Query 036516
Match_columns 709
No_of_seqs 324 out of 2088
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 02:49:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036516.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036516hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03159 cation/H(+) antiporte 100.0 8E-143 2E-147 1256.4 74.4 691 1-698 76-796 (832)
2 KOG1650 Predicted K+/H+-antipo 100.0 1E-118 2E-123 1036.1 47.6 692 1-698 56-766 (769)
3 PRK10669 putative cation:proto 100.0 2.1E-43 4.5E-48 404.3 37.6 344 1-364 39-389 (558)
4 PRK03562 glutathione-regulated 100.0 6.9E-43 1.5E-47 401.4 37.9 338 1-365 38-381 (621)
5 PRK03659 glutathione-regulated 100.0 2.9E-42 6.3E-47 395.7 38.3 340 1-365 38-378 (601)
6 COG0475 KefB Kef-type K+ trans 100.0 4.1E-41 8.9E-46 366.9 37.4 344 1-365 39-386 (397)
7 PRK05326 potassium/proton anti 100.0 4E-35 8.7E-40 335.8 29.6 345 1-364 39-388 (562)
8 TIGR00932 2a37 transporter, mo 100.0 4.1E-32 8.9E-37 284.1 27.0 246 1-268 25-273 (273)
9 PF00999 Na_H_Exchanger: Sodiu 100.0 5.9E-36 1.3E-40 328.3 -2.9 346 1-363 29-378 (380)
10 COG4651 RosB Kef-type K+ trans 100.0 3E-29 6.5E-34 248.0 24.3 343 1-364 39-388 (408)
11 TIGR00844 c_cpa1 na(+)/h(+) an 99.9 1.1E-21 2.3E-26 223.0 32.6 322 1-335 47-386 (810)
12 TIGR00831 a_cpa1 Na+/H+ antipo 99.9 9.7E-21 2.1E-25 214.4 31.1 319 31-363 51-408 (525)
13 COG0025 NhaP NhaP-type Na+/H+ 99.8 1E-17 2.2E-22 184.8 33.9 346 2-364 40-407 (429)
14 TIGR00840 b_cpa1 sodium/hydrog 99.8 3E-17 6.5E-22 185.9 30.6 328 29-363 66-416 (559)
15 PRK14853 nhaA pH-dependent sod 99.8 1.4E-16 3.1E-21 171.0 33.4 303 26-363 60-395 (423)
16 COG3263 NhaP-type Na+/H+ and K 99.8 5.1E-17 1.1E-21 169.2 21.0 330 2-351 41-373 (574)
17 PRK11175 universal stress prot 99.8 5.4E-17 1.2E-21 172.7 21.0 275 386-696 5-300 (305)
18 KOG4505 Na+/H+ antiporter [Ino 99.6 1.5E-13 3.3E-18 138.7 24.1 319 1-331 47-382 (467)
19 TIGR00773 NhaA Na+/H+ antiport 99.6 1.3E-13 2.9E-18 145.5 23.8 272 26-332 50-344 (373)
20 cd01988 Na_H_Antiporter_C The 99.5 9.1E-14 2E-18 128.3 13.2 131 386-534 1-131 (132)
21 PRK14856 nhaA pH-dependent sod 99.3 2.6E-10 5.6E-15 122.6 23.4 298 26-361 66-429 (438)
22 PRK15005 universal stress prot 99.3 1.8E-11 3.8E-16 115.1 12.9 137 386-534 4-143 (144)
23 PRK15456 universal stress prot 99.3 1.9E-11 4.2E-16 114.8 12.5 136 385-534 3-141 (142)
24 PRK09560 nhaA pH-dependent sod 99.3 5.1E-10 1.1E-14 118.6 24.0 272 26-332 57-353 (389)
25 cd01989 STK_N The N-terminal d 99.3 4.5E-11 9.8E-16 112.7 13.0 137 386-535 1-144 (146)
26 PRK09561 nhaA pH-dependent sod 99.3 8.7E-10 1.9E-14 116.6 23.6 272 26-332 57-351 (388)
27 KOG1965 Sodium/hydrogen exchan 99.3 1.5E-10 3.2E-15 127.0 18.0 319 38-363 108-454 (575)
28 PRK14854 nhaA pH-dependent sod 99.2 3.2E-09 6.9E-14 112.0 25.2 273 26-333 54-349 (383)
29 PRK14855 nhaA pH-dependent sod 99.2 3.5E-09 7.6E-14 113.5 25.4 267 26-333 61-384 (423)
30 PRK09982 universal stress prot 99.2 9.1E-11 2E-15 110.3 11.1 133 386-534 5-137 (142)
31 PRK15118 universal stress glob 99.2 1.8E-10 3.9E-15 108.3 11.5 134 385-535 4-138 (144)
32 cd01987 USP_OKCHK USP domain i 99.1 3.9E-10 8.4E-15 103.1 10.5 122 386-534 1-123 (124)
33 PF00582 Usp: Universal stress 99.1 2.6E-10 5.6E-15 105.2 9.0 134 385-534 3-139 (140)
34 PF06965 Na_H_antiport_1: Na+/ 99.1 6.8E-10 1.5E-14 117.5 12.2 276 26-336 53-355 (378)
35 PRK10116 universal stress prot 99.0 2.5E-09 5.4E-14 100.2 11.5 136 385-536 4-139 (142)
36 PRK11175 universal stress prot 99.0 3.3E-09 7.1E-14 112.9 11.8 144 384-539 152-303 (305)
37 COG3004 NhaA Na+/H+ antiporter 98.9 3.7E-07 8E-12 93.0 24.8 271 25-333 59-355 (390)
38 cd00293 USP_Like Usp: Universa 98.9 1.6E-08 3.4E-13 92.1 11.7 129 386-533 1-129 (130)
39 COG0589 UspA Universal stress 98.6 6.5E-07 1.4E-11 84.3 13.3 138 385-535 6-151 (154)
40 cd01988 Na_H_Antiporter_C The 98.3 1.1E-05 2.3E-10 74.1 12.6 129 554-695 1-132 (132)
41 cd01989 STK_N The N-terminal d 98.3 1.1E-05 2.4E-10 75.7 12.4 129 555-696 2-145 (146)
42 PF00582 Usp: Universal stress 98.0 3.9E-05 8.5E-10 70.2 9.4 128 553-695 3-140 (140)
43 PF03812 KdgT: 2-keto-3-deoxyg 97.9 0.0019 4.1E-08 66.9 21.2 122 1-125 12-140 (314)
44 PRK12460 2-keto-3-deoxyglucona 97.9 0.0025 5.5E-08 66.3 21.8 287 1-366 12-307 (312)
45 PRK15005 universal stress prot 97.9 0.00015 3.2E-09 67.9 11.6 129 553-695 3-144 (144)
46 PRK15118 universal stress glob 97.9 7.1E-05 1.5E-09 70.1 9.4 128 552-698 3-141 (144)
47 PRK10116 universal stress prot 97.8 9.5E-05 2.1E-09 69.0 8.8 128 552-695 3-138 (142)
48 KOG1966 Sodium/hydrogen exchan 97.8 0.00013 2.8E-09 80.8 10.6 317 39-363 109-448 (670)
49 cd01987 USP_OKCHK USP domain i 97.8 0.00013 2.8E-09 66.4 9.1 120 554-694 1-123 (124)
50 PRK12652 putative monovalent c 97.8 0.00011 2.4E-09 79.1 9.6 108 385-500 6-122 (357)
51 cd00293 USP_Like Usp: Universa 97.7 0.0003 6.5E-09 63.5 11.2 128 554-694 1-130 (130)
52 PRK09982 universal stress prot 97.7 0.00019 4.2E-09 67.2 10.1 39 552-590 3-41 (142)
53 PRK15456 universal stress prot 97.7 0.00084 1.8E-08 62.7 13.3 128 553-695 3-142 (142)
54 TIGR00793 kdgT 2-keto-3-deoxyg 97.2 0.025 5.3E-07 58.5 17.3 122 1-125 12-140 (314)
55 PRK12652 putative monovalent c 97.1 0.0049 1.1E-07 66.5 12.1 122 552-687 5-144 (357)
56 COG0385 Predicted Na+-dependen 97.0 0.45 9.8E-06 50.2 25.6 150 26-189 34-190 (319)
57 PF05684 DUF819: Protein of un 96.7 1.3 2.7E-05 48.6 30.3 288 22-337 47-351 (378)
58 PRK05274 2-keto-3-deoxyglucona 96.7 0.071 1.5E-06 56.8 16.5 46 38-83 55-100 (326)
59 PRK10490 sensor protein KdpD; 96.5 0.017 3.6E-07 70.6 11.6 123 384-535 250-373 (895)
60 PF13593 DUF4137: SBF-like CPA 96.4 1.4 2.9E-05 47.1 24.6 113 29-150 30-146 (313)
61 TIGR00932 2a37 transporter, mo 96.4 0.11 2.3E-06 54.4 15.7 130 207-341 3-134 (273)
62 PRK03562 glutathione-regulated 96.2 0.13 2.8E-06 60.3 17.0 131 201-336 10-141 (621)
63 PF03390 2HCT: 2-hydroxycarbox 96.2 1.6 3.5E-05 47.8 23.6 283 18-337 76-394 (414)
64 COG0475 KefB Kef-type K+ trans 96.0 0.22 4.7E-06 55.1 16.5 143 201-350 11-159 (397)
65 TIGR00930 2a30 K-Cl cotranspor 95.9 6.5 0.00014 48.5 44.4 132 382-536 572-709 (953)
66 COG0798 ACR3 Arsenite efflux p 95.9 3 6.4E-05 44.2 25.1 151 25-190 46-202 (342)
67 PRK10669 putative cation:proto 95.8 0.24 5.1E-06 57.5 16.6 133 203-340 13-146 (558)
68 PF01758 SBF: Sodium Bile acid 95.8 0.58 1.3E-05 45.9 16.9 106 34-150 2-111 (187)
69 COG0589 UspA Universal stress 95.8 0.15 3.3E-06 47.3 12.2 132 553-697 6-153 (154)
70 PF05145 AmoA: Putative ammoni 95.8 3.5 7.7E-05 44.1 27.6 126 201-333 157-286 (318)
71 PF03616 Glt_symporter: Sodium 95.7 2.9 6.2E-05 45.7 23.3 92 220-316 247-344 (368)
72 TIGR00783 ccs citrate carrier 95.7 0.63 1.4E-05 49.7 17.5 292 19-336 8-326 (347)
73 PRK03659 glutathione-regulated 95.7 0.33 7.2E-06 56.7 17.1 113 202-317 11-124 (601)
74 TIGR00832 acr3 arsenical-resis 95.6 3.4 7.3E-05 44.5 22.9 101 34-146 47-152 (328)
75 PRK05326 potassium/proton anti 95.6 0.19 4.1E-06 58.3 14.4 129 203-334 13-143 (562)
76 PF03601 Cons_hypoth698: Conse 95.4 0.38 8.3E-06 51.0 14.9 153 217-372 23-179 (305)
77 COG2855 Predicted membrane pro 95.2 0.18 3.9E-06 53.2 11.1 115 213-329 30-144 (334)
78 cd01984 AANH_like Adenine nucl 95.1 0.053 1.2E-06 45.7 6.1 49 478-532 35-84 (86)
79 COG3493 CitS Na+/citrate sympo 95.0 1.1 2.4E-05 47.7 16.3 288 18-337 93-413 (438)
80 TIGR00698 conserved hypothetic 95.0 4 8.6E-05 43.8 21.1 46 29-78 65-110 (335)
81 COG0786 GltS Na+/glutamate sym 94.9 2.4 5.2E-05 45.7 18.6 101 211-311 234-341 (404)
82 TIGR00844 c_cpa1 na(+)/h(+) an 93.9 1.1 2.3E-05 53.1 14.7 71 251-322 74-146 (810)
83 PF03956 DUF340: Membrane prot 93.8 0.6 1.3E-05 45.9 10.7 107 29-146 23-134 (191)
84 TIGR00841 bass bile acid trans 93.8 10 0.00022 39.9 25.8 104 31-147 9-117 (286)
85 TIGR00698 conserved hypothetic 93.6 2.1 4.5E-05 46.0 15.2 112 218-331 29-143 (335)
86 COG2205 KdpD Osmosensitive K+ 93.4 0.36 7.7E-06 56.4 9.6 124 384-534 248-372 (890)
87 PLN03159 cation/H(+) antiporte 93.3 1.9 4E-05 52.4 16.1 41 550-590 456-498 (832)
88 TIGR03082 Gneg_AbrB_dup membra 93.2 1.9 4.2E-05 40.9 13.0 120 205-331 4-127 (156)
89 TIGR00831 a_cpa1 Na+/H+ antipo 93.0 1.1 2.5E-05 51.4 13.2 116 205-324 7-124 (525)
90 PF03616 Glt_symporter: Sodium 91.9 2.3 5E-05 46.5 13.1 115 252-366 66-186 (368)
91 PRK10490 sensor protein KdpD; 91.1 0.78 1.7E-05 56.3 9.3 124 551-694 249-372 (895)
92 COG3180 AbrB Putative ammonia 90.9 26 0.00056 37.7 23.1 155 201-365 190-349 (352)
93 TIGR03136 malonate_biotin Na+- 90.7 2.5 5.5E-05 45.0 11.2 116 249-368 101-216 (399)
94 PF06826 Asp-Al_Ex: Predicted 90.3 3.6 7.8E-05 39.6 11.2 85 24-116 48-136 (169)
95 PF03977 OAD_beta: Na+-transpo 89.6 2 4.3E-05 45.2 9.3 113 251-368 67-179 (360)
96 PF03956 DUF340: Membrane prot 88.4 3.8 8.2E-05 40.3 10.0 49 280-328 58-106 (191)
97 PF03601 Cons_hypoth698: Conse 86.6 40 0.00087 35.8 17.2 46 29-78 59-104 (305)
98 TIGR01625 YidE_YbjL_dupl AspT/ 85.8 4.4 9.5E-05 38.4 8.5 85 26-118 50-139 (154)
99 TIGR02039 CysD sulfate adenyly 85.1 3.3 7.3E-05 43.5 8.1 93 555-659 22-132 (294)
100 COG2205 KdpD Osmosensitive K+ 84.7 5.3 0.00011 47.1 10.0 123 552-695 248-373 (890)
101 COG0025 NhaP NhaP-type Na+/H+ 84.7 18 0.00038 40.5 14.1 72 253-325 64-137 (429)
102 PRK15475 oxaloacetate decarbox 84.3 1.3 2.8E-05 47.0 4.5 125 250-376 131-259 (433)
103 PRK15477 oxaloacetate decarbox 84.2 1.3 2.8E-05 47.0 4.5 125 250-376 131-259 (433)
104 PRK15476 oxaloacetate decarbox 84.2 1.3 2.8E-05 47.0 4.5 125 250-376 131-259 (433)
105 TIGR02432 lysidine_TilS_N tRNA 83.4 7 0.00015 38.1 9.2 37 554-590 1-37 (189)
106 TIGR00210 gltS sodium--glutama 83.1 66 0.0014 35.6 17.4 114 252-365 66-185 (398)
107 TIGR03802 Asp_Ala_antiprt aspa 82.8 5.1 0.00011 46.4 9.1 85 25-117 443-531 (562)
108 PF00999 Na_H_Exchanger: Sodiu 82.7 0.49 1.1E-05 51.9 0.8 111 207-320 7-123 (380)
109 PRK03818 putative transporter; 81.2 18 0.0004 41.8 12.8 84 25-117 56-143 (552)
110 TIGR01109 Na_pump_decarbB sodi 80.8 4.5 9.7E-05 42.5 6.8 112 250-366 60-177 (354)
111 PRK05253 sulfate adenylyltrans 80.8 7 0.00015 41.4 8.5 40 554-593 29-68 (301)
112 TIGR00210 gltS sodium--glutama 79.8 1E+02 0.0022 34.0 21.9 95 219-314 244-340 (398)
113 PRK12342 hypothetical protein; 79.6 7.1 0.00015 40.3 7.9 92 562-669 34-137 (254)
114 PRK04288 antiholin-like protei 79.4 76 0.0016 32.2 15.7 83 276-362 92-174 (232)
115 cd01992 PP-ATPase N-terminal d 79.3 12 0.00026 36.2 9.2 37 554-590 1-37 (185)
116 COG1346 LrgB Putative effector 79.0 76 0.0016 32.0 16.0 83 276-362 89-171 (230)
117 PF01171 ATP_bind_3: PP-loop f 78.9 11 0.00025 36.5 8.9 95 554-657 1-107 (182)
118 PRK03359 putative electron tra 77.5 8.4 0.00018 39.8 7.7 102 562-681 35-149 (256)
119 COG2985 Predicted permease [Ge 77.1 7.6 0.00016 43.0 7.4 79 33-120 62-147 (544)
120 TIGR03136 malonate_biotin Na+- 76.2 1.2E+02 0.0026 32.8 16.3 101 171-275 195-303 (399)
121 COG2855 Predicted membrane pro 75.3 7 0.00015 41.5 6.5 56 20-75 272-327 (334)
122 PF03547 Mem_trans: Membrane t 75.0 20 0.00043 39.3 10.5 106 224-331 10-118 (385)
123 COG4651 RosB Kef-type K+ trans 74.2 14 0.0003 38.6 8.0 117 201-323 11-131 (408)
124 COG3969 Predicted phosphoadeno 74.1 6.6 0.00014 41.5 5.8 56 553-618 28-84 (407)
125 TIGR00946 2a69 he Auxin Efflux 72.9 61 0.0013 34.5 13.3 115 20-146 201-316 (321)
126 cd01993 Alpha_ANH_like_II This 72.2 32 0.00069 33.1 10.1 37 554-590 1-39 (185)
127 COG0786 GltS Na+/glutamate sym 71.5 19 0.00042 39.0 8.7 117 248-365 64-186 (404)
128 PRK12563 sulfate adenylyltrans 71.4 11 0.00024 39.9 6.9 40 555-594 40-79 (312)
129 COG3263 NhaP-type Na+/H+ and K 70.8 36 0.00077 37.5 10.5 111 213-324 24-136 (574)
130 KOG2310 DNA repair exonuclease 68.4 9.7 0.00021 42.7 5.8 135 479-616 40-196 (646)
131 COG3180 AbrB Putative ammonia 67.4 1.2E+02 0.0026 32.8 13.5 125 200-334 10-139 (352)
132 PF05145 AmoA: Putative ammoni 65.1 56 0.0012 34.9 10.9 103 223-334 2-106 (318)
133 COG3329 Predicted permease [Ge 64.9 1.6E+02 0.0035 30.9 13.3 118 221-343 17-137 (372)
134 PRK04972 putative transporter; 64.6 28 0.00062 40.3 9.1 84 25-116 438-525 (558)
135 PRK12460 2-keto-3-deoxyglucona 64.4 61 0.0013 34.3 10.6 50 32-81 194-243 (312)
136 PF01012 ETF: Electron transfe 64.3 19 0.00042 34.2 6.6 82 562-656 14-100 (164)
137 COG1646 Predicted phosphate-bi 64.2 22 0.00048 35.7 6.9 64 466-537 15-79 (240)
138 PRK10711 hypothetical protein; 64.2 1.7E+02 0.0037 29.7 14.4 82 277-362 88-169 (231)
139 PF03652 UPF0081: Uncharacteri 63.7 30 0.00066 31.9 7.5 60 477-539 37-97 (135)
140 TIGR00808 malonate_madM malona 62.9 20 0.00043 35.2 6.1 61 25-85 67-134 (254)
141 COG1883 OadB Na+-transporting 62.7 2.8 6E-05 43.0 0.4 130 251-391 82-214 (375)
142 COG5505 Predicted integral mem 62.6 2.1E+02 0.0046 30.2 23.8 298 20-350 51-365 (384)
143 cd01713 PAPS_reductase This do 61.5 58 0.0013 30.4 9.4 36 554-590 1-36 (173)
144 PRK03818 putative transporter; 61.4 95 0.0021 36.0 12.5 82 25-114 428-514 (552)
145 TIGR00659 conserved hypothetic 61.1 1.9E+02 0.0041 29.3 15.5 82 277-362 87-168 (226)
146 COG0679 Predicted permeases [G 60.1 1.7E+02 0.0038 31.0 13.6 103 222-326 11-115 (311)
147 TIGR01625 YidE_YbjL_dupl AspT/ 59.9 29 0.00063 32.9 6.7 87 222-308 23-116 (154)
148 TIGR03802 Asp_Ala_antiprt aspa 59.6 1.2E+02 0.0026 35.3 13.0 89 220-309 415-510 (562)
149 PRK13523 NADPH dehydrogenase N 59.2 2.1E+02 0.0045 30.9 14.0 127 507-660 186-312 (337)
150 COG4827 Predicted transporter 58.7 1.9E+02 0.0042 28.6 13.4 44 31-74 10-56 (239)
151 TIGR01109 Na_pump_decarbB sodi 57.9 1.3E+02 0.0028 32.0 11.4 102 171-275 158-266 (354)
152 PRK04125 murein hydrolase regu 57.8 85 0.0018 29.2 9.2 40 255-295 68-109 (141)
153 PRK06806 fructose-bisphosphate 56.3 49 0.0011 34.7 8.3 111 463-582 16-130 (281)
154 PRK15475 oxaloacetate decarbox 55.2 1.5E+02 0.0033 32.0 11.5 103 170-275 228-337 (433)
155 PF02601 Exonuc_VII_L: Exonucl 54.0 26 0.00056 37.4 6.1 54 605-658 26-87 (319)
156 TIGR00840 b_cpa1 sodium/hydrog 53.8 92 0.002 36.2 10.8 75 251-326 68-151 (559)
157 PF13593 DUF4137: SBF-like CPA 53.4 1.7E+02 0.0036 31.2 12.0 77 223-302 7-85 (313)
158 PRK15477 oxaloacetate decarbox 53.3 1.7E+02 0.0037 31.7 11.5 103 170-275 228-337 (433)
159 PRK15476 oxaloacetate decarbox 53.3 1.7E+02 0.0037 31.7 11.5 103 170-275 228-337 (433)
160 COG0037 MesJ tRNA(Ile)-lysidin 53.0 1.1E+02 0.0023 32.1 10.5 36 553-590 22-57 (298)
161 COG2086 FixA Electron transfer 52.4 69 0.0015 33.1 8.5 103 562-682 36-149 (260)
162 PF07905 PucR: Purine cataboli 50.6 1.3E+02 0.0027 27.2 9.1 87 411-501 19-109 (123)
163 PRK09903 putative transporter 50.4 1.9E+02 0.0042 30.6 12.0 89 19-117 191-280 (314)
164 PRK04972 putative transporter; 50.1 1.2E+02 0.0026 35.2 11.0 102 218-321 408-515 (558)
165 PRK10660 tilS tRNA(Ile)-lysidi 47.8 1.3E+02 0.0027 33.9 10.4 58 553-618 16-74 (436)
166 PRK00109 Holliday junction res 47.3 47 0.001 30.8 5.8 58 479-539 42-99 (138)
167 cd06285 PBP1_LacI_like_7 Ligan 47.0 1.9E+02 0.0042 29.1 11.2 104 446-586 13-120 (265)
168 KOG0573 Asparagine synthase [A 46.2 1.2E+02 0.0025 33.8 9.2 75 554-631 252-328 (520)
169 PF03977 OAD_beta: Na+-transpo 45.6 4.2E+02 0.009 28.5 19.8 102 171-275 158-266 (360)
170 PF05684 DUF819: Protein of un 45.3 2.3E+02 0.005 31.1 11.7 98 247-348 52-153 (378)
171 KOG1288 Amino acid transporter 45.0 3E+02 0.0065 32.5 12.5 99 384-502 560-663 (945)
172 TIGR00434 cysH phosophoadenyly 44.0 69 0.0015 31.8 7.0 36 554-593 15-50 (212)
173 PRK01821 hypothetical protein; 41.6 2.7E+02 0.0058 25.7 9.7 39 256-295 71-111 (133)
174 PRK08185 hypothetical protein; 41.4 1.2E+02 0.0026 31.8 8.4 111 463-583 11-125 (283)
175 PRK12737 gatY tagatose-bisphos 40.8 93 0.002 32.7 7.5 70 463-539 16-85 (284)
176 COG0175 CysH 3'-phosphoadenosi 40.5 1.3E+02 0.0028 31.2 8.5 32 555-590 42-73 (261)
177 PRK12857 fructose-1,6-bisphosp 40.4 91 0.002 32.8 7.3 110 463-582 16-130 (284)
178 PRK01658 holin-like protein; V 40.4 2.4E+02 0.0052 25.6 9.1 41 255-296 65-107 (122)
179 cd01984 AANH_like Adenine nucl 39.3 32 0.00069 28.5 3.2 33 555-588 1-33 (86)
180 PF03390 2HCT: 2-hydroxycarbox 38.8 5.9E+02 0.013 28.3 15.2 104 265-372 109-222 (414)
181 PRK12911 bifunctional preprote 38.1 7.2E+02 0.016 31.9 15.1 16 174-189 1049-1064(1403)
182 PF01507 PAPS_reduct: Phosphoa 37.9 65 0.0014 30.4 5.5 51 554-618 1-51 (174)
183 PF03547 Mem_trans: Membrane t 37.7 2.9E+02 0.0064 29.9 11.4 86 221-307 244-335 (385)
184 cd06281 PBP1_LacI_like_5 Ligan 37.1 3.1E+02 0.0066 27.7 10.8 108 445-587 12-123 (269)
185 COG0816 Predicted endonuclease 36.8 91 0.002 29.1 5.9 57 479-538 41-97 (141)
186 TIGR00250 RNAse_H_YqgF RNAse H 36.4 92 0.002 28.5 5.9 59 477-538 34-92 (130)
187 PRK06801 hypothetical protein; 35.5 1.1E+02 0.0024 32.2 7.1 110 463-582 16-130 (286)
188 PF08659 KR: KR domain; Inter 35.1 2.8E+02 0.006 26.6 9.5 85 558-656 4-91 (181)
189 cd06298 PBP1_CcpA_like Ligand- 34.7 3.8E+02 0.0083 26.7 11.1 109 445-587 12-123 (268)
190 COG1570 XseA Exonuclease VII, 34.6 76 0.0016 35.3 5.8 54 605-658 147-205 (440)
191 COG2431 Predicted membrane pro 34.4 5.6E+02 0.012 26.8 18.2 46 283-328 168-213 (297)
192 KOG1965 Sodium/hydrogen exchan 34.0 94 0.002 35.7 6.5 72 251-324 101-180 (575)
193 TIGR01858 tag_bisphos_ald clas 33.9 1.4E+02 0.003 31.4 7.4 70 463-539 14-83 (282)
194 KOG2718 Na+-bile acid cotransp 33.4 4.5E+02 0.0097 28.8 11.3 31 34-64 117-147 (371)
195 KOG2575 Glucosyltransferase - 33.2 7E+02 0.015 27.6 13.8 151 205-372 196-353 (510)
196 cd06306 PBP1_TorT-like TorT-li 32.3 4.5E+02 0.0098 26.5 11.2 17 482-498 48-64 (268)
197 cd06278 PBP1_LacI_like_2 Ligan 32.1 5.2E+02 0.011 25.7 14.2 109 446-587 13-122 (266)
198 PF03686 UPF0146: Uncharacteri 31.8 81 0.0018 28.8 4.6 36 468-503 72-107 (127)
199 cd00947 TBP_aldolase_IIB Tagat 31.8 1.7E+02 0.0037 30.6 7.6 104 463-576 11-116 (276)
200 COG2117 Predicted subunit of t 31.4 70 0.0015 30.4 4.2 129 554-698 2-155 (198)
201 COG0421 SpeE Spermidine syntha 30.7 1.1E+02 0.0024 32.0 6.2 28 627-657 133-160 (282)
202 PRK12738 kbaY tagatose-bisphos 30.3 1.8E+02 0.0038 30.7 7.5 70 463-539 16-85 (286)
203 PF00532 Peripla_BP_1: Peripla 29.5 1.5E+02 0.0033 30.7 7.1 111 445-587 14-126 (279)
204 PRK12933 secD preprotein trans 29.3 9.8E+02 0.021 28.0 15.0 16 174-189 581-596 (604)
205 PRK09903 putative transporter 28.9 6.5E+02 0.014 26.6 11.9 86 222-309 11-97 (314)
206 cd01995 ExsB ExsB is a transcr 28.8 1.9E+02 0.0041 27.4 7.0 86 554-658 1-88 (169)
207 TIGR02057 PAPS_reductase phosp 28.5 4.6E+02 0.0099 26.4 10.0 38 554-594 27-64 (226)
208 PF02844 GARS_N: Phosphoribosy 28.0 52 0.0011 28.7 2.6 23 477-499 48-70 (100)
209 COG1609 PurR Transcriptional r 28.0 6.7E+02 0.014 26.8 11.9 110 446-587 72-182 (333)
210 PRK09195 gatY tagatose-bisphos 27.9 1.9E+02 0.0041 30.4 7.2 70 463-539 16-85 (284)
211 TIGR02185 Trep_Strep conserved 27.9 5.8E+02 0.013 24.9 13.0 85 219-304 84-185 (189)
212 cd06286 PBP1_CcpB_like Ligand- 27.9 6.1E+02 0.013 25.2 11.2 50 445-497 12-61 (260)
213 PF13194 DUF4010: Domain of un 27.7 6.3E+02 0.014 25.2 15.5 26 207-232 138-164 (211)
214 PRK00286 xseA exodeoxyribonucl 27.3 1E+02 0.0023 34.4 5.7 54 605-658 147-204 (438)
215 PRK04148 hypothetical protein; 27.2 91 0.002 28.8 4.2 34 470-503 81-114 (134)
216 PRK09196 fructose-1,6-bisphosp 27.0 1.9E+02 0.0042 31.3 7.2 70 463-539 16-86 (347)
217 TIGR01520 FruBisAldo_II_A fruc 26.9 2.7E+02 0.0059 30.2 8.3 76 463-540 25-111 (357)
218 PF02844 GARS_N: Phosphoribosy 26.8 24 0.00053 30.8 0.4 35 629-669 47-81 (100)
219 PF09605 Trep_Strep: Hypotheti 26.6 6E+02 0.013 24.7 14.2 124 175-303 40-181 (186)
220 cd06275 PBP1_PurR Ligand-bindi 26.1 6.6E+02 0.014 25.0 11.1 108 446-586 13-123 (269)
221 KOG1650 Predicted K+/H+-antipo 25.9 9E+02 0.02 29.4 13.4 89 4-106 283-378 (769)
222 PF09877 DUF2104: Predicted me 25.9 3.2E+02 0.0069 23.7 6.8 22 220-241 60-81 (99)
223 PRK13399 fructose-1,6-bisphosp 25.7 2.4E+02 0.0052 30.6 7.6 70 463-539 16-86 (347)
224 TIGR00167 cbbA ketose-bisphosp 25.3 2.6E+02 0.0057 29.4 7.8 111 463-582 16-133 (288)
225 COG3763 Uncharacterized protei 25.3 3.2E+02 0.0068 22.2 6.2 35 164-201 10-44 (71)
226 PRK09197 fructose-bisphosphate 25.0 2.4E+02 0.0051 30.6 7.4 76 463-540 19-104 (350)
227 cd06323 PBP1_ribose_binding Pe 24.9 6.9E+02 0.015 24.8 11.3 49 445-498 12-62 (268)
228 TIGR01521 FruBisAldo_II_B fruc 24.7 2E+02 0.0044 31.0 6.9 70 463-539 14-84 (347)
229 KOG2082 K+/Cl- cotransporter K 24.6 1.3E+03 0.028 27.9 19.1 132 384-539 683-823 (1075)
230 PRK05835 fructose-bisphosphate 24.5 2.5E+02 0.0055 29.8 7.4 70 463-539 15-85 (307)
231 COG0395 UgpE ABC-type sugar tr 24.3 8.1E+02 0.018 25.6 11.2 75 51-130 70-150 (281)
232 COG4145 PanF Na+/panthothenate 24.1 9.9E+02 0.021 26.3 12.0 21 212-232 438-458 (473)
233 TIGR00237 xseA exodeoxyribonuc 24.0 1.5E+02 0.0032 33.2 6.0 54 605-658 141-199 (432)
234 cd00946 FBP_aldolase_IIA Class 23.6 3E+02 0.0066 29.8 7.9 76 463-540 14-99 (345)
235 PF13829 DUF4191: Domain of un 23.5 2.7E+02 0.0058 28.1 7.0 50 50-107 18-67 (224)
236 COG1303 Uncharacterized protei 23.5 4.2E+02 0.0092 25.2 7.7 86 562-670 39-125 (179)
237 PRK07998 gatY putative fructos 23.4 2.2E+02 0.0049 29.8 6.8 70 463-539 16-85 (283)
238 TIGR02230 ATPase_gene1 F0F1-AT 23.2 2.1E+02 0.0045 25.0 5.4 38 66-103 51-88 (100)
239 PRK14853 nhaA pH-dependent sod 23.1 9E+02 0.02 27.0 11.6 27 243-269 58-84 (423)
240 PF01171 ATP_bind_3: PP-loop f 23.1 4.7E+02 0.01 25.0 8.7 96 386-502 1-107 (182)
241 cd01542 PBP1_TreR_like Ligand- 23.0 7.4E+02 0.016 24.5 11.9 105 447-587 14-121 (259)
242 cd06296 PBP1_CatR_like Ligand- 22.9 7.6E+02 0.017 24.6 10.9 110 445-586 12-123 (270)
243 COG0037 MesJ tRNA(Ile)-lysidin 22.3 8.6E+02 0.019 25.1 11.3 98 384-502 21-131 (298)
244 TIGR00832 acr3 arsenical-resis 22.2 9.8E+02 0.021 25.6 13.8 67 262-330 55-127 (328)
245 KOG4050 Glutamate transporter 22.0 4.8E+02 0.01 24.8 7.7 12 239-250 155-166 (188)
246 COG3748 Predicted membrane pro 21.8 7.4E+02 0.016 26.5 9.8 41 251-291 225-265 (407)
247 PRK10696 tRNA 2-thiocytidine b 21.6 4.1E+02 0.0088 27.3 8.4 38 553-590 30-69 (258)
248 COG1597 LCB5 Sphingosine kinas 21.5 91 0.002 33.0 3.5 68 606-678 21-89 (301)
249 PF02355 SecD_SecF: Protein ex 21.4 7.7E+02 0.017 24.1 15.5 17 173-189 173-189 (189)
250 COG0679 Predicted permeases [G 21.2 9.9E+02 0.021 25.2 30.1 134 220-359 167-303 (311)
251 cd02929 TMADH_HD_FMN Trimethyl 21.2 1.1E+03 0.023 25.8 11.9 130 507-660 194-326 (370)
252 PRK14561 hypothetical protein; 21.1 2E+02 0.0043 28.3 5.6 22 554-575 2-23 (194)
253 cd00453 FTBP_aldolase_II Fruct 20.8 2.9E+02 0.0062 29.8 6.9 75 463-539 11-96 (340)
254 TIGR02432 lysidine_TilS_N tRNA 20.6 6.2E+02 0.013 24.2 9.1 95 386-502 1-110 (189)
255 PRK10263 DNA translocase FtsK; 20.6 7.1E+02 0.015 32.0 11.1 9 564-572 616-624 (1355)
256 PRK12933 secD preprotein trans 20.5 1.4E+03 0.031 26.8 13.5 14 223-236 495-510 (604)
257 PRK04169 geranylgeranylglycery 20.4 3.2E+02 0.0068 27.8 7.0 59 468-535 9-67 (232)
258 COG1380 Putative effector of m 20.2 6.8E+02 0.015 23.0 8.5 34 255-288 66-101 (128)
259 TIGR02417 fruct_sucro_rep D-fr 20.2 8.4E+02 0.018 25.4 10.8 48 447-497 75-122 (327)
260 PF05982 DUF897: Domain of unk 20.1 8.2E+02 0.018 26.2 10.1 82 280-361 57-139 (327)
261 COG0761 lytB 4-Hydroxy-3-methy 20.1 7.3E+02 0.016 26.1 9.5 30 478-508 102-131 (294)
262 PRK14854 nhaA pH-dependent sod 20.1 3.5E+02 0.0076 29.6 7.5 27 244-270 53-79 (383)
No 1
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=100.00 E-value=8.1e-143 Score=1256.44 Aligned_cols=691 Identities=36% Similarity=0.664 Sum_probs=628.9
Q ss_pred CcEEEcccccccc-cccCccCCCCcHHHHHHHHHHHHHHHHHHHhhhcChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 036516 1 GGALMGPSLLREI-PYLDGLFPMGSRYVLRTFAEFGMILHAFVLGVQIDLGLVKHIRKRAVIIGITSTLLPLVFGLSSFR 79 (709)
Q Consensus 1 aGiilGPs~Lg~~-~~~~~~fp~~~~~~l~~la~iGli~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~ip~~~g~~~~~ 79 (709)
|||+|||++||++ .+.+.+||.++.+.+++++++|++++||++|+|+|++.+||++|+++.+|+.++++|+++|+++++
T Consensus 76 aGIlLGPs~lg~i~~~~~~~fp~~~~~~l~~la~lGlillmFliGLE~Dl~~lr~~~k~a~~ia~~~~ilpf~lg~~~~~ 155 (832)
T PLN03159 76 GGVILGPSVLGQSEVFANTIFPLRSVMVLETMANLGLLYFLFLVGVEMDISVIRRTGKKALAIAIAGMALPFCIGLAFSF 155 (832)
T ss_pred HHHhcCHhhhCcChhhhhhcCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999 888999999888899999999999999999999999999999999999999999999999998888
Q ss_pred HHhhhccCCchhhHHHHHHHHHHhhchHHHHHHHHHHhccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-ccc
Q 036516 80 IVQRISHLDDETASSIAASVVVNSMTSLVVITGLLKELKMLNSELGRLAASITIVSHIFGWSASMILLSVRDSQDN-LTT 158 (709)
Q Consensus 80 ~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~el~ll~s~~G~lals~a~v~D~~~~~ll~i~~~~~~~~~~-~~~ 158 (709)
++.. ...........+++++++|.||+||++++|+|+|+++|+.||+++++++++|+++|++++++.++...+.. ..+
T Consensus 156 ~l~~-~~~~~~~~~~~l~~g~alS~Ts~pVv~riL~Elkll~s~~GrlaLsaavv~Dl~~~ilLav~~~l~~~~~~~~~~ 234 (832)
T PLN03159 156 IFHQ-VSRNVHQGTFILFLGVALSVTAFPVLARILAEIKLINTELGRIAMSAALVNDMCAWILLALAIALAENDSTSLAS 234 (832)
T ss_pred HHhh-cccccchhHHHHHHHHHHHHhhHHHHHHHHHHcCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhH
Confidence 7743 22112224567899999999999999999999999999999999999999999999999988776544322 334
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHhcCCCCC
Q 036516 159 IKPLYITLVVIVYYIIVIFLVRPLTMRIVSKNSEEESMNQNHFIITICIVLVTTILGTLVGQNSILTAFFFGLCLPDGPP 238 (709)
Q Consensus 159 ~~~~~~~~~~i~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~~~vl~~~l~~~~~~~~~G~~~~lGaf~~Gl~ip~~~~ 238 (709)
+| .++..++|++++++++||++.|+.||++++++.+|.++.++++++++++++++.+|+|+++|||++|+++|+ +|
T Consensus 235 l~---~~l~~~~f~~~~~~v~r~~~~~~~r~~~~~~~~~e~~v~~il~~vl~~a~lae~~Gl~~ilGAFlaGl~lp~-~~ 310 (832)
T PLN03159 235 LW---VLLSSVAFVLFCFYVVRPGIWWIIRRTPEGETFSEFYICLILTGVMISGFITDAIGTHSVFGAFVFGLVIPN-GP 310 (832)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCcccchhHHHHHHHHHHHHHHHHhCccHHHHHHHHhhccCC-cc
Confidence 56 667777888889999999999999999988888899999999999999999999999999999999999998 58
Q ss_pred hhhHHHhhhhhhhHhhhhHHHHHHhhhccccccccch-hhHHHHHHHHHHHHHHHHHHHHhHhhhCCCHHHHHHHHHHhh
Q 036516 239 LGTQLVQKLDFFTSGFLLPVFCAISGIRMELYLINEK-SFIKIEFIILMSYLGKFTGVMVPSLFFGMSFLKASCLALIMC 317 (709)
Q Consensus 239 ~~~~l~~kl~~~~~~~flPlFF~~~G~~~d~~~l~~~-~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~ 317 (709)
+++++++|++++++++|+|+||+++|+++|+..+.+. .|..+++++++++++|+++++++++++|+|++|++.+|++||
T Consensus 311 ~~~~l~ekle~~~~~lflPlFFv~vGl~idl~~l~~~~~~~~~~~liv~a~~gK~~g~~l~a~~~g~~~~eal~lG~lm~ 390 (832)
T PLN03159 311 LGVTLIEKLEDFVSGLLLPLFFAISGLKTNVTKIQGPATWGLLVLVIIMASAGKIMGTIIIAFFYTMPFREGITLGFLMN 390 (832)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhheeeHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999888654 465566777888999999999999999999999999999999
Q ss_pred hhhhHHHHHHHhhhccCccchhHHHHHHHHHHHHHHHHHHHHHhhcCccccccchhhcccccCCCc-cceeEEEeccCCC
Q 036516 318 CRGIAEIAVYCMWKDRKIITNQIFAIMITNMVIITGISTTIVGYLYDPSRRYKLDVRRAICKSKQN-SLRILVCIHKEQN 396 (709)
Q Consensus 318 ~kG~~~l~~~~~~~~~~~i~~~~~~~lv~~~ll~t~i~~plv~~ly~p~~~~~~~~~r~i~~~~~~-e~riLv~v~~~~~ 396 (709)
+||+++++++++|++.|+++++.|++++++++++|++++|+++++|||+|||..|++|++|+.+++ |+|||+|+|+++|
T Consensus 391 ~kG~~~Lii~~ig~~~gvi~~~~f~~lVl~avl~T~i~~Plv~~ly~p~rk~~~~~~r~i~~~~~~~elriL~cv~~~~~ 470 (832)
T PLN03159 391 TKGLVEMIVLNVGRDQEVLDDESFAVMVLVAVAMTALITPVVTVVYRPARRLVGYKRRTIQRSKHDAELRMLVCVHTPRN 470 (832)
T ss_pred cccHHHHHHHHHHHhcCccCchhhhHHHHHHHHHHHHHHHHHHHHhCHHhhhccccccccccCCCCCceeEEEEeccCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred hHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCccccccCcccccc------chhchhHHHHHHHHHHHhcCcceEEEEE
Q 036516 397 VNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLKPHHQQTKS------EAASSTQLINAFTQFQRCYYGHVVVQHF 470 (709)
Q Consensus 397 ~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~------~~~~~~~i~~af~~~~~~~~~~v~v~~~ 470 (709)
++++++|++++++++++|.++|++||+|+++|++|++++|+.+++. ...++|+++++|+.|++++ ++|+++++
T Consensus 471 v~~li~Lle~s~~t~~sp~~vy~lhLveL~~r~~~~l~~h~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~-~~v~v~~~ 549 (832)
T PLN03159 471 VPTIINLLEASHPTKRSPICIYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQHA-GCVSVQPL 549 (832)
T ss_pred HHHHHHHHHhcCCCCCCCceEEEEEEEeecCCCccceeeeecccccccccccccccccHHHHHHHHHHhhc-CceEEEEE
Confidence 9999999999999999999999999999999999999999865431 2345899999999999753 57999999
Q ss_pred EEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEEEecCCCCCCCcccCCC
Q 036516 471 TTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGILVHRGQNKSNRPVYTGE 550 (709)
Q Consensus 471 ~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIlvdrg~~~~~~~~~~~~ 550 (709)
|+++||++||+|||+.|+|+++|+||+||||+|+.||++++++..+|.+|+||+++||||||||||||..... ..+..+
T Consensus 550 t~vs~~~~mh~dIc~~A~d~~~slIilpfhk~~~~dg~~~~~~~~~r~~n~~VL~~ApCsVgIlVDRg~~~~~-~~~~~~ 628 (832)
T PLN03159 550 TAISPYSTMHEDVCNLAEDKRVSLIIIPFHKQQTVDGGMEATNPAFRGVNQNVLANAPCSVGILVDRGLSGAT-RLASNQ 628 (832)
T ss_pred EEEeCcccHHHHHHHHHHhcCCCEEEECCCCccCCCCCccccCchHHHHHHHHHccCCCCEEEEEeCCCCccc-cccccc
Confidence 9999999999999999999999999999999999999999988899999999999999999999999975321 123445
Q ss_pred cceEEEEeeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCC-----------------CCCCCCchhHHHHHHHH
Q 036516 551 LLYHIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFITTDQNRP-----------------STEMPDDHELDNQAFDE 613 (709)
Q Consensus 551 ~~~~V~~~f~Gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~~~-----------------~~~~~~~~~~d~~~l~~ 613 (709)
..+||+++|+|||||||||+||+|||+||++++||+||++.++... .+.++.|+++||++++|
T Consensus 629 ~~~~v~~~F~GG~DDREALa~a~rma~~p~v~lTVirf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~D~~~~~e 708 (832)
T PLN03159 629 VSHHVAVLFFGGPDDREALAYAWRMSEHPGITLTVMRFIPGEDAAPTASQPASSPSDPRIPTVETDGKKERQLDEEYINE 708 (832)
T ss_pred cceeEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEEcccccccccccccccccccccccccccchhHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999997322110 01134578899999999
Q ss_pred HhhhcCCC-cEEEEEEeecChhhHHHHHHhhhcCCcEEEEecCCCCCcccccccCcCCCCCccchhhhhhhcCCCCc--c
Q 036516 614 FKDSMVGN-KIIFREEIVKDGIGTTQVIQAFAETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEF--S 690 (709)
Q Consensus 614 ~~~~~~~~-~v~y~e~~v~~g~~~~~~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~--S 690 (709)
|+.++.++ ++.|.|++|+||+|+++++|+++++|||+||||+|+.+|++|+||+||+||||||+|||+|||+||.+ |
T Consensus 709 f~~~~~~~~~v~y~E~~V~~~~e~~~~l~~~~~~ydL~iVGr~~~~~~~~~~gL~~w~e~pELG~iGD~LaS~d~~~~~S 788 (832)
T PLN03159 709 FRARNAGNESIVYTEKVVSNGEETVAAIRSMDSAHDLFIVGRGQGMISPLTAGLTDWSECPELGAIGDLLASSDFAATVS 788 (832)
T ss_pred HHHhcCCCCceEEEEEecCCHHHHHHHHHHhhccCcEEEEecCCCCCcchhccccccccCCccchhhhHHhcCCCCCcee
Confidence 99999766 99999999999999999999999899999999999888999999999999999999999999999988 9
Q ss_pred eEEEeecC
Q 036516 691 VLVVQQQP 698 (709)
Q Consensus 691 vLvvqq~~ 698 (709)
|||||||.
T Consensus 789 VLVvQQ~~ 796 (832)
T PLN03159 789 VLVVQQYV 796 (832)
T ss_pred EEEEEeec
Confidence 99999997
No 2
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-118 Score=1036.06 Aligned_cols=692 Identities=38% Similarity=0.659 Sum_probs=625.9
Q ss_pred CcEEEcccccccc-cccCccCCCCcHHHHHHHHHHHHHHHHHHHhhhcChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 036516 1 GGALMGPSLLREI-PYLDGLFPMGSRYVLRTFAEFGMILHAFVLGVQIDLGLVKHIRKRAVIIGITSTLLPLVFGLSSFR 79 (709)
Q Consensus 1 aGiilGPs~Lg~~-~~~~~~fp~~~~~~l~~la~iGli~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~ip~~~g~~~~~ 79 (709)
|||+|||+.+|++ .+.+.+||.++...+++++.+|+++|+|+.|+|+|.+.++|++|++..||+.++++|+..|.++..
T Consensus 56 ~Gi~lgps~~g~~~~~~~~~f~~~s~~~l~~~~~lg~~~f~Fl~gl~~d~~~i~~~~kka~~I~~~~~~~p~~~g~~~~~ 135 (769)
T KOG1650|consen 56 AGIILGPSLLGRIPSYMNTIFPKSSMIVLELLANLGFLFFLFLMGLEIDLRVIRRTGKKAIVIAIASVVLPFGLGFGLAF 135 (769)
T ss_pred HHHhcchHhhccChhhhhcccccchHHHHHHHHHHHHHHHHHHHHHhhhHHHhhccCceeEEEEEEEeehhhHhhhhhhh
Confidence 5999999999999 999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHhhhccCCch----hhHHHHHHHHHHhhchHHHHHHHHHHhccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-
Q 036516 80 IVQRISHLDDE----TASSIAASVVVNSMTSLVVITGLLKELKMLNSELGRLAASITIVSHIFGWSASMILLSVRDSQD- 154 (709)
Q Consensus 80 ~l~~~~~~~~~----~~~~~l~l~~~ls~Ts~~vv~~iL~el~ll~s~~G~lals~a~v~D~~~~~ll~i~~~~~~~~~- 154 (709)
.+.+....... ...+..++..+++.||||+++++|.|+|++|||+||+++++++++|+.+|.++++..+..+...
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~tsfpv~~~iL~eLkll~se~Grla~saa~v~dv~~~~ll~~~~~~~~~~~~ 215 (769)
T KOG1650|consen 136 LLSDTKADKEDGALFLPFEILFILSAQSITSFPVLARILAELKLLNSELGRLALSAAVVNDVAGWILLALALAFSSELKL 215 (769)
T ss_pred hccccccccccccccccHHHHHHHHHhhcchhHHHHHHHHHhhchhchhhhhhhhhhhhhhHHHHHHHHHHHHHhccCCC
Confidence 77544331111 1226788889999999999999999999999999999999999999999999888887766442
Q ss_pred -CccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHHHhc-hhHhHHHHHHHHh
Q 036516 155 -NLTTIKPLYITLVVIVYYIIVIFLVRPLTMRIVSKNSEEESMNQNHFIITICIVLVTTILGTLVG-QNSILTAFFFGLC 232 (709)
Q Consensus 155 -~~~~~~~~~~~~~~i~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~~~vl~~~l~~~~~~~~~G-~~~~lGaf~~Gl~ 232 (709)
.....| .+...++|++++.+++||.+.|+.||+|+++++++.|...++..++.++.+++.++ +|+++|||+.|++
T Consensus 216 ~~~~~~~---~~~~~~~~~l~~~~v~~p~~~wi~kr~pe~~~~~~~~~~~~l~~vl~~~~~~~~~~~i~~~~Gaf~~Gl~ 292 (769)
T KOG1650|consen 216 SPLRSVW---DLVLVIGFVLFLFFVVRPLMKWIIKRTPEGKPVSDAYICVTLLGVLASAFLTDLIGGIHSIFGAFILGLA 292 (769)
T ss_pred cchHHHH---HHHHHHHHHHheeeehhhhHHHHhhcCCCCCccccceehhhHHHHHHHHHHHHHhccccccchhheEEEe
Confidence 133466 77888889999999999999999999999999999999999999999999999999 8999999999999
Q ss_pred cCCCCChhhHHHhhhhhhhHhhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHhHhhhCCCHHHHHHH
Q 036516 233 LPDGPPLGTQLVQKLDFFTSGFLLPVFCAISGIRMELYLINEKSFIKIEFIILMSYLGKFTGVMVPSLFFGMSFLKASCL 312 (709)
Q Consensus 233 ip~~~~~~~~l~~kl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~l 312 (709)
+|++||+++.+.||+|++.+++|+|+||+.+|+++|+..+.. |......+...+++|++++..++.++|+|+||++++
T Consensus 293 iP~~~p~g~~L~ekle~~~~~~llPl~~~~~G~k~di~~i~~--~~~~~~~i~~~~~~K~l~t~~~sl~~k~p~~~~l~l 370 (769)
T KOG1650|consen 293 IPHGPPLGSALIEKLEDLVSGLLLPLYFAISGLKTDISRINK--WGALIRTILIFGAVKLLSTLGTSLYCKLPLRDSLAL 370 (769)
T ss_pred cCCCCchhHHHHHHHHHHHHHHHHHHHHHhhccceeHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHH
Confidence 999999999999999999999999999999999999988875 666777888889999999999999999999999999
Q ss_pred HHHhhhhhhHHHHHHHhhhccCccchhHHHHHHHHHHHHHHHHHHHHHhhcCccccccchhhcccccCCCc-cceeEEEe
Q 036516 313 ALIMCCRGIAEIAVYCMWKDRKIITNQIFAIMITNMVIITGISTTIVGYLYDPSRRYKLDVRRAICKSKQN-SLRILVCI 391 (709)
Q Consensus 313 g~~m~~kG~~~l~~~~~~~~~~~i~~~~~~~lv~~~ll~t~i~~plv~~ly~p~~~~~~~~~r~i~~~~~~-e~riLv~v 391 (709)
|++||+||.+|+++++.+++.|+++++.|++++++++++|.+++|+++.+|||.|+|.+|++|++|+.+++ ++|+|.|+
T Consensus 371 ~~lm~~kgl~el~~~~~~~~~~~~~~~~f~~~vl~alv~t~I~~~~l~~~y~p~~~~~~y~~~~i~~~~~~~~Lril~cl 450 (769)
T KOG1650|consen 371 GLLMSTKGLVELIVLNTGLDRKILSDEGFTVMVLMALVSTFITPPLLMFLYDPTRKYHGYKKRGIQHLKPNSELRILTCL 450 (769)
T ss_pred HHHHHhhhHHHHHHHHHHhhcCCcccchHHHHHHHHHHHHhhHHHHHHHhcchhhhcCceEeehhhhcCCCCceEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred ccCCChHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCccccccCccccc----cchhchhHHHHHHHHHHHhcCcceEE
Q 036516 392 HKEQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLKPHHQQTK----SEAASSTQLINAFTQFQRCYYGHVVV 467 (709)
Q Consensus 392 ~~~~~~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~----~~~~~~~~i~~af~~~~~~~~~~v~v 467 (709)
|++++++++++++|++.+++++|.+++++|++|+.+|+.|++++|+.+++ .....++++..+|+.|++.+.++|.+
T Consensus 451 ~~~~~is~~i~~le~~~~~~~~p~~v~~lhlveL~~~~~~~li~h~~~~~~~~~~~s~~~~~i~~aF~~f~~~~~~~v~v 530 (769)
T KOG1650|consen 451 HGPENISGIINLLELSSGSLESPLSVYALHLVELVGRATPLLISHKLRKNGRVESRSSSSDQINVAFEAFEKLSQEGVMV 530 (769)
T ss_pred cCCCcchHHHHHHHHcCCCCCCCcceeeeeeeecccccchhhhhhhhccccccccccccchhhHHHHHHHHHhcCCcEEE
Confidence 99999999999999999998889999999999999999999999976644 12234668999999998744578999
Q ss_pred EEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEEEecCCCCCCCccc
Q 036516 468 QHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGILVHRGQNKSNRPVY 547 (709)
Q Consensus 468 ~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIlvdrg~~~~~~~~~ 547 (709)
+++|+++|+++||+|||.+|.++++++|++|||++|+.++..++++..+|++|++|+++|||||||++|||..+ .....
T Consensus 531 ~~~Ta~s~~~~m~edic~la~~~~~~liilpfhk~~~~~~~~e~~~~~~r~in~~vl~~aPCSVgIlvdRg~~~-~~~~~ 609 (769)
T KOG1650|consen 531 RTFTALSPEKLMHEDICTLALDKGVSLIILPFHKHWSDGGTLESDDPAIRELNRNVLKNAPCSVGILVDRGLRR-SGVTQ 609 (769)
T ss_pred EeehhhCChhhchhhhhHHHHhhCCcEEEeehhhhccCCCceecCcHHHHHHHHHHHhcCCCeEEEEEecCccc-cccee
Confidence 99999999999999999999999999999999999996668999999999999999999999999999998211 11112
Q ss_pred CCCcceEEEEeeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCC-CCCCCCCCchhHHHHHHHHH-hhhcCCC-cEE
Q 036516 548 TGELLYHIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFITTDQN-RPSTEMPDDHELDNQAFDEF-KDSMVGN-KII 624 (709)
Q Consensus 548 ~~~~~~~V~~~f~Gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~-~~~~~~~~~~~~d~~~l~~~-~~~~~~~-~v~ 624 (709)
...+.++|++.|+||+||||||++++||++||++++||+|+.++++. +.....++++.+|++..+++ +..+..+ ++.
T Consensus 610 ~~~~~~~v~~lF~GG~DDrEALa~~~rm~~~~~v~lTVirf~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~ 689 (769)
T KOG1650|consen 610 KRGSSYKVVVLFLGGKDDREALALAKRMAENPRVTLTVIRFFPDESKYNRKVLVEVGKMLDQEGLEDFVKSTRESNLDII 689 (769)
T ss_pred cccceeEEEEEecCChhhHHHHHHHHHHhhCCceEEEEEEeeccchhhcccccchhhhhhhhhHHHHHHHHhhhchhhhh
Confidence 23367899999999999999999999999999999999999983331 11112467788888888888 6455444 777
Q ss_pred EE-EEeecChhhHHHHHHhhhcCCcEEEEecCCCCCcccccccCcCCCCCccchhhhhhhcCCCCc--ceEEEeecC
Q 036516 625 FR-EEIVKDGIGTTQVIQAFAETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEF--SVLVVQQQP 698 (709)
Q Consensus 625 y~-e~~v~~g~~~~~~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~--SvLvvqq~~ 698 (709)
|. |+.++++.||.++++++.++|||++|||+++.+++.++|++||+||||||+|||.|+|+||.+ ||||+|||.
T Consensus 690 ~~~ek~v~~~~et~~~~~~~~~~ydL~ivGr~~~~~~~~t~gl~~W~e~pELg~IGd~las~~~~~~~svlvvqq~~ 766 (769)
T KOG1650|consen 690 YAEEKIVLNGAETTALLRSITEDYDLFIVGRSHGMLSEATGGLSEWSECPELGVIGDLLASSDFSSKVSVLVVQQQL 766 (769)
T ss_pred hhhHHHHhcchhHHHHHHHhccccceEEEecccccccchhcCchhcccCccccccCccccccccCccceEEEEEeee
Confidence 88 699999999999999999999999999999999999999999999999999999999999966 999999985
No 3
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=100.00 E-value=2.1e-43 Score=404.34 Aligned_cols=344 Identities=16% Similarity=0.189 Sum_probs=290.8
Q ss_pred CcEEEcccccccccccCccCCCCcHHHHHHHHHHHHHHHHHHHhhhcChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 036516 1 GGALMGPSLLREIPYLDGLFPMGSRYVLRTFAEFGMILHAFVLGVQIDLGLVKHIRKRAVIIGITSTLLPLVFGLSSFRI 80 (709)
Q Consensus 1 aGiilGPs~Lg~~~~~~~~fp~~~~~~l~~la~iGli~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~ip~~~g~~~~~~ 80 (709)
+|+++||+++|.+ ...+.++.++++|++++||.+|+|+|++.+++.++.++..++.++++|++++++++++
T Consensus 39 aGillGp~~lg~~---------~~~~~~~~la~lGli~llF~~Gle~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (558)
T PRK10669 39 AGVLAGPFTPGFV---------ADTKLAPELAELGVILLMFGVGLHFSLKDLMAVKSIAIPGAIAQIAVATLLGMALSAV 109 (558)
T ss_pred HHHhhCccccccc---------cchHHHHHHHHHHHHHHHHHhHhcCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999876 3356789999999999999999999999999998888888888999999988887776
Q ss_pred HhhhccCCchhhHHHHHHHHHHhhchHHHHHHHHHHhccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhcc---CC-Cc
Q 036516 81 VQRISHLDDETASSIAASVVVNSMTSLVVITGLLKELKMLNSELGRLAASITIVSHIFGWSASMILLSVRDS---QD-NL 156 (709)
Q Consensus 81 l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~el~ll~s~~G~lals~a~v~D~~~~~ll~i~~~~~~~---~~-~~ 156 (709)
++.. +..++++|++++.||++++.++|+|+|+++++.||+++++++++|+++|++++++..+... +. +.
T Consensus 110 ~~~~-------~~~al~lg~~ls~tS~~vv~~~L~e~~~l~s~~G~~~l~~~~~~Dl~~i~~l~~~~~l~~~~~~~~~~~ 182 (558)
T PRK10669 110 LGWS-------LMTGIVFGLCLSTASTVVLLRALEERQLIDSQRGQIAIGWLIVEDLVMVLTLVLLPAVAGMMEQGDVGF 182 (558)
T ss_pred hCCC-------HHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcch
Confidence 6532 4678899999999999999999999999999999999999999999999998877654321 11 11
Q ss_pred -cchhh-HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHH-HHHhchhHhHHHHHHHHhc
Q 036516 157 -TTIKP-LYITLVVIVYYIIVIFLVRPLTMRIVSKNSEEESMNQNHFIITICIVLVTTIL-GTLVGQNSILTAFFFGLCL 233 (709)
Q Consensus 157 -~~~~~-~~~~~~~i~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~~~vl~~~l~~~~~-~~~~G~~~~lGaf~~Gl~i 233 (709)
..++. ...++..++|++++.++.|++++|+.++.++.+ .+|.+..+++++++++++. ++.+|+|+++|||++|+++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~e~~~l~~l~~~l~~a~~~~~~lGls~~lGAflaGl~l 261 (558)
T PRK10669 183 ATLAVDLGITIGKVIAFIAIMMLVGRRLVPWILARSAATG-SRELFTLSVLALALGIAFGAVELFDVSFALGAFFAGMVL 261 (558)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CchHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHH
Confidence 11110 114556667777888899999999999987654 5778888888888888865 6999999999999999999
Q ss_pred CCCCChhhHHHhhhhhhhHhhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHhHhhhCCCHHHHHHHH
Q 036516 234 PDGPPLGTQLVQKLDFFTSGFLLPVFCAISGIRMELYLINEKSFIKIEFIILMSYLGKFTGVMVPSLFFGMSFLKASCLA 313 (709)
Q Consensus 234 p~~~~~~~~l~~kl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg 313 (709)
|+. |.++++.+...++ .++|+|+||+++|+++|+..+.+. +.....++++.+++|++++++.++++|+|+|+++.+|
T Consensus 262 ~~~-~~~~~~~~~~~~~-~~~f~plFFv~~G~~~d~~~l~~~-~~~~~~~~~~~~v~K~~~~~~~~~~~g~~~~~a~~~g 338 (558)
T PRK10669 262 NES-ELSHRAAHDTLPL-RDAFAVLFFVSVGMLFDPMILIQQ-PLAVLATLAIIVFGKSLAAFFLVRLFGHSRRTALTIA 338 (558)
T ss_pred hCC-hhHHHHHHHHhhH-HHHHHHHHHHHhhhhcCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHH
Confidence 984 6788888777776 789999999999999999876543 3334456667889999999999999999999999999
Q ss_pred HHhhhhhhHHHHHHHhhhccCccchhHHHHHHHHHHHHHHHHHHHHHhhcC
Q 036516 314 LIMCCRGIAEIAVYCMWKDRKIITNQIFAIMITNMVIITGISTTIVGYLYD 364 (709)
Q Consensus 314 ~~m~~kG~~~l~~~~~~~~~~~i~~~~~~~lv~~~ll~t~i~~plv~~ly~ 364 (709)
++|++||+++++++..|++.|+++++.|+++++++++|++++|.+.++..|
T Consensus 339 l~l~~~Gef~lii~~~~~~~gii~~~~~~~~v~~~~~t~~~~P~l~~~~~~ 389 (558)
T PRK10669 339 ASLAQIGEFAFILAGLGMALNLLPQAGQNLVLAGAILSIMLNPVLFTLLER 389 (558)
T ss_pred HHHhcccchHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 999999999999999999999999999999999999988888877777654
No 4
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=100.00 E-value=6.9e-43 Score=401.36 Aligned_cols=338 Identities=17% Similarity=0.204 Sum_probs=281.8
Q ss_pred CcEEEcccccccccccCccCCCCcHHHHHHHHHHHHHHHHHHHhhhcChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 036516 1 GGALMGPSLLREIPYLDGLFPMGSRYVLRTFAEFGMILHAFVLGVQIDLGLVKHIRKRAVIIGITSTLLPLVFGLSSFRI 80 (709)
Q Consensus 1 aGiilGPs~Lg~~~~~~~~fp~~~~~~l~~la~iGli~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~ip~~~g~~~~~~ 80 (709)
+|+++||+++|.+ ...+.++.++++|++++||++|+|+|++.+++.+|+++.+|..++++|+++++.++++
T Consensus 38 aGillGP~~lg~i---------~~~~~i~~laelGvv~LlF~iGLEl~~~~l~~~~~~~~~~g~~qv~~~~~~~~~~~~~ 108 (621)
T PRK03562 38 AGCIIGPWGLRLV---------TDVESILHFAEFGVVLMLFVIGLELDPQRLWKLRRSIFGGGALQMVACGGLLGLFCML 108 (621)
T ss_pred HHHHhCcccccCC---------CCHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999987 3456789999999999999999999999999999999999999999999988887776
Q ss_pred HhhhccCCchhhHHHHHHHHHHhhchHHHHHHHHHHhccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhccC-C-Cccc
Q 036516 81 VQRISHLDDETASSIAASVVVNSMTSLVVITGLLKELKMLNSELGRLAASITIVSHIFGWSASMILLSVRDSQ-D-NLTT 158 (709)
Q Consensus 81 l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~el~ll~s~~G~lals~a~v~D~~~~~ll~i~~~~~~~~-~-~~~~ 158 (709)
++.. +..++++|.+++.||++++.++|+|+|+++|+.||.++++++++|+.+|++++++..+...+ . +...
