BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>036513
MERFLFRVKALLHTKSSGCTFWMGNLKHKDLMGQVVSSQAYVDDLSNNVEEDLEGAVHED
QPISPASEH

High Scoring Gene Products

Symbol, full name Information P value
AT4G14970 protein from Arabidopsis thaliana 6.5e-15
FANCD2
Uncharacterized protein
protein from Sus scrofa 0.00035
fancd2
Fanconi anemia, complementation group D2
gene_product from Danio rerio 0.00052
FANCD2
Fanconi anemia group D2 protein
protein from Homo sapiens 0.00075
FANCD2
Uncharacterized protein
protein from Bos taurus 0.00094

The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  036513
        (69 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2129545 - symbol:AT4G14970 "AT4G14970" species...   204  6.5e-15   1
UNIPROTKB|E1BS46 - symbol:FANCD2 "Uncharacterized protein...   108  0.00010   1
UNIPROTKB|F1SQC5 - symbol:FANCD2 "Uncharacterized protein...   103  0.00035   1
ZFIN|ZDB-GENE-040116-5 - symbol:fancd2 "Fanconi anemia, c...   102  0.00052   1
UNIPROTKB|Q9BXW9 - symbol:FANCD2 "Fanconi anemia group D2...   100  0.00075   1
UNIPROTKB|E1BE83 - symbol:FANCD2 "Uncharacterized protein...    99  0.00094   1


>TAIR|locus:2129545 [details] [associations]
            symbol:AT4G14970 "AT4G14970" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0009507 "chloroplast" evidence=IDA] [GO:0007062
            "sister chromatid cohesion" evidence=RCA] [GO:0007129 "synapsis"
            evidence=RCA] [GO:0007131 "reciprocal meiotic recombination"
            evidence=RCA] [GO:0010332 "response to gamma radiation"
            evidence=RCA] [GO:0032204 "regulation of telomere maintenance"
            evidence=RCA] [GO:0032504 "multicellular organism reproduction"
            evidence=RCA] [GO:0033044 "regulation of chromosome organization"
            evidence=RCA] [GO:0042138 "meiotic DNA double-strand break
            formation" evidence=RCA] [GO:0043247 "telomere maintenance in
            response to DNA damage" evidence=RCA] [GO:0045132 "meiotic
            chromosome segregation" evidence=RCA] GO:GO:0009507 EMBL:CP002687
            KO:K10891 IPI:IPI00531934 RefSeq:NP_193233.5 UniGene:At.54323
            ProteinModelPortal:F4JIJ1 PRIDE:F4JIJ1 EnsemblPlants:AT4G14970.1
            GeneID:827156 KEGG:ath:AT4G14970 OMA:LKKEIIG Uniprot:F4JIJ1
        Length = 1489

 Score = 204 (76.9 bits), Expect = 6.5e-15, P = 6.5e-15
 Identities = 40/69 (57%), Positives = 52/69 (75%)

Query:     1 MERFLFRVKALLHTKSSGCTFWMGNLKHKDLMGQVVSSQAYVDDLSNNVEEDLEGA---V 57
             +ERFLF VKALLH  S G  FWMG+LKHKDL GQ+VSSQAY+D+ ++ VEE + G    +
Sbjct:  1421 LERFLFHVKALLHRTSGGSNFWMGSLKHKDLRGQIVSSQAYIDNEADEVEETMSGEEEPM 1480

Query:    58 HEDQ-PISP 65
              ED+ P++P
Sbjct:  1481 QEDELPLTP 1489


>UNIPROTKB|E1BS46 [details] [associations]
            symbol:FANCD2 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000793 "condensed chromosome" evidence=IEA]
            [GO:0006974 "response to DNA damage stimulus" evidence=IEA]
            [GO:0007129 "synapsis" evidence=IEA] [GO:0007276 "gamete
            generation" evidence=IEA] [GO:0010332 "response to gamma radiation"
            evidence=IEA] GO:GO:0006974 GO:GO:0010332 GO:GO:0000793
            GO:GO:0007129 OMA:HIQDDMH GeneTree:ENSGT00390000016970
            EMBL:AADN02056463 EMBL:AADN02056464 IPI:IPI00582495
            Ensembl:ENSGALT00000005907 ArrayExpress:E1BS46 Uniprot:E1BS46
        Length = 1439

 Score = 108 (43.1 bits), Expect = 0.00010, P = 0.00010
 Identities = 24/63 (38%), Positives = 38/63 (60%)

