++ ..+++...... .+.+.++..
T Consensus 190 ~~~~~~~~~~~~~~v~~~~~gt~~~~-d~lvfe~~~~~~~~~~~~~s~d~-~~l~i~~~~~~~~s~v~~~d~~~ 261 (414)
T PF02897_consen 190 DEDQRTSDSGYPRQVYRHKLGTPQSE-DELVFEEPDEPFWFVSVSRSKDG-RYLFISSSSGTSESEVYLLDLDD 261 (414)
T ss_dssp STTTSS-CCGCCEEEEEEETTS-GGG--EEEEC-TTCTTSEEEEEE-TTS-SEEEEEEESSSSEEEEEEEECCC
T ss_pred CcccccccCCCCcEEEEEECCCChHh-CeeEEeecCCCcEEEEEEecCcc-cEEEEEEEccccCCeEEEEeccc
Confidence 33 3677777654321 11233333333 4567777774 23333333333 355555554
No 460
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=32.28 E-value=90 Score=16.97 Aligned_cols=29 Identities=14% Similarity=0.320 Sum_probs=17.7
Q ss_pred CCCCEEEEee-CCCcEEEEEeCCCCceeeEEE
Q 036510 21 YYGKRLATAS-SDYSIKIIGVGNNTSQHLAKL 51 (288)
Q Consensus 21 ~~g~~l~s~~-~d~~i~lwd~~~~~~~~~~~~ 51 (288)
|++++|..+. .+++|.++|... .+.+..+
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~--~~~~~~i 30 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTAT--NKVIATI 30 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCC--CeEEEEE
Confidence 5677665555 578888888743 3444444
No 461
>cd03444 Thioesterase_II_repeat1 Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=31.74 E-value=1.5e+02 Score=20.63 Aligned_cols=54 Identities=17% Similarity=0.237 Sum_probs=28.3
Q ss_pred EEEEeeCCCcEEEeecCCCCceEEeEEeec----CCCceeEEEeccCCCCeEEEEEeCCC
Q 036510 71 ILASCSFDGTVIIWKEGNSNEWIKDHVFED----HKSSVNSIDWAPHELGLCLACGSSDG 126 (288)
Q Consensus 71 ~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~----h~~~v~~l~~~p~~~~~~l~sg~~d~ 126 (288)
....+|-|.+|.+.+......|........ ...-+.+--|+++ |.++|++.+++
T Consensus 45 ~~~~aSldhsi~Fh~~~~~~~W~l~~~~~~~~~~gr~~~~~~l~~~~--G~LvAs~~Q~~ 102 (104)
T cd03444 45 ASASASLDHAIWFHRPFRADDWLLYEQRSPRAGNGRGLVEGRIFTRD--GELVASVAQEG 102 (104)
T ss_pred CcceEeeeEEEEEeCCCCCCceEEEEEECccccCCeeEEEEEEECCC--CCEEEEEEEee
Confidence 345677778887776544445544333221 1122333345554 66677666554
No 462
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=30.56 E-value=3.6e+02 Score=23.33 Aligned_cols=110 Identities=13% Similarity=0.176 Sum_probs=64.0
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEEEeCCCCcee-eEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEE
Q 036510 16 DVAMDYYGKRLATASSDYSIKIIGVGNNTSQH-LAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIK 94 (288)
Q Consensus 16 ~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~ 94 (288)
.+.++ +++..-+..+.-+++.|+..++.+. +..+.- .+-.+++..+ |++.-.+..|.-..+.|+.+.....+
T Consensus 91 Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt-~gyaygv~vs----Gn~aYVadlddgfLivdvsdpssP~l 163 (370)
T COG5276 91 DVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNT-DGYAYGVYVS----GNYAYVADLDDGFLIVDVSDPSSPQL 163 (370)
T ss_pred eeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccC-CceEEEEEec----CCEEEEeeccCcEEEEECCCCCCcee
Confidence 34455 5677778888889999997654332 333322 1223444443 67776666455555668877654433
Q ss_pred eEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCC
Q 036510 95 DHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARAD 136 (288)
Q Consensus 95 ~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~ 136 (288)
...+......-..+..+ +.+...+..|+-+.+-|+...