T Consensus 109 ~g~~-------~~~al~ig~~la~SStaiv~~~L~e~~~l~t~~G~~~l~~ll~~Dl~~i~ll~l~~~l~~~~~~~~~~~ 181 (621)
T PRK03562 109 LGLR-------WQVALLIGLGLALSSTAIAMQAMNERNLMVTQMGRSAFAILLFQDIAAIPLVAMIPLLAASGASTTLGA 181 (621)
T ss_pred hCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHHHHHHHHHccCCCccchhH
Confidence 6432 56789999999999999999999999999999999999999999999999998876554321 1 1111
Q ss_pred hhhHHHHHHHHH----HHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHhcC
Q 036516 159 IKPLYITLVVIV----YYIIVIFLVRPLTMRIVSKNSEEESMNQNHFIITICIVLVTTILGTLVGQNSILTAFFFGLCLP 234 (709)
Q Consensus 159 ~~~~~~~~~~i~----~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~~~vl~~~l~~~~~~~~~G~~~~lGaf~~Gl~ip 234 (709)
.| ..++..++ ++++..++.||+++|+.|+. .+|.+...+++++++++++++.+|+|+++|||++|++++
T Consensus 182 ~~--~~~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~-----~~e~~~~~~l~lv~~~a~la~~~Gls~~lGAFlAGl~l~ 254 (621)
T PRK03562 182 FA--LSALKVAGALALVVLGGRYVTRPALRFVARSG-----LREVFTAVALFLVFGFGLLMEEVGLSMALGAFLAGVLLA 254 (621)
T ss_pred HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CchHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHhc
Confidence 22 02222222 22333455666666665442 367888888899999999999999999999999999999
Q ss_pred CCCChhhHHHhhhhhhhHhhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHhHhhhCCCHHHHHHHHH
Q 036516 235 DGPPLGTQLVQKLDFFTSGFLLPVFCAISGIRMELYLINEKSFIKIEFIILMSYLGKFTGVMVPSLFFGMSFLKASCLAL 314 (709)
Q Consensus 235 ~~~~~~~~l~~kl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~ 314 (709)
+. ++++++.+++++| .++|+|+||+++||++|+..+... ++.++.++++.+++|++++++.++++|+++++++.+|+
T Consensus 255 ~~-~~~~~le~~i~pf-~~lll~lFFi~vG~~id~~~l~~~-~~~il~~~~~~~~~K~~~~~~~~~~~g~~~~~a~~~gl 331 (621)
T PRK03562 255 SS-EYRHALESDIEPF-KGLLLGLFFIAVGMSIDFGTLLEN-PLRILILLLGFLAIKIAMLWLLARPLGVPRKQRRWFAV 331 (621)
T ss_pred CC-ccHHHHHHHHHHH-HHHHHHHHHHHhhhhccHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHH
Confidence 84 6899999999999 799999999999999999877644 33445556678899999999999999999999999999
Q ss_pred HhhhhhhHHHHHHHhhhccCccchhHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 036516 315 IMCCRGIAEIAVYCMWKDRKIITNQIFAIMITNMVIITGISTTIVGYLYDP 365 (709)
Q Consensus 315 ~m~~kG~~~l~~~~~~~~~~~i~~~~~~~lv~~~ll~t~i~~plv~~ly~p 365 (709)
+|+++|++++++++.+.+.|+++++.|+.+++++++ |.+.+|++..+|+|
T Consensus 332 ~L~~~Gef~~vl~~~a~~~~~i~~~~~~~lv~~v~l-S~~~tP~l~~~~~~ 381 (621)
T PRK03562 332 LLGQGGEFAFVVFGAAQMANVLEPEWAKLLTLAVAL-SMAATPLLLVLLDR 381 (621)
T ss_pred HHhccccHHHHHHHHHHHCCCCCHHHHHHHHHHHHH-HHHHHHHHHHhhhH
Confidence 999999999999999999999999999999987777 55556666666654
No 5
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=100.00 E-value=2.9e-42 Score=395.69 Aligned_cols=340 Identities=17% Similarity=0.244 Sum_probs=281.2
Q ss_pred CcEEEcccccccccccCccCCCCcHHHHHHHHHHHHHHHHHHHhhhcChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 036516 1 GGALMGPSLLREIPYLDGLFPMGSRYVLRTFAEFGMILHAFVLGVQIDLGLVKHIRKRAVIIGITSTLLPLVFGLSSFRI 80 (709)
Q Consensus 1 aGiilGPs~Lg~~~~~~~~fp~~~~~~l~~la~iGli~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~ip~~~g~~~~~~ 80 (709)
||+++||+++|.+ ...+.+..++++|++++||.+|+|+|++.+++.+|+++.+|..++++|+.+++.++++
T Consensus 38 aGillGP~~lg~i---------~~~~~i~~laelGvv~LLF~iGLel~~~~l~~~~~~~~~~g~~~v~~t~~~~~~~~~~ 108 (601)
T PRK03659 38 AGIAIGPWGLGFI---------SDVDEILHFSELGVVFLMFIIGLELNPSKLWQLRRSIFGVGAAQVLLSAAVLAGLLML 108 (601)
T ss_pred HHHHhccccccCC---------CcHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999987 3346788999999999999999999999999999999999999999999877766655
Q ss_pred HhhhccCCchhhHHHHHHHHHHhhchHHHHHHHHHHhccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc-cch
Q 036516 81 VQRISHLDDETASSIAASVVVNSMTSLVVITGLLKELKMLNSELGRLAASITIVSHIFGWSASMILLSVRDSQDNL-TTI 159 (709)
Q Consensus 81 l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~el~ll~s~~G~lals~a~v~D~~~~~ll~i~~~~~~~~~~~-~~~ 159 (709)
++. .+..++++|++++.||++++.++|+|+|+++++.||++++..+++|+.+|++++++..+....... .+.
T Consensus 109 ~g~-------~~~~a~~~g~~la~SSTaiv~~iL~e~~~~~t~~G~~~l~vll~~Di~~i~ll~l~~~l~~~~~~~~~~~ 181 (601)
T PRK03659 109 TDF-------SWQAAVVGGIGLAMSSTAMALQLMREKGMNRSESGQLGFSVLLFQDLAVIPALALVPLLAGSADEHFDWM 181 (601)
T ss_pred Hcc-------CHHHHHHHHHHHHHHHHHHHHHHHHHcccccCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHH
Confidence 432 157788999999999999999999999999999999999999999999999988876554322111 111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHhcCCCCCh
Q 036516 160 KPLYITLVVIVYYIIVIFLVRPLTMRIVSKNSEEESMNQNHFIITICIVLVTTILGTLVGQNSILTAFFFGLCLPDGPPL 239 (709)
Q Consensus 160 ~~~~~~~~~i~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~~~vl~~~l~~~~~~~~~G~~~~lGaf~~Gl~ip~~~~~ 239 (709)
.....++..++++++..++.||+++|+.+. +.+|.++..+++++++++++++.+|+|+++|||++|+++++. +.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~e~~~~~~l~~vl~~a~l~~~~Gls~~LGAFlaGl~l~~s-~~ 255 (601)
T PRK03659 182 KIGMKVLAFAGMLIGGRYLLRPLFRFIAAS-----GVREVFTAAALLLVLGSALFMDALGLSMALGTFIAGVLLAES-EY 255 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCchHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHhcCC-ch
Confidence 100012222222233345566666666443 246788888899999999999999999999999999999994 68
Q ss_pred hhHHHhhhhhhhHhhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHhHhhhCCCHHHHHHHHHHhhhh
Q 036516 240 GTQLVQKLDFFTSGFLLPVFCAISGIRMELYLINEKSFIKIEFIILMSYLGKFTGVMVPSLFFGMSFLKASCLALIMCCR 319 (709)
Q Consensus 240 ~~~l~~kl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~k 319 (709)
++++.++++++ .++|+|+||+++||++|+..+.+. |+.++.++++.+++|++++++.++++|+++++++.+|++|+++
T Consensus 256 ~~~l~~~i~pf-~~lll~lFFi~vGm~id~~~l~~~-~~~il~~~~~~l~~K~~~~~~~~~~~g~~~~~al~~g~~L~~~ 333 (601)
T PRK03659 256 RHELEIAIEPF-KGLLLGLFFISVGMALNLGVLYTH-LLWVLISVVVLVAVKGLVLYLLARLYGLRSSERMQFAGVLSQG 333 (601)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHhhhccHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhcc
Confidence 99999999998 799999999999999999877654 4455566677789999999999999999999999999999999
Q ss_pred hhHHHHHHHhhhccCccchhHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 036516 320 GIAEIAVYCMWKDRKIITNQIFAIMITNMVIITGISTTIVGYLYDP 365 (709)
Q Consensus 320 G~~~l~~~~~~~~~~~i~~~~~~~lv~~~ll~t~i~~plv~~ly~p 365 (709)
|++++++++.+.+.|+++++.|+.+++++++|+ +.+|++..+|+|
T Consensus 334 Gef~~vl~~~a~~~g~i~~~~~~~lv~~v~ls~-~~tP~l~~~~~~ 378 (601)
T PRK03659 334 GEFAFVLFSAASSQRLLQGDQMALLLVVVTLSM-MTTPLLMKLIDK 378 (601)
T ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHhHH
Confidence 999999999999999999999999988888755 667777777665
No 6
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.1e-41 Score=366.92 Aligned_cols=344 Identities=19% Similarity=0.319 Sum_probs=293.9
Q ss_pred CcEEEcccccccccccCccCCCCcHHHHHHHHHHHHHHHHHHHhhhcChHHHHhhhhh-HHHHHHHHHHHHHHHHHHHHH
Q 036516 1 GGALMGPSLLREIPYLDGLFPMGSRYVLRTFAEFGMILHAFVLGVQIDLGLVKHIRKR-AVIIGITSTLLPLVFGLSSFR 79 (709)
Q Consensus 1 aGiilGPs~Lg~~~~~~~~fp~~~~~~l~~la~iGli~~lF~~Gle~d~~~l~~~~~~-~~~i~~~~~~ip~~~g~~~~~ 79 (709)
||+++||..++.+ .++.+.++.++++|++++||.+|+|+|++.+||++|+ +...+..++..|++++....+
T Consensus 39 aGiilGp~~~~~~--------~~~~~~i~~laelGvi~LlF~~GLE~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 110 (397)
T COG0475 39 AGIILGPWGLLLI--------IESSEIIELLAELGVVFLLFLIGLEFDLERLKKVGRSVGLGVAQVGLTAPFLLGLLLLL 110 (397)
T ss_pred HHHhcCccccccc--------CCchHHHHHHHHHhHHHHHHHHHHCcCHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHH
Confidence 6999999554433 4678999999999999999999999999999999999 888899999999988865544
Q ss_pred H-HhhhccCCchhhHHHHHHHHHHhhchHHHHHHHHHHhccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC--c
Q 036516 80 I-VQRISHLDDETASSIAASVVVNSMTSLVVITGLLKELKMLNSELGRLAASITIVSHIFGWSASMILLSVRDSQDN--L 156 (709)
Q Consensus 80 ~-l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~el~ll~s~~G~lals~a~v~D~~~~~ll~i~~~~~~~~~~--~ 156 (709)
. ++.. +..++++|.+++.||+++++++|+|+|.++++.||+++++++++|+.+|++++++..+..++.. .
T Consensus 111 ~~~g~~-------~~~al~lg~~l~~sS~~i~~~iL~e~~~~~~~~g~~~l~~~i~~Di~~i~lLai~~~l~~~g~~~~~ 183 (397)
T COG0475 111 GILGLS-------LIAALFLGAALALSSTAIVLKILMELGLLKTREGQLILGALVFDDIAAILLLAIVPALAGGGSGSVG 183 (397)
T ss_pred HHhccC-------hHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCccHh
Confidence 3 3222 4679999999999999999999999999999999999999999999999999999988765432 1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHhcCCC
Q 036516 157 TTIKPLYITLVVIVYYIIVIFLVRPLTMRIVSKNSEEESMNQNHFIITICIVLVTTILGTLVGQNSILTAFFFGLCLPDG 236 (709)
Q Consensus 157 ~~~~~~~~~~~~i~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~~~vl~~~l~~~~~~~~~G~~~~lGaf~~Gl~ip~~ 236 (709)
.++. ......+|.++..+..|++.+|+.|+..+. +.+|....+++++++++++++|.+|+|+++|||++|+++++.
T Consensus 184 ~~~~---~~~~~~~f~~~~l~~g~~l~~~~~r~~~~~-~~~e~~~~~~l~i~l~~a~l~e~~gls~ilGAFlaGl~ls~~ 259 (397)
T COG0475 184 FILG---LLLAILAFLALLLLLGRYLLPPLFRRVAKT-ESSELFILFVLLLVLGAAYLAELLGLSMILGAFLAGLLLSES 259 (397)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHhccc
Confidence 2334 555666677666666677777777776432 346788999999999999999999999999999999999997
Q ss_pred CChhhHHHhhhhhhhHhhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHhHhhhCCCHHHHHHHHHHh
Q 036516 237 PPLGTQLVQKLDFFTSGFLLPVFCAISGIRMELYLINEKSFIKIEFIILMSYLGKFTGVMVPSLFFGMSFLKASCLALIM 316 (709)
Q Consensus 237 ~~~~~~l~~kl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m 316 (709)
....++++++++++.+++|+|+||+++|+++|++.+... +..+..++.+..++|++++++.+|..|.+.|++...|+.+
T Consensus 260 ~~~~~~l~~~i~~~~~~~fiplFFi~vG~~~dl~~l~~~-~~~~l~~~~~~i~~K~~~~~~~~~~~g~~~~~~~~~g~~~ 338 (397)
T COG0475 260 EYRKHELEEKIEPFGDGLFIPLFFISVGMSLDLGVLLEN-LLLILLLVALAILGKILGAYLAARLLGFSKRLALGIGLLL 338 (397)
T ss_pred ccchHHHHHHHHhHHhHHHHHHHHHHhhHHcCHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhhh
Confidence 544479999999998889999999999999999988765 3346777788899999999999999999999999999999
Q ss_pred hhhhhHHHHHHHhhhccCccchhHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 036516 317 CCRGIAEIAVYCMWKDRKIITNQIFAIMITNMVIITGISTTIVGYLYDP 365 (709)
Q Consensus 317 ~~kG~~~l~~~~~~~~~~~i~~~~~~~lv~~~ll~t~i~~plv~~ly~p 365 (709)
.++|+++++.++.+.+ +.++++.++..+.+++++|.+.+++.+.+++.
T Consensus 339 ~~~ge~~~v~~~~~~~-~~i~~~~~~~~v~~smi~t~i~~~~~~~~~~~ 386 (397)
T COG0475 339 RQGGEFAFVLAGIALG-SAISEALLTAVVILSMITTPILPLLTPILLKR 386 (397)
T ss_pred hhhhHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999886 68889999999888888888877777776644
No 7
>PRK05326 potassium/proton antiporter; Reviewed
Probab=100.00 E-value=4e-35 Score=335.78 Aligned_cols=345 Identities=10% Similarity=0.068 Sum_probs=282.0
Q ss_pred CcEEEcccccccccccCccCCCCcHHHHHHHHHHHHHHHHHHHhhhcChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 036516 1 GGALMGPSLLREIPYLDGLFPMGSRYVLRTFAEFGMILHAFVLGVQIDLGLVKHIRKRAVIIGITSTLLPLVFGLSSFRI 80 (709)
Q Consensus 1 aGiilGPs~Lg~~~~~~~~fp~~~~~~l~~la~iGli~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~ip~~~g~~~~~~ 80 (709)
+|+++||+++|.+. .++.+..+.++++|++++||..|+|+|++.+|+++++++.+++.++++|++++...+++
T Consensus 39 ~GillGp~~lg~i~-------~~~~~~~~~i~~l~L~~iLF~~Gl~~~~~~l~~~~~~~~~la~~gv~~t~~~~g~~~~~ 111 (562)
T PRK05326 39 IGMLAGEDGLGGIQ-------FDNYPLAYLVGNLALAVILFDGGLRTRWSSFRPALGPALSLATLGVLITAGLTGLFAHW 111 (562)
T ss_pred HHHHhCccccCCcc-------cCcHHHHHHHHHHHHHHHHHcCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999761 23457889999999999999999999999999999999999999999999885544444
Q ss_pred HhhhccCCchhhHHHHHHHHHHhhchHHHHHHHHHHhcc-ccChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC---c
Q 036516 81 VQRISHLDDETASSIAASVVVNSMTSLVVITGLLKELKM-LNSELGRLAASITIVSHIFGWSASMILLSVRDSQDN---L 156 (709)
Q Consensus 81 l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~el~l-l~s~~G~lals~a~v~D~~~~~ll~i~~~~~~~~~~---~ 156 (709)
+.+. .+..++++|++++.|+++++.++++|+|+ +++++|+++.+.+.+||.++++++.++..+...+.. +
T Consensus 112 l~g~------~~~~alllgai~s~Td~a~v~~iL~~~~l~l~~~v~~~l~~eS~~nD~~ai~l~~~~~~~~~~~~~~~~~ 185 (562)
T PRK05326 112 LLGL------DWLEGLLLGAIVGSTDAAAVFSLLRGKGLNLKERVASTLEIESGSNDPMAVFLTITLIELITGGETGLSW 185 (562)
T ss_pred HhcC------CHHHHHHHhhhhccCchHHHHHHHhccCCCcchhHHhHhhhhhhcccHHHHHHHHHHHHHHhCCCCcchH
Confidence 4333 26789999999999999999999999996 899999999999999999999988777766543321 1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHhcCCC
Q 036516 157 TTIKPLYITLVVIVYYIIVIFLVRPLTMRIVSKNSEEESMNQNHFIITICIVLVTTILGTLVGQNSILTAFFFGLCLPDG 236 (709)
Q Consensus 157 ~~~~~~~~~~~~i~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~~~vl~~~l~~~~~~~~~G~~~~lGaf~~Gl~ip~~ 236 (709)
..++ .++..+++.++.+++.++++.|+.+|.... .++.+..+++++++++++++|.+|.|+++|+|++|+++++.
T Consensus 186 ~~~~---~~~~~~~~g~~~G~~~g~l~~~l~~~~~~~--~~~~~~i~~l~~~l~~~~~a~~lg~Sg~la~~iaGl~l~n~ 260 (562)
T PRK05326 186 GFLL---LFLQQFGLGALIGLLGGWLLVQLLNRIALP--AEGLYPILVLAGALLIFALTAALGGSGFLAVYLAGLVLGNR 260 (562)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhccCc--hhhHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHhCC
Confidence 1122 344455566666778888899998887421 24567788889999999999999999999999999999987
Q ss_pred CChhhHHHhhhhhhhHhhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHhHhhhCCCHHHHHHHHHHh
Q 036516 237 PPLGTQLVQKLDFFTSGFLLPVFCAISGIRMELYLINEKSFIKIEFIILMSYLGKFTGVMVPSLFFGMSFLKASCLALIM 316 (709)
Q Consensus 237 ~~~~~~l~~kl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m 316 (709)
++..+.-.+++.+...+++.|+||+++|+.+|++.+.+..+...++.+++.+++|++++++..+.+++++||++.+||.
T Consensus 261 ~~~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~~l~~~~~~~l~i~~~l~~vaR~l~v~l~~~~~~~~~~e~~~i~~~- 339 (562)
T PRK05326 261 PIRHRHSILRFFDGLAWLAQIGMFLVLGLLVTPSRLLDIALPALLLALFLILVARPLAVFLSLLPFRFNLREKLFISWV- 339 (562)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHhhhheeeee-
Confidence 6555555566666668899999999999999998776433333333445677899999999999999999999999995
Q ss_pred hhhhhHHHHHHHhhhccCccc-hhHHHHHHHHHHHHHHHHHHHHHhhcC
Q 036516 317 CCRGIAEIAVYCMWKDRKIIT-NQIFAIMITNMVIITGISTTIVGYLYD 364 (709)
Q Consensus 317 ~~kG~~~l~~~~~~~~~~~i~-~~~~~~lv~~~ll~t~i~~plv~~ly~ 364 (709)
++||.++++++.++++.|+.+ +..|+++.+++++|+.+.++.++.+.|
T Consensus 340 g~RG~v~i~lA~~~~~~~~~~~~~~~~~~~~vvl~S~~i~g~tl~~~a~ 388 (562)
T PRK05326 340 GLRGAVPIVLATFPMMAGLPNAQLIFNVVFFVVLVSLLLQGTTLPWAAR 388 (562)
T ss_pred cchhHHHHHHHHHHHHcCCCchhhhhhhhheeeHHHHHHHHhhHHHHHH
Confidence 899999999999999999886 467888888888888888877776553
No 8
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=100.00 E-value=4.1e-32 Score=284.05 Aligned_cols=246 Identities=23% Similarity=0.379 Sum_probs=211.1
Q ss_pred CcEEEcccccccccccCccCCCCcHHHHHHHHHHHHHHHHHHHhhhcChHHHHhhhhhHHHHHHHHHHHH-HHHHHHHHH
Q 036516 1 GGALMGPSLLREIPYLDGLFPMGSRYVLRTFAEFGMILHAFVLGVQIDLGLVKHIRKRAVIIGITSTLLP-LVFGLSSFR 79 (709)
Q Consensus 1 aGiilGPs~Lg~~~~~~~~fp~~~~~~l~~la~iGli~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~ip-~~~g~~~~~ 79 (709)
+|+++||+++|.+ +..+.++.++++|+++++|.+|+|+|++.+||++|++..++..++++| +.+++.+++
T Consensus 25 ~GillGp~~lg~i---------~~~~~~~~l~~igl~~llF~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (273)
T TIGR00932 25 AGVLIGPSGLGLI---------SNVEGVNHLAEFGVILLMFLIGLELDLERLWKLRKAAFGVGVLQVLVPGVLLGLLLGH 95 (273)
T ss_pred HHHHhCcccccCC---------CChHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999877 344689999999999999999999999999999999999999999999 677776666
Q ss_pred HHhhhccCCchhhHHHHHHHHHHhhchHHHHHHHHHHhccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC--cc
Q 036516 80 IVQRISHLDDETASSIAASVVVNSMTSLVVITGLLKELKMLNSELGRLAASITIVSHIFGWSASMILLSVRDSQDN--LT 157 (709)
Q Consensus 80 ~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~el~ll~s~~G~lals~a~v~D~~~~~ll~i~~~~~~~~~~--~~ 157 (709)
+++.. +..++++|++++.||+|++.++++|+|+.+++.||++++++++||+++|+++++.....++... ..
T Consensus 96 ~~~~~-------~~~~~~lg~~ls~Ts~~v~~~il~~~~~~~~~~g~l~l~~~~~~D~~~i~~l~~~~~~~~~~~~~~~~ 168 (273)
T TIGR00932 96 LLGLA-------LGAAVVIGIILALSSTAVVVQVLKERGLLKTPFGQTVLGILLFQDIAVVPLLALLPLLATSASTEHVA 168 (273)
T ss_pred HHCCC-------HHHHHHHHHHHHHhHHHHHHHHHHHcCcccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHH
Confidence 65422 4789999999999999999999999999999999999999999999999999888776643221 12
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHhcCCCC
Q 036516 158 TIKPLYITLVVIVYYIIVIFLVRPLTMRIVSKNSEEESMNQNHFIITICIVLVTTILGTLVGQNSILTAFFFGLCLPDGP 237 (709)
Q Consensus 158 ~~~~~~~~~~~i~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~~~vl~~~l~~~~~~~~~G~~~~lGaf~~Gl~ip~~~ 237 (709)
..+ .+...+++.++.+++.|+..+|+.|+.+++++ +|.+..+++.++++.++++|.+|.|+++|||++|+++++.
T Consensus 169 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~la~~~g~s~~lgaf~aGl~~~~~- 243 (273)
T TIGR00932 169 LAL---LLLKVFLAFLLLVLLGRWLLRPVLRLTAELRP-SELFTAGSLLLMFGSAYFADLLGLSMALGAFLAGVVLSES- 243 (273)
T ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHcCC-
Confidence 223 34445555666677888999999998876543 5778888999999999999999999999999999999996
Q ss_pred ChhhHHHhhhhhhhHhhhhHHHHHHhhhccc
Q 036516 238 PLGTQLVQKLDFFTSGFLLPVFCAISGIRME 268 (709)
Q Consensus 238 ~~~~~l~~kl~~~~~~~flPlFF~~~G~~~d 268 (709)
+.++++.++++++. ++|+|+||+++|+++|
T Consensus 244 ~~~~~l~~~l~~~~-~~f~plFF~~~G~~~~ 273 (273)
T TIGR00932 244 EYRHKLESDLEPIG-GVLLPLFFISVGMSVD 273 (273)
T ss_pred chHHHHHHHHHhHH-HHHHHHHHHHhCccCC
Confidence 45788999999998 9999999999999987
No 9
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=100.00 E-value=5.9e-36 Score=328.34 Aligned_cols=346 Identities=25% Similarity=0.407 Sum_probs=84.7
Q ss_pred CcEEEcccccccccccCccCCCCc-HHHHHHHHHHHHHHHHHHHhhhcChHHHHhhhhhHHHHHHHHHHHHHHH-HHHHH
Q 036516 1 GGALMGPSLLREIPYLDGLFPMGS-RYVLRTFAEFGMILHAFVLGVQIDLGLVKHIRKRAVIIGITSTLLPLVF-GLSSF 78 (709)
Q Consensus 1 aGiilGPs~Lg~~~~~~~~fp~~~-~~~l~~la~iGli~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~ip~~~-g~~~~ 78 (709)
+|+++||.+++.+ ++ ...++.++++|+.++||.+|+|+|.+.+||++|+++.+++.++++|+++ ++.+.
T Consensus 29 ~Gi~lg~~~~~~~---------~~~~~~~~~l~~i~l~~llF~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (380)
T PF00999_consen 29 VGIVLGPSGLGLL---------EPDNPSFELLAEIGLAFLLFEAGLELDIKELRRNWRRALALGLVGFLLPFILVGFLLS 99 (380)
T ss_dssp ----------------------------S-SSHHHHS--SSHHHHTTGGGG-----------------------------
T ss_pred heeehhhhhhhhc---------cchhhHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccceeeehhhHHHHHHH
Confidence 5899999988855 22 4788899999999999999999999999999999999999999999998 77666
Q ss_pred HHHhhhccCCchhhHHHHHHHHHHhhchHHHHHHHHHHhccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccc
Q 036516 79 RIVQRISHLDDETASSIAASVVVNSMTSLVVITGLLKELKMLNSELGRLAASITIVSHIFGWSASMILLSVRDSQDNLTT 158 (709)
Q Consensus 79 ~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~el~ll~s~~G~lals~a~v~D~~~~~ll~i~~~~~~~~~~~~~ 158 (709)
+++.. . +..+..++++|.+++.||++++.++++|.+..+++.++++.+.+++||+++++++.+.....+.+.....
T Consensus 100 ~~~~~-~---~~~~~~al~l~~~~~~ts~~~v~~~l~~~~~~~~~~~~~~~~~~~i~d~~~i~~~~~~~~~~~~~~~~~~ 175 (380)
T PF00999_consen 100 FFLFI-L---GLSWAEALLLGAILSATSPAIVSPVLKELGLLPSRLGRLLLSESVINDIIAIILLSILISLAQASGQSSL 175 (380)
T ss_dssp ------------------TTHHHHTT--HHHHHHHH-HHHT-SSTTHHHHTTTTTTTTTTTTTTT---------------
T ss_pred Hhhcc-c---hhhhHHHhhhHHhhhcccccchhhhhhhhhcccccccchhhhhchhhccchhhhhhhhhhhhcccccccc
Confidence 43210 0 1125788999999999999999999999999999999999999999999999998887776522211111
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHhcCCCCC
Q 036516 159 IKPLYITLVVIVYYIIVIFLVRPLTMRIVSKNSEEESMNQNHFIITICIVLVTTILGTLVGQNSILTAFFFGLCLPDGPP 238 (709)
Q Consensus 159 ~~~~~~~~~~i~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~~~vl~~~l~~~~~~~~~G~~~~lGaf~~Gl~ip~~~~ 238 (709)
.+....++..+...++..++.+.+..|+.|+. ++.++.+..+++++++.+++++|.+|.++++|+|++|+++++ .+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~a~~~g~s~~l~af~~Gl~~~~-~~ 251 (380)
T PF00999_consen 176 GQLLLSFLWIILIGIVIGLLFGWLLRRLIRRA---SPSSEIFILLVLALILLLYGLAEILGLSGILGAFIAGLILSN-SP 251 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cchhcchhhhhhhheeeecccchHHHHhhhhc---cccchhhHHHHHHHHhhhccccccccccccceeeeeehcccc-cc
Confidence 11001222333333333444444444444442 234677888999999999999999999999999999999995 46
Q ss_pred hhhHHHhhhhhhhHhhhhHHHHHHhhhcccccccc--chhhHHHHHHHHHHHHHHHHHHHHhHhhhCCCHHHHHHHHHHh
Q 036516 239 LGTQLVQKLDFFTSGFLLPVFCAISGIRMELYLIN--EKSFIKIEFIILMSYLGKFTGVMVPSLFFGMSFLKASCLALIM 316 (709)
Q Consensus 239 ~~~~l~~kl~~~~~~~flPlFF~~~G~~~d~~~l~--~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m 316 (709)
.++++.|+++++.++++.|+||+++|+++|++.+. ...+.....+.+..+++|++++++.+++.|.++||+..+|+.|
T Consensus 252 ~~~~~~~~l~~~~~~~~~~lfF~~iG~~~~~~~l~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (380)
T PF00999_consen 252 FAERLEEKLESFWYGFFIPLFFVFIGMSLDFSSLFNSPSVIILVLLLLIAILLGKFIGVYLASRLFGIPWKEALFIGLGM 331 (380)
T ss_dssp -----------------------------------------------------------------------HHHHTTTTS
T ss_pred ccchhhhcccchhhHHHhhHHhhhhcccccccccccchhhhhhHHHHHHHHHHhhhceeehhhhhcccccchhHHHHHhh
Confidence 77889999999988999999999999999998885 3356556666667778999999999999999999999999999
Q ss_pred hhhhhHHHHHHHhhhccCccchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 036516 317 CCRGIAEIAVYCMWKDRKIITNQIFAIMITNMVIITGISTTIVGYLY 363 (709)
Q Consensus 317 ~~kG~~~l~~~~~~~~~~~i~~~~~~~lv~~~ll~t~i~~plv~~ly 363 (709)
++||+++++++..+.+.|.++++.+++++.++++++.+.|+.++.+.
T Consensus 332 ~~~g~~~l~la~~~~~~~~~~~~~~~~~~~~vl~t~ii~~~~~~~l~ 378 (380)
T PF00999_consen 332 LPRGEVSLALALIALNLGIISEQMFTIIIAAVLLTIIIAGIILSPLL 378 (380)
T ss_dssp S--HHHHHHHHHHHHH-------------------------------
T ss_pred cCccHHHHHHHHHHHhcCCCCHHHHHHheeeeeeHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999998888887777654
No 10
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=3e-29 Score=247.97 Aligned_cols=343 Identities=17% Similarity=0.210 Sum_probs=278.6
Q ss_pred CcEEEcccccccccccCccCCCCcHHHHHHHHHHHHHHHHHHHhhhcChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 036516 1 GGALMGPSLLREIPYLDGLFPMGSRYVLRTFAEFGMILHAFVLGVQIDLGLVKHIRKRAVIIGITSTLLPLVFGLSSFRI 80 (709)
Q Consensus 1 aGiilGPs~Lg~~~~~~~~fp~~~~~~l~~la~iGli~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~ip~~~g~~~~~~ 80 (709)
||++.||.--|.. .+...-..++++|++++||-+|++.+++.+......++--++.++.+-...|++++..
T Consensus 39 AGv~~gpftpGFv---------ad~~La~~LAelGViLLmFgvGLhfslkdLLavk~iAipgAl~qia~at~lg~gL~~~ 109 (408)
T COG4651 39 AGVLAGPFTPGFV---------ADQTLAPELAELGVILLMFGVGLHFSLKDLLAVKAIAIPGALAQIALATLLGMGLSSL 109 (408)
T ss_pred HHHhcCCCCCCcc---------cchhHHHHHHHhhHHHHHHhcchheeHHHHhhHHHHhcchHHHHHHHHHHHHhHHHHH
Confidence 6888999877766 4455566999999999999999999999998887777777777777777888888887
Q ss_pred HhhhccCCchhhHHHHHHHHHHhhchHHHHHHHHHHhccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCC--C-
Q 036516 81 VQRISHLDDETASSIAASVVVNSMTSLVVITGLLKELKMLNSELGRLAASITIVSHIFGWSASMILLSVRD--SQD--N- 155 (709)
Q Consensus 81 l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~el~ll~s~~G~lals~a~v~D~~~~~ll~i~~~~~~--~~~--~- 155 (709)
++..+ ...+.+|.++|..|+.|+.|-|+|.++.+++-||++++.-++.|+..++.+...-++.. ++. .
T Consensus 110 lgws~-------~~glvfGlaLS~aSTVvllraLqEr~lidt~rG~iAiGwLiveDl~mVl~Lvllpa~a~~~g~~~~~~ 182 (408)
T COG4651 110 LGWSF-------GTGIVFGLALSVASTVVLLRALEERQLIDTQRGRIAIGWLIVEDLAMVLALVLLPALAGVLGQGDVGF 182 (408)
T ss_pred cCCCc-------ccceeeeehhhhHHHHHHHHHHHHhccccccCceEEEeehhHHHHHHHHHHHHhHHHHhhhccccccc
Confidence 76654 34678899999999999999999999999999999999999999999988876655432 111 1
Q ss_pred ccchhhH-HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHH-HHhchhHhHHHHHHHHhc
Q 036516 156 LTTIKPL-YITLVVIVYYIIVIFLVRPLTMRIVSKNSEEESMNQNHFIITICIVLVTTILG-TLVGQNSILTAFFFGLCL 233 (709)
Q Consensus 156 ~~~~~~~-~~~~~~i~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~~~vl~~~l~~~~~~-~~~G~~~~lGaf~~Gl~i 233 (709)
....+.+ .+..+...|++++.++.|++..|+..+..... ..|.+...++.++++.++.+ +.+|.++.+|||++|+++
T Consensus 183 ~~~~~~l~~Tl~Kv~af~alml~VgrrviPw~le~~a~tG-srElf~L~vla~ALgVa~Ga~~LfgvsfaLGAffaGMvL 261 (408)
T COG4651 183 ATLLVDLGITLGKVAAFIAIMLVVGRRLIPWILERVAATG-SRELFTLAVLAIALGVAFGAAELFGVSFALGAFFAGMVL 261 (408)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-cHHHHHHHHHHHHHHHhhccceeeccchhHHHHHHHHHh
Confidence 1112211 26668889999999999999999998864322 36888899999999988776 889999999999999999
Q ss_pred CCCCChhhHHHhhhhhhhHhhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHhHhhhCCCHHHHHHHH
Q 036516 234 PDGPPLGTQLVQKLDFFTSGFLLPVFCAISGIRMELYLINEKSFIKIEFIILMSYLGKFTGVMVPSLFFGMSFLKASCLA 313 (709)
Q Consensus 234 p~~~~~~~~l~~kl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg 313 (709)
.+. .+.++..|..-+. ++.|.-+||+++||.+|+..+.++.+.. .....+...+|-+..+...+.++.|.|.++.++
T Consensus 262 ~es-elshraa~~slpL-rdaFaVlFFvsVGmlf~P~~l~~~pl~v-latllii~~gKs~aaf~ivr~Fg~~~~TaLtis 338 (408)
T COG4651 262 AES-ELSHRAAEDSLPL-RDAFAVLFFVSVGMLFDPMILIQQPLAV-LATLLIILFGKSVAAFFIVRAFGHPVRTALTIS 338 (408)
T ss_pred cch-hhhHHHHHhccCH-HHHHHHHHHHHhhhhcCcHHhhcchHHH-HHHHHHHHhhhHHHHHHHHHHhCCcchHHHHHH
Confidence 986 4677777766665 8889999999999999998877654543 334445567999999999999999999999999
Q ss_pred HHhhhhhhHHHHHHHhhhccCccchhHHHHHHHHHHHHHHHHHHHHHhhcC
Q 036516 314 LIMCCRGIAEIAVYCMWKDRKIITNQIFAIMITNMVIITGISTTIVGYLYD 364 (709)
Q Consensus 314 ~~m~~kG~~~l~~~~~~~~~~~i~~~~~~~lv~~~ll~t~i~~plv~~ly~ 364 (709)
..+.+.|+++++++..|.+.+++++.--..++...++ +++..|+.....+
T Consensus 339 ~SLaqigEFsfIlaGLgi~l~llp~~gr~Lvlagail-sIl~nPllf~~~d 388 (408)
T COG4651 339 ASLAQIGEFSFILAGLGIKLNLLPEAGRDLVLAGAIL-SILLNPLLFALLD 388 (408)
T ss_pred HHHHhhhhHHHHHHHHhhhhccCcHHHHHHHHHHHHH-HHHHhHHHHHHHH
Confidence 9999999999999999999999996555555444444 7777888765543
No 11
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=99.91 E-value=1.1e-21 Score=223.01 Aligned_cols=322 Identities=12% Similarity=0.090 Sum_probs=228.2
Q ss_pred CcEEEcccccccccccCccCCCCcHHHHHHHHHHHHHHHHHHHhhhcChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 036516 1 GGALMGPSLLREIPYLDGLFPMGSRYVLRTFAEFGMILHAFVLGVQIDLGLVKHIRKRAVIIGITSTLLPLVFGLSSFRI 80 (709)
Q Consensus 1 aGiilGPs~Lg~~~~~~~~fp~~~~~~l~~la~iGli~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~ip~~~g~~~~~~ 80 (709)
+|+++||.+++.++..++ .......++ ++++++++.+|..|++++.+.+++.++..+.+.+.++.+.++++.+++++
T Consensus 47 ~GiilGP~~l~~idP~~~--g~~d~i~le-IteIvL~I~LFa~Gl~L~~~~Lrr~wrsV~rLl~~~M~lT~livAL~a~~ 123 (810)
T TIGR00844 47 FGLIVGPHCLNWFNPLSW--GNTDSITLE-ISRILLCLQVFAVSVELPRKYMLKHWVSVTMLLVPVMTSGWLVIALFVWI 123 (810)
T ss_pred HHHHhhhhhhccCChhhc--ccchHHHHH-HHHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999886511110 001233445 99999999999999999999999999999999999998888888877776
Q ss_pred HhhhccCCchhhHHHHHHHHHHhhchHHHHHHHHH---HhccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-C-CC
Q 036516 81 VQRISHLDDETASSIAASVVVNSMTSLVVITGLLK---ELKMLNSELGRLAASITIVSHIFGWSASMILLSVRDS-Q-DN 155 (709)
Q Consensus 81 l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~---el~ll~s~~G~lals~a~v~D~~~~~ll~i~~~~~~~-~-~~ 155 (709)
+...+ .|..++++|++++.|.+.....+++ ..+ +..++..++.+.+.+||.++++++.+...+... + ..
T Consensus 124 Li~GL-----~~~~ALLLGAILAPTDPVLAssV~kg~~~~r-vP~rLR~lL~~ESGlNDGlAfpfv~LaL~ll~~~~~g~ 197 (810)
T TIGR00844 124 LVPGL-----NFPASLLMGACITATDPVLAQSVVSGTFAQK-VPGHLRNLLSCESGCNDGLAFPFVFLSMDLLLYPGRGG 197 (810)
T ss_pred HHcCC-----CHHHHHHHHhhhcCCcHHHHHHHHhcccccc-CChHHHhHHhhhhhcccHHHHHHHHHHHHHHhccCccc
Confidence 63222 2688999999999999655556555 223 457788889999999999999877655444321 1 11
Q ss_pred -c--cch-h-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHHHhchhHhHHHHHHH
Q 036516 156 -L--TTI-K-PLYITLVVIVYYIIVIFLVRPLTMRIVSKNSEEESMNQNHFIITICIVLVTTILGTLVGQNSILTAFFFG 230 (709)
Q Consensus 156 -~--~~~-~-~~~~~~~~i~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~~~vl~~~l~~~~~~~~~G~~~~lGaf~~G 230 (709)
. .++ . .++.++..+++.++++++.++++.|+.+|... -.+.+..+.++++++++.+++.+|.+.++++|++|
T Consensus 198 ~~~~~w~l~~~L~~i~~GiliG~vvG~l~~~Ll~~l~rr~~i---~~esfla~~LaLAli~~gla~lLggSGfLAVFVAG 274 (810)
T TIGR00844 198 EIVKDWICVTILWECIFGSILGCIIGYCGRKAIRFAEGKNII---DRESFLAFYLILALTCAGFGSMLGVDDLLVSFFAG 274 (810)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---chhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 1 121 1 01133333344444444555555554433221 13456667788888889999999999999999999
Q ss_pred HhcCCCCChhhH-HHhhhhhhhHhhhhHHHHHHhhhccccccccc-----hhhHHHHHHHHHHHHHHHHHHHHhHhhh--
Q 036516 231 LCLPDGPPLGTQ-LVQKLDFFTSGFLLPVFCAISGIRMELYLINE-----KSFIKIEFIILMSYLGKFTGVMVPSLFF-- 302 (709)
Q Consensus 231 l~ip~~~~~~~~-l~~kl~~~~~~~flPlFF~~~G~~~d~~~l~~-----~~~~~~~~ii~~~~~~K~~~~~l~~~~~-- 302 (709)
+++.+.....+. -...+......++..++|+++|+.+....+.. ..|..+++.+++.++.|+.++++.+.+.
T Consensus 275 l~~gn~~~~~~~~~~~~f~e~ie~LLn~~lFVlLGa~L~~~~l~~~~l~~~~w~~ilLaL~LifVrRPpaVlll~~li~~ 354 (810)
T TIGR00844 275 TAFAWDGWFAQKTHESNVSNVIDVLLNYAYFVYLGSILPWKDFNNGDIGLDVWRLIILSLVVIFLRRIPAVLILKPLIPD 354 (810)
T ss_pred HHHhcccchhhhHHHhhHHHHHHHHHHHHHHHHHHHhhCHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 999986433222 22335556677888999999999998766643 2355556666677788888887754443
Q ss_pred CCCHHHHHHHHHHhhhhhhHHHHHHHhhhccCc
Q 036516 303 GMSFLKASCLALIMCCRGIAEIAVYCMWKDRKI 335 (709)
Q Consensus 303 ~~~~~~~~~lg~~m~~kG~~~l~~~~~~~~~~~ 335 (709)
..+++|++++|| ..+||..++.++.++++.+.
T Consensus 355 ~~s~rErlFigW-FGpRGIGSIyyl~~A~~~~~ 386 (810)
T TIGR00844 355 IKSWREAMFIGH-FGPIGVGAVFAAILSKSQLE 386 (810)
T ss_pred CCCHHHHHHhee-eccccHHHHHHHHHHHHhhh
Confidence 368999999999 89999999999999987664
No 12
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=99.89 E-value=9.7e-21 Score=214.41 Aligned_cols=319 Identities=13% Similarity=0.069 Sum_probs=216.1
Q ss_pred HHHHHHHHHHHHHhhhcChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHhhchHHHH
Q 036516 31 FAEFGMILHAFVLGVQIDLGLVKHIRKRAVIIGITSTLLPLVFGLSSFRIVQRISHLDDETASSIAASVVVNSMTSLVVI 110 (709)
Q Consensus 31 la~iGli~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~ip~~~g~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv 110 (709)
+-.+++..++|..|+++|++.+||+++....+++.++++|++++....+++.+. ++..++++|+++|.|+++++
T Consensus 51 ~~~~~Lp~lLF~~g~~~~~~~l~~~~~~i~~la~~~vlit~~~v~~~~~~~~~l------~~~~alllGails~TDpvav 124 (525)
T TIGR00831 51 VLFLFLPPLLFEAAMNTDLRELRENFRPIALIAFLLVVVTTVVVGFSLNWILGI------PLALALILGAVLSPTDAVAV 124 (525)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------cHHHHHHHHHHhCCCCHHHH
Confidence 445899999999999999999999999999999999999998876666654332 26889999999999999999
Q ss_pred HHHHHHhccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--C-ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036516 111 TGLLKELKMLNSELGRLAASITIVSHIFGWSASMILLSVRDSQD--N-LTTIKPLYITLVVIVYYIIVIFLVRPLTMRIV 187 (709)
Q Consensus 111 ~~iL~el~ll~s~~G~lals~a~v~D~~~~~ll~i~~~~~~~~~--~-~~~~~~~~~~~~~i~~~~~~~~v~r~~~~~i~ 187 (709)
.+++++.++ ++++.+++.+.+.+||..+++++.+...+..++. + ....+ .++..++..+++++++..+..|+.
T Consensus 125 ~~il~~~~~-p~rl~~il~gESllND~~alvlf~~~~~~~~~~~~~~~~~~~~---~f~~~~~~gi~vG~~~g~~~~~l~ 200 (525)
T TIGR00831 125 LGTFKSIRA-PKKLSILLEGESLLNDGAALVVFAIAVAVALGKGVFDPLNAAL---DFAVVCVGGIAAGLAVGYLAYRLL 200 (525)
T ss_pred HHHHhcCCC-CHHHHHHHhhhhhhcchHHHHHHHHHHHHHhcCCCCcHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999874 7889999999999999999999988877664321 1 11122 222222233333444445555555
Q ss_pred hhcccCCCCchhHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHhcCCCCCh-h--hH---HHhhhhhhhHhhhhHHHHH
Q 036516 188 SKNSEEESMNQNHFIITICIVLVTTILGTLVGQNSILTAFFFGLCLPDGPPL-G--TQ---LVQKLDFFTSGFLLPVFCA 261 (709)
Q Consensus 188 ~~~~~~~~~~e~~~~~vl~~~l~~~~~~~~~G~~~~lGaf~~Gl~ip~~~~~-~--~~---l~~kl~~~~~~~flPlFF~ 261 (709)
|+..+. +.....+++++.+++++++|.+|.|+++++|++|+++++..+. . .+ -.+.+-.....++-+++|+
T Consensus 201 ~~~~~~---~~~~~~l~l~~~~~~y~lAe~lg~SgilAvv~aGl~l~~~~~~~~~~~~~~~~~~~fw~~l~~ll~~~iFv 277 (525)
T TIGR00831 201 RAKIDD---PLVEIALTILAPFAGFLLAERFHFSGVIAVVAAGLILTNYGRDFSMSPTTRLIALDFWSVIVFLVNGIIFI 277 (525)
T ss_pred HHhccc---cHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHccccccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 543222 3345678888899999999999999999999999999975433 1 11 1223334457788999999
Q ss_pred Hhhhcccccc--ccc-h--h-----hHH---HHHHHHHHHHHHHHHHHHh--Hhh-----hCCCHHHHHHHHHHhhhhhh
Q 036516 262 ISGIRMELYL--INE-K--S-----FIK---IEFIILMSYLGKFTGVMVP--SLF-----FGMSFLKASCLALIMCCRGI 321 (709)
Q Consensus 262 ~~G~~~d~~~--l~~-~--~-----~~~---~~~ii~~~~~~K~~~~~l~--~~~-----~~~~~~~~~~lg~~m~~kG~ 321 (709)
.+|+++.... ... . . +.. .+++.......+++..+.. .++ .++++|+.+.++| .+.||.
T Consensus 278 llGl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~r~~~v~~w-~G~RG~ 356 (525)
T TIGR00831 278 LIGVQTPGTIFSAWKEILVAPAAVILALFTNAFVIYPVMTYVRFLWTMKPFSNRFLKKKPMEFGTRWKHVVSW-AGLRGA 356 (525)
T ss_pred HHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCChhhHHHhee-ccchHH
Confidence 9999986311 111 0 0 100 1111122333455433322 111 2478999999999 789999
Q ss_pred HHHHHHHhh-hc--cC--c-----cchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 036516 322 AEIAVYCMW-KD--RK--I-----ITNQIFAIMITNMVIITGISTTIVGYLY 363 (709)
Q Consensus 322 ~~l~~~~~~-~~--~~--~-----i~~~~~~~lv~~~ll~t~i~~plv~~ly 363 (709)
++++++..- .. .| . +-.-+|.+++++.++.....||+++++-
T Consensus 357 vslA~al~~p~~~~~g~~~p~r~~i~~~~~~vVl~TllvqG~tlp~l~r~l~ 408 (525)
T TIGR00831 357 IPLALALSFPNQLLSGMAFPARYELVFLAAGVILFSLLVQGISLPIFVKRKF 408 (525)
T ss_pred HHHHHHHHccccccCCCCCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcC
Confidence 999877422 11 11 1 1123344555555555555677777754
No 13
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=99.83 E-value=1e-17 Score=184.76 Aligned_cols=346 Identities=13% Similarity=0.128 Sum_probs=248.3
Q ss_pred cEEEcccccccccccCccCCCCcHHHHHHHHHHHHHHHHHHHhhhcChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 036516 2 GALMGPSLLREIPYLDGLFPMGSRYVLRTFAEFGMILHAFVLGVQIDLGLVKHIRKRAVIIGITSTLLPLVFGLSSFRIV 81 (709)
Q Consensus 2 GiilGPs~Lg~~~~~~~~fp~~~~~~l~~la~iGli~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~ip~~~g~~~~~~l 81 (709)
|++.||.+++.. +++....-+.+-.+.+..++|..|+|+|.+.++|+++....+++.+.+++.+......+++
T Consensus 40 g~i~g~~~l~~~-------~~~~~~~~el~~~l~l~ilLf~~g~~l~~~~l~~~~~~I~~La~~~v~it~~~~g~~~~~l 112 (429)
T COG0025 40 GLLGGPPGLNLI-------SPDLELDPELFLVLFLAILLFAGGLELDLRELRRVWRSILVLALPLVLITALGIGLLAHWL 112 (429)
T ss_pred HHHHhhhhhccc-------cccccCChHHHHHHHHHHHHHHhHhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677766655 1112222333449999999999999999999999999999999999998887766666666
Q ss_pred hhhccCCchhhHHHHHHHHHHhhchHHHHHHHHHHhccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc---cc
Q 036516 82 QRISHLDDETASSIAASVVVNSMTSLVVITGLLKELKMLNSELGRLAASITIVSHIFGWSASMILLSVRDSQDNL---TT 158 (709)
Q Consensus 82 ~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~el~ll~s~~G~lals~a~v~D~~~~~ll~i~~~~~~~~~~~---~~ 158 (709)
.+. .++..++.+|+++|.|++..+.++.++.+ ...++.++..+.+.+||..+++++.+...+..++... ..
T Consensus 113 ~~~-----i~~~~a~l~gAilspTDPv~v~~i~~~~~-vp~ri~~iL~gESl~ND~~giv~f~~~l~~~~~~~~~~~~~~ 186 (429)
T COG0025 113 LPG-----IPLAAAFLLGAILSPTDPVAVSPIFKRVR-VPKRIRTILEGESLLNDGVGIVLFKVALAALLGTGAFSLGWA 186 (429)
T ss_pred hCC-----hhHHHHHHHhHHhcCCCchhhHHHHhcCC-CCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCchhHH
Confidence 332 23678999999999999888899988866 6789999999999999999999998887766533211 11
Q ss_pred hh-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHhcC---
Q 036516 159 IK-PLYITLVVIVYYIIVIFLVRPLTMRIVSKNSEEESMNQNHFIITICIVLVTTILGTLVGQNSILTAFFFGLCLP--- 234 (709)
Q Consensus 159 ~~-~~~~~~~~i~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~~~vl~~~l~~~~~~~~~G~~~~lGaf~~Gl~ip--- 234 (709)
.. .+...+..++...+..++.+++++|+.+|. .. .........+...+....++|.+|.+++++.+++|+...
T Consensus 187 ~~~fl~~~~~g~~~G~~iG~l~~~l~~~~~~~~--~~-~~~~~~~i~L~~~~~~~~~a~~l~~SGilAvvvaG~~~~~~~ 263 (429)
T COG0025 187 LLLFLIEALGGILLGLLLGYLLGRLLRRLDRRG--WT-SPLLETLLTLLLAFAAYLLAEALGVSGILAVVVAGLVLGEAV 263 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--cc-chHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHhhhh
Confidence 11 011333333444445555555555555442 11 134567889999999999999999999999999998774
Q ss_pred C--CCChh-hHHHhhhhhhhHhhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHhHhhhC------CC
Q 036516 235 D--GPPLG-TQLVQKLDFFTSGFLLPVFCAISGIRMELYLINEKSFIKIEFIILMSYLGKFTGVMVPSLFFG------MS 305 (709)
Q Consensus 235 ~--~~~~~-~~l~~kl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~------~~ 305 (709)
. ..+.. +...+.+......++--+.|+..|++++........++..+++++..+++|++++++..+..+ .+
T Consensus 264 ~~~~~~~~~~~~~~~fwe~l~~~ln~~iFiLlG~~i~~~~~~~~~~~~~l~~~~~~~v~R~~~V~~~~~~~~~~~~~~~~ 343 (429)
T COG0025 264 RINLSPASARLRLSSFWEVLDFLLNGLLFVLLGAQLPLSLLLALGLLGLLVALVAVLLARPLWVFLSLKGSNLKLRDPLP 343 (429)
T ss_pred hhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCC
Confidence 1 11212 333344555567778889999999999987766545666777788889999999999888743 89
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHhhhcc-C-----ccchhHHHHHHHHHHHHHHHHHHHHHhhcC
Q 036516 306 FLKASCLALIMCCRGIAEIAVYCMWKDR-K-----IITNQIFAIMITNMVIITGISTTIVGYLYD 364 (709)
Q Consensus 306 ~~~~~~lg~~m~~kG~~~l~~~~~~~~~-~-----~i~~~~~~~lv~~~ll~t~i~~plv~~ly~ 364 (709)
++|++.++| -++||.+.++++...... . .+-.-.+.+++.++++.+...+|+.++...
T Consensus 344 ~~~~~~l~w-~G~RG~vsla~al~~p~~~~~~~~~~i~~i~~~vIl~Sl~v~g~t~~~l~~~~~~ 407 (429)
T COG0025 344 WRERLFLSW-AGPRGVVSLALALLIPLELPGPARELILFIVFLVILFSLLVQGLTLPPLAKKLEV 407 (429)
T ss_pred HHHHHHHhh-cccccHHHHHHHHHchhhccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc
Confidence 999999999 799999999987655421 1 222233445555555555556777776553
No 14
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=99.80 E-value=3e-17 Score=185.95 Aligned_cols=328 Identities=11% Similarity=0.065 Sum_probs=222.3
Q ss_pred HHHHHHHHHHHHHHHhhhcChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcc--CCchhhHHHHHHHHHHhhch
Q 036516 29 RTFAEFGMILHAFVLGVQIDLGLVKHIRKRAVIIGITSTLLPLVFGLSSFRIVQRISH--LDDETASSIAASVVVNSMTS 106 (709)
Q Consensus 29 ~~la~iGli~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~ip~~~g~~~~~~l~~~~~--~~~~~~~~~l~l~~~ls~Ts 106 (709)
+.+-.+.+-.++|..|+++|.+.++++.+..+..|+.|+++..++.....+++..... ....++..++.+|+++|.|+
T Consensus 66 ~lf~~~~LPpIlFe~g~~l~~~~f~~n~~~Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~~~allfGAiiSaTD 145 (559)
T TIGR00840 66 SYFFLYLLPPIVLDAGYFMPQRNFFENLGSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVD 145 (559)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCHHHHHHHhHHhcCCc
Confidence 4455567788999999999999999999999999999999988765555554432111 11224788999999999999
Q ss_pred HHHHHHHHHHhccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCccc--h-hhHHH-HHHHHHHHHHHHHHHHH
Q 036516 107 LVVITGLLKELKMLNSELGRLAASITIVSHIFGWSASMILLSVRDSQ-DNLTT--I-KPLYI-TLVVIVYYIIVIFLVRP 181 (709)
Q Consensus 107 ~~vv~~iL~el~ll~s~~G~lals~a~v~D~~~~~ll~i~~~~~~~~-~~~~~--~-~~~~~-~~~~i~~~~~~~~v~r~ 181 (709)
+..+..++++.+ .+.++-.++.+.+.+||.++++++.++..+...+ ....+ + ..... +...++ .++++++...
T Consensus 146 PVAVlai~~~~~-v~~~L~~ll~gESllNDavaIVLf~~~~~~~~~~~~~~~~~~~~~~i~~f~~~~~G-GiliG~v~G~ 223 (559)
T TIGR00840 146 PVAVLAVFEEYH-VNEKLYIIIFGESLLNDAVTVVLYNTFIKFHKTADEPVTIVDVFEGCASFFVVTCG-GLLVGVVFGF 223 (559)
T ss_pred hHHHHHHHHhcC-CCcchhhheehhhhhhccHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 999999999988 5889999999999999999999998777765421 11111 1 10001 111111 3344444555
Q ss_pred HHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHhcCCC-----CChhhHHHhhhhhhhHhhhh
Q 036516 182 LTMRIVSKNSEEESMNQNHFIITICIVLVTTILGTLVGQNSILTAFFFGLCLPDG-----PPLGTQLVQKLDFFTSGFLL 256 (709)
Q Consensus 182 ~~~~i~~~~~~~~~~~e~~~~~vl~~~l~~~~~~~~~G~~~~lGaf~~Gl~ip~~-----~~~~~~l~~kl~~~~~~~fl 256 (709)
+..++.|+.... +.....+++++.++++.++|.+|.+++++.+++|+++.+. .+..+.-.+.+-.....+.-
T Consensus 224 l~~~l~r~~~~~---~~~e~~l~l~~~yl~Y~lAE~l~~SGiLAvv~aGl~~~~y~~~n~s~~~~~~~~~f~~~ls~l~e 300 (559)
T TIGR00840 224 LVAFITRFTHHI---RQIEPLFVFLISYLSYLFAETLHLSGILALIFCGITMKKYVEANMSRRSQTTIKYFMKMLSSLSE 300 (559)
T ss_pred HHHHHHHHhccc---chhHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHHHHHHHH
Confidence 566666665332 2345667788888899999999999999999999999642 22222223344444567788
Q ss_pred HHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHhHhh------hCCCHHHHHHHHHHhhhhhhHHHHHHHhh
Q 036516 257 PVFCAISGIRMELYLINEKSFIKIEFIILMSYLGKFTGVMVPSLF------FGMSFLKASCLALIMCCRGIAEIAVYCMW 330 (709)
Q Consensus 257 PlFF~~~G~~~d~~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~------~~~~~~~~~~lg~~m~~kG~~~l~~~~~~ 330 (709)
.+.|++.|+.+-... ....|...++.++++++.|+++.+..++. .+.+++|.+.+++ .+.||.+.++++...
T Consensus 301 ~~IFvlLGl~l~~~~-~~~~~~~i~~~l~~~ll~R~l~V~~~~~~~~~~~~~~~~~~e~~il~w-~GlRGaVa~aLAl~l 378 (559)
T TIGR00840 301 TLIFIFLGVSLVTEN-HEWNWAFVVATLSFCVIYRVLGVRTLSWITNEFRPVEIPYKDQLVIFY-AGLRGAVAFALALLL 378 (559)
T ss_pred HHHHHHHHHHHhcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChhhhhheee-eccccHHHHHHHHhC
Confidence 899999999763221 11134444445556678899888766543 3589999999998 788999999887654
Q ss_pred hccCccchhHHHH-----HHHHHHHHHHHHHHHHHhhc
Q 036516 331 KDRKIITNQIFAI-----MITNMVIITGISTTIVGYLY 363 (709)
Q Consensus 331 ~~~~~i~~~~~~~-----lv~~~ll~t~i~~plv~~ly 363 (709)
-+.+.-..+.+.. +++++++.....+|+++++.
T Consensus 379 ~~~~~~~~~~i~~~t~~VVl~TvlvqG~T~~pl~~~L~ 416 (559)
T TIGR00840 379 DEKIFPYKFLFVTTTLVVVFFTVIFQGGTIKPLVEVLK 416 (559)
T ss_pred CCCCcchHHHHHHHHHeeehHHHHHHHhhHHHHHHHhC
Confidence 3332222333322 33333444444578888764
No 15
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.80 E-value=1.4e-16 Score=171.03 Aligned_cols=303 Identities=15% Similarity=0.237 Sum_probs=199.7
Q ss_pred HHHHHHHHHHHH-HHHHHHhhhcChHHHH---hhhhhH---HHHHHHHHHHHHHHHHHHHHHHhhhccCCchhhHHHHHH
Q 036516 26 YVLRTFAEFGMI-LHAFVLGVQIDLGLVK---HIRKRA---VIIGITSTLLPLVFGLSSFRIVQRISHLDDETASSIAAS 98 (709)
Q Consensus 26 ~~l~~la~iGli-~~lF~~Gle~d~~~l~---~~~~~~---~~i~~~~~~ip~~~g~~~~~~l~~~~~~~~~~~~~~l~l 98 (709)
..+..+-+=|++ +|.|.+|+|++-+.+. ++.||+ ..-++.|+++|.++-. .+....+ ...--+
T Consensus 60 ~~l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~~~a~lP~~aAlGGm~vPaliy~----~~n~~~~------~~~~GW 129 (423)
T PRK14853 60 LSLGTWAADGLLAIFFFVVGLELKREFVAGDLRDPSRAALPVAAALGGMIVPALIYV----AVNLAGG------GALRGW 129 (423)
T ss_pred CCHHHHHHHhhHHHHHHHHHHHHhHHHhccchhhHHHHHHHHHHHHHhHHHHHHHHH----HHhCCch------hhhhhh
Confidence 355666666766 8889999999776553 233333 3567888999986522 2221110 111222
Q ss_pred HHHHhhchHHHHHHHHHHhcc-ccChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccchhhHHHHHHHHHHHHHHHH
Q 036516 99 VVVNSMTSLVVITGLLKELKM-LNSELGRLAASITIVSHIFGWSASMILLSVRDSQDNLTTIKPLYITLVVIVYYIIVIF 177 (709)
Q Consensus 99 ~~~ls~Ts~~vv~~iL~el~l-l~s~~G~lals~a~v~D~~~~~ll~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 177 (709)
.+-+.|+.+....+|..+|- ..+.++...++.|++||+.++++++++.+ ++ ....+ .......+. ++
T Consensus 130 -~Ip~ATDIAFalgvLallG~rvp~~l~~FLlaLAIvDDl~AIiVIAlfYt---~~--i~~~~---L~~a~~~~~--~l- 197 (423)
T PRK14853 130 -AIPTATDIAFALAVLAVIGTHLPSALRTFLLTLAVVDDLLAITVIAVFYT---SE--LNLEA---LLLALVPLA--LF- 197 (423)
T ss_pred -hhhhhhHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHhhheccC---CC--CCHHH---HHHHHHHHH--HH-
Confidence 34456888999999999885 48899999999999999999999988762 11 22222 222221111 11
Q ss_pred HHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHhcCCCC-----------ChhhHHHhh
Q 036516 178 LVRPLTMRIVSKNSEEESMNQNHFIITICIVLVTTILGTLVGQNSILTAFFFGLCLPDGP-----------PLGTQLVQK 246 (709)
Q Consensus 178 v~r~~~~~i~~~~~~~~~~~e~~~~~vl~~~l~~~~~~~~~G~~~~lGaf~~Gl~ip~~~-----------~~~~~l~~k 246 (709)
|+.+|. ++++.+.++++. +++.+..+..|+|+.+|+|++|+++|..+ +..++++++
T Consensus 198 -------~~l~~~----~V~~~~~Y~ilg--~~lW~~~~~sGiHatiAGvllGl~IP~~~~~~~~~~~~~~~p~~rle~~ 264 (423)
T PRK14853 198 -------WLLVQK----RVRKWWLLLPLG--VATWILVHESGVHATVAGVLLGFAVPVLRREGEEGPEAGPGLAEHLEHR 264 (423)
T ss_pred -------HHHHHc----CCchhhHHHHHH--HHHHHHHHHhCCCHHHHHHHHHHhcccccccccccccccCCHHHHHHHH
Confidence 222232 234455665553 36667889999999999999999999521 335789999
Q ss_pred hhhhhHhhhhHHH-HHHhhhcccc-ccccch-hhHHHHHHHHHHHHHHHHHHHHhHhhh----------CCCHHHHHHHH
Q 036516 247 LDFFTSGFLLPVF-CAISGIRMEL-YLINEK-SFIKIEFIILMSYLGKFTGVMVPSLFF----------GMSFLKASCLA 313 (709)
Q Consensus 247 l~~~~~~~flPlF-F~~~G~~~d~-~~l~~~-~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~~~~~~lg 313 (709)
+++++..+++|+| |+..|.++|. ..+.+. .-.....+++..++||.+|.+..++.. +++|++-+.+|
T Consensus 265 L~p~V~~~ILPLFAFANaGV~l~~~~~~~~~~~~pv~lgI~lgL~vGK~lGI~~~~~l~~k~~~~~lP~~~~~~~l~gv~ 344 (423)
T PRK14853 265 LRPLSAGVAVPVFAFFSAGVAIGGLSGLGAALTDPIVLGVVLGLVVGKPIGIFGTTYLLTKFTRASLDDDLTWIDVFGVA 344 (423)
T ss_pred HHHHHHHHHHHHHHHHHhhheecCchhHHHHhhchHHHHHHHHHHHHhHHHHHHHHHHHHHhCcCCCCCCCCHHHHHHHH
Confidence 9999999999999 9999999986 434111 111455677778899999987776543 47899999999
Q ss_pred HHhhhhhhHHHHHHHhhhc-cCccchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 036516 314 LIMCCRGIAEIAVYCMWKD-RKIITNQIFAIMITNMVIITGISTTIVGYLY 363 (709)
Q Consensus 314 ~~m~~kG~~~l~~~~~~~~-~~~i~~~~~~~lv~~~ll~t~i~~plv~~ly 363 (709)
++-+.--.+++.+.+.+++ ..-..++.--.+.+.++++..+...+++...
T Consensus 345 ~L~GIGFTmSlFI~~LAf~~~~~~~~~aKigil~~S~~s~~~G~~~l~~~~ 395 (423)
T PRK14853 345 LLAGIGFTVSLLIGELAFGGGSARDDAVKVGVLTGSLIAALLASVLLRLRN 395 (423)
T ss_pred HHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9877778899999999994 2212223333344444553444444444433
No 16
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=99.76 E-value=5.1e-17 Score=169.17 Aligned_cols=330 Identities=12% Similarity=0.087 Sum_probs=264.1
Q ss_pred cEEEcccccccccccCccCCCCcHHHHHHHHHHHHHHHHHHHhhhcChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 036516 2 GALMGPSLLREIPYLDGLFPMGSRYVLRTFAEFGMILHAFVLGVQIDLGLVKHIRKRAVIIGITSTLLPLVFGLSSFRIV 81 (709)
Q Consensus 2 GiilGPs~Lg~~~~~~~~fp~~~~~~l~~la~iGli~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~ip~~~g~~~~~~l 81 (709)
|++.|--++|.++| ++...-..++++++++++|-.|+.++++.+|...++++.++..|++++-.+...+++++
T Consensus 41 Gm~aG~dGlg~I~f-------dNy~~Ay~vg~lALaiILfdgG~~T~lss~r~a~~palsLATlGVl~Ts~Ltg~aA~~l 113 (574)
T COG3263 41 GMLAGVDGLGGIEF-------DNYPFAYMVGNLALAIILFDGGFGTQLSSFRVAAGPALSLATLGVLITSGLTGVAAAYL 113 (574)
T ss_pred HHHcCCCccccccc-------CccHHHHHHHHHHHHHHhhcCccCCcHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 66778888887733 44567778999999999999999999999999999999999999999988776666666
Q ss_pred hhhccCCchhhHHHHHHHHHHhhchHHHHHHHHHHhccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCccchh
Q 036516 82 QRISHLDDETASSIAASVVVNSMTSLVVITGLLKELKMLNSELGRLAASITIVSHIFGWSASMILLSVRDSQ-DNLTTIK 160 (709)
Q Consensus 82 ~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~el~ll~s~~G~lals~a~v~D~~~~~ll~i~~~~~~~~-~~~~~~~ 160 (709)
.+.. |.+.+++|+++..|.-+.+..+|.+.+ +|.+++.+.--.+--||-.++++...++-+...+ ++..+..
T Consensus 114 l~l~------wle~~LiGAiVgSTDAAAVF~lL~~~n-l~erv~stLEiESGtNDPmAvfLTitlieli~~get~l~~~~ 186 (574)
T COG3263 114 LNLD------WLEGLLIGAIVGSTDAAAVFSLLGGKN-LNERVASTLEIESGSNDPMAVFLTITLIELIAGGETNLSWGF 186 (574)
T ss_pred hccH------HHHHHHHHHhhccccHHHHHHHHccCC-hhhhhhhhEEeecCCCCceeeehhHHHHHHHhccccccCHHH
Confidence 5543 799999999999999999999998887 5788888888888899999988876555554443 2222211
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHhcCCCCCh-
Q 036516 161 PLYITLVVIVYYIIVIFLVRPLTMRIVSKNSEEESMNQNHFIITICIVLVTTILGTLVGQNSILTAFFFGLCLPDGPPL- 239 (709)
Q Consensus 161 ~~~~~~~~i~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~~~vl~~~l~~~~~~~~~G~~~~lGaf~~Gl~ip~~~~~- 239 (709)
+..++...++.++..+....+..|+++|..-+ +..|..+++...++...+++.+|-++++..+++|+.+.+.+-.
