Query 036514
Match_columns 328
No_of_seqs 157 out of 178
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 03:56:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036514.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036514hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h3o_A Transcription initiatio 97.5 0.00011 3.8E-09 56.4 5.3 55 231-285 2-57 (75)
2 1taf_B TFIID TBP associated fa 96.9 0.003 1E-07 47.8 7.4 58 240-302 11-69 (70)
3 1id3_B Histone H4; nucleosome 95.9 0.023 7.9E-07 45.7 7.2 59 241-304 34-93 (102)
4 2hue_C Histone H4; mini beta s 95.6 0.026 9E-07 43.7 6.2 59 241-304 16-75 (84)
5 2yfw_B Histone H4, H4; cell cy 95.5 0.045 1.5E-06 44.0 7.5 61 239-304 33-94 (103)
6 1tzy_D Histone H4-VI; histone- 95.4 0.047 1.6E-06 43.9 7.5 60 240-304 34-94 (103)
7 3b0b_B CENP-S, centromere prot 95.2 0.018 6.1E-07 47.0 4.4 69 237-310 21-93 (107)
8 1ku5_A HPHA, archaeal histon; 95.2 0.07 2.4E-06 39.7 7.4 58 240-302 11-69 (70)
9 3b0c_T CENP-T, centromere prot 94.9 0.081 2.8E-06 43.2 7.5 62 244-310 16-78 (111)
10 1taf_A TFIID TBP associated fa 94.3 0.22 7.6E-06 37.3 8.0 59 240-303 6-65 (68)
11 4dra_A Centromere protein S; D 93.7 0.07 2.4E-06 43.8 4.7 69 236-309 28-100 (113)
12 3v9r_A MHF1, uncharacterized p 93.5 0.2 6.9E-06 39.5 6.8 69 236-309 13-85 (90)
13 1b67_A Protein (histone HMFA); 92.4 0.46 1.6E-05 34.7 7.1 60 239-303 6-66 (68)
14 3vh5_A CENP-S; histone fold, c 92.0 0.19 6.4E-06 42.7 5.0 69 236-309 20-92 (140)
15 1f1e_A Histone fold protein; a 91.6 0.43 1.5E-05 41.1 7.1 61 239-304 86-147 (154)
16 1n1j_B NF-YC; histone-like PAI 90.7 0.6 2E-05 36.8 6.6 64 238-306 22-87 (97)
17 1h3o_B Transcription initiatio 89.0 1.7 5.8E-05 33.1 7.5 70 228-304 2-71 (76)
18 4g92_C HAPE; transcription fac 88.4 1 3.5E-05 36.9 6.5 64 239-307 45-110 (119)
19 2ly8_A Budding yeast chaperone 88.3 1 3.4E-05 37.4 6.3 53 248-305 60-113 (121)
20 1n1j_A NF-YB; histone-like PAI 87.7 2.3 7.7E-05 33.0 7.8 60 238-302 11-73 (93)
21 3b0c_W CENP-W, centromere prot 87.6 1.9 6.3E-05 32.4 7.0 49 250-303 21-69 (76)
22 1f1e_A Histone fold protein; a 85.6 1.8 6.1E-05 37.2 6.6 57 241-302 10-68 (154)
23 1jfi_A Transcription regulator 85.0 1 3.4E-05 35.7 4.5 63 239-306 15-79 (98)
24 2l5a_A Histone H3-like centrom 83.0 1.2 4E-05 40.9 4.5 56 243-303 169-225 (235)
25 2nqb_D Histone H2B; nucleosome 82.6 2.2 7.4E-05 35.5 5.6 48 251-303 51-98 (123)
26 1tzy_B Histone H2B; histone-fo 81.9 2.4 8E-05 35.4 5.6 49 250-303 53-101 (126)
27 2f8n_G Core histone macro-H2A. 79.9 4 0.00014 33.5 6.4 62 239-305 26-89 (120)
28 2byk_A Chrac-16; nucleosome sl 76.9 5.6 0.00019 33.5 6.6 51 251-306 37-88 (140)
29 2byk_B Chrac-14; nucleosome sl 76.5 8.1 0.00028 31.9 7.3 61 239-304 13-76 (128)
30 2nqb_C Histone H2A; nucleosome 73.9 7.6 0.00026 32.0 6.4 62 239-305 27-90 (123)
31 2f8n_K Histone H2A type 1; nuc 72.5 8.3 0.00028 32.9 6.5 62 239-305 48-111 (149)
32 1tzy_A Histone H2A-IV; histone 70.6 9.8 0.00034 31.6 6.4 62 239-305 29-92 (129)
33 3uk6_A RUVB-like 2; hexameric 69.9 22 0.00075 32.5 9.4 71 228-303 255-329 (368)
34 1id3_C Histone H2A.1; nucleoso 69.2 8.2 0.00028 32.1 5.7 62 239-305 29-92 (131)
35 2jss_A Chimera of histone H2B. 68.7 10 0.00035 33.3 6.6 49 250-303 20-68 (192)
36 3bos_A Putative DNA replicatio 65.9 18 0.00063 30.3 7.5 68 230-303 172-242 (242)
37 1f66_C Histone H2A.Z; nucleoso 63.7 18 0.00061 29.9 6.7 63 239-306 31-96 (128)
38 1jfi_B DR1 protein, transcript 60.5 37 0.0013 29.7 8.4 65 228-302 13-79 (179)
39 1nla_A Transcriptional repress 52.4 16 0.00053 26.8 3.9 33 235-267 16-48 (64)
40 2czy_A Paired amphipathic heli 51.2 23 0.00078 26.5 4.8 49 18-71 13-63 (77)
41 1baz_A ARC repressor; transcri 49.5 17 0.0006 25.2 3.7 31 235-265 16-46 (53)
42 2hue_B Histone H3; mini beta s 47.8 43 0.0015 25.3 5.9 49 250-303 24-72 (77)
43 3qoq_A Alginate and motility r 45.4 17 0.00058 27.0 3.2 34 230-265 25-58 (69)
44 2k9i_A Plasmid PRN1, complete 42.0 30 0.001 23.1 3.9 32 235-270 18-49 (55)
45 2jss_A Chimera of histone H2B. 41.6 51 0.0017 28.8 6.3 64 239-307 109-175 (192)
46 2cr7_A Paired amphipathic heli 41.0 29 0.001 26.1 4.0 49 18-71 19-69 (80)
47 2ld7_B Paired amphipathic heli 38.7 33 0.0011 25.6 4.0 48 11-58 10-58 (75)
48 3nqj_A Histone H3-like centrom 37.5 83 0.0029 24.0 6.1 50 250-304 26-75 (82)
49 2chg_A Replication factor C sm 36.7 1.1E+02 0.0037 24.7 7.3 65 231-302 160-224 (226)
50 3r45_A Histone H3-like centrom 35.3 46 0.0016 28.5 4.8 50 250-304 100-149 (156)
51 2yfv_A Histone H3-like centrom 35.0 72 0.0025 25.2 5.6 50 249-303 50-99 (100)
52 1tzy_C Histone H3; histone-fol 34.3 76 0.0026 26.5 5.9 49 250-303 83-131 (136)
53 2v6z_M DNA polymerase epsilon 31.3 1.2E+02 0.0043 23.8 6.4 64 235-301 28-95 (99)
54 3nqu_A Histone H3-like centrom 31.3 1E+02 0.0034 25.9 6.1 52 249-305 83-134 (140)
55 1tiz_A Calmodulin-related prot 30.5 97 0.0033 20.1 5.1 49 6-55 14-66 (67)
56 2c9o_A RUVB-like 1; hexameric 28.6 2.3E+02 0.0077 27.1 9.2 73 228-305 362-438 (456)
57 2l9s_A PHD finger protein 12; 28.3 23 0.0008 24.3 1.4 13 297-309 18-30 (45)
58 1u9p_A PARC; unknown function; 27.1 57 0.0019 26.8 3.8 34 235-268 27-60 (120)
59 3b9p_A CG5977-PA, isoform A; A 26.2 1E+02 0.0034 27.1 5.7 76 228-303 185-271 (297)
60 1mnt_A MNT repressor; transcri 25.6 61 0.0021 24.1 3.5 30 235-264 13-42 (76)
61 1njg_A DNA polymerase III subu 25.0 1.4E+02 0.0047 24.2 6.1 65 232-302 185-249 (250)
62 2kel_A SVTR protein, uncharact 24.8 1.2E+02 0.004 21.2 4.7 32 235-270 22-53 (56)
63 1e91_A Paired amphipathic heli 23.8 94 0.0032 23.5 4.3 49 17-70 15-75 (85)
64 2v1u_A Cell division control p 21.5 3.9E+02 0.013 23.7 8.9 67 232-303 201-275 (387)
65 1in4_A RUVB, holliday junction 21.0 3E+02 0.01 24.9 8.1 72 227-303 175-249 (334)
66 3vfd_A Spastin; ATPase, microt 20.8 72 0.0025 29.8 3.8 75 229-303 279-364 (389)
67 1jr3_D DNA polymerase III, del 20.8 96 0.0033 28.1 4.6 35 232-266 142-176 (343)
68 3d8b_A Fidgetin-like protein 1 20.7 1.9E+02 0.0065 26.6 6.7 81 228-308 247-339 (357)
No 1
>1h3o_A Transcription initiation factor TFIID 135 kDa subunit; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=97.52 E-value=0.00011 Score=56.44 Aligned_cols=55 Identities=13% Similarity=0.172 Sum_probs=44.4
Q ss_pred CCCHHhHHHHHHHHHHHhCC-CCChhHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 036514 231 LPDAYSLRKRLEKKLEMEGL-KVSVDCANLLNNGLDVFMKRLIKPCLELAGSRSGH 285 (328)
Q Consensus 231 LPDt~sL~~RM~~ia~e~GL-gVs~~ca~lLn~aLd~yLK~LI~s~i~l~~~R~~~ 285 (328)
|-....|.+||..|+..+|| .++.|++++++.|.+..|++||+-.+..|.-|.-.
T Consensus 2 fL~~~~Lqkri~~I~~k~gl~~~~~dv~~~iS~a~qeRLr~llekl~~~a~~R~~~ 57 (75)
T 1h3o_A 2 FLLQAPLQRRILEIGKKHGITELHPDVVSYVSHATQQRLQNLVEKISETAQQKNFS 57 (75)
T ss_dssp CSCHHHHHHHHHHHHHTTTCCEECTTHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred ccccHHHHHHHHHHHHhcCCCcCChhHHHHhHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 34677899999999999999 89999999999999999999999999998877643
No 2
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=96.92 E-value=0.003 Score=47.85 Aligned_cols=58 Identities=17% Similarity=0.274 Sum_probs=51.4
Q ss_pred HHHHHHHHhCC-CCChhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccchHhhHHHHHH
Q 036514 240 RLEKKLEMEGL-KVSVDCANLLNNGLDVFMKRLIKPCLELAGSRSGHKHSSFSASILDFQVATE 302 (328)
Q Consensus 240 RM~~ia~e~GL-gVs~~ca~lLn~aLd~yLK~LI~s~i~l~~~R~~~~~~~~~~Sl~Df~~amE 302 (328)
=+..+|+..|. .|+.||+..|..-++.++++|++.++.+++- .++..++..|+..|+.
