BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036511
         (91 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3RKI|A Chain A, Structural Basis For Immunization With Post-Fusion Rsv F
           To Elicit High Neutralizing Antibody Titers
 pdb|3RKI|B Chain B, Structural Basis For Immunization With Post-Fusion Rsv F
           To Elicit High Neutralizing Antibody Titers
 pdb|3RKI|C Chain C, Structural Basis For Immunization With Post-Fusion Rsv F
           To Elicit High Neutralizing Antibody Titers
          Length = 528

 Score = 26.6 bits (57), Expect = 4.3,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 26/53 (49%)

Query: 33  PQHESCSPIGNLVRLNAVACLSTSLHVNVLNLIKLDVPIDSSLLLNHCDVSST 85
           PQ E+C    N V  + +  L+    VN+ N+   +   D  ++ +  DVSS+
Sbjct: 344 PQAETCKVQSNRVFCDTMNSLTLPSEVNLCNVDIFNPKYDCKIMTSKTDVSSS 396


>pdb|3RRR|B Chain B, Structure Of The Rsv F Protein In The Post-Fusion
           Conformation
 pdb|3RRR|D Chain D, Structure Of The Rsv F Protein In The Post-Fusion
           Conformation
 pdb|3RRR|F Chain F, Structure Of The Rsv F Protein In The Post-Fusion
           Conformation
 pdb|3RRR|H Chain H, Structure Of The Rsv F Protein In The Post-Fusion
           Conformation
 pdb|3RRR|L Chain L, Structure Of The Rsv F Protein In The Post-Fusion
           Conformation
 pdb|3RRR|N Chain N, Structure Of The Rsv F Protein In The Post-Fusion
           Conformation
 pdb|3RRT|B Chain B, Structure Of The Rsv F Protein In The Post-Fusion
           Conformation
 pdb|3RRT|D Chain D, Structure Of The Rsv F Protein In The Post-Fusion
           Conformation
 pdb|3RRT|F Chain F, Structure Of The Rsv F Protein In The Post-Fusion
           Conformation
          Length = 374

 Score = 26.2 bits (56), Expect = 5.1,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 26/53 (49%)

Query: 33  PQHESCSPIGNLVRLNAVACLSTSLHVNVLNLIKLDVPIDSSLLLNHCDVSST 85
           PQ E+C    N V  + +  L+    VN+ N+   +   D  ++ +  DVSS+
Sbjct: 207 PQAETCKVQSNRVFCDTMNSLTLPSEVNLCNVDIFNPKYDCKIMTSKTDVSSS 259


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.135    0.413 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,475,201
Number of Sequences: 62578
Number of extensions: 73582
Number of successful extensions: 129
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 127
Number of HSP's gapped (non-prelim): 2
length of query: 91
length of database: 14,973,337
effective HSP length: 58
effective length of query: 33
effective length of database: 11,343,813
effective search space: 374345829
effective search space used: 374345829
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)