Query 036513
Match_columns 69
No_of_seqs 49 out of 51
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 03:55:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036513.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036513hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s4w_B Protein FACD2, fanconi 99.9 7.5E-24 2.6E-28 179.9 -1.1 50 1-50 1270-1319(1323)
2 1iq5_B Ca2+/calmodulin depende 33.6 23 0.00079 18.2 1.6 14 4-17 9-22 (27)
3 1ckk_B Camkk, protein (RAT Ca2 33.5 14 0.00048 18.9 0.8 14 4-17 9-22 (26)
4 1oy3_D Transcription factor in 31.0 14 0.00047 23.0 0.6 20 25-44 250-269 (282)
5 1y6u_A XIS, excisionase from t 30.8 35 0.0012 19.8 2.3 19 8-26 33-52 (70)
6 1ud0_A HSC70, 70 kDa heat-shoc 28.5 15 0.00051 21.9 0.4 13 1-13 9-21 (113)
7 3lof_A Heat shock 70 kDa prote 28.0 15 0.00052 22.1 0.4 13 1-13 14-26 (113)
8 3ubu_A Agglucetin subunit alph 26.1 39 0.0013 19.1 2.0 20 8-27 53-72 (131)
9 2p32_A Heat shock 70 kDa prote 25.2 18 0.00063 22.1 0.4 14 1-14 23-36 (120)
10 2y6t_E Ecotin, chymotrypsinoge 23.7 25 0.00086 23.8 0.9 18 16-33 54-71 (148)
11 3vpp_A C-type lectin domain fa 23.3 47 0.0016 19.0 1.9 17 10-26 53-69 (132)
12 2ca6_A RAN GTPase-activating p 22.5 23 0.00079 24.0 0.5 12 25-36 304-315 (386)
13 1h8u_A MBP, eosinophil granule 22.1 48 0.0016 18.6 1.8 17 9-26 41-57 (117)
14 2rre_A NVL2, putative uncharac 21.8 48 0.0016 20.5 1.8 20 3-22 16-35 (78)
15 3gpr_D Rhodocetin subunit delt 20.6 48 0.0016 18.7 1.6 19 8-26 50-68 (124)
No 1
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=99.86 E-value=7.5e-24 Score=179.86 Aligned_cols=50 Identities=36% Similarity=0.571 Sum_probs=29.5
Q ss_pred CchhhhhhHHHHhhCCCcceeeecccccCCCCCcEeeeccccCCCCCcch
Q 036513 1 MERFLFRVKALLHTKSSGCTFWMGNLKHKDLMGQVVSSQAYVDDLSNNVE 50 (69)
Q Consensus 1 LE~fvfrVKalL~~n~c~~AFwmGNLKnkDL~G~~I~SQ~~~~d~~d~~e 50 (69)
||+|||||||||++|+|++||||||||||||+|++|+||.|.+.+++++|
T Consensus 1270 lE~lv~rVKamL~~N~C~~AFw~GnLKnrdL~GeeI~Sq~~~~~~~~~~~ 1319 (1323)
T 3s4w_B 1270 LELLVCRVKAMLVLNNCREAFWLGTLKNRDLQGEEIISQDPSSSESNAED 1319 (1323)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHTSCC--------------------
T ss_pred HHHHHHHHHHHHHHCChhhhhhhcccccCCCCCceeecCCCCCCCCcccc
Confidence 69999999999999999999999999999999999999996554444443
No 2
>1iq5_B Ca2+/calmodulin dependent kinase kinase; EF-hand, protein-peptide complex, metal binding protein/protein binding complex; 1.80A {Xenopus laevis}
Probab=33.55 E-value=23 Score=18.24 Aligned_cols=14 Identities=43% Similarity=0.335 Sum_probs=10.8
Q ss_pred hhhhhHHHHhhCCC
Q 036513 4 FLFRVKALLHTKSS 17 (69)
Q Consensus 4 fvfrVKalL~~n~c 17 (69)
-|.+||+||...+-
T Consensus 9 Tvilvk~Ml~~~sf 22 (27)
T 1iq5_B 9 TLILVKAMGHRKRF 22 (27)
T ss_dssp HHHHHHHHHHHTSS
T ss_pred HHHHHHHHHhcccc
Confidence 37899999987543
No 3
>1ckk_B Camkk, protein (RAT Ca2+/calmodulin dependent protein kinase); complex (calmodulin/peptide), calmodulin-peptide complex; NMR {Rattus norvegicus}
Probab=33.46 E-value=14 Score=18.91 Aligned_cols=14 Identities=29% Similarity=0.375 Sum_probs=10.4