T Consensus 164 agrya~~~~d~~~v~IS----Gn~AYvA~~d~GL~ivDVSnp 201 (370)
T COG5276 164 AGRYALPGGDTHDVAIS----GNYAYVAWRDGGLTIVDVSNP 201 (370)
T ss_pred eeeeccCCCCceeEEEe----cCeEEEEEeCCCeEEEEccCC
Confidence 33333333333445544 344555668888999988654
No 463
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=29.56 E-value=1.1e+02 Score=16.99 Aligned_cols=22 Identities=23% Similarity=0.232 Sum_probs=18.3
Q ss_pred cceEEEEEcCCCCEEEEeeCCC
Q 036510 12 DTVHDVAMDYYGKRLATASSDY 33 (288)
Q Consensus 12 ~~v~~~~~s~~g~~l~s~~~d~ 33 (288)
....+|+++++|+..++|..++
T Consensus 13 ~~~~~IavD~~GNiYv~G~T~~ 34 (38)
T PF06739_consen 13 DYGNGIAVDSNGNIYVTGYTNG 34 (38)
T ss_pred eeEEEEEECCCCCEEEEEeecC
Confidence 5578899999999999887765
No 464
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=28.10 E-value=6e+02 Score=25.14 Aligned_cols=69 Identities=19% Similarity=0.161 Sum_probs=44.3
Q ss_pred ceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccc-------eEe-----eccc----cCeEEEEeecCCCEEE
Q 036510 211 WVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEG-------KVL-----HDFK----TPVYRVSWSLTGNILA 274 (288)
Q Consensus 211 ~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~-------~~~-----~~~~----~~i~~~~~spdg~~l~ 274 (288)
.|.+|..... +..|+-+-.||+|.++|....+..... ..+ .++. .++.-++|||++-.++
T Consensus 261 ~V~si~~~~~----~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v 336 (753)
T PF11635_consen 261 RVVSITSPEL----DIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLV 336 (753)
T ss_pred eEEEEEeccc----CcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEE
Confidence 4556654432 457888899999999997654211000 101 1111 1344589999999999
Q ss_pred EEeCCCcEE
Q 036510 275 VADGNNNVT 283 (288)
Q Consensus 275 s~~~d~~v~ 283 (288)
.-+.|+.+.
T Consensus 337 ~~~~~~~~~ 345 (753)
T PF11635_consen 337 QIDEDGKTK 345 (753)
T ss_pred EEecCCCce
Confidence 999999865
No 465
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=27.36 E-value=2.6e+02 Score=27.66 Aligned_cols=147 Identities=14% Similarity=0.167 Sum_probs=74.2
Q ss_pred CEEEEeeCCCcEEEeecCCCC-ceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeee--EEeec
Q 036510 70 SILASCSFDGTVIIWKEGNSN-EWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDT--SRIDQ 146 (288)
Q Consensus 70 ~~l~s~s~d~~v~iwd~~~~~-~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~--~~~~~ 146 (288)
..+..++.++.+.|+.-.... ..............+.++.+++. -+..|..||++..|--...+.|+. .....
T Consensus 548 PTic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss~----Slgagl~dgt~a~y~rap~gSwd~ep~~~~~ 623 (925)
T KOG3522|consen 548 PTICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSSG----SLGAGLIDGTLAVYGRAPSGSWDGEPNISIP 623 (925)
T ss_pred CcccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhcccc----ccccCccCCccccccCCCCCCCCCCCccccc
Confidence 356677888888888654211 11111222233456777776653 245566777776653221111211 00001
Q ss_pred cCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCc
Q 036510 147 AHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKS 226 (288)
Q Consensus 147 ~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~ 226 (288)
.-..++.+..+. .-++-++++|.|.++...+-....+ ......|...|+++.+..++
T Consensus 624 ~g~lPvrsla~~-----------------ed~~was~gG~V~vi~~tt~~~~~~-leahqee~~~Vthm~~~~~g----- 680 (925)
T KOG3522|consen 624 TGSLPVRSLAFQ-----------------EDFVWASEGGCVHVIPSTTFIRSWD-LEAHQEEAHSVTHMLYLDNG----- 680 (925)
T ss_pred cCCccccchhhh-----------------hceeeeecCCceEEEechhccccch-hHHHHhhcceEEEEEeeCCc-----
Confidence 111223333332 2255677899999998866422111 11223455568888887653
Q ss_pred EEEEEeCCCcEEEEEee
Q 036510 227 TIASASEDGKVIIWTVA 243 (288)
Q Consensus 227 ~l~s~s~D~~i~iw~~~ 243 (288)
..++-....+++.+...