T Consensus 11 ~v~~iaes~Gi~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrH-----akRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 11 SMKVIAESIGVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNH-----AKRQKLSVRDIDMSLK 69 (70)
T ss_dssp HHHHHHHHTTCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----TTCSSBCHHHHHHHHC
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCeecHHHHHHHHc
Confidence 36789999999 9999999999999999999999999999884 2355699999999875
No 3
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=95.85 E-value=0.023 Score=45.74 Aligned_cols=59 Identities=14% Similarity=0.174 Sum_probs=52.3
Q ss_pred HHHHHHHhCC-CCChhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccchHhhHHHHHHhC
Q 036514 241 LEKKLEMEGL-KVSVDCANLLNNGLDVFMKRLIKPCLELAGSRSGHKHSSFSASILDFQVATELN 304 (328)
Q Consensus 241 M~~ia~e~GL-gVs~~ca~lLn~aLd~yLK~LI~s~i~l~~~R~~~~~~~~~~Sl~Df~~amEln 304 (328)
+..+|+..|. .||.++.+.|...|+.|+.+|++.++.++.. .....++..|+..||..+
T Consensus 34 I~Rlar~~Gv~rIS~da~~~l~~~le~fi~~I~~dA~~~a~H-----akRKTVt~~DV~~ALkr~ 93 (102)
T 1id3_B 34 IRRLARRGGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEH-----AKRKTVTSLDVVYALKRQ 93 (102)
T ss_dssp HHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHH-----TTCSEECHHHHHHHHHHT
T ss_pred HHHHHHHcCchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCcCcHHHHHHHHHHc
Confidence 6677788899 8999999999999999999999999999985 345679999999999965
No 4
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=95.56 E-value=0.026 Score=43.69 Aligned_cols=59 Identities=14% Similarity=0.189 Sum_probs=52.0
Q ss_pred HHHHHHHhCC-CCChhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccchHhhHHHHHHhC
Q 036514 241 LEKKLEMEGL-KVSVDCANLLNNGLDVFMKRLIKPCLELAGSRSGHKHSSFSASILDFQVATELN 304 (328)
Q Consensus 241 M~~ia~e~GL-gVs~~ca~lLn~aLd~yLK~LI~s~i~l~~~R~~~~~~~~~~Sl~Df~~amEln 304 (328)
+..+|+..|. .||.++.+.|...|+.|+++|++.++.+++. .++..++..|+..||...
T Consensus 16 I~Riar~~Gv~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~h-----a~RKTvt~~DV~~Alk~~ 75 (84)
T 2hue_C 16 IRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEH-----AKRKTVTAMDVVYALKRQ 75 (84)
T ss_dssp HHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHH-----TTCSEECHHHHHHHTTTT
T ss_pred HHHHHHHcCchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCcCcHHHHHHHHHHc
Confidence 5577888899 8999999999999999999999999999885 345679999999999865
No 5
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=95.45 E-value=0.045 Score=43.98 Aligned_cols=61 Identities=15% Similarity=0.192 Sum_probs=53.7
Q ss_pred HHHHHHHHHhCC-CCChhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccchHhhHHHHHHhC
Q 036514 239 KRLEKKLEMEGL-KVSVDCANLLNNGLDVFMKRLIKPCLELAGSRSGHKHSSFSASILDFQVATELN 304 (328)
Q Consensus 239 ~RM~~ia~e~GL-gVs~~ca~lLn~aLd~yLK~LI~s~i~l~~~R~~~~~~~~~~Sl~Df~~amEln 304 (328)
..+..+|+..|. .|+.++++.|...|+.|+.+|++-++..++. .....|+..|+..||+-.
T Consensus 33 ~~I~Rlar~~G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~h-----akRktvt~~DV~~Alr~~ 94 (103)
T 2yfw_B 33 PAIRRLARRGGVKRISGLIYEEVRNVLKTFLESVIRDAVTYTEH-----AKRKTVTSLDVVYALKRQ 94 (103)
T ss_dssp HHHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHH-----TTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHcCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCcCcHHHHHHHHHHc
Confidence 357778888899 8999999999999999999999999999885 345679999999999864
No 6
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=95.42 E-value=0.047 Score=43.85 Aligned_cols=60 Identities=13% Similarity=0.183 Sum_probs=53.7
Q ss_pred HHHHHHHHhCC-CCChhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccchHhhHHHHHHhC
Q 036514 240 RLEKKLEMEGL-KVSVDCANLLNNGLDVFMKRLIKPCLELAGSRSGHKHSSFSASILDFQVATELN 304 (328)
Q Consensus 240 RM~~ia~e~GL-gVs~~ca~lLn~aLd~yLK~LI~s~i~l~~~R~~~~~~~~~~Sl~Df~~amEln 304 (328)
.+..+|+..|. .|+.++++.|...|+.|+.+|++.++..++. .....|+..|+..||+-.
T Consensus 34 ~I~Rlar~~G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~h-----akRktIt~~DV~~Alr~~ 94 (103)
T 1tzy_D 34 AIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEH-----AKRKTVTAMDVVYALKRQ 94 (103)
T ss_dssp HHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHH-----TTCSEECHHHHHHHHHHT
T ss_pred HHHHHHHHcCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCcCCHHHHHHHHHHc
Confidence 67778888899 8999999999999999999999999999885 345679999999999975
No 7
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=95.22 E-value=0.018 Score=46.97 Aligned_cols=69 Identities=6% Similarity=-0.103 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHhCC----CCChhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccchHhhHHHHHHhCCccccC
Q 036514 237 LRKRLEKKLEMEGL----KVSVDCANLLNNGLDVFMKRLIKPCLELAGSRSGHKHSSFSASILDFQVATELNPQILGN 310 (328)
Q Consensus 237 L~~RM~~ia~e~GL----gVs~~ca~lLn~aLd~yLK~LI~s~i~l~~~R~~~~~~~~~~Sl~Df~~amElnP~lLg~ 310 (328)
|+-.+..||.+.|. .|++++++.|.-.+..|..+|.+-...+|+. .++..|.+.|++.|+.-||++++.
T Consensus 21 l~~~V~rI~~~~g~~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~H-----AgRkTI~~eDV~La~Rrn~~l~~~ 93 (107)
T 3b0b_B 21 VHYTTGCLCQDVAEDKGVLFSKQTVAAISEITFRQCENFARDLEMFARH-----AKRSTITSEDVKLLARRSNSLLKY 93 (107)
T ss_dssp HHHHHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----TTCSEECHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHHhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCcCcCCHHHHHHHHHhCHHHHHH
Confidence 44447788888876 5999999999999999999999999999885 346689999999999999999864
No 8
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=95.21 E-value=0.07 Score=39.66 Aligned_cols=58 Identities=19% Similarity=0.324 Sum_probs=50.8
Q ss_pred HHHHHHHHhCC-CCChhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccchHhhHHHHHH
Q 036514 240 RLEKKLEMEGL-KVSVDCANLLNNGLDVFMKRLIKPCLELAGSRSGHKHSSFSASILDFQVATE 302 (328)
Q Consensus 240 RM~~ia~e~GL-gVs~~ca~lLn~aLd~yLK~LI~s~i~l~~~R~~~~~~~~~~Sl~Df~~amE 302 (328)
.+..++++.|- .++.++.+.|..+++.|+.+|++-+...+.. .++..|+..|+..|++
T Consensus 11 ~v~Rl~r~~g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~h-----akRkTI~~~DV~lA~~ 69 (70)
T 1ku5_A 11 PVDRLIRKAGAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARH-----AGRKTVKVEDIKLAIK 69 (70)
T ss_dssp HHHHHHHHTTCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----TTCSEECHHHHHHHHT
T ss_pred HHHHHHHHcCcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCcCCHHHHHHHHH
Confidence 66777778898 8999999999999999999999999999874 3456799999999986
No 9
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=94.87 E-value=0.081 Score=43.15 Aligned_cols=62 Identities=6% Similarity=0.063 Sum_probs=53.8
Q ss_pred HHHHhCC-CCChhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccchHhhHHHHHHhCCccccC
Q 036514 244 KLEMEGL-KVSVDCANLLNNGLDVFMKRLIKPCLELAGSRSGHKHSSFSASILDFQVATELNPQILGN 310 (328)
Q Consensus 244 ia~e~GL-gVs~~ca~lLn~aLd~yLK~LI~s~i~l~~~R~~~~~~~~~~Sl~Df~~amElnP~lLg~ 310 (328)
++...|- .||.++.+.|...++.|+.++++-+..+++. .++..|+..|+..||.-|+.+--.
T Consensus 16 i~r~~g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~H-----A~RKTV~~eDV~lalrr~g~~~~~ 78 (111)
T 3b0c_T 16 IFSHYVKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQH-----AGRKTVEMADVELLMRRQGLVTDK 78 (111)
T ss_dssp HHHHHHCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----TTCSEECHHHHHHHHHHTTSSBTT
T ss_pred HHHHCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCcCCHHHHHHHHHHCCCcccc
Confidence 4555577 8999999999999999999999999999985 345679999999999999988643
No 10
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=94.26 E-value=0.22 Score=37.27 Aligned_cols=59 Identities=14% Similarity=0.083 Sum_probs=52.7
Q ss_pred HHHHHHHHhCC-CCChhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccchHhhHHHHHHh
Q 036514 240 RLEKKLEMEGL-KVSVDCANLLNNGLDVFMKRLIKPCLELAGSRSGHKHSSFSASILDFQVATEL 303 (328)
Q Consensus 240 RM~~ia~e~GL-gVs~~ca~lLn~aLd~yLK~LI~s~i~l~~~R~~~~~~~~~~Sl~Df~~amEl 303 (328)
-|..|+...|. .+++++++.|.--+..|...|++-...+++-. +...|+..|.+.|.+.
T Consensus 6 ~i~~iLk~~G~~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HA-----grktv~~eDVkLAi~~ 65 (68)
T 1taf_A 6 VIMSILKELNVQEYEPRVVNQLLEFTFRYVTSILDDAKVYANHA-----RKKTIDLDDVRLATEV 65 (68)
T ss_dssp HHHHHHHHTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----TCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCCCCCHHHHHHHHHh
Confidence 46788889999 99999999999999999999999999999853 3467999999999875
No 11
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=93.72 E-value=0.07 Score=43.85 Aligned_cols=69 Identities=10% Similarity=-0.008 Sum_probs=58.9
Q ss_pred hHHHHHHHHHHHhCC----CCChhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccchHhhHHHHHHhCCcccc
Q 036514 236 SLRKRLEKKLEMEGL----KVSVDCANLLNNGLDVFMKRLIKPCLELAGSRSGHKHSSFSASILDFQVATELNPQILG 309 (328)
Q Consensus 236 sL~~RM~~ia~e~GL----gVs~~ca~lLn~aLd~yLK~LI~s~i~l~~~R~~~~~~~~~~Sl~Df~~amElnP~lLg 309 (328)
.|+--+..|+.+.|. .||+++++.|.-.+..|..+|-+-...+|+= .++..|...|++.++.-||+|+.