T Consensus 187 -ll~f~~q~glG~l~G~~gg~l~~~~Inr~nLd---~GL~pil~la~~Ll~fs~t~aiGGsG~LaVYl~Gll~GN~~i~~ 262 (574)
T COG3263 187 -LLGFLQQFGLGLLLGLGGGKLLLQLINRINLD---SGLYPILALAGGLLIFSLTGAIGGSGILAVYLAGLLLGNRPIRA 262 (574)
T ss_pred -HHHHHHHhhHHHHHHHHHHHHHHHHHHhhccc---cchhHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHhCCCcchh
Confidence 11456677788888888889999999987322 4578889999999999999999999999999999999997533
Q ss_pred hhHHHhhhhhhhHhhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHhHhhhCCCHHHHHHHHHHhhhh
Q 036516 240 GTQLVQKLDFFTSGFLLPVFCAISGIRMELYLINEKSFIKIEFIILMSYLGKFTGVMVPSLFFGMSFLKASCLALIMCCR 319 (709)
Q Consensus 240 ~~~l~~kl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~k 319 (709)
++.+.+..|.+ +++..-+.|...|+...++.+....+..+++.+...++.|.+++++...-++.++||.++++| -.-|
T Consensus 263 r~~I~~f~dG~-twlaQI~MFlvLGLLvtPsql~~iavPailL~l~mifvaRP~aV~l~l~Pfrf~~~Ek~fvSW-vGLR 340 (574)
T COG3263 263 RHGILRFFDGL-AWLAQILMFLVLGLLVTPSQLLPIAIPAILLSLWMIFVARPLAVFLGLIPFRFNRREKLFVSW-VGLR 340 (574)
T ss_pred HHHHHHHhccH-HHHHHHHHHHHHHHhcCHhhhhHhhHHHHHHHHHHHHHHhHHHHHHhhcccccCccchheeeh-hhcc
Confidence 34566666666 788888899999999999887665566566777778899999999998889999999999999 6899
Q ss_pred hhHHHHHHHhhhccCccchh-HHHHHHHHHHHH
Q 036516 320 GIAEIAVYCMWKDRKIITNQ-IFAIMITNMVII 351 (709)
Q Consensus 320 G~~~l~~~~~~~~~~~i~~~-~~~~lv~~~ll~ 351 (709)
|.+.++++....-.|.-+.+ .|++..+.++++
T Consensus 341 GAv~IilAifpm~aglena~l~FNvAF~VVLvS 373 (574)
T COG3263 341 GAVPIILAIFPMMAGLENARLFFNVAFFVVLVS 373 (574)
T ss_pred cchhhhHhhhHHhcCCccceEEeehhHHHHHHH
Confidence 99999999888777765544 344444444443
No 17
>PRK11175 universal stress protein UspE; Provisional
Probab=99.75 E-value=5.4e-17 Score=172.69 Aligned_cols=275 Identities=11% Similarity=0.100 Sum_probs=166.7
Q ss_pred eeEEEeccCCChHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCccccccCccccccchhchhHHHHHHHHHHHh-cCcc
Q 036516 386 RILVCIHKEQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLKPHHQQTKSEAASSTQLINAFTQFQRC-YYGH 464 (709)
Q Consensus 386 riLv~v~~~~~~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~-~~~~ 464 (709)
|||+|++.+++...+++.+..++ +....+++++|+++......+................++..+.++++.+. ...+
T Consensus 5 ~ILv~~D~s~~~~~al~~a~~lA--~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 82 (305)
T PRK11175 5 NILVVIDPNQDDQPALRRAVYLA--QRNGGKITAFLPIYDFSYEMTTLLSPDEREAMRQGVISQRTAWIREQAKPYLDAG 82 (305)
T ss_pred eEEEEcCCCccccHHHHHHHHHH--HhcCCCEEEEEeccCchhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 79999999999999999998888 44456899999885432211111100000000000111111222222211 1245
Q ss_pred eEEEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEEEecCCCCCCC
Q 036516 465 VVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGILVHRGQNKSNR 544 (709)
Q Consensus 465 v~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIlvdrg~~~~~~ 544 (709)
++++..+... .+.+++|++.|+++++||||||+|++.+..+. .+|++.+++++++||||.++.++....
T Consensus 83 ~~~~~~v~~~--g~~~~~i~~~a~~~~~DLiV~G~~~~~~~~~~------~~gs~~~~l~~~~~~pvlvv~~~~~~~--- 151 (305)
T PRK11175 83 IPIEIKVVWH--NRPFEAIIQEVIAGGHDLVVKMTHQHDKLESV------IFTPTDWHLLRKCPCPVLMVKDQDWPE--- 151 (305)
T ss_pred CceEEEEecC--CCcHHHHHHHHHhcCCCEEEEeCCCCcHHHhh------ccChhHHHHHhcCCCCEEEecccccCC---
Confidence 7777655532 48899999999999999999999987654433 589999999999999998876532111
Q ss_pred cccCCCcceEEEEeeccCcCh-------HHHHHHHHHHhcCC-CeEEEEEEeeecCCC--C---CC-CCCCCchhHH---
Q 036516 545 PVYTGELLYHIVMLFIGGADD-------REALAYSRRMAEHP-NTSLTVVWFITTDQN--R---PS-TEMPDDHELD--- 607 (709)
Q Consensus 545 ~~~~~~~~~~V~~~f~Gg~dd-------reAl~~a~rma~~~-~~~ltvl~v~~~~~~--~---~~-~~~~~~~~~d--- 607 (709)
..+|+++.-|++++ ..|+++|.++|+.. +++++++|+.++... . +. ..++.++...
T Consensus 152 -------~~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (305)
T PRK11175 152 -------GGKILVAVNVASEEPYHDALNEKLVEEAIDLAEQLNHAEVHLVNAYPVTPINIAIELPEFDPSVYNDAIRGQH 224 (305)
T ss_pred -------CCeEEEEeCCCCCccchhHHHHHHHHHHHHHHhhCcCCceEEEEEecCcchhccccccccchhhHHHHHHHHH
Confidence 23688777766542 67999999999998 999999999752110 0 00 0011111111
Q ss_pred HHHHHHHhhhcCCCcEEEEEEeecCh---hhHHHHHHhhhcCCcEEEEecCCCCCcccccccCcCCCCCccchhhhhhhc
Q 036516 608 NQAFDEFKDSMVGNKIIFREEIVKDG---IGTTQVIQAFAETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVN 684 (709)
Q Consensus 608 ~~~l~~~~~~~~~~~v~y~e~~v~~g---~~~~~~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las 684 (709)
++.++++..+..-. ..+..+..| +++.+.+++ .++||+++|.++.. |+.+| =+|-..+-++.
T Consensus 225 ~~~l~~~~~~~~~~---~~~~~v~~G~~~~~I~~~a~~--~~~DLIVmG~~~~~------~~~~~----llGS~a~~v~~ 289 (305)
T PRK11175 225 LLAMKALRQKFGID---EEQTHVEEGLPEEVIPDLAEH--LDAELVILGTVGRT------GLSAA----FLGNTAEHVID 289 (305)
T ss_pred HHHHHHHHHHhCCC---hhheeeccCCHHHHHHHHHHH--hCCCEEEECCCccC------CCcce----eecchHHHHHh
Confidence 12344444332211 111222233 224444444 38999999998752 12222 47888888886
Q ss_pred CCCCcceEEEee
Q 036516 685 SNDEFSVLVVQQ 696 (709)
Q Consensus 685 ~d~~~SvLvvqq 696 (709)
. .+|+||||..
T Consensus 290 ~-~~~pVLvv~~ 300 (305)
T PRK11175 290 H-LNCDLLAIKP 300 (305)
T ss_pred c-CCCCEEEEcC
Confidence 4 6679999963
No 18
>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=99.61 E-value=1.5e-13 Score=138.68 Aligned_cols=319 Identities=10% Similarity=0.125 Sum_probs=216.0
Q ss_pred CcEEEcccccccccccCccCCCCcHHHHHHHHHHHHHHHHHHHhhhcChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 036516 1 GGALMGPSLLREIPYLDGLFPMGSRYVLRTFAEFGMILHAFVLGVQIDLGLVKHIRKRAVIIGITSTLLPLVFGLSSFRI 80 (709)
Q Consensus 1 aGiilGPs~Lg~~~~~~~~fp~~~~~~l~~la~iGli~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~ip~~~g~~~~~~ 80 (709)
.|+++||.+++..+-..+ .+.+.....++.+=+..-.|.+++|+.-..+.++++..+..-+--.+.-+.+.+.+.|.
T Consensus 47 tGlI~Gphvlnlfdp~~w---gn~d~it~ei~RvvLcvqvfava~eLPr~Y~l~~w~Si~vlllpVmi~gwlvs~~fvy~ 123 (467)
T KOG4505|consen 47 TGLIFGPHVLNLFDPNSW---GNKDYITYEISRVVLCVQVFAVAMELPRAYMLEHWRSIFVLLLPVMIIGWLVSFGFVYA 123 (467)
T ss_pred hheeechhhhhhcCCccc---cCcchhhhhhhhhhHhHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999887611111 12345667789999999999999999999999999887654333333333344444455
Q ss_pred HhhhccCCchhhHHHHHHHHHHhhchHHHHHHHHHHhcccc---ChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC--
Q 036516 81 VQRISHLDDETASSIAASVVVNSMTSLVVITGLLKELKMLN---SELGRLAASITIVSHIFGWSASMILLSVRDSQDN-- 155 (709)
Q Consensus 81 l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~el~ll~---s~~G~lals~a~v~D~~~~~ll~i~~~~~~~~~~-- 155 (709)
+.+... ...++.++.+++.|.+.....+..+-+..+ .++..+..+.+-.||..++.++-+.+-+...+..
T Consensus 124 l~p~ln-----f~~Sl~iaaCiTaTDPiLsssIV~~g~~akrvPeriR~lL~AESGcNDGMaipflflai~Ll~h~~~r~ 198 (467)
T KOG4505|consen 124 LIPNLN-----FLTSLLIAACITATDPILSSSIVGGGKFAKRVPERIRNLLAAESGCNDGMAIPFLFLAIDLLRHKPRRK 198 (467)
T ss_pred Hhcccc-----HHHHHHHHHHccCCchhHHHHHhcCchHhhhChHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCchhc
Confidence 543221 467889999999999555555666555544 3556678888999999999888776665433211
Q ss_pred --ccchh--hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHH
Q 036516 156 --LTTIK--PLYITLVVIVYYIIVIFLVRPLTMRIVSKNSEEESMNQNHFIITICIVLVTTILGTLVGQNSILTAFFFGL 231 (709)
Q Consensus 156 --~~~~~--~~~~~~~~i~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~~~vl~~~l~~~~~~~~~G~~~~lGaf~~Gl 231 (709)
..++. .+|-....+.+..+++++.|..++.--|+.--+ .|+++.+-+++.+.|+.+.+.+|.+-.+-.|.||.
T Consensus 199 ~~rdwv~~~iLyec~fg~llG~vIG~l~r~~lk~aekkrlid---~eSfl~~~vvl~lfc~gigtiiGvddLl~sFfAGi 275 (467)
T KOG4505|consen 199 AGRDWVCDNILYECFFGCLLGCVIGYLSRQGLKFAEKKRLID---RESFLIFYVVLALFCMGIGTIIGVDDLLVSFFAGI 275 (467)
T ss_pred cCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---HHHHHHHHHHHHHHHhhhhheechhHHHHHHHhhh
Confidence 22322 122333334455556666666666555443222 47888899999999999999999999999999999
Q ss_pred hcCCCCChhhHH-HhhhhhhhHhhhhHHHHHHhhhccccccccch----hhHHHHHHHHH-HHHHHHHHHHHhHhhh--C
Q 036516 232 CLPDGPPLGTQL-VQKLDFFTSGFLLPVFCAISGIRMELYLINEK----SFIKIEFIILM-SYLGKFTGVMVPSLFF--G 303 (709)
Q Consensus 232 ~ip~~~~~~~~l-~~kl~~~~~~~flPlFF~~~G~~~d~~~l~~~----~~~~~~~ii~~-~~~~K~~~~~l~~~~~--~ 303 (709)
+++.+.-+..+. ..++..+...++--.||.+.|..++++.++.. ..|..+++.+. .+.-|+.++++.--+. =
T Consensus 276 ~Fswd~wFsk~t~~s~v~~viD~lls~sfF~yfGaiipwsqFn~s~~gl~vwrlvilsi~iif~RRip~v~l~kp~iPdi 355 (467)
T KOG4505|consen 276 VFSWDEWFSKKTKESRVSEVIDLLLSLSFFLYFGAIIPWSQFNLSVEGLPVWRLVILSITIIFIRRIPAVYLMKPLIPDI 355 (467)
T ss_pred hcchhHHhhhhhhhccHHHHHHHHHHHHHHHHhccccchhhcCCcccCchHHHHHHHHHHHHHhcccceEEEeccCCcch
Confidence 999876555433 33566666677777899999999999877643 23333333333 3334555554432221 1
Q ss_pred CCHHHHHHHHHHhhhhhhHHHHHHHhhh
Q 036516 304 MSFLKASCLALIMCCRGIAEIAVYCMWK 331 (709)
Q Consensus 304 ~~~~~~~~lg~~m~~kG~~~l~~~~~~~ 331 (709)
.+|||++++|. .+|.|.-++..+..+.
T Consensus 356 kswkEALFvGh-FGPIGVgAly~allar 382 (467)
T KOG4505|consen 356 KSWKEALFVGH-FGPIGVGALYYALLAR 382 (467)
T ss_pred hhHHHHHHhcc-CCCccHHHHHHHHHHH
Confidence 57999999999 8999998888777664
No 19
>TIGR00773 NhaA Na+/H+ antiporter NhaA. These proteins are members of the NhaA Na+:H+ Antiporter (NhaA) Family (TC. 2.A.33). The Escherichia coli NhaA protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. Only the E. coli protein is functionally and structurally well characterized.
Probab=99.60 E-value=1.3e-13 Score=145.48 Aligned_cols=272 Identities=13% Similarity=0.179 Sum_probs=173.9
Q ss_pred HHHHHHHHHHHH-HHHHHHhhhcChHHHH---hhhhhH---HHHHHHHHHHHHHHHHHHHHHHhhhccCCchhhHHHHHH
Q 036516 26 YVLRTFAEFGMI-LHAFVLGVQIDLGLVK---HIRKRA---VIIGITSTLLPLVFGLSSFRIVQRISHLDDETASSIAAS 98 (709)
Q Consensus 26 ~~l~~la~iGli-~~lF~~Gle~d~~~l~---~~~~~~---~~i~~~~~~ip~~~g~~~~~~l~~~~~~~~~~~~~~l~l 98 (709)
..+..+-+=|++ +|.|.+|+|++.+.+. |+.||+ ..-++.|+++|.++= ..+.. ..+. ..--+
T Consensus 50 ~~l~~wiNDgLMaiFFf~vGlEiKrE~~~GeL~~~~~a~lP~~aA~GGm~vPa~iy----~~~n~-~~~~-----~~~GW 119 (373)
T TIGR00773 50 KSLLHWINDGLMAVFFLLIGLEVKRELLEGALSSLRQAIFPVIAAIGGMIAPALIY----LAFNA-NDPI-----TREGW 119 (373)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHH----hheec-CCCc-----ccCcc
Confidence 456666677766 8889999999998874 444544 456677888887642 22221 1110 01111
Q ss_pred HHHHh-hchHHHHHHHHHHhccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccchhhHHHHHHHHHHHHHHHH
Q 036516 99 VVVNS-MTSLVVITGLLKELKMLNSELGRLAASITIVSHIFGWSASMILLSVRDSQDNLTTIKPLYITLVVIVYYIIVIF 177 (709)
Q Consensus 99 ~~~ls-~Ts~~vv~~iL~el~ll~s~~G~lals~a~v~D~~~~~ll~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 177 (709)
++-++ -++|.+-+..+--.+ ....+-...++-|++||+.++++++++.+ ++ ....+ .......+.+
T Consensus 120 ~IP~ATDiAFalgvlallG~~-vP~~lr~FLl~LAIvDDlgaI~vIA~FYt---~~--i~~~~---L~~a~~~~~~---- 186 (373)
T TIGR00773 120 AIPAATDIAFALGVMALLGKR-VPLALKIFLLALAIIDDLGAIVIIALFYT---ND--LSMAA---LLVAAVAIAV---- 186 (373)
T ss_pred ccccHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHhhHhheeeecC---CC--CCHHH---HHHHHHHHHH----
Confidence 22221 133333332222222 34556788899999999999998887753 11 22333 3222222211
Q ss_pred HHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHhcCCCCCh----hhHHHhhhhhhhHh
Q 036516 178 LVRPLTMRIVSKNSEEESMNQNHFIITICIVLVTTILGTLVGQNSILTAFFFGLCLPDGPPL----GTQLVQKLDFFTSG 253 (709)
Q Consensus 178 v~r~~~~~i~~~~~~~~~~~e~~~~~vl~~~l~~~~~~~~~G~~~~lGaf~~Gl~ip~~~~~----~~~l~~kl~~~~~~ 253 (709)
.++.+|.. +++...+.++..++. .++ ...|+|+.+|+|++|+++|+..+. .+++++.+++++..
T Consensus 187 ------l~~~~~~~----v~~~~~y~~lgvllW-~~~-~~sGVHatiaGvllGl~iP~~~~~~~~pl~rleh~L~p~v~~ 254 (373)
T TIGR00773 187 ------LAVLNRCG----VRRLGPYMLVGVILW-FAV-LKSGVHATLAGVIIGFFIPLKGKKGESPLKRLEHVLHPWVAY 254 (373)
T ss_pred ------HHHHHHcC----CchhhHHHHHHHHHH-HHH-HHcCCcHHHHHHHHeeeecccccCCCCHHHHHHHHHHHHHHH
Confidence 12223321 234444444443333 333 799999999999999999986433 35666777777999
Q ss_pred hhhHHH-HHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHhHhhh----------CCCHHHHHHHHHHhhhhhhH
Q 036516 254 FLLPVF-CAISGIRMELYLINEKSFIKIEFIILMSYLGKFTGVMVPSLFF----------GMSFLKASCLALIMCCRGIA 322 (709)
Q Consensus 254 ~flPlF-F~~~G~~~d~~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~~~~~~lg~~m~~kG~~ 322 (709)
+++|+| |+..|.++|...+..........+++..++||.+|++..++.. +++|++-..+|++-..--.+
T Consensus 255 lilPlFAFanAGv~l~~~~~~~~~~~v~lgI~lgLvvGK~lGI~~~~~l~~kl~~~~lP~~~~w~~~~gv~~L~GIGFTm 334 (373)
T TIGR00773 255 LILPLFAFANAGVSLQGVSLNGLTSMLPLGIILGLLIGKPLGIFLFSWIAVKLKLAKLPEGINFKQIFAVGVLCGIGFTM 334 (373)
T ss_pred HHHHHHHHHhcCeeeecCcchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999 9999999987555332233466777888999999998887653 47899999999987777789
Q ss_pred HHHHHHhhhc
Q 036516 323 EIAVYCMWKD 332 (709)
Q Consensus 323 ~l~~~~~~~~ 332 (709)
++.+.+.+++
T Consensus 335 SlfI~~LAf~ 344 (373)
T TIGR00773 335 SIFIASLAFG 344 (373)
T ss_pred HHHHHHHhcC
Confidence 9999999884
No 20
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=99.53 E-value=9.1e-14 Score=128.32 Aligned_cols=131 Identities=17% Similarity=0.261 Sum_probs=101.5
Q ss_pred eeEEEeccCCChHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCccccccCccccccchhchhHHHHHHHHHHHhcCcce
Q 036516 386 RILVCIHKEQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLKPHHQQTKSEAASSTQLINAFTQFQRCYYGHV 465 (709)
Q Consensus 386 riLv~v~~~~~~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~~v 465 (709)
|||||++++++...+++.+..+++. .+.+++++|+++.+....+ +.. .......++.++.+.+..+. .++
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~--~~~~v~ll~v~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~~~~--~g~ 70 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARA--QNGEIIPLNVIEVPNHSSP----SQL--EVNVQRARKLLRQAERIAAS--LGV 70 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhc--CCCeEEEEEEEecCCCCCc----chh--HHHHHHHHHHHHHHHHHhhh--cCC
Confidence 6999999999999999999999954 5679999999998754322 110 11233455666666665432 457
Q ss_pred EEEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEE
Q 036516 466 VVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGIL 534 (709)
Q Consensus 466 ~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIl 534 (709)
++++.+..+ .++.++||+.|+++++|+||||+|++++..+. .+|+++++|++++||||+|+
T Consensus 71 ~~~~~~~~~--~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~------~lGs~~~~v~~~~~~pvlvv 131 (132)
T cd01988 71 PVHTIIRID--HDIASGILRTAKERQADLIIMGWHGSTSLRDR------LFGGVIDQVLESAPCDVAVV 131 (132)
T ss_pred ceEEEEEec--CCHHHHHHHHHHhcCCCEEEEecCCCCCccce------ecCchHHHHHhcCCCCEEEe
Confidence 788777665 47999999999999999999999998765333 58999999999999999885
No 21
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.32 E-value=2.6e-10 Score=122.56 Aligned_cols=298 Identities=13% Similarity=0.148 Sum_probs=179.4
Q ss_pred HHHHHHHHHHHH-HHHHHHhhhcChHHHH---hhhhhH---HHHHHHHHHHHHHHHHHHHHHHhhhccCCchhhHHHHHH
Q 036516 26 YVLRTFAEFGMI-LHAFVLGVQIDLGLVK---HIRKRA---VIIGITSTLLPLVFGLSSFRIVQRISHLDDETASSIAAS 98 (709)
Q Consensus 26 ~~l~~la~iGli-~~lF~~Gle~d~~~l~---~~~~~~---~~i~~~~~~ip~~~g~~~~~~l~~~~~~~~~~~~~~l~l 98 (709)
..+..+-+=|++ +|.|.+|+|+.-+.+. ++.||+ ..-++.|+++|.++ ++.+.. ..+. .--+
T Consensus 66 ~sl~~wINDgLMaiFFf~VGLEIKrE~~~GeLs~~rka~lPi~AAlGGmivPAlI----Y~~~n~-~~~~------~~GW 134 (438)
T PRK14856 66 FSLHNWIDDVLMALFFLMIGLEIKRELLFGELSSFKKASFPVIAALGGMIAPGLI----YFFLNA-DTPS------QHGF 134 (438)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHhccHHHHHH----Hhheec-CCCc------cCcc
Confidence 355566666665 8889999999988874 344444 45667788888764 222221 1111 1122
Q ss_pred HHHHhh-chHHHHHHHHHHhcc-ccChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccchhhHHHHHHHHHHHHHHH
Q 036516 99 VVVNSM-TSLVVITGLLKELKM-LNSELGRLAASITIVSHIFGWSASMILLSVRDSQDNLTTIKPLYITLVVIVYYIIVI 176 (709)
Q Consensus 99 ~~~ls~-Ts~~vv~~iL~el~l-l~s~~G~lals~a~v~D~~~~~ll~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 176 (709)
|+-+++ ++|.+- +|.=+|- ..+.+-...++-|++||+.++++++++.+ .+ ....+ ...+..++.++
T Consensus 135 gIPmATDIAFAlg--vLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt---~~--i~~~~---L~~a~~~~~~l-- 202 (438)
T PRK14856 135 GIPMATDIAFALG--VIMLLGKRVPTALKVFLITLAVADDLGAIVVIALFYT---TN--LKFAW---LLGALGVVLVL-- 202 (438)
T ss_pred ccccHHHHHHHHH--HHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeecC---CC--CcHHH---HHHHHHHHHHH--
Confidence 222221 333322 2222221 34466688999999999999999887753 11 22334 33333222211
Q ss_pred HHHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHhcCCCCCh-----------------
Q 036516 177 FLVRPLTMRIVSKNSEEESMNQNHFIITICIVLVTTILGTLVGQNSILTAFFFGLCLPDGPPL----------------- 239 (709)
Q Consensus 177 ~v~r~~~~~i~~~~~~~~~~~e~~~~~vl~~~l~~~~~~~~~G~~~~lGaf~~Gl~ip~~~~~----------------- 239 (709)
++.+|.. ++....++++.+++..+. ...|+|+.++..++|+++|..++.
T Consensus 203 --------~~ln~~~----v~~~~~Y~~~G~~lW~~~--l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~ 268 (438)
T PRK14856 203 --------AVLNRLN----VRSLIPYLLLGVLLWFCV--HQSGIHATIAAVVLAFMIPVKIPKDSKNVELLELGKRYAET 268 (438)
T ss_pred --------HHHHHcC----CccccHHHHHHHHHHHHH--HHccCcHHHHHHHHHheeecccccccchhhhhhhhhhhhcc
Confidence 1122221 233444555554443332 578999999999999999964322
Q ss_pred ---------------------------hhHHHhhhhhhhHhhhhHHH-HHHhhhccccccccchhhHHHHHHHHHHHHHH
Q 036516 240 ---------------------------GTQLVQKLDFFTSGFLLPVF-CAISGIRMELYLINEKSFIKIEFIILMSYLGK 291 (709)
Q Consensus 240 ---------------------------~~~l~~kl~~~~~~~flPlF-F~~~G~~~d~~~l~~~~~~~~~~ii~~~~~~K 291 (709)
.+++++.+++++..+.+|+| |+..|..++...... .-.....+++..++||
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~pl~rleh~L~p~v~f~IlPlFAfaNAGV~l~~~~~~~-~~pv~lGI~~GLvvGK 347 (438)
T PRK14856 269 SSGALLTKEQQEILHSIEEKASALQSPLERLEHFLAPISGYFIMPLFAFANAGVSVDSSINLE-VDKVLLGVILGLCLGK 347 (438)
T ss_pred ccccccccchhhhhhhhhhcccccCCHHHHHHHhhhhhhHHhhHHHHHhhcCCceeccchhhc-cCcHHHHHHHHHHhcc
Confidence 24577788888999999999 789999887542211 1123345666677899
Q ss_pred HHHHHHhHhhh----------CCCHHHHHHHHHHhhhhhhHHHHHHHhhhcc--CccchhHHHHHHHHHHHHHHHHHHHH
Q 036516 292 FTGVMVPSLFF----------GMSFLKASCLALIMCCRGIAEIAVYCMWKDR--KIITNQIFAIMITNMVIITGISTTIV 359 (709)
Q Consensus 292 ~~~~~l~~~~~----------~~~~~~~~~lg~~m~~kG~~~l~~~~~~~~~--~~i~~~~~~~lv~~~ll~t~i~~plv 359 (709)
.+|.+..++.. +++|++-+..|++-+.--.+++.+.+.+++. .-..++.--.+.+.++++..+..-++
T Consensus 348 ~lGI~~~s~lavkl~~a~lP~g~~w~~l~gv~~LaGIGFTmSLFIa~LAF~~~~~~~~~~aKigIL~gS~lsai~G~~~L 427 (438)
T PRK14856 348 PLGIFLITFISEKLKITARPKGISWWHILGAGLLAGIGFTMSMFISNLAFTSEHKDAMEVAKIAILLGSLISGIIGALYL 427 (438)
T ss_pred hHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988876553 4789999999997777778999999999843 22223333334444445343333344
Q ss_pred Hh
Q 036516 360 GY 361 (709)
Q Consensus 360 ~~ 361 (709)
++
T Consensus 428 ~~ 429 (438)
T PRK14856 428 FA 429 (438)
T ss_pred HH
Confidence 43
No 22
>PRK15005 universal stress protein F; Provisional
Probab=99.32 E-value=1.8e-11 Score=115.11 Aligned_cols=137 Identities=15% Similarity=0.130 Sum_probs=89.1
Q ss_pred eeEEEeccCCC--hHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCccccccCccccccchhchhHHHHHHHHHHHhc-C
Q 036516 386 RILVCIHKEQN--VNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLKPHHQQTKSEAASSTQLINAFTQFQRCY-Y 462 (709)
Q Consensus 386 riLv~v~~~~~--~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~-~ 462 (709)
|||+|++.+++ ...+++.+..++. ..+.+++++|+++................+......++..+.++++.+.. .
T Consensus 4 ~ILv~~D~s~~~~~~~a~~~a~~la~--~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 81 (144)
T PRK15005 4 TILVPIDISDSELTQRVISHVEAEAK--IDDAEVHFLTVIPSLPYYASLGLAYSAELPAMDDLKAEAKSQLEEIIKKFKL 81 (144)
T ss_pred cEEEecCCCchhHHHHHHHHHHHHHh--ccCCeEEEEEEEccCcccccccccccccchHHHHHHHHHHHHHHHHHHHhCC
Confidence 69999999998 4678888877773 34578999999985422111100000000001111222333444443322 2
Q ss_pred cceEEEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEE
Q 036516 463 GHVVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGIL 534 (709)
Q Consensus 463 ~~v~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIl 534 (709)
.+++++..+..+ +..+.|++.|+++++||||||.|+ .+..+. .+||+.++|++++||||.|+
T Consensus 82 ~~~~~~~~v~~G---~p~~~I~~~a~~~~~DLIV~Gs~~-~~~~~~------llGS~a~~vl~~a~cpVlvV 143 (144)
T PRK15005 82 PTDRVHVHVEEG---SPKDRILELAKKIPADMIIIASHR-PDITTY------LLGSNAAAVVRHAECSVLVV 143 (144)
T ss_pred CCCceEEEEeCC---CHHHHHHHHHHHcCCCEEEEeCCC-CCchhe------eecchHHHHHHhCCCCEEEe
Confidence 345566665555 889999999999999999999984 333332 58999999999999999875
No 23
>PRK15456 universal stress protein UspG; Provisional
Probab=99.31 E-value=1.9e-11 Score=114.77 Aligned_cols=136 Identities=9% Similarity=0.099 Sum_probs=91.2
Q ss_pred ceeEEEeccCC--ChHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCccccccCccccccchhchhHHHHHHHHHHHhc-
Q 036516 385 LRILVCIHKEQ--NVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLKPHHQQTKSEAASSTQLINAFTQFQRCY- 461 (709)
Q Consensus 385 ~riLv~v~~~~--~~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~- 461 (709)
-|||+|+++++ +...+++.+..++.. . .+++++|+++..... ..........+......++..+.++++.+..
T Consensus 3 ~~ILv~vD~S~~~~s~~al~~A~~la~~--~-~~l~llhv~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 78 (142)
T PRK15456 3 KTIIMPVDVFEMELSDKAVRHAEFLAQD--D-GVIHLLHVLPGSASL-SLHRFAADVRRFEEHLQHEAEERLQTMVSHFT 78 (142)
T ss_pred ccEEEeccCCchhHHHHHHHHHHHHHhc--C-CeEEEEEEecCcccc-cccccccchhhHHHHHHHHHHHHHHHHHHHhC
Confidence 37999999984 889999999888743 3 489999998754211 1100000000001111122333344443221
Q ss_pred CcceEEEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEE
Q 036516 462 YGHVVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGIL 534 (709)
Q Consensus 462 ~~~v~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIl 534 (709)
..++.+++.+..+ +..++|++.|+++++||||||.|++. ..+. .+||+.++|++++||||.|+
T Consensus 79 ~~~~~v~~~v~~G---~~~~~I~~~a~~~~~DLIVmG~~g~~-~~~~------llGS~a~~v~~~a~~pVLvV 141 (142)
T PRK15456 79 IDPSRIKQHVRFG---SVRDEVNELAEELGADVVVIGSRNPS-ISTH------LLGSNASSVIRHANLPVLVV 141 (142)
T ss_pred CCCcceEEEEcCC---ChHHHHHHHHhhcCCCEEEEcCCCCC-ccce------ecCccHHHHHHcCCCCEEEe
Confidence 2456777777666 89999999999999999999999864 4332 58999999999999999875
No 24
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=99.30 E-value=5.1e-10 Score=118.58 Aligned_cols=272 Identities=14% Similarity=0.191 Sum_probs=168.4
Q ss_pred HHHHHHHHHHHH-HHHHHHhhhcChHHHH---hhhhhH---HHHHHHHHHHHHHHHHHHHHHHhhhccCCchhhHHHHHH
Q 036516 26 YVLRTFAEFGMI-LHAFVLGVQIDLGLVK---HIRKRA---VIIGITSTLLPLVFGLSSFRIVQRISHLDDETASSIAAS 98 (709)
Q Consensus 26 ~~l~~la~iGli-~~lF~~Gle~d~~~l~---~~~~~~---~~i~~~~~~ip~~~g~~~~~~l~~~~~~~~~~~~~~l~l 98 (709)
..+..+.+=|++ +|.|.+|+|++-+.+. ++.||+ +.-++.|+++|.++= +.+....+ . ..--+
T Consensus 57 ~sl~~wiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lPi~AAlGGmivPAlIy----~~~n~g~~-~-----~~~GW 126 (389)
T PRK09560 57 KSLLHWINDGLMAVFFLLVGLEIKRELLEGQLSSWQQRILPAIAAVGGMVVPALIY----AAFNYNNP-E-----TLRGW 126 (389)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHH----heeecCCC-c-----ccCcc
Confidence 456667777776 8889999999988874 344444 456777888887642 22211111 0 01112
Q ss_pred HHHHhhchHHHHHHHHHHhc-cccChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccchhhHHHHHHHHHHHHHHHH
Q 036516 99 VVVNSMTSLVVITGLLKELK-MLNSELGRLAASITIVSHIFGWSASMILLSVRDSQDNLTTIKPLYITLVVIVYYIIVIF 177 (709)
Q Consensus 99 ~~~ls~Ts~~vv~~iL~el~-ll~s~~G~lals~a~v~D~~~~~ll~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 177 (709)
|+-++ |..+-..-+|.=+| -....+-...++-|++||+.++++++++.+ .+ ....+ ......++.++
T Consensus 127 gIPmA-TDIAFAlgvL~llG~rvP~~Lr~FLlaLAIvDDlgAI~VIA~FYt---~~--i~~~~---L~~a~~~~~~l--- 194 (389)
T PRK09560 127 AIPAA-TDIAFALGVLALLGKRVPVSLKVFLLALAIIDDLGAIVIIALFYT---SD--LSLPA---LALAAIAIAVL--- 194 (389)
T ss_pred ccccH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeecC---CC--CCHHH---HHHHHHHHHHH---
Confidence 22221 22222222222122 134556788899999999999998887653 11 22333 33332222211
Q ss_pred HHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHhcCCCCCh------hhHHHhhhhhhh
Q 036516 178 LVRPLTMRIVSKNSEEESMNQNHFIITICIVLVTTILGTLVGQNSILTAFFFGLCLPDGPPL------GTQLVQKLDFFT 251 (709)
Q Consensus 178 v~r~~~~~i~~~~~~~~~~~e~~~~~vl~~~l~~~~~~~~~G~~~~lGaf~~Gl~ip~~~~~------~~~l~~kl~~~~ 251 (709)
++.+|.. ++....+.++.+++..+. ...|+|+.++..++|+++|..++. .+++++++++++
T Consensus 195 -------~~ln~~~----v~~~~~Y~~~G~~lW~~~--l~SGvHaTiAGV~la~~iP~~~~~~~~~~pl~rleh~L~p~v 261 (389)
T PRK09560 195 -------FLLNRLG----VTKLTPYLIVGAILWFAV--LKSGVHATLAGVVLAFCIPLKGKKGDEESPLHHLEHALHPWV 261 (389)
T ss_pred -------HHHHHcC----CccchHHHHHHHHHHHHH--HHccccHHHHHHHHHHhccccCCCCCCCCHHHHHHHHhhhhh
Confidence 1122221 233445555554443333 578999999999999999974322 367899999999
Q ss_pred HhhhhHHH-HHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHhHhhh----------CCCHHHHHHHHHHhhhhh
Q 036516 252 SGFLLPVF-CAISGIRMELYLINEKSFIKIEFIILMSYLGKFTGVMVPSLFF----------GMSFLKASCLALIMCCRG 320 (709)
Q Consensus 252 ~~~flPlF-F~~~G~~~d~~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~~~~~~lg~~m~~kG 320 (709)
..+.+|+| |+..|..++-..+....-.....+++..++||.+|.++.++.. +++|++-..+|++-+.--
T Consensus 262 ~~~IlPlFAlaNAGV~l~~~~~~~~~~pv~~gI~~GLv~GK~lGI~~~s~l~vkl~~~~lP~g~~w~~l~gv~~L~GIGF 341 (389)
T PRK09560 262 AFAILPLFAFANAGVSLAGISLSSLTSPVPLGIALGLFLGKQVGVFGFSWLAVKLGLAKLPEGANWKQIYGVSVLCGIGF 341 (389)
T ss_pred hhhhHHHHHhhcCCeeecCCcHHhccCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999 7889988843222211112344566667789999988876543 478999999999877778
Q ss_pred hHHHHHHHhhhc
Q 036516 321 IAEIAVYCMWKD 332 (709)
Q Consensus 321 ~~~l~~~~~~~~ 332 (709)
.+++.+++.++.
T Consensus 342 TmSLFIa~LAF~ 353 (389)
T PRK09560 342 TMSLFIGSLAFG 353 (389)
T ss_pred HHHHHHHHhhcC
Confidence 899999999983
No 25
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=99.27 E-value=4.5e-11 Score=112.66 Aligned_cols=137 Identities=11% Similarity=0.144 Sum_probs=92.8
Q ss_pred eeEEEeccCCChHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCccccccC-cccc---ccchhchhHHHHHHHHHHHhc
Q 036516 386 RILVCIHKEQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLKPH-HQQT---KSEAASSTQLINAFTQFQRCY 461 (709)
Q Consensus 386 riLv~v~~~~~~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~~~~~-~~~~---~~~~~~~~~i~~af~~~~~~~ 461 (709)
+||||++.+++...+++.+..++.. ...+++++|+++.+... +..... .... +......++.++.+.+..+
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~--~~~~l~ll~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 75 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLAT--KGQTIVLVHVHPPITSI-PSSSGKLEVASAYKQEEDKEAKELLLPYRCFCS-- 75 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccC--CCCcEEEEEeccCcccC-CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 5899999999999999999988843 45799999998764221 100000 0000 0111222333333332221
Q ss_pred CcceEEEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhH-HHHHHHhhcCC--ccEEEEE
Q 036516 462 YGHVVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIR-ALNRNVLHKAP--CSVGILV 535 (709)
Q Consensus 462 ~~~v~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~-~~~~~Vl~~ap--CsVgIlv 535 (709)
..++.++.....+ .++.+.|++.|++.++|+||||.|++.+.... .+| ++.++|++++| |||.|+.
T Consensus 76 ~~~~~~~~~~~~g--~~~~~~I~~~a~~~~~dlIV~Gs~g~~~l~~~------~~gssva~~Vi~~a~~~c~Vlvv~ 144 (146)
T cd01989 76 RKGVQCEDVVLED--DDVAKAIVEYVADHGITKLVMGASSDNHFSMK------FKKSDVASSVLKEAPDFCTVYVVS 144 (146)
T ss_pred hcCCeEEEEEEeC--CcHHHHHHHHHHHcCCCEEEEeccCCCceeec------ccCCchhHHHHhcCCCCceEEEEe
Confidence 2456777665554 47999999999999999999999998765433 356 69999999999 9998754
No 26
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=99.27 E-value=8.7e-10 Score=116.60 Aligned_cols=272 Identities=15% Similarity=0.238 Sum_probs=167.5
Q ss_pred HHHHHHHHHHHH-HHHHHHhhhcChHHHH---hhhhhH---HHHHHHHHHHHHHHHHHHHHHHhhhccCCchhhHHHHHH
Q 036516 26 YVLRTFAEFGMI-LHAFVLGVQIDLGLVK---HIRKRA---VIIGITSTLLPLVFGLSSFRIVQRISHLDDETASSIAAS 98 (709)
Q Consensus 26 ~~l~~la~iGli-~~lF~~Gle~d~~~l~---~~~~~~---~~i~~~~~~ip~~~g~~~~~~l~~~~~~~~~~~~~~l~l 98 (709)
..+..+-+=|++ +|.|.+|+|++-+.+. ++.||+ ..-++.|+++|.++= +.+.. ..+. ..--+
T Consensus 57 ~~l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lPi~AAlGGmivPAliy----~~~n~-~~~~-----~~~GW 126 (388)
T PRK09561 57 KPLLLWINDGLMAVFFLLIGLEVKRELLEGSLASRRQAALPVIAAIGGMLVPALIY----LLFNY-ADPV-----TREGW 126 (388)
T ss_pred CcHHHHHHhhHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhchHHHHHHH----hheec-CCCc-----ccCcc
Confidence 346667777776 7889999999998874 344444 456677888887642 22221 1100 00111
Q ss_pred HHHHhhchHHHHHHHHHHhc-cccChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccchhhHHHHHHHHHHHHHHHH
Q 036516 99 VVVNSMTSLVVITGLLKELK-MLNSELGRLAASITIVSHIFGWSASMILLSVRDSQDNLTTIKPLYITLVVIVYYIIVIF 177 (709)
Q Consensus 99 ~~~ls~Ts~~vv~~iL~el~-ll~s~~G~lals~a~v~D~~~~~ll~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 177 (709)
++-++ |..+-..-++.=+| -....+-...++-|++||+.++++++++.+ ++ ..+.+ .......+.+ +
T Consensus 127 aIP~A-TDIAFalgvlallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt---~~--i~~~~---L~~a~~~~~~--l- 194 (388)
T PRK09561 127 AIPAA-TDIAFALGVLALLGSRVPVALKIFLLALAIIDDLGAIVIIALFYT---SD--LSMVS---LGVAAVAIAV--L- 194 (388)
T ss_pred ccccH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeecC---CC--ccHHH---HHHHHHHHHH--H-
Confidence 21111 22222222222222 134556788899999999999999887753 11 22333 2222222111 1
Q ss_pred HHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHhcCCCCCh----hhHHHhhhhhhhHh
Q 036516 178 LVRPLTMRIVSKNSEEESMNQNHFIITICIVLVTTILGTLVGQNSILTAFFFGLCLPDGPPL----GTQLVQKLDFFTSG 253 (709)
Q Consensus 178 v~r~~~~~i~~~~~~~~~~~e~~~~~vl~~~l~~~~~~~~~G~~~~lGaf~~Gl~ip~~~~~----~~~l~~kl~~~~~~ 253 (709)
++.+|.. ++....+.++.+++..+. ...|+|+.++..+.|+++|...+. .+++++++++++..
T Consensus 195 -------~~ln~~~----v~~~~~Y~~~G~~lW~~~--l~SGvHaTiAGV~la~~iP~~~~~~~~pl~rleh~L~p~v~~ 261 (388)
T PRK09561 195 -------AVLNLCG----VRRTSVYILVGVVLWVAV--LKSGVHATLAGVIVGFFIPLKEKHGRSPAERLEHGLHPWVAF 261 (388)
T ss_pred -------HHHHHcC----CccchHHHHHHHHHHHHH--HHccccHHHHHHHHHhhccccCCCCCCHHHHHHHHhhhhhhh
Confidence 1122221 233445555554443332 578999999999999999974221 36789999999999
Q ss_pred hhhHHH-HHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHhHhhh----------CCCHHHHHHHHHHhhhhhhH
Q 036516 254 FLLPVF-CAISGIRMELYLINEKSFIKIEFIILMSYLGKFTGVMVPSLFF----------GMSFLKASCLALIMCCRGIA 322 (709)
Q Consensus 254 ~flPlF-F~~~G~~~d~~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~~~~~~lg~~m~~kG~~ 322 (709)
+.+|+| |+..|..++-..+....-.....+++..++||.+|.+..++.. +++|++-..+|++-..--.+
T Consensus 262 ~IlPlFAfaNAGV~l~~~~~~~~~~pv~lgV~~GL~~GK~lGI~~~~~l~vkl~~~~lP~g~~w~~l~gv~~L~GIGFTm 341 (388)
T PRK09561 262 LILPLFAFANAGVSLQGVTLDGLTSPLPLGIALGLFIGKPLGIFLFSWLAVKLKLAKLPEGTTFKQIYAVGVLCGIGFTM 341 (388)
T ss_pred eeHHHHHhhcCCeeeccCcHHhhcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999 7888888732222211112334566667789999988876543 47899999999977777789
Q ss_pred HHHHHHhhhc
Q 036516 323 EIAVYCMWKD 332 (709)
Q Consensus 323 ~l~~~~~~~~ 332 (709)
++.+.+.+++
T Consensus 342 SLFIa~LAF~ 351 (388)
T PRK09561 342 SIFIASLAFG 351 (388)
T ss_pred HHHHHHHhcC
Confidence 9999999985
No 27
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=99.26 E-value=1.5e-10 Score=126.99 Aligned_cols=319 Identities=13% Similarity=0.089 Sum_probs=203.9
Q ss_pred HHHHHHhhhcChHHHHhhhhhHHHHHHHHHHHHH-HHHHHHHHHHhhhccCCchhhHHHHHHHHHHhhchHHHHHHHHHH
Q 036516 38 LHAFVLGVQIDLGLVKHIRKRAVIIGITSTLLPL-VFGLSSFRIVQRISHLDDETASSIAASVVVNSMTSLVVITGLLKE 116 (709)
Q Consensus 38 ~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~ip~-~~g~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~e 116 (709)
-+.|..|.+++-+.++|+.......++.|..+.. ++|.++.++.. ........+..++++|+.+|.|.+..+..++.|
T Consensus 108 piif~sgy~l~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~-~~~~~~~~f~d~L~fGaliSATDPVtvLaIfne 186 (575)
T KOG1965|consen 108 PIIFNSGYSLKKKQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGF-GLLIYDLSFKDCLAFGALISATDPVTVLAIFNE 186 (575)
T ss_pred hhhhcccceechhhhhhhhHHHHHhhhcceeeehhHHhhHHHHHhc-ccccccccHHHHHHHhhHhcccCchHHHHHHHH
Confidence 4679999999999999999999999988877664 45555544433 222233457899999999999999999999999
Q ss_pred hccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-cc---chh-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 036516 117 LKMLNSELGRLAASITIVSHIFGWSASMILLSVRDSQDN-LT---TIK-PLYITLVVIVYYIIVIFLVRPLTMRIVSKNS 191 (709)
Q Consensus 117 l~ll~s~~G~lals~a~v~D~~~~~ll~i~~~~~~~~~~-~~---~~~-~~~~~~~~i~~~~~~~~v~r~~~~~i~~~~~ 191 (709)
++ ....+-.++-+.+++||.++++++..+......+.+ +. .+. .++.+....+..+..+++. ..+.|.+.
T Consensus 187 l~-vd~~Ly~LVFGESvLNDAvsIVlf~~i~~~~~~~~~~~~~~~~ig~Fl~~F~gS~~lGv~~Glis----A~~lK~~~ 261 (575)
T KOG1965|consen 187 LG-VDPKLYTLVFGESVLNDAVSIVLFNTIQKFQLGSLNDWTAFSAIGNFLYTFFGSLGLGVAIGLIS----ALVLKFLY 261 (575)
T ss_pred hC-CCcceeeeeecchhccchhHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 98 466788999999999999999999877766544322 11 111 0112222222222222222 22223222
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHhcCCC-----CChhhHHHhhhhhhhHhhhhHHHHHHhhh-
Q 036516 192 EEESMNQNHFIITICIVLVTTILGTLVGQNSILTAFFFGLCLPDG-----PPLGTQLVQKLDFFTSGFLLPVFCAISGI- 265 (709)
Q Consensus 192 ~~~~~~e~~~~~vl~~~l~~~~~~~~~G~~~~lGaf~~Gl~ip~~-----~~~~~~l~~kl~~~~~~~flPlFF~~~G~- 265 (709)
-++ -...+..+.+++....++++|.+|+++++.-++.|+.+.+. .+..+.-.+.+-.+...+---+-|.++|+
T Consensus 262 l~~-~~~lE~al~ll~sY~sY~lAE~~~lSGIvtVlFcGI~msHYt~~NlS~~Sqit~kh~f~~lsflAEtfIF~Y~Gl~ 340 (575)
T KOG1965|consen 262 LRR-TPSLESALMLLMSYLSYLLAEGCGLSGIVTVLFCGIVMSHYTYHNLSGESQITTKHFFRTLSFLAETFIFIYLGLS 340 (575)
T ss_pred hcC-CcHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 211 13456778888899999999999999999999999999864 22233334444444456666778999995
Q ss_pred ccccccccchhhHHHHHHHHHHHHHHHHHHHHhHhhhC----------CCHHHHHHHHHHhhhhhhHHHHHHHhhh-cc-
Q 036516 266 RMELYLINEKSFIKIEFIILMSYLGKFTGVMVPSLFFG----------MSFLKASCLALIMCCRGIAEIAVYCMWK-DR- 333 (709)
Q Consensus 266 ~~d~~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~----------~~~~~~~~lg~~m~~kG~~~l~~~~~~~-~~- 333 (709)
-++...........+....++.+++|..-.+-.+.+.+ .|.++-..+.|.=.-||.++++++.--. +.
T Consensus 341 ~f~~~k~~~~~~~fv~~~~vlV~lgRa~nvfPLs~L~N~~rr~k~~~~i~~~~q~~~~w~g~lRGAvs~ALa~~~~~~~~ 420 (575)
T KOG1965|consen 341 AFDFQKHVYKSLQFVFGAGVLVLLGRAANVFPLSFLLNLFRRHKECDLIDDKYQVIMWWAGGLRGAVSFALALGDFTDSP 420 (575)
T ss_pred HhcccceeeechHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccccChHHhhHhHhhhhhhHHHHHHHHhhhccccc
Confidence 33443333222233445555666777766555554443 3444455555544479999988764321 11
Q ss_pred ----CccchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 036516 334 ----KIITNQIFAIMITNMVIITGISTTIVGYLY 363 (709)
Q Consensus 334 ----~~i~~~~~~~lv~~~ll~t~i~~plv~~ly 363 (709)
+.+-..+..++++.+++....+.|+++++.
T Consensus 421 ~~~~q~i~tttl~vVlfT~lv~Gg~T~pml~~L~ 454 (575)
T KOG1965|consen 421 HTGGQTIFTTTLVVVLFTVLVFGGSTKPMLSYLM 454 (575)
T ss_pred cccccEEEEeeeeeeeeeeeeeCCccHHHHHHhc
Confidence 222223333444444444556889999876
No 28
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.23 E-value=3.2e-09 Score=111.97 Aligned_cols=273 Identities=16% Similarity=0.183 Sum_probs=167.2
Q ss_pred HHHHHHHHHHHH-HHHHHHhhhcChHHHH---hhhhhH---HHHHHHHHHHHHHHHHHHHHHHhhhccCCchhhHHHHHH
Q 036516 26 YVLRTFAEFGMI-LHAFVLGVQIDLGLVK---HIRKRA---VIIGITSTLLPLVFGLSSFRIVQRISHLDDETASSIAAS 98 (709)
Q Consensus 26 ~~l~~la~iGli-~~lF~~Gle~d~~~l~---~~~~~~---~~i~~~~~~ip~~~g~~~~~~l~~~~~~~~~~~~~~l~l 98 (709)
..++...+=|++ +|.|.+|+|++-+.+. ++.||+ ..-++.|+++|.++=.. +... + . ..--+
T Consensus 54 ~~l~~WiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP~~AAlGGmivPAlIy~~----~n~~-~-~-----~~~GW 122 (383)
T PRK14854 54 KNLMHWINDGLMAIYFLYIGLEIKREIIVGTLSKPSNIITPAIAAFAGLAMPSLIYLS----INHD-I-K-----VINGW 122 (383)
T ss_pred CcHHHHHHhhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHHh----hccC-C-c-----ccCcc
Confidence 356667777776 7889999999988774 344444 45677788888765222 2111 1 0 01112
Q ss_pred HHHHh-hchHHHHHHHHHHhccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccchhhHHHHHHHHHHHHHHHH
Q 036516 99 VVVNS-MTSLVVITGLLKELKMLNSELGRLAASITIVSHIFGWSASMILLSVRDSQDNLTTIKPLYITLVVIVYYIIVIF 177 (709)
Q Consensus 99 ~~~ls-~Ts~~vv~~iL~el~ll~s~~G~lals~a~v~D~~~~~ll~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 177 (709)
|+-++ -++|.+-+..+--.+ ....+--..++-|++||+.++++++++.+ ++ ..+.+ .......+.+ ++
T Consensus 123 ~IP~ATDIAFAlgvLallG~r-vP~~lrvFLlaLAIvDDlgAI~VIAlFYt---~~--i~~~~---L~~A~~~~~~--l~ 191 (383)
T PRK14854 123 AIPSATDIAFTLGILALLGTR-VPAKLKLLVITIAIFDDIAAIAIIAIFYT---KS--LSLLS---LSLGTLFILA--MI 191 (383)
T ss_pred ccccHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhhhhHhheeeecC---CC--ccHHH---HHHHHHHHHH--HH
Confidence 22221 133333332222222 34556677888899999999998887653 11 22222 2222211111 11
Q ss_pred HHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHhcCCCCCh----hhHHHhhhhhhhHh
Q 036516 178 LVRPLTMRIVSKNSEEESMNQNHFIITICIVLVTTILGTLVGQNSILTAFFFGLCLPDGPPL----GTQLVQKLDFFTSG 253 (709)
Q Consensus 178 v~r~~~~~i~~~~~~~~~~~e~~~~~vl~~~l~~~~~~~~~G~~~~lGaf~~Gl~ip~~~~~----~~~l~~kl~~~~~~ 253 (709)
+ ++| +. .++....+.++.+++..+ ....|+|+.++..+.|+++|...+. .+++++++++++..
T Consensus 192 ~----~nr---~~----~v~~~~~Y~~~G~~lW~~--~l~SGvHaTiAGV~~a~~iP~~~~~~~~pl~rleh~L~p~v~~ 258 (383)
T PRK14854 192 I----CNR---IF----KINRSSVYVVLGFFAWFC--TIKSGVHATLAGFTTALCIPFRENDKDSPANFMEDSLHPWIIY 258 (383)
T ss_pred H----HHH---hc----CCceehHHHHHHHHHHHH--HHHhcccHHHHHHHHHHhcccCCCCCCCHHHHHHHHhhchHHH
Confidence 1 222 11 123344445544433322 3578999999999999999974211 36788999999999
Q ss_pred hhhHHH-HHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHhHhhh----------CCCHHHHHHHHHHhhhhhhH
Q 036516 254 FLLPVF-CAISGIRMELYLINEKSFIKIEFIILMSYLGKFTGVMVPSLFF----------GMSFLKASCLALIMCCRGIA 322 (709)
Q Consensus 254 ~flPlF-F~~~G~~~d~~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~~~~~~lg~~m~~kG~~ 322 (709)
+.+|+| |+..|..++-..+....-.....+++..++||.+|.+..++.. +++|++-..+|++-..--.+
T Consensus 259 ~IlPlFA~aNAGV~l~~~~~~~~~~pv~~GI~~GL~~GK~lGI~~~s~lavkl~~~~lP~g~~w~~l~gv~~L~GIGFTm 338 (383)
T PRK14854 259 FILPVFAFANAGISFSGISFSILFEPITLGIILGLFVGKQLGIFSILAVFKKLKWFKLGESFSNLQLYGISLLCGIGFTM 338 (383)
T ss_pred hhHHHHHhhcCCeeeccCcHHhhcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999 7889988842222211112344566667789999988776543 47899999999987777889
Q ss_pred HHHHHHhhhcc
Q 036516 323 EIAVYCMWKDR 333 (709)
Q Consensus 323 ~l~~~~~~~~~ 333 (709)
++.+++.+++.
T Consensus 339 SLFIa~LAF~~ 349 (383)
T PRK14854 339 SLFIGVLAFND 349 (383)
T ss_pred HHHHHHhhCCC
Confidence 99999999853
No 29
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.22 E-value=3.5e-09 Score=113.47 Aligned_cols=267 Identities=14% Similarity=0.150 Sum_probs=167.5
Q ss_pred HHHHHHHHHHHH-HHHHHHhhhcChHHHH---hhhhhH---HHHHHHHHHHHHHHHHHHHHHHhhhccCCchhhHHHHHH
Q 036516 26 YVLRTFAEFGMI-LHAFVLGVQIDLGLVK---HIRKRA---VIIGITSTLLPLVFGLSSFRIVQRISHLDDETASSIAAS 98 (709)
Q Consensus 26 ~~l~~la~iGli-~~lF~~Gle~d~~~l~---~~~~~~---~~i~~~~~~ip~~~g~~~~~~l~~~~~~~~~~~~~~l~l 98 (709)
..+..+-+=|++ +|.|.+|+|++-+.+. ++.|++ ..-++.|+++|.++= +.+. ...+. .--+
T Consensus 61 ~sl~~wINDgLMaiFFf~VGLEIKrE~l~GeLs~~r~a~lPiiAAlGGmivPAlIy----~~~n-~~~~~------~~GW 129 (423)
T PRK14855 61 LSLEHWVNDGLMAVFFLLVGLEIKRELLIGELSSPRQAALAVVAALGGMLVPAALY----TALN-AGGPG------ASGW 129 (423)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHhchHHHHHHH----heee-cCCCc------cCcc
Confidence 356667777776 8889999999998874 344554 456677888887642 2221 11111 1122
Q ss_pred HHHHhh-chHHHHHHHHHHhcc-ccChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccchhhHHHHHHHHHHHHHHH
Q 036516 99 VVVNSM-TSLVVITGLLKELKM-LNSELGRLAASITIVSHIFGWSASMILLSVRDSQDNLTTIKPLYITLVVIVYYIIVI 176 (709)
Q Consensus 99 ~~~ls~-Ts~~vv~~iL~el~l-l~s~~G~lals~a~v~D~~~~~ll~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 176 (709)
|+-+++ ++|.+- +|.=+|- ..+.+-...++-|++||+.++++++++.+ ++ ....+ ..++.+++.++
T Consensus 130 gIPmATDIAFAlg--vLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt---~~--i~~~~---L~~a~~~~~~l-- 197 (423)
T PRK14855 130 GVPMATDIAFALG--VLALLGSRVPLGLKVFLTALAIVDDLGAVLVIALFYT---SG--LNLLA---LLLAALTWALA-- 197 (423)
T ss_pred ccccHHHHHHHHH--HHHHhcCCCCHHHHHHHHHHHHHhhhhhheeeEeecC---CC--CCHHH---HHHHHHHHHHH--
Confidence 222221 333332 2222332 33456688899999999999998887753 11 22333 33332222211
Q ss_pred HHHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHhcCCCCC-h----------------
Q 036516 177 FLVRPLTMRIVSKNSEEESMNQNHFIITICIVLVTTILGTLVGQNSILTAFFFGLCLPDGPP-L---------------- 239 (709)
Q Consensus 177 ~v~r~~~~~i~~~~~~~~~~~e~~~~~vl~~~l~~~~~~~~~G~~~~lGaf~~Gl~ip~~~~-~---------------- 239 (709)
++.+|. .++....++++.+++..+. ...|+|+.++..+.|+++|..++ .
T Consensus 198 --------~~ln~~----~v~~~~~Y~~~G~~lW~~~--l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~ 263 (423)
T PRK14855 198 --------LLAGRL----GVTSLKIYAVLGALLWFFV--LKSGLHPTVAGVLLALAVPIRRRDPLPYLASLLDAAAPGRP 263 (423)
T ss_pred --------HHHHHc----CCccccHHHHHHHHHHHHH--HHhcccHHHHHHHHHHhccccccccchhHHHHHHHhhcccc
Confidence 112221 1233444555554443332 57899999999999999997411 1
Q ss_pred --------------------hhHHHhhhhhhhHhhhhHHH-HHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHh
Q 036516 240 --------------------GTQLVQKLDFFTSGFLLPVF-CAISGIRMELYLINEKSFIKIEFIILMSYLGKFTGVMVP 298 (709)
Q Consensus 240 --------------------~~~l~~kl~~~~~~~flPlF-F~~~G~~~d~~~l~~~~~~~~~~ii~~~~~~K~~~~~l~ 298 (709)
.+++++.+++++..+.+|+| |+..|..++-.. ... ....+++..++||.+|.+..
T Consensus 264 ~~~~~~~~~~~~~~~~~~~Pl~rleh~L~p~vaf~IlPlFAfaNAGV~l~~~~-~~p---v~lGI~~GLvvGK~lGI~~~ 339 (423)
T PRK14855 264 EVVGARLRDLEDLLERAQSPLHRLEHALHPWSTFLILPVFALFNAGVSVSGGG-LGT---VSLGVFLGLLLGKPLGVVGG 339 (423)
T ss_pred hhhhHHHHhhhhhccccCCHHHHHHHHhhhhHHHhhHHHHHhhcCCeeecCCC-CCc---HHHHHHHHHHhcchHHHHHH
Confidence 24678888899999999999 788998884333 222 23455566678999998887
Q ss_pred Hhhh----------CCCHHHHHHHHHHhhhhhhHHHHHHHhhhcc
Q 036516 299 SLFF----------GMSFLKASCLALIMCCRGIAEIAVYCMWKDR 333 (709)
Q Consensus 299 ~~~~----------~~~~~~~~~lg~~m~~kG~~~l~~~~~~~~~ 333 (709)
++.. +++|++-..+|++-+.--.+++.+++.+++.
T Consensus 340 s~lavkl~~a~lP~g~~w~~l~gv~~LaGIGFTmSLFIa~LAF~~ 384 (423)
T PRK14855 340 AWLAVRLGLASLPRRVNWLHMLGAGLLAGIGFTMSLFISNLAFAD 384 (423)
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 6553 4789999999998777788999999999853
No 30
>PRK09982 universal stress protein UspD; Provisional
Probab=99.20 E-value=9.1e-11 Score=110.26 Aligned_cols=133 Identities=8% Similarity=0.028 Sum_probs=87.3
Q ss_pred eeEEEeccCCChHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCccccccCccccccchhchhHHHHHHHHHHHhcCcce
Q 036516 386 RILVCIHKEQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLKPHHQQTKSEAASSTQLINAFTQFQRCYYGHV 465 (709)
Q Consensus 386 riLv~v~~~~~~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~~v 465 (709)
+||+|++.+++...+++.+..++ +..+.+++++|+++......+........ .......++..+.++++.+.. ...
T Consensus 5 ~ILvavD~S~~s~~al~~A~~lA--~~~~a~l~llhV~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~-~~~ 80 (142)
T PRK09982 5 HIGVAISGNEEDALLVNKALELA--RHNDAHLTLIHIDDGLSELYPGIYFPATE-DILQLLKNKSDNKLYKLTKNI-QWP 80 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHH--HHhCCeEEEEEEccCcchhchhhhccchH-HHHHHHHHHHHHHHHHHHHhc-CCC
Confidence 79999999999999999998888 44568999999987542111100000000 001111122223344443222 223
Q ss_pred EEEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEE
Q 036516 466 VVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGIL 534 (709)
Q Consensus 466 ~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIl 534 (709)
.++..+..+ ++.+.||+.|++.++||||||.| +.+.. ..++ +.++|+++|+|||.|+
T Consensus 81 ~~~~~v~~G---~p~~~I~~~A~~~~aDLIVmG~~-~~~~~-------~~~~-va~~V~~~s~~pVLvv 137 (142)
T PRK09982 81 KTKLRIERG---EMPETLLEIMQKEQCDLLVCGHH-HSFIN-------RLMP-AYRGMINKMSADLLIV 137 (142)
T ss_pred cceEEEEec---CHHHHHHHHHHHcCCCEEEEeCC-hhHHH-------HHHH-HHHHHHhcCCCCEEEe
Confidence 455555666 89999999999999999999976 43322 2354 9999999999999886
No 31
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=99.17 E-value=1.8e-10 Score=108.35 Aligned_cols=134 Identities=7% Similarity=0.067 Sum_probs=86.1
Q ss_pred ceeEEEeccCCChHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCccccccCccccccchhchhHHHHHHHHHHHhcCcc
Q 036516 385 LRILVCIHKEQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLKPHHQQTKSEAASSTQLINAFTQFQRCYYGH 464 (709)
Q Consensus 385 ~riLv~v~~~~~~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~~ 464 (709)
-|||+|++.+++...+++.+..++. ....+++++|+........+....... ........++..+.++++.+. .+
T Consensus 4 ~~ILvavD~S~~s~~al~~a~~la~--~~~a~l~ll~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~--~~ 78 (144)
T PRK15118 4 KHILIAVDLSPESKVLVEKAVSMAR--PYNAKVSLIHVDVNYSDLYTGLIDVNL-GDMQKRISEETHHALTELSTN--AG 78 (144)
T ss_pred eEEEEEccCChhHHHHHHHHHHHHH--hhCCEEEEEEEccChhhhhhhhhhcch-HHHHHHHHHHHHHHHHHHHHh--CC
Confidence 3799999999999999999988873 345789999984321111000000000 000111122333444554432 23
Q ss_pred eEEE-EEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEEE
Q 036516 465 VVVQ-HFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGILV 535 (709)
Q Consensus 465 v~v~-~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIlv 535 (709)
+.+. .....+ +.++.|++.|++.++||||||.|++. . + .+||+.++|+++|||||.|+.
T Consensus 79 ~~~~~~~~~~G---~p~~~I~~~a~~~~~DLIV~Gs~~~~-----~---~-~lgSva~~v~~~a~~pVLvv~ 138 (144)
T PRK15118 79 YPITETLSGSG---DLGQVLVDAIKKYDMDLVVCGHHQDF-----W---S-KLMSSARQLINTVHVDMLIVP 138 (144)
T ss_pred CCceEEEEEec---CHHHHHHHHHHHhCCCEEEEeCcccH-----H---H-HHHHHHHHHHhhCCCCEEEec
Confidence 4443 333344 89999999999999999999999631 1 1 268999999999999998864
No 32
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=99.11 E-value=3.9e-10 Score=103.10 Aligned_cols=122 Identities=16% Similarity=0.137 Sum_probs=89.3
Q ss_pred eeEEEeccCCChHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCccccccCccccccchhchhHHHHHHHHHHHhcCcce
Q 036516 386 RILVCIHKEQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLKPHHQQTKSEAASSTQLINAFTQFQRCYYGHV 465 (709)
Q Consensus 386 riLv~v~~~~~~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~~v 465 (709)
|||+|+++++....+++.+..++.. .+..++++|+.+-... + .....++.++.+.+..+. .++
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~--~~~~l~ll~v~~~~~~--~-----------~~~~~~~~l~~~~~~~~~--~~~ 63 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADR--LKAPWYVVYVETPRLN--R-----------LSEAERRRLAEALRLAEE--LGA 63 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHH--hCCCEEEEEEecCccc--c-----------CCHHHHHHHHHHHHHHHH--cCC
Confidence 6999999999999999999988843 4579999999863211 0 011223444444444332 223
Q ss_pred EEEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcC-CccEEEE
Q 036516 466 VVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKA-PCSVGIL 534 (709)
Q Consensus 466 ~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~a-pCsVgIl 534 (709)
. ..+..+ .+..+.|++.+++.++|+|+||+|++...... .+|++.++|+++| ||||.|.
T Consensus 64 ~--~~~~~~--~~~~~~I~~~~~~~~~dllviG~~~~~~~~~~------~~Gs~~~~v~~~a~~~~v~v~ 123 (124)
T cd01987 64 E--VVTLPG--DDVAEAIVEFAREHNVTQIVVGKSRRSRWREL------FRGSLVDRLLRRAGNIDVHIV 123 (124)
T ss_pred E--EEEEeC--CcHHHHHHHHHHHcCCCEEEeCCCCCchHHHH------hcccHHHHHHHhCCCCeEEEe
Confidence 3 333344 57899999999999999999999988665433 5899999999999 9999874
No 33
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=99.10 E-value=2.6e-10 Score=105.16 Aligned_cols=134 Identities=14% Similarity=0.200 Sum_probs=89.8
Q ss_pred ceeEEEeccCCChHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCccccccCccccccchhchhHHHHHHH---HHHHhc
Q 036516 385 LRILVCIHKEQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLKPHHQQTKSEAASSTQLINAFT---QFQRCY 461 (709)
Q Consensus 385 ~riLv~v~~~~~~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~i~~af~---~~~~~~ 461 (709)
-|||+|++++++...+++.+..++ +....+++++|+++............ .......+......+ .....