T Consensus 681 VwvafasG~~~rlfhte 697 (925)
T KOG3522|consen 681 VWVAFASGDEERLFHTE 697 (925)
T ss_pred eEEEEcCCCEEEEeccc
Confidence 44444444466666443
No 466
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=25.29 E-value=5e+02 Score=23.26 Aligned_cols=200 Identities=13% Similarity=0.051 Sum_probs=94.5
Q ss_pred CCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEE--EecCCCCCCE--EEEeeC-C---CcEEEeecCCCCceE
Q 036510 22 YGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEV--AWAHPKFGSI--LASCSF-D---GTVIIWKEGNSNEWI 93 (288)
Q Consensus 22 ~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~--~~~~~~~~~~--l~s~s~-d---~~v~iwd~~~~~~~~ 93 (288)
.-++++...+.+-+.+||+++ +.++.+. .+.++.+ .+..+..+.. |+.++. + .+|++|.+...+..
T Consensus 67 ~kSlIigTdK~~GL~VYdL~G---k~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~- 140 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLDG---KELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE- 140 (381)
T ss_dssp GG-EEEEEETTTEEEEEETTS----EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE-
T ss_pred ccceEEEEeCCCCEEEEcCCC---cEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc-
Confidence 356888899999999999965 4455553 2333333 2211111332 344443 2 57999977432211
Q ss_pred EeEEe-------ecCCCceeEEEe--ccCCCCeEEEEEeCCCcEEEEeecCC-C-Cee--eEEeeccCCCCeeEEEeCCC
Q 036510 94 KDHVF-------EDHKSSVNSIDW--APHELGLCLACGSSDGNISVFTARAD-G-GWD--TSRIDQAHPVGVTSVSWAPS 160 (288)
Q Consensus 94 ~~~~~-------~~h~~~v~~l~~--~p~~~~~~l~sg~~d~~i~i~d~~~~-~-~~~--~~~~~~~~~~~v~~i~~~p~ 160 (288)
+ ..+ ..-...++.+++ +|.....++...+.+|.+.-|-+... . ... +.+... -..++..|.....
T Consensus 141 L-~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~-~~sQ~EGCVVDDe 218 (381)
T PF02333_consen 141 L-TDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK-VGSQPEGCVVDDE 218 (381)
T ss_dssp E-EE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETT
T ss_pred c-eEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec-CCCcceEEEEecc
Confidence 1 111 111234677776 33321345666778898888877532 2 121 111111 1234454544433
Q ss_pred CCCCceecccccCCCceeEEeecCCcEEEEEEeCC-ceeeeeeecccc--CCcceEEEEecCCCCCCCcEEEEEe-CCCc
Q 036510 161 TAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNG-IWKMDCFPALQM--HTDWVRDVAWAPNLGLPKSTIASAS-EDGK 236 (288)
Q Consensus 161 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~--h~~~V~~v~~sp~~~~~~~~l~s~s-~D~~ 236 (288)
. ..|..+-++.-|--|+.+.. ....+.+....+ ...-|..+..-..... ..||+..| .+++
T Consensus 219 ~--------------g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g-~gYLivSsQG~~s 283 (381)
T PF02333_consen 219 T--------------GRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDG-KGYLIVSSQGDNS 283 (381)
T ss_dssp T--------------TEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC--EEEEEEEGGGTE
T ss_pred c--------------CCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCC-CeEEEEEcCCCCe
Confidence 3 56777877654444443321 111122222222 3345777777653211 23555555 5889
Q ss_pred EEEEEeec
Q 036510 237 VIIWTVAR 244 (288)
Q Consensus 237 i~iw~~~~ 244 (288)
..+|+.+.