T Consensus 28 al~y~V~rIvke~gaer~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkH-----AgRkTI~~eDV~La~Rr~~~L~~ 100 (113)
T 4dra_A 28 AVHYTVGCLCEEVALDKEMQFSKQTIAAISELTFRQCENFAKDLEMFARH-----AKRTTINTEDVKLLARRSNSLLK 100 (113)
T ss_dssp HHHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----TTCSEECHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCccCHHHHHHHHHhCHHHHH
Confidence 355566788888876 4999999999999999999999999999873 34677999999999999999864
No 12
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=93.47 E-value=0.2 Score=39.51 Aligned_cols=69 Identities=14% Similarity=0.079 Sum_probs=57.7
Q ss_pred hHHHHHHHHHHHh----CCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccchHhhHHHHHHhCCcccc
Q 036514 236 SLRKRLEKKLEME----GLKVSVDCANLLNNGLDVFMKRLIKPCLELAGSRSGHKHSSFSASILDFQVATELNPQILG 309 (328)
Q Consensus 236 sL~~RM~~ia~e~----GLgVs~~ca~lLn~aLd~yLK~LI~s~i~l~~~R~~~~~~~~~~Sl~Df~~amElnP~lLg 309 (328)
.|+--...||.++ |..||+++++.|.-.+..|+.+|.+-...+|+- .++..|...|++.++.-||+|..
T Consensus 13 al~~~V~ki~~e~~~~~g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~H-----AgRkTI~~eDV~L~~Rrn~~L~~ 85 (90)
T 3v9r_A 13 RLWIRVEERLQQVLSSEDIKYTPRFINSLLELAYLQLGEMGSDLQAFARH-----AGRGVVNKSDLMLYLRKQPDLQE 85 (90)
T ss_dssp HHHHHHHHHHHHHSCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----TTCSEECHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCccCHHHHHHHHHhChHHHH
Confidence 3445567888888 345999999999999999999999999999873 34678999999999999998853
No 13
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=92.43 E-value=0.46 Score=34.75 Aligned_cols=60 Identities=17% Similarity=0.219 Sum_probs=49.0
Q ss_pred HHHHHHHHHhCC-CCChhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccchHhhHHHHHHh
Q 036514 239 KRLEKKLEMEGL-KVSVDCANLLNNGLDVFMKRLIKPCLELAGSRSGHKHSSFSASILDFQVATEL 303 (328)
Q Consensus 239 ~RM~~ia~e~GL-gVs~~ca~lLn~aLd~yLK~LI~s~i~l~~~R~~~~~~~~~~Sl~Df~~amEl 303 (328)
.++..++.+-|- .++.++...|..+++.|+-.|.+.+.+.+.. .++..|+-.|+..|++.
T Consensus 6 a~v~Ri~k~~~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~-----~kRkTI~~~Di~~A~~~ 66 (68)
T 1b67_A 6 APIGRIIKNAGAERVSDDARIALAKVLEEMGEEIASEAVKLAKH-----AGRKTIKAEDIELARKM 66 (68)
T ss_dssp HHHHHHHHHTTCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----TTCSEECHHHHHHHGGG
T ss_pred cHHHHHHhcCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCccCHHHHHHHHHh
Confidence 345555555566 8999999999999999999999999998875 34667999999999863
No 14
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=91.99 E-value=0.19 Score=42.74 Aligned_cols=69 Identities=6% Similarity=-0.077 Sum_probs=58.0
Q ss_pred hHHHHHHHHHHHhCC----CCChhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccchHhhHHHHHHhCCcccc
Q 036514 236 SLRKRLEKKLEMEGL----KVSVDCANLLNNGLDVFMKRLIKPCLELAGSRSGHKHSSFSASILDFQVATELNPQILG 309 (328)
Q Consensus 236 sL~~RM~~ia~e~GL----gVs~~ca~lLn~aLd~yLK~LI~s~i~l~~~R~~~~~~~~~~Sl~Df~~amElnP~lLg 309 (328)
.|+--...||.+.|. .||++++..|.-.+..|+.+|-+-...+|+- .++..|...|++.++.-||+|+.
T Consensus 20 Al~y~VgkIvee~~~~~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkH-----AGRKTI~~eDVkLa~Rrn~~L~~ 92 (140)
T 3vh5_A 20 AVHYTTGALAQDVAEDKGVLFSKQTVAAISEITFRQAENFARDLEMFARH-----AKRSTITSEDVKLLARRSNSLLK 92 (140)
T ss_dssp HHHHHHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----TTCSEECHHHHHHHHTTSHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCccCHHHHHHHHHhCHHHHH
Confidence 345556677777755 5999999999999999999999999999873 34678999999999999999864
No 15
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=91.64 E-value=0.43 Score=41.09 Aligned_cols=61 Identities=18% Similarity=0.177 Sum_probs=53.4
Q ss_pred HHHHHHHHHhCC-CCChhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccchHhhHHHHHHhC
Q 036514 239 KRLEKKLEMEGL-KVSVDCANLLNNGLDVFMKRLIKPCLELAGSRSGHKHSSFSASILDFQVATELN 304 (328)
Q Consensus 239 ~RM~~ia~e~GL-gVs~~ca~lLn~aLd~yLK~LI~s~i~l~~~R~~~~~~~~~~Sl~Df~~amEln 304 (328)
..+..++.+.|- .||.++.+.|...|+.|+-+|.+...+++.. .++..|+-.|...||+.+
T Consensus 86 a~V~Ri~k~~g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~h-----a~RKTIt~eDV~~Al~~~ 147 (154)
T 1f1e_A 86 ATVRRILKRAGIERASSDAVDLYNKLICRATEELGEKAAEYADE-----DGRKTVQGEDVEKAITYS 147 (154)
T ss_dssp HHHHHHHHHTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----TTCSEECHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCccCHHHHHHHHHhc
Confidence 456677777788 8999999999999999999999999999986 346679999999999875
No 16
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=90.74 E-value=0.6 Score=36.84 Aligned_cols=64 Identities=14% Similarity=0.161 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhCC--CCChhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccchHhhHHHHHHhCCc
Q 036514 238 RKRLEKKLEMEGL--KVSVDCANLLNNGLDVFMKRLIKPCLELAGSRSGHKHSSFSASILDFQVATELNPQ 306 (328)
Q Consensus 238 ~~RM~~ia~e~GL--gVs~~ca~lLn~aLd~yLK~LI~s~i~l~~~R~~~~~~~~~~Sl~Df~~amElnP~ 306 (328)
-.|+-.|+...+= .|+.++..++.-|++.|+..|.+.+.+.++.. +...|+-.|+..|++-+..
T Consensus 22 ~arIkrImK~~~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~-----krktI~~~di~~Av~~~e~ 87 (97)
T 1n1j_B 22 LARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDN-----KRRTLQRNDIAMAITKFDQ 87 (97)
T ss_dssp HHHHHHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----TCSEECHHHHHHHHTTCGG
T ss_pred HHHHHHHHccCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCccCCHHHHHHHHhcCcH
Confidence 3577777776655 59999999999999999999999999888652 3567999999999987654
No 17
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=88.97 E-value=1.7 Score=33.14 Aligned_cols=70 Identities=16% Similarity=0.169 Sum_probs=55.6
Q ss_pred hCCCCCHHhHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccchHhhHHHHHHhC
Q 036514 228 HGELPDAYSLRKRLEKKLEMEGLKVSVDCANLLNNGLDVFMKRLIKPCLELAGSRSGHKHSSFSASILDFQVATELN 304 (328)
Q Consensus 228 sgeLPDt~sL~~RM~~ia~e~GLgVs~~ca~lLn~aLd~yLK~LI~s~i~l~~~R~~~~~~~~~~Sl~Df~~amEln 304 (328)
||.+-....|..-+.++. -|..+++++-++|..-.|.|+.+++.....+|+.|.. ..+.+.|+...+|-|
T Consensus 2 s~~vl~k~~L~~Lv~~id--p~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s-----~~le~kDvql~Ler~ 71 (76)
T 1h3o_B 2 SHMVLTKKKLQDLVREVD--PNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKS-----STLEVKDVQLHLERQ 71 (76)
T ss_dssp -CCSSCHHHHHHHHHHHC--SSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHH
T ss_pred CcccccHHHHHHHHHhcC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----CCccHHHHHHHHHhh
Confidence 344555566666666663 3448999999999999999999999999999999765 458899999998865
No 18
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=88.36 E-value=1 Score=36.86 Aligned_cols=64 Identities=19% Similarity=0.233 Sum_probs=51.2
Q ss_pred HHHHHHHHH-hCC-CCChhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccchHhhHHHHHHhCCcc
Q 036514 239 KRLEKKLEM-EGL-KVSVDCANLLNNGLDVFMKRLIKPCLELAGSRSGHKHSSFSASILDFQVATELNPQI 307 (328)
Q Consensus 239 ~RM~~ia~e-~GL-gVs~~ca~lLn~aLd~yLK~LI~s~i~l~~~R~~~~~~~~~~Sl~Df~~amElnP~l 307 (328)
.|+..|+.. ... .|+.++.-++..|++.|+..|.+.+.+.++.+. ...|+-.|+..|++-++.+
T Consensus 45 aRIkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~k-----rktI~~~di~~Av~~~e~~ 110 (119)
T 4g92_C 45 ARIKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNK-----RRTLQRSDIAAALSKSDMF 110 (119)
T ss_dssp HHHHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----CSEECHHHHHHHHTTCGGG
T ss_pred HHHHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----cCccCHHHHHHHHhcCchh
Confidence 455666653 223 699999999999999999999999998887533 4569999999999887654
No 19
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=88.31 E-value=1 Score=37.35 Aligned_cols=53 Identities=15% Similarity=0.159 Sum_probs=45.8
Q ss_pred hCC-CCChhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccchHhhHHHHHHhCC
Q 036514 248 EGL-KVSVDCANLLNNGLDVFMKRLIKPCLELAGSRSGHKHSSFSASILDFQVATELNP 305 (328)
Q Consensus 248 ~GL-gVs~~ca~lLn~aLd~yLK~LI~s~i~l~~~R~~~~~~~~~~Sl~Df~~amElnP 305 (328)
.|. -||.++.+-+...|+.||.+||+.++.++.. .++..++..|...|+..-.
T Consensus 60 gGvkRIS~~iy~e~r~vl~~~l~~i~rdav~yaeh-----A~RKTVta~DV~~Alkr~G 113 (121)
T 2ly8_A 60 RGSKRISGLIYEEVRAVLKSFLESVIRDSVTYTEH-----AKRKTVTSLDVVYALKRQG 113 (121)
T ss_dssp CCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHH-----TTCCCBCHHHHHHHHHHTT
T ss_pred cCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCcCcHHHHHHHHHhCC
Confidence 566 6999999999999999999999999999986 3455799999999987543
No 20
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=87.71 E-value=2.3 Score=33.04 Aligned_cols=60 Identities=10% Similarity=0.066 Sum_probs=50.3
Q ss_pred HHHHHHHHHHhCC---CCChhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccchHhhHHHHHH
Q 036514 238 RKRLEKKLEMEGL---KVSVDCANLLNNGLDVFMKRLIKPCLELAGSRSGHKHSSFSASILDFQVATE 302 (328)
Q Consensus 238 ~~RM~~ia~e~GL---gVs~~ca~lLn~aLd~yLK~LI~s~i~l~~~R~~~~~~~~~~Sl~Df~~amE 302 (328)
..++..++.+.|= .|+.|+..+|..+++.|+..|.+.+.+.+.. .++..|+-.|+..|++
T Consensus 11 ~a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~-----~kRkTI~~~Dv~~Al~ 73 (93)
T 1n1j_A 11 IANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQ-----EKRKTINGEDILFAMS 73 (93)
T ss_dssp HHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----TTCSSBCHHHHHHHHH
T ss_pred hhHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCccCHHHHHHHHH
Confidence 4566777777753 6999999999999999999999999998874 2355799999999998
No 21
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=87.62 E-value=1.9 Score=32.40 Aligned_cols=49 Identities=16% Similarity=0.123 Sum_probs=43.5
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccchHhhHHHHHHh
Q 036514 250 LKVSVDCANLLNNGLDVFMKRLIKPCLELAGSRSGHKHSSFSASILDFQVATEL 303 (328)
Q Consensus 250 LgVs~~ca~lLn~aLd~yLK~LI~s~i~l~~~R~~~~~~~~~~Sl~Df~~amEl 303 (328)
.+||.|+.++|+.+++.|+..|-+...++++.. +...|+-.|+..|++.