T Consensus 3 ~~Ilv~~d~~~~~~~al~~a~~la--~~~~~~i~~l~v~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~- 75 (140)
T PF00582_consen 3 KRILVAIDGSEESRRALRFALELA--KRSGAEITLLHVIPPPPQYSFSAAED----EESEEEAEEEEQARQAEAEEAEA- 75 (140)
T ss_dssp SEEEEEESSSHHHHHHHHHHHHHH--HHHTCEEEEEEEEESCHCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred CEEEEEECCCHHHHHHHHHHHHHH--HhhCCeEEEEEeeccccccccccccc----cccccccchhhhhhhHHHHHHhh-
Confidence 389999999999999999998888 34568999999999764432110000 000000011111000 11111
Q ss_pred CcceEEEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEE
Q 036516 462 YGHVVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGIL 534 (709)
Q Consensus 462 ~~~v~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIl 534 (709)
............. +..++|++.+++.++|+||||.|++....+. .+|++.+++++++||||.|+
T Consensus 76 ~~~~~~~~~~~~~---~~~~~i~~~~~~~~~dliv~G~~~~~~~~~~------~~gs~~~~l~~~~~~pVlvv 139 (140)
T PF00582_consen 76 EGGIVIEVVIESG---DVADAIIEFAEEHNADLIVMGSRGRSGLERL------LFGSVAEKLLRHAPCPVLVV 139 (140)
T ss_dssp HTTSEEEEEEEES---SHHHHHHHHHHHTTCSEEEEESSSTTSTTTS------SSHHHHHHHHHHTSSEEEEE
T ss_pred hccceeEEEEEee---ccchhhhhccccccceeEEEeccCCCCccCC------CcCCHHHHHHHcCCCCEEEe
Confidence 1233444434444 9999999999999999999999996655443 48999999999999999886
No 34
>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH. NhaA is also believed to be responsible for adaptation to alkaline pH when sodium is available. NhaA is one of the three known sodium ion/proton antiporters in Escherichia coli along with NhaB and ChaA, though there are other mechanisms for Na+ extrusion such as NDH-I complicating the determination of the precise roles of each of the transporters [].; GO: 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane; PDB: 3FI1_A 1ZCD_A.
Probab=99.09 E-value=6.8e-10 Score=117.45 Aligned_cols=276 Identities=16% Similarity=0.224 Sum_probs=155.1
Q ss_pred HHHHHHHHHHHH-HHHHHHhhhcChHHHH---hhhhhH---HHHHHHHHHHHHHHHHHHHHHHhhhccCCchhhHHHHHH
Q 036516 26 YVLRTFAEFGMI-LHAFVLGVQIDLGLVK---HIRKRA---VIIGITSTLLPLVFGLSSFRIVQRISHLDDETASSIAAS 98 (709)
Q Consensus 26 ~~l~~la~iGli-~~lF~~Gle~d~~~l~---~~~~~~---~~i~~~~~~ip~~~g~~~~~~l~~~~~~~~~~~~~~l~l 98 (709)
..+...-+=|++ +|.|.+|+|++.+.+. ++.||+ ..-++.|+++|..+ |+......+ ...--+
T Consensus 53 ~~l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lP~~AAlGGm~vPalI-----yl~~n~~~~-----~~~~GW 122 (378)
T PF06965_consen 53 LSLHHWINDGLMAIFFFVVGLEIKRELLVGELSSPRKAALPIIAALGGMLVPALI-----YLAFNAGGP-----EAAHGW 122 (378)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHH-----HGGG--SST-----THHHHT
T ss_pred CCHHHHHHHhHHHHHHHHHHHHHHHHHhCCCCCChhhhhhHHHHHHhcchHHHHH-----HheeecCCC-----CcCceE
Confidence 345556666666 8889999999988774 344444 45667788888754 112121111 011222
Q ss_pred HHHHhhchHHHHHHHHHHhcc-ccChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccchhhHHHHHHHHHHHHHHHH
Q 036516 99 VVVNSMTSLVVITGLLKELKM-LNSELGRLAASITIVSHIFGWSASMILLSVRDSQDNLTTIKPLYITLVVIVYYIIVIF 177 (709)
Q Consensus 99 ~~~ls~Ts~~vv~~iL~el~l-l~s~~G~lals~a~v~D~~~~~ll~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 177 (709)
++-+ .|..+-...++.=+|- ....+-...++-|++||+.++++++++.+- + ....+ .......+. + .
T Consensus 123 ~IP~-ATDIAFAlgvlal~G~rvP~~lrvFLlaLAIvDDlgaIlVIA~FYt~---~--i~~~~---L~~a~~~~~-~-l- 190 (378)
T PF06965_consen 123 AIPM-ATDIAFALGVLALLGKRVPASLRVFLLALAIVDDLGAILVIALFYTD---G--ISLLW---LLLAAAALL-L-L- 190 (378)
T ss_dssp SSSS----HHHHHHHHHSS-SSS-SSSHHHHHHHHHHHHHHHHHHHHHHS----------HHH---HHHHHHHHH-H-H-
T ss_pred Eecc-cccHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhHhheeeeeCC---C--CCHHH---HHHHHHHHH-H-H-
Confidence 2222 2222222333332321 334566889999999999999998887641 1 22223 222222111 1 1
Q ss_pred HHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHhcCCCCChh--------hHHHhhhhh
Q 036516 178 LVRPLTMRIVSKNSEEESMNQNHFIITICIVLVTTILGTLVGQNSILTAFFFGLCLPDGPPLG--------TQLVQKLDF 249 (709)
Q Consensus 178 v~r~~~~~i~~~~~~~~~~~e~~~~~vl~~~l~~~~~~~~~G~~~~lGaf~~Gl~ip~~~~~~--------~~l~~kl~~ 249 (709)
|..+|.. ++....+..+.+++. +.....|+|+.++..+.|+++|..++.+ +++++++++
T Consensus 191 -------~~l~r~~----v~~~~~Y~~~G~~lW--~~~l~SGvHaTiAGV~~al~iP~~~~~~~~~~~~pl~rle~~L~p 257 (378)
T PF06965_consen 191 -------FVLNRLG----VRSLWPYLLLGILLW--YAVLKSGVHATIAGVLLALFIPARPRAGEREAESPLERLEHALHP 257 (378)
T ss_dssp -------HHHHHTT-------THHHHHHHHHHH--HHTTTSHHHHHHHHHHHHHHS---GGGS----S-HHHHHHHHHHH
T ss_pred -------HHHHHCC----CceehHHHHHHHHHH--HHHHHcCCCHHHHHHHHheeeeccCCCCcccCCCHHHHHHHHhhh
Confidence 1122221 233444444443322 2235789999999999999999865442 488999999
Q ss_pred hhHhhhhHHH-HHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHhHhhh----------CCCHHHHHHHHHHhhh
Q 036516 250 FTSGFLLPVF-CAISGIRMELYLINEKSFIKIEFIILMSYLGKFTGVMVPSLFF----------GMSFLKASCLALIMCC 318 (709)
Q Consensus 250 ~~~~~flPlF-F~~~G~~~d~~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~~~~~~lg~~m~~ 318 (709)
+++.+.+|+| |+..|..++-..+....-.....+++..++||.+|.+..++.. +++|++-..+|++-..
T Consensus 258 ~v~~~IlPlFAlaNAGV~l~~~~~~~~~~pv~lGI~~GLvvGK~lGI~~~~~la~kl~~~~lP~~~~w~~l~gv~~LaGI 337 (378)
T PF06965_consen 258 WVAFVILPLFALANAGVSLSGSSLGDLTSPVTLGIILGLVVGKPLGIFLFSWLAVKLGLARLPDGVSWRHLYGVGLLAGI 337 (378)
T ss_dssp HHHHTHHHHHHHHHS----SSS---THHHHSSTTTTHHHHHTTGGGSTTTTTTTSS-TTT----S--GGGGTTHHHHTT-
T ss_pred hhhhhhHHhHhheeCceEEecCchHhhhChHHHHHHHHHHcccchhhhhHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHH
Confidence 9999999999 7899988886554322111223455566789999988776543 4678888888887777
Q ss_pred hhhHHHHHHHhhhccCcc
Q 036516 319 RGIAEIAVYCMWKDRKII 336 (709)
Q Consensus 319 kG~~~l~~~~~~~~~~~i 336 (709)
--.+++.+++.+++..-.
T Consensus 338 GFTmSLFIa~LAF~~~~~ 355 (378)
T PF06965_consen 338 GFTMSLFIAGLAFDDPAL 355 (378)
T ss_dssp -HHHHHHHHHHHSTT-SS
T ss_pred HHHHHHHHHHHHcCChhh
Confidence 778999999999986433
No 35
>PRK10116 universal stress protein UspC; Provisional
Probab=99.01 E-value=2.5e-09 Score=100.25 Aligned_cols=136 Identities=7% Similarity=0.034 Sum_probs=88.3
Q ss_pred ceeEEEeccCCChHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCccccccCccccccchhchhHHHHHHHHHHHhcCcc
Q 036516 385 LRILVCIHKEQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLKPHHQQTKSEAASSTQLINAFTQFQRCYYGH 464 (709)
Q Consensus 385 ~riLv~v~~~~~~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~~ 464 (709)
-|||++++.+++...+++.+..++. ....+++++|+++.+..... ..............++..+.++++.+. .+
T Consensus 4 ~~ILv~~D~s~~s~~al~~A~~lA~--~~~a~l~ll~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~ 77 (142)
T PRK10116 4 SNILVAVAVTPESQQLLAKAVSIAR--PVNGKISLITLASDPEMYNQ--FAAPMLEDLRSVMQEETQSFLDKLIQD--AD 77 (142)
T ss_pred ceEEEEccCCcchHHHHHHHHHHHH--HhCCEEEEEEEccCcccchh--hhHHHHHHHHHHHHHHHHHHHHHHHHh--cC
Confidence 4799999999999999999988883 34568999999865421100 000000001111122233344444332 23
Q ss_pred eEEEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEEEe
Q 036516 465 VVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGILVH 536 (709)
Q Consensus 465 v~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIlvd 536 (709)
++...... ...+..+.|++.|++.++||||||.|++.+.+. +.++.++|++++||||.|+..
T Consensus 78 ~~~~~~~~--~~G~~~~~I~~~a~~~~~DLiV~g~~~~~~~~~--------~~s~a~~v~~~~~~pVLvv~~ 139 (142)
T PRK10116 78 YPIEKTFI--AYGELSEHILEVCRKHHFDLVICGNHNHSFFSR--------ASCSAKRVIASSEVDVLLVPL 139 (142)
T ss_pred CCeEEEEE--ecCCHHHHHHHHHHHhCCCEEEEcCCcchHHHH--------HHHHHHHHHhcCCCCEEEEeC
Confidence 43322112 335899999999999999999999998754322 347899999999999998754
No 36
>PRK11175 universal stress protein UspE; Provisional
Probab=98.97 E-value=3.3e-09 Score=112.89 Aligned_cols=144 Identities=12% Similarity=0.096 Sum_probs=91.6
Q ss_pred cceeEEEeccCCCh-------HHHHHHHHhhCCCCCCCceEEEEEeeeccCCCccccccCccccccchhchhHHHHHHHH
Q 036516 384 SLRILVCIHKEQNV-------NPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLKPHHQQTKSEAASSTQLINAFTQ 456 (709)
Q Consensus 384 e~riLv~v~~~~~~-------~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~ 456 (709)
.-+||+|++.++.. ..+++.+..++... ....++++|+.+..........+............++..+.+++
T Consensus 152 ~~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~~-~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 230 (305)
T PRK11175 152 GGKILVAVNVASEEPYHDALNEKLVEEAIDLAEQL-NHAEVHLVNAYPVTPINIAIELPEFDPSVYNDAIRGQHLLAMKA 230 (305)
T ss_pred CCeEEEEeCCCCCccchhHHHHHHHHHHHHHHhhC-cCCceEEEEEecCcchhccccccccchhhHHHHHHHHHHHHHHH
Confidence 35899999987654 45788887776332 14689999998754321100000000000011112233344555
Q ss_pred HHHhcCcceEE-EEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEEE
Q 036516 457 FQRCYYGHVVV-QHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGILV 535 (709)
Q Consensus 457 ~~~~~~~~v~v-~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIlv 535 (709)
+.+.. +++. +..+.. .+..+.|++.|+++++||||||.|++.+..+. .+|++.++|++++||||.++.
T Consensus 231 ~~~~~--~~~~~~~~v~~---G~~~~~I~~~a~~~~~DLIVmG~~~~~~~~~~------llGS~a~~v~~~~~~pVLvv~ 299 (305)
T PRK11175 231 LRQKF--GIDEEQTHVEE---GLPEEVIPDLAEHLDAELVILGTVGRTGLSAA------FLGNTAEHVIDHLNCDLLAIK 299 (305)
T ss_pred HHHHh--CCChhheeecc---CCHHHHHHHHHHHhCCCEEEECCCccCCCcce------eecchHHHHHhcCCCCEEEEc
Confidence 54332 2332 222233 47889999999999999999999998776554 489999999999999999987
Q ss_pred ecCC
Q 036516 536 HRGQ 539 (709)
Q Consensus 536 drg~ 539 (709)
.+|+
T Consensus 300 ~~~~ 303 (305)
T PRK11175 300 PDGY 303 (305)
T ss_pred CCCC
Confidence 6654
No 37
>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=98.95 E-value=3.7e-07 Score=92.96 Aligned_cols=271 Identities=15% Similarity=0.241 Sum_probs=166.6
Q ss_pred HHHHHHHHHHHHH-HHHHHHhhhcChHHHH---hhhhhH---HHHHHHHHHHHHHHHHHHHHHHhhhccCCchhhHHHHH
Q 036516 25 RYVLRTFAEFGMI-LHAFVLGVQIDLGLVK---HIRKRA---VIIGITSTLLPLVFGLSSFRIVQRISHLDDETASSIAA 97 (709)
Q Consensus 25 ~~~l~~la~iGli-~~lF~~Gle~d~~~l~---~~~~~~---~~i~~~~~~ip~~~g~~~~~~l~~~~~~~~~~~~~~l~ 97 (709)
...+...-+=|++ +|.+.+|+|++.+.+. ++++++ ..-++.|++.|-.+ |++.....+.. .--
T Consensus 59 ~~~l~~WINDgLMAvFFl~iGLEvKrEll~G~L~s~~~a~~P~iAA~GGmi~PAli-----y~~~n~~~p~~-----~~G 128 (390)
T COG3004 59 NKSLLLWINDGLMAVFFLLIGLEVKRELLEGQLSSWRNAAFPVIAAIGGMIAPALI-----YLALNAGDPAT-----LEG 128 (390)
T ss_pred cccHHHHhhhHHHHHHHHHHHHHHHHHHHcccccCchhhhhHHHHHhccchhhhhH-----hheeecCChhh-----hcC
Confidence 3445556666776 6777899999998885 444444 34556677777653 22222221100 000
Q ss_pred HHHHHhhchHHHHHHHHHHhc-cccChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccchhhHHHHHHHHHHHHHHH
Q 036516 98 SVVVNSMTSLVVITGLLKELK-MLNSELGRLAASITIVSHIFGWSASMILLSVRDSQDNLTTIKPLYITLVVIVYYIIVI 176 (709)
Q Consensus 98 l~~~ls~Ts~~vv~~iL~el~-ll~s~~G~lals~a~v~D~~~~~ll~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 176 (709)
+ ++-+.|..+-...++.=++ ...+.+.-..++-|++||+-++++++++.. .+ ....+ ...+.+. +..
T Consensus 129 W-aIP~ATDiAFAlGvlaLLG~rVP~sLKiFLlaLAI~DDlgAIvIIAlFYt---~~--Ls~~a---l~~a~~~---i~v 196 (390)
T COG3004 129 W-AIPMATDIAFALGVLALLGSRVPLSLKIFLLALAIIDDLGAIVIIALFYT---TD--LSMAA---LGIAALA---IAV 196 (390)
T ss_pred c-CcccHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcchhhhhhhhhc---CC--ccHHH---HHHHHHH---HHH
Confidence 1 1112233333333333232 245566778899999999999998887753 11 11222 2222111 111
Q ss_pred HHHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHhcCCCCCh----hhHHHhhhhhhhH
Q 036516 177 FLVRPLTMRIVSKNSEEESMNQNHFIITICIVLVTTILGTLVGQNSILTAFFFGLCLPDGPPL----GTQLVQKLDFFTS 252 (709)
Q Consensus 177 ~v~r~~~~~i~~~~~~~~~~~e~~~~~vl~~~l~~~~~~~~~G~~~~lGaf~~Gl~ip~~~~~----~~~l~~kl~~~~~ 252 (709)
. -.++|+- +.....+++...++..+. ..-|+|..+...+.|+++|-.... -+++++.+.+.+.
T Consensus 197 L---~~lN~~~--------v~~l~~Y~~~gviLW~~v--lkSGVHATLAGVi~~f~IPl~~k~~~spl~~leh~L~pwva 263 (390)
T COG3004 197 L---AVLNRLG--------VRRLSPYLLVGVILWIAV--LKSGVHATLAGVILAFFIPLKTKEGESPLERLEHALHPWVA 263 (390)
T ss_pred H---HHHHHhC--------chhhhHHHHHHHHHHHHH--HHhhhHHHHHHHHHHeeeeccCCCCCCcHHHHHHHhhhhHH
Confidence 1 1133321 122334455555554443 467999999999999999954322 4678888999999
Q ss_pred hhhhHHH-HHHhhhccc---cccccchhhHHHHHHHHHHHHHHHHHHHHhHhhh----------CCCHHHHHHHHHHhhh
Q 036516 253 GFLLPVF-CAISGIRME---LYLINEKSFIKIEFIILMSYLGKFTGVMVPSLFF----------GMSFLKASCLALIMCC 318 (709)
Q Consensus 253 ~~flPlF-F~~~G~~~d---~~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~~~~~~lg~~m~~ 318 (709)
.+.+|+| |...|..++ ...+.+. ....+++..++||.+|.+..++.. +.+|++-...+++...
T Consensus 264 f~IlPlFaFaNAGvsl~g~~~~~l~s~---l~lgI~lGL~~GKplGIf~fs~lAvkl~lA~lP~g~~~~qi~~v~iLcGI 340 (390)
T COG3004 264 FFILPLFAFANAGVSLQGVSLSGLTSP---LTLGIILGLFLGKPLGIFLFSWLAVKLKLAKLPEGISWKQIYGVSILCGI 340 (390)
T ss_pred HHHHHHHHHccCCcccccccccccccc---hHHHHHHHHHhcCcchhhhhHHHHHHhhhccCCCCCCHHHHHHHHHHHhh
Confidence 9999999 788888776 3333332 345566677889999988877653 5789999999987777
Q ss_pred hhhHHHHHHHhhhcc
Q 036516 319 RGIAEIAVYCMWKDR 333 (709)
Q Consensus 319 kG~~~l~~~~~~~~~ 333 (709)
.-.+++.+.+.+++.
T Consensus 341 GFTMSlFI~~LAf~~ 355 (390)
T COG3004 341 GFTMSLFIASLAFGS 355 (390)
T ss_pred hHHHHHHHHHHhcCC
Confidence 778899999888865
No 38
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=98.89 E-value=1.6e-08 Score=92.08 Aligned_cols=129 Identities=16% Similarity=0.188 Sum_probs=91.2
Q ss_pred eeEEEeccCCChHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCccccccCccccccchhchhHHHHHHHHHHHhcCcce
Q 036516 386 RILVCIHKEQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLKPHHQQTKSEAASSTQLINAFTQFQRCYYGHV 465 (709)
Q Consensus 386 riLv~v~~~~~~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~~v 465 (709)
+||+|+++++....+++.+..++.. .+.+++++|+.+..+.... +.. +......++.++.+....+ ..++
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~--~~~~i~~l~v~~~~~~~~~-----~~~-~~~~~~~~~~l~~~~~~~~--~~~~ 70 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARR--LGAELVLLHVVDPPPSSAA-----ELA-ELLEEEARALLEALREALA--EAGV 70 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHh--cCCEEEEEEEecCCCCcch-----hHH-HHHHHHHHHHHHHHHHHHh--cCCC
Confidence 6899999999999999999999844 4589999999875543221 000 0112223333444333221 2457
Q ss_pred EEEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEE
Q 036516 466 VVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGI 533 (709)
Q Consensus 466 ~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgI 533 (709)
+++.....+ +..++|++.+++.++|++|+|++++....+. .+++..+++++++||||.+
T Consensus 71 ~~~~~~~~~---~~~~~i~~~~~~~~~dlvvig~~~~~~~~~~------~~~~~~~~ll~~~~~pvli 129 (130)
T cd00293 71 KVETVVLEG---DPAEAILEAAEELGADLIVMGSRGRSGLRRL------LLGSVAERVLRHAPCPVLV 129 (130)
T ss_pred ceEEEEecC---CCHHHHHHHHHHcCCCEEEEcCCCCCcccee------eeccHHHHHHhCCCCCEEe
Confidence 776665555 4489999999999999999999887543322 4889999999999999976
No 39
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=98.60 E-value=6.5e-07 Score=84.27 Aligned_cols=138 Identities=13% Similarity=0.186 Sum_probs=92.8
Q ss_pred ceeEEEec-cCCChHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCccccccCcccc-----ccchhchhHHHHHHHHHH
Q 036516 385 LRILVCIH-KEQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLKPHHQQT-----KSEAASSTQLINAFTQFQ 458 (709)
Q Consensus 385 ~riLv~v~-~~~~~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~-----~~~~~~~~~i~~af~~~~ 458 (709)
-+||++++ .++......+.+...+... ...++++++++................ .......++..+..++..
T Consensus 6 ~~il~~~d~~s~~~~~a~~~a~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (154)
T COG0589 6 KKILVAVDVGSEAAEKALEEAVALAKRL--GAPLILLVVIDPLEPTALVSVALADAPIPLSEEELEEEAEELLAEAKALA 83 (154)
T ss_pred ceEEEEeCCCCHHHHHHHHHHHHHHHhc--CCeEEEEEEecccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 58999999 9999999888888877443 356667888876543322211110000 011223344555555544
Q ss_pred HhcCcceE-EEEEEEEccCCCh-hHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEEE
Q 036516 459 RCYYGHVV-VQHFTTIAPYATM-HDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGILV 535 (709)
Q Consensus 459 ~~~~~~v~-v~~~~~vs~~~~~-~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIlv 535 (709)
+. .++. ++...... +. .+.|++.|.+.++|+|+||.+++++.++. .+|++.++|++++||||.++.
T Consensus 84 ~~--~~~~~~~~~~~~g---~~~~~~i~~~a~~~~adliV~G~~g~~~l~~~------llGsvs~~v~~~~~~pVlvv~ 151 (154)
T COG0589 84 EA--AGVPVVETEVVEG---SPSAEEILELAEEEDADLIVVGSRGRSGLSRL------LLGSVAEKVLRHAPCPVLVVR 151 (154)
T ss_pred HH--cCCCeeEEEEecC---CCcHHHHHHHHHHhCCCEEEECCCCCccccce------eeehhHHHHHhcCCCCEEEEc
Confidence 32 2333 34444444 55 69999999999999999999988876653 599999999999999998764
No 40
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=98.29 E-value=1.1e-05 Score=74.13 Aligned_cols=129 Identities=15% Similarity=0.164 Sum_probs=77.9
Q ss_pred EEEEeeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCCCCCCCCchhHHHHHHHHHhhhcCCCcEEEEEEeecCh
Q 036516 554 HIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFITTDQNRPSTEMPDDHELDNQAFDEFKDSMVGNKIIFREEIVKDG 633 (709)
Q Consensus 554 ~V~~~f~Gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~v~y~e~~v~~g 633 (709)
||+++.-|.++.+.++++|.+||+.++++++++|+.++.........+.+++..++.++++........+........+|
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 80 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARAQNGEIIPLNVIEVPNHSSPSQLEVNVQRARKLLRQAERIAASLGVPVHTIIRIDH 80 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhcCCCeEEEEEEEecCCCCCcchhHHHHHHHHHHHHHHHHHhhhcCCceEEEEEecC
Confidence 47888888999999999999999999999999999873221000001111222334444444322111111122222222
Q ss_pred ---hhHHHHHHhhhcCCcEEEEecCCCCCcccccccCcCCCCCccchhhhhhhcCCCCcceEEEe
Q 036516 634 ---IGTTQVIQAFAETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEFSVLVVQ 695 (709)
Q Consensus 634 ---~~~~~~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~SvLvvq 695 (709)
+++.+.+++ .++||+++|.++... | ...-+|..-+-+... .+|+||||+
T Consensus 81 ~~~~~I~~~a~~--~~~dlIV~G~~~~~~---------~-~~~~lGs~~~~v~~~-~~~pvlvv~ 132 (132)
T cd01988 81 DIASGILRTAKE--RQADLIIMGWHGSTS---------L-RDRLFGGVIDQVLES-APCDVAVVK 132 (132)
T ss_pred CHHHHHHHHHHh--cCCCEEEEecCCCCC---------c-cceecCchHHHHHhc-CCCCEEEeC
Confidence 345555553 379999999997531 2 234588888888764 567999985
No 41
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=98.26 E-value=1.1e-05 Score=75.70 Aligned_cols=129 Identities=9% Similarity=0.143 Sum_probs=78.9
Q ss_pred EEEeeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCCCCCC---------CCchhHHHHHHHHHhhhcCCCcEEE
Q 036516 555 IVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFITTDQNRPSTEM---------PDDHELDNQAFDEFKDSMVGNKIIF 625 (709)
Q Consensus 555 V~~~f~Gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~~~~~~~---------~~~~~~d~~~l~~~~~~~~~~~v~y 625 (709)
|++++-|++..+.|+++|.++|+.++.+++++|+.++......... +..++..++.++++........+.+
T Consensus 2 ILVavD~S~~s~~al~~a~~~a~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 81 (146)
T cd01989 2 VAVAVDKDKKSKNALKWALDNLATKGQTIVLVHVHPPITSIPSSSGKLEVASAYKQEEDKEAKELLLPYRCFCSRKGVQC 81 (146)
T ss_pred EEEEecCccccHHHHHHHHHhccCCCCcEEEEEeccCcccCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeE
Confidence 7788889999999999999999999999999999873221110000 0011223345555543321112333
Q ss_pred EEEeecC---hhhHHHHHHhhhcCCcEEEEecCCCCCcccccccCcCCCCCccc-hhhhhhhcCCCC--cceEEEee
Q 036516 626 REEIVKD---GIGTTQVIQAFAETFDLFIVGKNHDPCCKATLGLSEWIEYPELG-ILGDTLVNSNDE--FSVLVVQQ 696 (709)
Q Consensus 626 ~e~~v~~---g~~~~~~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG-~igd~las~d~~--~SvLvvqq 696 (709)
....++. .+++++..++. +.||+++|+|+.. |+..+ -+| .+.+.+.-. .+ |+|||||.
T Consensus 82 ~~~~~~g~~~~~~I~~~a~~~--~~dlIV~Gs~g~~------~l~~~----~~gssva~~Vi~~-a~~~c~Vlvv~~ 145 (146)
T cd01989 82 EDVVLEDDDVAKAIVEYVADH--GITKLVMGASSDN------HFSMK----FKKSDVASSVLKE-APDFCTVYVVSK 145 (146)
T ss_pred EEEEEeCCcHHHHHHHHHHHc--CCCEEEEeccCCC------ceeec----ccCCchhHHHHhc-CCCCceEEEEeC
Confidence 3344432 23344444443 6899999998752 22221 355 688888765 44 69999985
No 42
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=97.96 E-value=3.9e-05 Score=70.22 Aligned_cols=128 Identities=18% Similarity=0.240 Sum_probs=77.4
Q ss_pred eEEEEeeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCCCCCCCCchhHHHHHHHHH---------hhhcCCCcE
Q 036516 553 YHIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFITTDQNRPSTEMPDDHELDNQAFDEF---------KDSMVGNKI 623 (709)
Q Consensus 553 ~~V~~~f~Gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~~~~~~~~~~~~~d~~~l~~~---------~~~~~~~~v 623 (709)
+||++++-|++++++|+++|.++|+.++++++++|+.++....+. ....+........++. ..... ...
T Consensus 3 ~~Ilv~~d~~~~~~~al~~a~~la~~~~~~i~~l~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 80 (140)
T PF00582_consen 3 KRILVAIDGSEESRRALRFALELAKRSGAEITLLHVIPPPPQYSF-SAAEDEESEEEAEEEEQARQAEAEEAEAEG-GIV 80 (140)
T ss_dssp SEEEEEESSSHHHHHHHHHHHHHHHHHTCEEEEEEEEESCHCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSE
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHhhCCeEEEEEeecccccccc-ccccccccccccchhhhhhhHHHHHHhhhc-cce
Confidence 579999999999999999999999999999999999983221000 0000000000000000 01111 122
Q ss_pred EEEEEeecC-hhhHHHHHHhhhcCCcEEEEecCCCCCcccccccCcCCCCCccchhhhhhhcCCCCcceEEEe
Q 036516 624 IFREEIVKD-GIGTTQVIQAFAETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEFSVLVVQ 695 (709)
Q Consensus 624 ~y~e~~v~~-g~~~~~~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~SvLvvq 695 (709)
.+......+ +.++.+.+++ .++||+++|+++.. .|.+ --+|.+.+-++.. .+|+||||.
T Consensus 81 ~~~~~~~~~~~~~i~~~~~~--~~~dliv~G~~~~~---------~~~~-~~~gs~~~~l~~~-~~~pVlvv~ 140 (140)
T PF00582_consen 81 IEVVIESGDVADAIIEFAEE--HNADLIVMGSRGRS---------GLER-LLFGSVAEKLLRH-APCPVLVVP 140 (140)
T ss_dssp EEEEEEESSHHHHHHHHHHH--TTCSEEEEESSSTT---------STTT-SSSHHHHHHHHHH-TSSEEEEEE
T ss_pred eEEEEEeeccchhhhhcccc--ccceeEEEeccCCC---------CccC-CCcCCHHHHHHHc-CCCCEEEeC
Confidence 222333333 3445555554 48999999999832 2222 2389999988874 677999973
No 43
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=97.91 E-value=0.0019 Score=66.88 Aligned_cols=122 Identities=19% Similarity=0.222 Sum_probs=78.8
Q ss_pred CcEEEcccccccccccCccCCCCcH------HHHHHHHHHHHHHHHHHHhhhcChHHHHhhhhhHHHHHHHHHHHHHHHH
Q 036516 1 GGALMGPSLLREIPYLDGLFPMGSR------YVLRTFAEFGMILHAFVLGVQIDLGLVKHIRKRAVIIGITSTLLPLVFG 74 (709)
Q Consensus 1 aGiilGPs~Lg~~~~~~~~fp~~~~------~~l~~la~iGli~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~ip~~~g 74 (709)
+|+.+=|.++|-+ .++++|.--. ..+-+=+.-=+-.++|-.|-++|++...+..||...+-+.-+++..++|
T Consensus 12 GG~mvVPLllgal--inTf~P~~l~~iG~fT~al~~G~~~iig~~l~~~Ga~I~~k~~~~~lkkg~~ll~~K~~~~~~lg 89 (314)
T PF03812_consen 12 GGMMVVPLLLGAL--INTFFPNALEIIGGFTTALFTGANPIIGVFLFCMGAQIDLKSAGKVLKKGGVLLLVKFIIGALLG 89 (314)
T ss_pred CceeHHHHHHHHH--HHhcCCChhhccCcHHHHHHcchHHHHHHHHHHhccccchhhhhHHHHhhhHHHHHHHHHHHHHH
Confidence 5777888887765 3445554211 1111111112346788899999999999999999988888888888888
Q ss_pred HHHHHHHhhhccCCc-hhhHHHHHHHHHHhhchHHHHHHHHHHhccccChhH
Q 036516 75 LSSFRIVQRISHLDD-ETASSIAASVVVNSMTSLVVITGLLKELKMLNSELG 125 (709)
Q Consensus 75 ~~~~~~l~~~~~~~~-~~~~~~l~l~~~ls~Ts~~vv~~iL~el~ll~s~~G 125 (709)
.+++.+++...-..+ ....+.+.+-.+++.+.-..=..+..|++- ++|.|
T Consensus 90 l~~~~~fg~~Gi~~g~f~GlS~LAiiaa~~~~NggLY~aL~~~yGd-~~D~g 140 (314)
T PF03812_consen 90 LLVGKFFGPEGIQSGFFLGLSALAIIAAMTNSNGGLYLALMGQYGD-EEDVG 140 (314)
T ss_pred HHHHHHcCccccccccccchHHHHHHHHHhcCCHHHHHHHHHHhCC-HHHhH
Confidence 888877765311000 123556666677777776776777777773 34444
No 44
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=97.89 E-value=0.0025 Score=66.34 Aligned_cols=287 Identities=15% Similarity=0.151 Sum_probs=154.9
Q ss_pred CcEEEcccccccccccCccCCCCcH---HHHHHH--HHH-HHHHHHHHHhhhcChHHHHhhhhhHHHHHHHHHHHHHHHH
Q 036516 1 GGALMGPSLLREIPYLDGLFPMGSR---YVLRTF--AEF-GMILHAFVLGVQIDLGLVKHIRKRAVIIGITSTLLPLVFG 74 (709)
Q Consensus 1 aGiilGPs~Lg~~~~~~~~fp~~~~---~~l~~l--a~i-Gli~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~ip~~~g 74 (709)
+|+.+=|.++|-. .+++||.--. -+-..+ +.. =+..++|-.|-++|++...+..||...+-+.-+.++.++|
T Consensus 12 gg~m~vPl~lga~--inTf~P~~l~iG~fT~alf~~g~~~il~~~~~~~Ga~I~~k~~~~~l~kg~~l~~~K~~~~~~~g 89 (312)
T PRK12460 12 GGMMVVPLLIGAL--INTFFPQALEIGGFTTALFKTGAAPLLGAFLLCMGAQISLKAAPQALLKGGVLTITKLGVAIVIG 89 (312)
T ss_pred CceeHHHHHHHHH--HHhccCcchhhCcccHHHHhcChHHHHHHHHHHhcCeeeccccchhhhhhhhhhhHHHHHHHHHH
Confidence 4666777777764 3455554210 011111 111 1336788899999999999998998888788888888888
Q ss_pred HHHHHHHhhhccCCchhhHHHHHHHHHHhhchHHHHHHHHHHhccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 036516 75 LSSFRIVQRISHLDDETASSIAASVVVNSMTSLVVITGLLKELKMLNSELGRLAASITIVSHIFGWSASMILLSVRDSQD 154 (709)
Q Consensus 75 ~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~el~ll~s~~G~lals~a~v~D~~~~~ll~i~~~~~~~~~ 154 (709)
..++.+++.. +....+.+.+-.+++.|.-..=..+..|+|- ++|.|-..+. .++|.
T Consensus 90 ~~~~~~~g~~----g~~Gls~laiiaa~~~~Ng~ly~al~~~yG~-~~d~gA~~~~--sl~~G----------------- 145 (312)
T PRK12460 90 LLVGKFFGAE----GIFGLSGLAIVAAMSNSNGGLYAALMGEFGD-ERDVGAISIL--SLNDG----------------- 145 (312)
T ss_pred HHHHHHcCcc----cccchHHHHHHHHHhcCcHHHHHHHHHHcCC-HhhhhHHhhh--hhccC-----------------
Confidence 8887777642 2223556666677777776666777778773 4444422111 11111
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHhcC
Q 036516 155 NLTTIKPLYITLVVIVYYIIVIFLVRPLTMRIVSKNSEEESMNQNHFIITICIVLVTTILGTLVGQNSILTAFFFGLCLP 234 (709)
Q Consensus 155 ~~~~~~~~~~~~~~i~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~~~vl~~~l~~~~~~~~~G~~~~lGaf~~Gl~ip 234 (709)
.+. .++.. .. .++.+ .| .. .+ -+.+=|++.|+++.
T Consensus 146 ---Pf~---tm~aL---ga----------~gLA~-ip-------~~---~l---------------v~lilpILiGmilG 180 (312)
T PRK12460 146 ---PFF---TMLAL---GA----------AGLAN-IP-------IM---AL---------------VAALLPLVLGMILG 180 (312)
T ss_pred ---cHH---HHHHH---HH----------HHHhc-CC-------hH---HH---------------HHHHHHHHHHHHHh
Confidence 111 22111 10 01111 00 00 00 01233556777777
Q ss_pred CCCChhhHHHhhhhhhhHhhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHhHhhhCCCHHHHHHHH-
Q 036516 235 DGPPLGTQLVQKLDFFTSGFLLPVFCAISGIRMELYLINEKSFIKIEFIILMSYLGKFTGVMVPSLFFGMSFLKASCLA- 313 (709)
Q Consensus 235 ~~~~~~~~l~~kl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg- 313 (709)
+..+ .+.+.+++= ..+.+|+|-+..|.++|++.+.+..+..+ ++.++.++.-++.++...|++|.+.+-+..+|
T Consensus 181 Nld~---~~~~~l~~G-i~f~I~f~~f~LG~~lnl~~I~~~G~~GI-lL~v~vv~~t~~~~~~i~rllg~~~~~g~li~s 255 (312)
T PRK12460 181 NLDP---DMRKFLTKG-GPLLIPFFAFALGAGINLSMLLQAGLAGI-LLGVLVTIVTGFFNIFADRLVGGTGIAGAAASS 255 (312)
T ss_pred ccch---hhHHHHhcc-ceEeHHHHHHHhcCCeeHHHHHHhChHHH-HHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 6432 223333332 34589999999999999988865534322 22223333445556666688898988877777
Q ss_pred -HHhhhhhhHHHHHHHhhhccCccchhHHHHHHHHHHHHHHHHHHH-HHhhcCcc
Q 036516 314 -LIMCCRGIAEIAVYCMWKDRKIITNQIFAIMITNMVIITGISTTI-VGYLYDPS 366 (709)
Q Consensus 314 -~~m~~kG~~~l~~~~~~~~~~~i~~~~~~~lv~~~ll~t~i~~pl-v~~ly~p~ 366 (709)
..-+.=|-..++...--+ +-. .+.-++.+.++++.|.+..|+ ..+.+|+.
T Consensus 256 tAGnAIcgpAAVaAadP~~--~~~-~~~Ataqvaa~vivTail~P~~t~~~~k~~ 307 (312)
T PRK12460 256 TAGNAVATPLAIAAADPSL--APV-AAAATAQVAASVIVTAILTPLLTSWVAKKE 307 (312)
T ss_pred HhhHHHHHHHHHHHhchhH--HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 433333333222221111 111 234444455555555555555 56656443
No 45
>PRK15005 universal stress protein F; Provisional
Probab=97.87 E-value=0.00015 Score=67.88 Aligned_cols=129 Identities=15% Similarity=0.117 Sum_probs=75.4
Q ss_pred eEEEEeeccCcC--hHHHHHHHHHHhcCCCeEEEEEEeeecCCCC----CCCCCCC-----chhHHHHHHHHHhhhcCCC
Q 036516 553 YHIVMLFIGGAD--DREALAYSRRMAEHPNTSLTVVWFITTDQNR----PSTEMPD-----DHELDNQAFDEFKDSMVGN 621 (709)
Q Consensus 553 ~~V~~~f~Gg~d--dreAl~~a~rma~~~~~~ltvl~v~~~~~~~----~~~~~~~-----~~~~d~~~l~~~~~~~~~~ 621 (709)
++|+++.-|+++ .+.|+++|.++|+..+++++++|++++.... .....+. .++.-++.++++..+....
T Consensus 3 ~~ILv~~D~s~~~~~~~a~~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 82 (144)
T PRK15005 3 RTILVPIDISDSELTQRVISHVEAEAKIDDAEVHFLTVIPSLPYYASLGLAYSAELPAMDDLKAEAKSQLEEIIKKFKLP 82 (144)
T ss_pred ccEEEecCCCchhHHHHHHHHHHHHHhccCCeEEEEEEEccCcccccccccccccchHHHHHHHHHHHHHHHHHHHhCCC
Confidence 468899887777 4799999999999999999999998731110 0000010 0111223444444332211
Q ss_pred cEEEEEEeecChhhHHHHHHhhh--cCCcEEEEecCCCCCcccccccCcCCCCCccchhhhhhhcCCCCcceEEEe
Q 036516 622 KIIFREEIVKDGIGTTQVIQAFA--ETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEFSVLVVQ 695 (709)
Q Consensus 622 ~v~y~e~~v~~g~~~~~~i~~~~--~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~SvLvvq 695 (709)
.+.+. ..+..|... +.|.+.+ .++|||++|++++ |+.+| =+|...+-+... .+|+||||.
T Consensus 83 ~~~~~-~~v~~G~p~-~~I~~~a~~~~~DLIV~Gs~~~-------~~~~~----llGS~a~~vl~~-a~cpVlvVr 144 (144)
T PRK15005 83 TDRVH-VHVEEGSPK-DRILELAKKIPADMIIIASHRP-------DITTY----LLGSNAAAVVRH-AECSVLVVR 144 (144)
T ss_pred CCceE-EEEeCCCHH-HHHHHHHHHcCCCEEEEeCCCC-------Cchhe----eecchHHHHHHh-CCCCEEEeC
Confidence 22222 333344322 3332232 4899999998732 22232 378888888775 667999984
No 46
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=97.87 E-value=7.1e-05 Score=70.13 Aligned_cols=128 Identities=16% Similarity=0.201 Sum_probs=74.8
Q ss_pred ceEEEEeeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCC-CC--CC--CCCchh---HHHHHHHHHhhhcCCCcE
Q 036516 552 LYHIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFITTDQNR-PS--TE--MPDDHE---LDNQAFDEFKDSMVGNKI 623 (709)
Q Consensus 552 ~~~V~~~f~Gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~~-~~--~~--~~~~~~---~d~~~l~~~~~~~~~~~v 623 (709)
.+||+++.-|.++++.|+++|..+|+.++++++++++..+.... .. .. ++.+++ .-.+.++++.... .+
T Consensus 3 ~~~ILvavD~S~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~ 79 (144)
T PRK15118 3 YKHILIAVDLSPESKVLVEKAVSMARPYNAKVSLIHVDVNYSDLYTGLIDVNLGDMQKRISEETHHALTELSTNA---GY 79 (144)
T ss_pred ceEEEEEccCChhHHHHHHHHHHHHHhhCCEEEEEEEccChhhhhhhhhhcchHHHHHHHHHHHHHHHHHHHHhC---CC
Confidence 35799999999999999999999999999999999985321100 00 00 001111 1112233333222 11
Q ss_pred EEEEEeecCh---hhHHHHHHhhhcCCcEEEEecCCCCCcccccccCcCCCCCccchhhhhhhcCCCCcceEEEeecC
Q 036516 624 IFREEIVKDG---IGTTQVIQAFAETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEFSVLVVQQQP 698 (709)
Q Consensus 624 ~y~e~~v~~g---~~~~~~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~SvLvvqq~~ 698 (709)
...+..+..| +++.+.+++ .++|||++|+|++ + |. .+|-..+-+... .+|+||||....
T Consensus 80 ~~~~~~~~~G~p~~~I~~~a~~--~~~DLIV~Gs~~~-------~---~~---~lgSva~~v~~~-a~~pVLvv~~~~ 141 (144)
T PRK15118 80 PITETLSGSGDLGQVLVDAIKK--YDMDLVVCGHHQD-------F---WS---KLMSSARQLINT-VHVDMLIVPLRD 141 (144)
T ss_pred CceEEEEEecCHHHHHHHHHHH--hCCCEEEEeCccc-------H---HH---HHHHHHHHHHhh-CCCCEEEecCCc
Confidence 1223333333 334444444 4899999999952 1 11 156666666553 556999998643
No 47
>PRK10116 universal stress protein UspC; Provisional
Probab=97.79 E-value=9.5e-05 Score=69.01 Aligned_cols=128 Identities=15% Similarity=0.208 Sum_probs=72.5
Q ss_pred ceEEEEeeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCC-CCCCCCC---CCc---hhHHHHHHHHHhhhcCCCcEE
Q 036516 552 LYHIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFITTDQ-NRPSTEM---PDD---HELDNQAFDEFKDSMVGNKII 624 (709)
Q Consensus 552 ~~~V~~~f~Gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~-~~~~~~~---~~~---~~~d~~~l~~~~~~~~~~~v~ 624 (709)
.++|+++.-+.++...|+++|.++|+..++++|++++.++.. ....... +.+ ++.-++++++...+. .+.
T Consensus 3 ~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~ 79 (142)
T PRK10116 3 YSNILVAVAVTPESQQLLAKAVSIARPVNGKISLITLASDPEMYNQFAAPMLEDLRSVMQEETQSFLDKLIQDA---DYP 79 (142)
T ss_pred CceEEEEccCCcchHHHHHHHHHHHHHhCCEEEEEEEccCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhc---CCC
Confidence 357999988899999999999999999999999999975211 0000000 000 111123344443322 111
Q ss_pred EEEEeecChhhHHHHHHhh-hcCCcEEEEecCCCCCcccccccCcCCCCCccchhhhhhhcCCCCcceEEEe
Q 036516 625 FREEIVKDGIGTTQVIQAF-AETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEFSVLVVQ 695 (709)
Q Consensus 625 y~e~~v~~g~~~~~~i~~~-~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~SvLvvq 695 (709)
.....+..|..-..+++.. ..++||+|+|+++.. +++.| +...+-++.. ..|+||||-
T Consensus 80 ~~~~~~~~G~~~~~I~~~a~~~~~DLiV~g~~~~~------~~~~~------~s~a~~v~~~-~~~pVLvv~ 138 (142)
T PRK10116 80 IEKTFIAYGELSEHILEVCRKHHFDLVICGNHNHS------FFSRA------SCSAKRVIAS-SEVDVLLVP 138 (142)
T ss_pred eEEEEEecCCHHHHHHHHHHHhCCCEEEEcCCcch------HHHHH------HHHHHHHHhc-CCCCEEEEe
Confidence 2233444443333333332 238999999998742 12222 2234555443 456999984
No 48
>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=97.77 E-value=0.00013 Score=80.76 Aligned_cols=317 Identities=12% Similarity=0.117 Sum_probs=186.5
Q ss_pred HHHHHhhhcChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHh--hhccCCchhhHHHHHHHHHHhhchHHHHHHHHHH
Q 036516 39 HAFVLGVQIDLGLVKHIRKRAVIIGITSTLLPLVFGLSSFRIVQ--RISHLDDETASSIAASVVVNSMTSLVVITGLLKE 116 (709)
Q Consensus 39 ~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~ip~~~g~~~~~~l~--~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~e 116 (709)
++|-+|.-|.-+.+..+....+..|+.|.+.-.+.-.+.-|.+. +.+..+ ......++.|...|...+..+..+.+|
T Consensus 109 IvlDAGYfMp~r~Ff~NlgtILlfAVvGTi~Na~~~g~sL~~i~~~glf~~~-~glld~LlFgSLIsAVDPVAVLaVFEE 187 (670)
T KOG1966|consen 109 IVLDAGYFMPNRAFFENLGTILLFAVVGTIWNAFTIGASLYAISLSGLFGMS-IGLLDILLFGSLISAVDPVAVLAVFEE 187 (670)
T ss_pred HHhcccccCccHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCC-chHHHHHHHHHHHHhcCchhhhhhhhh
Confidence 34567888888888888888888888888775443222222222 222212 234677888999999998888889999
Q ss_pred hccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC----ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 036516 117 LKMLNSELGRLAASITIVSHIFGWSASMILLSVRDSQDN----LTTIKPLYITLVVIVYYIIVIFLVRPLTMRIVSKNSE 192 (709)
Q Consensus 117 l~ll~s~~G~lals~a~v~D~~~~~ll~i~~~~~~~~~~----~~~~~~~~~~~~~i~~~~~~~~v~r~~~~~i~~~~~~ 192 (709)
.. .|.-+=-++.+.+++||.+.+++.-++.+...-++. .....-...+..+.+..++++.+...+.....|.+.+
T Consensus 188 ih-VNe~LfI~VFGESLlNDaVTVVLY~~f~sf~~ig~~n~~~~d~~~G~~sFfVVslGG~lvGivfafl~sl~tkft~~ 266 (670)
T KOG1966|consen 188 IH-VNEVLFIIVFGESLLNDAVTVVLYNMFISFVEIGSDNLTTIDYVLGVVSFFVVSLGGALVGIVFAFLASLVTKFTKH 266 (670)
T ss_pred hc-cccEEEeeeehhhhhcCceEEehHHHHHHHHHhcccceeEeeeecceeEEEEEecCchhHHHHHHHHHHHHHHhhcc
Confidence 88 466666778889999999999999777665543211 0000000011111111122222222223333343322
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHhcCCC-----CChhhHHHhhhhhhhHhhhhHHHHHHhhhcc
Q 036516 193 EESMNQNHFIITICIVLVTTILGTLVGQNSILTAFFFGLCLPDG-----PPLGTQLVQKLDFFTSGFLLPVFCAISGIRM 267 (709)
Q Consensus 193 ~~~~~e~~~~~vl~~~l~~~~~~~~~G~~~~lGaf~~Gl~ip~~-----~~~~~~l~~kl~~~~~~~flPlFF~~~G~~~ 267 (709)
++-...++++.+...++..+|.++++++++-.+.|+++... ......-++.+-...+..--++-|++.|..+
T Consensus 267 ---vrviePvfif~~pYlaYL~aEm~hlSgIlAii~CG~~m~~Yv~~Nis~~s~~tvky~~K~lss~sEt~IF~fLGvs~ 343 (670)
T KOG1966|consen 267 ---VRVLEPVFIFLLPYLAYLTAEMFHLSGILAIIFCGLCMKKYVEANISQKSATTVKYFMKMLSSLSETVIFMFLGVST 343 (670)
T ss_pred ---eeeecchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhccchhhheeehhhh
Confidence 23344568888899999999999999999999999999853 1112222333333345555677788888766
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHhHhhh------CCCHHHHHHHHHHhhhhhhHHHHHHHhhhccCcc-chhH
Q 036516 268 ELYLINEKSFIKIEFIILMSYLGKFTGVMVPSLFF------GMSFLKASCLALIMCCRGIAEIAVYCMWKDRKII-TNQI 340 (709)
Q Consensus 268 d~~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~------~~~~~~~~~lg~~m~~kG~~~l~~~~~~~~~~~i-~~~~ 340 (709)
-=. -...++.++.+-++.+.+-|.+++...+++. +++..|-+.++.+ +-||.+...+... .+...+ ..+.
T Consensus 344 v~~-~h~wd~~Fi~~T~~fc~~~R~lgv~~lt~~~N~fr~~k~~~~DQfimsyG-GLRGAiaF~LV~l-id~~~vp~K~~ 420 (670)
T KOG1966|consen 344 VSS-NHHWDFAFICLTLVFCLIYRAIGVVVLTWFLNKFRMVKLEFVDQFIMSYG-GLRGAIAFGLVVL-IDGAKVPAKNM 420 (670)
T ss_pred cCC-cceeehhhhhhHHHHHHHHHHHHhhhhhhhhhhhheeeccccceeeeecC-CcchhhheeEEEE-eccccCCcccc
Confidence 322 1111455555666667777999988877765 3667777665542 4566654433211 221122 2222
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHhhc
Q 036516 341 -----FAIMITNMVIITGISTTIVGYLY 363 (709)
Q Consensus 341 -----~~~lv~~~ll~t~i~~plv~~ly 363 (709)
..++.+.+.+-.+..-|+++++-
T Consensus 421 Fvttti~VIfFTVflQGiTIkplvk~L~ 448 (670)
T KOG1966|consen 421 FVTTTIAVIFFTVFLQGITIKPLVKFLK 448 (670)
T ss_pred eEeeeeEEEeeeeeecccchHHHHHHHc
Confidence 22333334444444678888865
No 49
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=97.77 E-value=0.00013 Score=66.39 Aligned_cols=120 Identities=18% Similarity=0.239 Sum_probs=73.9
Q ss_pred EEEEeeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCCCCCCCCchhHHHHHHHHHhhhcCCCcEEEEEEeecC-
Q 036516 554 HIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFITTDQNRPSTEMPDDHELDNQAFDEFKDSMVGNKIIFREEIVKD- 632 (709)
Q Consensus 554 ~V~~~f~Gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~v~y~e~~v~~- 632 (709)
||+++.-|++.+++|+++|.++|++.+++++++++.+++.. . . .+..++.+++++.......+.+. .+.+
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~-----~-~-~~~~~~~l~~~~~~~~~~~~~~~--~~~~~ 71 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADRLKAPWYVVYVETPRLN-----R-L-SEAERRRLAEALRLAEELGAEVV--TLPGD 71 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHHhCCCEEEEEEecCccc-----c-C-CHHHHHHHHHHHHHHHHcCCEEE--EEeCC
Confidence 47888889999999999999999999999999999874321 0 1 11123344444432211122221 2222
Q ss_pred --hhhHHHHHHhhhcCCcEEEEecCCCCCcccccccCcCCCCCccchhhhhhhcCCCCcceEEE
Q 036516 633 --GIGTTQVIQAFAETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEFSVLVV 694 (709)
Q Consensus 633 --g~~~~~~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~SvLvv 694 (709)
.+.+.+++++ .+.|++++|.++.. . |.. --+|-..+-+.-.--++.|||+
T Consensus 72 ~~~~~I~~~~~~--~~~dllviG~~~~~--~-------~~~-~~~Gs~~~~v~~~a~~~~v~v~ 123 (124)
T cd01987 72 DVAEAIVEFARE--HNVTQIVVGKSRRS--R-------WRE-LFRGSLVDRLLRRAGNIDVHIV 123 (124)
T ss_pred cHHHHHHHHHHH--cCCCEEEeCCCCCc--h-------HHH-HhcccHHHHHHHhCCCCeEEEe
Confidence 2334555544 37999999999742 1 221 1578878777765324478876
No 50
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=97.75 E-value=0.00011 Score=79.11 Aligned_cols=108 Identities=9% Similarity=0.053 Sum_probs=73.5
Q ss_pred ceeEEEeccCCChHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCccccccCccccccchhchhHHHHHHHHHHHh----
Q 036516 385 LRILVCIHKEQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLKPHHQQTKSEAASSTQLINAFTQFQRC---- 460 (709)
Q Consensus 385 ~riLv~v~~~~~~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~---- 460 (709)
-|||||+|.+++...+++-+..++...+...+++++|+++..... . .. +......+++++..++..+.
T Consensus 6 kkILVavDGSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~~~~~----~--~~--~~~~~~~eelle~~~~~~~~~l~~ 77 (357)
T PRK12652 6 NRLLVPVADSVTVRQTVAYAVESAEEAAETPTVHLVAAASGRAVD----P--EG--QDELAAAEELLERVEVWATEDLGD 77 (357)
T ss_pred CeEEEEeCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCcccc----c--ch--hHHHHHHHHHHHHHHHHHHHhhhc
Confidence 479999999999999999998888432135799999999843211 1 00 01123334455555544322
Q ss_pred cCcceEEEEEEEEc-----cCCChhHHHHHHHhhcCccEEEecCC
Q 036516 461 YYGHVVVQHFTTIA-----PYATMHDDVCTLALDKRVVIIIVPFH 500 (709)
Q Consensus 461 ~~~~v~v~~~~~vs-----~~~~~~~dI~~~A~e~~~dlII~g~h 500 (709)
...++++++.+... ...++++.|++.|+|+++|+||||-.
T Consensus 78 ~~~gV~ve~~vv~~~~~~~~~G~pae~Iv~~Aee~~aDLIVm~~~ 122 (357)
T PRK12652 78 DASSVTIETALLGTDEYLFGPGDYAEVLIAYAEEHGIDRVVLDPE 122 (357)
T ss_pred ccCCCceEEEEEeccccccCCCCHHHHHHHHHHHcCCCEEEECCC
Confidence 12468888766552 11489999999999999999999964
No 51
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=97.74 E-value=0.0003 Score=63.52 Aligned_cols=128 Identities=15% Similarity=0.202 Sum_probs=76.1
Q ss_pred EEEEeeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCCCCCCCCchhHHHHHHHHHhhhc--CCCcEEEEEEeec
Q 036516 554 HIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFITTDQNRPSTEMPDDHELDNQAFDEFKDSM--VGNKIIFREEIVK 631 (709)
Q Consensus 554 ~V~~~f~Gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~--~~~~v~y~e~~v~ 631 (709)
+|+++.-+++..+.++++|.++|+..+.+++++++.++....+......+....++.++++.... .+-.+.+.-..-.
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~~~~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARRLGAELVLLHVVDPPPSSAAELAELLEEEARALLEALREALAEAGVKVETVVLEGD 80 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCCCCcchhHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEecCC
Confidence 36778888899999999999999999999999999863321000000112233445666666542 1113322211111
Q ss_pred ChhhHHHHHHhhhcCCcEEEEecCCCCCcccccccCcCCCCCccchhhhhhhcCCCCcceEEE
Q 036516 632 DGIGTTQVIQAFAETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEFSVLVV 694 (709)
Q Consensus 632 ~g~~~~~~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~SvLvv 694 (709)
...++.+.+++ .++|++++|.++.. .|.+ --.|.+.+-|... ..++||+|
T Consensus 81 ~~~~i~~~~~~--~~~dlvvig~~~~~---------~~~~-~~~~~~~~~ll~~-~~~pvliv 130 (130)
T cd00293 81 PAEAILEAAEE--LGADLIVMGSRGRS---------GLRR-LLLGSVAERVLRH-APCPVLVV 130 (130)
T ss_pred CHHHHHHHHHH--cCCCEEEEcCCCCC---------ccce-eeeccHHHHHHhC-CCCCEEeC
Confidence 23345555554 37999999998642 2222 2467777777754 44566654
No 52
>PRK09982 universal stress protein UspD; Provisional
Probab=97.74 E-value=0.00019 Score=67.21 Aligned_cols=39 Identities=21% Similarity=0.291 Sum_probs=36.4
Q ss_pred ceEEEEeeccCcChHHHHHHHHHHhcCCCeEEEEEEeee
Q 036516 552 LYHIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFIT 590 (709)
Q Consensus 552 ~~~V~~~f~Gg~ddreAl~~a~rma~~~~~~ltvl~v~~ 590 (709)
.++|+++.-|+++.+.|+++|.++|+.++++++++|+++
T Consensus 3 ~k~ILvavD~S~~s~~al~~A~~lA~~~~a~l~llhV~~ 41 (142)
T PRK09982 3 YKHIGVAISGNEEDALLVNKALELARHNDAHLTLIHIDD 41 (142)
T ss_pred ceEEEEEecCCcchHHHHHHHHHHHHHhCCeEEEEEEcc
Confidence 357999999999999999999999999999999999986
No 53
>PRK15456 universal stress protein UspG; Provisional
Probab=97.67 E-value=0.00084 Score=62.72 Aligned_cols=128 Identities=13% Similarity=0.141 Sum_probs=75.0
Q ss_pred eEEEEeeccCc--ChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCCC---CC--CCCc---hhHHHHHHHHHhhhcCCCc
Q 036516 553 YHIVMLFIGGA--DDREALAYSRRMAEHPNTSLTVVWFITTDQNRPS---TE--MPDD---HELDNQAFDEFKDSMVGNK 622 (709)
Q Consensus 553 ~~V~~~f~Gg~--ddreAl~~a~rma~~~~~~ltvl~v~~~~~~~~~---~~--~~~~---~~~d~~~l~~~~~~~~~~~ 622 (709)
+||+++.-|++ .++.|+++|.++|+.. .+++++|+.++...... .. ++.+ ++.-++.++++..+.....
T Consensus 3 ~~ILv~vD~S~~~~s~~al~~A~~la~~~-~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 81 (142)
T PRK15456 3 KTIIMPVDVFEMELSDKAVRHAEFLAQDD-GVIHLLHVLPGSASLSLHRFAADVRRFEEHLQHEAEERLQTMVSHFTIDP 81 (142)
T ss_pred ccEEEeccCCchhHHHHHHHHHHHHHhcC-CeEEEEEEecCcccccccccccchhhHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 47889988774 7899999999999885 59999999873211000 00 0011 1222234455543321111
Q ss_pred EEEEEEeecChhhHHHHHHhhh--cCCcEEEEecCCCCCcccccccCcCCCCCccchhhhhhhcCCCCcceEEEe
Q 036516 623 IIFREEIVKDGIGTTQVIQAFA--ETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEFSVLVVQ 695 (709)
Q Consensus 623 v~y~e~~v~~g~~~~~~i~~~~--~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~SvLvvq 695 (709)
..+ +..+..|. ..+.|.+.+ .+.||+++|+|++ + + .+ .=+|-..+-++.. .+|+||||.
T Consensus 82 ~~v-~~~v~~G~-~~~~I~~~a~~~~~DLIVmG~~g~--~-~----~~----~llGS~a~~v~~~-a~~pVLvV~ 142 (142)
T PRK15456 82 SRI-KQHVRFGS-VRDEVNELAEELGADVVVIGSRNP--S-I----ST----HLLGSNASSVIRH-ANLPVLVVR 142 (142)
T ss_pred cce-EEEEcCCC-hHHHHHHHHhhcCCCEEEEcCCCC--C-c----cc----eecCccHHHHHHc-CCCCEEEeC
Confidence 222 23333442 233333322 4799999999863 2 1 11 2389999999876 667999984
No 54
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=97.16 E-value=0.025 Score=58.46 Aligned_cols=122 Identities=18% Similarity=0.245 Sum_probs=73.5
Q ss_pred CcEEEcccccccccccCccCCCCcHH----HHHHH-HHHH-HHHHHHHHhhhcChHHHHhhhhhHHHHHHHHHHHHHHHH
Q 036516 1 GGALMGPSLLREIPYLDGLFPMGSRY----VLRTF-AEFG-MILHAFVLGVQIDLGLVKHIRKRAVIIGITSTLLPLVFG 74 (709)
Q Consensus 1 aGiilGPs~Lg~~~~~~~~fp~~~~~----~l~~l-a~iG-li~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~ip~~~g 74 (709)
+|+.+=|.++|-. .+++||.--.. +-..+ +..- +..++|-.|-++|++...+..||...+-+.-++++.++|
T Consensus 12 GG~MiVPLllga~--inTf~P~~~~~~GgFTtalf~G~~~il~~~l~~~Ga~I~~k~~g~~l~kg~~l~~~K~~i~~~~g 89 (314)
T TIGR00793 12 GGMMLVPLFLGAL--CHTFAPGAGKYFGSFTNGLITGTVPILAVWFFCMGASIDLSATGTVLRKSGTLVVTKIAVAWVVA 89 (314)
T ss_pred CceeHHHHHHHHH--HHhcCCchhhhcCchhHHHHcCcHHHHHHHHHHhCCeeeecccchhhhhcceeeeHHHHHHHHHH
Confidence 4666777777764 34556643111 11111 1111 336788899999999998888888877777888888888
Q ss_pred HHHHHHHhhhccCCc-hhhHHHHHHHHHHhhchHHHHHHHHHHhccccChhH
Q 036516 75 LSSFRIVQRISHLDD-ETASSIAASVVVNSMTSLVVITGLLKELKMLNSELG 125 (709)
Q Consensus 75 ~~~~~~l~~~~~~~~-~~~~~~l~l~~~ls~Ts~~vv~~iL~el~ll~s~~G 125 (709)
.+++.+++...-..+ ....+.+.+-.+++.|--..=+.+..|++- ++|.|
T Consensus 90 ~~~~~~~g~~Gi~~g~~~GlS~LAiiaA~~nsNggLY~aL~~qyGd-~~D~g 140 (314)
T TIGR00793 90 AIASRIIPEDGVEVGFFAGLSTLALVAAMDMTNGGLYASIMQQYGT-KEEAG 140 (314)
T ss_pred HHHHHHcCcCCccccceeccHHHHHHHHHhCCcHHHHHHHHHHcCC-Hhhhh
Confidence 888877764320000 112445555566666665555566666662 33444
No 55
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=97.08 E-value=0.0049 Score=66.48 Aligned_cols=122 Identities=13% Similarity=0.167 Sum_probs=71.4
Q ss_pred ceEEEEeeccCcChHHHHHHHHHHhcCC--CeEEEEEEeeecCCCCCCCCCCCchhHHHHHHHHHhhhcC-----C-CcE
Q 036516 552 LYHIVMLFIGGADDREALAYSRRMAEHP--NTSLTVVWFITTDQNRPSTEMPDDHELDNQAFDEFKDSMV-----G-NKI 623 (709)
Q Consensus 552 ~~~V~~~f~Gg~ddreAl~~a~rma~~~--~~~ltvl~v~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~-----~-~~v 623 (709)
.+||+++.-|++..+.|+++|..+|+.+ ++++|++|+++...... ..+...+..++.+++.+.... . ..+
T Consensus 5 ykkILVavDGSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~~~~~~--~~~~~~~~~eelle~~~~~~~~~l~~~~~gV 82 (357)
T PRK12652 5 ANRLLVPVADSVTVRQTVAYAVESAEEAAETPTVHLVAAASGRAVDP--EGQDELAAAEELLERVEVWATEDLGDDASSV 82 (357)
T ss_pred cCeEEEEeCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCccccc--chhHHHHHHHHHHHHHHHHHHHhhhcccCCC
Confidence 5689999999999999999999999985 69999999987322111 111111222233333332210 0 123
Q ss_pred EEEEEeec---------C-hhhHHHHHHhhhcCCcEEEEecCCCCCcccccccCcCCCCCccchhhhhhhcCCC
Q 036516 624 IFREEIVK---------D-GIGTTQVIQAFAETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSND 687 (709)
Q Consensus 624 ~y~e~~v~---------~-g~~~~~~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~ 687 (709)
.+...++. + .+++++..++ +++|||+||..-...+. .|-|-+++=-|+..+.