T Consensus 284 f~Vy~r~~ 291 (381)
T PF02333_consen 284 FAVYDREG 291 (381)
T ss_dssp EEEEESST
T ss_pred EEEEecCC
Confidence 99999764
No 467
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=24.94 E-value=4.8e+02 Score=22.93 Aligned_cols=54 Identities=19% Similarity=0.291 Sum_probs=28.0
Q ss_pred eEEEEecCCCCCCEEEEee-----------CCC-cEEEeecCCCC-ceEEeEEeecCCCceeEEEeccC
Q 036510 58 VWEVAWAHPKFGSILASCS-----------FDG-TVIIWKEGNSN-EWIKDHVFEDHKSSVNSIDWAPH 113 (288)
Q Consensus 58 v~~~~~~~~~~~~~l~s~s-----------~d~-~v~iwd~~~~~-~~~~~~~~~~h~~~v~~l~~~p~ 113 (288)
...++|.+ +|+++++-. ..+ .|.+++-.++. .......+.........+.+.++
T Consensus 16 P~~ia~d~--~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~ 82 (367)
T TIGR02604 16 PIAVCFDE--RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVG 82 (367)
T ss_pred CceeeECC--CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecC
Confidence 35677754 367666642 223 67676544321 12122334333345678888876
No 468
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=24.39 E-value=5.2e+02 Score=23.18 Aligned_cols=35 Identities=29% Similarity=0.515 Sum_probs=22.4
Q ss_pred CCcceEEEEecCCCCCCCcEEEEEe---CCC-cEEEEEeecC
Q 036510 208 HTDWVRDVAWAPNLGLPKSTIASAS---EDG-KVIIWTVARE 245 (288)
Q Consensus 208 h~~~V~~v~~sp~~~~~~~~l~s~s---~D~-~i~iw~~~~~ 245 (288)
-..++.-+.|||.. +.+|+-|- .|. .-|||-++..
T Consensus 186 ~~~wlgH~~fsP~d---p~li~fCHEGpw~~Vd~RiW~i~~d 224 (386)
T PF14583_consen 186 DTDWLGHVQFSPTD---PTLIMFCHEGPWDLVDQRIWTINTD 224 (386)
T ss_dssp ESS-EEEEEEETTE---EEEEEEEE-S-TTTSS-SEEEEETT
T ss_pred cCccccCcccCCCC---CCEEEEeccCCcceeceEEEEEEcC
Confidence 34577888999973 56666653 355 3589988753
No 469
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=24.07 E-value=4.4e+02 Score=22.22 Aligned_cols=112 Identities=8% Similarity=0.016 Sum_probs=57.2
Q ss_pred cceEEEEEcCCCCEEEEeeCCC--cEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCC
Q 036510 12 DTVHDVAMDYYGKRLATASSDY--SIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNS 89 (288)
Q Consensus 12 ~~v~~~~~s~~g~~l~s~~~d~--~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~ 89 (288)
...+++.|..+|.++-|.|.-| .++.+|+..+.......+.. ...-=+++... +.+..-.-.++..-+||..+.
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~-~~FgEGit~~~---d~l~qLTWk~~~~f~yd~~tl 120 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPP-RYFGEGITILG---DKLYQLTWKEGTGFVYDPNTL 120 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TT-T--EEEEEEET---TEEEEEESSSSEEEEEETTTT
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCc-cccceeEEEEC---CEEEEEEecCCeEEEEccccc
Confidence 4556788877888888888765 57777765432211222221 11112233221 234444455678888998654
Q ss_pred CceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecC
Q 036510 90 NEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARA 135 (288)
Q Consensus 90 ~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~ 135 (288)
. ....+. ..+.-+.+.. + +..|........|+++|..+
T Consensus 121 ~---~~~~~~-y~~EGWGLt~--d--g~~Li~SDGS~~L~~~dP~~ 158 (264)
T PF05096_consen 121 K---KIGTFP-YPGEGWGLTS--D--GKRLIMSDGSSRLYFLDPET 158 (264)
T ss_dssp E---EEEEEE--SSS--EEEE--C--SSCEEEE-SSSEEEEE-TTT
T ss_pred e---EEEEEe-cCCcceEEEc--C--CCEEEEECCccceEEECCcc
Confidence 3 333342 2346677762 3 33455554566788888754
No 470
>PF08954 DUF1900: Domain of unknown function (DUF1900); InterPro: IPR015049 This domain is predominantly found in the structural protein coronin, and is duplicated in some sequences. It has no known function []. ; PDB: 2B4E_A 2AQ5_A.
Probab=23.12 E-value=3.1e+02 Score=20.46 Aligned_cols=51 Identities=6% Similarity=0.158 Sum_probs=23.3
Q ss_pred EEecCCCCCCEEEEeeCCCcEEEeecCCCCceE-EeEEeecCCCceeEEEeccC
Q 036510 61 VAWAHPKFGSILASCSFDGTVIIWKEGNSNEWI-KDHVFEDHKSSVNSIDWAPH 113 (288)
Q Consensus 61 ~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~-~~~~~~~h~~~v~~l~~~p~ 113 (288)
--|.++ .+-++++|-.|++|+.+.+....... ....+ ....+..++++-|.
