BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036513
         (69 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9BXW9|FACD2_HUMAN Fanconi anemia group D2 protein OS=Homo sapiens GN=FANCD2 PE=1 SV=1
          Length = 1471

 Score = 42.0 bits (97), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 33/53 (62%)

Query: 1    MERFLFRVKALLHTKSSGCTFWMGNLKHKDLMGQVVSSQAYVDDLSNNVEEDL 53
            +E  + RVKA+L   +    FW+GNLK++DL G+ + SQ   +  ++  E+D+
Sbjct: 1364 LELLVCRVKAMLTLNNCREAFWLGNLKNRDLQGEEIKSQNSQESTADESEDDM 1416


>sp|Q6IV68|FACD2_RAT Fanconi anemia group D2 protein homolog OS=Rattus norvegicus
            GN=Fancd2 PE=2 SV=2
          Length = 1451

 Score = 36.2 bits (82), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 2/65 (3%)

Query: 1    MERFLFRVKALLHTKSSGCTFWMGNLKHKDLMGQVVSSQ--AYVDDLSNNVEEDLEGAVH 58
            +E  + RVKA+L   +    FW+G LK++DL G+ + SQ  +  ++ S + E+ +   V 
Sbjct: 1364 LELLVCRVKAMLVLNNCREAFWLGTLKNRDLQGEEIISQHPSSPENTSEDSEDGMTSYVS 1423

Query: 59   EDQPI 63
             ++ I
Sbjct: 1424 RNRAI 1428


>sp|Q80V62|FACD2_MOUSE Fanconi anemia group D2 protein homolog OS=Mus musculus GN=Fancd2
            PE=1 SV=2
          Length = 1450

 Score = 36.2 bits (82), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 25/39 (64%)

Query: 1    MERFLFRVKALLHTKSSGCTFWMGNLKHKDLMGQVVSSQ 39
            +E  + RVKA+L   +    FW+G LK++DL G+ + SQ
Sbjct: 1362 LELLVCRVKAMLVLNNCREAFWLGTLKNRDLQGEEIISQ 1400


>sp|P14713|PHYB_ARATH Phytochrome B OS=Arabidopsis thaliana GN=PHYB PE=1 SV=1
          Length = 1172

 Score = 29.3 bits (64), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 14/44 (31%), Positives = 23/44 (52%)

Query: 22  WMGNLKHKDLMGQVVSSQAYVDDLSNNVEEDLEGAVHEDQPISP 65
           ++ N+     +GQ V+SQ  V D   N++ D +  VH   P+ P
Sbjct: 756 YLNNIVGVCFVGQDVTSQKIVMDKFINIQGDYKAIVHSPNPLIP 799


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.316    0.130    0.384 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,740,827
Number of Sequences: 539616
Number of extensions: 770205
Number of successful extensions: 1882
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1878
Number of HSP's gapped (non-prelim): 4
length of query: 69
length of database: 191,569,459
effective HSP length: 41
effective length of query: 28
effective length of database: 169,445,203
effective search space: 4744465684
effective search space used: 4744465684
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)