T Consensus 83 ~ve~~vv~~~~~~~~~G~pae~Iv~~Aee--~~aDLIVm~~~~~~~~~----------~~~~~~~~~~~~~~~~ 144 (357)
T PRK12652 83 TIETALLGTDEYLFGPGDYAEVLIAYAEE--HGIDRVVLDPEYNPGGT----------APMLQPLERELARAGI 144 (357)
T ss_pred ceEEEEEeccccccCCCCHHHHHHHHHHH--cCCCEEEECCCCCCCCC----------CcccchHHHHHHhcCC
Confidence 34444432 1 3344455554 37999999998643321 2345555555555544
No 56
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=97.04 E-value=0.45 Score=50.18 Aligned_cols=150 Identities=16% Similarity=0.097 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcChHHHHhhhhh---HHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhhHHHHHHHHHH
Q 036516 26 YVLRTFAEFGMILHAFVLGVQIDLGLVKHIRKR---AVIIGITSTLLPLVFGLSSFRIVQRISHLDDETASSIAASVVVN 102 (709)
Q Consensus 26 ~~l~~la~iGli~~lF~~Gle~d~~~l~~~~~~---~~~i~~~~~~ip~~~g~~~~~~l~~~~~~~~~~~~~~l~l~~~l 102 (709)
..++..-.+.+.++||..|+.+..+.+++..|+ ......+++++--.+|++++..+. .+.+.....++++.+=
T Consensus 34 ~~~~~~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~~~~----l~~~l~~Gl~ll~~~P 109 (319)
T COG0385 34 GWLGSAIPIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAKLFP----LPPELAVGLLLLGCCP 109 (319)
T ss_pred hhhhHHHHHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHcC----CCHHHHHhHHheeeCC
Confidence 344445588899999999999999999865543 333334444444445666655553 2222233334444444
Q ss_pred hhchHHHHHHHHHHhccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CC---ccchhhHHHHHHHHHHHHHHHHH
Q 036516 103 SMTSLVVITGLLKELKMLNSELGRLAASITIVSHIFGWSASMILLSVRDSQ-DN---LTTIKPLYITLVVIVYYIIVIFL 178 (709)
Q Consensus 103 s~Ts~~vv~~iL~el~ll~s~~G~lals~a~v~D~~~~~ll~i~~~~~~~~-~~---~~~~~~~~~~~~~i~~~~~~~~v 178 (709)
+.|+. .+...+.. .+. -++++.+.++.+++.++.-+...+.-++ .+ +..++ .++..++.=.+...+
T Consensus 110 ggv~S-~~~t~lAk-----GnV-alsV~~tsvStll~~f~tPllv~l~~~~~v~~~~~~m~~---~i~~~vllP~~LG~~ 179 (319)
T COG0385 110 GGVAS-NAMTYLAK-----GNV-ALSVCSTSVSTLLGPFLTPLLVGLLAGGGVPVDVGGMFL---SILLQVLLPFVLGQL 179 (319)
T ss_pred CchhH-HHHHHHhc-----CcH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHH---HHHHHHHHHHHHHHH
Confidence 44444 33333333 222 5677778889999988875555544332 11 22333 444444444556667
Q ss_pred HHHHHHHHHhh
Q 036516 179 VRPLTMRIVSK 189 (709)
Q Consensus 179 ~r~~~~~i~~~ 189 (709)
.||......++
T Consensus 180 ~r~~~~~~~~~ 190 (319)
T COG0385 180 LRPLLPKWVER 190 (319)
T ss_pred HHHHHHHHHHH
Confidence 77777655555
No 57
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=96.73 E-value=1.3 Score=48.59 Aligned_cols=288 Identities=13% Similarity=0.069 Sum_probs=141.0
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHhhhcChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhc-cCCchhhHHHHHHHH
Q 036516 22 MGSRYVLRTFAEFGMILHAFVLGVQIDLGLVKHIRKRAVIIGITSTLLPLVFGLSSFRIVQRIS-HLDDETASSIAASVV 100 (709)
Q Consensus 22 ~~~~~~l~~la~iGli~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~ip~~~g~~~~~~l~~~~-~~~~~~~~~~l~l~~ 100 (709)
+...+..+.+.+..+=+-+++.=++.|++.++|.++|.+.. +..-.+..++|..+++++.+.. .++ .|.. +.
T Consensus 47 p~~s~~y~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l~~-F~~~~~g~viG~~va~~l~~~~l~~~--~wk~----ag 119 (378)
T PF05684_consen 47 PASSPVYDFVWTYLVPLAIPLLLLSADLRRILRLGGRLLLA-FLIGAVGTVIGAVVAFLLFGGFLGPE--GWKI----AG 119 (378)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHH-HHHHHHHHHHHHHHHHHHHhhcccch--HHHH----HH
Confidence 34567888888888888888888899999999999887643 3333445556666766665543 222 2222 22
Q ss_pred HHhhchHHHHHHHHHHhccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-ccchhhHHHHHHHHHHHHHHHHHH
Q 036516 101 VNSMTSLVVITGLLKELKMLNSELGRLAASITIVSHIFGWSASMILLSVRDSQDN-LTTIKPLYITLVVIVYYIIVIFLV 179 (709)
Q Consensus 101 ~ls~Ts~~vv~~iL~el~ll~s~~G~lals~a~v~D~~~~~ll~i~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~v~ 179 (709)
+++.|-..-..+...=...++.+ ..+.-+....|+++.-+.+.+...+...... ..+..+-..-...
T Consensus 120 ~l~gsyiGGs~N~~Av~~al~~~-~~~~~a~~aaDnv~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~----------- 187 (378)
T PF05684_consen 120 MLAGSYIGGSVNFVAVAEALGVS-DSLFAAALAADNVVMALWFAFLLALPPFARKFDRWTKADTSSIEA----------- 187 (378)
T ss_pred HHHhcccCchhHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhccCCCccccch-----------
Confidence 22222222212211111112222 2344444455556655555555544321000 0000000000000
Q ss_pred HHHHHHHHhhc--ccCCCCchhHHHHHHHHHHHHHHHHHHhchh-------------HhHHHHHHHHhcCCCCChhhHHH
Q 036516 180 RPLTMRIVSKN--SEEESMNQNHFIITICIVLVTTILGTLVGQN-------------SILTAFFFGLCLPDGPPLGTQLV 244 (709)
Q Consensus 180 r~~~~~i~~~~--~~~~~~~e~~~~~vl~~~l~~~~~~~~~G~~-------------~~lGaf~~Gl~ip~~~~~~~~l~ 244 (709)
.-....+.. ++.++.. ......+.+.+..+.++..++-. .++-....|++... +|..+.+
T Consensus 188 --~~~~~~~~~~~~~~~~~~-~~l~~~la~a~~v~~~s~~la~~l~~~~~~~~~~~~~il~~tt~~l~~~~-~~~~~~l- 262 (378)
T PF05684_consen 188 --LEEEIEAEEAEWARKPIS-QDLAFLLAVAFAVVALSHALAAWLPPLFAGISSSTWLILTVTTLGLATSF-PPFRKLL- 262 (378)
T ss_pred --hhhhhhhhhhccccCCcH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHhc-cchhhcC-
Confidence 000000000 0011111 12223333333333222222111 22333344444433 3444443
Q ss_pred hhhhhhhHhhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHhHhhhCCCHHHHHHHHHHhhhhhhHHH
Q 036516 245 QKLDFFTSGFLLPVFCAISGIRMELYLINEKSFIKIEFIILMSYLGKFTGVMVPSLFFGMSFLKASCLALIMCCRGIAEI 324 (709)
Q Consensus 245 ~kl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~l 324 (709)
.--+.+ ..+++=+||+.+|++.|+..+.+..+ .+++.++.+..-.+..++.+|++|.|..+...- -.=|.-|-...
T Consensus 263 ~g~~~l-g~~lly~ffa~IGa~a~i~~l~~ap~--~~l~~~i~l~iH~~l~l~~~kl~k~~l~~~~vA-S~AnIGGpaTA 338 (378)
T PF05684_consen 263 RGASEL-GTFLLYLFFAVIGASADISELLDAPS--LFLFGFIILAIHLLLMLILGKLFKIDLFELLVA-SNANIGGPATA 338 (378)
T ss_pred CchHHH-HHHHHHHHHHHHccccCHHHHHHhHH--HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH-hhcccCCcchH
Confidence 333444 56677789999999999988765322 223344445667788888999999999766544 44566666665
Q ss_pred HHHHhhhccCccc
Q 036516 325 AVYCMWKDRKIIT 337 (709)
Q Consensus 325 ~~~~~~~~~~~i~ 337 (709)
.....+++..+..
T Consensus 339 ~a~A~a~~~~Lv~ 351 (378)
T PF05684_consen 339 PAVAAAKGPSLVP 351 (378)
T ss_pred HHHHHhcCCccHH
Confidence 5555555544333
No 58
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=96.65 E-value=0.071 Score=56.81 Aligned_cols=46 Identities=15% Similarity=0.285 Sum_probs=37.4
Q ss_pred HHHHHHhhhcChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036516 38 LHAFVLGVQIDLGLVKHIRKRAVIIGITSTLLPLVFGLSSFRIVQR 83 (709)
Q Consensus 38 ~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~ip~~~g~~~~~~l~~ 83 (709)
.++|..|-.+|++...+..||...+.+.-+.+..+++..++.++..
T Consensus 55 ~~~~~~ga~i~~~~~~~~l~~g~~l~~~k~~~~~~~~~~~~~~~g~ 100 (326)
T PRK05274 55 VFLFCMGASINLRATGTVLKKGGTLLLTKFAVAALVGVIAGKFIGE 100 (326)
T ss_pred HHHHHcCCEEeccccchhhhhchhHHHHHHHHHHHHHHHhhhcchH
Confidence 6888999999999998888888888777777777777776666543
No 59
>PRK10490 sensor protein KdpD; Provisional
Probab=96.45 E-value=0.017 Score=70.64 Aligned_cols=123 Identities=10% Similarity=0.053 Sum_probs=86.4
Q ss_pred cceeEEEeccCCChHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCccccccCccccccchhchhHHHHHHHHHHHhcCc
Q 036516 384 SLRILVCIHKEQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLKPHHQQTKSEAASSTQLINAFTQFQRCYYG 463 (709)
Q Consensus 384 e~riLv~v~~~~~~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~ 463 (709)
..|||||++.+.+...+++-+..++.. .....+++|+.....+. ......+++.+.++ ++++.
T Consensus 250 ~eriLV~v~~~~~~~~lIr~~~rlA~~--~~a~~~~l~V~~~~~~~------------~~~~~~~~l~~~~~-lA~~l-- 312 (895)
T PRK10490 250 RDAILLCIGHNTGSEKLVRTAARLAAR--LGSVWHAVYVETPRLHR------------LPEKKRRAILSALR-LAQEL-- 312 (895)
T ss_pred CCeEEEEECCCcchHHHHHHHHHHHHh--cCCCEEEEEEecCCcCc------------CCHHHHHHHHHHHH-HHHHc--
Confidence 679999999999999999999988854 45789999986432111 11223345555554 54432
Q ss_pred ceEEEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCC-ccEEEEE
Q 036516 464 HVVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAP-CSVGILV 535 (709)
Q Consensus 464 ~v~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~ap-CsVgIlv 535 (709)
+-.+.. ..+ +++.+.|.+.|++++++.||||-+++.+. + .-+|+.+++++.+| -+|-|+-
T Consensus 313 Ga~~~~--~~~--~dva~~i~~~A~~~~vt~IViG~s~~~~~---~-----~~~s~~~~l~r~~~~idi~iv~ 373 (895)
T PRK10490 313 GAETAT--LSD--PAEEKAVLRYAREHNLGKIIIGRRASRRW---W-----RRESFADRLARLGPDLDLVIVA 373 (895)
T ss_pred CCEEEE--EeC--CCHHHHHHHHHHHhCCCEEEECCCCCCCC---c-----cCCCHHHHHHHhCCCCCEEEEe
Confidence 233332 223 68999999999999999999998765421 1 13589999999996 7877764
No 60
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=96.42 E-value=1.4 Score=47.12 Aligned_cols=113 Identities=16% Similarity=0.179 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHhhhcChHHHHhhhhhH---HHHHHHHHHHHHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHhhc
Q 036516 29 RTFAEFGMILHAFVLGVQIDLGLVKHIRKRA---VIIGITSTLLPLVFGLSSFRIVQRISHLDDETASSIAASVVVNSMT 105 (709)
Q Consensus 29 ~~la~iGli~~lF~~Gle~d~~~l~~~~~~~---~~i~~~~~~ip~~~g~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~T 105 (709)
+....+++..++|..|+.++.+++++..++. ...-...+++.-++++++...+....+ .+ ....+.+..++-.|
T Consensus 30 ~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~~~~l~~~~~~--~~-l~~Gl~~~~~lPtT 106 (313)
T PF13593_consen 30 EYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFGLSRLFPAFLP--PE-LALGLLILACLPTT 106 (313)
T ss_pred hhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhccCC--HH-HHHHHHHHhhCCch
Confidence 4677888888999999999999998765443 322233333333445555555543221 11 11122222222222
Q ss_pred -hHHHHHHHHHHhccccChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036516 106 -SLVVITGLLKELKMLNSELGRLAASITIVSHIFGWSASMILLSVR 150 (709)
Q Consensus 106 -s~~vv~~iL~el~ll~s~~G~lals~a~v~D~~~~~ll~i~~~~~ 150 (709)
+..|+.. . ..+.+. ..++..+.++.+++.++.=+...+.
T Consensus 107 v~S~v~~T---~--~AgGN~-a~Al~~~~~snllgv~ltP~ll~l~ 146 (313)
T PF13593_consen 107 VSSSVVLT---R--LAGGNV-ALALFNAVLSNLLGVFLTPLLLLLL 146 (313)
T ss_pred hhHHHHHH---H--HcCCCH-HHHHHHHHHHhhhhHhHHHHHHHHH
Confidence 3333322 1 222222 5677778888888888875544433
No 61
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=96.37 E-value=0.11 Score=54.40 Aligned_cols=130 Identities=14% Similarity=0.181 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHhchhHhHHHHHHHHhcCCCCChhh-HHHhhhhhhhHhhhhHHHHHHhhhccccccccchhhHHHHHHHH
Q 036516 207 IVLVTTILGTLVGQNSILTAFFFGLCLPDGPPLGT-QLVQKLDFFTSGFLLPVFCAISGIRMELYLINEKSFIKIEFIIL 285 (709)
Q Consensus 207 ~~l~~~~~~~~~G~~~~lGaf~~Gl~ip~~~~~~~-~l~~kl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~ii~ 285 (709)
.....+.+++.++++.++|-.++|+++.... ++- .-.+.++.+ ..+-+.++....|+++|++.+... +.....+..
T Consensus 3 ~a~~~~~l~~~l~lP~~v~~il~GillGp~~-lg~i~~~~~~~~l-~~igl~~llF~~Gl~~d~~~l~~~-~~~~~~~~~ 79 (273)
T TIGR00932 3 AAVLAVPLSRRLGIPSVLGYLLAGVLIGPSG-LGLISNVEGVNHL-AEFGVILLMFLIGLELDLERLWKL-RKAAFGVGV 79 (273)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhCccc-ccCCCChHHHHHH-HHHHHHHHHHHHHhCCCHHHHHHH-HHHHHHHHH
Confidence 3455678888999999999999999996421 110 011234444 456666777889999999887643 222222222
Q ss_pred HHHHHH-HHHHHHhHhhhCCCHHHHHHHHHHhhhhhhHHHHHHHhhhccCccchhHH
Q 036516 286 MSYLGK-FTGVMVPSLFFGMSFLKASCLALIMCCRGIAEIAVYCMWKDRKIITNQIF 341 (709)
Q Consensus 286 ~~~~~K-~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~l~~~~~~~~~~~i~~~~~ 341 (709)
..++.- ++.++..+++++.++.+++.+|..+++-.. -+++.+..|.+..+.+.-
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~ls~Ts~--~v~~~il~~~~~~~~~~g 134 (273)
T TIGR00932 80 LQVLVPGVLLGLLLGHLLGLALGAAVVIGIILALSST--AVVVQVLKERGLLKTPFG 134 (273)
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhHH--HHHHHHHHHcCcccChHH
Confidence 333333 333444567789999999999998886542 344555566666554433
No 62
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=96.25 E-value=0.13 Score=60.28 Aligned_cols=131 Identities=14% Similarity=0.136 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHHHHhchhHhHHHHHHHHhcCC-CCChhhHHHhhhhhhhHhhhhHHHHHHhhhccccccccchhhHH
Q 036516 201 FIITICIVLVTTILGTLVGQNSILTAFFFGLCLPD-GPPLGTQLVQKLDFFTSGFLLPVFCAISGIRMELYLINEKSFIK 279 (709)
Q Consensus 201 ~~~vl~~~l~~~~~~~~~G~~~~lGaf~~Gl~ip~-~~~~~~~l~~kl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~ 279 (709)
....++...++..++..+|+++++|=.++|+++.. +..+-.. .+.++.+ ..+-+.++.+.+|+++|+..+... ...
T Consensus 10 ~~~~l~~a~i~~~l~~rl~lp~vlgyilaGillGP~~lg~i~~-~~~i~~l-aelGvv~LlF~iGLEl~~~~l~~~-~~~ 86 (621)
T PRK03562 10 ALIYLGAAVLIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVTD-VESILHF-AEFGVVLMLFVIGLELDPQRLWKL-RRS 86 (621)
T ss_pred HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhCcccccCCCC-HHHHHHH-HHHHHHHHHHHHHhCcCHHHHHHH-HHH
Confidence 34555666777788889999999999999999953 2111111 1234444 566667777889999999877543 111
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhCCCHHHHHHHHHHhhhhhhHHHHHHHhhhccCcc
Q 036516 280 IEFIILMSYLGKFTGVMVPSLFFGMSFLKASCLALIMCCRGIAEIAVYCMWKDRKII 336 (709)
Q Consensus 280 ~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~l~~~~~~~~~~~i 336 (709)
+..+-...++.-.+..+..+++++.++..++.+|..+..-.. .+ ...+-.+.+.+
T Consensus 87 ~~~~g~~qv~~~~~~~~~~~~~~g~~~~~al~ig~~la~SSt-ai-v~~~L~e~~~l 141 (621)
T PRK03562 87 IFGGGALQMVACGGLLGLFCMLLGLRWQVALLIGLGLALSST-AI-AMQAMNERNLM 141 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH-HH-HHHHHHHhccc
Confidence 111111111112233334556788999999999987754433 22 23444444443
No 63
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=96.20 E-value=1.6 Score=47.75 Aligned_cols=283 Identities=14% Similarity=0.119 Sum_probs=155.6
Q ss_pred ccCCCCcHHHHHHHHHHHHHHHHHHH----h--hhcChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCchh
Q 036516 18 GLFPMGSRYVLRTFAEFGMILHAFVL----G--VQIDLGLVKHIRKRAVIIGITSTLLPLVFGLSSFRIVQRISHLDDET 91 (709)
Q Consensus 18 ~~fp~~~~~~l~~la~iGli~~lF~~----G--le~d~~~l~~~~~~~~~i~~~~~~ip~~~g~~~~~~l~~~~~~~~~~ 91 (709)
.++|++..+..+.+-+-+=.+.+|.+ | +.||.+.+.|...|-+...+.+.+.-++++.+++.+++....
T Consensus 76 ~~ip~~~~~~v~~fm~~~~Fl~ffIa~LI~GSILgm~RklLika~~r~~p~il~g~~~a~~~g~lvG~l~G~~~~----- 150 (414)
T PF03390_consen 76 GLIPESVVEAVTNFMKGSNFLYFFIAALIVGSILGMNRKLLIKAFARFIPPILGGVIGAFLLGGLVGMLFGYSFK----- 150 (414)
T ss_pred CCCCHHHHHHHHHHhccCChHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH-----
Confidence 45676665555555433222333433 3 489999999999999888888888888888888888865431
Q ss_pred hHHHHHHHHHH-----hhchHHHHHHHHHHhccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhccC------CC-----
Q 036516 92 ASSIAASVVVN-----SMTSLVVITGLLKELKMLNSELGRLAASITIVSHIFGWSASMILLSVRDSQ------DN----- 155 (709)
Q Consensus 92 ~~~~l~l~~~l-----s~Ts~~vv~~iL~el~ll~s~~G~lals~a~v~D~~~~~ll~i~~~~~~~~------~~----- 155 (709)
...+.+++-. ..-+.|...-.=+-++.-..+.=..++.+.++.++++++.-+++--+.+.. +.
T Consensus 151 -~~i~~i~lPIMgGG~GaGavPLS~~Ya~~~g~~~~~~~s~~ipa~~lgNi~AIi~aglL~~lg~~~P~ltGnG~L~~~~ 229 (414)
T PF03390_consen 151 -DAIFYIVLPIMGGGMGAGAVPLSQIYAEALGQDAEEYFSQLIPALTLGNIFAIIFAGLLNKLGKKKPKLTGNGQLLKGG 229 (414)
T ss_pred -HHHHHHHhhhcCCCccccHhHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCceEEeCC
Confidence 2223332211 112223222112223333444555567777888888887766665543211 00
Q ss_pred c----------cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHHHhchhHhHH
Q 036516 156 L----------TTIKPLYITLVVIVYYIIVIFLVRPLTMRIVSKNSEEESMNQNHFIITICIVLVTTILGTLVGQNSILT 225 (709)
Q Consensus 156 ~----------~~~~~~~~~~~~i~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~~~vl~~~l~~~~~~~~~G~~~~lG 225 (709)
. ...- +.-...-++..+.+|....++..++ .++ .+.+.++..++ ...+|+
T Consensus 230 ~~~~~~~~~~~~~~~--~~~~g~Gllla~~~y~~G~ll~~~i-------~ih-~~a~mIi~~~i-----~K~~~l----- 289 (414)
T PF03390_consen 230 DDEEEEAKKKEKPID--FSDMGAGLLLACSFYILGVLLSKLI-------GIH-AYAWMIILVAI-----VKAFGL----- 289 (414)
T ss_pred ccccccccccCCCCC--HHHHHHHHHHHHHHHHHHHHHHHhc-------CCc-HHHHHHHHHHH-----HHHhCc-----
Confidence 0 0000 1112222233344444444444433 111 22222221111 111111
Q ss_pred HHHHHHhcCCCCChhhHHHhhhhhhhHhhhhHHHHHHhhhc-cccccccch-hhHHHHHHHHHHHHHHHHHHHHhHhhhC
Q 036516 226 AFFFGLCLPDGPPLGTQLVQKLDFFTSGFLLPVFCAISGIR-MELYLINEK-SFIKIEFIILMSYLGKFTGVMVPSLFFG 303 (709)
Q Consensus 226 af~~Gl~ip~~~~~~~~l~~kl~~~~~~~flPlFF~~~G~~-~d~~~l~~~-~~~~~~~ii~~~~~~K~~~~~l~~~~~~ 303 (709)
+|+ .-++=.++...|+..-+.|-..+-+|+. +|+..+... ++. .+++++..+++-.+++++.+++.|
T Consensus 290 -------vP~---~~e~~a~~~~~f~~~~lt~~lLvgiGv~~~~l~~l~~a~t~~-~vv~~~~~Vl~~~~~a~~vG~l~g 358 (414)
T PF03390_consen 290 -------VPE---SLEEGAKQWYKFFSKNLTWPLLVGIGVAYTDLNDLIAAFTPQ-YVVIVLATVLGAVIGAFLVGKLVG 358 (414)
T ss_pred -------CCH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcHHHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 222 2333344566666666777777778888 998877654 443 345555666778889999999999
Q ss_pred CCHHH-HHHHHHHhhhh-hhHHHHHHHhhhccCccc
Q 036516 304 MSFLK-ASCLALIMCCR-GIAEIAVYCMWKDRKIIT 337 (709)
Q Consensus 304 ~~~~~-~~~lg~~m~~k-G~~~l~~~~~~~~~~~i~ 337 (709)
+-+-| ++.-|+.|+.+ |.-|+++.+.+.+.+++.
T Consensus 359 ~YPvEsAItaGLC~an~GGtGDvAVLsAa~RM~Lmp 394 (414)
T PF03390_consen 359 FYPVESAITAGLCMANMGGTGDVAVLSAANRMELMP 394 (414)
T ss_pred CChHHHHHHhhhcccCCCCCCcchheehhhhccccc
Confidence 65555 56667577666 456777777777766653
No 64
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=96.01 E-value=0.22 Score=55.07 Aligned_cols=143 Identities=13% Similarity=0.179 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHHHHHhchhHhHHHHHHHHhcCC-CC---ChhhHHHhhhhhhhHhhhhHHHHHHhhhccccccccchh
Q 036516 201 FIITICIVLVTTILGTLVGQNSILTAFFFGLCLPD-GP---PLGTQLVQKLDFFTSGFLLPVFCAISGIRMELYLINEKS 276 (709)
Q Consensus 201 ~~~vl~~~l~~~~~~~~~G~~~~lGaf~~Gl~ip~-~~---~~~~~l~~kl~~~~~~~flPlFF~~~G~~~d~~~l~~~~ 276 (709)
...++..+...+.+.+.+|+++++|-.++|+++.. +. ...++..+-+..++ .-++...+|+++|+..+....
T Consensus 11 ~~iiL~~a~i~~~l~~rl~lp~vlg~llaGiilGp~~~~~~~~~~~~i~~laelG----vi~LlF~~GLE~~~~~l~~~~ 86 (397)
T COG0475 11 LLILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLIIESSEIIELLAELG----VVFLLFLIGLEFDLERLKKVG 86 (397)
T ss_pred HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhcCcccccccCCchHHHHHHHHHh----HHHHHHHHHHCcCHHHHHHhc
Confidence 45566667777799999999999999999999986 21 12233333344442 334556789999998876541
Q ss_pred hHHHHHHHHHHHHHHHHHH--HHhHhhhCCCHHHHHHHHHHhhhhhhHHHHHHHhhhccCccchhHHHHHHHHHHH
Q 036516 277 FIKIEFIILMSYLGKFTGV--MVPSLFFGMSFLKASCLALIMCCRGIAEIAVYCMWKDRKIITNQIFAIMITNMVI 350 (709)
Q Consensus 277 ~~~~~~ii~~~~~~K~~~~--~l~~~~~~~~~~~~~~lg~~m~~kG~~~l~~~~~~~~~~~i~~~~~~~lv~~~ll 350 (709)
.........+.+..=++.+ +... +++.++++++.+|..+..-..- +++.+..|.|..+.+.-..++-..++
T Consensus 87 ~~~~~~~~~~~~~~~~~l~~~~~~~-~~g~~~~~al~lg~~l~~sS~~--i~~~iL~e~~~~~~~~g~~~l~~~i~ 159 (397)
T COG0475 87 RSVGLGVAQVGLTAPFLLGLLLLLG-ILGLSLIAALFLGAALALSSTA--IVLKILMELGLLKTREGQLILGALVF 159 (397)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHH-HhccChHHHHHHHHHHHHHHHH--HHHHHHHHhccccchHHHHHHHHHHH
Confidence 1102222222222222222 2223 5899999999999877655432 44555566666655554444333333
No 65
>TIGR00930 2a30 K-Cl cotransporter.
Probab=95.93 E-value=6.5 Score=48.49 Aligned_cols=132 Identities=9% Similarity=0.053 Sum_probs=80.3
Q ss_pred Cc-cceeEEEeccCCChHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCccccccCccccccchhchhHHHHHHHHHHHh
Q 036516 382 QN-SLRILVCIHKEQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLKPHHQQTKSEAASSTQLINAFTQFQRC 460 (709)
Q Consensus 382 ~~-e~riLv~v~~~~~~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~ 460 (709)
.+ .-++||.+.+|++.+.+++++..+.+.+ .-..+-|+++.+.+. ...+.++..++.+.+-+.
T Consensus 572 knwrPqiLvl~~~p~~~~~Ll~f~~~l~~~~---gl~i~~~v~~~~~~~-------------~~~~~~~~~~~~~~~~~~ 635 (953)
T TIGR00930 572 KNWRPQCLVLTGPPVCRPALLDFASQFTKGK---GLMICGSVIQGPRLE-------------CVKEAQAAEAKIQTWLEK 635 (953)
T ss_pred cccCCeEEEEeCCCcCcHHHHHHHHHhccCC---cEEEEEEEecCchhh-------------hHHHHHHHHHHHHHHHHH
Confidence 45 7899999999999999999999998332 345566888754211 111122223333333322
Q ss_pred cCcceEEEEEEEEccCCChhHHHHHHHhhc-----CccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEEE
Q 036516 461 YYGHVVVQHFTTIAPYATMHDDVCTLALDK-----RVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGILV 535 (709)
Q Consensus 461 ~~~~v~v~~~~~vs~~~~~~~dI~~~A~e~-----~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIlv 535 (709)
-+++.|..+-..+++.+++..+.+-. +.+.++|||...|+.+... . ...+-++.+.. -++...|.|+.
T Consensus 636 ----~~~~~f~~~~~~~~~~~g~~~l~q~~GlG~l~PNtv~lg~~~~w~~~~~~-~-~~~y~~~i~~a-~~~~~~v~i~r 708 (953)
T TIGR00930 636 ----NKVKAFYAVVVADDLREGVRHLIQASGLGRMKPNTLVMGYKKDWRQAEPR-A-WETYIGIIHDA-FDAHLAVVVVR 708 (953)
T ss_pred ----hCCCeEEEEecCCCHHHHHHHHHHhcCCCCCCCCEEEecCccchhhccch-h-HHHHHHHHHHH-HHcCCcEEEEc
Confidence 12333333333469999999988766 5799999999988754321 1 11244444443 35666666654
Q ss_pred e
Q 036516 536 H 536 (709)
Q Consensus 536 d 536 (709)
+
T Consensus 709 ~ 709 (953)
T TIGR00930 709 N 709 (953)
T ss_pred c
Confidence 3
No 66
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=95.88 E-value=3 Score=44.19 Aligned_cols=151 Identities=11% Similarity=0.067 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcChHHHHhhhhhHHHHHHHHHHHHHHHH----HHHHHHHhhhccCCchhh-HHHHHHH
Q 036516 25 RYVLRTFAEFGMILHAFVLGVQIDLGLVKHIRKRAVIIGITSTLLPLVFG----LSSFRIVQRISHLDDETA-SSIAASV 99 (709)
Q Consensus 25 ~~~l~~la~iGli~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~ip~~~g----~~~~~~l~~~~~~~~~~~-~~~l~l~ 99 (709)
...++.--.+|+++.|+=.=+++|++++++..|+.-.+. .+..+-++++ ++++.++.++ .... ...+.+|
T Consensus 46 ~~~~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~k~L~-lsL~~Nwii~P~lm~~la~~fl~~----~pey~~GlILlg 120 (342)
T COG0798 46 FGGVSIPIAIGLILMMYPPMLKIDFEELKNVFKDPKPLI-LSLFVNWIIGPLLMFALAWFFLPD----EPEYRAGLILLG 120 (342)
T ss_pred eCceehhHHHHHHHHHhHHHhcCCHHHHHHHHhcchHHH-HHHHHHHHHHHHHHHHHHHHHhCC----CHHHHHHHHHHH
Confidence 344556667889999998899999999998766532222 2233333333 3333333322 2211 2223333
Q ss_pred HHHhhchHHHHHHHHHHhccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-ccchhhHHHHHHHHHHHHHHHHH
Q 036516 100 VVNSMTSLVVITGLLKELKMLNSELGRLAASITIVSHIFGWSASMILLSVRDSQDN-LTTIKPLYITLVVIVYYIIVIFL 178 (709)
Q Consensus 100 ~~ls~Ts~~vv~~iL~el~ll~s~~G~lals~a~v~D~~~~~ll~i~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~v 178 (709)
.+=| +|-..+- -++.+.+. ..++..-.+||++.+++++......-+..+ ..+++ .++..+...+.+-++
T Consensus 121 lApC-~aMVivw-----~~La~Gd~-~~tlv~Va~n~l~qiv~y~~~~~~~l~v~~~~v~~~---~i~~Sv~lyl~iPli 190 (342)
T COG0798 121 LAPC-IAMVIVW-----SGLAKGDR-ELTLVLVAFNSLLQIVLYAPLGKFFLGVISISVPFW---TIAKSVLLYLGIPLI 190 (342)
T ss_pred hhhh-HHHHHHH-----HhhccCcH-hhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccHH---HHHHHHHHHHHHHHH
Confidence 3222 2222332 24444443 456666779999999998766554332222 23344 444444433344444
Q ss_pred HHHHHHHHHhhc
Q 036516 179 VRPLTMRIVSKN 190 (709)
Q Consensus 179 ~r~~~~~i~~~~ 190 (709)
...+.+++..|.
T Consensus 191 ~G~lTR~i~~k~ 202 (342)
T COG0798 191 AGVLTRYILIKK 202 (342)
T ss_pred HHHHHHHHHHHh
Confidence 444555555553
No 67
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=95.84 E-value=0.24 Score=57.49 Aligned_cols=133 Identities=9% Similarity=0.036 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHHHhchhHhHHHHHHHHhcCCCC-ChhhHHHhhhhhhhHhhhhHHHHHHhhhccccccccchhhHHHH
Q 036516 203 ITICIVLVTTILGTLVGQNSILTAFFFGLCLPDGP-PLGTQLVQKLDFFTSGFLLPVFCAISGIRMELYLINEKSFIKIE 281 (709)
Q Consensus 203 ~vl~~~l~~~~~~~~~G~~~~lGaf~~Gl~ip~~~-~~~~~l~~kl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~ 281 (709)
.++..+++++.++..+|++.++|=.++|+++.... ..-+. .+.++.+ ..+=+-++....|+++|++.+... .....
T Consensus 13 ~~l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~~~~-~~~~~~l-a~lGli~llF~~Gle~d~~~l~~~-~~~~~ 89 (558)
T PRK10669 13 GGLVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPGFVAD-TKLAPEL-AELGVILLMFGVGLHFSLKDLMAV-KSIAI 89 (558)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhCccccccccc-hHHHHHH-HHHHHHHHHHHhHhcCCHHHHHHH-hhHHH
Confidence 34556667778888899999999999999995421 11111 1223333 455555667778999999877532 11111
Q ss_pred HHHHHHHHHHHHHHHHhHhhhCCCHHHHHHHHHHhhhhhhHHHHHHHhhhccCccchhH
Q 036516 282 FIILMSYLGKFTGVMVPSLFFGMSFLKASCLALIMCCRGIAEIAVYCMWKDRKIITNQI 340 (709)
Q Consensus 282 ~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~l~~~~~~~~~~~i~~~~ 340 (709)
...+..++.=++.++..++.++.++.+++.+|..++.-.. .++.....+.|.++.+.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~lg~~ls~tS~--~vv~~~L~e~~~l~s~~ 146 (558)
T PRK10669 90 PGAIAQIAVATLLGMALSAVLGWSLMTGIVFGLCLSTAST--VVLLRALEERQLIDSQR 146 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH--HHHHHHHHhcCcccCcc
Confidence 1111111222233344456778999999999987777433 34556666777665533
No 68
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=95.79 E-value=0.58 Score=45.94 Aligned_cols=106 Identities=14% Similarity=0.226 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhhhcChHHHHhhhhhHHHH--HH-HHHHHHHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHhh-chHHH
Q 036516 34 FGMILHAFVLGVQIDLGLVKHIRKRAVII--GI-TSTLLPLVFGLSSFRIVQRISHLDDETASSIAASVVVNSM-TSLVV 109 (709)
Q Consensus 34 iGli~~lF~~Gle~d~~~l~~~~~~~~~i--~~-~~~~ip~~~g~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~-Ts~~v 109 (709)
+.+.+.||..|+++|++++++..|+...+ ++ ..+++.-.++++++..+.+.. .....|..+.. +.-+.
T Consensus 2 i~l~~~mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~~~~~~--------~~~~~Gl~l~~~~P~~~ 73 (187)
T PF01758_consen 2 ILLFLMMFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWLLLPLS--------PALALGLLLVAACPGGP 73 (187)
T ss_dssp -HHHHHHHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-HHTT----------HHHHHHHHHHHHS-B-T
T ss_pred hhhhHHHHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------HHHHHHHHHHhcCCcHH
Confidence 45778999999999999999877664432 22 233333334444442222221 11222222211 11122
Q ss_pred HHHHHHHhccccChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036516 110 ITGLLKELKMLNSELGRLAASITIVSHIFGWSASMILLSVR 150 (709)
Q Consensus 110 v~~iL~el~ll~s~~G~lals~a~v~D~~~~~ll~i~~~~~ 150 (709)
.+.+...+ .+.+. .++++...++.+.+.++.-+...+.
T Consensus 74 ~s~~~t~l--~~Gd~-~ls~~lt~istll~~~~~P~~~~l~ 111 (187)
T PF01758_consen 74 ASNVFTYL--AGGDV-ALSVSLTLISTLLAPFLMPLLLYLL 111 (187)
T ss_dssp HHHHHHHH--TT--H-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--hCCCc-ccccceeeHHHHHHHHHHHHHHHHH
Confidence 22333332 23333 3666777788887777765555444
No 69
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=95.76 E-value=0.15 Score=47.31 Aligned_cols=132 Identities=19% Similarity=0.204 Sum_probs=79.8
Q ss_pred eEEEEeec-cCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCCCCC----C-------CCchhHHHHHHHHHhhhcCC
Q 036516 553 YHIVMLFI-GGADDREALAYSRRMAEHPNTSLTVVWFITTDQNRPSTE----M-------PDDHELDNQAFDEFKDSMVG 620 (709)
Q Consensus 553 ~~V~~~f~-Gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~~~~~~----~-------~~~~~~d~~~l~~~~~~~~~ 620 (709)
.++++..- |.+..+.|++.+..+++..+..++++++.++........ . ...+...++.+++.+.....
T Consensus 6 ~~il~~~d~~s~~~~~a~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (154)
T COG0589 6 KKILVAVDVGSEAAEKALEEAVALAKRLGAPLILLVVIDPLEPTALVSVALADAPIPLSEEELEEEAEELLAEAKALAEA 85 (154)
T ss_pred ceEEEEeCCCCHHHHHHHHHHHHHHHhcCCeEEEEEEecccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777 899999999999999999999999888876221100000 0 00123345556655543322
Q ss_pred CcEEEEEEeecChh----hHHHHHHhhhcCCcEEEEecCCCCCcccccccCcCCCCCccchhhhhhhcCCCCcceEEEee
Q 036516 621 NKIIFREEIVKDGI----GTTQVIQAFAETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEFSVLVVQQ 696 (709)
Q Consensus 621 ~~v~y~e~~v~~g~----~~~~~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~SvLvvqq 696 (709)
..+...+..+..|. ++....++ +++||+++|.++. +.|.+ =-||-.-+-++.. .+++|||+..
T Consensus 86 ~~~~~~~~~~~~g~~~~~~i~~~a~~--~~adliV~G~~g~---------~~l~~-~llGsvs~~v~~~-~~~pVlvv~~ 152 (154)
T COG0589 86 AGVPVVETEVVEGSPSAEEILELAEE--EDADLIVVGSRGR---------SGLSR-LLLGSVAEKVLRH-APCPVLVVRS 152 (154)
T ss_pred cCCCeeEEEEecCCCcHHHHHHHHHH--hCCCEEEECCCCC---------ccccc-eeeehhHHHHHhc-CCCCEEEEcc
Confidence 22221233333332 23333333 3799999999742 23333 4588888888875 6679999975
Q ss_pred c
Q 036516 697 Q 697 (709)
Q Consensus 697 ~ 697 (709)
.
T Consensus 153 ~ 153 (154)
T COG0589 153 E 153 (154)
T ss_pred C
Confidence 3
No 70
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=95.75 E-value=3.5 Score=44.07 Aligned_cols=126 Identities=16% Similarity=0.033 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHHHhchh--HhHHHHHHHHhcCCCCChhhHHHhhhhhhhHhhhhHHHHHHhhhccccccccch--h
Q 036516 201 FIITICIVLVTTILGTLVGQN--SILTAFFFGLCLPDGPPLGTQLVQKLDFFTSGFLLPVFCAISGIRMELYLINEK--S 276 (709)
Q Consensus 201 ~~~vl~~~l~~~~~~~~~G~~--~~lGaf~~Gl~ip~~~~~~~~l~~kl~~~~~~~flPlFF~~~G~~~d~~~l~~~--~ 276 (709)
....+..++..+++.+.+++. ..+||++.+.++.-.....-.+-+.+ ..+-.-+.-.++|.+++...+... .
T Consensus 157 l~~l~~~~~~g~~l~~~l~iPa~~llGpml~~a~~~~~~~~~~~~P~~l----~~~aqv~iG~~iG~~f~~~~l~~~~~~ 232 (318)
T PF05145_consen 157 LALLALAALAGGLLARRLRIPAPWLLGPMLVSAILNLFGGPSFSLPPWL----VNAAQVLIGASIGSRFTRETLRELRRL 232 (318)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhCCCCCCCHHH----HHHHHHHHHHHHHccccHHHHHHHHHH
Confidence 344555666777888888874 58888888877764311111111111 222333455788999997766543 3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHhhhCCCHHHHHHHHHHhhhhhhHHHHHHHhhhcc
Q 036516 277 FIKIEFIILMSYLGKFTGVMVPSLFFGMSFLKASCLALIMCCRGIAEIAVYCMWKDR 333 (709)
Q Consensus 277 ~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~l~~~~~~~~~ 333 (709)
+...++..+..+..-.+.+++.+++.++|+.+++. .+.|-|.-|+.+.....+.
T Consensus 233 ~~~~l~~~~~~l~~~~~~a~~l~~~~~~~~~t~~L---a~aPGGl~eM~l~A~~l~~ 286 (318)
T PF05145_consen 233 LPPALLSTLLLLALCALFAWLLSRLTGIDFLTALL---ATAPGGLAEMALIALALGA 286 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH---HhCCccHHHHHHHHHHcCC
Confidence 33344455555566677788888999999987764 3679999998877665543
No 71
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=95.71 E-value=2.9 Score=45.73 Aligned_cols=92 Identities=13% Similarity=0.274 Sum_probs=55.3
Q ss_pred hhHhHHHHHHHHhcCCCC------ChhhHHHhhhhhhhHhhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHH
Q 036516 220 QNSILTAFFFGLCLPDGP------PLGTQLVQKLDFFTSGFLLPVFCAISGIRMELYLINEKSFIKIEFIILMSYLGKFT 293 (709)
Q Consensus 220 ~~~~lGaf~~Gl~ip~~~------~~~~~l~~kl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~ii~~~~~~K~~ 293 (709)
+....+|++.|+++.+.. ...++.++++ .++.+-+|.+..=+.++++.+.+....+.+++++-.++.=+.
T Consensus 247 lP~f~~ami~g~ivrn~~~~~~~~~id~~~i~~I----~~~sL~~fl~~almsl~l~~l~~~a~Plliil~~q~i~~~~f 322 (368)
T PF03616_consen 247 LPLFVGAMIVGIIVRNILDKTGKYKIDRKTIDRI----SGISLDLFLAMALMSLKLWVLADYALPLLIILAVQTILMVLF 322 (368)
T ss_pred CchHHHHHHHHHHHHHHHHHhCcccCCHHHHHHH----HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999998631 1223333344 555666666667777888877765333333334334444455
Q ss_pred HHHHhHhhhCCCHHHHHHHHHHh
Q 036516 294 GVMVPSLFFGMSFLKASCLALIM 316 (709)
Q Consensus 294 ~~~l~~~~~~~~~~~~~~lg~~m 316 (709)
..++..|.+|.++ |+..++...
T Consensus 323 ~~fv~fr~~gkdy-daavm~~G~ 344 (368)
T PF03616_consen 323 AYFVTFRVMGKDY-DAAVMSAGF 344 (368)
T ss_pred HHHHhhhhhCCCh-hHHHHhhhh
Confidence 6666778888886 665554443
No 72
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=95.70 E-value=0.63 Score=49.75 Aligned_cols=292 Identities=12% Similarity=0.075 Sum_probs=144.8
Q ss_pred cCCCCcHHHHHHHHHHHHHHHHHHH----h--hhcChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhh
Q 036516 19 LFPMGSRYVLRTFAEFGMILHAFVL----G--VQIDLGLVKHIRKRAVIIGITSTLLPLVFGLSSFRIVQRISHLDDETA 92 (709)
Q Consensus 19 ~fp~~~~~~l~~la~iGli~~lF~~----G--le~d~~~l~~~~~~~~~i~~~~~~ip~~~g~~~~~~l~~~~~~~~~~~ 92 (709)
++|++..+..+.+-+=+=.+.+|.+ | +.||.+.++|...|-+...+.+.+.-+++|.+++.+++....
T Consensus 8 ~~p~~~~~~~~~fm~~~~Fl~fyIa~LI~GSIL~m~Rk~Lik~~~r~~p~il~g~~~a~~~g~lvG~l~G~~~~------ 81 (347)
T TIGR00783 8 ILPQNVIDATSNFMKGSNFLYLYIACLIVGSILGMNRKLLLKALMRFIPPALIGMVLAVIVGILVGTLFGLGFD------ 81 (347)
T ss_pred CCCHHHHHHHHHHHccCChHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHh------
Confidence 4565555554444332222233333 3 489999999999998888888888888888888877765431
Q ss_pred HHHHHHHHHH-----hhchHHHHHHHHHHhccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC---ccchhhHHH
Q 036516 93 SSIAASVVVN-----SMTSLVVITGLLKELKMLNSELGRLAASITIVSHIFGWSASMILLSVRDSQDN---LTTIKPLYI 164 (709)
Q Consensus 93 ~~~l~l~~~l-----s~Ts~~vv~~iL~el~ll~s~~G~lals~a~v~D~~~~~ll~i~~~~~~~~~~---~~~~~~~~~ 164 (709)
...+++.+-. ..-+.|.-.-.=+-++.-..+.=..++.+.++.++++++.-+++--+...... ...+.
T Consensus 82 ~~~~~i~lPIm~GG~GaGavPLS~~Y~~~~g~~~~~~~s~~ip~~~igni~AIi~agll~~lG~~~p~ltG~G~L~---- 157 (347)
T TIGR00783 82 HSLMYIVMPIMAGGVGAGIVPLSIIYSAITGRSSEEIFSQLIPAVIIGNIFAIICAGLLSRIGKKRPKLNGHGELV---- 157 (347)
T ss_pred HhhheeeehhcCCCcccchhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCCceEe----
Confidence 1111111100 01111211100011222233333445555666666666665544333221000 00000
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHhhccc-CCCCchhHHHH--HHHHH-HHHHHHHHHh-chhHhHHHHHHHHhcCCCCC
Q 036516 165 TLVVIVYYIIVIFLVRPL-TMRIVSKNSE-EESMNQNHFII--TICIV-LVTTILGTLV-GQNSILTAFFFGLCLPDGPP 238 (709)
Q Consensus 165 ~~~~i~~~~~~~~v~r~~-~~~i~~~~~~-~~~~~e~~~~~--vl~~~-l~~~~~~~~~-G~~~~lGaf~~Gl~ip~~~~ 238 (709)
|.- -.-..+..++ ..+.+-..... .++.. +..+.+.+.+ ++|+..-..++|.++....-
T Consensus 158 ---------------~~~~~~~~~~~~~~~~~~~~~~~~g~Gl~~a~~~y~~g~l~~~~~~Ih~~v~mII~~vi~k~~gl 222 (347)
T TIGR00783 158 ---------------RSEKREDAEKAKEITEIKIDVKLMGSGVLFAVALFMAGGLLKSFPGIPAYAFMILIAAALKAFGL 222 (347)
T ss_pred ---------------ecCCcchhhhccccccCCCCHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCC
Confidence 000 0000000000 00111111111 11111 1111122222 56777777788887776544
Q ss_pred hhhHHHhhhhhh---hHhhhhHHHHHHhhhc-cccccccch-hhHHHHHHHHHHHHHHHHHHHHhHhhhCCCHHH-HHHH
Q 036516 239 LGTQLVQKLDFF---TSGFLLPVFCAISGIR-MELYLINEK-SFIKIEFIILMSYLGKFTGVMVPSLFFGMSFLK-ASCL 312 (709)
Q Consensus 239 ~~~~l~~kl~~~---~~~~flPlFF~~~G~~-~d~~~l~~~-~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~-~~~l 312 (709)
..+++.++...+ ...-+.+..++-+|+. +|++.+.+. ++. .+++++..+++=.+++++.+++.|+=+-| ++.-
T Consensus 223 lp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~~-~vviiv~~Vlg~ii~s~lvGKllG~YPiE~aIta 301 (347)
T TIGR00783 223 VPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSWQ-FVVICLSVVVAMILGGAFLGKLMGMYPVESAITA 301 (347)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhchh-HhhhHHHHHHHHHHHHHHHHHHhCCChHHHHHHH
Confidence 445555554443 3333444444556766 787766544 333 45566667778888999999999965545 5566
Q ss_pred HHHhhhh-hhHHHHHHHhhhccCcc
Q 036516 313 ALIMCCR-GIAEIAVYCMWKDRKII 336 (709)
Q Consensus 313 g~~m~~k-G~~~l~~~~~~~~~~~i 336 (709)
|+.|+.+ |.-|+++.+.+.+.+++
T Consensus 302 gLC~~~~GGtGDvavLsAa~RM~Lm 326 (347)
T TIGR00783 302 GLCNSGMGGTGDVAVLSASNRMNLI 326 (347)
T ss_pred hhhccCCCCCCceeeeehhhhcccc
Confidence 7677766 45567777777666665
No 73
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=95.70 E-value=0.33 Score=56.71 Aligned_cols=113 Identities=12% Similarity=0.082 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHHHhchhHhHHHHHHHHhcCCC-CChhhHHHhhhhhhhHhhhhHHHHHHhhhccccccccchhhHHH
Q 036516 202 IITICIVLVTTILGTLVGQNSILTAFFFGLCLPDG-PPLGTQLVQKLDFFTSGFLLPVFCAISGIRMELYLINEKSFIKI 280 (709)
Q Consensus 202 ~~vl~~~l~~~~~~~~~G~~~~lGaf~~Gl~ip~~-~~~~~~l~~kl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~ 280 (709)
...++...++..++..+|+++++|=.++|+++... ...-.. .+.++.+ ..+-+.++.+..|+++|+..+.... ...
T Consensus 11 ~~~l~~a~~~~~l~~rl~~p~ilg~ilaGillGP~~lg~i~~-~~~i~~l-aelGvv~LLF~iGLel~~~~l~~~~-~~~ 87 (601)
T PRK03659 11 VLFLFAAVVAVPLAQRLGIGAVLGYLLAGIAIGPWGLGFISD-VDEILHF-SELGVVFLMFIIGLELNPSKLWQLR-RSI 87 (601)
T ss_pred HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhccccccCCCc-HHHHHHH-HHHHHHHHHHHHHhcCCHHHHHHHH-HHH
Confidence 34455555667788889999999999999998542 111111 1234443 4556666777889999998775431 001
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhCCCHHHHHHHHHHhh
Q 036516 281 EFIILMSYLGKFTGVMVPSLFFGMSFLKASCLALIMC 317 (709)
Q Consensus 281 ~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~ 317 (709)
..+....++.-.+.....++++++++..++.+|..+.
T Consensus 88 ~~~g~~~v~~t~~~~~~~~~~~g~~~~~a~~~g~~la 124 (601)
T PRK03659 88 FGVGAAQVLLSAAVLAGLLMLTDFSWQAAVVGGIGLA 124 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 1111111111111122234456889999988886554
No 74
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=95.57 E-value=3.4 Score=44.46 Aligned_cols=101 Identities=11% Similarity=0.064 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhhhcChHHHHhhhhhHHHH--H-HHHHH-HHHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHhhchH-H
Q 036516 34 FGMILHAFVLGVQIDLGLVKHIRKRAVII--G-ITSTL-LPLVFGLSSFRIVQRISHLDDETASSIAASVVVNSMTSL-V 108 (709)
Q Consensus 34 iGli~~lF~~Gle~d~~~l~~~~~~~~~i--~-~~~~~-ip~~~g~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~-~ 108 (709)
+++.++||-.|++++++++++..|+...+ + ..+++ .|+ ++++++..+.+.. ..+.+|..+-...+ .
T Consensus 47 ~~l~~mmf~mgl~L~~~df~~~~~~pk~~~~~~~~qfvi~Pl-la~~l~~l~~~~~--------p~l~~GliLv~~~Pgg 117 (328)
T TIGR00832 47 IGLILMMYPPLAKVDYSALGDVFKDPKGLILSLFINWIIGPF-LMFLLAWLFLRDL--------FEYIAGLILLGLARCI 117 (328)
T ss_pred HHHHHHHHHhhhcCCHHHHHHHHcCchHHHHHHHHHHHHHHH-HHHHHHHHHcCCC--------HHHHHHHHHHHhcchH
Confidence 45668999999999999998766554322 2 22332 343 4555555442221 11333333322111 1
Q ss_pred HHHHHHHHhccccChhHHHHHHHHHHHHHHHHHHHHHH
Q 036516 109 VITGLLKELKMLNSELGRLAASITIVSHIFGWSASMIL 146 (709)
Q Consensus 109 vv~~iL~el~ll~s~~G~lals~a~v~D~~~~~ll~i~ 146 (709)
+.+.+.+.+ .+.+. .++++...++-+++.++.-..
T Consensus 118 ~~S~v~T~l--AkGnv-alsv~lt~~stLl~~~~~P~l 152 (328)
T TIGR00832 118 AMVFVWNQL--AKGDP-EYTLVLVAVNSLFQVFLYAPL 152 (328)
T ss_pred HHHHHHHHH--cCCCH-HHHHHHHHHHHHHHHHHHHHH
Confidence 223333333 34444 366666677777776666433
No 75
>PRK05326 potassium/proton antiporter; Reviewed
Probab=95.56 E-value=0.19 Score=58.30 Aligned_cols=129 Identities=16% Similarity=0.225 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHhchhHhHHHHHHHHhcCCCCChhhHH-HhhhhhhhHhhhhHHHHHHhhhccccccccchhhHHHH
Q 036516 203 ITICIVLVTTILGTLVGQNSILTAFFFGLCLPDGPPLGTQL-VQKLDFFTSGFLLPVFCAISGIRMELYLINEKSFIKIE 281 (709)
Q Consensus 203 ~vl~~~l~~~~~~~~~G~~~~lGaf~~Gl~ip~~~~~~~~l-~~kl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~ 281 (709)
+++++..+++.++..+|+..+++-.++|+++.....-.-.. ...+-.....+.+++.....|+++|+..+... +....
T Consensus 13 ~ll~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~~~~~~~~~~i~~l~L~~iLF~~Gl~~~~~~l~~~-~~~~~ 91 (562)
T PRK05326 13 LLLLLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQFDNYPLAYLVGNLALAVILFDGGLRTRWSSFRPA-LGPAL 91 (562)
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCcccCcHHHHHHHHHHHHHHHHHcCccCCCHHHHHHH-HHHHH
Confidence 34445556667778888889999999999887532110000 01122334678888889999999999887643 33333
Q ss_pred HHHHHHHHHHHH-HHHHhHhhhCCCHHHHHHHHHHhhhhhhHHHHHHHhhhccC
Q 036516 282 FIILMSYLGKFT-GVMVPSLFFGMSFLKASCLALIMCCRGIAEIAVYCMWKDRK 334 (709)
Q Consensus 282 ~ii~~~~~~K~~-~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~l~~~~~~~~~~ 334 (709)
.+..+.++.-.+ .++...+++++++.+++.+|.++++-... ++..+-.+.|
T Consensus 92 ~la~~gv~~t~~~~g~~~~~l~g~~~~~alllgai~s~Td~a--~v~~iL~~~~ 143 (562)
T PRK05326 92 SLATLGVLITAGLTGLFAHWLLGLDWLEGLLLGAIVGSTDAA--AVFSLLRGKG 143 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhhccCchH--HHHHHHhccC
Confidence 333333332222 23445567799999999999987776544 2334444555
No 76
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=95.44 E-value=0.38 Score=50.96 Aligned_cols=153 Identities=17% Similarity=0.140 Sum_probs=93.5
Q ss_pred HhchhHhHHHHHHHHhcCC-CCChhhHHHhhhhhhhHhhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHH
Q 036516 217 LVGQNSILTAFFFGLCLPD-GPPLGTQLVQKLDFFTSGFLLPVFCAISGIRMELYLINEKSFIKIEFIILMSYLGKFTGV 295 (709)
Q Consensus 217 ~~G~~~~lGaf~~Gl~ip~-~~~~~~~l~~kl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~ii~~~~~~K~~~~ 295 (709)
..++++.+=|.+.|+++.| .....+....-++. ....++++=-+..|.++++..+.+..+......++...+.=.++.
T Consensus 23 ~~~l~~~~~AillG~~i~n~~~~~~~~~~~Gi~~-~~k~~Lr~gIVLlG~~l~~~~i~~~G~~~~~~~~~~v~~~~~~~~ 101 (305)
T PF03601_consen 23 LPGLGALLIAILLGMLIGNLFFGLPARFKPGIKF-SSKKLLRLGIVLLGFRLSFSDILALGWKGLLIIIIVVILTFLLTY 101 (305)
T ss_pred ccCccHHHHHHHHHHHHhhhccCCcHHHHhHHHH-HHHHHHHHHHHHHCccccHHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence 3567778888899999997 44444555444443 356788888899999999988775544333333333333333444
Q ss_pred HHhHhhhCCCHHHHHHHHHHhhhhhhHHHHHHHhhhccCccchh-HH--HHHHHHHHHHHHHHHHHHHhhcCccccccch
Q 036516 296 MVPSLFFGMSFLKASCLALIMCCRGIAEIAVYCMWKDRKIITNQ-IF--AIMITNMVIITGISTTIVGYLYDPSRRYKLD 372 (709)
Q Consensus 296 ~l~~~~~~~~~~~~~~lg~~m~~kG~~~l~~~~~~~~~~~i~~~-~~--~~lv~~~ll~t~i~~plv~~ly~p~~~~~~~ 372 (709)
++..|.+|+|.+.+..+|...+.=|.-.++...-..+.+ +++ .+ ..+.+.-.+..++.|.+.+++.-+...+--+
T Consensus 102 ~lg~r~~~l~~~~~~Lia~GtsICG~SAi~A~a~~i~a~--~~~~a~ava~V~lfg~vam~~~P~l~~~l~l~~~~~G~w 179 (305)
T PF03601_consen 102 WLGRRLFGLDRKLAILIAAGTSICGASAIAATAPVIKAK--EEDVAYAVATVFLFGTVAMFLYPLLGHALGLSPQQFGAW 179 (305)
T ss_pred HHHHHHhCCCHHHHHHHHhhcccchHHHHHHHcccccCC--CCceeeeehHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 444499999999999999998888887766554444333 122 11 2222222333444566666655554444333
No 77
>COG2855 Predicted membrane protein [Function unknown]
Probab=95.16 E-value=0.18 Score=53.21 Aligned_cols=115 Identities=20% Similarity=0.183 Sum_probs=82.6
Q ss_pred HHHHHhchhHhHHHHHHHHhcCCCCChhhHHHhhhhhhhHhhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHH
Q 036516 213 ILGTLVGQNSILTAFFFGLCLPDGPPLGTQLVQKLDFFTSGFLLPVFCAISGIRMELYLINEKSFIKIEFIILMSYLGKF 292 (709)
Q Consensus 213 ~~~~~~G~~~~lGaf~~Gl~ip~~~~~~~~l~~kl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~ii~~~~~~K~ 292 (709)
...+..|+++..=|.+.|+++...++...+...-++. ....++++=.+..|++++++.+.+..+. .+.+.+..+..-+
T Consensus 30 ~~~~~~~l~al~lAIllGi~l~~l~~~~~~~~~GI~f-s~k~LLr~gIvLlG~~ltl~~i~~~G~~-~v~~~~~~l~~t~ 107 (334)
T COG2855 30 FFSIHLGLSALTLAILLGILLGILPQIPAQTSAGITF-SSKKLLRLGIVLLGFRLTLSDIADVGGS-GVLIIAITLSSTF 107 (334)
T ss_pred HHhhhcCchHHHHHHHHHHHHhccccchhhhccchhh-hHHHHHHHHHHHHcceeeHHHHHHcCcc-HHHHHHHHHHHHH
Confidence 3445566668888999999998665555555444544 3677888888999999999887754333 2334444455566
Q ss_pred HHHHHhHhhhCCCHHHHHHHHHHhhhhhhHHHHHHHh
Q 036516 293 TGVMVPSLFFGMSFLKASCLALIMCCRGIAEIAVYCM 329 (709)
Q Consensus 293 ~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~l~~~~~ 329 (709)
+.++..++++|+|++.+..+|..-+.=|.-.+....-
T Consensus 108 ~~~~~lg~~lgld~~~a~Lia~GssICGasAiaA~~p 144 (334)
T COG2855 108 LFAYFLGKLLGLDKKLALLIAAGSSICGASAIAATAP 144 (334)
T ss_pred HHHHHHHHHhCCCHHHHHHHHccchhhHHHHHHHhCC
Confidence 7777778899999999999999888888776655443
No 78
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=95.15 E-value=0.053 Score=45.73 Aligned_cols=49 Identities=18% Similarity=-0.009 Sum_probs=40.1
Q ss_pred ChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhH-HHHHHHhhcCCccEE
Q 036516 478 TMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIR-ALNRNVLHKAPCSVG 532 (709)
Q Consensus 478 ~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~-~~~~~Vl~~apCsVg 532 (709)
.+++.+.+.|++.++|.|++|.|+....+.. ..+ ++..++.++++|||.
T Consensus 35 ~~~~~~~~~a~~~~~~~Iv~G~~~~d~~~~~------~~~~~~~~~~~~~~~~~vl 84 (86)
T cd01984 35 AFVRILKRLAAEEGADVIILGHNADDVAGRR------LGASANVLVVIKGAGIPVL 84 (86)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCchhhhhhc------cCchhhhhhcccccCCcee
Confidence 7889999999999999999999887554332 234 678899999999974
No 79
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=95.04 E-value=1.1 Score=47.75 Aligned_cols=288 Identities=12% Similarity=0.095 Sum_probs=138.8
Q ss_pred ccCCCCcHHHHHHHHHHHHHHHHHHHhh------hcChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCchh
Q 036516 18 GLFPMGSRYVLRTFAEFGMILHAFVLGV------QIDLGLVKHIRKRAVIIGITSTLLPLVFGLSSFRIVQRISHLDDET 91 (709)
Q Consensus 18 ~~fp~~~~~~l~~la~iGli~~lF~~Gl------e~d~~~l~~~~~~~~~i~~~~~~ip~~~g~~~~~~l~~~~~~~~~~ 91 (709)
.++|++..+....+-.=+=.+.+|.+++ -||.+.+-|..++-+...+.+++.-...|.+++..++.... +...
T Consensus 93 ~llp~~~i~avt~fm~~snFL~fyIA~LI~GSILgmnRklLIk~~~~~i~~il~g~v~A~~~g~lVG~~~G~~~~-d~~m 171 (438)
T COG3493 93 NLLPSNVIKAVTNFMGKSNFLDFYIAALIVGSILGMNRKLLIKSLKRYIPPILAGMVGAAAVGILVGLLFGLSFQ-DTMM 171 (438)
T ss_pred ccCCHHHHHHHHHHhcCCChHHHHHHHHHHhhhhhccHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCChH-Heee
Confidence 3456655555555544444556676664 68888888888888877778888777888888877765431 0000
Q ss_pred hHHHHHHHHHHhhchHH--HHHHHHHHhccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC----ccc-------
Q 036516 92 ASSIAASVVVNSMTSLV--VITGLLKELKMLNSELGRLAASITIVSHIFGWSASMILLSVRDSQDN----LTT------- 158 (709)
Q Consensus 92 ~~~~l~l~~~ls~Ts~~--vv~~iL~el~ll~s~~G~lals~a~v~D~~~~~ll~i~~~~~~~~~~----~~~------- 158 (709)
....-.++--...-+.| .++. +-.+..+.+.=..++.+..+.++++++.-+++--+.....+ ...
T Consensus 172 ~~vlPIM~GG~GaGavPLS~iYs--~itg~s~~~~~s~lipal~igNvfAIi~aall~~iG~K~psltGnG~Lv~~~~~~ 249 (438)
T COG3493 172 YVVLPIMGGGMGAGAVPLSEIYS--SITGGSQEEYFSQLIPALTIGNVFAIICAALLNKIGKKKPSLTGNGELVRSKSKE 249 (438)
T ss_pred eEEeeeccCCCCCCcccHHHHHH--HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCccCCceEEeccccc
Confidence 00000001000011111 1111 11233334555566777778888887776655443221000 000
Q ss_pred ---------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHHHhchhHhHHHHHH
Q 036516 159 ---------IKPLYITLVVIVYYIIVIFLVRPLTMRIVSKNSEEESMNQNHFIITICIVLVTTILGTLVGQNSILTAFFF 229 (709)
Q Consensus 159 ---------~~~~~~~~~~i~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~~~vl~~~l~~~~~~~~~G~~~~lGaf~~ 229 (709)
..+=......-...+.+++....++..++. .| ..+.+.++ .+.+-...++
T Consensus 250 ~~~ee~~~~~k~d~~~~g~G~llA~~lf~~g~il~kf~~-~P------~~va~MIi-----l~a~lk~~nl--------- 308 (438)
T COG3493 250 ATEEELEKEGKLDLKLMGAGMLLACTLFMAGGILGKFIG-LP------GPVAFMII-----LVAILKAANL--------- 308 (438)
T ss_pred hhhhhhhhccCccHHHHHHHHHHHHHHHHHHHHHHHhhc-CC------chHHHHHH-----HHHHHHHhCc---------
Confidence 000001111111122223333333332221 12 11111111 1111111111
Q ss_pred HHhcCCCCChhhHHHhhhhhh-hHhhhhHHHHHHhhhc-cccccccch-hhHHHHHHHHHHHHHHHHHHHHhHhhhCCCH
Q 036516 230 GLCLPDGPPLGTQLVQKLDFF-TSGFLLPVFCAISGIR-MELYLINEK-SFIKIEFIILMSYLGKFTGVMVPSLFFGMSF 306 (709)
Q Consensus 230 Gl~ip~~~~~~~~l~~kl~~~-~~~~flPlFF~~~G~~-~d~~~l~~~-~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~ 306 (709)
+|+. -++=..++..| .+.+.-|+.+. +|.. +|+..+.+. +|.. +++.+...++-..+.++.+|+.|+-+
T Consensus 309 ---vp~~---i~~GA~~l~~F~sk~~t~~Lm~g-iGv~ytdl~ev~~alt~~~-vii~~~vVl~~i~~~~f~grl~~~YP 380 (438)
T COG3493 309 ---VPKE---IEEGAKQLSQFFSKNLTWPLMAG-IGVAYTDLNEVAAALTWQN-VIIALSVVLGAILGGAFVGRLMGFYP 380 (438)
T ss_pred ---CCHH---HHHHHHHHHHHHHHhhHHHHHHh-hhhccccHHHHHHHhchhH-HHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 2221 12222233333 34445555544 5655 787766544 4543 34444555677888999999999655
Q ss_pred HH-HHHHHHHhhhhh-hHHHHHHHhhhccCccc
Q 036516 307 LK-ASCLALIMCCRG-IAEIAVYCMWKDRKIIT 337 (709)
Q Consensus 307 ~~-~~~lg~~m~~kG-~~~l~~~~~~~~~~~i~ 337 (709)
-| ++.-|+.|+.+| .-|+.+.+.+-+.++++
T Consensus 381 VEaAI~aglC~a~~GGtGDvaVLsAa~RM~Lmp 413 (438)
T COG3493 381 VEAAITAGLCMANMGGTGDVAVLSAADRMELMP 413 (438)
T ss_pred hHHHHHHhHHhcCCCCCCchHHhhhcchhcccc
Confidence 55 555558888875 45677777776666654
No 80
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=95.01 E-value=4 Score=43.85 Aligned_cols=46 Identities=4% Similarity=0.130 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHhhhcChHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 036516 29 RTFAEFGMILHAFVLGVQIDLGLVKHIRKRAVIIGITSTLLPLVFGLSSF 78 (709)
Q Consensus 29 ~~la~iGli~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~ip~~~g~~~~ 78 (709)
+.+=++|++ +.|.+++++.+.+.|.+.+.+....+...+.++..++
T Consensus 65 k~lLr~gIV----LlG~~l~~~~i~~~G~~~l~~~~~~v~~~~~~~~~~g 110 (335)
T TIGR00698 65 PFLLRIGIT----LYGFRLTFPYIADVGPNEIVADTLILTSTFFLTVFLG 110 (335)
T ss_pred HHHHHHHHH----HHCccccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 355567766 4699999999999999887766665555555544443
No 81
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=94.87 E-value=2.4 Score=45.71 Aligned_cols=101 Identities=13% Similarity=0.206 Sum_probs=66.2
Q ss_pred HHHHHHHhc-----hhHhHHHHHHHHhcCCCCChh--hHHHhhhhhhhHhhhhHHHHHHhhhccccccccchhhHHHHHH
Q 036516 211 TTILGTLVG-----QNSILTAFFFGLCLPDGPPLG--TQLVQKLDFFTSGFLLPVFCAISGIRMELYLINEKSFIKIEFI 283 (709)
Q Consensus 211 ~~~~~~~~G-----~~~~lGaf~~Gl~ip~~~~~~--~~l~~kl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~i 283 (709)
..++.++++ +....++++.|.++.+.-+.. .++.++.-+.+.++-+-+|.+..=|.+.++.+.+......+++
T Consensus 234 G~~i~~~l~~~~~~lP~fv~~lfvgiIvrni~~~~~~~~v~~~~v~~ig~vsL~lflamALmSlkLweL~~l~lpl~viL 313 (404)
T COG0786 234 GKIINQLLKSLGLALPLFVMCLFVGVILRNILDLLKKYRVFRRAVDVIGNVSLSLFLAMALMSLKLWELADLALPLLVIL 313 (404)
T ss_pred HHHHHHHHhhccccccHHHHHHHHHHHHHhHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 335556655 466889999999998742211 1233333344467778888888888888888776545445555
Q ss_pred HHHHHHHHHHHHHHhHhhhCCCHHHHHH
Q 036516 284 ILMSYLGKFTGVMVPSLFFGMSFLKASC 311 (709)
Q Consensus 284 i~~~~~~K~~~~~l~~~~~~~~~~~~~~ 311 (709)
.+-..+--+.+.+...|.+|.+...+..