Query:     1 MERFLFRVKALLHTKSSGCTFWMGNLKHKDLMGQVVSSQAYV---DDLSNNVEEDLEGAV 57
             +E+F++RVKA+L        FW+G LK++DL G+ + SQA     +D +   EED E + 
Sbjct:  1364 LEQFVYRVKAMLAFNHCQEAFWVGVLKNRDLQGEEILSQASAAPEEDSAEGSEEDTEDSA 1423

Query:    58 HED 60
              E+
Sbjct:  1424 AEE 1426


>UNIPROTKB|F1SQC5 [details] [associations]
            symbol:FANCD2 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0010332 "response to gamma radiation" evidence=IEA]
            [GO:0007276 "gamete generation" evidence=IEA] [GO:0007129
            "synapsis" evidence=IEA] [GO:0006974 "response to DNA damage
            stimulus" evidence=IEA] [GO:0000793 "condensed chromosome"
            evidence=IEA] InterPro:IPR016024 SUPFAM:SSF48371 GO:GO:0006974
            GO:GO:0010332 GO:GO:0000793 GO:GO:0007276 GO:GO:0007129 OMA:HIQDDMH
            GeneTree:ENSGT00390000016970 EMBL:CU464019
            Ensembl:ENSSSCT00000012655 Uniprot:F1SQC5
        Length = 1451

 Score = 103 (41.3 bits), Expect = 0.00035, P = 0.00035
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query:     1 MERFLFRVKALLHTKSSGCTFWMGNLKHKDLMGQVVSSQAYVDDLSNNVEEDLEGAVHED 60
             +E  + RVKA+L   S    FW+GNLK++DL G+ + SQ   +  +   EED    V + 
Sbjct:  1365 LELLVCRVKAMLTLNSCREAFWLGNLKNRDLQGEEIISQNSQESTAEESEEDTASQVSKS 1424

Query:    61 Q 61
             +
Sbjct:  1425 K 1425


>ZFIN|ZDB-GENE-040116-5 [details] [associations]
            symbol:fancd2 "Fanconi anemia, complementation group
            D2" species:7955 "Danio rerio" [GO:0043066 "negative regulation of
            apoptotic process" evidence=IGI;IMP] ZFIN:ZDB-GENE-040116-5
            GO:GO:0043066 GeneTree:ENSGT00390000016970 EMBL:BX957236
            EMBL:CU694444 IPI:IPI00998139 Ensembl:ENSDART00000125089
            ArrayExpress:E7F616 Bgee:E7F616 Uniprot:E7F616
        Length = 1659

 Score = 102 (41.0 bits), Expect = 0.00052, P = 0.00052
 Identities = 23/69 (33%), Positives = 42/69 (60%)

Query:     1 MERFLFRVKALLHTKSSGCTFWMGNLKHKDLMGQ-VVSSQAYVDDLSNNVEEDLEGAVHE 59
             +E+F++RVKA+L        FW+GNLK++DL G+ ++S ++   D     EE+ E +  +
Sbjct:  1366 LEQFVYRVKAMLTLNHCQEAFWLGNLKNRDLKGEEILSQRSQAAD-----EEEEESSQLQ 1420