T Consensus 21 ~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~-----~rKTI~~~dI~~A~~~ 69 (76)
T 3b0c_W 21 LRLAANTDLLVHLSFLLFLHRLAEEARTNAFEN-----KSKIIKPEHTIAAAKV 69 (76)
T ss_dssp CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHH-----TCSSBCHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCCCCCHHHHHHHHHH
Confidence 479999999999999999999999999998763 3557999999999974
No 22
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=85.56 E-value=1.8 Score=37.22 Aligned_cols=57 Identities=7% Similarity=0.126 Sum_probs=49.2
Q ss_pred HHHHHHHh-CC-CCChhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccchHhhHHHHHH
Q 036514 241 LEKKLEME-GL-KVSVDCANLLNNGLDVFMKRLIKPCLELAGSRSGHKHSSFSASILDFQVATE 302 (328)
Q Consensus 241 M~~ia~e~-GL-gVs~~ca~lLn~aLd~yLK~LI~s~i~l~~~R~~~~~~~~~~Sl~Df~~amE 302 (328)
+..++.+. |- .||.|+.+.|..+++.|+-.|.+...+++.. .++..|+-.|+..||.
T Consensus 10 V~Riik~~lg~~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~h-----a~RKTv~a~DV~~a~~ 68 (154)
T 1f1e_A 10 IERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDA-----SGKKTLMEEHLKALAD 68 (154)
T ss_dssp HHHHHHTTSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----TTCSEECHHHHHHHHH
T ss_pred HHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCcCCHHHHHHHHH
Confidence 45666666 77 8999999999999999999999999999875 3467899999999994
No 23
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=85.04 E-value=1 Score=35.66 Aligned_cols=63 Identities=19% Similarity=0.379 Sum_probs=47.1
Q ss_pred HHHHHHHHHhCC--CCChhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccchHhhHHHHHHhCCc
Q 036514 239 KRLEKKLEMEGL--KVSVDCANLLNNGLDVFMKRLIKPCLELAGSRSGHKHSSFSASILDFQVATELNPQ 306 (328)
Q Consensus 239 ~RM~~ia~e~GL--gVs~~ca~lLn~aLd~yLK~LI~s~i~l~~~R~~~~~~~~~~Sl~Df~~amElnP~ 306 (328)
.|+-.|+...+= -|+.+++-++.-++|.|+..|.+-+...++.+ +...|+-.|+..|++-+..
T Consensus 15 aRIkrimK~~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~-----krktI~~~di~~av~~~e~ 79 (98)
T 1jfi_A 15 ARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSR-----NAKTMTTSHLKQCIELEGD 79 (98)
T ss_dssp HHHHHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC--------CBCHHHHHTTCC----
T ss_pred HHHHHHHHcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCCeecHHHHHHHHhcCch
Confidence 466667665444 69999999999999999999999999988753 3456888999988876544
No 24
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=82.96 E-value=1.2 Score=40.90 Aligned_cols=56 Identities=14% Similarity=0.165 Sum_probs=48.4
Q ss_pred HHHHHhCC-CCChhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccchHhhHHHHHHh
Q 036514 243 KKLEMEGL-KVSVDCANLLNNGLDVFMKRLIKPCLELAGSRSGHKHSSFSASILDFQVATEL 303 (328)
Q Consensus 243 ~ia~e~GL-gVs~~ca~lLn~aLd~yLK~LI~s~i~l~~~R~~~~~~~~~~Sl~Df~~amEl 303 (328)
.+|+-.|. -||.++.+-+...|+.||++||+-++.++... +...++..|...|+..
T Consensus 169 RlaRrgGVkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA-----~RKTVta~DV~~ALKr 225 (235)
T 2l5a_A 169 EDGDKGGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHA-----KRKTVTSLDVVYALKR 225 (235)
T ss_dssp TTSCCTTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----TCCSCCHHHHHHHHHH
T ss_pred HHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCCcCcHHHHHHHHHh
Confidence 45677788 89999999999999999999999999999863 3456889999988864
No 25
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=82.60 E-value=2.2 Score=35.47 Aligned_cols=48 Identities=17% Similarity=0.223 Sum_probs=44.3
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccchHhhHHHHHHh
Q 036514 251 KVSVDCANLLNNGLDVFMKRLIKPCLELAGSRSGHKHSSFSASILDFQVATEL 303 (328)
Q Consensus 251 gVs~~ca~lLn~aLd~yLK~LI~s~i~l~~~R~~~~~~~~~~Sl~Df~~amEl 303 (328)
|+|.++.++||+-++....+|......++++ +....|+-.|+.+|+.|
T Consensus 51 gISskAm~ImnSfvnDiferIA~EAs~La~~-----nkr~TitsreIqtAvrL 98 (123)
T 2nqb_D 51 GISSKAMSIMNSFVNDIFERIAAEASRLAHY-----NKRSTITSREIQTAVRL 98 (123)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----TTCCEECHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCcCCHHHHHHHHHH
Confidence 8999999999999999999999999999998 44678999999999976
No 26
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=81.91 E-value=2.4 Score=35.38 Aligned_cols=49 Identities=16% Similarity=0.201 Sum_probs=44.7
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccchHhhHHHHHHh
Q 036514 250 LKVSVDCANLLNNGLDVFMKRLIKPCLELAGSRSGHKHSSFSASILDFQVATEL 303 (328)
Q Consensus 250 LgVs~~ca~lLn~aLd~yLK~LI~s~i~l~~~R~~~~~~~~~~Sl~Df~~amEl 303 (328)
.|+|.++.++||+-++....+|......++++ +....|+-.|+.+|+.|
T Consensus 53 ~gISskAm~ImnSfvnDiferIA~EAs~La~~-----nkr~TitsreIqtAvrL 101 (126)
T 1tzy_B 53 TGISSKAMGIMNSFVNDIFERIAGEASRLAHY-----NKRSTITSREIQTAVRL 101 (126)
T ss_dssp CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----TTCSEECHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCCCCHHHHHHHHHH
Confidence 38999999999999999999999999999998 44678999999999976
No 27
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=79.93 E-value=4 Score=33.53 Aligned_cols=62 Identities=8% Similarity=0.112 Sum_probs=53.1
Q ss_pred HHHHHHHHHhCC--CCChhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccchHhhHHHHHHhCC
Q 036514 239 KRLEKKLEMEGL--KVSVDCANLLNNGLDVFMKRLIKPCLELAGSRSGHKHSSFSASILDFQVATELNP 305 (328)
Q Consensus 239 ~RM~~ia~e~GL--gVs~~ca~lLn~aLd~yLK~LI~s~i~l~~~R~~~~~~~~~~Sl~Df~~amElnP 305 (328)
.|+..++.+.+. -|+.+++-+|.-.||.+.-+|++-+...|+- +....|+-+|++.|+.-+.
T Consensus 26 ~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~-----~k~~rItp~hi~lAI~nDe 89 (120)
T 2f8n_G 26 GRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARD-----NKKGRVTPRHILLAVANDE 89 (120)
T ss_dssp HHHHHHHHHHSSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHH-----TTCSEECHHHHHHHHHTSH
T ss_pred HHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhh-----cCCceEcHHHHHHHHhcCH
Confidence 688888888887 5999999999999999999999999988875 2356799999999987554
No 28
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=76.91 E-value=5.6 Score=33.49 Aligned_cols=51 Identities=10% Similarity=0.163 Sum_probs=44.1
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHh-hccCCCCCCCccchHhhHHHHHHhCCc
Q 036514 251 KVSVDCANLLNNGLDVFMKRLIKPCLELA-GSRSGHKHSSFSASILDFQVATELNPQ 306 (328)
Q Consensus 251 gVs~~ca~lLn~aLd~yLK~LI~s~i~l~-~~R~~~~~~~~~~Sl~Df~~amElnP~ 306 (328)
.|+.++.-++..|++.|+..|.+.+...+ .. .....|+-.|+..|++-++.
T Consensus 37 ~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~-----~kRKtI~~~Dl~~AV~~~e~ 88 (140)
T 2byk_A 37 LITNEVLFLMTKCTELFVRHLAGAAYTEEFGQ-----RPGEALKYEHLSQVVNKNKN 88 (140)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----CCSCEECHHHHHHHHHTCST
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCcccCHHHHHHHHhcCch
Confidence 69999999999999999999999999888 33 23668999999999997653
No 29
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=76.49 E-value=8.1 Score=31.94 Aligned_cols=61 Identities=11% Similarity=0.049 Sum_probs=49.9
Q ss_pred HHHHHHHHHhC---CCCChhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccchHhhHHHHHHhC
Q 036514 239 KRLEKKLEMEG---LKVSVDCANLLNNGLDVFMKRLIKPCLELAGSRSGHKHSSFSASILDFQVATELN 304 (328)
Q Consensus 239 ~RM~~ia~e~G---LgVs~~ca~lLn~aLd~yLK~LI~s~i~l~~~R~~~~~~~~~~Sl~Df~~amEln 304 (328)
.|+..|+.+.+ ..|+.|+..+|..+++.|+..|-....+.+... .+..|+-.|+..||+-.
T Consensus 13 A~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~-----kRKTI~~~Dv~~Al~~l 76 (128)
T 2byk_B 13 AVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQ-----NHKTITAKDILQTLTEL 76 (128)
T ss_dssp SHHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----TCSSCCHHHHHHHHHHT
T ss_pred HHHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCCccCHHHHHHHHHHc
Confidence 45666666544 279999999999999999999999999988642 35679999999999864
No 30
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=73.86 E-value=7.6 Score=31.97 Aligned_cols=62 Identities=11% Similarity=0.089 Sum_probs=51.6
Q ss_pred HHHHHHHHHh-CC-CCChhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccchHhhHHHHHHhCC
Q 036514 239 KRLEKKLEME-GL-KVSVDCANLLNNGLDVFMKRLIKPCLELAGSRSGHKHSSFSASILDFQVATELNP 305 (328)
Q Consensus 239 ~RM~~ia~e~-GL-gVs~~ca~lLn~aLd~yLK~LI~s~i~l~~~R~~~~~~~~~~Sl~Df~~amElnP 305 (328)
.|+..++.+. +- -|+.+++.+|.-.||.+.-+|++-+...|+- +....|+-+|++.|+.-+.