T Consensus 16 P~yD~d-t~llyl~gKGD~~ir~yEv~~~~p~l~~l~~~-~s~~~~~G~~~lPK 67 (136)
T PF08954_consen 16 PFYDED-TNLLYLAGKGDGNIRYYEVSDESPYLHYLSEY-RSPEPQKGFAFLPK 67 (136)
T ss_dssp EEE-TT-T-EEEEEETT-S-EEEEEE-SSTTSEEEEEEE---SS--SEEEE--G
T ss_pred eeEcCC-CCEEEEEeccCcEEEEEEEcCCCCceEEcccc-ccCCCeEeeEecCc
Confidence 344443 24556677789999999986653222 22222 24456677777774
No 471
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=23.02 E-value=7.1e+02 Score=24.23 Aligned_cols=76 Identities=14% Similarity=0.147 Sum_probs=0.0
Q ss_pred eEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecC---------CCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcE
Q 036510 212 VRDVAWAPNLGLPKSTIASASEDGKVIIWTVARE---------GDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNV 282 (288)
Q Consensus 212 V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~---------~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v 282 (288)
|.|+...........+++.-...++-++-.+... ........--.....|..+.|.++++.+++.-.+|.|
T Consensus 74 V~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~~~~~~~~~~~e~~~~~~~kl~~kvv~Ik~~~~~~~I~vvl~nG~i 153 (670)
T PF10395_consen 74 VECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKVGSTEDGTVNSETTNEFELKLDDKVVGIKFSSDGKIIYVVLENGSI 153 (670)
T ss_pred EEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccCccccccccCccccceEEEEcccceEEEEEecCCCEEEEEEcCCcE
Q ss_pred EEeEc
Q 036510 283 TLWEE 287 (288)
Q Consensus 283 ~~w~~ 287 (288)
++||.
T Consensus 154 ~~~d~ 158 (670)
T PF10395_consen 154 QIYDF 158 (670)
T ss_pred EEEec
No 472
>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E.
Probab=22.31 E-value=2.2e+02 Score=18.04 Aligned_cols=29 Identities=10% Similarity=0.119 Sum_probs=19.5
Q ss_pred ceeEEeecCCcEEEEEEeCCceeeeeeec
Q 036510 176 QKLCSGGCDNTVKVWKLYNGIWKMDCFPA 204 (288)
Q Consensus 176 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 204 (288)
+.++.-+.++.|+||........++++..
T Consensus 30 N~Fav~~e~~~iKIfkyd~~tNei~L~KE 58 (63)
T PF14157_consen 30 NHFAVVDEDGQIKIFKYDEDTNEITLKKE 58 (63)
T ss_dssp TEEEEE-ETTEEEEEEEETTTTEEEEEEE
T ss_pred CEEEEEecCCeEEEEEeCCCCCeEEEEEe
Confidence 45666688999999988776555555443
No 473
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=22.14 E-value=6.2e+02 Score=23.27 Aligned_cols=56 Identities=13% Similarity=0.058 Sum_probs=34.7
Q ss_pred CcEEEEEeCCCcEEEEEeecCC-Cc--ccceEeeccccCeEEEEeecCC-CEEEEEeCCCc
Q 036510 225 KSTIASASEDGKVIIWTVAREG-DQ--WEGKVLHDFKTPVYRVSWSLTG-NILAVADGNNN 281 (288)
Q Consensus 225 ~~~l~s~s~D~~i~iw~~~~~~-~~--~~~~~~~~~~~~i~~~~~spdg-~~l~s~~~d~~ 281 (288)
+++|+++-..+.|....+.... .. .+..++.. .+.|..|.-.||| .+.+..+..|.