Q ss_pred hhhhhHHHHhhCCC
Q 036513 4 FLFRVKALLHTKSS 17 (69)
Q Consensus 4 fvfrVKalL~~n~c 17 (69)
-|.+||+||...+-
T Consensus 9 Tvilvk~Mlr~~sf 22 (26)
T 1ckk_B 9 TVILVKSMLRKRSF 22 (26)
T ss_dssp HHHHHHHHCSSSCC
T ss_pred HHHHHHHHhhcccc
Confidence 36899999976543
No 4
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=31.05 E-value=14 Score=22.99 Aligned_cols=20 Identities=10% Similarity=-0.203 Sum_probs=3.5
Q ss_pred ccccCCCCCcEeeeccccCC
Q 036513 25 NLKHKDLMGQVVSSQAYVDD 44 (69)
Q Consensus 25 NLKnkDL~G~~I~SQ~~~~d 44 (69)
++..+|-.|..-.+-+..++
T Consensus 250 ~~~~~~~~g~tpl~~a~~~~ 269 (282)
T 1oy3_D 250 PEPEDGGDKLSPCSSSGSDS 269 (282)
T ss_dssp CCCCCC--------------
T ss_pred CcCcCCCcccccccccCCcc
Confidence 45566777776665554333
No 5
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=30.79 E-value=35 Score=19.77 Aligned_cols=19 Identities=16% Similarity=0.246 Sum_probs=14.6
Q ss_pred hHHHHhhC-CCcceeeeccc
Q 036513 8 VKALLHTK-SSGCTFWMGNL 26 (69)
Q Consensus 8 VKalL~~n-~c~~AFwmGNL 26 (69)
|..|+..+ +|.-++|+||-
T Consensus 33 l~~L~~~~~~~~~~~~iG~~ 52 (70)
T 1y6u_A 33 LRRLAEENKNANWLIMNGNR 52 (70)
T ss_dssp HHHHHHHCTTCSSEEEETTE
T ss_pred HHHHHHcCCCCCcEEEeCCE
Confidence 45567776 78889999983
No 6
>1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus norvegicus} SCOP: a.8.4.1
Probab=28.52 E-value=15 Score=21.90 Aligned_cols=13 Identities=31% Similarity=0.654 Sum_probs=10.3
Q ss_pred CchhhhhhHHHHh
Q 036513 1 MERFLFRVKALLH 13 (69)
Q Consensus 1 LE~fvfrVKalL~ 13 (69)
+|.|||+++..|.
T Consensus 9 aE~~iy~~e~~L~ 21 (113)
T 1ud0_A 9 LESYAFNMKATVE 21 (113)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 4778888888885
No 7
>3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70, PSI-2, prote structure initiative; 2.40A {Homo sapiens} PDB: 2lmg_A
Probab=28.04 E-value=15 Score=22.05 Aligned_cols=13 Identities=23% Similarity=0.623 Sum_probs=10.2
Q ss_pred CchhhhhhHHHHh
Q 036513 1 MERFLFRVKALLH 13 (69)
Q Consensus 1 LE~fvfrVKalL~ 13 (69)
||.|||.++..|.
T Consensus 14 lEs~iy~~e~~l~ 26 (113)
T 3lof_A 14 LESYAFNMKSAVE 26 (113)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 4788888888774
No 8
>3ubu_A Agglucetin subunit alpha-1; platelet inhibiting, agkisacucetin, dimer, toxin, C-type LEC GPIB inhibitor, GPIB binding; 1.91A {Deinagkistrodon acutus}
Probab=26.07 E-value=39 Score=19.14 Aligned_cols=20 Identities=20% Similarity=0.370 Sum_probs=12.2
Q ss_pred hHHHHhhCCCcceeeecccc
Q 036513 8 VKALLHTKSSGCTFWMGNLK 27 (69)
Q Consensus 8 VKalL~~n~c~~AFwmGNLK 27 (69)
|+.++..+.-...||||--.
T Consensus 53 l~~~~~~~~~~~~~WIGl~~ 72 (131)
T 3ubu_A 53 VAQLVSENKQTDNVWLGLKI 72 (131)
T ss_dssp HHHHHHHTTCCSCEEEEEEE
T ss_pred HHHHHHhcCCCCCEEEeEec
Confidence 34455555445589999543
No 9
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans}
Probab=25.25 E-value=18 Score=22.11 Aligned_cols=14 Identities=21% Similarity=0.574 Sum_probs=10.7
Q ss_pred CchhhhhhHHHHhh
Q 036513 1 MERFLFRVKALLHT 14 (69)
Q Consensus 1 LE~fvfrVKalL~~ 14 (69)
||.|||+++..|..