T Consensus 27 ~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~-----~k~krItp~hi~lAI~nDe 90 (123)
T 2nqb_C 27 GRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARD-----NKKTRIIPRHLQLAIRNDE 90 (123)
T ss_dssp HHHHHHHHHTTSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHH-----TTCSEECHHHHHHHHHTSH
T ss_pred HHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCccccHHHHHHHHhccH
Confidence 6777888775 34 6999999999999999999999999988875 2356799999999987544
No 31
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=72.53 E-value=8.3 Score=32.91 Aligned_cols=62 Identities=13% Similarity=0.126 Sum_probs=51.8
Q ss_pred HHHHHHHHHhCC--CCChhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccchHhhHHHHHHhCC
Q 036514 239 KRLEKKLEMEGL--KVSVDCANLLNNGLDVFMKRLIKPCLELAGSRSGHKHSSFSASILDFQVATELNP 305 (328)
Q Consensus 239 ~RM~~ia~e~GL--gVs~~ca~lLn~aLd~yLK~LI~s~i~l~~~R~~~~~~~~~~Sl~Df~~amElnP 305 (328)
.|+..++.+.-. -|+.+++.+|.-.||++.-+|++-+...|+- +....|+-+|++.|+.-+.
T Consensus 48 grI~R~LK~~~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~-----~krkrItprhI~lAI~nDe 111 (149)
T 2f8n_K 48 GRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARD-----NKKTRIIPRHLQLAIRNDE 111 (149)
T ss_dssp HHHHHHHHHTTSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHH-----TTCSEECHHHHHHHHHHSH
T ss_pred HHHHHHHHccccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCcCcHHHHHHHHhccH
Confidence 678888877534 6999999999999999999999999988875 2356799999999987554
No 32
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=70.63 E-value=9.8 Score=31.56 Aligned_cols=62 Identities=13% Similarity=0.096 Sum_probs=51.6
Q ss_pred HHHHHHHHHh-CC-CCChhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccchHhhHHHHHHhCC
Q 036514 239 KRLEKKLEME-GL-KVSVDCANLLNNGLDVFMKRLIKPCLELAGSRSGHKHSSFSASILDFQVATELNP 305 (328)
Q Consensus 239 ~RM~~ia~e~-GL-gVs~~ca~lLn~aLd~yLK~LI~s~i~l~~~R~~~~~~~~~~Sl~Df~~amElnP 305 (328)
.|+..++.+. +- -|+.+++-+|.-.||.+.-+|++-+...|+- +....|+-+|++.|+.-+.
T Consensus 29 ~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~-----~k~krItp~hi~lAI~nDe 92 (129)
T 1tzy_A 29 GRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARD-----NKKTRIIPRHLQLAIRNDE 92 (129)
T ss_dssp HHHHHHHHHTTSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHH-----TTCSEECHHHHHHHHHTSH
T ss_pred HHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCeEcHHHHHHHHhccH
Confidence 6778888774 44 6999999999999999999999999988875 2356799999999987544
No 33
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=69.87 E-value=22 Score=32.52 Aligned_cols=71 Identities=15% Similarity=0.100 Sum_probs=58.2
Q ss_pred hCCCCCHHhHHHHHHHHHHHhCCCCChhHHHHHHHHHH----HHHHHHHHHHHHHhhccCCCCCCCccchHhhHHHHHHh
Q 036514 228 HGELPDAYSLRKRLEKKLEMEGLKVSVDCANLLNNGLD----VFMKRLIKPCLELAGSRSGHKHSSFSASILDFQVATEL 303 (328)
Q Consensus 228 sgeLPDt~sL~~RM~~ia~e~GLgVs~~ca~lLn~aLd----~yLK~LI~s~i~l~~~R~~~~~~~~~~Sl~Df~~amEl 303 (328)
.-.-|+.+.+...+...+...|+.++.++++.+....+ .++.++++.++..|..+ ....|+..|++.|++.
T Consensus 255 ~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~-----~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 255 STTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKR-----KGTEVQVDDIKRVYSL 329 (368)
T ss_dssp EECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT-----TCSSBCHHHHHHHHHH
T ss_pred EecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh-----CCCCCCHHHHHHHHHH
Confidence 34456889999999999999999999999998887665 47888888888877543 2457999999999986
No 34
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=69.18 E-value=8.2 Score=32.12 Aligned_cols=62 Identities=11% Similarity=0.085 Sum_probs=51.2
Q ss_pred HHHHHHHHHh-CC-CCChhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccchHhhHHHHHHhCC
Q 036514 239 KRLEKKLEME-GL-KVSVDCANLLNNGLDVFMKRLIKPCLELAGSRSGHKHSSFSASILDFQVATELNP 305 (328)
Q Consensus 239 ~RM~~ia~e~-GL-gVs~~ca~lLn~aLd~yLK~LI~s~i~l~~~R~~~~~~~~~~Sl~Df~~amElnP 305 (328)
.|+..++.+. +- -|+.+++-+|.-.||.+.-+|++-+...|+-. ....|+-+|++.|+.-+.
T Consensus 29 ~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~-----k~krItp~hI~lAI~nDe 92 (131)
T 1id3_C 29 GRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDN-----KKTRIIPRHLQLAIRNDD 92 (131)
T ss_dssp HHHHHHHHTTCSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHT-----TCSEECHHHHHHHHHTCH
T ss_pred HHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhc-----CCceEcHHHHHHHHhccH
Confidence 5777888764 33 69999999999999999999999999888752 356799999999987543
No 35
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=68.70 E-value=10 Score=33.27 Aligned_cols=49 Identities=20% Similarity=0.240 Sum_probs=43.8
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccchHhhHHHHHHh
Q 036514 250 LKVSVDCANLLNNGLDVFMKRLIKPCLELAGSRSGHKHSSFSASILDFQVATEL 303 (328)
Q Consensus 250 LgVs~~ca~lLn~aLd~yLK~LI~s~i~l~~~R~~~~~~~~~~Sl~Df~~amEl 303 (328)
+|+|.++.+.||.-+...+.+|....-.++++. ....+|.+|+..|+.+
T Consensus 20 ~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~-----~r~Tit~~eIq~Avrl 68 (192)
T 2jss_A 20 TGISQKSMSILNSFVNDIFERIATEASKLAAYN-----KKSTISAREIQTAVRL 68 (192)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----CCCSCCHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCCCCCHHHHHHHHHH
Confidence 589999999999999999999999999999873 3557999999999985
No 36
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=65.92 E-value=18 Score=30.26 Aligned_cols=68 Identities=13% Similarity=0.072 Sum_probs=51.2
Q ss_pred CCCCHHhHHHHHHHHHHHhCCCCChhHHHHHHHHHH---HHHHHHHHHHHHHhhccCCCCCCCccchHhhHHHHHHh
Q 036514 230 ELPDAYSLRKRLEKKLEMEGLKVSVDCANLLNNGLD---VFMKRLIKPCLELAGSRSGHKHSSFSASILDFQVATEL 303 (328)
Q Consensus 230 eLPDt~sL~~RM~~ia~e~GLgVs~~ca~lLn~aLd---~yLK~LI~s~i~l~~~R~~~~~~~~~~Sl~Df~~amEl 303 (328)
..||.+.+...+...+...|+.++.++++.|..... ..|+++|+.+...+... ...|++.|++.++++
T Consensus 172 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~a~~~------~~~It~~~v~~~l~~ 242 (242)
T 3bos_A 172 QPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMARDLRTLFDVLDRLDKASMVH------QRKLTIPFVKEMLRL 242 (242)
T ss_dssp CCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH------TCCCCHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHh------CCCCcHHHHHHHhhC
Confidence 457888899999999999999999999998887665 35566666665555322 224999999998863
No 37
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=63.71 E-value=18 Score=29.94 Aligned_cols=63 Identities=11% Similarity=0.090 Sum_probs=52.8
Q ss_pred HHHHHHHHHhCC---CCChhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccchHhhHHHHHHhCCc
Q 036514 239 KRLEKKLEMEGL---KVSVDCANLLNNGLDVFMKRLIKPCLELAGSRSGHKHSSFSASILDFQVATELNPQ 306 (328)
Q Consensus 239 ~RM~~ia~e~GL---gVs~~ca~lLn~aLd~yLK~LI~s~i~l~~~R~~~~~~~~~~Sl~Df~~amElnP~ 306 (328)
.|+..++.+.+. -|+.+++-+|.-.||.+.-+|++-+...|+- +....|+-+|++.|+.-+..
T Consensus 31 ~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~-----~k~krItprhi~lAI~nDeE 96 (128)
T 1f66_C 31 GRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKD-----LKVKRITPRHLQLAIRGDEE 96 (128)
T ss_dssp HHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHT-----TTCSEECHHHHHHHHHHSHH
T ss_pred HHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCeEcHHHHHHHHhccHH
Confidence 688888888884 4999999999999999999999999888764 23567999999999876543
No 38
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=60.50 E-value=37 Score=29.71 Aligned_cols=65 Identities=17% Similarity=0.165 Sum_probs=51.8
Q ss_pred hCCCCCHHhHHHHHHHHHHHhC--CCCChhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccchHhhHHHHHH
Q 036514 228 HGELPDAYSLRKRLEKKLEMEG--LKVSVDCANLLNNGLDVFMKRLIKPCLELAGSRSGHKHSSFSASILDFQVATE 302 (328)
Q Consensus 228 sgeLPDt~sL~~RM~~ia~e~G--LgVs~~ca~lLn~aLd~yLK~LI~s~i~l~~~R~~~~~~~~~~Sl~Df~~amE 302 (328)
..+||- ..+..|+.+.+ ..|+.|+..+|..++..|+.-|-....+.+.. .++.+|+-.|+..||+
T Consensus 13 D~~LP~-----A~V~RImK~alp~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~-----~~RKTI~~eDVl~Al~ 79 (179)
T 1jfi_B 13 DLTIPR-----AAINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNK-----SEKKTISPEHVIQALE 79 (179)
T ss_dssp CCCCCH-----HHHHHHHHHHSTTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----TTCSSBCHHHHHHHHH
T ss_pred hhhcCH-----HHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCcCCHHHHHHHHH
Confidence 345663 45556666654 58999999999999999999999999998864 2356799999999998
No 39
>1nla_A Transcriptional repressor ARC; 3(10) helix, beta-ribbon, beta-sheet, structural switching; NMR {Enterobacteria phage P22} SCOP: a.43.1.1
Probab=52.39 E-value=16 Score=26.79 Aligned_cols=33 Identities=12% Similarity=0.051 Sum_probs=29.0
Q ss_pred HhHHHHHHHHHHHhCCCCChhHHHHHHHHHHHH
Q 036514 235 YSLRKRLEKKLEMEGLKVSVDCANLLNNGLDVF 267 (328)
Q Consensus 235 ~sL~~RM~~ia~e~GLgVs~~ca~lLn~aLd~y 267 (328)
..|+.++...|.++|..++.+++..|..+++.+
T Consensus 16 ~eLh~~l~~~A~~~GrSlN~~Iv~~L~~~l~~~ 48 (64)
T 1nla_A 16 REVLDLVRKVAEENGRSVNSEIYQRVMESFKKE 48 (64)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcc
Confidence 579999999999999999999998888877654
No 40
>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus}
Probab=51.23 E-value=23 Score=26.53 Aligned_cols=49 Identities=14% Similarity=0.297 Sum_probs=37.5
Q ss_pred HHHHHhC--CccHHHHHHHHHHHHhccCCHHHHHHHHHhhcCCCcccccHHHHHHH
Q 036514 18 HIERKLG--AAKSDKYFSLLTRYLSLKISKSEFDRLCIGTIGRENVRLHNRLLRSI 71 (328)
Q Consensus 18 ~L~~~LG--~~~~~~Y~~~l~~fl~gklsk~Efd~~~~~~L~~e~i~LHN~lilsI 71 (328)
+++.+.. |+....+-+.|+.|-.++++..++-.++..++.. |..||...