Query:    60 DQPISPASE 68
              +  +PA +
Sbjct:  1421 SEAETPADQ 1429


>UNIPROTKB|Q9BXW9 [details] [associations]
            symbol:FANCD2 "Fanconi anemia group D2 protein"
            species:9606 "Homo sapiens" [GO:0000793 "condensed chromosome"
            evidence=IEA] [GO:0007129 "synapsis" evidence=IEA] [GO:0007276
            "gamete generation" evidence=IEA] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0010332 "response to gamma radiation"
            evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006281
            "DNA repair" evidence=TAS] Reactome:REACT_216 GO:GO:0005654
            GO:GO:0006281 GO:GO:0010332 GO:GO:0000793
            Pathway_Interaction_DB:bard1pathway Orphanet:84 GO:GO:0007276
            GO:GO:0007129 EMBL:AF230336 EMBL:AF273251 EMBL:AF273222
            EMBL:AF273223 EMBL:AF273227 EMBL:AF273231 EMBL:AF273235
            EMBL:AF273243 EMBL:AF273241 EMBL:AF273239 EMBL:AF273245
            EMBL:AF273246 EMBL:AF273247 EMBL:AF273248 EMBL:AF273249
            EMBL:AF273250 EMBL:AF273236 EMBL:AF273237 EMBL:AF273238
            EMBL:AF273224 EMBL:AF273226 EMBL:AF273228 EMBL:AF273230
            EMBL:AF273232 EMBL:AF273234 EMBL:AF273240 EMBL:AF273242
            EMBL:AF273244 EMBL:AF273233 EMBL:AF273229 EMBL:AF273225
            EMBL:AF340183 EMBL:DQ341263 EMBL:BC013582 EMBL:AK022613
            EMBL:AL832427 IPI:IPI00075081 IPI:IPI00604399 IPI:IPI00604576
            IPI:IPI00604753 RefSeq:NP_001018125.1 RefSeq:NP_149075.2
            UniGene:Hs.208388 ProteinModelPortal:Q9BXW9 SMR:Q9BXW9
            DIP:DIP-27606N DIP:DIP-29382N IntAct:Q9BXW9 MINT:MINT-190855
            STRING:Q9BXW9 PhosphoSite:Q9BXW9 DMDM:67461071 PaxDb:Q9BXW9
            PRIDE:Q9BXW9 DNASU:2177 Ensembl:ENST00000287647
            Ensembl:ENST00000383806 Ensembl:ENST00000383807
            Ensembl:ENST00000419585 Ensembl:ENST00000431693 GeneID:2177
            KEGG:hsa:2177 UCSC:uc003buv.3 UCSC:uc003buw.3 UCSC:uc003bux.1
            CTD:2177 GeneCards:GC03P010068 H-InvDB:HIX0003045 HGNC:HGNC:3585
            HPA:CAB016117 MIM:227646 MIM:613984 neXtProt:NX_Q9BXW9
            PharmGKB:PA27999 eggNOG:NOG305332 HOGENOM:HOG000060189
            HOVERGEN:HBG060904 InParanoid:Q9BXW9 KO:K10891 OMA:HIQDDMH
            OrthoDB:EOG45QHCC PhylomeDB:Q9BXW9 ChiTaRS:FANCD2 GenomeRNAi:2177
            NextBio:8791 ArrayExpress:Q9BXW9 Bgee:Q9BXW9 CleanEx:HS_FANCD2
            Genevestigator:Q9BXW9 GermOnline:ENSG00000144554 Uniprot:Q9BXW9
        Length = 1471

 Score = 100 (40.3 bits), Expect = 0.00075, P = 0.00075
 Identities = 19/53 (35%), Positives = 33/53 (62%)

Query:     1 MERFLFRVKALLHTKSSGCTFWMGNLKHKDLMGQVVSSQAYVDDLSNNVEEDL 53
             +E  + RVKA+L   +    FW+GNLK++DL G+ + SQ   +  ++  E+D+
Sbjct:  1364 LELLVCRVKAMLTLNNCREAFWLGNLKNRDLQGEEIKSQNSQESTADESEDDM 1416


>UNIPROTKB|E1BE83 [details] [associations]
            symbol:FANCD2 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0010332 "response to gamma radiation" evidence=IEA]
            [GO:0007276 "gamete generation" evidence=IEA] [GO:0007129
            "synapsis" evidence=IEA] [GO:0006974 "response to DNA damage
            stimulus" evidence=IEA] [GO:0000793 "condensed chromosome"
            evidence=IEA] GO:GO:0006974 GO:GO:0010332 GO:GO:0000793
            GO:GO:0007276 GO:GO:0007129 OMA:HIQDDMH
            GeneTree:ENSGT00390000016970 EMBL:DAAA02053753 EMBL:DAAA02053754
            EMBL:DAAA02053755 IPI:IPI00710601 Ensembl:ENSBTAT00000013299
            Uniprot:E1BE83
        Length = 1449

 Score = 99 (39.9 bits), Expect = 0.00094, P = 0.00094
 Identities = 23/63 (36%), Positives = 35/63 (55%)

Query:     1 MERFLFRVKALLHTKSSGCTFWMGNLKHKDLMGQVVSSQAYVDDLSNNVEED--LEGAVH 58
             +E  + RVKA+L   +    FW+GNLK++DL G+ + SQ   +  +N  E D   +GA  
Sbjct:  1363 LELLVCRVKAMLILNNCREAFWLGNLKNRDLQGEEIISQNSQESTANESEGDTSFQGAEQ 1422

Query:    59 EDQ 61
               Q
Sbjct:  1423 TSQ 1425


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.130   0.384    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       69        69   0.00091  102 3  11 22  0.48    28
                                                     29  0.39    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  540 (57 KB)
  Total size of DFA:  97 KB (2068 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.69u 0.10s 9.79t   Elapsed:  00:00:01
  Total cpu time:  9.69u 0.10s 9.79t   Elapsed:  00:00:01
  Start:  Thu May  9 16:44:49 2013   End:  Thu May  9 16:44:50 2013

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