T Consensus 23 aEsliy~~e~~L~e 36 (120)
T 2p32_A 23 LESYAFNLKQTIED 36 (120)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhc
Confidence 47788998888853
No 10
>2y6t_E Ecotin, chymotrypsinogen A; hydrolase-inhibitor complex; 2.74A {Yersinia pseudotuberculosis}
Probab=23.67 E-value=25 Score=23.84 Aligned_cols=18 Identities=28% Similarity=0.429 Sum_probs=16.1
Q ss_pred CCcceeeecccccCCCCC
Q 036513 16 SSGCTFWMGNLKHKDLMG 33 (69)
Q Consensus 16 ~c~~AFwmGNLKnkDL~G 33 (69)
+|-..|..|+|..|+|+|
T Consensus 54 DCN~~~lgG~Leektl~G 71 (148)
T 2y6t_E 54 DCNRHMLGGNLETRTLSG 71 (148)
T ss_dssp CSSCEEEECCEEEEECTT
T ss_pred ccCCceeccEEEEEeecC
Confidence 477779999999999999
No 11
>3vpp_A C-type lectin domain family 9 member A; dendritic cell, C-type lectin-like domain, membrane, immune; 1.64A {Homo sapiens}
Probab=23.28 E-value=47 Score=18.97 Aligned_cols=17 Identities=18% Similarity=0.468 Sum_probs=10.2
Q ss_pred HHHhhCCCcceeeeccc
Q 036513 10 ALLHTKSSGCTFWMGNL 26 (69)
Q Consensus 10 alL~~n~c~~AFwmGNL 26 (69)
.+|....-...||||--
T Consensus 53 ~~~~~~~~~~~~WIGl~ 69 (132)
T 3vpp_A 53 GSLRKIKGSYDYWVGLS 69 (132)
T ss_dssp HHHTTSSSCCEEEEEEE
T ss_pred HHHhccCCCccEEEEec
Confidence 34444344568999943
No 12
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=22.55 E-value=23 Score=23.98 Aligned_cols=12 Identities=25% Similarity=0.329 Sum_probs=5.0
Q ss_pred ccccCCCCCcEe
Q 036513 25 NLKHKDLMGQVV 36 (69)
Q Consensus 25 NLKnkDL~G~~I 36 (69)
+|+.=+|.|-.|
T Consensus 304 ~L~~L~l~~N~l 315 (386)
T 2ca6_A 304 DLLFLELNGNRF 315 (386)
T ss_dssp TCCEEECTTSBS
T ss_pred CceEEEccCCcC
Confidence 344444444333
No 13
>1h8u_A MBP, eosinophil granule major basic protein 1; lectin, eosinophil granule protein, EMBP; 1.8A {Homo sapiens} SCOP: d.169.1.1 PDB: 2brs_A*
Probab=22.12 E-value=48 Score=18.60 Aligned_cols=17 Identities=12% Similarity=0.384 Sum_probs=10.3
Q ss_pred HHHHhhCCCcceeeeccc
Q 036513 9 KALLHTKSSGCTFWMGNL 26 (69)
Q Consensus 9 KalL~~n~c~~AFwmGNL 26 (69)
+.++...+ ...||||--
T Consensus 41 ~~~~~~~~-~~~~WIGl~ 57 (117)
T 1h8u_A 41 QCSVSALN-QGQVWIGGR 57 (117)
T ss_dssp HHHHTTCS-SSEEEEEEE
T ss_pred HHHHhccC-CCCEEEccc
Confidence 34444333 678999964
No 14
>2rre_A NVL2, putative uncharacterized protein; nucleolar localization signal, RNA binding, alternatively SP domain, nuclear protein; NMR {Mus musculus}
Probab=21.79 E-value=48 Score=20.45 Aligned_cols=20 Identities=20% Similarity=0.145 Sum_probs=16.5
Q ss_pred hhhhhhHHHHhhCCCcceee
Q 036513 3 RFLFRVKALLHTKSSGCTFW 22 (69)
Q Consensus 3 ~fvfrVKalL~~n~c~~AFw 22 (69)
+|+-||+..|+.|.|..=+=
T Consensus 16 ~L~~RV~qyl~~n~~~~YvD 35 (78)
T 2rre_A 16 KLKQRVIQYLSSNRCGKYVD 35 (78)
T ss_dssp HHHHHHHHHHHHCCCSSSCC
T ss_pred HHHHHHHHHHHhCCCCcccc
Confidence 68899999999999965443
No 15
>3gpr_D Rhodocetin subunit delta; disulfide bond, lectin, secreted, toxin, cell adhesion; 3.20A {Calloselasma rhodostoma}
Probab=20.64 E-value=48 Score=18.72 Aligned_cols=19 Identities=21% Similarity=0.331 Sum_probs=11.6
Q ss_pred hHHHHhhCCCcceeeeccc
Q 036513 8 VKALLHTKSSGCTFWMGNL 26 (69)
Q Consensus 8 VKalL~~n~c~~AFwmGNL 26 (69)
|+.++....-...||||--
T Consensus 50 l~~~~~~~~~~~~~WIGl~ 68 (124)
T 3gpr_D 50 VGKLASQTLKYTSMWLGLN 68 (124)
T ss_dssp HHHHHHHSCSSCCBCCSEE
T ss_pred HHHHHHhcCCCCCEEEEeE
Confidence 3445554434478999944
Done!