T Consensus 13 ~VK~~F~~~p~~Y~~FL~im~~~k~~~~~~~~v~~rv~~Lf~~-----hpdLi~gF 63 (77)
T 2czy_A 13 QVKIRFGSDPATYNGFLEIMKEFKSQSIDTPGVIRRVSQLFHE-----HPDLIVGF 63 (77)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTTT-----CHHHHHHH
T ss_pred HHHHHHccChHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHcC-----CHHHHHHH
Confidence 3444455 3455566678888999999999999999999974 88888764
No 41
>1baz_A ARC repressor; transcription regulation; 1.90A {Enterobacteria phage P22} SCOP: a.43.1.1 PDB: 1bdv_A* 1arq_A 1arr_A 1bdt_A* 1par_A* 1myk_A 1qtg_A 1b28_A 1myl_A
Probab=49.51 E-value=17 Score=25.15 Aligned_cols=31 Identities=13% Similarity=0.114 Sum_probs=26.9
Q ss_pred HhHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 036514 235 YSLRKRLEKKLEMEGLKVSVDCANLLNNGLD 265 (328)
Q Consensus 235 ~sL~~RM~~ia~e~GLgVs~~ca~lLn~aLd 265 (328)
+.|+.++...|.++|..++..+..+|..+|+
T Consensus 16 ~eL~~~l~~~A~~~grS~N~~i~~~L~~~l~ 46 (53)
T 1baz_A 16 REVLDLVRKVAEENGRSVNSEIYQRVMESFK 46 (53)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 5799999999999999998888888777664
No 42
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=47.84 E-value=43 Score=25.32 Aligned_cols=49 Identities=14% Similarity=0.144 Sum_probs=43.0
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccchHhhHHHHHHh
Q 036514 250 LKVSVDCANLLNNGLDVFMKRLIKPCLELAGSRSGHKHSSFSASILDFQVATEL 303 (328)
Q Consensus 250 LgVs~~ca~lLn~aLd~yLK~LI~s~i~l~~~R~~~~~~~~~~Sl~Df~~amEl 303 (328)
+-++.++...|..|.|.||-.|.+-+...|.- .++..+...|++.|+.+
T Consensus 24 ~R~q~~Al~aLQea~Eaylv~lfeda~l~A~H-----AkRvTi~~kDiqLa~ri 72 (77)
T 2hue_B 24 LRFQSSAVMALQEASEAYLVALFEDTNLCAIH-----AKRVTIMPKDIQLARRI 72 (77)
T ss_dssp CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----TTCSEECHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCccCcHhhHHHHHHH
Confidence 47999999999999999999999999988864 34677889999999865
No 43
>3qoq_A Alginate and motility regulator Z; protein-DNA complex, ribbon-helix-helix; HET: DNA; 3.10A {Pseudomonas aeruginosa}
Probab=45.41 E-value=17 Score=27.04 Aligned_cols=34 Identities=15% Similarity=0.224 Sum_probs=28.9
Q ss_pred CCCCHHhHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 036514 230 ELPDAYSLRKRLEKKLEMEGLKVSVDCANLLNNGLD 265 (328)
Q Consensus 230 eLPDt~sL~~RM~~ia~e~GLgVs~~ca~lLn~aLd 265 (328)
.+| +.|+.++...|.++|..+..+++..|..+++
T Consensus 25 RlP--~eL~~~L~~~A~~~grSlNaeIv~~Le~sl~ 58 (69)
T 3qoq_A 25 RLP--EGMREQIAEVARSHHRSMNSEIIARLEQSLL 58 (69)
T ss_dssp ECC--TTHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred ECC--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 455 4799999999999999999998888877765
No 44
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=42.00 E-value=30 Score=23.09 Aligned_cols=32 Identities=9% Similarity=0.228 Sum_probs=26.1
Q ss_pred HhHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHH
Q 036514 235 YSLRKRLEKKLEMEGLKVSVDCANLLNNGLDVFMKR 270 (328)
Q Consensus 235 ~sL~~RM~~ia~e~GLgVs~~ca~lLn~aLd~yLK~ 270 (328)
+.|..++...|.+.|+.. .+++..|++.||.+
T Consensus 18 ~el~~~l~~~a~~~g~s~----s~~ir~ai~~~l~~ 49 (55)
T 2k9i_A 18 QEWHDRLMEIAKEKNLTL----SDVCRLAIKEYLDN 49 (55)
T ss_dssp HHHHHHHHHHHHHHTCCH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCH----HHHHHHHHHHHHHH
Confidence 578999999999999744 45888888888865
No 45
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=41.56 E-value=51 Score=28.76 Aligned_cols=64 Identities=14% Similarity=0.115 Sum_probs=51.5
Q ss_pred HHHHHHHHHh-CC--CCChhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccchHhhHHHHHHhCCcc
Q 036514 239 KRLEKKLEME-GL--KVSVDCANLLNNGLDVFMKRLIKPCLELAGSRSGHKHSSFSASILDFQVATELNPQI 307 (328)
Q Consensus 239 ~RM~~ia~e~-GL--gVs~~ca~lLn~aLd~yLK~LI~s~i~l~~~R~~~~~~~~~~Sl~Df~~amElnP~l 307 (328)
.|+..++.+. +- -|+.+++.+|.-.||.+.-+|++-+...|+.. +...|+-+|++.|+.-+..+
T Consensus 109 ~ri~R~lk~~~~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~-----~~~~I~p~~i~lAi~nD~eL 175 (192)
T 2jss_A 109 GRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDL-----KVKRITPRHLQLAIRGDDEL 175 (192)
T ss_dssp HHHHHHHHHTTCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHH-----TCSSCCHHHHHHHHHTSHHH
T ss_pred HHHHHHHHhcCccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCCccCHHHHHHHHhccHHH
Confidence 5777777775 32 59999999999999999999999998887752 34569999999999765443
No 46
>2cr7_A Paired amphipathic helix protein SIN3B; paired amphipathic helix repeat, transcriptional repressor, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rmr_A 2rms_A
Probab=41.00 E-value=29 Score=26.13 Aligned_cols=49 Identities=14% Similarity=0.275 Sum_probs=37.2
Q ss_pred HHHHHhC--CccHHHHHHHHHHHHhccCCHHHHHHHHHhhcCCCcccccHHHHHHH
Q 036514 18 HIERKLG--AAKSDKYFSLLTRYLSLKISKSEFDRLCIGTIGRENVRLHNRLLRSI 71 (328)
Q Consensus 18 ~L~~~LG--~~~~~~Y~~~l~~fl~gklsk~Efd~~~~~~L~~e~i~LHN~lilsI 71 (328)
+++.+.. |+....+-+.|+.|-.++++..++-.++..+|. =|..||...
T Consensus 19 ~VK~rF~~~p~~Y~~FL~im~~fk~~~~~~~~v~~rV~~Lf~-----~hpdLi~gF 69 (80)
T 2cr7_A 19 QVKIRFGSDPATYNGFLEIMKEFKSQSIDTPGVIRRVSQLFH-----EHPDLIVGF 69 (80)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHGG-----GCHHHHHHH
T ss_pred HHHHHHccChHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHc-----CCHHHHHHH
Confidence 3444555 345556678889999999999999999999987 377887763
No 47
>2ld7_B Paired amphipathic helix protein SIN3A; transcription; NMR {Mus musculus}
Probab=38.68 E-value=33 Score=25.62 Aligned_cols=48 Identities=15% Similarity=0.223 Sum_probs=36.1
Q ss_pred cHHHHHHHHHHHhCC-ccHHHHHHHHHHHHhccCCHHHHHHHHHhhcCC
Q 036514 11 DILEIKSHIERKLGA-AKSDKYFSLLTRYLSLKISKSEFDRLCIGTIGR 58 (328)
Q Consensus 11 Dl~~lk~~L~~~LG~-~~~~~Y~~~l~~fl~gklsk~Efd~~~~~~L~~ 58 (328)
|-..--.+.+++|+. +.+..+-..|..|=.+.|+|.|+-.++..+||+
T Consensus 10 de~~Ff~kVK~~l~~~~~Y~eFLk~lnlf~q~~Id~~eLv~~V~~~lg~ 58 (75)
T 2ld7_B 10 TESLFFDKVRKALRSAEAYENFLRCLVIFNQEVISRAELVQLVSPFLGK 58 (75)
T ss_dssp HHHHHHHHHHHHHCSHHHHHHHHHHHHHHHTTCSCHHHHHHHTHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcCHHHHHHHHHHHHcc
Confidence 334445566777862 445556667888999999999999999999983
No 48
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=37.47 E-value=83 Score=23.99 Aligned_cols=50 Identities=14% Similarity=0.158 Sum_probs=43.1
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccchHhhHHHHHHhC
Q 036514 250 LKVSVDCANLLNNGLDVFMKRLIKPCLELAGSRSGHKHSSFSASILDFQVATELN 304 (328)
Q Consensus 250 LgVs~~ca~lLn~aLd~yLK~LI~s~i~l~~~R~~~~~~~~~~Sl~Df~~amEln 304 (328)
+-++.++...|..|.|.||=.|.+.+...|-- .++..|-..|++.|.-+-
T Consensus 26 ~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiH-----AkRvTi~~kDiqLa~rir 75 (82)
T 3nqj_A 26 FNWQAQALLALQEAAEAFLVHLFEDAYLLTLH-----AGRVTLFPKDVQLARRIR 75 (82)
T ss_dssp CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----TTCSSBCHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCccCcHHHHHHHHHHc
Confidence 47999999999999999999999999888764 346678899999998764
No 49
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=36.73 E-value=1.1e+02 Score=24.68 Aligned_cols=65 Identities=18% Similarity=0.046 Sum_probs=45.5
Q ss_pred CCCHHhHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccchHhhHHHHHH
Q 036514 231 LPDAYSLRKRLEKKLEMEGLKVSVDCANLLNNGLDVFMKRLIKPCLELAGSRSGHKHSSFSASILDFQVATE 302 (328)
Q Consensus 231 LPDt~sL~~RM~~ia~e~GLgVs~~ca~lLn~aLd~yLK~LI~s~i~l~~~R~~~~~~~~~~Sl~Df~~amE 302 (328)
-|+.+.+...+...+...|+.++.++++.+.....-.+..++..+-..+..- ..|+..|++.++.