T Consensus 314 ~vQ~i~m~lfa~fvtfr~mG~~YdAaV~ 341 (404)
T COG0786 314 AVQTIVMALFAIFVTFRLMGKNYDAAVL 341 (404)
T ss_pred HHHHHHHHHHHHHHHHHHhCcchhHHHH
Confidence 5555555667777888888888766554
No 82
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=93.91 E-value=1.1 Score=53.13 Aligned_cols=71 Identities=7% Similarity=0.124 Sum_probs=49.6
Q ss_pred hHhhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHhHhh--hCCCHHHHHHHHHHhhhhhhH
Q 036516 251 TSGFLLPVFCAISGIRMELYLINEKSFIKIEFIILMSYLGKFTGVMVPSLF--FGMSFLKASCLALIMCCRGIA 322 (709)
Q Consensus 251 ~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~--~~~~~~~~~~lg~~m~~kG~~ 322 (709)
++.+.+++-.+..|++++...+... |..+..+++.+...-++++.+.+++ .+++|..++.+|.++.+-.-+
T Consensus 74 IteIvL~I~LFa~Gl~L~~~~Lrr~-wrsV~rLl~~~M~lT~livAL~a~~Li~GL~~~~ALLLGAILAPTDPV 146 (810)
T TIGR00844 74 ISRILLCLQVFAVSVELPRKYMLKH-WVSVTMLLVPVMTSGWLVIALFVWILVPGLNFPASLLMGACITATDPV 146 (810)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcCCcHH
Confidence 4667788888889999999877654 4444444444444444445555543 499999999999999987754
No 83
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=93.79 E-value=0.6 Score=45.94 Aligned_cols=107 Identities=19% Similarity=0.253 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHHhhhcCh-----HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHh
Q 036516 29 RTFAEFGMILHAFVLGVQIDL-----GLVKHIRKRAVIIGITSTLLPLVFGLSSFRIVQRISHLDDETASSIAASVVVNS 103 (709)
Q Consensus 29 ~~la~iGli~~lF~~Gle~d~-----~~l~~~~~~~~~i~~~~~~ip~~~g~~~~~~l~~~~~~~~~~~~~~l~l~~~ls 103 (709)
+...+..+.+++|.+|+++-- +.+++.+++++.+.+..++-.++.+.+++.++... ..+++.++.-+.
T Consensus 23 ~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlGSllgg~l~~~ll~~~-------~~~~lav~sG~G 95 (191)
T PF03956_consen 23 DKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILGSLLGGLLASLLLGLS-------LKESLAVASGFG 95 (191)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------HHHHHHHHccCc
Confidence 778899999999999998844 45677889999999999888888888888777322 245555554332
Q ss_pred hchHHHHHHHHHHhccccChhHHHHHHHHHHHHHHHHHHHHHH
Q 036516 104 MTSLVVITGLLKELKMLNSELGRLAASITIVSHIFGWSASMIL 146 (709)
Q Consensus 104 ~Ts~~vv~~iL~el~ll~s~~G~lals~a~v~D~~~~~ll~i~ 146 (709)
= +.....++.|+ .+.+.|.++.-+=++-+++++++.-++
T Consensus 96 w--YSlsg~~i~~~--~~~~~G~iafl~n~~RE~~a~~~~P~~ 134 (191)
T PF03956_consen 96 W--YSLSGVLITQL--YGPELGTIAFLSNLFREILAIILIPLL 134 (191)
T ss_pred H--HHhHHHHHHhh--hCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 11112233343 356788877777777777776665443
No 84
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=93.79 E-value=10 Score=39.88 Aligned_cols=104 Identities=18% Similarity=0.174 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHhhhcChHHHHhhhh--hHHHHHHH-HH-HHHHHHHHHHHHHHhhhccCCchhhHHHHHHHHHH-hhc
Q 036516 31 FAEFGMILHAFVLGVQIDLGLVKHIRK--RAVIIGIT-ST-LLPLVFGLSSFRIVQRISHLDDETASSIAASVVVN-SMT 105 (709)
Q Consensus 31 la~iGli~~lF~~Gle~d~~~l~~~~~--~~~~i~~~-~~-~ip~~~g~~~~~~l~~~~~~~~~~~~~~l~l~~~l-s~T 105 (709)
+.-..+.+.||..|+.++.+.+++..+ +...+++. .+ +.|.+. ++.+.+++.. .....|..+ +.+
T Consensus 9 ~~~~~l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla-~~l~~~~~l~---------~~~~~glvL~~~~ 78 (286)
T TIGR00841 9 ILLILLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTG-FLLAKVFKLP---------PELAVGVLIVGCC 78 (286)
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHH-HHHHHHhCCC---------HHHHHHHHheeeC
Confidence 333448889999999999999988766 34444433 33 455543 5555544211 112222222 222
Q ss_pred hHHHHHHHHHHhccccChhHHHHHHHHHHHHHHHHHHHHHHH
Q 036516 106 SLVVITGLLKELKMLNSELGRLAASITIVSHIFGWSASMILL 147 (709)
Q Consensus 106 s~~vv~~iL~el~ll~s~~G~lals~a~v~D~~~~~ll~i~~ 147 (709)
..++.+.++.+.- +. -..++.+...++-+++.+.+-+..
T Consensus 79 P~~~~s~v~t~~~--~g-n~~la~~~~~~stlls~vt~Pl~l 117 (286)
T TIGR00841 79 PGGTASNVFTYLL--KG-DMALSISMTTCSTLLALGMMPLLL 117 (286)
T ss_pred CCchHHHHHHHHh--CC-CHhhhhHHHHHHHHHHHHHHHHHH
Confidence 2222233333332 22 235566666666666666654433
No 85
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=93.57 E-value=2.1 Score=45.99 Aligned_cols=112 Identities=15% Similarity=0.133 Sum_probs=71.4
Q ss_pred hchhHhHHHHHHHHhcCCCC--ChhhHHHhhhhhhhHhhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHH-H
Q 036516 218 VGQNSILTAFFFGLCLPDGP--PLGTQLVQKLDFFTSGFLLPVFCAISGIRMELYLINEKSFIKIEFIILMSYLGKFT-G 294 (709)
Q Consensus 218 ~G~~~~lGaf~~Gl~ip~~~--~~~~~l~~kl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~ii~~~~~~K~~-~ 294 (709)
.|+++.+=|.+.|+++.+.. +..+....-+ .+....++-+=-+..|.++++..+....+... .+.+.....-++ +
T Consensus 29 ~~l~~~~~AillG~~l~n~~~~~~~~~~~~Gi-~f~~k~lLr~gIVLlG~~l~~~~i~~~G~~~l-~~~~~~v~~~~~~~ 106 (335)
T TIGR00698 29 PALSALFLAILLGMVAGNTIYPQRDEEKKRGV-LFAKPFLLRIGITLYGFRLTFPYIADVGPNEI-VADTLILTSTFFLT 106 (335)
T ss_pred CCCcHHHHHHHHHHHHhccccccchhhccchH-HHHHHHHHHHHHHHHCccccHHHHHHhhHHHH-HHHHHHHHHHHHHH
Confidence 36777777888999988732 1222222222 23455667777788999999988765433322 222223333334 4
Q ss_pred HHHhHhhhCCCHHHHHHHHHHhhhhhhHHHHHHHhhh
Q 036516 295 VMVPSLFFGMSFLKASCLALIMCCRGIAEIAVYCMWK 331 (709)
Q Consensus 295 ~~l~~~~~~~~~~~~~~lg~~m~~kG~~~l~~~~~~~ 331 (709)
.++..|.+|++++.+..+|...+.=|.-.++...-..
T Consensus 107 ~~~g~k~l~l~~~~~~Lia~GtsICGaSAi~A~a~~i 143 (335)
T TIGR00698 107 VFLGSSRLKLDKQMSILLGAGSSICGAAAVAAIEPVI 143 (335)
T ss_pred HHHHHHHhCCChhHHHHHHcchhHHHHHHHHHhcccc
Confidence 4555588999999999999988888877666544333
No 86
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=93.42 E-value=0.36 Score=56.35 Aligned_cols=124 Identities=15% Similarity=0.111 Sum_probs=82.2
Q ss_pred cceeEEEeccCCChHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCccccccCccccccchhchhHHHHHHHHHHHhcCc
Q 036516 384 SLRILVCIHKEQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLKPHHQQTKSEAASSTQLINAFTQFQRCYYG 463 (709)
Q Consensus 384 e~riLv~v~~~~~~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~ 463 (709)
..|||||++.......+++-+..++... ....+++|+.....+.. .....+++...++ ..++-.+
T Consensus 248 ~e~ilvcI~~~~~~e~liR~a~RlA~~~--~a~~~av~v~~~~~~~~------------~~~~~~~l~~~~~-Lae~lGa 312 (890)
T COG2205 248 RERILVCISGSPGSEKLIRRAARLASRL--HAKWTAVYVETPELHRL------------SEKEARRLHENLR-LAEELGA 312 (890)
T ss_pred cceEEEEECCCCchHHHHHHHHHHHHHh--CCCeEEEEEeccccccc------------cHHHHHHHHHHHH-HHHHhCC
Confidence 5899999999999999999988888443 46778888875332211 1122233333333 4332222
Q ss_pred ceEEEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCC-ccEEEE
Q 036516 464 HVVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAP-CSVGIL 534 (709)
Q Consensus 464 ~v~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~ap-CsVgIl 534 (709)
+..+..+ .++.+.|.+.|++.++.-||+|-+.+.+-.. ...+++.+++++++| .+|-|+
T Consensus 313 ----e~~~l~~--~dv~~~i~~ya~~~~~TkiViG~~~~~rw~~------~~~~~l~~~L~~~~~~idv~ii 372 (890)
T COG2205 313 ----EIVTLYG--GDVAKAIARYAREHNATKIVIGRSRRSRWRR------LFKGSLADRLAREAPGIDVHIV 372 (890)
T ss_pred ----eEEEEeC--CcHHHHHHHHHHHcCCeeEEeCCCcchHHHH------HhcccHHHHHHhcCCCceEEEe
Confidence 2333455 6999999999999999999999876532111 124788999999985 455443
No 87
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=93.34 E-value=1.9 Score=52.39 Aligned_cols=41 Identities=2% Similarity=0.054 Sum_probs=27.0
Q ss_pred CcceEEEEeeccCcChHHHHHHHHHH--hcCCCeEEEEEEeee
Q 036516 550 ELLYHIVMLFIGGADDREALAYSRRM--AEHPNTSLTVVWFIT 590 (709)
Q Consensus 550 ~~~~~V~~~f~Gg~ddreAl~~a~rm--a~~~~~~ltvl~v~~ 590 (709)
++..||++++-+-.|-+-.+.++... .+.....+.++|+++
T Consensus 456 ~~elriL~cv~~~~~v~~li~Lle~s~~t~~sp~~vy~lhLve 498 (832)
T PLN03159 456 DAELRMLVCVHTPRNVPTIINLLEASHPTKRSPICIYVLHLVE 498 (832)
T ss_pred CCceeEEEEeccCCcHHHHHHHHHhcCCCCCCCceEEEEEEEe
Confidence 44569999998444445556665554 234456888999986
No 88
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=93.23 E-value=1.9 Score=40.93 Aligned_cols=120 Identities=17% Similarity=0.096 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHhchh--HhHHHHHHHHhcCCCCChhhHHHhhhhhhhHhhhhHHHHHHhhhccccccccch--hhHHH
Q 036516 205 ICIVLVTTILGTLVGQN--SILTAFFFGLCLPDGPPLGTQLVQKLDFFTSGFLLPVFCAISGIRMELYLINEK--SFIKI 280 (709)
Q Consensus 205 l~~~l~~~~~~~~~G~~--~~lGaf~~Gl~ip~~~~~~~~l~~kl~~~~~~~flPlFF~~~G~~~d~~~l~~~--~~~~~ 280 (709)
+......+++.+.+|+. .++||++++.++.-.....-++-+. ...+-.-+.-..+|.+++...+.+. .+...
T Consensus 4 ~~~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~~~~~~~~~P~~----~~~~~qviiG~~iG~~f~~~~l~~~~~~~~~~ 79 (156)
T TIGR03082 4 LLVGLAGGLLASLLGLPAAWLLGPLLAGAVLSLAGGLEITLPPW----LLALAQVVIGILIGSRFTREVLAELKRLWPAA 79 (156)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhcCCccCCCCHH----HHHHHHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 34455566667777875 7889988888877432111111111 2233333555789999998776643 34334
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhCCCHHHHHHHHHHhhhhhhHHHHHHHhhh
Q 036516 281 EFIILMSYLGKFTGVMVPSLFFGMSFLKASCLALIMCCRGIAEIAVYCMWK 331 (709)
Q Consensus 281 ~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~l~~~~~~~ 331 (709)
....+..+..-++.+++..+..++|+.+++. | ..|-|.-|+......+
T Consensus 80 l~~~~~~l~~~~~~~~~l~~~~~~~~~ta~L-a--~~PGGl~~m~~~A~~~ 127 (156)
T TIGR03082 80 LLSTVLLLALSALLAWLLARLTGVDPLTAFL-A--TSPGGASEMAALAAEL 127 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH-H--hCCchHHHHHHHHHHh
Confidence 5555556666777888889999999998863 3 5688888887765533
No 89
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=93.05 E-value=1.1 Score=51.35 Aligned_cols=116 Identities=13% Similarity=0.142 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHhchhHhHHHHHHHHhcCCCCChhh-HHHhhhhhhhHhhhhHHHHHHhhhccccccccchhhHHHHHH
Q 036516 205 ICIVLVTTILGTLVGQNSILTAFFFGLCLPDGPPLGT-QLVQKLDFFTSGFLLPVFCAISGIRMELYLINEKSFIKIEFI 283 (709)
Q Consensus 205 l~~~l~~~~~~~~~G~~~~lGaf~~Gl~ip~~~~~~~-~l~~kl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~i 283 (709)
++.+.+...+++.+++.+.++-+++|+++...+.... .+.. .....+++|......|+++|...+... +..+..+
T Consensus 7 ~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~~~~~~~~---~~~~~~~Lp~lLF~~g~~~~~~~l~~~-~~~i~~l 82 (525)
T TIGR00831 7 VMLATAVAVTVKFIRLPYPIALILAGLLLGLAGLLPEVPLDR---EIVLFLFLPPLLFEAAMNTDLRELREN-FRPIALI 82 (525)
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHHhccccCCCCCCH---HHHHHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHH
Confidence 3334444555666677777777777777653211100 0111 122457889999999999999887654 3223333
Q ss_pred HHHHHHHH-HHHHHHhHhhhCCCHHHHHHHHHHhhhhhhHHH
Q 036516 284 ILMSYLGK-FTGVMVPSLFFGMSFLKASCLALIMCCRGIAEI 324 (709)
Q Consensus 284 i~~~~~~K-~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~l 324 (709)
.+...+.- .+.++...+..++|+..++.+|.++++..-+..
T Consensus 83 a~~~vlit~~~v~~~~~~~~~l~~~~alllGails~TDpvav 124 (525)
T TIGR00831 83 AFLLVVVTTVVVGFSLNWILGIPLALALILGAVLSPTDAVAV 124 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCCHHHH
Confidence 33332222 223333334678999999999999998877653
No 90
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=91.93 E-value=2.3 Score=46.46 Aligned_cols=115 Identities=14% Similarity=0.119 Sum_probs=62.3
Q ss_pred HhhhhHHHHHHhhhccccccccch--hhHHHHHHHHHHHHHHHHHHHHhHhhhCCCHHHHHHHHHHhhhhhhHHH-HHHH
Q 036516 252 SGFLLPVFCAISGIRMELYLINEK--SFIKIEFIILMSYLGKFTGVMVPSLFFGMSFLKASCLALIMCCRGIAEI-AVYC 328 (709)
Q Consensus 252 ~~~flPlFF~~~G~~~d~~~l~~~--~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~l-~~~~ 328 (709)
.++|+-.||+.+|+..++..+.+. .......+.....+...+.....+..++.++.-.+..|-.--..|+-.. +...
T Consensus 66 ~~~lm~~fF~~igL~~~~~~lkkgg~~~~~~~~~~~~~~~~Q~~vG~~la~l~gl~p~~Gll~Gsi~f~GGhGTAaa~g~ 145 (368)
T PF03616_consen 66 QDFLMIIFFTTIGLGASLKLLKKGGKAVLIFLLIAIILAFLQNIVGLGLAKLLGLDPLFGLLAGSIGFTGGHGTAAAFGP 145 (368)
T ss_pred HHHHHHHHHHHHhhccchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHhccccccCCccHHHHHHH
Confidence 456777899999999998876543 1221222222334455555555667778887766554421112333332 3334
Q ss_pred hhhcc-CccchhHHHHH--HHHHHHHHHHHHHHHHhhcCcc
Q 036516 329 MWKDR-KIITNQIFAIM--ITNMVIITGISTTIVGYLYDPS 366 (709)
Q Consensus 329 ~~~~~-~~i~~~~~~~l--v~~~ll~t~i~~plv~~ly~p~ 366 (709)
...+. |+-+.....+- .+-.+....+..|+.+++.|+.
T Consensus 146 ~fe~~~G~~~a~~vg~a~AT~Glv~G~liGgpi~~~lirk~ 186 (368)
T PF03616_consen 146 TFEELYGWEGATSVGMAAATFGLVVGGLIGGPIANWLIRKG 186 (368)
T ss_pred HHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 44444 55444333322 2222334566789998877543
No 91
>PRK10490 sensor protein KdpD; Provisional
Probab=91.06 E-value=0.78 Score=56.27 Aligned_cols=124 Identities=10% Similarity=0.180 Sum_probs=73.6
Q ss_pred cceEEEEeeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCCCCCCCCchhHHHHHHHHHhhhcCCCcEEEEEEee
Q 036516 551 LLYHIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFITTDQNRPSTEMPDDHELDNQAFDEFKDSMVGNKIIFREEIV 630 (709)
Q Consensus 551 ~~~~V~~~f~Gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~v~y~e~~v 630 (709)
...||++..-|+|+.+..++.|+|||+..++.+++++|.+++... ....+++.-.+.+ ++..+...+.+......+
T Consensus 249 ~~eriLV~v~~~~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~~---~~~~~~~~l~~~~-~lA~~lGa~~~~~~~~dv 324 (895)
T PRK10490 249 TRDAILLCIGHNTGSEKLVRTAARLAARLGSVWHAVYVETPRLHR---LPEKKRRAILSAL-RLAQELGAETATLSDPAE 324 (895)
T ss_pred cCCeEEEEECCCcchHHHHHHHHHHHHhcCCCEEEEEEecCCcCc---CCHHHHHHHHHHH-HHHHHcCCEEEEEeCCCH
Confidence 346899999999999999999999999999999999998642210 0111121111222 233333222111111111
Q ss_pred cChhhHHHHHHhhhcCCcEEEEecCCCCCcccccccCcCCCCCccchhhhhhhcCCCCcceEEE
Q 036516 631 KDGIGTTQVIQAFAETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEFSVLVV 694 (709)
Q Consensus 631 ~~g~~~~~~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~SvLvv 694 (709)
.+.+++++++. +.+.|++|++++. -| + --|-+-|-|....-+.-|.||
T Consensus 325 --a~~i~~~A~~~--~vt~IViG~s~~~---------~~--~-~~~s~~~~l~r~~~~idi~iv 372 (895)
T PRK10490 325 --EKAVLRYAREH--NLGKIIIGRRASR---------RW--W-RRESFADRLARLGPDLDLVIV 372 (895)
T ss_pred --HHHHHHHHHHh--CCCEEEECCCCCC---------CC--c-cCCCHHHHHHHhCCCCCEEEE
Confidence 12355555544 7899999998753 25 2 135677777754222267777
No 92
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=90.92 E-value=26 Score=37.69 Aligned_cols=155 Identities=15% Similarity=0.182 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHHHHHhchh--HhHHHHHHHHhcCCCCChhhHHHhhhhhhhHhhhhHHHHHHhhhccccccccch--h
Q 036516 201 FIITICIVLVTTILGTLVGQN--SILTAFFFGLCLPDGPPLGTQLVQKLDFFTSGFLLPVFCAISGIRMELYLINEK--S 276 (709)
Q Consensus 201 ~~~vl~~~l~~~~~~~~~G~~--~~lGaf~~Gl~ip~~~~~~~~l~~kl~~~~~~~flPlFF~~~G~~~d~~~l~~~--~ 276 (709)
+.+.+...++.+.+...+++. ..+|+++.|..+.-+....-++ -.....+-.-+.-..+|.++|-..+... .
T Consensus 190 ~~~l~~~~~~~g~l~~~lr~Pa~~ll~~l~l~a~v~~~~~~~~~l----P~wl~~va~~~iG~~IG~~f~~~~l~~~~r~ 265 (352)
T COG3180 190 LLLLILAALLGGLLGKLLRFPAPTLLGPLLLGAIVHFGGGITIQL----PAWLLAVAQALIGALIGSRFDRSILREAKRL 265 (352)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhcccceeeeC----CHHHHHHHHHHHHHHHcccccHHHHHHhHhh
Confidence 344445555556666666664 4788888888887653111111 1111222223445678888886554422 2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHhhhCCCHHHHHHHHHHhhhhhhHHHHHHHhhhccCccchhHHHHH-HHHHHHHHHHH
Q 036516 277 FIKIEFIILMSYLGKFTGVMVPSLFFGMSFLKASCLALIMCCRGIAEIAVYCMWKDRKIITNQIFAIM-ITNMVIITGIS 355 (709)
Q Consensus 277 ~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~l~~~~~~~~~~~i~~~~~~~l-v~~~ll~t~i~ 355 (709)
.....+.++..++.-...+++.+++.+.++.+++. ..+|-|.-++.....+.+. |...-..+ ++=.++...+.
T Consensus 266 ~~~~~v~ii~l~~~~~~~a~ll~~~~~i~~~ta~L---a~sPGGl~~ma~~A~~l~a---d~a~V~a~q~lRll~il~i~ 339 (352)
T COG3180 266 LPAILVSIIALMAIAAGMAGLLSWLTGIDLNTAYL---ATSPGGLDTMAAIAAALGA---DPAFVMALQVLRLLFILLLG 339 (352)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH---HcCCCcHHHHHHHHHHcCC---ChHHHHHHHHHHHHHHHHHH
Confidence 22233444444555556677778888999987754 3678998888776666542 22111111 11122223444
Q ss_pred HHHHHhhcCc
Q 036516 356 TTIVGYLYDP 365 (709)
Q Consensus 356 ~plv~~ly~p 365 (709)
|++.|++.|.
T Consensus 340 p~l~r~l~~~ 349 (352)
T COG3180 340 PALARFLSKR 349 (352)
T ss_pred HHHHHHHHHH
Confidence 7777775543
No 93
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=90.70 E-value=2.5 Score=44.99 Aligned_cols=116 Identities=11% Similarity=0.142 Sum_probs=72.3
Q ss_pred hhhHhhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHhHhhhCCCHHHHHHHHHHhhhhhhHHHHHHH
Q 036516 249 FFTSGFLLPVFCAISGIRMELYLINEKSFIKIEFIILMSYLGKFTGVMVPSLFFGMSFLKASCLALIMCCRGIAEIAVYC 328 (709)
Q Consensus 249 ~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~l~~~~ 328 (709)
.+.++++=|+-|.-+|..+|++-+....+...+ .-..+=+| +..+++.+..+|++.+|+-.+|.+=..-|-..+.+.+
T Consensus 101 gi~~gl~P~LIFlGIGAMtDFgpllanP~~~ll-~gaaAQ~G-iF~t~~~A~~lGF~~~eAAsIgIIGgADGPTaIf~s~ 178 (399)
T TIGR03136 101 TFSNSLVACILFFGIGAMSDISFILARPWASIT-VALFAEMG-TFATLVIGYYCGLTPGEAAAVGTIGGADGPMVLFASL 178 (399)
T ss_pred HHhcccHHHHHHHhccHHhcchHHHhChHHHHH-HHHHHHhh-HHHHHHHHHHcCCCHHHhhHHhhcccCCccHHHHHHH
Confidence 345788889999999999999876543222111 01122222 2344555667799999999999988888888877665
Q ss_pred hhhccCccchhHHHHHHHHHHHHHHHHHHHHHhhcCcccc
Q 036516 329 MWKDRKIITNQIFAIMITNMVIITGISTTIVGYLYDPSRR 368 (709)
Q Consensus 329 ~~~~~~~i~~~~~~~lv~~~ll~t~i~~plv~~ly~p~~~ 368 (709)
.-. -+++.+-.-.+-.-|+++ =.+-||++|.+-.+++|
T Consensus 179 kLA-p~Llg~IaVAAYsYMaLV-PiiqPpimklLttkkER 216 (399)
T TIGR03136 179 ILA-KDLFVPISIIAYLYLSLT-YAGYPYLIKLLVPKKYR 216 (399)
T ss_pred hhh-hHhHHHHHHHHHHHHHHH-hcccchHHHhhcCHHHH
Confidence 432 223333222233334444 66689999987744433
No 94
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=90.31 E-value=3.6 Score=39.64 Aligned_cols=85 Identities=18% Similarity=0.270 Sum_probs=59.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhhcChHHH---HhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhhHHHHHHH-
Q 036516 24 SRYVLRTFAEFGMILHAFVLGVQIDLGLV---KHIRKRAVIIGITSTLLPLVFGLSSFRIVQRISHLDDETASSIAASV- 99 (709)
Q Consensus 24 ~~~~l~~la~iGli~~lF~~Gle~d~~~l---~~~~~~~~~i~~~~~~ip~~~g~~~~~~l~~~~~~~~~~~~~~l~l~- 99 (709)
+....+.+.++|+.+|++.+|++--++.+ |+.+.+...+++.-.++|.++++..++++.+.. .....|
T Consensus 48 ~~~~~~~l~~~GL~lFl~~VGl~aG~~F~~~l~~~G~~~~~~~~~i~~~~~~~~~~~~~~~~~l~--------~~~~~G~ 119 (169)
T PF06826_consen 48 PISAPSFLRQLGLALFLAAVGLSAGPGFFSSLKRGGLKLLLLGVIITLVPLLIALVIGRYLFKLN--------PGIAAGI 119 (169)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--------HHHHHHH
Confidence 34566789999999999999999887655 556666677777777788888777777444332 123333
Q ss_pred HHHhhchHHHHHHHHHH
Q 036516 100 VVNSMTSLVVITGLLKE 116 (709)
Q Consensus 100 ~~ls~Ts~~vv~~iL~e 116 (709)
.+=+.|++|.+....+.
T Consensus 120 ~aGa~T~tp~L~~A~~~ 136 (169)
T PF06826_consen 120 LAGALTSTPALAAAQEA 136 (169)
T ss_pred HHccccCcHHHHHHHHh
Confidence 34456888888776554
No 95
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=89.63 E-value=2 Score=45.21 Aligned_cols=113 Identities=13% Similarity=0.168 Sum_probs=72.4
Q ss_pred hHhhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHhHhhhCCCHHHHHHHHHHhhhhhhHHHHHHHhh
Q 036516 251 TSGFLLPVFCAISGIRMELYLINEKSFIKIEFIILMSYLGKFTGVMVPSLFFGMSFLKASCLALIMCCRGIAEIAVYCMW 330 (709)
Q Consensus 251 ~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~l~~~~~~ 330 (709)
-++++=|+-|.-+|..+|++-+....+.. ++-..+=+| +..+++.+..+|++.+|+..+|.+=..-|-..+.+.+.-
T Consensus 67 ~~~l~P~LIF~GIGAmtDFgpllanP~~~--llGaaAQ~G-if~t~~~A~~lGf~~~eAAsIgIIGgADGPtsIf~s~~L 143 (360)
T PF03977_consen 67 SNGLFPPLIFMGIGAMTDFGPLLANPKTL--LLGAAAQFG-IFATFLGAILLGFTPKEAASIGIIGGADGPTSIFVSSKL 143 (360)
T ss_pred hcchhhHHHHHHHhHHHhhHHHHhCHHHH--HHHHHHHHh-HHHHHHHHHHhCCCHHHhhHhhhcccCCCcHHHHHHHhh
Confidence 46788899999999999998765442321 111122222 245666677789999999999998888888887766543
Q ss_pred hccCccchhHHHHHHHHHHHHHHHHHHHHHhhcCcccc
Q 036516 331 KDRKIITNQIFAIMITNMVIITGISTTIVGYLYDPSRR 368 (709)
Q Consensus 331 ~~~~~i~~~~~~~lv~~~ll~t~i~~plv~~ly~p~~~ 368 (709)
- -.++.+-.-.+-.-|+++ =.+-||++|.+-.+++|
T Consensus 144 A-p~LlgpIaVaAYsYMaLv-PiiqPpimklLttkkeR 179 (360)
T PF03977_consen 144 A-PHLLGPIAVAAYSYMALV-PIIQPPIMKLLTTKKER 179 (360)
T ss_pred h-HHHHHHHHHHHHHHHHHH-hhhhhHHHHHhcCHHHH
Confidence 2 223333222223334444 66789999987754433
No 96
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=88.37 E-value=3.8 Score=40.33 Aligned_cols=49 Identities=20% Similarity=0.304 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhCCCHHHHHHHHHHhhhhhhHHHHHHH
Q 036516 280 IEFIILMSYLGKFTGVMVPSLFFGMSFLKASCLALIMCCRGIAEIAVYC 328 (709)
Q Consensus 280 ~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~l~~~~ 328 (709)
.+.+-+..++|-++++++.+++.++|++|++.+|..+.=...-...+..
T Consensus 58 ~Llipl~tIlGSllgg~l~~~ll~~~~~~~lav~sG~GwYSlsg~~i~~ 106 (191)
T PF03956_consen 58 ALLIPLATILGSLLGGLLASLLLGLSLKESLAVASGFGWYSLSGVLITQ 106 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHccCcHHHhHHHHHHh
Confidence 4566677788999999999999999999999999887777666665544
No 97
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=86.63 E-value=40 Score=35.82 Aligned_cols=46 Identities=13% Similarity=0.314 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHhhhcChHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 036516 29 RTFAEFGMILHAFVLGVQIDLGLVKHIRKRAVIIGITSTLLPLVFGLSSF 78 (709)
Q Consensus 29 ~~la~iGli~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~ip~~~g~~~~ 78 (709)
+.+=++|.+ +.|.++++..+.+.+.+.+.+....+...+.+++.++
T Consensus 59 k~~Lr~gIV----LlG~~l~~~~i~~~G~~~~~~~~~~v~~~~~~~~~lg 104 (305)
T PF03601_consen 59 KKLLRLGIV----LLGFRLSFSDILALGWKGLLIIIIVVILTFLLTYWLG 104 (305)
T ss_pred HHHHHHHHH----HHCccccHHHHHHhCccHHHHHHHHHHHHHHHHHHHH
Confidence 356667766 4699999999999999888777776666666655544
No 98
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=85.77 E-value=4.4 Score=38.42 Aligned_cols=85 Identities=15% Similarity=0.233 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcChHHHHhhhh----hHHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhhHHHHHHH-H
Q 036516 26 YVLRTFAEFGMILHAFVLGVQIDLGLVKHIRK----RAVIIGITSTLLPLVFGLSSFRIVQRISHLDDETASSIAASV-V 100 (709)
Q Consensus 26 ~~l~~la~iGli~~lF~~Gle~d~~~l~~~~~----~~~~i~~~~~~ip~~~g~~~~~~l~~~~~~~~~~~~~~l~l~-~ 100 (709)
.....+.++|+.+|++.+|++--.+.+..-.+ ....++.+-.++|.+++..++..+.+.. .....| .
T Consensus 50 ~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v~~~~~~~~~~~~~~~~~~~--------~~~~~G~~ 121 (154)
T TIGR01625 50 SANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALITVVPTLLVAVALIKLLRIN--------YALTAGML 121 (154)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--------HHHHHHHH
Confidence 46777999999999999999998876643322 2333444444555555555554433322 123344 3
Q ss_pred HHhhchHHHHHHHHHHhc
Q 036516 101 VNSMTSLVVITGLLKELK 118 (709)
Q Consensus 101 ~ls~Ts~~vv~~iL~el~ 118 (709)
+=+.|++|.+.-..+..+
T Consensus 122 aGa~T~tpaL~aa~~~~~ 139 (154)
T TIGR01625 122 AGATTNTPALDAANDTLR 139 (154)
T ss_pred hccccChHHHHHHHHHhc
Confidence 456788898877665443
No 99
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=85.12 E-value=3.3 Score=43.55 Aligned_cols=93 Identities=22% Similarity=0.147 Sum_probs=56.7
Q ss_pred EEEeeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCCCCCCCCchhHHHHHHHHHhhhcCCC-cEEEEEEeecCh
Q 036516 555 IVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFITTDQNRPSTEMPDDHELDNQAFDEFKDSMVGN-KIIFREEIVKDG 633 (709)
Q Consensus 555 V~~~f~Gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~-~v~y~e~~v~~g 633 (709)
.++.|.||+|+--.|.++++.-...+..+.++++.+..++ .+ ..+|.+++..++.-+ .+...+.....|
T Consensus 22 ~vv~~SGGKDS~VlLhLa~kaf~~~~~p~~vl~IDTG~~F---------~E-t~efrd~~a~~~gl~l~v~~~~~~~~~g 91 (294)
T TIGR02039 22 PVMLYSIGKDSSVLLHLARKAFYPGPLPFPLLHVDTGWKF---------RE-MIAFRDHMVAKYGLRLIVHSNEEGIADG 91 (294)
T ss_pred cEEEEecChHHHHHHHHHHHHhcccCCCeEEEEEecCCCC---------HH-HHHHHHHHHHHhCCCEEEEechhhhhcC
Confidence 4577999999999999999886544567889998764443 22 345666666554323 332232221111
Q ss_pred h-------h----------HHHHHHhhhcCCcEEEEecCCCCC
Q 036516 634 I-------G----------TTQVIQAFAETFDLFIVGKNHDPC 659 (709)
Q Consensus 634 ~-------~----------~~~~i~~~~~~~DLiiVG~~~~~~ 659 (709)
. + ..+++++ .++|.++.|.+.+..
T Consensus 92 ~~~~~~~~~~~c~vlK~~pL~~al~e--~g~da~itG~RRDEe 132 (294)
T TIGR02039 92 INPFTEGSALHTDIMKTEALRQALDK--NQFDAAFGGARRDEE 132 (294)
T ss_pred ccccccChHHHhhHHHHHHHHHHHHH--cCCCEEEecCChhhh
Confidence 1 1 2223332 479999999987643
No 100
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=84.75 E-value=5.3 Score=47.10 Aligned_cols=123 Identities=15% Similarity=0.302 Sum_probs=75.1
Q ss_pred ceEEEEeeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCCCCCCCCchhHHHHHHHHHhhhcCCC-cEEEEEEee
Q 036516 552 LYHIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFITTDQNRPSTEMPDDHELDNQAFDEFKDSMVGN-KIIFREEIV 630 (709)
Q Consensus 552 ~~~V~~~f~Gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~-~v~y~e~~v 630 (709)
..||++.--|++.....++.|.|+|+..+++.|++++.+++.... .+.+++.-++.+ ++.++..+. ...|
T Consensus 248 ~e~ilvcI~~~~~~e~liR~a~RlA~~~~a~~~av~v~~~~~~~~---~~~~~~~l~~~~-~Lae~lGae~~~l~----- 318 (890)
T COG2205 248 RERILVCISGSPGSEKLIRRAARLASRLHAKWTAVYVETPELHRL---SEKEARRLHENL-RLAEELGAEIVTLY----- 318 (890)
T ss_pred cceEEEEECCCCchHHHHHHHHHHHHHhCCCeEEEEEeccccccc---cHHHHHHHHHHH-HHHHHhCCeEEEEe-----
Confidence 468999999999999999999999999999999999987544311 111122221211 222232222 2223
Q ss_pred cChhhHHHHHHhhh--cCCcEEEEecCCCCCcccccccCcCCCCCccchhhhhhhcCCCCcceEEEe
Q 036516 631 KDGIGTTQVIQAFA--ETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEFSVLVVQ 695 (709)
Q Consensus 631 ~~g~~~~~~i~~~~--~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~SvLvvq 695 (709)
|.++...+-+.+ .+.--+++|++++. .|-+.=+ |.+.|-|+..--+..|-+|-
T Consensus 319 --~~dv~~~i~~ya~~~~~TkiViG~~~~~---------rw~~~~~-~~l~~~L~~~~~~idv~ii~ 373 (890)
T COG2205 319 --GGDVAKAIARYAREHNATKIVIGRSRRS---------RWRRLFK-GSLADRLAREAPGIDVHIVA 373 (890)
T ss_pred --CCcHHHHHHHHHHHcCCeeEEeCCCcch---------HHHHHhc-ccHHHHHHhcCCCceEEEee
Confidence 233444443333 36779999999864 4644322 78888887653222555553
No 101
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=84.74 E-value=18 Score=40.52 Aligned_cols=72 Identities=15% Similarity=0.227 Sum_probs=51.2
Q ss_pred hhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHhHhhh--CCCHHHHHHHHHHhhhhhhHHHH
Q 036516 253 GFLLPVFCAISGIRMELYLINEKSFIKIEFIILMSYLGKFTGVMVPSLFF--GMSFLKASCLALIMCCRGIAEIA 325 (709)
Q Consensus 253 ~~flPlFF~~~G~~~d~~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~--~~~~~~~~~lg~~m~~kG~~~l~ 325 (709)
.+++|+-....|+++|...+... +..+..+.....+...++.....++. ++|+..++.+|.++++-.-+.+.
T Consensus 64 ~l~l~ilLf~~g~~l~~~~l~~~-~~~I~~La~~~v~it~~~~g~~~~~l~~~i~~~~a~l~gAilspTDPv~v~ 137 (429)
T COG0025 64 VLFLAILLFAGGLELDLRELRRV-WRSILVLALPLVLITALGIGLLAHWLLPGIPLAAAFLLGAILSPTDPVAVS 137 (429)
T ss_pred HHHHHHHHHHhHhcCCHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHhHHhcCCCchhhH
Confidence 67788888889999999888764 33344444444445555555555555 89999999999999888766544
No 102
>PRK15475 oxaloacetate decarboxylase subunit beta; Provisional
Probab=84.30 E-value=1.3 Score=47.02 Aligned_cols=125 Identities=12% Similarity=0.122 Sum_probs=71.1
Q ss_pred hhHhhhhHHHHHHhhhccccccccch-hhHHHHHHHHHHHHHHHHHHHHhHh--hhCCCHHHHHHHHHHhhhhhhHHHHH
Q 036516 250 FTSGFLLPVFCAISGIRMELYLINEK-SFIKIEFIILMSYLGKFTGVMVPSL--FFGMSFLKASCLALIMCCRGIAEIAV 326 (709)
Q Consensus 250 ~~~~~flPlFF~~~G~~~d~~~l~~~-~~~~~~~ii~~~~~~K~~~~~l~~~--~~~~~~~~~~~lg~~m~~kG~~~l~~ 326 (709)
+.++++=|+.|.-+|..+|++-+... ...+.....=.+++.-++++..... ..+++.+|+-.+|.+=..-|-..+.+
T Consensus 131 i~~gi~P~LIF~GIGAMtDFgpLlanP~~~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsIfv 210 (433)
T PRK15475 131 IGSGVAPLVIFMGVGAMTDFGPLLANPRTLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIYL 210 (433)
T ss_pred HhcchHHHHHHHhccHHhcchHHhhCHHHHHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCchHHHh
Confidence 35678889999999999999876533 1111111222222222232222211 13789999999999888888887776
Q ss_pred HHhhhccCccchhHHHHHHHHHHHHHHHHHHHHHhhcCcc-ccccchhhcc
Q 036516 327 YCMWKDRKIITNQIFAIMITNMVIITGISTTIVGYLYDPS-RRYKLDVRRA 376 (709)
Q Consensus 327 ~~~~~~~~~i~~~~~~~lv~~~ll~t~i~~plv~~ly~p~-~~~~~~~~r~ 376 (709)
.+.-- -.++.+-.-.+-..|+++ =.+-||++|.+-.++ |+..-++.|+
T Consensus 211 sskLA-P~Llg~IaVAAYSYMaLV-PiIQPpimklLTTkkER~I~M~~lr~ 259 (433)
T PRK15475 211 SGKLA-PELLGAIAVAAYSYMALV-PLIQPPIMKALTTETERKIRMVQLRT 259 (433)
T ss_pred Hhhhh-hHhHHHHHHHHHHHHHHH-hcccchHHHhccCHHHhCccCCCCCC
Confidence 55432 223332222222344444 666889999876443 3333334443
No 103
>PRK15477 oxaloacetate decarboxylase subunit beta; Provisional
Probab=84.18 E-value=1.3 Score=46.99 Aligned_cols=125 Identities=12% Similarity=0.118 Sum_probs=70.9
Q ss_pred hhHhhhhHHHHHHhhhccccccccch-hhHHHHHHHHHHHHHHHHHHHHhHh--hhCCCHHHHHHHHHHhhhhhhHHHHH
Q 036516 250 FTSGFLLPVFCAISGIRMELYLINEK-SFIKIEFIILMSYLGKFTGVMVPSL--FFGMSFLKASCLALIMCCRGIAEIAV 326 (709)
Q Consensus 250 ~~~~~flPlFF~~~G~~~d~~~l~~~-~~~~~~~ii~~~~~~K~~~~~l~~~--~~~~~~~~~~~lg~~m~~kG~~~l~~ 326 (709)
+.++++=|+.|.-+|..+|++-+... ...+.....=.+++.-++++..... ..+++.+|+-.+|.+=..-|-..+.+
T Consensus 131 i~~gi~P~LIF~GIGAMtDFgpLlanP~~~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsIfv 210 (433)
T PRK15477 131 IGSGVAPLVIFMGVGAMTDFGPLLANPRTLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIYL 210 (433)
T ss_pred HhcchHHHHHHHhccHHhcchHHhhCHHHHHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCchHHHh
Confidence 34678888999999999999876533 1111111222222222232222211 13789999999999888888887776
Q ss_pred HHhhhccCccchhHHHHHHHHHHHHHHHHHHHHHhhcCcc-ccccchhhcc
Q 036516 327 YCMWKDRKIITNQIFAIMITNMVIITGISTTIVGYLYDPS-RRYKLDVRRA 376 (709)
Q Consensus 327 ~~~~~~~~~i~~~~~~~lv~~~ll~t~i~~plv~~ly~p~-~~~~~~~~r~ 376 (709)
.+.-- -.++.+-.-.+-..|+++ =.+-||++|.+-.++ |+..-++.|+
T Consensus 211 sskLA-P~Llg~IaVAAYSYMaLV-PiIQPpimklLTTkkER~I~M~~lr~ 259 (433)
T PRK15477 211 SGKLA-PELLGAIAVAAYSYMALV-PLIQPPIMKALTTEKERKIRMVQLRT 259 (433)
T ss_pred Hhhhh-hHhHHHHHHHHHHHHHHH-hcccchHHHhccCHHHhCccCCCCCC
Confidence 55432 223332222222334444 666889998876443 3333234443
No 104
>PRK15476 oxaloacetate decarboxylase subunit beta; Provisional
Probab=84.17 E-value=1.3 Score=46.98 Aligned_cols=125 Identities=12% Similarity=0.118 Sum_probs=71.0
Q ss_pred hhHhhhhHHHHHHhhhccccccccch-hhHHHHHHHHHHHHHHHHHHHHhHh--hhCCCHHHHHHHHHHhhhhhhHHHHH
Q 036516 250 FTSGFLLPVFCAISGIRMELYLINEK-SFIKIEFIILMSYLGKFTGVMVPSL--FFGMSFLKASCLALIMCCRGIAEIAV 326 (709)
Q Consensus 250 ~~~~~flPlFF~~~G~~~d~~~l~~~-~~~~~~~ii~~~~~~K~~~~~l~~~--~~~~~~~~~~~lg~~m~~kG~~~l~~ 326 (709)
+.++++=|+.|.-+|..+|++-+... ...+.....=.+++.-++++..... ..+++.+|+-.+|.+=..-|-..+.+
T Consensus 131 i~~gi~P~LIF~GIGAMtDFgpLlanP~~~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsIfv 210 (433)
T PRK15476 131 IGSGVAPLVIFMGVGAMTDFGPLLANPRTLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIYL 210 (433)
T ss_pred HhcchHHHHHHHhccHHhcchHHhhCHHHHHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCchHHHh
Confidence 34678889999999999999876533 1111111222222222232222211 13789999999999888888887776
Q ss_pred HHhhhccCccchhHHHHHHHHHHHHHHHHHHHHHhhcCcc-ccccchhhcc
Q 036516 327 YCMWKDRKIITNQIFAIMITNMVIITGISTTIVGYLYDPS-RRYKLDVRRA 376 (709)
Q Consensus 327 ~~~~~~~~~i~~~~~~~lv~~~ll~t~i~~plv~~ly~p~-~~~~~~~~r~ 376 (709)
.+.-- -.++.+-.-.+-..|+++ =.+-||++|.+-.++ |+..-++.|+
T Consensus 211 sskLA-P~Llg~IaVAAYSYMaLV-PiIQPpimklLTTkkER~I~M~~lr~ 259 (433)
T PRK15476 211 SGKLA-PELLGAIAVAAYSYMALV-PLIQPPIMKALTTEKERKIRMVQLRT 259 (433)
T ss_pred Hhhhh-hHhHHHHHHHHHHHHHHH-hcccchHHHhccCHHHhCccCCCCCC
Confidence 55432 223332222222334444 666889998876443 3333234443
No 105
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=83.39 E-value=7 Score=38.12 Aligned_cols=37 Identities=16% Similarity=0.196 Sum_probs=32.7
Q ss_pred EEEEeeccCcChHHHHHHHHHHhcCCCeEEEEEEeee
Q 036516 554 HIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFIT 590 (709)
Q Consensus 554 ~V~~~f~Gg~ddreAl~~a~rma~~~~~~ltvl~v~~ 590 (709)
||++.+.||.|+--++.++.+.++..+.+++++++..
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~~~~~v~~v~vd~ 37 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPKLKIRLIAAHVDH 37 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 4889999999999999999999888778899999864
No 106
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=83.07 E-value=66 Score=35.55 Aligned_cols=114 Identities=12% Similarity=0.019 Sum_probs=66.8
Q ss_pred HhhhhHHHHHHhhhccccccccch--hhHHHHHHHHHHHHHHHHHHHHhHhhhCCCHHHHHHHHHHhhhhhhHHHHHHHh
Q 036516 252 SGFLLPVFCAISGIRMELYLINEK--SFIKIEFIILMSYLGKFTGVMVPSLFFGMSFLKASCLALIMCCRGIAEIAVYCM 329 (709)
Q Consensus 252 ~~~flPlFF~~~G~~~d~~~l~~~--~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~l~~~~~ 329 (709)
.++|+-+||+.+|+..++..+... .......+..+..++..+.....+..++++..=++..|-.--.-|+-......-
T Consensus 66 ~~~lm~~fFatigLga~~~~l~~gg~~l~~~~~~~~~l~~~Qn~vGv~la~~~gl~P~~Gll~gsi~~~GGHGTAaA~g~ 145 (398)
T TIGR00210 66 RDPLMLIFFTTIGLSANFKSLLKGGKPLLIFLATAVGFLVIQNAVGIGMASLLGQAPLMGLLAGSITLSGGHGTGAAWSP 145 (398)
T ss_pred HHHHHHHHHHHhhhcCChHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHhhCccCCCCCcHHHHHHH
Confidence 467888999999999998877644 222223333345566777666777888999887766432222333333333222
Q ss_pred hh-c-cCccchhHHHH--HHHHHHHHHHHHHHHHHhhcCc
Q 036516 330 WK-D-RKIITNQIFAI--MITNMVIITGISTTIVGYLYDP 365 (709)
Q Consensus 330 ~~-~-~~~i~~~~~~~--lv~~~ll~t~i~~plv~~ly~p 365 (709)
.. + .|+-+.....+ -.+-.+..+.+..|+.+++.|.
T Consensus 146 ~f~e~~G~~~a~~lgla~AT~GLv~g~liGgpi~~~lirk 185 (398)
T TIGR00210 146 VFYDNYGFRNATEIAIACATFGLVFGGIIGGPVAKFLIIR 185 (398)
T ss_pred HHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 23 3 46554443332 2233345566678999986643
No 107
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=82.80 E-value=5.1 Score=46.41 Aligned_cols=85 Identities=18% Similarity=0.253 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcChHHH---HhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhhHHHHHHH-H
Q 036516 25 RYVLRTFAEFGMILHAFVLGVQIDLGLV---KHIRKRAVIIGITSTLLPLVFGLSSFRIVQRISHLDDETASSIAASV-V 100 (709)
Q Consensus 25 ~~~l~~la~iGli~~lF~~Gle~d~~~l---~~~~~~~~~i~~~~~~ip~~~g~~~~~~l~~~~~~~~~~~~~~l~l~-~ 100 (709)
......+.++|+.+|++.+|++--++.+ ++.+.+...+|.+-.++|.++++.+++++.+.. .....| +
T Consensus 443 ~~a~~~l~~~GL~lFla~vG~~aG~~f~~~l~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--------~~~~~G~~ 514 (562)
T TIGR03802 443 SSASWLLKDLGLALFIAVVGLSAGPQAVTAIKEMGLTLFLLGIVVTILPLIITMLIGKYVLKYD--------PALLLGAL 514 (562)
T ss_pred HHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--------HHHHHHHh
Confidence 4566779999999999999998887655 556666667777777788877777775444432 233444 4
Q ss_pred HHhhchHHHHHHHHHHh
Q 036516 101 VNSMTSLVVITGLLKEL 117 (709)
Q Consensus 101 ~ls~Ts~~vv~~iL~el 117 (709)
+=+.|++|.+.-..+..
T Consensus 515 aG~~t~t~~l~~a~~~~ 531 (562)
T TIGR03802 515 AGARTATPALGAVLERA 531 (562)
T ss_pred hccCCCcHHHHHHHHhc
Confidence 45678888887665543
No 108
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=82.70 E-value=0.49 Score=51.88 Aligned_cols=111 Identities=19% Similarity=0.298 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhchhHhHHHHHHHHhcCCCCChh--hHHHhhhhhhhHhhhhHHHHHHhhhccccccccchhhHHHHHHH
Q 036516 207 IVLVTTILGTLVGQNSILTAFFFGLCLPDGPPLG--TQLVQKLDFFTSGFLLPVFCAISGIRMELYLINEKSFIKIEFII 284 (709)
Q Consensus 207 ~~l~~~~~~~~~G~~~~lGaf~~Gl~ip~~~~~~--~~l~~kl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~ii 284 (709)
.+++...+.+.++++.++|-.++|+++...+ ++ +.-.+.++.+ ..+.+++.....|+++|...+... +.....+.
T Consensus 7 ~~~~~~~l~~r~~iP~~i~~i~~Gi~lg~~~-~~~~~~~~~~~~~l-~~i~l~~llF~~G~~~d~~~l~~~-~~~~~~~~ 83 (380)
T PF00999_consen 7 LAFVAGILFRRLGIPSIIGYILVGIVLGPSG-LGLLEPDNPSFELL-AEIGLAFLLFEAGLELDIKELRRN-WRRALALG 83 (380)
T ss_dssp ------------------------------------------S-SS-HHHHS--SSHHHHTTGGGG--------------
T ss_pred hHHHHHHHHHHhCCCHHHHHHHheeehhhhh-hhhccchhhHHHHH-HHHHHHHHHHHHHHhhcccccccc-cccccccc
Confidence 3444445688899999999999999998753 22 1112344444 677788888889999999887654 33333333
Q ss_pred HHHHHHHHHH-HHHhHh---hhCCCHHHHHHHHHHhhhhh
Q 036516 285 LMSYLGKFTG-VMVPSL---FFGMSFLKASCLALIMCCRG 320 (709)
Q Consensus 285 ~~~~~~K~~~-~~l~~~---~~~~~~~~~~~lg~~m~~kG 320 (709)
+..++.-++. ++.... ..++++.+++.+|..+++-.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~l~~~~~~ts 123 (380)
T PF00999_consen 84 LVGFLLPFILVGFLLSFFLFILGLSWAEALLLGAILSATS 123 (380)
T ss_dssp ------------------------------TTHHHHTT--
T ss_pred cceeeehhhHHHHHHHHhhccchhhhHHHhhhHHhhhccc
Confidence 3333334444 444443 46889999998888776554
No 109
>PRK03818 putative transporter; Validated
Probab=81.22 E-value=18 Score=41.77 Aligned_cols=84 Identities=15% Similarity=0.192 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcChHHHH---hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhhHHHHHHH-H
Q 036516 25 RYVLRTFAEFGMILHAFVLGVQIDLGLVK---HIRKRAVIIGITSTLLPLVFGLSSFRIVQRISHLDDETASSIAASV-V 100 (709)
Q Consensus 25 ~~~l~~la~iGli~~lF~~Gle~d~~~l~---~~~~~~~~i~~~~~~ip~~~g~~~~~~l~~~~~~~~~~~~~~l~l~-~ 100 (709)
......+.++|+.+|+|.+|++--++.+. +.+.+-..+++.-.++|.++++.+.+++... .....| .
T Consensus 56 ~~~~~~~~~~gl~lFv~~vGl~~Gp~f~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~G~~ 126 (552)
T PRK03818 56 SDMLHFIQEFGLILFVYTIGIQVGPGFFSSLRKSGLRLNLFAVLIVILGGLVTAILHKLFGIP---------LPVMLGIF 126 (552)
T ss_pred hHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCC---------HHHHHHHh
Confidence 45677799999999999999999987664 4555666666666666777766654443321 123333 3
Q ss_pred HHhhchHHHHHHHHHHh
Q 036516 101 VNSMTSLVVITGLLKEL 117 (709)
Q Consensus 101 ~ls~Ts~~vv~~iL~el 117 (709)
+=+.|++|.+....+..
T Consensus 127 aGa~T~tp~l~aa~~~~ 143 (552)
T PRK03818 127 SGAVTNTPALGAGQQIL 143 (552)
T ss_pred hccccccHHHHHHHHHH
Confidence 44678888887765544
No 110
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=80.84 E-value=4.5 Score=42.49 Aligned_cols=112 Identities=13% Similarity=0.089 Sum_probs=66.5
Q ss_pred hhHhhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHhHhhhCC------CHHHHHHHHHHhhhhhhHH
Q 036516 250 FTSGFLLPVFCAISGIRMELYLINEKSFIKIEFIILMSYLGKFTGVMVPSLFFGM------SFLKASCLALIMCCRGIAE 323 (709)
Q Consensus 250 ~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~------~~~~~~~lg~~m~~kG~~~ 323 (709)
+.++++=|+-|.-+|..+|++-+...... .++-..+=+| +..+++.+...|+ +.+|+-.+|.+=..-|-..
T Consensus 60 i~~~l~P~LIFlGIGAmtDFgpllanP~~--~llGaaAQ~G-iF~t~~~A~~lGf~~~~~~~~~eAAsIgIIGgADGPt~ 136 (354)
T TIGR01109 60 IGSGIAPLLIFMGIGALTDFGPLLANPRT--LLLGAAAQFG-IFATVFGALTLNFFGIISFSLPQAAAIGIIGGADGPTA 136 (354)
T ss_pred HhcchHHHHHHHhccHHhhhHHHHhChHH--HHHHHHHHhh-HHHHHHHHHHhCCCcccccChhhceeeeeeccCCCchh
Confidence 45788899999999999999876543221 1111111121 2334455555666 7799999998877778777
Q ss_pred HHHHHhhhccCccchhHHHHHHHHHHHHHHHHHHHHHhhcCcc
Q 036516 324 IAVYCMWKDRKIITNQIFAIMITNMVIITGISTTIVGYLYDPS 366 (709)
Q Consensus 324 l~~~~~~~~~~~i~~~~~~~lv~~~ll~t~i~~plv~~ly~p~ 366 (709)
+.+.+.-. -.++.+-.-.+-.-|+++ =.+-||++|.+-.++
T Consensus 137 If~s~~la-p~Llg~IaVAAYsYMaLv-PiiqPpimklLttkk 177 (354)
T TIGR01109 137 IYLSGKLA-PELLAAIAVAAYSYMALV-PIIQPPIMKALTSEK 177 (354)
T ss_pred hhhHhhhh-hHHHHHHHHHHHHHHHHH-hcccchHHHhhcChH
Confidence 66654322 222222222222233444 566789998876443
No 111
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=80.76 E-value=7 Score=41.42 Aligned_cols=40 Identities=20% Similarity=0.167 Sum_probs=31.7
Q ss_pred EEEEeeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCC
Q 036516 554 HIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFITTDQ 593 (709)
Q Consensus 554 ~V~~~f~Gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~ 593 (709)
++++.|.||+|+--.|.++++.-...+..+.++++.+..+
T Consensus 29 ~~vv~~SGGKDS~VLL~La~ka~~~~~~~~~vl~iDTG~~ 68 (301)
T PRK05253 29 NPVMLYSIGKDSSVMLHLARKAFYPGKLPFPLLHVDTGWK 68 (301)
T ss_pred CEEEEecCCHHHHHHHHHHHHhhcccCCCeeEEEEeCCCC
Confidence 4889999999999999999887554456678888876443
No 112
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=79.81 E-value=1e+02 Score=34.04 Aligned_cols=95 Identities=13% Similarity=0.184 Sum_probs=55.8
Q ss_pred chhHhHHHHHHHHhcCCCCChh--hHHHhhhhhhhHhhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHH
Q 036516 219 GQNSILTAFFFGLCLPDGPPLG--TQLVQKLDFFTSGFLLPVFCAISGIRMELYLINEKSFIKIEFIILMSYLGKFTGVM 296 (709)
Q Consensus 219 G~~~~lGaf~~Gl~ip~~~~~~--~~l~~kl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~ii~~~~~~K~~~~~ 296 (709)
.+....+|++.|+++.+.-+.. .++.++.-+.+.++.+-+|.+..=|.++++.+.+....+.++++.-..+.=+...+
T Consensus 244 ~lP~fv~am~~giiirni~~~~~~~~~~~~~i~~I~~~sLdlfl~~AlmsL~L~~l~~~a~Plliil~~q~i~~~l~~~f 323 (398)
T TIGR00210 244 MLPTFVWCLFVGVILRNPLSFKKFPWVAERAVSVIGNVSLSLFLAIALMSLQLWELADLAGPIALILLVQVMFMALYAIF 323 (398)
T ss_pred CCCchHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667899999999998732111 12233333444667777888888888998888765333333333222333334555
Q ss_pred HhHhhhCCCHHHHHHHHH
Q 036516 297 VPSLFFGMSFLKASCLAL 314 (709)
Q Consensus 297 l~~~~~~~~~~~~~~lg~ 314 (709)
+.-|.++.+ -|+-.++.
T Consensus 324 v~fr~mg~~-ydaaV~~a 340 (398)
T TIGR00210 324 VTFRLMGKD-YDAAVLCA 340 (398)
T ss_pred HhHHhccch-HHHHHHhc
Confidence 666777766 56655433
No 113
>PRK12342 hypothetical protein; Provisional
Probab=79.59 E-value=7.1 Score=40.25 Aligned_cols=92 Identities=10% Similarity=0.076 Sum_probs=53.9
Q ss_pred CcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCCCCCCCCchhHHHHHHHHHhhhcCCCcEEEEEEeecChhhHHH---
Q 036516 562 GADDREALAYSRRMAEHPNTSLTVVWFITTDQNRPSTEMPDDHELDNQAFDEFKDSMVGNKIIFREEIVKDGIGTTQ--- 638 (709)
Q Consensus 562 g~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~v~y~e~~v~~g~~~~~--- 638 (709)
+|.|+-|++.|.|+.+ .+.++|++.+=++.. .+.+.+++.-..-.+.-+...+... .|.|+..
T Consensus 34 Np~D~~AlE~AlrLk~-~g~~Vtvls~Gp~~a------------~~~~l~r~alamGaD~avli~d~~~-~g~D~~ata~ 99 (254)
T PRK12342 34 SQFDLNAIEAASQLAT-DGDEIAALTVGGSLL------------QNSKVRKDVLSRGPHSLYLVQDAQL-EHALPLDTAK 99 (254)
T ss_pred ChhhHHHHHHHHHHhh-cCCEEEEEEeCCChH------------hHHHHHHHHHHcCCCEEEEEecCcc-CCCCHHHHHH
Confidence 8999999999999994 678999999754211 0111334333222222222222322 2345533
Q ss_pred ----HHHhhhcCCcEEEEecCCCCC-----cccccccCcC
Q 036516 639 ----VIQAFAETFDLFIVGKNHDPC-----CKATLGLSEW 669 (709)
Q Consensus 639 ----~i~~~~~~~DLiiVG~~~~~~-----~~~~~gl~~w 669 (709)
+++.. +||||+-|+..... .|++.++.+|
T Consensus 100 ~La~~i~~~--~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~ 137 (254)
T PRK12342 100 ALAAAIEKI--GFDLLLFGEGSGDLYAQQVGLLLGELLQL 137 (254)
T ss_pred HHHHHHHHh--CCCEEEEcCCcccCCCCCHHHHHHHHhCC
Confidence 23432 59999999987444 4666666666
No 114
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=79.37 E-value=76 Score=32.21 Aligned_cols=83 Identities=11% Similarity=0.008 Sum_probs=56.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHhhhCCCHHHHHHHHHHhhhhhhHHHHHHHhhhccCccchhHHHHHHHHHHHHHHHH
Q 036516 276 SFIKIEFIILMSYLGKFTGVMVPSLFFGMSFLKASCLALIMCCRGIAEIAVYCMWKDRKIITNQIFAIMITNMVIITGIS 355 (709)
Q Consensus 276 ~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~l~~~~~~~~~~~i~~~~~~~lv~~~ll~t~i~ 355 (709)
.|..+.+-++++.+.-++++++.++.+|.+.. +-..|.+|....=+...+..+.|-+.+-+-..++++-++-..+.
T Consensus 92 ~~~~Il~~~~vG~~~~i~s~~~la~~lgl~~~----~~~Sl~pKSVTtPIAm~is~~iGG~psLtA~~ViitGi~Gai~g 167 (232)
T PRK04288 92 YWWQILGGIVVGSVCSVLIIYLVAKLIQLDNA----VMASMLPQAATTAIALPVSAGIGGIKEITSFAVIFNAVIIYALG 167 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH----HHHHHhhHhhhHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHH
Confidence 35545555556666677788888899888764 22346799999888888888877765555555555666656666
Q ss_pred HHHHHhh
Q 036516 356 TTIVGYL 362 (709)
Q Consensus 356 ~plv~~l 362 (709)
+++++++
T Consensus 168 ~~llk~~ 174 (232)
T PRK04288 168 AKFLKLF 174 (232)
T ss_pred HHHHHHc
Confidence 7776663
No 115
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=79.28 E-value=12 Score=36.22 Aligned_cols=37 Identities=19% Similarity=0.218 Sum_probs=32.3
Q ss_pred EEEEeeccCcChHHHHHHHHHHhcCCCeEEEEEEeee
Q 036516 554 HIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFIT 590 (709)
Q Consensus 554 ~V~~~f~Gg~ddreAl~~a~rma~~~~~~ltvl~v~~ 590 (709)
+|++.+.||.|+--++.++.+...+.+.+++++++.+
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~~~~~v~~v~id~ 37 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPRLGLRLVAVHVDH 37 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCcEEEEEecC
Confidence 4789999999999999999998877677889999865
No 116
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=78.98 E-value=76 Score=31.97 Aligned_cols=83 Identities=11% Similarity=0.049 Sum_probs=60.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHhhhCCCHHHHHHHHHHhhhhhhHHHHHHHhhhccCccchhHHHHHHHHHHHHHHHH
Q 036516 276 SFIKIEFIILMSYLGKFTGVMVPSLFFGMSFLKASCLALIMCCRGIAEIAVYCMWKDRKIITNQIFAIMITNMVIITGIS 355 (709)
Q Consensus 276 ~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~l~~~~~~~~~~~i~~~~~~~lv~~~ll~t~i~ 355 (709)
.|..+..-++++.+.-++.+++.++.++.+..-. ..+.+|....=+...+..+.|-+.+-+-..++++-++...+.
T Consensus 89 ~w~~I~~g~~vGs~~ai~s~~llak~~g~~~~~~----~Sl~PkSvTTpiAm~vs~~iGGip~ltav~Vi~tGi~Gavlg 164 (230)
T COG1346 89 HWKPILAGVLVGSVVAIISGVLLAKLFGLSPELI----LSLLPKSVTTPIAMEVSESIGGIPALTAVFVILTGILGAVLG 164 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH----HHhcccccccHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHH
Confidence 4665556666666677788888899998876532 336799999888888888888887666666666777767777
Q ss_pred HHHHHhh
Q 036516 356 TTIVGYL 362 (709)
Q Consensus 356 ~plv~~l 362 (709)
+++.+++
T Consensus 165 ~~llk~~ 171 (230)
T COG1346 165 PLLLKLL 171 (230)
T ss_pred HHHHHHh
Confidence 7777764
No 117
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=78.94 E-value=11 Score=36.50 Aligned_cols=95 Identities=15% Similarity=0.217 Sum_probs=55.0
Q ss_pred EEEEeeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCCCCCCCCchhHHHHHHHHHhhhcCCCcEEEEEEee--c
Q 036516 554 HIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFITTDQNRPSTEMPDDHELDNQAFDEFKDSMVGNKIIFREEIV--K 631 (709)
Q Consensus 554 ~V~~~f~Gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~v~y~e~~v--~ 631 (709)
+|++-+.||+|+--.|.+..++.+..+.+++++++...-. .+...+.++++++..+.. -...+.+... .
