BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036514
         (328 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P48974|V1BR_RAT Vasopressin V1b receptor OS=Rattus norvegicus GN=Avpr1b PE=2 SV=1
          Length = 425

 Score = 34.7 bits (78), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 37/84 (44%), Gaps = 25/84 (29%)

Query: 132 FPSPLGPRGKSHSIACQDSVPKIQEQLSTNELFS---------LGS-------------- 168
           F S L PR  SH   C  S P++  QLST+ L S          GS              
Sbjct: 342 FNSRLLPRSLSHHACCTGSKPQVHRQLSTSSLTSRRTTLLTHACGSPTLRLSLNLSLRAK 401

Query: 169 -RPPGSVEDGEEVD-QAAGSPSIY 190
            RP GS++D E+VD +A    SI+
Sbjct: 402 PRPAGSLKDLEQVDGEATMETSIF 425


>sp|A6LM32|DNAK_THEM4 Chaperone protein DnaK OS=Thermosipho melanesiensis (strain BI429 /
           DSM 12029) GN=dnaK PE=3 SV=1
          Length = 596

 Score = 32.3 bits (72), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 56/123 (45%), Gaps = 10/123 (8%)

Query: 102 RSCLQSLCKDIPQSSRKGMTPALRDCKLK--DFPSPLGPRGKSHSIACQDSVPKI----- 154
           RS  +SL +D+ + +RK +  AL D KLK  D    +   G +     Q+ + +I     
Sbjct: 279 RSMFESLTRDLVEMTRKPIEQALSDAKLKPEDIDEIILVGGMTRVPMIQNFIKEIFGKEP 338

Query: 155 QEQLSTNELFSLGSRPPGSVEDGEEVDQAAGSPSIYSRSPVKAPLGIPINGKGTPKLLHK 214
            ++++ +E  ++G+    ++  GEE    A    I         LGI + G     ++ +
Sbjct: 339 NKRVNPDEAVAMGAAIQAAILAGEE---GAQGKDIVLVDVTPLTLGIEVKGGLFEPIIPR 395

Query: 215 SST 217
           +ST
Sbjct: 396 NST 398


>sp|Q93575|RTEL1_CAEEL Regulator of telomere elongation helicase 1 homolog
           OS=Caenorhabditis elegans GN=rtel-1 PE=3 SV=3
          Length = 994

 Score = 32.3 bits (72), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 6/103 (5%)

Query: 32  FSLLTRYLSLKISK--SEFDRLCIGTIGRENVRLHNRLLRSIIQNACLS-KTPPPKEPKV 88
           FSL T    LKI K   E D  C+ +I  E+ +   ++       + L+ K+ PPK+ K+
Sbjct: 841 FSLPTNEDELKIKKWEQENDIQCLSSIPLESNKRKFKIETPGPSTSTLTQKSEPPKKKKI 900

Query: 89  DGFERGKVPNGYQRSC---LQSLCKDIPQSSRKGMTPALRDCK 128
               R  +P+ YQ++       L KD+   ++K     LR  K
Sbjct: 901 LLLTRNTLPDEYQKAIEIPTSELLKDMSDDNKKQFATTLRSYK 943


>sp|Q6GMF2|TADA1_XENLA Transcriptional adapter 1 OS=Xenopus laevis GN=tada1 PE=2 SV=1
          Length = 331

 Score = 32.0 bits (71), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 24/43 (55%)

Query: 30 KYFSLLTRYLSLKISKSEFDRLCIGTIGRENVRLHNRLLRSII 72
          +Y++ L  +   KISK EFD      + +ENV  HN  L +I+
Sbjct: 25 QYWANLKLWFKQKISKEEFDIEARRLLTQENVHSHNDFLLAIL 67


>sp|O76041|NEBL_HUMAN Nebulette OS=Homo sapiens GN=NEBL PE=1 SV=1
          Length = 1014

 Score = 31.6 bits (70), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 5/85 (5%)

Query: 176 DGEEVDQAAGSPSIYSRSPVKAPLGIPINGKGTPKLLHKSSTDAYYTGICQNHGELPDAY 235
           D  E+  A  +  I S    K  L   I GKG      + STD       +   E+    
Sbjct: 467 DTLEMQHAKKAAEIASEKDYKRDLETEIKGKGM-----QVSTDTLDVQRAKKASEMASQK 521

Query: 236 SLRKRLEKKLEMEGLKVSVDCANLL 260
             +K LE +++ +G++VS+D  ++L
Sbjct: 522 QYKKDLENEIKGKGMQVSMDIPDIL 546


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.135    0.401 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 127,498,322
Number of Sequences: 539616
Number of extensions: 5662703
Number of successful extensions: 13574
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 13564
Number of HSP's gapped (non-prelim): 21
length of query: 328
length of database: 191,569,459
effective HSP length: 118
effective length of query: 210
effective length of database: 127,894,771
effective search space: 26857901910
effective search space used: 26857901910
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)