T Consensus 160 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~-------~~I~~~~v~~~~~ 224 (226)
T 2chg_A 160 PVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIG-------EVVDADTIYQITA 224 (226)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-------SCBCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-------ceecHHHHHHHhc
Confidence 3567778888888898899999999988887665544444444333333221 3689999998875
No 50
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=35.34 E-value=46 Score=28.50 Aligned_cols=50 Identities=14% Similarity=0.158 Sum_probs=42.7
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccchHhhHHHHHHhC
Q 036514 250 LKVSVDCANLLNNGLDVFMKRLIKPCLELAGSRSGHKHSSFSASILDFQVATELN 304 (328)
Q Consensus 250 LgVs~~ca~lLn~aLd~yLK~LI~s~i~l~~~R~~~~~~~~~~Sl~Df~~amEln 304 (328)
+-++.+++..|..|.|.||=.|.+.+...|-- .+...|-..|++.|+-+-
T Consensus 100 lRfqs~Al~ALQEAaEayLV~LFEdanLcAiH-----AkRVTIm~kDIqLArrIr 149 (156)
T 3r45_A 100 FNWQAQALLALQEAAEAFLVHLFEDAYLLTLH-----AGRVTLFPKDVQLARRIR 149 (156)
T ss_dssp CEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HTCSEECHHHHHHHHHHH
T ss_pred ceecHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCcccccHHHHHHHHHHc
Confidence 47899999999999999999999999888763 246678899999998763
No 51
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=35.05 E-value=72 Score=25.20 Aligned_cols=50 Identities=16% Similarity=0.139 Sum_probs=42.5
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccchHhhHHHHHHh
Q 036514 249 GLKVSVDCANLLNNGLDVFMKRLIKPCLELAGSRSGHKHSSFSASILDFQVATEL 303 (328)
Q Consensus 249 GLgVs~~ca~lLn~aLd~yLK~LI~s~i~l~~~R~~~~~~~~~~Sl~Df~~amEl 303 (328)
.+-++.++...|..|.|.||=.|.+-+.-.|-- .++..|-..|++.|+.+
T Consensus 50 ~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~H-----AkRvTi~~kDiqLa~ri 99 (100)
T 2yfv_A 50 PLRWQSMAIMALQEASEAYLVGLLEHTNLLALH-----AKRITIMRKDMQLARRI 99 (100)
T ss_dssp -CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----TTCSEECHHHHHHHHHC
T ss_pred hhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCccCCHHHHHHHHHh
Confidence 457999999999999999999999999888865 34677889999999754
No 52
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=34.28 E-value=76 Score=26.49 Aligned_cols=49 Identities=14% Similarity=0.142 Sum_probs=43.2
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccchHhhHHHHHHh
Q 036514 250 LKVSVDCANLLNNGLDVFMKRLIKPCLELAGSRSGHKHSSFSASILDFQVATEL 303 (328)
Q Consensus 250 LgVs~~ca~lLn~aLd~yLK~LI~s~i~l~~~R~~~~~~~~~~Sl~Df~~amEl 303 (328)
+-++.++...|..|.|.||=.|.+-+...|-. .+...|-..|++.|+.+
T Consensus 83 ~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~H-----AkRvTi~~kDiqLa~ri 131 (136)
T 1tzy_C 83 LRFQSSAVMALQEASEAYLVGLFEDTNLCAIH-----AKRVTIMPKDIQLARRI 131 (136)
T ss_dssp CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----TTCSEECHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCccCcHHhHHHHHHH
Confidence 47999999999999999999999999988864 34678889999999865
No 53
>2v6z_M DNA polymerase epsilon subunit 2; DNA replication, DPOE2, transferase, AAA protein family; HET: DNA; NMR {Homo sapiens}
Probab=31.29 E-value=1.2e+02 Score=23.85 Aligned_cols=64 Identities=16% Similarity=0.174 Sum_probs=45.2
Q ss_pred HhHHHHHHHHHHHhCCCCChhHHHHHHHHHHHH----HHHHHHHHHHHhhccCCCCCCCccchHhhHHHHH
Q 036514 235 YSLRKRLEKKLEMEGLKVSVDCANLLNNGLDVF----MKRLIKPCLELAGSRSGHKHSSFSASILDFQVAT 301 (328)
Q Consensus 235 ~sL~~RM~~ia~e~GLgVs~~ca~lLn~aLd~y----LK~LI~s~i~l~~~R~~~~~~~~~~Sl~Df~~am 301 (328)
.-|++++...-...||.+..|+..++...|..+ +...|..+++.+....- .+.-|+-..+..|+
T Consensus 28 ~rlrk~I~k~FKL~Gl~Lr~dA~~~L~~~L~~~~~~e~e~~L~~Iid~lqkq~L---sS~~Vdk~~VE~AV 95 (99)
T 2v6z_M 28 ERLRSRALSAFKLRGLLLRGEAIKYLTEALQSISELELEDKLEKIINAVEKQPL---SSNMIERSVVEAAV 95 (99)
T ss_dssp HHHHHHHHHHHHHTTCEECHHHHHHHHHHTTTSCTTTHHHHHHHHHHHHTTSCC---SSSEECHHHHHHHH
T ss_pred HHHHHHHHHHhhhcceeecHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcC---ccccccHHHHHHHH
Confidence 568999999999999999999999998877555 45667777777653321 24444444444444
No 54
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=31.28 E-value=1e+02 Score=25.93 Aligned_cols=52 Identities=13% Similarity=0.142 Sum_probs=44.5
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccchHhhHHHHHHhCC
Q 036514 249 GLKVSVDCANLLNNGLDVFMKRLIKPCLELAGSRSGHKHSSFSASILDFQVATELNP 305 (328)
Q Consensus 249 GLgVs~~ca~lLn~aLd~yLK~LI~s~i~l~~~R~~~~~~~~~~Sl~Df~~amElnP 305 (328)
.+-++.+++..|..|.|.||=.|.+.+...|-- .+...|-..|++.|+-+-.
T Consensus 83 ~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiH-----AkRVTIm~kDiqLArrirg 134 (140)
T 3nqu_A 83 DFNWQAQALLALQEAAEAFLVHLFEDAYLLTLH-----AGRVTLFPKDVQLARRIRG 134 (140)
T ss_dssp CCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----TTCSEECHHHHHHHHHHHC
T ss_pred cceecHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCcccccHHHHHHHHHhcc
Confidence 357999999999999999999999999888764 3467789999999987743
No 55
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5
Probab=30.49 E-value=97 Score=20.08 Aligned_cols=49 Identities=8% Similarity=0.009 Sum_probs=30.0
Q ss_pred ccccccHHHHHHHHHHHhCCccHHHHHHHHHHHH----hccCCHHHHHHHHHhh
Q 036514 6 HFMRLDILEIKSHIERKLGAAKSDKYFSLLTRYL----SLKISKSEFDRLCIGT 55 (328)
Q Consensus 6 ~~~RiDl~~lk~~L~~~LG~~~~~~Y~~~l~~fl----~gklsk~Efd~~~~~~ 55 (328)
....|+..+++..+.. +|..-.......+-.-+ .|+|+.+||-..+...
T Consensus 14 ~~G~i~~~el~~~l~~-~~~~~~~~~~~~~~~~~D~~~dg~i~~~ef~~~~~~~ 66 (67)
T 1tiz_A 14 KDGKLSLDEFREVALA-FSPYFTQEDIVKFFEEIDVDGNGELNADEFTSCIEKM 66 (67)
T ss_dssp SSSCEEHHHHHHHHHH-TCTTSCHHHHHHHHHHHCCSSSSEECHHHHHHHHHTC
T ss_pred CCCcCcHHHHHHHHHH-hCCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 3567888888876654 67433333333333333 5678888888776654
No 56
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=28.57 E-value=2.3e+02 Score=27.11 Aligned_cols=73 Identities=18% Similarity=0.157 Sum_probs=55.6
Q ss_pred hCCCCCHHhHHHHHHHHHHHhCCCCChhHHHHHHHHH-H---HHHHHHHHHHHHHhhccCCCCCCCccchHhhHHHHHHh
Q 036514 228 HGELPDAYSLRKRLEKKLEMEGLKVSVDCANLLNNGL-D---VFMKRLIKPCLELAGSRSGHKHSSFSASILDFQVATEL 303 (328)
Q Consensus 228 sgeLPDt~sL~~RM~~ia~e~GLgVs~~ca~lLn~aL-d---~yLK~LI~s~i~l~~~R~~~~~~~~~~Sl~Df~~amEl 303 (328)
.-.-++.+.+...+...|.++|..++.++++++...- + .+.-+++..+.+.|..+. ...|+..|++.|+++
T Consensus 362 ~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~-----~~~v~~~~v~~~~~~ 436 (456)
T 2c9o_A 362 RTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKING-----KDSIEKEHVEEISEL 436 (456)
T ss_dssp ECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTT-----CSSBCHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcC-----CCccCHHHHHHHHHH
Confidence 4455688999999999999999999999988876543 3 356677777777765422 456899999999987
Q ss_pred CC
Q 036514 304 NP 305 (328)
Q Consensus 304 nP 305 (328)
-.
T Consensus 437 ~~ 438 (456)
T 2c9o_A 437 FY 438 (456)
T ss_dssp SC
T ss_pred hc
Confidence 43
No 57
>2l9s_A PHD finger protein 12; protein-peptide complex, amphipathic helix motif, transcript; NMR {Homo sapiens} PDB: 2lkm_A
Probab=28.32 E-value=23 Score=24.27 Aligned_cols=13 Identities=31% Similarity=0.376 Sum_probs=10.7
Q ss_pred HHHHHHhCCcccc
Q 036514 297 FQVATELNPQILG 309 (328)
Q Consensus 297 f~~amElnP~lLg 309 (328)
+++||++||++..
T Consensus 18 i~aA~~~NP~qF~ 30 (45)
T 2l9s_A 18 IAAAMERNPTQFQ 30 (45)
T ss_dssp HHHHHHSSCCCSS
T ss_pred HHHHHHhChhhhc
Confidence 5789999999753
No 58
>1u9p_A PARC; unknown function; 1.90A {Escherichia coli} SCOP: a.43.1.1
Probab=27.09 E-value=57 Score=26.77 Aligned_cols=34 Identities=12% Similarity=0.015 Sum_probs=30.0
Q ss_pred HhHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHH
Q 036514 235 YSLRKRLEKKLEMEGLKVSVDCANLLNNGLDVFM 268 (328)
Q Consensus 235 ~sL~~RM~~ia~e~GLgVs~~ca~lLn~aLd~yL 268 (328)
..|+.++...|.++|..++.+++..|..+++.=-
T Consensus 27 ~eLh~~La~~Ak~eGrSLN~eIv~~Le~sl~~~~ 60 (120)
T 1u9p_A 27 REVLDLVRKVAEENGRSVNSEIYQRVMESFKKEG 60 (120)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccC
Confidence 5799999999999999999999999988876543
No 59
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=26.15 E-value=1e+02 Score=27.13 Aligned_cols=76 Identities=16% Similarity=0.104 Sum_probs=46.7
Q ss_pred hCCCCCHHhHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHH----HHHHHHHHHHhhccCCCC-------CCCccchHhh
Q 036514 228 HGELPDAYSLRKRLEKKLEMEGLKVSVDCANLLNNGLDVFM----KRLIKPCLELAGSRSGHK-------HSSFSASILD 296 (328)
Q Consensus 228 sgeLPDt~sL~~RM~~ia~e~GLgVs~~ca~lLn~aLd~yL----K~LI~s~i~l~~~R~~~~-------~~~~~~Sl~D 296 (328)
...+||.+....-+...+...|..++.+..+.+....+-|. ++|+..+.-.+-.+..+. .....|++.|
T Consensus 185 ~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~i~~~d 264 (297)
T 3b9p_A 185 YVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRAITEQD 264 (297)
T ss_dssp ECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC--------CCCCCCCCHHH
T ss_pred EeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhcccccccccCCcCHHH
Confidence 34588887776666667777777788888888776665544 444443322221221111 2345799999
Q ss_pred HHHHHHh
Q 036514 297 FQVATEL 303 (328)
Q Consensus 297 f~~amEl 303 (328)
|..|+.-
T Consensus 265 ~~~a~~~ 271 (297)
T 3b9p_A 265 FHSSLKR 271 (297)
T ss_dssp HHHHTTS
T ss_pred HHHHHHH
Confidence 9999864
No 60
>1mnt_A MNT repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.43.1.1
Probab=25.63 E-value=61 Score=24.12 Aligned_cols=30 Identities=17% Similarity=0.405 Sum_probs=25.0
Q ss_pred HhHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 036514 235 YSLRKRLEKKLEMEGLKVSVDCANLLNNGL 264 (328)
Q Consensus 235 ~sL~~RM~~ia~e~GLgVs~~ca~lLn~aL 264 (328)
+.|+.++...|.++|.++...+..+|..++
T Consensus 13 ~eLh~~L~~~A~~~grSlN~~I~~~L~~al 42 (76)
T 1mnt_A 13 MEVREKLKFRAEANGRSMNSELLQIVQDAL 42 (76)
T ss_dssp HHHHHHHHHTHHHHTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 579999999999999988887777766654
No 61
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=24.99 E-value=1.4e+02 Score=24.21 Aligned_cols=65 Identities=15% Similarity=0.100 Sum_probs=43.4
Q ss_pred CCHHhHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccchHhhHHHHHH
Q 036514 232 PDAYSLRKRLEKKLEMEGLKVSVDCANLLNNGLDVFMKRLIKPCLELAGSRSGHKHSSFSASILDFQVATE 302 (328)
Q Consensus 232 PDt~sL~~RM~~ia~e~GLgVs~~ca~lLn~aLd~yLK~LI~s~i~l~~~R~~~~~~~~~~Sl~Df~~amE 302 (328)
++.+.+..-+...+..+|+.++.+.++.+....+-....++.-|-..+.+ . ...|+..|++.++.