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~~~~~~~~~~~vdh~~~--------~~s~~~~~~v~~~~~~~~-i~~~~~~~~~~~~ 71 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRRRNGIKLIAVHVDHGLR--------EESDEEAEFVEEICEQLG-IPLYIVRIDEDRK 71 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHTTTTTEEEEEEEE-STS--------CCHHHHHHHHHHHHHHTT--EEEEEE--CHCC
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCC--------cccchhHHHHHHHHHhcC-CceEEEEeeeeec
Confidence 4788899999999999999999999999999999976211 124456677777776653 1122222221 1
Q ss_pred ChhhHHH--------HHHhhh--cCCcEEEEecCCC
Q 036516 632 DGIGTTQ--------VIQAFA--ETFDLFIVGKNHD 657 (709)
Q Consensus 632 ~g~~~~~--------~i~~~~--~~~DLiiVG~~~~ 657 (709)
.+....+ ++.+.+ .++|.++.|-|.+
T Consensus 72 ~~~~~e~~aR~~Ry~~l~~~a~~~g~~~i~~GHh~d 107 (182)
T PF01171_consen 72 KGSNIEECARELRYQFLREIAKEEGCNKIALGHHLD 107 (182)
T ss_dssp TTSTCHHHHHHHHHHHHHHHHHTTT-CEEE---BHH
T ss_pred ccCCHHHHHHHHHHHHHHHhhhcccccceeecCcCC
Confidence 1222222 333444 4589999998753
No 118
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=77.53 E-value=8.4 Score=39.79 Aligned_cols=102 Identities=11% Similarity=0.076 Sum_probs=56.6
Q ss_pred CcChHHHHHHHHHHhcCCC-eEEEEEEeeecCCCCCCCCCCCchhHHHHHHHHHhhhcCCCcEEEEEEeecChhhHHH--
Q 036516 562 GADDREALAYSRRMAEHPN-TSLTVVWFITTDQNRPSTEMPDDHELDNQAFDEFKDSMVGNKIIFREEIVKDGIGTTQ-- 638 (709)
Q Consensus 562 g~ddreAl~~a~rma~~~~-~~ltvl~v~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~v~y~e~~v~~g~~~~~-- 638 (709)
+|.|+-|++.|.|+.++.+ .++|++.+=+++. .+++.+++.-..-. ++....+-..-.|.|+..
T Consensus 35 N~~D~~AlE~Alrlke~~~g~~Vtvvs~Gp~~a------------~~~~~lr~aLAmGa-D~avli~d~~~~g~D~~~tA 101 (256)
T PRK03359 35 SQYDLNAIEAACQLKQQAAEAQVTALSVGGKAL------------TNAKGRKDVLSRGP-DELIVVIDDQFEQALPQQTA 101 (256)
T ss_pred ChhhHHHHHHHHHHhhhcCCCEEEEEEECCcch------------hhHHHHHHHHHcCC-CEEEEEecCcccCcCHHHHH
Confidence 7999999999999999764 7999999754211 11223443332222 222222211112334443
Q ss_pred -H----HHhhhcCCcEEEEecCCCC-C----cccccccCcCCCCCccchhhhh
Q 036516 639 -V----IQAFAETFDLFIVGKNHDP-C----CKATLGLSEWIEYPELGILGDT 681 (709)
Q Consensus 639 -~----i~~~~~~~DLiiVG~~~~~-~----~~~~~gl~~w~e~~eLG~igd~ 681 (709)
+ +++. +||||+-|+.... . .++++++.+| |-+..+-++
T Consensus 102 ~~La~ai~~~--~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~---P~vt~v~~l 149 (256)
T PRK03359 102 SALAAAAQKA--GFDLILCGDGSSDLYAQQVGLLVGEILNI---PAINGVSKI 149 (256)
T ss_pred HHHHHHHHHh--CCCEEEEcCccccCCCCcHHHHHHHHhCC---CceeeEEEE
Confidence 2 3432 6999999998632 2 2344444444 555555443
No 119
>COG2985 Predicted permease [General function prediction only]
Probab=77.06 E-value=7.6 Score=43.04 Aligned_cols=79 Identities=16% Similarity=0.265 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHhhhcChHHH---HhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhhHHHHHHH-HHHhhchHH
Q 036516 33 EFGMILHAFVLGVQIDLGLV---KHIRKRAVIIGITSTLLPLVFGLSSFRIVQRISHLDDETASSIAASV-VVNSMTSLV 108 (709)
Q Consensus 33 ~iGli~~lF~~Gle~d~~~l---~~~~~~~~~i~~~~~~ip~~~g~~~~~~l~~~~~~~~~~~~~~l~l~-~~ls~Ts~~ 108 (709)
++|+++|.+.+|+|--+..+ +|.+++-..+++.- ++.+..+++++.+....+ ..+..| .+=+.||+|
T Consensus 62 ~lGL~LFVy~iGl~aGP~FFss~~~~Gl~~~~~alli----vi~~~~~a~~l~k~~~~~-----~~~~~Gm~sGAlTsTP 132 (544)
T COG2985 62 ELGLILFVYTIGLEAGPGFFSSFRKSGLNLNAFALLI----VIAALLLAWVLHKLFGID-----LGLIAGMFSGALTSTP 132 (544)
T ss_pred hhhhhHhhhhhhheecccHhHHHHHhhhHHHHHHHHH----HHHHHHHHHHHHhhcCCC-----HHHhhhhhcccccCCc
Confidence 99999999999999998655 66677665554432 445555566666655421 122222 233457777
Q ss_pred HHHH---HHHHhccc
Q 036516 109 VITG---LLKELKML 120 (709)
Q Consensus 109 vv~~---iL~el~ll 120 (709)
.... +|+|++..
T Consensus 133 ~L~aa~~~L~~lg~~ 147 (544)
T COG2985 133 GLGAAQDILRELGAP 147 (544)
T ss_pred hhHHHHHHHHhhccc
Confidence 6654 46666643
No 120
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=76.21 E-value=1.2e+02 Score=32.80 Aligned_cols=101 Identities=16% Similarity=0.195 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHHhhc------c-cCCCCchhH-HHHHHHHHHHHHHHHHHhchhHhHHHHHHHHhcCCCCChhhH
Q 036516 171 YYIIVIFLVRPLTMRIVSKN------S-EEESMNQNH-FIITICIVLVTTILGTLVGQNSILTAFFFGLCLPDGPPLGTQ 242 (709)
Q Consensus 171 ~~~~~~~v~r~~~~~i~~~~------~-~~~~~~e~~-~~~vl~~~l~~~~~~~~~G~~~~lGaf~~Gl~ip~~~~~~~~ 242 (709)
|..++-.+-+|+++++..+. + +.+++++.. +.+-++.+.+++.+. =.-.+.+|.+.+|-.+.+.. . ++
T Consensus 195 YMaLVPiiqPpimklLttkkER~I~M~~~~r~VSk~eKilFpivv~i~~~ll~--P~a~pLig~Lm~GNllrEsG-v-~r 270 (399)
T TIGR03136 195 YLSLTYAGYPYLIKLLVPKKYRGLEVEMEFPDVSQRAKFVFTIVAAMLLCLLL--PVASPLILSFFLGVAIKEAQ-I-EP 270 (399)
T ss_pred HHHHHhcccchHHHhhcCHHHHcccCccCCCCCCccchhHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHHHhC-c-HH
Confidence 34444556677777764331 1 122333332 455555555555542 12368999999999999865 3 66
Q ss_pred HHhhhhhhhHhhhhHHHHHHhhhccccccccch
Q 036516 243 LVQKLDFFTSGFLLPVFCAISGIRMELYLINEK 275 (709)
Q Consensus 243 l~~kl~~~~~~~flPlFF~~~G~~~d~~~l~~~ 275 (709)
+.+..+.-..++.--+.-..+|...+-..+.+.
T Consensus 271 Ls~taqn~l~nivTifLGl~vG~t~~A~~FL~~ 303 (399)
T TIGR03136 271 YQNLLEKTLTYGSTLFLGLVLGVLCEASTLLDP 303 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccHHhhCCh
Confidence 666555544444443444678888776655443
No 121
>COG2855 Predicted membrane protein [Function unknown]
Probab=75.33 E-value=7 Score=41.51 Aligned_cols=56 Identities=18% Similarity=0.286 Sum_probs=47.8
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhhhcChHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 036516 20 FPMGSRYVLRTFAEFGMILHAFVLGVQIDLGLVKHIRKRAVIIGITSTLLPLVFGL 75 (709)
Q Consensus 20 fp~~~~~~l~~la~iGli~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~ip~~~g~ 75 (709)
.|++..+.+..++.+-+++=|.-.|+++|++.++|.+.|.+..+..+++.-.+.++
T Consensus 272 iP~~~~~~~~~lst~ll~~aMaAlGL~t~i~~l~~~G~kpl~la~~~~~~l~~~~l 327 (334)
T COG2855 272 IPAEVVSALVTLSTFLLAMAMAALGLTTHIKALKKAGGKPLLLALLLWVFLVVGGL 327 (334)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHcCccHHHHHHHHHHHHHHHHH
Confidence 47777889999999999999999999999999999999999988877665444443
No 122
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=75.04 E-value=20 Score=39.25 Aligned_cols=106 Identities=14% Similarity=0.067 Sum_probs=58.3
Q ss_pred HHHHHHHHhcCCCCChhhHHHhhhhhhhHhhhhHHHHHHhhhccc-cccccchhhHHHHHHHHHHHHHHHHHHHHhHhhh
Q 036516 224 LTAFFFGLCLPDGPPLGTQLVQKLDFFTSGFLLPVFCAISGIRME-LYLINEKSFIKIEFIILMSYLGKFTGVMVPSLFF 302 (709)
Q Consensus 224 lGaf~~Gl~ip~~~~~~~~l~~kl~~~~~~~flPlFF~~~G~~~d-~~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~ 302 (709)
+...++|....+..-+.++-.+.+..++..+++|.+.+..=.+.+ ...+. .++...+...+..+.=++.+++..+++
T Consensus 10 ~~ii~~G~~~~~~~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (385)
T PF03547_consen 10 FLIILLGYLLGRFGILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLL--SLWFIPVFAFIIFILGLLLGFLLSRLF 87 (385)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhh--hhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333445555554444566667888899999999998665544433 33232 233333333333333345556666767
Q ss_pred CCCHHHH--HHHHHHhhhhhhHHHHHHHhhh
Q 036516 303 GMSFLKA--SCLALIMCCRGIAEIAVYCMWK 331 (709)
Q Consensus 303 ~~~~~~~--~~lg~~m~~kG~~~l~~~~~~~ 331 (709)
+.+.++. +.++...+.-|.+.+-+...-+
T Consensus 88 ~~~~~~~~~~~~~~~~~N~~~lglpi~~~l~ 118 (385)
T PF03547_consen 88 RLPKEWRGVFVLAASFGNTGFLGLPILQALF 118 (385)
T ss_pred CCCcccceEEEecccCCcchhhHHHHHHHHh
Confidence 7666553 3334444555666555554433
No 123
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=74.21 E-value=14 Score=38.60 Aligned_cols=117 Identities=11% Similarity=0.078 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHHHHhchhHhHHHHHHHHhcCCCCC-h--hhHHHhhhhhhhHhhhhHHHHHHhhhccccccccch-h
Q 036516 201 FIITICIVLVTTILGTLVGQNSILTAFFFGLCLPDGPP-L--GTQLVQKLDFFTSGFLLPVFCAISGIRMELYLINEK-S 276 (709)
Q Consensus 201 ~~~vl~~~l~~~~~~~~~G~~~~lGaf~~Gl~ip~~~~-~--~~~l~~kl~~~~~~~flPlFF~~~G~~~d~~~l~~~-~ 276 (709)
...-+.++|+.+.+++.+.++|..|-.++|.+.....| + .+.+...+..++ .-+....+|+++.+..+... .
T Consensus 11 iv~gl~lAFl~G~lA~rlrlsPLVGyL~AGv~~gpftpGFvad~~La~~LAelG----ViLLmFgvGLhfslkdLLavk~ 86 (408)
T COG4651 11 IVGGLVLAFLLGALANRLRLSPLVGYLLAGVLAGPFTPGFVADQTLAPELAELG----VILLMFGVGLHFSLKDLLAVKA 86 (408)
T ss_pred HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCCCCcccchhHHHHHHHhh----HHHHHHhcchheeHHHHhhHHH
Confidence 34556778899999999999999999999999864322 2 245555565553 22344568999988776543 3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHhhhCCCHHHHHHHHHHhhhhhhHH
Q 036516 277 FIKIEFIILMSYLGKFTGVMVPSLFFGMSFLKASCLALIMCCRGIAE 323 (709)
Q Consensus 277 ~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~ 323 (709)
|.+-..+.-++ .-..-.+..++..++++...+..|+.++.-..+-
T Consensus 87 iAipgAl~qia--~at~lg~gL~~~lgws~~~glvfGlaLS~aSTVv 131 (408)
T COG4651 87 IAIPGALAQIA--LATLLGMGLSSLLGWSFGTGIVFGLALSVASTVV 131 (408)
T ss_pred HhcchHHHHHH--HHHHHHhHHHHHcCCCcccceeeeehhhhHHHHH
Confidence 33211111111 0111122345667888888888888887776653
No 124
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=74.08 E-value=6.6 Score=41.48 Aligned_cols=56 Identities=18% Similarity=0.240 Sum_probs=41.1
Q ss_pred eEEEEeeccCcChHHHHHHHHHHhcCCCe-EEEEEEeeecCCCCCCCCCCCchhHHHHHHHHHhhhc
Q 036516 553 YHIVMLFIGGADDREALAYSRRMAEHPNT-SLTVVWFITTDQNRPSTEMPDDHELDNQAFDEFKDSM 618 (709)
Q Consensus 553 ~~V~~~f~Gg~ddreAl~~a~rma~~~~~-~ltvl~v~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 618 (709)
.+||+.|.||+|+-..|.++.+.|+..+- +++|+++.-+.+ ...--++++|....+
T Consensus 28 ~~VcVSFSGGKDS~lmLhL~~~~ar~~~~~~i~VlfiD~E~Q----------Ys~TidyV~em~~~~ 84 (407)
T COG3969 28 PRVCVSFSGGKDSGLMLHLVAEVARENGRDKISVLFIDWEAQ----------YSCTIDYVQEMRESY 84 (407)
T ss_pred CeEEEEecCCCchhHHHHHHHHHHHHhCCCceEEEEEcchhh----------hhhHHHHHHHHHhcc
Confidence 37999999999999999999999977766 899988643222 223334666666543
No 125
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=72.88 E-value=61 Score=34.54 Aligned_cols=115 Identities=11% Similarity=0.108 Sum_probs=68.5
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhhhcChHHHHhhhhhHHHHHHHHH-HHHHHHHHHHHHHHhhhccCCchhhHHHHHH
Q 036516 20 FPMGSRYVLRTFAEFGMILHAFVLGVQIDLGLVKHIRKRAVIIGITST-LLPLVFGLSSFRIVQRISHLDDETASSIAAS 98 (709)
Q Consensus 20 fp~~~~~~l~~la~iGli~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~-~ip~~~g~~~~~~l~~~~~~~~~~~~~~l~l 98 (709)
.|.--.+.++.+++...-+-||..|+.++.+.+++..|..+.....-. +.|.+. +.++.++.- + ....-.
T Consensus 201 lP~~l~~~l~~lg~~~~plaLl~lG~~l~~~~~~~~~~~~~~~~~~klil~P~i~-~~~~~~~~l----~----~~~~~~ 271 (321)
T TIGR00946 201 MPGLILKSISILSGATTPMALFSLGLALSPRKIKLGVRDAILALIVRFLVQPAVM-AGISKLIGL----R----GLELSV 271 (321)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhccChHHHHHHHHHHHHHHHHHH-HHHHHHhCC----C----hHHHHH
Confidence 465567899999999999999999999999888777666665555544 455544 344433321 1 122333
Q ss_pred HHHHhhchHHHHHHHHHHhccccChhHHHHHHHHHHHHHHHHHHHHHH
Q 036516 99 VVVNSMTSLVVITGLLKELKMLNSELGRLAASITIVSHIFGWSASMIL 146 (709)
Q Consensus 99 ~~~ls~Ts~~vv~~iL~el~ll~s~~G~lals~a~v~D~~~~~ll~i~ 146 (709)
....+.+..++.+.++.+.--.+ .+.+-+...++-+++.+.+.+.
T Consensus 272 ~vl~aa~P~a~~~~i~A~~y~~~---~~~aa~~v~~sT~ls~~tlp~~ 316 (321)
T TIGR00946 272 AILQAALPGGAVAAVLATEYEVD---VELASTAVTLSTVLSLISLPLF 316 (321)
T ss_pred HHHHHcCChhhHHHHHHHHhCCC---HHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555554432122 2555555555555555554443
No 126
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=72.17 E-value=32 Score=33.05 Aligned_cols=37 Identities=16% Similarity=0.205 Sum_probs=31.6
Q ss_pred EEEEeeccCcChHHHHHHHHHHhcCC--CeEEEEEEeee
Q 036516 554 HIVMLFIGGADDREALAYSRRMAEHP--NTSLTVVWFIT 590 (709)
Q Consensus 554 ~V~~~f~Gg~ddreAl~~a~rma~~~--~~~ltvl~v~~ 590 (709)
||++.+.||.|+--++.++.+..++. +.+++.+++..
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~~~~~~~~~~~d~ 39 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYPYGFELEALTVDE 39 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEEEEC
Confidence 48899999999999999998887655 77888888875
No 127
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=71.51 E-value=19 Score=38.99 Aligned_cols=117 Identities=16% Similarity=0.138 Sum_probs=64.2
Q ss_pred hhhhHhhhhHHHHHHhhhccccccccchh---hHHHHHHHHHHHHHHHHHHHHhHhhhCCCHHHHHHHHHHhhhhhhH-H
Q 036516 248 DFFTSGFLLPVFCAISGIRMELYLINEKS---FIKIEFIILMSYLGKFTGVMVPSLFFGMSFLKASCLALIMCCRGIA-E 323 (709)
Q Consensus 248 ~~~~~~~flPlFF~~~G~~~d~~~l~~~~---~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~-~ 323 (709)
+....+.|+-+||+++|+.-++..+.... .+.......+...--+++. ..+.+.+.++.-++..|-+--.-|+- +
T Consensus 64 d~~l~~~fmliFFttiglsa~~~~lkkgGk~l~if~~~a~~l~~~Qn~igi-~la~~lgidpl~gllagsIsl~GGHGta 142 (404)
T COG0786 64 DTSLQDVFMLIFFATIGLSASFKLLKKGGKKLAIFLATAAGLAVLQNFIGI-GLAKLLGLDPLIGLLAGSISLVGGHGTA 142 (404)
T ss_pred CcccccHHHHHHHHHhccccchhHHHhcChhHHHHHHHHHHHHHHHHHHHH-HHHHHcCccHHHHHHhcceeecCCCchH
Confidence 33447788999999999999998876541 1112222223333344444 44566677776666664433334433 3
Q ss_pred HHHHHhhhccCccchhHHHH--HHHHHHHHHHHHHHHHHhhcCc
Q 036516 324 IAVYCMWKDRKIITNQIFAI--MITNMVIITGISTTIVGYLYDP 365 (709)
Q Consensus 324 l~~~~~~~~~~~i~~~~~~~--lv~~~ll~t~i~~plv~~ly~p 365 (709)
.+......+.|.-+.....+ -.+-.+.-..+.+|+.+++.|+
T Consensus 143 AA~~~~f~~~G~~~A~~va~A~ATfGlv~GgliGgpva~~li~k 186 (404)
T COG0786 143 AAWGPTFEDLGAEGATEVAMASATFGLVAGGLIGGPVARWLIKK 186 (404)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHHHhHhcCcHHHHHHHHh
Confidence 34455556666544332221 2222233344467888887643
No 128
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=71.41 E-value=11 Score=39.92 Aligned_cols=40 Identities=20% Similarity=0.140 Sum_probs=31.7
Q ss_pred EEEeeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCC
Q 036516 555 IVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFITTDQN 594 (709)
Q Consensus 555 V~~~f~Gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~ 594 (709)
+++.|.||+|+--.|.++.+.....+..+.++++.+..+|
T Consensus 40 ~~v~~SgGKDS~VlLhLa~kaf~~~~~~~pvl~VDTG~~F 79 (312)
T PRK12563 40 PVMLYSIGKDSVVMLHLAMKAFRPTRPPFPLLHVDTTWKF 79 (312)
T ss_pred cEEEecCChHHHHHHHHHHHhhcccCCCeeEEEeCCCCCC
Confidence 5789999999999999999887554556788988765444
No 129
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=70.83 E-value=36 Score=37.55 Aligned_cols=111 Identities=11% Similarity=0.156 Sum_probs=60.6
Q ss_pred HHHHHhchhHhHHHHHHHHhcCCCCChhh-HHH-hhhhhhhHhhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHH
Q 036516 213 ILGTLVGQNSILTAFFFGLCLPDGPPLGT-QLV-QKLDFFTSGFLLPVFCAISGIRMELYLINEKSFIKIEFIILMSYLG 290 (709)
Q Consensus 213 ~~~~~~G~~~~lGaf~~Gl~ip~~~~~~~-~l~-~kl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~ii~~~~~~ 290 (709)
.++..+|....+=-...|++...++ ++. ... ..+..++..+-+.+...-.|++++++......+....+-.+...+.
T Consensus 24 ~~ssrfGvP~LllFl~iGm~aG~dG-lg~I~fdNy~~Ay~vg~lALaiILfdgG~~T~lss~r~a~~palsLATlGVl~T 102 (574)
T COG3263 24 LISSRFGVPLLLLFLSIGMLAGVDG-LGGIEFDNYPFAYMVGNLALAIILFDGGFGTQLSSFRVAAGPALSLATLGVLIT 102 (574)
T ss_pred HHHHHcCchHHHHHHHHHHHcCCCc-ccccccCccHHHHHHHHHHHHHHhhcCccCCcHHHHHHHhhhhHHHHHHHHHHH
Confidence 3344445444444444555555432 110 000 1233444555566666677999998766543333222222223333
Q ss_pred HHHHHHHhHhhhCCCHHHHHHHHHHhhhhhhHHH
Q 036516 291 KFTGVMVPSLFFGMSFLKASCLALIMCCRGIAEI 324 (709)
Q Consensus 291 K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~l 324 (709)
-.+....+.+.++.+|-|++.+|.+....-..++
T Consensus 103 s~Ltg~aA~~ll~l~wle~~LiGAiVgSTDAAAV 136 (574)
T COG3263 103 SGLTGVAAAYLLNLDWLEGLLIGAIVGSTDAAAV 136 (574)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHhhccccHHHH
Confidence 4455556678889999999999998766544443
No 130
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=68.37 E-value=9.7 Score=42.66 Aligned_cols=135 Identities=16% Similarity=0.207 Sum_probs=73.1
Q ss_pred hhHHHHHHHhhcCccEEEec---CCccccCCcceeccchhhHHHHHHHhhcCCccEEEEEecCC-CCCC--CcccCCCcc
Q 036516 479 MHDDVCTLALDKRVVIIIVP---FHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGILVHRGQ-NKSN--RPVYTGELL 552 (709)
Q Consensus 479 ~~~dI~~~A~e~~~dlII~g---~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIlvdrg~-~~~~--~~~~~~~~~ 552 (709)
-.++||++|+++++|+|++| ||...... .+-...++.+-+.-+-.-||..=++-|.+. +... ..+--.+..
T Consensus 40 tFeEIl~iA~e~~VDmiLlGGDLFHeNkPSr---~~L~~~i~lLRryClgdkP~~le~lSD~s~~f~~~~f~~VNY~DpN 116 (646)
T KOG2310|consen 40 TFEEILEIAQENDVDMILLGGDLFHENKPSR---KTLHRCLELLRRYCLGDKPVQLEILSDQSVNFGNSVFGNVNYEDPN 116 (646)
T ss_pred HHHHHHHHHHhcCCcEEEecCcccccCCccH---HHHHHHHHHHHHHccCCCceeeEEecccceeccccccceecccCCC
Confidence 45789999999999999999 45543221 111334666666667788999999888765 2111 001011122
Q ss_pred eEEEEeecc--CcChH-------HHHH------HHHHHhcCCCe-EEEEEEeeecCCCCCCCCCCCchhHHHHHHHHHhh
Q 036516 553 YHIVMLFIG--GADDR-------EALA------YSRRMAEHPNT-SLTVVWFITTDQNRPSTEMPDDHELDNQAFDEFKD 616 (709)
Q Consensus 553 ~~V~~~f~G--g~ddr-------eAl~------~a~rma~~~~~-~ltvl~v~~~~~~~~~~~~~~~~~~d~~~l~~~~~ 616 (709)
.+|.+|.|+ |.||. -||. +..-+-+..++ ++.|.-++-.+..+...-.......|+.+..-|+.
T Consensus 117 lNIsIPVFsIHGNHDDpSG~~~lsalDIL~~~GLVNyFGk~~~id~I~vsPiLlqKG~tklALYGLg~irDeRL~R~Fk~ 196 (646)
T KOG2310|consen 117 LNISIPVFSIHGNHDDPSGDGRLSALDILSAAGLVNYFGKVSEIDKIDVSPILLQKGSTKLALYGLGSIRDERLYRMFKN 196 (646)
T ss_pred cceeeeeEEeecCCCCCccccccchHHHHHhcchhhhhccccCcceEEEEeeeeccCceeEEEeeccccchHHHHHHHHh
Confidence 467777664 66552 2222 23334444444 66666665533320000011223456666666664
No 131
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=67.39 E-value=1.2e+02 Score=32.77 Aligned_cols=125 Identities=14% Similarity=0.080 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHHHHHHhchh--HhHH-HHHHHHhcCCCCChhhHHHhhhhhhhHhhhhHHHHHHhhhccccccccch-
Q 036516 200 HFIITICIVLVTTILGTLVGQN--SILT-AFFFGLCLPDGPPLGTQLVQKLDFFTSGFLLPVFCAISGIRMELYLINEK- 275 (709)
Q Consensus 200 ~~~~vl~~~l~~~~~~~~~G~~--~~lG-af~~Gl~ip~~~~~~~~l~~kl~~~~~~~flPlFF~~~G~~~d~~~l~~~- 275 (709)
+....+.+.+..+++.+..|+. .++| +.++|.+..-.+ ..-.+-..+ ..+-.-+.-..+|..+..+.+...
T Consensus 10 ~w~i~l~ls~~~g~l~~~~~vPa~~mlG~~l~a~~v~~~~~-~~l~~P~~l----~~~~q~ilG~~ig~~~t~s~l~~l~ 84 (352)
T COG3180 10 QWFILLLLSLLGGWLLTLLHVPAAWMLGAPLLAGIVAGLRG-LTLPLPRGL----FKAGQVILGIMIGASLTPSVLDTLK 84 (352)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcc-ccccCChHH----HHHHHHHHHHHHhhhcCHHHHHHHH
Confidence 3455566666778888887774 4788 666666665321 111111111 111222344566777776666533
Q ss_pred -hhHHHHHHHHHHHHHHHHHHHHhHhhhCCCHHHHHHHHHHhhhhhhHHHHHHHhhhccC
Q 036516 276 -SFIKIEFIILMSYLGKFTGVMVPSLFFGMSFLKASCLALIMCCRGIAEIAVYCMWKDRK 334 (709)
Q Consensus 276 -~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~l~~~~~~~~~~ 334 (709)
.|....++.++.+..-++..++..|+.+.|..+++. ...|-|..++.... .|.|
T Consensus 85 ~~w~~~~~v~~~tl~~s~l~g~ll~r~~~~~~~Ta~~---gs~PGgas~m~~iA--~d~g 139 (352)
T COG3180 85 SNWPIVLVVLLLTLLSSILLGWLLKRFSILPGNTAFL---GSSPGGASAMVSIA--QDYG 139 (352)
T ss_pred HcccHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhH---hcCCchHHHHHHHH--HHhC
Confidence 476677777777788888889999988888777754 46788888776554 4444
No 132
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=65.07 E-value=56 Score=34.93 Aligned_cols=103 Identities=12% Similarity=0.134 Sum_probs=64.6
Q ss_pred hHHHHHHHHhcCCCCChhhHHHhhhhhhhHhhhhHHHHHHhhhccccccccch-h-hHHHHHHHHHHHHHHHHHHHHhHh
Q 036516 223 ILTAFFFGLCLPDGPPLGTQLVQKLDFFTSGFLLPVFCAISGIRMELYLINEK-S-FIKIEFIILMSYLGKFTGVMVPSL 300 (709)
Q Consensus 223 ~lGaf~~Gl~ip~~~~~~~~l~~kl~~~~~~~flPlFF~~~G~~~d~~~l~~~-~-~~~~~~ii~~~~~~K~~~~~l~~~ 300 (709)
++||.+++.+.....+..-..-..+ ......+--..+|.+++.+.+..- . |....++.+.....-.+..++..|
T Consensus 2 llG~~ia~~~~~~~~~~~~~~p~~~----r~~~q~ilG~~iG~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r 77 (318)
T PF05145_consen 2 LLGPMIAVIIAALFGPLPLRVPRRL----RNAGQAILGVSIGSSFTPEVLAQLASWWPPMLLLLVVTLLLSLVGAWLLRR 77 (318)
T ss_pred chHHHHHHHHHHHhCCCccCCCHHH----HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666654332222222222 233445666788999998776543 3 333455556666667788888899
Q ss_pred hhCCCHHHHHHHHHHhhhhhhHHHHHHHhhhccC
Q 036516 301 FFGMSFLKASCLALIMCCRGIAEIAVYCMWKDRK 334 (709)
Q Consensus 301 ~~~~~~~~~~~lg~~m~~kG~~~l~~~~~~~~~~ 334 (709)
..+++..+++.- ..|-|..+++... .+.|
T Consensus 78 ~~~~d~~TA~~~---~~PGg~s~m~~la--~~~g 106 (318)
T PF05145_consen 78 ISGLDRATAFFA---SMPGGLSEMVALA--EEYG 106 (318)
T ss_pred HcCCChhHHHHH---cCCccHHHHHHHH--HHcC
Confidence 999998888765 4588888887655 4444
No 133
>COG3329 Predicted permease [General function prediction only]
Probab=64.89 E-value=1.6e+02 Score=30.94 Aligned_cols=118 Identities=13% Similarity=0.150 Sum_probs=67.5
Q ss_pred hHhHHHHHHHHhcCCCC---ChhhHHHhhhhhhhHhhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHH
Q 036516 221 NSILTAFFFGLCLPDGP---PLGTQLVQKLDFFTSGFLLPVFCAISGIRMELYLINEKSFIKIEFIILMSYLGKFTGVMV 297 (709)
Q Consensus 221 ~~~lGaf~~Gl~ip~~~---~~~~~l~~kl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~ii~~~~~~K~~~~~l 297 (709)
++.+.-|+.|++++... .+-+.+.+-+ +-.++--.-..-|+.+.-+.+... +..++.-+.+.++.-+++.++
T Consensus 17 sP~llFf~~Gmlia~~ksdl~iP~~i~~~l----slyLL~aIG~kGGveir~snl~a~-v~~~~~~~aL~~li~~ia~f~ 91 (372)
T COG3329 17 SPTLLFFILGMLIAAFKSDLEIPEAIYQAL----SLYLLLAIGFKGGVEIRNSNLTAM-VLPVALGVALGFLIVFIAYFL 91 (372)
T ss_pred cchHHHHHHHHHHHHHhccccCchHHHHHH----HHHHHHHHhcccceeeecCCcchh-HHHHHHHHHHHHHHHHHHHHH
Confidence 67777888888777421 1112222222 111111111223444443333322 333444455566667788888
Q ss_pred hHhhhCCCHHHHHHHHHHhhhhhhHHHHHHHhhhccCccchhHHHH
Q 036516 298 PSLFFGMSFLKASCLALIMCCRGIAEIAVYCMWKDRKIITNQIFAI 343 (709)
Q Consensus 298 ~~~~~~~~~~~~~~lg~~m~~kG~~~l~~~~~~~~~~~i~~~~~~~ 343 (709)
..++.|++..|+...+-.-..-..+.++.+..-++..-+.-+-|..
T Consensus 92 l~kl~~vdtvdaaA~ag~yGsvS~~Tfaaa~t~Lee~giayeaym~ 137 (372)
T COG3329 92 LRKLPKVDTVDAAATAGTYGSVSAVTFAAAVTFLEESGIAYEAYMP 137 (372)
T ss_pred HHHccccchHHHHHHHhhccchhHHHHHHHHHHHHHcCccHHHHHH
Confidence 8888899999999999877777777777766666554455555543
No 134
>PRK04972 putative transporter; Provisional
Probab=64.64 E-value=28 Score=40.29 Aligned_cols=84 Identities=17% Similarity=0.239 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcChHHH---HhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhhHHHHHHH-H
Q 036516 25 RYVLRTFAEFGMILHAFVLGVQIDLGLV---KHIRKRAVIIGITSTLLPLVFGLSSFRIVQRISHLDDETASSIAASV-V 100 (709)
Q Consensus 25 ~~~l~~la~iGli~~lF~~Gle~d~~~l---~~~~~~~~~i~~~~~~ip~~~g~~~~~~l~~~~~~~~~~~~~~l~l~-~ 100 (709)
......+.++|+.+|+..+|+.--.+.+ ++.+.+.+.+|.+-.++|.+.++.+++++.+.. ....+| +
T Consensus 438 ~~a~~~l~~~GL~lFla~vGl~aG~~f~~~~~~~g~~~~~~g~~~t~~~~~~~~~~~~~~~k~~--------~~~~~G~~ 509 (558)
T PRK04972 438 QGALNMVKEFGLMVFMAGVGLSAGSGINNGLGAVGGQMLIAGLIVSLVPVVICFLFGAYVLRMN--------RALLFGAI 509 (558)
T ss_pred HHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--------HHHHHHHH
Confidence 4567789999999999999998776544 555667777778888888888888886665543 224444 4
Q ss_pred HHhhchHHHHHHHHHH
Q 036516 101 VNSMTSLVVITGLLKE 116 (709)
Q Consensus 101 ~ls~Ts~~vv~~iL~e 116 (709)
+=+.|++|.+.-..+.
T Consensus 510 aG~~t~~~~l~~~~~~ 525 (558)
T PRK04972 510 MGARTCAPAMEIISDT 525 (558)
T ss_pred hCCCCCcHHHHHHHhh
Confidence 4567888877665443
No 135
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=64.44 E-value=61 Score=34.32 Aligned_cols=50 Identities=22% Similarity=0.420 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhhhcChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 036516 32 AEFGMILHAFVLGVQIDLGLVKHIRKRAVIIGITSTLLPLVFGLSSFRIV 81 (709)
Q Consensus 32 a~iGli~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~ip~~~g~~~~~~l 81 (709)
-.+++.++.|..|.++|++.+.+.|.+.+.+++..+.+.+.+++.+..++
T Consensus 194 i~f~I~f~~f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~~~~i~rll 243 (312)
T PRK12460 194 GPLLIPFFAFALGAGINLSMLLQAGLAGILLGVLVTIVTGFFNIFADRLV 243 (312)
T ss_pred ceEeHHHHHHHhcCCeeHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34488899999999999999999999999999888888888877777666
No 136
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=64.28 E-value=19 Score=34.16 Aligned_cols=82 Identities=20% Similarity=0.205 Sum_probs=46.3
Q ss_pred CcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCCCCCCCCchhHHHHHHHHHhhhcCCCcEEEEEEe-ec--ChhhHHH
Q 036516 562 GADDREALAYSRRMAEHPNTSLTVVWFITTDQNRPSTEMPDDHELDNQAFDEFKDSMVGNKIIFREEI-VK--DGIGTTQ 638 (709)
Q Consensus 562 g~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~v~y~e~~-v~--~g~~~~~ 638 (709)
.+.|+|+++.|+++++..+.+++++-+-+ .++ .++.+++....+.-+++...+-- .+ +.+...+
T Consensus 14 ~~~~~e~l~~A~~La~~~g~~v~av~~G~--------~~~-----~~~~l~~~l~~~G~d~v~~~~~~~~~~~~~~~~a~ 80 (164)
T PF01012_consen 14 NPVSLEALEAARRLAEALGGEVTAVVLGP--------AEE-----AAEALRKALAKYGADKVYHIDDPALAEYDPEAYAD 80 (164)
T ss_dssp -HHHHHHHHHHHHHHHCTTSEEEEEEEET--------CCC-----HHHHHHHHHHSTTESEEEEEE-GGGTTC-HHHHHH
T ss_pred CHHHHHHHHHHHHHHhhcCCeEEEEEEec--------chh-----hHHHHhhhhhhcCCcEEEEecCccccccCHHHHHH
Confidence 58899999999999999999999998642 011 11222332222221234332221 11 2333555
Q ss_pred HHHhhh--cCCcEEEEecCC
Q 036516 639 VIQAFA--ETFDLFIVGKNH 656 (709)
Q Consensus 639 ~i~~~~--~~~DLiiVG~~~ 656 (709)
++.+.. .++|++++|.+.
T Consensus 81 ~l~~~~~~~~~~lVl~~~t~ 100 (164)
T PF01012_consen 81 ALAELIKEEGPDLVLFGSTS 100 (164)
T ss_dssp HHHHHHHHHT-SEEEEESSH
T ss_pred HHHHHHHhcCCCEEEEcCcC
Confidence 555443 469999999875
No 137
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=64.24 E-value=22 Score=35.75 Aligned_cols=64 Identities=16% Similarity=0.215 Sum_probs=50.3
Q ss_pred EEEEEEEEccCC-ChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEEEec
Q 036516 466 VVQHFTTIAPYA-TMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGILVHR 537 (709)
Q Consensus 466 ~v~~~~~vs~~~-~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIlvdr 537 (709)
...+++.++|.+ ...++|.+.+.+-+.|.|++|- + +|. +......+.+++-++..-||-++...
T Consensus 15 ~~~H~tliDP~k~~~~~ei~~~~~~~GTDaImIGG--S---~gv---t~~~~~~~v~~ik~~~~lPvilfP~~ 79 (240)
T COG1646 15 GKRHLTLIDPDKTEEADEIAEAAAEAGTDAIMIGG--S---DGV---TEENVDNVVEAIKERTDLPVILFPGS 79 (240)
T ss_pred cceEEEEeCcccccccHHHHHHHHHcCCCEEEECC--c---ccc---cHHHHHHHHHHHHhhcCCCEEEecCC
Confidence 357789999999 9999999999999999999992 2 222 22247788888888999998776533
No 138
>PRK10711 hypothetical protein; Provisional
Probab=64.21 E-value=1.7e+02 Score=29.71 Aligned_cols=82 Identities=10% Similarity=0.004 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHhhhCCCHHHHHHHHHHhhhhhhHHHHHHHhhhccCccchhHHHHHHHHHHHHHHHHH
Q 036516 277 FIKIEFIILMSYLGKFTGVMVPSLFFGMSFLKASCLALIMCCRGIAEIAVYCMWKDRKIITNQIFAIMITNMVIITGIST 356 (709)
Q Consensus 277 ~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~l~~~~~~~~~~~i~~~~~~~lv~~~ll~t~i~~ 356 (709)
|..+.+-+.++.+.-++++++.++.++.+..-. ..|.+|....=+...+..+.|-+.+-+-..++++-++-..+.+
T Consensus 88 ~~~I~~~~~vG~~v~i~s~~~l~~~lg~~~~~~----~Sl~pkSVTtPIAm~is~~iGG~~sLta~~ViitGi~Ga~~g~ 163 (231)
T PRK10711 88 WKSIISICFIGSVVAMVTGTAVALWMGATPEIA----ASILPKSVTTPIAMAVGGSIGGIPAISAVCVIFVGILGAVFGH 163 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHH----HHHhhhhhhHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHH
Confidence 444444455566667777888888888876532 3467999988888888877776654444444555556556666
Q ss_pred HHHHhh
Q 036516 357 TIVGYL 362 (709)
Q Consensus 357 plv~~l 362 (709)
++++++
T Consensus 164 ~llk~~ 169 (231)
T PRK10711 164 TLLNAM 169 (231)
T ss_pred HHHHHc
Confidence 776663
No 139
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=63.73 E-value=30 Score=31.93 Aligned_cols=60 Identities=15% Similarity=0.150 Sum_probs=46.4
Q ss_pred CChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcC-CccEEEEEecCC
Q 036516 477 ATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKA-PCSVGILVHRGQ 539 (709)
Q Consensus 477 ~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~a-pCsVgIlvdrg~ 539 (709)
....+.+.+++++++++.||+|...+. ||.........+.+.+++-++. ++|| .++|...
T Consensus 37 ~~~~~~l~~li~~~~i~~iVvGlP~~~--~G~~~~~~~~v~~f~~~L~~~~~~ipV-~~~DEr~ 97 (135)
T PF03652_consen 37 EKDIEELKKLIEEYQIDGIVVGLPLNM--DGSESEQARRVRKFAEELKKRFPGIPV-ILVDERL 97 (135)
T ss_dssp CCCHHHHHHHHHHCCECEEEEEEEBBC--TSSC-CCHHHHHHHHHHHHHHH-TSEE-EEEECSC
T ss_pred chHHHHHHHHHHHhCCCEEEEeCCccc--CCCccHHHHHHHHHHHHHHHhcCCCcE-EEECCCh
Confidence 688999999999999999999987554 4543333446788888988887 9998 5566654
No 140
>TIGR00808 malonate_madM malonate transporter, MadM subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=62.91 E-value=20 Score=35.16 Aligned_cols=61 Identities=18% Similarity=0.272 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHH-------HHHHHHhhhcChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 036516 25 RYVLRTFAEFGMI-------LHAFVLGVQIDLGLVKHIRKRAVIIGITSTLLPLVFGLSSFRIVQRIS 85 (709)
Q Consensus 25 ~~~l~~la~iGli-------~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~ip~~~g~~~~~~l~~~~ 85 (709)
...+..++.+|++ |-.--...|.|.+++||.+.....--+.+.++||+.|..+++.+++..
T Consensus 67 laDi~lfsGiglmGGaMlRDfAIvaTAf~v~~~e~kkaG~~G~vsL~~G~v~~F~~Ga~vA~afGY~D 134 (254)
T TIGR00808 67 LADIAIFGGFGLMGGAMLRDLAIVATAFEVDVKEVKKAGKVGMVALLLGCVIPFVIGAMVAWAFGYRD 134 (254)
T ss_pred cchhhhhcchhhhhhHHHHHHHHHHHhhcCcHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4455556666554 223345789999999999998887778899999999999999998764
No 141
>COG1883 OadB Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit [Energy production and conversion]
Probab=62.67 E-value=2.8 Score=43.04 Aligned_cols=130 Identities=15% Similarity=0.116 Sum_probs=73.6
Q ss_pred hHhhhhHHHHHHhhhccccccccch--hhHHHHHHHHHHHHHHHHHHHHhHhhhCCCHHHHHHHHHHhhhhhhHHHHHHH
Q 036516 251 TSGFLLPVFCAISGIRMELYLINEK--SFIKIEFIILMSYLGKFTGVMVPSLFFGMSFLKASCLALIMCCRGIAEIAVYC 328 (709)
Q Consensus 251 ~~~~flPlFF~~~G~~~d~~~l~~~--~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~l~~~~ 328 (709)
.++++=++.|.-+|..+|++-+... ++++.. .+=+ -+..+++.+...++..+|+..+|.+=..-|-.++.+.+
T Consensus 82 ~~~i~PllIFmGvGAmTDFgpllanPktllLGa----AAQ~-GIF~t~~~A~~lgf~~~eAasIgIIGGADGPTaIy~t~ 156 (375)
T COG1883 82 GSGIFPLLIFMGVGAMTDFGPLLANPKTLLLGA----AAQF-GIFATVFGALALGFTPKEAASIGIIGGADGPTAIYLTN 156 (375)
T ss_pred ccCcccHHHHhccchhcccchhhcCcHHHHhhh----HHHh-chHHHHHHHHHhCCCHhhhhheeeeccCCCCceEEecc
Confidence 4677888889999999999876533 332211 1111 12345556677789999999999876666666554432
Q ss_pred hhhccCccchhHHHHHHHHHHHHHHHHHHHHHhhcCccccccc-hhhcccccCCCccceeEEEe
Q 036516 329 MWKDRKIITNQIFAIMITNMVIITGISTTIVGYLYDPSRRYKL-DVRRAICKSKQNSLRILVCI 391 (709)
Q Consensus 329 ~~~~~~~i~~~~~~~lv~~~ll~t~i~~plv~~ly~p~~~~~~-~~~r~i~~~~~~e~riLv~v 391 (709)
.. .-.++..-...+--.|+++ -++-||+.|.+-.+++|-.+ .+-|+..+ ..||+.|+
T Consensus 157 ~L-AP~Ll~~iAvAAYSYMALV-PiIQPpimkaLTt~~ERkIrM~qlR~Vsk----~EkIlFPi 214 (375)
T COG1883 157 KL-APELLGAIAVAAYSYMALV-PIIQPPIMKALTTKEERKIRMTQLRTVSK----REKILFPI 214 (375)
T ss_pred cc-CHHHHHHHHHHHHHHHHHh-hhcccHHHHHhcCHHHHHhhhhccccccc----hhhhhhhH
Confidence 21 1112222222222334444 66788999988766544222 22233211 46677664
No 142
>COG5505 Predicted integral membrane protein [Function unknown]
Probab=62.60 E-value=2.1e+02 Score=30.21 Aligned_cols=298 Identities=14% Similarity=0.060 Sum_probs=137.3
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhhhcChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhhHHHHHHH
Q 036516 20 FPMGSRYVLRTFAEFGMILHAFVLGVQIDLGLVKHIRKRAVIIGITSTLLPLVFGLSSFRIVQRISHLDDETASSIAASV 99 (709)
Q Consensus 20 fp~~~~~~l~~la~iGli~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~ip~~~g~~~~~~l~~~~~~~~~~~~~~l~l~ 99 (709)
|| ...+...++-+-=+=...++.=++.|.+++.|.++|-+.+=+.. .+..++|+.++|.+.+...+| .|.. +
T Consensus 51 fs-~~S~~y~~v~n~llpamI~lmLlqcd~Rki~Klg~rll~ifli~-sv~~vlGfIl~yp~~ksf~gd--~Wka----~ 122 (384)
T COG5505 51 FS-VESPVYDTVWNYLLPAMIPLMLLQCDVRKIFKLGRRLLFIFLIS-SVGTVLGFILAYPLLKSFIGD--LWKA----G 122 (384)
T ss_pred cc-ccCcHHHHHHHHHHHHHHHHHHHHccHHHHHhhcchhhHHHHHH-HHHHHHHHHHHHHHHhhhcch--HHhh----h
Confidence 45 33344555555444455566778999999999999987664443 345567777777766554321 1211 1
Q ss_pred HHHhhchHHHHHHHHHHhccccChhHHHHHHHHHHHHHHHHHHH-HHHHHHhccCCCc-cchhhHHHHHHHHHHHHHHHH
Q 036516 100 VVNSMTSLVVITGLLKELKMLNSELGRLAASITIVSHIFGWSAS-MILLSVRDSQDNL-TTIKPLYITLVVIVYYIIVIF 177 (709)
Q Consensus 100 ~~ls~Ts~~vv~~iL~el~ll~s~~G~lals~a~v~D~~~~~ll-~i~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~ 177 (709)
.+++.|-..--+..-.=.+.+ |+-.-..+++..-|.++.-++ .+.+.+......+ .+-.|--.-+....- -
T Consensus 123 gmi~gSytGGSaNmAAmqaaL--eVP~~~fsatlaaDtv~ySll~~lli~iVpy~~kw~~~tkpdesKL~A~~~-----e 195 (384)
T COG5505 123 GMISGSYTGGSANMAAMQAAL--EVPGEYFSATLAADTVMYSLLFFLLISIVPYKWKWRHYTKPDESKLKADGN-----E 195 (384)
T ss_pred hheeeeeeCCcchHHHHHhhh--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccHHHHhhhhh-----h
Confidence 222222222112211111222 233446677777777665333 2222221100000 000000000000000 0
Q ss_pred HHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHHHhchhHh---------------HHHHHHHHhcCCCCChhhH
Q 036516 178 LVRPLTMRIVSKNSEEESMNQNHFIITICIVLVTTILGTLVGQNSI---------------LTAFFFGLCLPDGPPLGTQ 242 (709)
Q Consensus 178 v~r~~~~~i~~~~~~~~~~~e~~~~~vl~~~l~~~~~~~~~G~~~~---------------lGaf~~Gl~ip~~~~~~~~ 242 (709)
.....-.| +.+|.+-....+.+...+..+.++..+|-+-. +=.=+.|+++.-. |+++-
T Consensus 196 ~a~~e~yw------Krkp~Sl~D~afl~Gislav~AVa~~Is~~l~~~s~gl~~~~gt~t~v~vsi~gLi~aLt-Pf~~l 268 (384)
T COG5505 196 GASAESYW------KRKPISLKDIAFLAGISLAVVAVAMKISGYLKSISHGLLTGLGTQTLVLVSITGLIIALT-PFERL 268 (384)
T ss_pred hhhhhhhh------hcCCccHHHHHHHhhHHHHHHHHHHHHHhhccccccccccccceeeehHHHHHHHHHHhC-ccccC
Confidence 00000000 01122222334444444444444444333221 1111334444332 23221
Q ss_pred HHhhhhhhhHhhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHhHhhhCCCHHHHHHHHHHhhhhhhH
Q 036516 243 LVQKLDFFTSGFLLPVFCAISGIRMELYLINEKSFIKIEFIILMSYLGKFTGVMVPSLFFGMSFLKASCLALIMCCRGIA 322 (709)
Q Consensus 243 l~~kl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~ 322 (709)
.-.+++ ..+++=.|++.++...|+..+....++++..+++ .+...+..+..+++++.++.+-.. +.+-|..|-.
T Consensus 269 --pgs~el-gtv~lY~~v~vias~Ad~~~i~taP~~i~~gf~i--l~~h~~v~f~~~KlF~~dL~~i~~-AslAniGG~~ 342 (384)
T COG5505 269 --PGSQEL-GTVLLYLFVVVIASPADLRLIVTAPLIILFGFII--LISHLAVSFAAGKLFRVDLEEILL-ASLANIGGPT 342 (384)
T ss_pred --Cchhhh-hHHHHHHHHHHhccchhHHHHHhhhHHHHHHHHH--HHHHHHHHHHHHHHHHhHHHHHHH-HHHhccCCcc
Confidence 112233 3455667889999999998776543333322222 234556667778888888865544 4446777777
Q ss_pred HHHHHHhhhccCccchhHHHHHHHHHHH
Q 036516 323 EIAVYCMWKDRKIITNQIFAIMITNMVI 350 (709)
Q Consensus 323 ~l~~~~~~~~~~~i~~~~~~~lv~~~ll 350 (709)
+.-+...+++...+ ..-++|.++
T Consensus 343 sAp~~A~A~nr~lv-----~~gvlmg~l 365 (384)
T COG5505 343 SAPAMAIAKNRELV-----APGVLMGTL 365 (384)
T ss_pred chhHHHhhcCchhc-----chHHHHHHH
Confidence 77776776654443 334444444
No 143
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=61.50 E-value=58 Score=30.41 Aligned_cols=36 Identities=22% Similarity=0.379 Sum_probs=27.5
Q ss_pred EEEEeeccCcChHHHHHHHHHHhcCCCeEEEEEEeee
Q 036516 554 HIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFIT 590 (709)
Q Consensus 554 ~V~~~f~Gg~ddreAl~~a~rma~~~~~~ltvl~v~~ 590 (709)
+|++.|.||+|+--.+.++.+...+. -++.++++.+
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~~~-~~~~~v~~dt 36 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALPEL-KPVPVIFLDT 36 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhcccc-cCceEEEeCC
Confidence 37899999999999998888866543 3567777655
No 144
>PRK03818 putative transporter; Validated
Probab=61.40 E-value=95 Score=36.00 Aligned_cols=82 Identities=17% Similarity=0.153 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcChHHHHh----hhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhhHHHHHHH-
Q 036516 25 RYVLRTFAEFGMILHAFVLGVQIDLGLVKH----IRKRAVIIGITSTLLPLVFGLSSFRIVQRISHLDDETASSIAASV- 99 (709)
Q Consensus 25 ~~~l~~la~iGli~~lF~~Gle~d~~~l~~----~~~~~~~i~~~~~~ip~~~g~~~~~~l~~~~~~~~~~~~~~l~l~- 99 (709)
......+.++|+.+|+..+|++--.+.+.. .+.+...+|.+-.++|.++++.+++++.+.. ....+|
T Consensus 428 ~~a~~~l~~~GL~lFla~vGl~aG~~f~~~~~~~~G~~~~~~g~~v~~~~~~~~~~~~~~~~~~~--------~~~~~G~ 499 (552)
T PRK03818 428 PSANLALRELGIVLFLAVVGLKSGGDFVDTLVNGEGLSWIGYGFLITAVPLLIVGILARMLAKMN--------YLTLCGM 499 (552)
T ss_pred HHHHHHHHHHhHHHHHHHHHhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--------HHHHHHH
Confidence 455678889999999999999888766643 3566667777777888888888876655442 234444
Q ss_pred HHHhhchHHHHHHHH
Q 036516 100 VVNSMTSLVVITGLL 114 (709)
Q Consensus 100 ~~ls~Ts~~vv~~iL 114 (709)
.+=+.|++|.+.-..
T Consensus 500 ~aG~~t~tp~l~~a~ 514 (552)
T PRK03818 500 LAGSMTDPPALAFAN 514 (552)
T ss_pred HhccCCCcHHHHHHh
Confidence 445678888876543
No 145
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=61.14 E-value=1.9e+02 Score=29.25 Aligned_cols=82 Identities=9% Similarity=0.040 Sum_probs=52.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHhhhCCCHHHHHHHHHHhhhhhhHHHHHHHhhhccCccchhHHHHHHHHHHHHHHHHH
Q 036516 277 FIKIEFIILMSYLGKFTGVMVPSLFFGMSFLKASCLALIMCCRGIAEIAVYCMWKDRKIITNQIFAIMITNMVIITGIST 356 (709)
Q Consensus 277 ~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~l~~~~~~~~~~~i~~~~~~~lv~~~ll~t~i~~ 356 (709)
|..+.+-+.++.+.-+..+++.++.+|.+.. +.. .+.+|....=+...+..+.|-..+-.-...+++-++-..+.+
T Consensus 87 ~~~Il~~~~~G~~~~~~s~~~la~~lg~~~~--i~~--Sl~pkSvTtpiAm~vs~~iGG~~sLta~~vvitGi~Ga~~g~ 162 (226)
T TIGR00659 87 WKEIILNVAVGSVIAIISGTLLALLLGLGPE--IIA--SLLPKSVTTPIAMHVSEMIGGIPAVTAVFVILTGLLGTVFGP 162 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH--HHH--HhhhHHhhHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH
Confidence 4434444445555566777888888888743 233 467999988888888877776544444445555566566666
Q ss_pred HHHHhh
Q 036516 357 TIVGYL 362 (709)
Q Consensus 357 plv~~l 362 (709)
++++++
T Consensus 163 ~ll~~~ 168 (226)
T TIGR00659 163 MVLRYF 168 (226)
T ss_pred HHHHHc
Confidence 666664
No 146
>COG0679 Predicted permeases [General function prediction only]
Probab=60.06 E-value=1.7e+02 Score=31.01 Aligned_cols=103 Identities=17% Similarity=0.130 Sum_probs=60.8
Q ss_pred HhHHHHHHHHhcCCCCChhhHHHhhhhhhhHhhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHhHhh
Q 036516 222 SILTAFFFGLCLPDGPPLGTQLVQKLDFFTSGFLLPVFCAISGIRMELYLINEKSFIKIEFIILMSYLGKFTGVMVPSLF 301 (709)
Q Consensus 222 ~~lGaf~~Gl~ip~~~~~~~~l~~kl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~ 301 (709)
+++.-...|....+.....++-.+-+++++..+.+|..+...=.+.+.+.. . .+.......+..++.=++...+..+.
T Consensus 11 pi~lii~lGy~~~r~~~~~~~~~~~ls~lv~~~~lP~LlF~~i~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (311)
T COG0679 11 PIFLIILLGYLLKRFGILDEEAARGLSRLVVYVALPALLFNSIATADLSGL-A-DLGLIVASLVATLLAFFLLALIGRFL 88 (311)
T ss_pred HHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhHHHHHHHHHhCCcchh-h-hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445566666665555666666788999999999988877677776544 1 23333333333334444455555566
Q ss_pred hCCCHHHH--HHHHHHhhhhhhHHHHH
Q 036516 302 FGMSFLKA--SCLALIMCCRGIAEIAV 326 (709)
Q Consensus 302 ~~~~~~~~--~~lg~~m~~kG~~~l~~ 326 (709)
.+.+.++. +..+...+.-|-+.+-+
T Consensus 89 ~~~~~~~~~~~~~~~~~~N~g~lg~pi 115 (311)
T COG0679 89 FKLDKRETVIFALASAFPNIGFLGLPV 115 (311)
T ss_pred hccchhhHHHHHHHHHhcccchhhHHH
Confidence 66666655 44444455555555333
No 147
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=59.92 E-value=29 Score=32.90 Aligned_cols=87 Identities=15% Similarity=0.171 Sum_probs=52.8
Q ss_pred HhHHHHHHHHhcCCCC---ChhhHHHhhhhhhhHhhhhHHHHHHhhhcccccc---ccchh-hHHHHHHHHHHHHHHHHH
Q 036516 222 SILTAFFFGLCLPDGP---PLGTQLVQKLDFFTSGFLLPVFCAISGIRMELYL---INEKS-FIKIEFIILMSYLGKFTG 294 (709)
Q Consensus 222 ~~lGaf~~Gl~ip~~~---~~~~~l~~kl~~~~~~~flPlFF~~~G~~~d~~~---l~~~~-~~~~~~ii~~~~~~K~~~ 294 (709)
..-|+++.|+++.+-. |....+-+....+..++-+-+|...+|++.-... +.... +....+..++.++.-.+.
T Consensus 23 ~~~G~L~vgL~~G~~~~~~p~~~~~p~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v~~~~~~~~ 102 (154)
T TIGR01625 23 NAGGVLFVGLLLGHFGATGPLTWYIPFSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALITVVPTLLV 102 (154)
T ss_pred ccHHHHHHHHHHHhccccCCcceecChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 3457778888777643 3333444455666788888899999999886543 33322 222223333334444556
Q ss_pred HHHhHhhhCCCHHH
Q 036516 295 VMVPSLFFGMSFLK 308 (709)
Q Consensus 295 ~~l~~~~~~~~~~~ 308 (709)
.++..+++|+++..
T Consensus 103 ~~~~~~~~~~~~~~ 116 (154)
T TIGR01625 103 AVALIKLLRINYAL 116 (154)
T ss_pred HHHHHHHhCCCHHH
Confidence 66666788998754
No 148
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=59.58 E-value=1.2e+02 Score=35.30 Aligned_cols=89 Identities=12% Similarity=0.055 Sum_probs=52.7
Q ss_pred hhHhHHHHHHHHhcCCCC---ChhhHHHhhhhhhhHhhhhHHHHHHhhhcccccccc---chhhHHHHHHHHHHHHHHHH
Q 036516 220 QNSILTAFFFGLCLPDGP---PLGTQLVQKLDFFTSGFLLPVFCAISGIRMELYLIN---EKSFIKIEFIILMSYLGKFT 293 (709)
Q Consensus 220 ~~~~lGaf~~Gl~ip~~~---~~~~~l~~kl~~~~~~~flPlFF~~~G~~~d~~~l~---~~~~~~~~~ii~~~~~~K~~ 293 (709)
+....|+++.|+++.+.. |....+-+....+...+.+-+|...+|++.-...+. ...|...+.-+++.+ .-.+
T Consensus 415 lg~~~g~l~~gl~~g~~~~~~~~~~~~p~~a~~~l~~~GL~lFla~vG~~aG~~f~~~l~~~G~~~~~~g~~~~~-~~~~ 493 (562)
T TIGR03802 415 LGTGGGALISGLVFGWLRSKHPTFGNIPSSASWLLKDLGLALFIAVVGLSAGPQAVTAIKEMGLTLFLLGIVVTI-LPLI 493 (562)
T ss_pred ehhhHHHHHHHHHHHHhcccCCcceecCHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHH-HHHH
Confidence 345679999999998642 332234455555567888889999999987654332 223333222222222 2334
Q ss_pred HHHHhH-hhhCCCHHHH
Q 036516 294 GVMVPS-LFFGMSFLKA 309 (709)
Q Consensus 294 ~~~l~~-~~~~~~~~~~ 309 (709)
.+++.+ +.+|+++-..
T Consensus 494 ~~~~~~~~~~~~~~~~~ 510 (562)
T TIGR03802 494 ITMLIGKYVLKYDPALL 510 (562)
T ss_pred HHHHHHHHHhCCCHHHH
Confidence 455555 6788887643
No 149
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=59.16 E-value=2.1e+02 Score=30.90 Aligned_cols=127 Identities=12% Similarity=0.099 Sum_probs=67.7
Q ss_pred cceeccchhhHHHHHHHhhcCCccEEEEEecCCCCCCCcccCCCcceEEEEeeccCcChHHHHHHHHHHhcCCCeEEEEE
Q 036516 507 GILESTDLSIRALNRNVLHKAPCSVGILVHRGQNKSNRPVYTGELLYHIVMLFIGGADDREALAYSRRMAEHPNTSLTVV 586 (709)
Q Consensus 507 g~~~~~~~~~~~~~~~Vl~~apCsVgIlvdrg~~~~~~~~~~~~~~~~V~~~f~Gg~ddreAl~~a~rma~~~~~~ltvl 586 (709)
|.++..-+....+.+.|-+..+-||++ |-... . ..-||.+..|++++++++.+. + +..+
T Consensus 186 GslenR~Rf~~eii~~ir~~~~~~v~v---Ris~~--------d-------~~~~G~~~~e~~~i~~~l~~~-g--vD~i 244 (337)
T PRK13523 186 GSPENRYRFLREIIDAVKEVWDGPLFV---RISAS--------D-------YHPGGLTVQDYVQYAKWMKEQ-G--VDLI 244 (337)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCeEE---Eeccc--------c-------cCCCCCCHHHHHHHHHHHHHc-C--CCEE
Confidence 445555556788888887776667765 21110 0 113688889999999999764 3 3445
Q ss_pred EeeecCCCCCCCCCCCchhHHHHHHHHHhhhcCCCcEEEEEEeecChhhHHHHHHhhhcCCcEEEEecCCCCCc
Q 036516 587 WFITTDQNRPSTEMPDDHELDNQAFDEFKDSMVGNKIIFREEIVKDGIGTTQVIQAFAETFDLFIVGKNHDPCC 660 (709)
Q Consensus 587 ~v~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~v~y~e~~v~~g~~~~~~i~~~~~~~DLiiVG~~~~~~~ 660 (709)
++-......+. .... ...+.++.++++... +..+... -.+.+.++..+.|++ ..+|+|.+||.-=.++
T Consensus 245 ~vs~g~~~~~~-~~~~-~~~~~~~~~~ik~~~-~ipVi~~-G~i~~~~~a~~~l~~--g~~D~V~~gR~~iadP 312 (337)
T PRK13523 245 DVSSGAVVPAR-IDVY-PGYQVPFAEHIREHA-NIATGAV-GLITSGAQAEEILQN--NRADLIFIGRELLRNP 312 (337)
T ss_pred EeCCCCCCCCC-CCCC-ccccHHHHHHHHhhc-CCcEEEe-CCCCCHHHHHHHHHc--CCCChHHhhHHHHhCc
Confidence 54321110000 0100 111334566666532 1133332 223344455555553 3699999999764433
No 150
>COG4827 Predicted transporter [General function prediction only]
Probab=58.66 E-value=1.9e+02 Score=28.56 Aligned_cols=44 Identities=18% Similarity=0.271 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHhhhcChHHHHhh--hhhHHHHHHH-HHHHHHHHH
Q 036516 31 FAEFGMILHAFVLGVQIDLGLVKHI--RKRAVIIGIT-STLLPLVFG 74 (709)
Q Consensus 31 la~iGli~~lF~~Gle~d~~~l~~~--~~~~~~i~~~-~~~ip~~~g 74 (709)
.=..|..+.+|..|+++-+..=..+ .|++..|+-. ++++|++.|
T Consensus 10 ~~~~gIl~~ilIfGlKtGlg~GFag~~~r~a~~Iaa~yg~li~a~~g 56 (239)
T COG4827 10 TYVIGILIGILIFGLKTGLGCGFAGITTREALTIAASYGFLILAFGG 56 (239)
T ss_pred HHHHHHHHHHHHHhhhhccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 3478899999999998887654322 3445555544 555555544
No 151
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=57.86 E-value=1.3e+02 Score=32.02 Aligned_cols=102 Identities=12% Similarity=0.206 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHhhc------ccCCCCchhH-HHHHHHHHHHHHHHHHHhchhHhHHHHHHHHhcCCCCChhhHH
Q 036516 171 YYIIVIFLVRPLTMRIVSKN------SEEESMNQNH-FIITICIVLVTTILGTLVGQNSILTAFFFGLCLPDGPPLGTQL 243 (709)
Q Consensus 171 ~~~~~~~v~r~~~~~i~~~~------~~~~~~~e~~-~~~vl~~~l~~~~~~~~~G~~~~lGaf~~Gl~ip~~~~~~~~l 243 (709)
|..++-.+-+|+++++..+. +..++++... +.+-+....+++.+. =.-.+.+|.+.+|-.+.+.. .-+++
T Consensus 158 YMaLvPiiqPpimklLttkkeR~I~M~~~r~Vsk~eKi~Fpivv~~i~~ll~--P~a~pLig~Lm~GnllrEsG-v~~rl 234 (354)
T TIGR01109 158 YMALVPIIQPPIMKALTSEKERKIRMKQLRTVSKREKILFPIVLLLLVALLI--PKALPLVGMLMFGNLMRESG-VVERL 234 (354)
T ss_pred HHHHHhcccchHHHhhcChHHhccccCCCCCcCccchhHHHHHHHHHHHHHc--cchHHHHHHHHHHHHHHHhc-cHHHH
Confidence 55556666778887764432 1122333332 455555555555442 22368999999999999864 33444
Q ss_pred HhhhhhhhHhhhhHHHHHHhhhccccccccch
Q 036516 244 VQKLDFFTSGFLLPVFCAISGIRMELYLINEK 275 (709)
Q Consensus 244 ~~kl~~~~~~~flPlFF~~~G~~~d~~~l~~~ 275 (709)
.+..+.-..++.--+.-..+|...+-+.+.+.
T Consensus 235 ~~taqn~l~nivTifLGl~vG~~~~A~~fL~~ 266 (354)
T TIGR01109 235 SKTASNELLNIVTILLGLSVGAKMRADKFLTP 266 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccHHhhCCh
Confidence 44444333333332334577777776555433
No 152
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=57.83 E-value=85 Score=29.25 Aligned_cols=40 Identities=8% Similarity=-0.002 Sum_probs=20.0
Q ss_pred hhHHHHH--HhhhccccccccchhhHHHHHHHHHHHHHHHHHH
Q 036516 255 LLPVFCA--ISGIRMELYLINEKSFIKIEFIILMSYLGKFTGV 295 (709)
Q Consensus 255 flPlFF~--~~G~~~d~~~l~~~~~~~~~~ii~~~~~~K~~~~ 295 (709)
-+|+||+ .+|.-..++.+....|. .++.++++.+.=++.+
T Consensus 68 ~m~LfFVPagVGim~~~~ll~~~~~~-Il~~ivvSTllvl~vt 109 (141)
T PRK04125 68 NIGFLFVPSGISVINSLGVMSQYPVQ-IIGVIIVATILLLACT 109 (141)
T ss_pred HHHHHHhhhHhHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 3678885 56665555555554444 3333334433333333
No 153
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=56.31 E-value=49 Score=34.71 Aligned_cols=111 Identities=14% Similarity=0.056 Sum_probs=73.8
Q ss_pred cceEEEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEEEecCCCCC
Q 036516 463 GHVVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGILVHRGQNKS 542 (709)
Q Consensus 463 ~~v~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIlvdrg~~~~ 542 (709)
++..|-.|...+ ..+.+.|++.|++.+...||.-..+.-...+ ...+.....+..+++++||.+=-|++...