T Consensus 369 g~llv~~L~~~~l~r~~l~~~~~~v~~~~~~~~~~-~~RiRdv~~~pDg~~iy~~td~~g~ 428 (454)
T TIGR03606 369 NSLLIPSLKRGVIYRIKLDPDYSTVYGDAVPMFKT-NNRYRDVIASPDGNVLYVATDNFGN 428 (454)
T ss_pred CCEEEEEcCCCeEEEEEecCCcceecceeEEeecC-CCeeEEEEECCCCCEEEEEEcCCCc
Confidence 5678777778888777775331 01 11223333 4689999999998 55554544443
No 474
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=21.25 E-value=5.4e+02 Score=22.18 Aligned_cols=16 Identities=19% Similarity=0.478 Sum_probs=9.8
Q ss_pred CcEEEeecCCCCceEEe
Q 036510 79 GTVIIWKEGNSNEWIKD 95 (288)
Q Consensus 79 ~~v~iwd~~~~~~~~~~ 95 (288)
..+.+||..+ ++|...
T Consensus 168 ~~v~~YDp~t-~~W~~~ 183 (346)
T TIGR03547 168 KNVLSYDPST-NQWRNL 183 (346)
T ss_pred ceEEEEECCC-CceeEC
Confidence 4677888765 445443
No 475
>PLN02153 epithiospecifier protein
Probab=20.53 E-value=5.6e+02 Score=22.09 Aligned_cols=15 Identities=13% Similarity=0.554 Sum_probs=9.1
Q ss_pred CcEEEeecCCCCceEE
Q 036510 79 GTVIIWKEGNSNEWIK 94 (288)
Q Consensus 79 ~~v~iwd~~~~~~~~~ 94 (288)
..+.+||+.+ ..|..
T Consensus 217 ~~v~~yd~~~-~~W~~ 231 (341)
T PLN02153 217 NAVQFFDPAS-GKWTE 231 (341)
T ss_pred CceEEEEcCC-CcEEe
Confidence 4577888764 44544
No 476
>KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=20.37 E-value=83 Score=27.84 Aligned_cols=22 Identities=9% Similarity=0.323 Sum_probs=19.3
Q ss_pred CcEEEEEeCCCcEEEEEeecCC
Q 036510 225 KSTIASASEDGKVIIWTVAREG 246 (288)
Q Consensus 225 ~~~l~s~s~D~~i~iw~~~~~~ 246 (288)
+..||||+.|+.+.+||++..+
T Consensus 341 Gy~lvtgGTDnHlvLvDLr~~G 362 (477)
T KOG2467|consen 341 GYKLVTGGTDNHLVLVDLRPKG 362 (477)
T ss_pred CceEecCCccceEEEEeccccC
Confidence 5679999999999999998653
No 477
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=20.14 E-value=6e+02 Score=22.34 Aligned_cols=10 Identities=10% Similarity=0.245 Sum_probs=7.0
Q ss_pred CCEEEEeeCC
Q 036510 69 GSILASCSFD 78 (288)
Q Consensus 69 ~~~l~s~s~d 78 (288)
+.+++.|+.+
T Consensus 140 ~~IYv~GG~~ 149 (376)
T PRK14131 140 GKAYITGGVN 149 (376)
T ss_pred CEEEEECCCC
Confidence 6777777754
No 478
>TIGR00189 tesB acyl-CoA thioesterase II. Subunit: homotetramer.
Probab=20.11 E-value=3.7e+02 Score=22.29 Aligned_cols=55 Identities=13% Similarity=0.274 Sum_probs=33.0
Q ss_pred EEEeeCCCcEEEeecCCCCceEEeEEeec----CCCceeEEEeccCCCCeEEEEEeCCCcE
Q 036510 72 LASCSFDGTVIIWKEGNSNEWIKDHVFED----HKSSVNSIDWAPHELGLCLACGSSDGNI 128 (288)
Q Consensus 72 l~s~s~d~~v~iwd~~~~~~~~~~~~~~~----h~~~v~~l~~~p~~~~~~l~sg~~d~~i 128 (288)
...+|.|.+|.+.+......|........ ....+.+--|+.+ |.++|+..+++.+
T Consensus 212 ~~~aSldhtv~fh~~~~~~~W~l~~~~s~~~~~Grg~~~~~l~d~~--G~lvAs~~Qe~l~ 270 (271)
T TIGR00189 212 SMAASLDHSIWFHRPFRADDWLLYKCSSPSASGSRGLVEGKIFTRD--GVLIASTVQEGLV 270 (271)
T ss_pred cEEEeeeeeEEEeCCCCCCeeEEEEEEeccccCCceEEEEEEECCC--CCEEEEEEeeeec
Confidence 45578899999887644566765543321 2222334445544 7778888777654
Done!