T Consensus 185 l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~~~~-~-----~~~i~~~~v~~~~~ 249 (250)
T 1njg_A 185 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS-G-----DGQVSTQAVSAMLG 249 (250)
T ss_dssp CCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHTT-T-----TSSBCHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc-c-----CceecHHHHHHHhC
Confidence 56677888888888888998999888877766554444444333222211 1 12699999998864
No 62
>2kel_A SVTR protein, uncharacterized protein 56B; homodimer, ribbon-helix-helix, transcription repres; NMR {Sulfolobus islandicus rod-shaped virus}
Probab=24.81 E-value=1.2e+02 Score=21.23 Aligned_cols=32 Identities=13% Similarity=0.373 Sum_probs=25.9
Q ss_pred HhHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHH
Q 036514 235 YSLRKRLEKKLEMEGLKVSVDCANLLNNGLDVFMKR 270 (328)
Q Consensus 235 ~sL~~RM~~ia~e~GLgVs~~ca~lLn~aLd~yLK~ 270 (328)
..|+.|+...|..+|..+ -++++-||+.||.+
T Consensus 22 ~eLH~rlk~~Aa~~g~Sl----n~~i~eAL~~yl~~ 53 (56)
T 2kel_A 22 KDLKTRLKVYCAKNNLQL----TQAIEEAIKEYLQK 53 (56)
T ss_dssp HHHHHHHHHHHHHSCCCH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCH----HHHHHHHHHHHHHH
Confidence 579999999999999643 46788888888764
No 63
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A
Probab=23.85 E-value=94 Score=23.53 Aligned_cols=49 Identities=14% Similarity=0.212 Sum_probs=35.0
Q ss_pred HHHHHHhC--CccHHHHHHHHHHHHhcc----------CCHHHHHHHHHhhcCCCcccccHHHHHH
Q 036514 17 SHIERKLG--AAKSDKYFSLLTRYLSLK----------ISKSEFDRLCIGTIGRENVRLHNRLLRS 70 (328)
Q Consensus 17 ~~L~~~LG--~~~~~~Y~~~l~~fl~gk----------lsk~Efd~~~~~~L~~e~i~LHN~lils 70 (328)
..++.+.. |+....+-+.|+.|-.++ +|..|+-.++..+|.. |..||..
T Consensus 15 ~kVK~rF~~~p~~Y~~FL~il~~yk~~~~d~~~~~~~~~s~~eV~~~V~~Lf~~-----hpDLl~~ 75 (85)
T 1e91_A 15 NKIKTRFLDHPEIYRSFLEILHTYQKEQLHTKGRPFRGMSEEEVFTEVANLFRG-----QEDLLSE 75 (85)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHHHHHTTCSSSCCCSSCCCHHHHHHHHHHHTSS-----CHHHHHH
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHccccccccccccCcHHHHHHHHHHHHcc-----CHHHHHH
Confidence 34555665 344445567788888877 5789999999999974 7777766
No 64
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=21.50 E-value=3.9e+02 Score=23.66 Aligned_cols=67 Identities=19% Similarity=0.019 Sum_probs=47.3
Q ss_pred CCHHhHHHHHHHHHHH--hCCCCChhHHHHHHHHHH------HHHHHHHHHHHHHhhccCCCCCCCccchHhhHHHHHHh
Q 036514 232 PDAYSLRKRLEKKLEM--EGLKVSVDCANLLNNGLD------VFMKRLIKPCLELAGSRSGHKHSSFSASILDFQVATEL 303 (328)
Q Consensus 232 PDt~sL~~RM~~ia~e--~GLgVs~~ca~lLn~aLd------~yLK~LI~s~i~l~~~R~~~~~~~~~~Sl~Df~~amEl 303 (328)
++.+.+..-+...+.+ .+..++.++++.+..... .++.+++..+...+..+. ...+++.|++.|++.
T Consensus 201 l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~-----~~~i~~~~v~~a~~~ 275 (387)
T 2v1u_A 201 YTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRR-----EERVRREHVYSARAE 275 (387)
T ss_dssp CCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTT-----CSCBCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcC-----CCCcCHHHHHHHHHH
Confidence 4567777777777655 334789999998888777 577788888877775422 345788888877653
No 65
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=21.04 E-value=3e+02 Score=24.86 Aligned_cols=72 Identities=8% Similarity=0.042 Sum_probs=49.4
Q ss_pred hhCCCCCHHhHHHHHHHHHHHhCCCCChhHHHHHHHHHH---HHHHHHHHHHHHHhhccCCCCCCCccchHhhHHHHHHh
Q 036514 227 NHGELPDAYSLRKRLEKKLEMEGLKVSVDCANLLNNGLD---VFMKRLIKPCLELAGSRSGHKHSSFSASILDFQVATEL 303 (328)
Q Consensus 227 esgeLPDt~sL~~RM~~ia~e~GLgVs~~ca~lLn~aLd---~yLK~LI~s~i~l~~~R~~~~~~~~~~Sl~Df~~amEl 303 (328)
-.-..++.+.+..-+...+...|+.++.++++.+....+ ..+-++++.+.+.|..+.. ..|+..+++.|++.
T Consensus 175 ~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~~~~~-----~~It~~~v~~al~~ 249 (334)
T 1in4_A 175 LELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKA-----DRINTDIVLKTMEV 249 (334)
T ss_dssp EECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTC-----SSBCHHHHHHHHHH
T ss_pred eeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCC-----CCcCHHHHHHHHHH
Confidence 345778999999999999988898999999888765322 2344555555555543322 24677777777654
No 66
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=20.83 E-value=72 Score=29.80 Aligned_cols=75 Identities=15% Similarity=0.058 Sum_probs=52.4
Q ss_pred CCCCCHHhHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhh---ccC-CCC-------CCCccchHhhH
Q 036514 229 GELPDAYSLRKRLEKKLEMEGLKVSVDCANLLNNGLDVFMKRLIKPCLELAG---SRS-GHK-------HSSFSASILDF 297 (328)
Q Consensus 229 geLPDt~sL~~RM~~ia~e~GLgVs~~ca~lLn~aLd~yLK~LI~s~i~l~~---~R~-~~~-------~~~~~~Sl~Df 297 (328)
-.+||.+....-+..++..+|..++.+.++.|....+-|.-.-|...+..+. .|. .+. .....|++.||
T Consensus 279 i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~~~~~~~~~~~~~i~~~d~ 358 (389)
T 3vfd_A 279 VSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRLSDF 358 (389)
T ss_dssp CCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC---CCSSSCCCCCCHHHH
T ss_pred cCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhhhhhccchhhcCCcCHHHH
Confidence 5679999988888888888888888888888877776655544544444332 122 111 24567999999
Q ss_pred HHHHHh
Q 036514 298 QVATEL 303 (328)
Q Consensus 298 ~~amEl 303 (328)
..|++-
T Consensus 359 ~~al~~ 364 (389)
T 3vfd_A 359 TESLKK 364 (389)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999974
No 67
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=20.82 E-value=96 Score=28.14 Aligned_cols=35 Identities=11% Similarity=0.175 Sum_probs=30.6
Q ss_pred CCHHhHHHHHHHHHHHhCCCCChhHHHHHHHHHHH
Q 036514 232 PDAYSLRKRLEKKLEMEGLKVSVDCANLLNNGLDV 266 (328)
Q Consensus 232 PDt~sL~~RM~~ia~e~GLgVs~~ca~lLn~aLd~ 266 (328)
++...+..++..++.++|+.++.+++++|....+.
T Consensus 142 l~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g 176 (343)
T 1jr3_D 142 PEQAQLPRWVAARAKQLNLELDDAANQVLCYCYEG 176 (343)
T ss_dssp CCTTHHHHHHHHHHHHTTCEECHHHHHHHHHSSTT
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhch
Confidence 46778999999999999999999999999876654
No 68
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=20.71 E-value=1.9e+02 Score=26.59 Aligned_cols=81 Identities=17% Similarity=0.142 Sum_probs=50.1
Q ss_pred hCCCCCHHhHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhh---ccC-CC-------CCCCccchHhh
Q 036514 228 HGELPDAYSLRKRLEKKLEMEGLKVSVDCANLLNNGLDVFMKRLIKPCLELAG---SRS-GH-------KHSSFSASILD 296 (328)
Q Consensus 228 sgeLPDt~sL~~RM~~ia~e~GLgVs~~ca~lLn~aLd~yLK~LI~s~i~l~~---~R~-~~-------~~~~~~~Sl~D 296 (328)
.-.+||.+....-+...+...|+.++.+..+.|....+-|--.-|...+..|. .|. .+ ......|++.|
T Consensus 247 ~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~~~~~~~~~~~~i~~~d 326 (357)
T 3d8b_A 247 YIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADIATITPDQVRPIAYID 326 (357)
T ss_dssp ECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC----------CCCBCHHH
T ss_pred EeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhhhccccccccCCcCHHH
Confidence 35779988888777788877788888888887777666543333333333221 121 11 02356799999
Q ss_pred HHHHHH-hCCccc
Q 036514 297 FQVATE-LNPQIL 308 (328)
Q Consensus 297 f~~amE-lnP~lL 308 (328)
|..|++ ..|.+.
T Consensus 327 ~~~al~~~~ps~~ 339 (357)
T 3d8b_A 327 FENAFRTVRPSVS 339 (357)
T ss_dssp HHHHHHHHGGGCC
T ss_pred HHHHHHhcCCCCC
Confidence 999984 445443
Done!