T Consensus 16 ~~yaV~Afn~~n--~e~~~avi~aAe~~~~Pvii~~~~~~~~~~~-----~~~~~~~~~~~a~~~~vpv~lHlDH~~~~- 87 (281)
T PRK06806 16 ENYGVGAFSVAN--MEMVMGAIKAAEELNSPIILQIAEVRLNHSP-----LHLIGPLMVAAAKQAKVPVAVHFDHGMTF- 87 (281)
T ss_pred CCceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEcCcchhccCC-----hHHHHHHHHHHHHHCCCCEEEECCCCCCH-
Confidence 456777777777 5889999999999999999998765533222 12467778888999999999988887521
Q ss_pred CCcc-cCCCcceEEEEeeccCcChHHHHHHHHHH---hcCCCeE
Q 036516 543 NRPV-YTGELLYHIVMLFIGGADDREALAYSRRM---AEHPNTS 582 (709)
Q Consensus 543 ~~~~-~~~~~~~~V~~~f~Gg~ddreAl~~a~rm---a~~~~~~ 582 (709)
..+ ..-.......++---..+++|-++.++++ ++..++.
T Consensus 88 -e~i~~Al~~G~tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv~ 130 (281)
T PRK06806 88 -EKIKEALEIGFTSVMFDGSHLPLEENIQKTKEIVELAKQYGAT 130 (281)
T ss_pred -HHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCe
Confidence 000 00001122334444455778888887666 4556655
No 154
>PRK15475 oxaloacetate decarboxylase subunit beta; Provisional
Probab=55.18 E-value=1.5e+02 Score=32.04 Aligned_cols=103 Identities=11% Similarity=0.217 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhc------ccCCCCchhH-HHHHHHHHHHHHHHHHHhchhHhHHHHHHHHhcCCCCChhhH
Q 036516 170 VYYIIVIFLVRPLTMRIVSKN------SEEESMNQNH-FIITICIVLVTTILGTLVGQNSILTAFFFGLCLPDGPPLGTQ 242 (709)
Q Consensus 170 ~~~~~~~~v~r~~~~~i~~~~------~~~~~~~e~~-~~~vl~~~l~~~~~~~~~G~~~~lGaf~~Gl~ip~~~~~~~~ 242 (709)
.|..++-.+-+|+++++..+. ...++++... +.+-+...++++++. =.-.+.+|.|.+|-.+.+.. .-++
T Consensus 228 SYMaLVPiIQPpimklLTTkkER~I~M~~lr~VSk~eKIlFPivv~i~~~ll~--P~a~PLiGmlmfGNllrEsG-Vv~r 304 (433)
T PRK15475 228 SYMALVPLIQPPIMKALTTETERKIRMVQLRTVSKREKILFPVVLLLLVALLL--PDAAPLLGMFCFGNLMRESG-VVER 304 (433)
T ss_pred HHHHHHhcccchHHHhccCHHHhCccCCCCCCCCccchhHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHHHhc-cHHH
Confidence 355666677788888875432 1122333332 455555555555542 22358999999999999864 3344
Q ss_pred HHhhhhhhhHhhhhHHHHHHhhhccccccccch
Q 036516 243 LVQKLDFFTSGFLLPVFCAISGIRMELYLINEK 275 (709)
Q Consensus 243 l~~kl~~~~~~~flPlFF~~~G~~~d~~~l~~~ 275 (709)
+.+..+.-..++.--+.-..+|...+-..+.+.
T Consensus 305 Ls~taqn~L~nivTIfLGl~VGa~~~A~~FL~~ 337 (433)
T PRK15475 305 LSDTVQNGLINIVTIFLGLSVGAKLVADKFLQP 337 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccHHhhCCh
Confidence 444444333333333334677877776555433
No 155
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=53.99 E-value=26 Score=37.39 Aligned_cols=54 Identities=15% Similarity=0.144 Sum_probs=38.1
Q ss_pred hHHHHHHHHHhhhcCCCcEEEEEEee---cChhhHHHHHHhhhc-----CCcEEEEecCCCC
Q 036516 605 ELDNQAFDEFKDSMVGNKIIFREEIV---KDGIGTTQVIQAFAE-----TFDLFIVGKNHDP 658 (709)
Q Consensus 605 ~~d~~~l~~~~~~~~~~~v~y~e~~v---~~g~~~~~~i~~~~~-----~~DLiiVG~~~~~ 658 (709)
....++++..+.+++.-.+.+-...| +...++.++|+...+ +||++|++|+||.
T Consensus 26 Aa~~D~~~~~~~r~~~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs 87 (319)
T PF02601_consen 26 AAIQDFLRTLKRRNPIVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGS 87 (319)
T ss_pred HHHHHHHHHHHHhCCCcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCC
Confidence 44566888888776633455545555 445678888888752 5999999999985
No 156
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=53.79 E-value=92 Score=36.15 Aligned_cols=75 Identities=12% Similarity=0.050 Sum_probs=46.7
Q ss_pred hHhhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHhHh---------hhCCCHHHHHHHHHHhhhhhh
Q 036516 251 TSGFLLPVFCAISGIRMELYLINEKSFIKIEFIILMSYLGKFTGVMVPSL---------FFGMSFLKASCLALIMCCRGI 321 (709)
Q Consensus 251 ~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~---------~~~~~~~~~~~lg~~m~~kG~ 321 (709)
...+++|....-.|+.+|...+... ++.+..+.+++++.-.+.+....+ ..++|+.+++.+|.++++..-
T Consensus 68 f~~~~LPpIlFe~g~~l~~~~f~~n-~~~Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~~~allfGAiiSaTDP 146 (559)
T TIGR00840 68 FFLYLLPPIVLDAGYFMPQRNFFEN-LGSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVDP 146 (559)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCHHHHHHHhHHhcCCch
Confidence 3557888888889999998877654 333333333322222222211111 125699999999999999887
Q ss_pred HHHHH
Q 036516 322 AEIAV 326 (709)
Q Consensus 322 ~~l~~ 326 (709)
+...-
T Consensus 147 VAVla 151 (559)
T TIGR00840 147 VAVLA 151 (559)
T ss_pred HHHHH
Confidence 76553
No 157
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=53.41 E-value=1.7e+02 Score=31.24 Aligned_cols=77 Identities=13% Similarity=0.164 Sum_probs=42.1
Q ss_pred hHHHHHHHHhcCCCCChhhHHHhhhhhhhHhhhhHHHHHHhhhccccccccch--hhHHHHHHHHHHHHHHHHHHHHhHh
Q 036516 223 ILTAFFFGLCLPDGPPLGTQLVQKLDFFTSGFLLPVFCAISGIRMELYLINEK--SFIKIEFIILMSYLGKFTGVMVPSL 300 (709)
Q Consensus 223 ~lGaf~~Gl~ip~~~~~~~~l~~kl~~~~~~~flPlFF~~~G~~~d~~~l~~~--~~~~~~~ii~~~~~~K~~~~~l~~~ 300 (709)
++.+.++|...|.-...+..+. .|.. ..+.+.+.|...|++++.+.+... .|..........++.=.+.++...+
T Consensus 7 l~~ai~la~~~P~~g~~~~~~~--~~~~-~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~~~~ 83 (313)
T PF13593_consen 7 LLLAILLAYLFPAPGAAGGVIK--PEYV-IKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFGLSR 83 (313)
T ss_pred HHHHHHHHHHcCcccccCCccc--hhhh-HHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888887543333221 1222 333466777789999998887654 4554333333333333333444444
Q ss_pred hh
Q 036516 301 FF 302 (709)
Q Consensus 301 ~~ 302 (709)
..
T Consensus 84 l~ 85 (313)
T PF13593_consen 84 LF 85 (313)
T ss_pred Hh
Confidence 33
No 158
>PRK15477 oxaloacetate decarboxylase subunit beta; Provisional
Probab=53.32 E-value=1.7e+02 Score=31.68 Aligned_cols=103 Identities=11% Similarity=0.218 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhc------ccCCCCchhH-HHHHHHHHHHHHHHHHHhchhHhHHHHHHHHhcCCCCChhhH
Q 036516 170 VYYIIVIFLVRPLTMRIVSKN------SEEESMNQNH-FIITICIVLVTTILGTLVGQNSILTAFFFGLCLPDGPPLGTQ 242 (709)
Q Consensus 170 ~~~~~~~~v~r~~~~~i~~~~------~~~~~~~e~~-~~~vl~~~l~~~~~~~~~G~~~~lGaf~~Gl~ip~~~~~~~~ 242 (709)
.|..+.-.+-+|+++++..+. ...++++... +.+-+...++++.+. =.-.+.+|.|.+|-.+.+.. .-++
T Consensus 228 SYMaLVPiIQPpimklLTTkkER~I~M~~lr~VSk~eKIlFPivv~i~~~ll~--P~a~PLiGmlmfGNllrEsG-Vv~r 304 (433)
T PRK15477 228 SYMALVPLIQPPIMKALTTEKERKIRMVQLRTVSKREKILFPVVLLLLVALLL--PDAAPLLGMFCFGNLMRESG-VVER 304 (433)
T ss_pred HHHHHHhcccchHHHhccCHHHhCccCCCCCCCCccchhHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHHHhc-cHHH
Confidence 355566667778888774431 1122333332 455555555555542 22358999999999999864 3344
Q ss_pred HHhhhhhhhHhhhhHHHHHHhhhccccccccch
Q 036516 243 LVQKLDFFTSGFLLPVFCAISGIRMELYLINEK 275 (709)
Q Consensus 243 l~~kl~~~~~~~flPlFF~~~G~~~d~~~l~~~ 275 (709)
+.+..+.-..++.--+.-..+|...+-..+.+.
T Consensus 305 Ls~taqn~L~nivTIfLGl~VGa~~~A~~FL~~ 337 (433)
T PRK15477 305 LSDTVQNGLINIVTIFLGLSVGAKLVADKFLQP 337 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccHHhhCCh
Confidence 444444333333333334677877776555433
No 159
>PRK15476 oxaloacetate decarboxylase subunit beta; Provisional
Probab=53.30 E-value=1.7e+02 Score=31.68 Aligned_cols=103 Identities=11% Similarity=0.218 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhc------ccCCCCchhH-HHHHHHHHHHHHHHHHHhchhHhHHHHHHHHhcCCCCChhhH
Q 036516 170 VYYIIVIFLVRPLTMRIVSKN------SEEESMNQNH-FIITICIVLVTTILGTLVGQNSILTAFFFGLCLPDGPPLGTQ 242 (709)
Q Consensus 170 ~~~~~~~~v~r~~~~~i~~~~------~~~~~~~e~~-~~~vl~~~l~~~~~~~~~G~~~~lGaf~~Gl~ip~~~~~~~~ 242 (709)
.|..+.-.+-+|+++++..+. ...++++... +.+-+...++++.+. =.-.+.+|.|.+|-.+.+.. .-++
T Consensus 228 SYMaLVPiIQPpimklLTTkkER~I~M~~lr~VSk~eKIlFPivv~i~~~ll~--P~a~PLiGmlmfGNllrEsG-Vv~r 304 (433)
T PRK15476 228 SYMALVPLIQPPIMKALTTEKERKIRMVQLRTVSKREKILFPVVLLLLVALLL--PDAAPLLGMFCFGNLMRESG-VVER 304 (433)
T ss_pred HHHHHHhcccchHHHhccCHHHhCccCCCCCCCCccchhHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHHHhc-cHHH
Confidence 355566667778888774431 1122333332 455555555555542 22358999999999999864 3344
Q ss_pred HHhhhhhhhHhhhhHHHHHHhhhccccccccch
Q 036516 243 LVQKLDFFTSGFLLPVFCAISGIRMELYLINEK 275 (709)
Q Consensus 243 l~~kl~~~~~~~flPlFF~~~G~~~d~~~l~~~ 275 (709)
+.+..+.-..++.--+.-..+|...+-..+.+.
T Consensus 305 Ls~taqn~L~nivTIfLGl~VGa~~~A~~FL~~ 337 (433)
T PRK15476 305 LSDTVQNGLINIVTIFLGLSVGAKLVADKFLQP 337 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccHHhhCCh
Confidence 444444333333333334677877776555433
No 160
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=53.03 E-value=1.1e+02 Score=32.08 Aligned_cols=36 Identities=19% Similarity=0.335 Sum_probs=32.9
Q ss_pred eEEEEeeccCcChHHHHHHHHHHhcCCCeEEEEEEeee
Q 036516 553 YHIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFIT 590 (709)
Q Consensus 553 ~~V~~~f~Gg~ddreAl~~a~rma~~~~~~ltvl~v~~ 590 (709)
++|++-+.||+|+--+|.+.+++.++ .++.+++|+.
T Consensus 22 ~~ilVavSGGkDS~~ll~~L~~l~~~--~~~~a~~Vd~ 57 (298)
T COG0037 22 YKILVAVSGGKDSLALLHLLKELGRR--IEVEAVHVDH 57 (298)
T ss_pred CeEEEEeCCChHHHHHHHHHHHhccC--ceEEEEEecC
Confidence 47999999999999999999999988 8999999876
No 161
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=52.39 E-value=69 Score=33.14 Aligned_cols=103 Identities=17% Similarity=0.156 Sum_probs=57.7
Q ss_pred CcChHHHHHHHHHHhc-CCCeEEEEEEeeecCCCCCCCCCCCchhHHHHHHHHHhhhcCCCcEEEEEEeecChhhHHHH-
Q 036516 562 GADDREALAYSRRMAE-HPNTSLTVVWFITTDQNRPSTEMPDDHELDNQAFDEFKDSMVGNKIIFREEIVKDGIGTTQV- 639 (709)
Q Consensus 562 g~ddreAl~~a~rma~-~~~~~ltvl~v~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~v~y~e~~v~~g~~~~~~- 639 (709)
.+.|+-|++.|.|+.+ ..+.++|++.+=++. .++.+.+.-..-. ++.+..+-.-..+.|+..+
T Consensus 36 n~~D~~AvEeAlrLke~~~~~eV~vlt~Gp~~--------------a~~~lr~aLAmGa-Draili~d~~~~~~d~~~ta 100 (260)
T COG2086 36 NPFDLNAVEEALRLKEKGYGGEVTVLTMGPPQ--------------AEEALREALAMGA-DRAILITDRAFAGADPLATA 100 (260)
T ss_pred ChhhHHHHHHHHHhhccCCCceEEEEEecchh--------------hHHHHHHHHhcCC-CeEEEEecccccCccHHHHH
Confidence 7899999999999999 699999999975321 1122333222212 2332222111234444443
Q ss_pred --HHhhh--cCCcEEEEecCCCCC-c----ccccccCcCCCCCccchhhhhh
Q 036516 640 --IQAFA--ETFDLFIVGKNHDPC-C----KATLGLSEWIEYPELGILGDTL 682 (709)
Q Consensus 640 --i~~~~--~~~DLiiVG~~~~~~-~----~~~~gl~~w~e~~eLG~igd~l 682 (709)
|.+.. .++|||+.|+..... + ++++.+..| |-++.+-++-
T Consensus 101 ~~Laa~~~~~~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~---P~~t~v~~i~ 149 (260)
T COG2086 101 KALAAAVKKIGPDLVLTGKQAIDGDTGQVGPLLAELLGW---PQVTYVSKIE 149 (260)
T ss_pred HHHHHHHHhcCCCEEEEecccccCCccchHHHHHHHhCC---ceeeeEEEEE
Confidence 33322 468999999986322 2 334444444 6555554444
No 162
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=50.61 E-value=1.3e+02 Score=27.18 Aligned_cols=87 Identities=9% Similarity=0.094 Sum_probs=50.3
Q ss_pred CCCCceEEEEEeeeccCCCccccccCccccc---cchh-chhHHHHHHHHHHHhcCcceEEEEEEEEccCCChhHHHHHH
Q 036516 411 RNSPIAAFVLQLMELKGSVTAFLKPHHQQTK---SEAA-SSTQLINAFTQFQRCYYGHVVVQHFTTIAPYATMHDDVCTL 486 (709)
Q Consensus 411 ~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~---~~~~-~~~~i~~af~~~~~~~~~~v~v~~~~~vs~~~~~~~dI~~~ 486 (709)
+.-.-.|.-+|++|.++-. +-+..++.--. .-.. ..+...+-+++..+....++-+..-..+ ..+.+++.+.
T Consensus 19 ~gL~r~V~~v~v~e~~d~~-~~l~~gElvlttg~~~~~~~~~~~~~~i~~L~~~~~agL~i~~~~~~---~~iP~~~i~~ 94 (123)
T PF07905_consen 19 NGLDRPVRWVHVMEAPDPS-DWLRGGELVLTTGYALRDDDEEELREFIRELAEKGAAGLGIKTGRYL---DEIPEEIIEL 94 (123)
T ss_pred ccCCCcEEEEEEeecCCHH-HhCCCCeEEEECCcccCCCCHHHHHHHHHHHHHCCCeEEEEeccCcc---ccCCHHHHHH
Confidence 3334578888999988422 22222211000 0011 1123455555555444455665553223 3888999999
Q ss_pred HhhcCccEEEecCCc
Q 036516 487 ALDKRVVIIIVPFHK 501 (709)
Q Consensus 487 A~e~~~dlII~g~h~ 501 (709)
|++++..++.+||+-
T Consensus 95 A~~~~lPli~ip~~~ 109 (123)
T PF07905_consen 95 ADELGLPLIEIPWEV 109 (123)
T ss_pred HHHcCCCEEEeCCCC
Confidence 999999999999843
No 163
>PRK09903 putative transporter YfdV; Provisional
Probab=50.40 E-value=1.9e+02 Score=30.63 Aligned_cols=89 Identities=11% Similarity=0.067 Sum_probs=52.2
Q ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHhhhcChHHHHhhhhhHHHHHHH-HHHHHHHHHHHHHHHHhhhccCCchhhHHHHH
Q 036516 19 LFPMGSRYVLRTFAEFGMILHAFVLGVQIDLGLVKHIRKRAVIIGIT-STLLPLVFGLSSFRIVQRISHLDDETASSIAA 97 (709)
Q Consensus 19 ~fp~~~~~~l~~la~iGli~~lF~~Gle~d~~~l~~~~~~~~~i~~~-~~~ip~~~g~~~~~~l~~~~~~~~~~~~~~l~ 97 (709)
-.|..-.+.++.+++...-+-||..|+.+.....+.. ++.+..... -++.|++. ++...++ +. + ....-
T Consensus 191 ~lP~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~~~~-~~~~~~~~~Kli~~P~i~-~~~~~~~-~l---~----~~~~~ 260 (314)
T PRK09903 191 KIPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFEFS-AEIAYNTFLKLILMPLAL-LLVGMAC-HL---N----SEHLQ 260 (314)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-HHHHHHHHHHHHHHHHHH-HHHHHHc-CC---C----cHHHH
Confidence 3566668899999999999999999999877655443 333333333 33356654 3323222 21 1 12334
Q ss_pred HHHHHhhchHHHHHHHHHHh
Q 036516 98 SVVVNSMTSLVVITGLLKEL 117 (709)
Q Consensus 98 l~~~ls~Ts~~vv~~iL~el 117 (709)
....++.+..++.+.++.+.
T Consensus 261 v~vl~aa~P~a~~~~i~A~~ 280 (314)
T PRK09903 261 MMVLAGALPPAFSGIIIASR 280 (314)
T ss_pred HHHHHHcccHHHHHHHHHHH
Confidence 45555656666666666543
No 164
>PRK04972 putative transporter; Provisional
Probab=50.10 E-value=1.2e+02 Score=35.17 Aligned_cols=102 Identities=17% Similarity=0.088 Sum_probs=57.2
Q ss_pred hchhHhHHHHHHHHhcCC---CCChhhHHHhhhhhhhHhhhhHHHHHHhhhcccccc---ccchhhHHHHHHHHHHHHHH
Q 036516 218 VGQNSILTAFFFGLCLPD---GPPLGTQLVQKLDFFTSGFLLPVFCAISGIRMELYL---INEKSFIKIEFIILMSYLGK 291 (709)
Q Consensus 218 ~G~~~~lGaf~~Gl~ip~---~~~~~~~l~~kl~~~~~~~flPlFF~~~G~~~d~~~---l~~~~~~~~~~ii~~~~~~K 291 (709)
+++...-|+.+.|+++.+ ..|....+-+.-..+.+.+=+-+|.+.+|++--... +....|...+.-+++.++.-
T Consensus 408 ~~LG~agG~L~~gl~~g~~~~~~~~~~~~p~~a~~~l~~~GL~lFla~vGl~aG~~f~~~~~~~g~~~~~~g~~~t~~~~ 487 (558)
T PRK04972 408 FGIGNAAGLLFAGIMLGFLRANHPTFGYIPQGALNMVKEFGLMVFMAGVGLSAGSGINNGLGAVGGQMLIAGLIVSLVPV 487 (558)
T ss_pred eeccccHHHHHHHHHHHhccccCCCceeeCHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 334456789999999987 334444444444445566667788888888765433 32223433333233333333
Q ss_pred HHHHHHhHhhhCCCHHHHHHHHHHhhhhhh
Q 036516 292 FTGVMVPSLFFGMSFLKASCLALIMCCRGI 321 (709)
Q Consensus 292 ~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~ 321 (709)
+++.++.-+.+|+++.. .+|.+-..+..
T Consensus 488 ~~~~~~~~~~~k~~~~~--~~G~~aG~~t~ 515 (558)
T PRK04972 488 VICFLFGAYVLRMNRAL--LFGAIMGARTC 515 (558)
T ss_pred HHHHHHHHHHHcCCHHH--HHHHHhCCCCC
Confidence 34444444778998874 44444444433
No 165
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=47.79 E-value=1.3e+02 Score=33.86 Aligned_cols=58 Identities=16% Similarity=0.189 Sum_probs=42.3
Q ss_pred eEEEEeeccCcChHHHHHHHHHHh-cCCCeEEEEEEeeecCCCCCCCCCCCchhHHHHHHHHHhhhc
Q 036516 553 YHIVMLFIGGADDREALAYSRRMA-EHPNTSLTVVWFITTDQNRPSTEMPDDHELDNQAFDEFKDSM 618 (709)
Q Consensus 553 ~~V~~~f~Gg~ddreAl~~a~rma-~~~~~~ltvl~v~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 618 (709)
.+|++-+.||+|+--.|.+..++. ..++.+++++|++..-. .+.+.+.++.+++..++
T Consensus 16 ~~ilvavSGG~DS~~Ll~~l~~~~~~~~~~~l~a~hvnhglr--------~~s~~~~~~~~~~~~~l 74 (436)
T PRK10660 16 RQILVAFSGGLDSTVLLHLLVQWRTENPGVTLRAIHVHHGLS--------PNADSWVKHCEQVCQQW 74 (436)
T ss_pred CeEEEEecCCHHHHHHHHHHHHHHHhcCCCeEEEEEEeCCCC--------cchHHHHHHHHHHHHHc
Confidence 469999999999988888888776 45678999999975211 12334557777777654
No 166
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=47.26 E-value=47 Score=30.81 Aligned_cols=58 Identities=14% Similarity=0.067 Sum_probs=43.5
Q ss_pred hhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEEEecCC
Q 036516 479 MHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGILVHRGQ 539 (709)
Q Consensus 479 ~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIlvdrg~ 539 (709)
..+.+.+++++++++.||+|...+. +|.........+.+.+++-++.++|| +++|...
T Consensus 42 ~~~~l~~~i~~~~i~~iVvGlP~~~--~G~~~~~~~~v~~f~~~L~~~~~~~v-~~~DEr~ 99 (138)
T PRK00109 42 DWDRLEKLIKEWQPDGLVVGLPLNM--DGTEGPRTERARKFANRLEGRFGLPV-VLVDERL 99 (138)
T ss_pred HHHHHHHHHHHhCCCEEEEeccCCC--CCCcCHHHHHHHHHHHHHHHHhCCCE-EEEcCCc
Confidence 4788999999999999999987653 45443334467888888877778998 5566643
No 167
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=47.03 E-value=1.9e+02 Score=29.05 Aligned_cols=104 Identities=13% Similarity=0.110 Sum_probs=53.7
Q ss_pred chhHHHHHHHHHHHhcCcceEEEEEEEEccCCCh--hHHHHHHHhhcCccEEEec-CCccccCCcceeccchhhHHHHHH
Q 036516 446 SSTQLINAFTQFQRCYYGHVVVQHFTTIAPYATM--HDDVCTLALDKRVVIIIVP-FHKQWGVGGILESTDLSIRALNRN 522 (709)
Q Consensus 446 ~~~~i~~af~~~~~~~~~~v~v~~~~~vs~~~~~--~~dI~~~A~e~~~dlII~g-~h~~~~~~g~~~~~~~~~~~~~~~ 522 (709)
...++.+.+++..++. +..+.. . .+..+. ..+..+....+++|-||+. .+.. + ...++
T Consensus 13 ~~~~~~~gi~~~~~~~--~~~~~~--~-~~~~~~~~~~~~i~~l~~~~~dgiii~~~~~~----------~----~~~~~ 73 (265)
T cd06285 13 VMATMYEGIEEAAAER--GYSTFV--A-NTGDNPDAQRRAIEMLLDRRVDGLILGDARSD----------D----HFLDE 73 (265)
T ss_pred cHHHHHHHHHHHHHHC--CCEEEE--E-eCCCCHHHHHHHHHHHHHcCCCEEEEecCCCC----------h----HHHHH
Confidence 4456666666655432 233321 1 222232 2366777888999966654 2110 0 11223
Q ss_pred HhhcCCccEEEEEecCCCCCCCcccCCCcceEEEEeeccCcChHHHHH-HHHHHhcCCCeEEEEE
Q 036516 523 VLHKAPCSVGILVHRGQNKSNRPVYTGELLYHIVMLFIGGADDREALA-YSRRMAEHPNTSLTVV 586 (709)
Q Consensus 523 Vl~~apCsVgIlvdrg~~~~~~~~~~~~~~~~V~~~f~Gg~ddreAl~-~a~rma~~~~~~ltvl 586 (709)
+++++.|| |++||.... ..++ +.|+.++-. .++.|.++..-++-++
T Consensus 74 -~~~~~iPv-v~~~~~~~~---------------~~~V-~~d~~~ag~~a~~~L~~~g~~~i~~i 120 (265)
T cd06285 74 -LTRRGVPF-VLVLRHAGT---------------SPAV-TGDDVLGGRLATRHLLDLGHRRIAVL 120 (265)
T ss_pred -HHHcCCCE-EEEccCCCC---------------CCEE-EeCcHHHHHHHHHHHHHCCCccEEEE
Confidence 46678898 777875321 1233 445555544 5566666655555444
No 168
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]
Probab=46.23 E-value=1.2e+02 Score=33.76 Aligned_cols=75 Identities=12% Similarity=0.213 Sum_probs=51.7
Q ss_pred EEEEeeccCcChHHHHHHHHHHhcCCCeEEEEEEeee--cCCCCCCCCCCCchhHHHHHHHHHhhhcCCCcEEEEEEeec
Q 036516 554 HIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFIT--TDQNRPSTEMPDDHELDNQAFDEFKDSMVGNKIIFREEIVK 631 (709)
Q Consensus 554 ~V~~~f~Gg~ddreAl~~a~rma~~~~~~ltvl~v~~--~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~v~y~e~~v~ 631 (709)
+||++|.||-|.--...++-+.+-.. -.+-++.+-- ++...+ .+.++++....-++|++..++.....+.|..|.
T Consensus 252 ~VcVlfSGGvDs~vvA~l~h~~vp~n-e~IdLINVaF~n~e~~~~--~~~PDRktgr~g~~eL~s~~P~R~~nlV~vnV~ 328 (520)
T KOG0573|consen 252 NVCVLFSGGVDSTVVAVLAHYVVPEN-EPIDLINVAFGNPEGSKE--QNVPDRKTGRRGLEELQSLYPKRSWNLVEVNVT 328 (520)
T ss_pred cEEEEecCCchHHHHHHHHHhhcCCC-CceeEEEeeccCCCcccc--cCCccHHHHHHHHHHHHHhCCcceEEEEeccCC
Confidence 69999999999999888888887433 2445555432 211111 234678888889999998877436677787773
No 169
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=45.57 E-value=4.2e+02 Score=28.49 Aligned_cols=102 Identities=13% Similarity=0.210 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHhhc------ccCCCCchhH-HHHHHHHHHHHHHHHHHhchhHhHHHHHHHHhcCCCCChhhHH
Q 036516 171 YYIIVIFLVRPLTMRIVSKN------SEEESMNQNH-FIITICIVLVTTILGTLVGQNSILTAFFFGLCLPDGPPLGTQL 243 (709)
Q Consensus 171 ~~~~~~~v~r~~~~~i~~~~------~~~~~~~e~~-~~~vl~~~l~~~~~~~~~G~~~~lGaf~~Gl~ip~~~~~~~~l 243 (709)
|..++-.+-+|+++-+..+. ++.+++++.. +.+-++...+++.+. =.-.+.+|.+.+|-.+.+.. ..+++
T Consensus 158 YMaLvPiiqPpimklLttkkeR~I~M~~~r~Vsk~ekiiFpivv~~~~~ll~--P~a~pLig~Lm~Gnl~rEsg-v~~rL 234 (360)
T PF03977_consen 158 YMALVPIIQPPIMKLLTTKKERKIRMKQLRPVSKTEKIIFPIVVTILVGLLL--PSAAPLIGMLMFGNLLRESG-VVERL 234 (360)
T ss_pred HHHHHhhhhhHHHHHhcCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHc--cchHHHHHHHHHHHHHHHhc-cHHHH
Confidence 33444555566666553321 2223444433 555555555555542 23358999999999999864 34444
Q ss_pred HhhhhhhhHhhhhHHHHHHhhhccccccccch
Q 036516 244 VQKLDFFTSGFLLPVFCAISGIRMELYLINEK 275 (709)
Q Consensus 244 ~~kl~~~~~~~flPlFF~~~G~~~d~~~l~~~ 275 (709)
.+..+.-..++.--+.-..+|...+-+.+.+.
T Consensus 235 s~taqn~l~nivTi~LGl~vGat~~a~~fL~~ 266 (360)
T PF03977_consen 235 SKTAQNELMNIVTIFLGLTVGATMTAETFLNP 266 (360)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHhcCH
Confidence 44444433333333334577877776555433
No 170
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=45.32 E-value=2.3e+02 Score=31.08 Aligned_cols=98 Identities=16% Similarity=0.182 Sum_probs=56.4
Q ss_pred hhhhhHhhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHhHhhhCCC-HHHHHHHHHHh---hhhhhH
Q 036516 247 LDFFTSGFLLPVFCAISGIRMELYLINEKSFIKIEFIILMSYLGKFTGVMVPSLFFGMS-FLKASCLALIM---CCRGIA 322 (709)
Q Consensus 247 l~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~-~~~~~~lg~~m---~~kG~~ 322 (709)
+.+.++..++|+-....=++.|++.+...... .+...+++.++-.+|+.+....++.. -.|...++-.+ -.-|.+
T Consensus 52 ~y~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~-~l~~F~~~~~g~viG~~va~~l~~~~l~~~~wk~ag~l~gsyiGGs~ 130 (378)
T PF05684_consen 52 VYDFVWTYLVPLAIPLLLLSADLRRILRLGGR-LLLAFLIGAVGTVIGAVVAFLLFGGFLGPEGWKIAGMLAGSYIGGSV 130 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHccHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhcccCchh
Confidence 34555777788777777778999887654332 34444555666667777666666543 23333222222 234777
Q ss_pred HHHHHHhhhccCccchhHHHHHHHHH
Q 036516 323 EIAVYCMWKDRKIITNQIFAIMITNM 348 (709)
Q Consensus 323 ~l~~~~~~~~~~~i~~~~~~~lv~~~ 348 (709)
.++....+++ .+++.|+..+.+=
T Consensus 131 N~~Av~~al~---~~~~~~~a~~aaD 153 (378)
T PF05684_consen 131 NFVAVAEALG---VSDSLFAAALAAD 153 (378)
T ss_pred HHHHHHHHHC---CCHHHHHHHHHHH
Confidence 7766665554 3466666654443
No 171
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=45.03 E-value=3e+02 Score=32.49 Aligned_cols=99 Identities=11% Similarity=0.103 Sum_probs=60.0
Q ss_pred cceeEEEeccCCChHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCccccccCccccccchhchhHHHHHHHHHHHhcCc
Q 036516 384 SLRILVCIHKEQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLKPHHQQTKSEAASSTQLINAFTQFQRCYYG 463 (709)
Q Consensus 384 e~riLv~v~~~~~~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~ 463 (709)
+-+||.-++||+..-+++++...+. + ..+|.+--|.+.+..... . . +..+..+.=-.|..+
T Consensus 560 RPQILLlV~nPrss~~Lirf~N~LK---K--ggLYilGHV~~gd~~~~~-~-d------~l~~q~~~W~s~vd~------ 620 (945)
T KOG1288|consen 560 RPQILLLVSNPRSSCNLIRFCNDLK---K--GGLYILGHVIVGDDFSAS-M-D------ELQQQQRAWLSFVDD------ 620 (945)
T ss_pred cceEEEEecCCcccchHHHHHHhhc---c--cceEEEEEEEeccccccc-c-c------hhhHHHHHHHHHHHH------
Confidence 5689999999999999999988875 3 367777666666443211 0 0 000011111122222
Q ss_pred ceEEEEEEEEccCCChhHHHHHHHhhc-----CccEEEecCCcc
Q 036516 464 HVVVQHFTTIAPYATMHDDVCTLALDK-----RVVIIIVPFHKQ 502 (709)
Q Consensus 464 ~v~v~~~~~vs~~~~~~~dI~~~A~e~-----~~dlII~g~h~~ 502 (709)
..++.|+.+.-..++-++|-++-+-- +.+.+|+|||..
T Consensus 621 -~~iKAFvelt~spsir~Giq~Lir~SGLGgMKPNt~VlgF~d~ 663 (945)
T KOG1288|consen 621 -AGIKAFVELTISPSIRWGIQHLIRLSGLGGMKPNTAVLGFYDL 663 (945)
T ss_pred -hhhhhheeeccChhHHHHHHHHhhhcccCCcCCceEEEEeecC
Confidence 23444444444457888887776543 679999999764
No 172
>TIGR00434 cysH phosophoadenylyl-sulfate reductase (thioredoxin). This enzyme, involved in the assimilation of inorganic sulfate, is designated cysH in Bacteria and MET16 in Saccharomyces cerevisiae. Synonyms include phosphoadenosine phosphosulfate reductase, PAPS reductase, and PAPS reductase, thioredoxin-dependent. In a reaction requiring reduced thioredoxin and NADPH, it converts 3(prime)-phosphoadenylylsulfate (PAPS) to sulfite and adenosine 3(prime),5(prime) diphosphate (PAP). A related family of plant enzymes, scoring below the trusted cutoff, differs in having a thioredoxin-like C-terminal domain, not requiring thioredoxin, and in having a preference for 5(prime)-adenylylsulfate (APS) over PAPS.
Probab=44.00 E-value=69 Score=31.83 Aligned_cols=36 Identities=17% Similarity=0.220 Sum_probs=27.3
Q ss_pred EEEEeeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCC
Q 036516 554 HIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFITTDQ 593 (709)
Q Consensus 554 ~V~~~f~Gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~ 593 (709)
++++.|.||+|+--.|.++.+... .+.|+.+.+..+
T Consensus 15 ~~~~s~SgGKDS~Vll~L~~~~~~----~~~v~f~DTg~e 50 (212)
T TIGR00434 15 HLVYSTSFGIQGAVLLDLVSKISP----DIPVIFLDTGYH 50 (212)
T ss_pred CEEEEecCCHHHHHHHHHHHhcCC----CCcEEEecCCCC
Confidence 589999999999999999988643 256776655433
No 173
>PRK01821 hypothetical protein; Provisional
Probab=41.57 E-value=2.7e+02 Score=25.72 Aligned_cols=39 Identities=15% Similarity=0.037 Sum_probs=19.0
Q ss_pred hHHHHH--HhhhccccccccchhhHHHHHHHHHHHHHHHHHH
Q 036516 256 LPVFCA--ISGIRMELYLINEKSFIKIEFIILMSYLGKFTGV 295 (709)
Q Consensus 256 lPlFF~--~~G~~~d~~~l~~~~~~~~~~ii~~~~~~K~~~~ 295 (709)
+|+||+ .+|.-...+.+.++.+. .++.++++.+.=++.+
T Consensus 71 m~LfFVPa~VGim~~~~ll~~~~~~-il~~ivvST~lvl~vt 111 (133)
T PRK01821 71 MALLFVPIGVGVMQYYDLLRAQFGP-IVVSCIVSTLVVLLVV 111 (133)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 677885 55554445555444343 3334444444333333
No 174
>PRK08185 hypothetical protein; Provisional
Probab=41.35 E-value=1.2e+02 Score=31.83 Aligned_cols=111 Identities=14% Similarity=0.093 Sum_probs=73.1
Q ss_pred cceEEEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEEEecCCCCC
Q 036516 463 GHVVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGILVHRGQNKS 542 (709)
Q Consensus 463 ~~v~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIlvdrg~~~~ 542 (709)
++..|-.|...+ ..+.+.|++.|+|.+...|+.-..+.....| ..+....+...++++.||++=-|.+...
T Consensus 11 ~~yaV~AfN~~n--~e~~~avi~AAee~~sPvIl~~~~~~~~~~~------~~~~~~~~~~a~~~~vPV~lHLDHg~~~- 81 (283)
T PRK08185 11 HQFAVGAFNVAD--SCFLRAVVEEAEANNAPAIIAIHPNELDFLG------DNFFAYVRERAKRSPVPFVIHLDHGATI- 81 (283)
T ss_pred cCceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEeCcchhhhcc------HHHHHHHHHHHHHCCCCEEEECCCCCCH-
Confidence 456677777777 5889999999999999999998876543222 1277888889999999999888887521
Q ss_pred CCcc-cCCCcceEEEEeeccCcChHHHHHHHHHHh---cCCCeEE
Q 036516 543 NRPV-YTGELLYHIVMLFIGGADDREALAYSRRMA---EHPNTSL 583 (709)
Q Consensus 543 ~~~~-~~~~~~~~V~~~f~Gg~ddreAl~~a~rma---~~~~~~l 583 (709)
.... ........| ++.---.+..|=++.++++. ...++.+
T Consensus 82 e~i~~ai~~Gf~SV-M~D~S~l~~eeNi~~t~~vv~~a~~~gv~v 125 (283)
T PRK08185 82 EDVMRAIRCGFTSV-MIDGSLLPYEENVALTKEVVELAHKVGVSV 125 (283)
T ss_pred HHHHHHHHcCCCEE-EEeCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 0000 000011123 44433446677777777765 6666655
No 175
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=40.78 E-value=93 Score=32.70 Aligned_cols=70 Identities=14% Similarity=0.107 Sum_probs=54.4
Q ss_pred cceEEEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEEEecCC
Q 036516 463 GHVVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGILVHRGQ 539 (709)
Q Consensus 463 ~~v~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIlvdrg~ 539 (709)
++..|-.|...+ -.+.+.|++.|++.++..||.-+.+....-| ...+....+...+++++||++=-|.+.
T Consensus 16 ~~yaV~AfN~~n--~e~~~avi~AAee~~sPvIiq~~~~~~~~~g-----~~~~~~~~~~~a~~~~VPValHLDH~~ 85 (284)
T PRK12737 16 EGYAVPAFNIHN--LETLQVVVETAAELRSPVILAGTPGTFSYAG-----TDYIVAIAEVAARKYNIPLALHLDHHE 85 (284)
T ss_pred cCceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEcCccHHhhCC-----HHHHHHHHHHHHHHCCCCEEEECCCCC
Confidence 456677777777 4889999999999999999987765432222 124778888999999999999888875
No 176
>COG0175 CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=40.47 E-value=1.3e+02 Score=31.16 Aligned_cols=32 Identities=25% Similarity=0.440 Sum_probs=20.2
Q ss_pred EEEeeccCcChHHHHHHHHHHhcCCCeEEEEEEeee
Q 036516 555 IVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFIT 590 (709)
Q Consensus 555 V~~~f~Gg~ddreAl~~a~rma~~~~~~ltvl~v~~ 590 (709)
+++.|.||+|+-..|.++.+.... +.|+++.+
T Consensus 42 ~~~~~S~Gkds~V~l~L~~k~~~~----~~vif~DT 73 (261)
T COG0175 42 VVVSFSGGKDSTVLLHLAAKAFPD----FPVIFLDT 73 (261)
T ss_pred eEEEecCchhHHHHHHHHHHhcCC----CcEEEEeC
Confidence 566667777776666666666555 55666554
No 177
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=40.44 E-value=91 Score=32.77 Aligned_cols=110 Identities=17% Similarity=0.169 Sum_probs=69.7
Q ss_pred cceEEEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEEEecCCCC-
Q 036516 463 GHVVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGILVHRGQNK- 541 (709)
Q Consensus 463 ~~v~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIlvdrg~~~- 541 (709)
++..|-.+...+ ..+.+.+++.|++.+...||.-..+.-...| -..+........+++++||++=-|.+..-
T Consensus 16 ~~yaV~AfNv~n--~e~~~avi~AAee~~sPvIlq~~~~~~~~~g-----~~~~~~~~~~~A~~~~VPValHLDH~~~~e 88 (284)
T PRK12857 16 GGYAVGAFNCNN--MEIVQAIVAAAEAEKSPVIIQASQGAIKYAG-----IEYISAMVRTAAEKASVPVALHLDHGTDFE 88 (284)
T ss_pred cCCeEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEechhHhhhCC-----HHHHHHHHHHHHHHCCCCEEEECCCCCCHH
Confidence 445566776777 4889999999999999999988765533222 12477778889999999999988887521
Q ss_pred -CCCcccCCCcceEEEEeeccCcChHHHHHHHHHH---hcCCCeE
Q 036516 542 -SNRPVYTGELLYHIVMLFIGGADDREALAYSRRM---AEHPNTS 582 (709)
Q Consensus 542 -~~~~~~~~~~~~~V~~~f~Gg~ddreAl~~a~rm---a~~~~~~ 582 (709)
..+-+ .....+| |...-.-+.+|=++..+++ |...++.
T Consensus 89 ~i~~ai--~~GftSV-M~DgS~lp~eeNi~~T~~vv~~Ah~~gvs 130 (284)
T PRK12857 89 QVMKCI--RNGFTSV-MIDGSKLPLEENIALTKKVVEIAHAVGVS 130 (284)
T ss_pred HHHHHH--HcCCCeE-EEeCCCCCHHHHHHHHHHHHHHHHHcCCE
Confidence 00000 0111234 4443344566666665554 4445543
No 178
>PRK01658 holin-like protein; Validated
Probab=40.40 E-value=2.4e+02 Score=25.59 Aligned_cols=41 Identities=15% Similarity=0.178 Sum_probs=19.6
Q ss_pred hhHHHHH--HhhhccccccccchhhHHHHHHHHHHHHHHHHHHH
Q 036516 255 LLPVFCA--ISGIRMELYLINEKSFIKIEFIILMSYLGKFTGVM 296 (709)
Q Consensus 255 flPlFF~--~~G~~~d~~~l~~~~~~~~~~ii~~~~~~K~~~~~ 296 (709)
-+|+||+ .+|.--..+.+..+.+. .++.++++.+.=++.+.
T Consensus 65 ~m~llFVPa~VGi~~~~~ll~~~~~~-il~~ivvsT~l~l~vtg 107 (122)
T PRK01658 65 ELPLFFIPSAVGVMNYGDFLSSKGIS-LFLVVVISTFVVMIVTG 107 (122)
T ss_pred HHHHHHHHhhhHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 3677885 55554444445444343 33444444444444333
No 179
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=39.31 E-value=32 Score=28.49 Aligned_cols=33 Identities=18% Similarity=0.350 Sum_probs=26.6
Q ss_pred EEEeeccCcChHHHHHHHHHHhcCCCeEEEEEEe
Q 036516 555 IVMLFIGGADDREALAYSRRMAEHPNTSLTVVWF 588 (709)
Q Consensus 555 V~~~f~Gg~ddreAl~~a~rma~~~~~~ltvl~v 588 (709)
|++++-||+|+..++.++.+.+ ..+.+++.+++
T Consensus 1 ilv~~sgg~dS~~~l~~~~~~~-~~~~~~~~~~~ 33 (86)
T cd01984 1 ILVALSGGLDSSVLLHLAKRLK-SGGPEVVALVV 33 (86)
T ss_pred CEEEeeCCHHHHHHHHHHHHHH-hcCCCEEEEEe
Confidence 3577889999999999999987 44557777774
No 180
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=38.84 E-value=5.9e+02 Score=28.30 Aligned_cols=104 Identities=17% Similarity=0.172 Sum_probs=54.4
Q ss_pred hccccccccchhhHHHHHHHHHHHHHHHHHHHHhHhhhCCCHHHHHHH-HHHhhh----hhhHHHHHHHhhhc--cCccc
Q 036516 265 IRMELYLINEKSFIKIEFIILMSYLGKFTGVMVPSLFFGMSFLKASCL-ALIMCC----RGIAEIAVYCMWKD--RKIIT 337 (709)
Q Consensus 265 ~~~d~~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~l-g~~m~~----kG~~~l~~~~~~~~--~~~i~ 337 (709)
+.+|-..+.+. ....+..++.+.++-++.+.+.+.++|.+++|+++. .+=... -|.+.+- ..++ .|.-.
T Consensus 109 Lgm~RklLika-~~r~~p~il~g~~~a~~~g~lvG~l~G~~~~~~i~~i~lPIMgGG~GaGavPLS---~~Ya~~~g~~~ 184 (414)
T PF03390_consen 109 LGMNRKLLIKA-FARFIPPILGGVIGAFLLGGLVGMLFGYSFKDAIFYIVLPIMGGGMGAGAVPLS---QIYAEALGQDA 184 (414)
T ss_pred hhcCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhhhcCCCccccHhHHH---HHHHHHhCCCH
Confidence 33443333333 333445556666777788888889999999998643 221111 1222222 2222 23333
Q ss_pred hhHHHHHHHHHHHH---HHHHHHHHHhhcCccccccch
Q 036516 338 NQIFAIMITNMVII---TGISTTIVGYLYDPSRRYKLD 372 (709)
Q Consensus 338 ~~~~~~lv~~~ll~---t~i~~plv~~ly~p~~~~~~~ 372 (709)
++.++.++-++++- .++..-+++++-+..+++.++
T Consensus 185 ~~~~s~~ipa~~lgNi~AIi~aglL~~lg~~~P~ltGn 222 (414)
T PF03390_consen 185 EEYFSQLIPALTLGNIFAIIFAGLLNKLGKKKPKLTGN 222 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCC
Confidence 45555554444442 344555666666666565543
No 181
>PRK12911 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=38.13 E-value=7.2e+02 Score=31.90 Aligned_cols=16 Identities=19% Similarity=0.347 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHhh
Q 036516 174 IVIFLVRPLTMRIVSK 189 (709)
Q Consensus 174 ~~~~v~r~~~~~i~~~ 189 (709)
..+++.|+++.++.++
T Consensus 1049 tALfVtP~Ll~l~l~~ 1064 (1403)
T PRK12911 1049 TALFMTKFFFMIWMNK 1064 (1403)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 4456667776666554
No 182
>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases []. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) [, ]. It is also found in NodP nodulation protein P from Rhizobium meliloti (Sinorhizobium meliloti) which has ATP sulphurylase activity (sulphate adenylate transferase) [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GOY_C 3G5A_C 3G6K_D 3G59_A 3FWK_A 2WSI_A 2OQ2_B 1SUR_A 2O8V_A 1ZUN_A.
Probab=37.93 E-value=65 Score=30.42 Aligned_cols=51 Identities=25% Similarity=0.326 Sum_probs=33.6
Q ss_pred EEEEeeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCCCCCCCCchhHHHHHHHHHhhhc
Q 036516 554 HIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFITTDQNRPSTEMPDDHELDNQAFDEFKDSM 618 (709)
Q Consensus 554 ~V~~~f~Gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 618 (709)
++++.|.||+|+.-.|.++.+...+. .++++.+..+ -....++++++..+.
T Consensus 1 ~i~vs~SGGKDS~v~l~l~~~~~~~~----~vv~~dtg~e----------~p~t~~~~~~~~~~~ 51 (174)
T PF01507_consen 1 NIVVSFSGGKDSTVMLHLAREAGRKV----PVVFIDTGYE----------FPETYEFVDELAKRY 51 (174)
T ss_dssp SEEEE--SSHHHHHHHHHHHHHHTTC----EEEEEE-STB-----------HHHHHHHHHHHHHT
T ss_pred CeEEEecCCHHHHHHHHHHHHhcCCC----cEEEEecCcc----------CHHHHHHHHHHHhhh
Confidence 37899999999999999999998874 5676654322 223345666666654
No 183
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=37.72 E-value=2.9e+02 Score=29.93 Aligned_cols=86 Identities=15% Similarity=0.152 Sum_probs=46.9
Q ss_pred hHhHHHHHHHHhcCCCCChh-----hHHHhhhhhhhHhhhhHHHHHHhhhccccccccch-hhHHHHHHHHHHHHHHHHH
Q 036516 221 NSILTAFFFGLCLPDGPPLG-----TQLVQKLDFFTSGFLLPVFCAISGIRMELYLINEK-SFIKIEFIILMSYLGKFTG 294 (709)
Q Consensus 221 ~~~lGaf~~Gl~ip~~~~~~-----~~l~~kl~~~~~~~flPlFF~~~G~~~d~~~l~~~-~~~~~~~ii~~~~~~K~~~ 294 (709)
++.+=+.++|+++.-.++.. +.+.+-++.+ .....|+-.+..|..+........ .+......+++-++.-.+.
T Consensus 244 nP~~~a~~lgli~~~~~~~~~~~~~~~i~~~~~~l-g~~~~pl~l~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i 322 (385)
T PF03547_consen 244 NPPLIAIILGLIIGLIPPLRPLFFPSFITDSLSYL-GAAAVPLALFVLGASLARGPRKSALGWKPSIIAVLVRLIILPLI 322 (385)
T ss_pred CcHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHH-HhhhHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHH
Confidence 34444445555554332222 4555555555 677899999999988875433322 2322223344444444555
Q ss_pred HHHhHhhhCCCHH
Q 036516 295 VMVPSLFFGMSFL 307 (709)
Q Consensus 295 ~~l~~~~~~~~~~ 307 (709)
++...+.++++..
T Consensus 323 ~~~~~~~~~l~~~ 335 (385)
T PF03547_consen 323 GIGIVFLLGLDGD 335 (385)
T ss_pred HHHHHHHHCCCHH
Confidence 5666666665543
No 184
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=37.11 E-value=3.1e+02 Score=27.67 Aligned_cols=108 Identities=11% Similarity=0.014 Sum_probs=55.2
Q ss_pred hchhHHHHHHHHHHHhcCcceEEEEEEEEccCCCh--hHHHHHHHhhcCccEEEe-cCCccccCCcceeccchhhHHHHH
Q 036516 445 ASSTQLINAFTQFQRCYYGHVVVQHFTTIAPYATM--HDDVCTLALDKRVVIIIV-PFHKQWGVGGILESTDLSIRALNR 521 (709)
Q Consensus 445 ~~~~~i~~af~~~~~~~~~~v~v~~~~~vs~~~~~--~~dI~~~A~e~~~dlII~-g~h~~~~~~g~~~~~~~~~~~~~~ 521 (709)
....++.+.+++..++. +..+... .+ ..+. .....+...++++|=||+ |... + ... ..
T Consensus 12 ~~~~~~~~~i~~~a~~~--g~~~~~~--~~-~~~~~~~~~~i~~l~~~~vdgii~~~~~~----~---------~~~-~~ 72 (269)
T cd06281 12 PLLAQLFSGAEDRLRAA--GYSLLIA--NS-LNDPERELEILRSFEQRRMDGIIIAPGDE----R---------DPE-LV 72 (269)
T ss_pred ccHHHHHHHHHHHHHHc--CCEEEEE--eC-CCChHHHHHHHHHHHHcCCCEEEEecCCC----C---------cHH-HH
Confidence 34566777777766542 3333221 12 2233 345666677788887765 4210 1 011 22
Q ss_pred HHhhcCCccEEEEEecCCCCCCCcccCCCcceEEEEeeccCcChHHHHH-HHHHHhcCCCeEEEEEE
Q 036516 522 NVLHKAPCSVGILVHRGQNKSNRPVYTGELLYHIVMLFIGGADDREALA-YSRRMAEHPNTSLTVVW 587 (709)
Q Consensus 522 ~Vl~~apCsVgIlvdrg~~~~~~~~~~~~~~~~V~~~f~Gg~ddreAl~-~a~rma~~~~~~ltvl~ 587 (709)
+-+++++.|| |++|+.... . +.++ +.|++++.+ .+..|.++..-++.++.
T Consensus 73 ~~~~~~~ipv-V~i~~~~~~--~------------~~~V-~~d~~~~g~~a~~~l~~~G~~~i~~l~ 123 (269)
T cd06281 73 DALASLDLPI-VLLDRDMGG--G------------ADAV-LFDHAAGMRQAVEYLISLGHRRIALVG 123 (269)
T ss_pred HHHHhCCCCE-EEEecccCC--C------------CCEE-EECcHHHHHHHHHHHHHCCCcEEEEec
Confidence 3356678898 556775321 0 1233 456666644 55667666544555554
No 185
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=36.76 E-value=91 Score=29.07 Aligned_cols=57 Identities=12% Similarity=0.116 Sum_probs=43.2
Q ss_pred hhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEEEecC
Q 036516 479 MHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGILVHRG 538 (709)
Q Consensus 479 ~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIlvdrg 538 (709)
-.+.+.++.++++++.||+|...+. +|.........+.+.+++-++-++|| ++.|..
T Consensus 41 ~~~~l~~li~~~~~~~vVVGlP~~m--~g~~~~~~~~~~~f~~~L~~r~~lpv-~l~DER 97 (141)
T COG0816 41 DFNALLKLVKEYQVDTVVVGLPLNM--DGTEGPRAELARKFAERLKKRFNLPV-VLWDER 97 (141)
T ss_pred hHHHHHHHHHHhCCCEEEEecCcCC--CCCcchhHHHHHHHHHHHHHhcCCCE-EEEcCc
Confidence 5688999999999999999997643 34333333457888999988999998 556654
No 186
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=36.43 E-value=92 Score=28.52 Aligned_cols=59 Identities=10% Similarity=0.017 Sum_probs=43.2
Q ss_pred CChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEEEecC
Q 036516 477 ATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGILVHRG 538 (709)
Q Consensus 477 ~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIlvdrg 538 (709)
....+.+.+..++++++.||+|...+. ||.........+.+.+++-++-+.|| .++|..
T Consensus 34 ~~~~~~l~~~i~~~~~~~iVvGlP~~~--dG~~~~~a~~v~~f~~~L~~~~~~~v-~~~DEr 92 (130)
T TIGR00250 34 EPDWSRIEELLKEWTPDKIVVGLPLNM--DGTEGPLTERAQKFANRLEGRFGVPV-VLWDER 92 (130)
T ss_pred cHHHHHHHHHHHHcCCCEEEEeccCCC--CcCcCHHHHHHHHHHHHHHHHhCCCE-EEEcCC
Confidence 455788999999999999999987653 45543333457788888877778898 445554
No 187
>PRK06801 hypothetical protein; Provisional
Probab=35.51 E-value=1.1e+02 Score=32.15 Aligned_cols=110 Identities=12% Similarity=0.028 Sum_probs=73.5
Q ss_pred cceEEEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEEEecCCCCC
Q 036516 463 GHVVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGILVHRGQNKS 542 (709)
Q Consensus 463 ~~v~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIlvdrg~~~~ 542 (709)
++..|-.|...+ ..+...|++.|++.++..||.-..+.....+ -..+....+...++++.||++=-|.+...
T Consensus 16 ~~yaV~Afn~~n--~e~~~avi~AAe~~~~PvIl~~~~~~~~~~~-----~~~~~~~~~~~a~~~~vpV~lHlDH~~~~- 87 (286)
T PRK06801 16 HGYALGAFNVLD--SHFLRALFAAAKQERSPFIINIAEVHFKYIS-----LESLVEAVKFEAARHDIPVVLNLDHGLHF- 87 (286)
T ss_pred CCceEEEEeeCC--HHHHHHHHHHHHHHCCCEEEEeCcchhhcCC-----HHHHHHHHHHHHHHCCCCEEEECCCCCCH-
Confidence 456677777777 5889999999999999999998766543222 12578888999999999999988887521
Q ss_pred CCccc--CCCcceEEEEeeccCcChHHHHHHHHHH---hcCCCeE
Q 036516 543 NRPVY--TGELLYHIVMLFIGGADDREALAYSRRM---AEHPNTS 582 (709)
Q Consensus 543 ~~~~~--~~~~~~~V~~~f~Gg~ddreAl~~a~rm---a~~~~~~ 582 (709)
..+. -......| +..--..+++|-++.++++ |+..++.
T Consensus 88 -e~i~~Ai~~GftSV-m~D~S~l~~eeNi~~t~~v~~~a~~~gv~ 130 (286)
T PRK06801 88 -EAVVRALRLGFSSV-MFDGSTLEYEENVRQTREVVKMCHAVGVS 130 (286)
T ss_pred -HHHHHHHHhCCcEE-EEcCCCCCHHHHHHHHHHHHHHHHHcCCe
Confidence 0000 00011123 4433344568888877665 6667764
No 188
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=35.07 E-value=2.8e+02 Score=26.60 Aligned_cols=85 Identities=16% Similarity=0.185 Sum_probs=54.0
Q ss_pred eeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCCCCCCCCchhHHHHHHHHHhhhcCCCcEEEEEEeecChhhHH
Q 036516 558 LFIGGADDREALAYSRRMAEHPNTSLTVVWFITTDQNRPSTEMPDDHELDNQAFDEFKDSMVGNKIIFREEIVKDGIGTT 637 (709)
Q Consensus 558 ~f~Gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~v~y~e~~v~~g~~~~ 637 (709)
+..||. ..-...+++.|+++...++-++.= .. .++...++.+++++... .++.|...-+.|.+++.
T Consensus 4 litGG~-gglg~~la~~La~~~~~~~il~~r---~~--------~~~~~~~~~i~~l~~~g--~~v~~~~~Dv~d~~~v~ 69 (181)
T PF08659_consen 4 LITGGL-GGLGQSLARWLAERGARRLILLGR---SG--------APSAEAEAAIRELESAG--ARVEYVQCDVTDPEAVA 69 (181)
T ss_dssp EEETTT-SHHHHHHHHHHHHTT-SEEEEEES---SG--------GGSTTHHHHHHHHHHTT---EEEEEE--TTSHHHHH
T ss_pred EEECCc-cHHHHHHHHHHHHcCCCEEEEecc---CC--------CccHHHHHHHHHHHhCC--CceeeeccCccCHHHHH
Confidence 345554 568889999999999888777762 10 11223446778887642 37889999999999999
Q ss_pred HHHHhhhcCC---cEEEEecCC
Q 036516 638 QVIQAFAETF---DLFIVGKNH 656 (709)
Q Consensus 638 ~~i~~~~~~~---DLiiVG~~~ 656 (709)
+++.+...++ |-|+-...-
T Consensus 70 ~~~~~~~~~~~~i~gVih~ag~ 91 (181)
T PF08659_consen 70 AALAQLRQRFGPIDGVIHAAGV 91 (181)
T ss_dssp HHHHTSHTTSS-EEEEEE----
T ss_pred HHHHHHHhccCCcceeeeeeee
Confidence 9998886544 556666544
No 189
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=34.65 E-value=3.8e+02 Score=26.74 Aligned_cols=109 Identities=14% Similarity=0.146 Sum_probs=54.5
Q ss_pred hchhHHHHHHHHHHHhcCcceEEEEEEEEccCCCh--hHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHH
Q 036516 445 ASSTQLINAFTQFQRCYYGHVVVQHFTTIAPYATM--HDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRN 522 (709)
Q Consensus 445 ~~~~~i~~af~~~~~~~~~~v~v~~~~~vs~~~~~--~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~ 522 (709)
.....+.+.+++..++....+.+.. + ..+. ..++.+...++++|-+|+-.... + ....+
T Consensus 12 ~~~~~~~~~~~~~~~~~g~~~~~~~----~-~~~~~~~~~~i~~l~~~~vdgiii~~~~~---~----------~~~~~- 72 (268)
T cd06298 12 SYFAELARGIDDIATMYKYNIILSN----S-DNDKEKELKVLNNLLAKQVDGIIFMGGKI---S----------EEHRE- 72 (268)
T ss_pred hHHHHHHHHHHHHHHHcCCeEEEEe----C-CCCHHHHHHHHHHHHHhcCCEEEEeCCCC---c----------HHHHH-
Confidence 3446677777776554322233221 2 1122 23555556678999888732110 0 11222
Q ss_pred HhhcCCccEEEEEecCCCCCCCcccCCCcceEEEEeeccCcChHHHHH-HHHHHhcCCCeEEEEEE
Q 036516 523 VLHKAPCSVGILVHRGQNKSNRPVYTGELLYHIVMLFIGGADDREALA-YSRRMAEHPNTSLTVVW 587 (709)
Q Consensus 523 Vl~~apCsVgIlvdrg~~~~~~~~~~~~~~~~V~~~f~Gg~ddreAl~-~a~rma~~~~~~ltvl~ 587 (709)
.++++..|| |++|+.... .. ..+. +.|+.++-+ .+..+.++..-++.++.
T Consensus 73 ~l~~~~ipv-V~~~~~~~~-~~------------~~~v-~~d~~~~~~~~~~~l~~~g~~~i~~l~ 123 (268)
T cd06298 73 EFKRSPTPV-VLAGSVDED-NE------------LPSV-NIDYKKAAFEATELLIKNGHKKIAFIS 123 (268)
T ss_pred HHhcCCCCE-EEEccccCC-CC------------CCEE-EECcHHHHHHHHHHHHHcCCceEEEEe
Confidence 355677888 667774311 00 1222 566666655 44555565555665554
No 190
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=34.62 E-value=76 Score=35.26 Aligned_cols=54 Identities=9% Similarity=0.159 Sum_probs=38.0
Q ss_pred hHHHHHHHHHhhhcCCCc-EEEEEEee--cChhhHHHHHHhhh--cCCcEEEEecCCCC
Q 036516 605 ELDNQAFDEFKDSMVGNK-IIFREEIV--KDGIGTTQVIQAFA--ETFDLFIVGKNHDP 658 (709)
Q Consensus 605 ~~d~~~l~~~~~~~~~~~-v~y~e~~v--~~g~~~~~~i~~~~--~~~DLiiVG~~~~~ 658 (709)
....+.+...+.+++.-. ++|.-.+= +.+.|++++|+..+ +++|.+||||++|.
T Consensus 147 AairDIl~~~~rR~P~~~viv~pt~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGGGS 205 (440)
T COG1570 147 AALRDILHTLSRRFPSVEVIVYPTLVQGEGAAEEIVEAIERANQRGDVDVLIVARGGGS 205 (440)
T ss_pred HHHHHHHHHHHhhCCCCeEEEEeccccCCCcHHHHHHHHHHhhccCCCCEEEEecCcch
Confidence 455668888888877433 44543332 33678899998876 44999999999973
No 191
>COG2431 Predicted membrane protein [Function unknown]
Probab=34.44 E-value=5.6e+02 Score=26.77 Aligned_cols=46 Identities=9% Similarity=0.234 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHhHhhhCCCHHHHHHHHHHhhhhhhHHHHHHH
Q 036516 283 IILMSYLGKFTGVMVPSLFFGMSFLKASCLALIMCCRGIAEIAVYC 328 (709)
Q Consensus 283 ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~l~~~~ 328 (709)
.-++.+++-.++..+.+.+.++|+.++++++..++=.......+..
T Consensus 168 l~~i~ilssliGG~iaa~~l~lpl~~~lAmasG~GWYSlsG~ll~~ 213 (297)
T COG2431 168 LAFITLLSSLIGGLIAAFLLDLPLTTGLAMASGFGWYSLSGILLTE 213 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhccchhhhhhHHHhc
Confidence 3444556777888888899999999999998877766666655544
No 192
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=34.00 E-value=94 Score=35.65 Aligned_cols=72 Identities=14% Similarity=0.144 Sum_probs=39.5
Q ss_pred hHhhhhHHHHHHhhhccccccccch--hhHHH------HHHHHHHHHHHHHHHHHhHhhhCCCHHHHHHHHHHhhhhhhH
Q 036516 251 TSGFLLPVFCAISGIRMELYLINEK--SFIKI------EFIILMSYLGKFTGVMVPSLFFGMSFLKASCLALIMCCRGIA 322 (709)
Q Consensus 251 ~~~~flPlFF~~~G~~~d~~~l~~~--~~~~~------~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~ 322 (709)
...+++|---.-.|.+++-..+... ..... +...+++...|+.+. .-..++++++|++.+|.+.+.---+
T Consensus 101 ff~vLLPpiif~sgy~l~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~--~~~~~~~~f~d~L~fGaliSATDPV 178 (575)
T KOG1965|consen 101 FFLVLLPPIIFNSGYSLKKKQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGF--GLLIYDLSFKDCLAFGALISATDPV 178 (575)
T ss_pred HHHHhhchhhhcccceechhhhhhhhHHHHHhhhcceeeehhHHhhHHHHHhc--ccccccccHHHHHHHhhHhcccCch
Confidence 3556677666678888886655432 11100 001112222233332 2234579999999999988766544
Q ss_pred HH
Q 036516 323 EI 324 (709)
Q Consensus 323 ~l 324 (709)
..
T Consensus 179 tv 180 (575)
T KOG1965|consen 179 TV 180 (575)
T ss_pred HH
Confidence 43
No 193
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=33.92 E-value=1.4e+02 Score=31.40 Aligned_cols=70 Identities=16% Similarity=0.133 Sum_probs=54.3
Q ss_pred cceEEEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEEEecCC
Q 036516 463 GHVVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGILVHRGQ 539 (709)
Q Consensus 463 ~~v~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIlvdrg~ 539 (709)
.+..|-.|...+ ..+.+.|++.|++.++..||.-+.+.-...+ ...+....+...++++.||++=-|++.
T Consensus 14 ~~yAV~AfN~~n--~e~~~avi~AAee~~sPvIlq~s~~~~~~~~-----~~~~~~~~~~~a~~~~VPValHLDHg~ 83 (282)
T TIGR01858 14 GGYAVPAFNIHN--LETIQAVVETAAEMRSPVILAGTPGTFKHAG-----TEYIVALCSAASTTYNMPLALHLDHHE 83 (282)
T ss_pred cCCeEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEeCccHHhhCC-----HHHHHHHHHHHHHHCCCCEEEECCCCC
Confidence 445666777777 5889999999999999999998765533222 124778889999999999999888875
No 194
>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]
Probab=33.42 E-value=4.5e+02 Score=28.76 Aligned_cols=31 Identities=19% Similarity=0.490 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhhhcChHHHHhhhhhHHHHHH
Q 036516 34 FGMILHAFVLGVQIDLGLVKHIRKRAVIIGI 64 (709)
Q Consensus 34 iGli~~lF~~Gle~d~~~l~~~~~~~~~i~~ 64 (709)
-|..+.|+-.|.+.|++.+++..++...+++
T Consensus 117 ~gl~~~~ls~g~~~~~~~~~~~~~rP~~~~l 147 (371)
T KOG2718|consen 117 PGLLSNMLSFGIKLDMDLFAGMIKRPTPLAL 147 (371)
T ss_pred cHHHHHHHHHhcCccHHHHhhHhhCCcceee
Confidence 6778889999999999999999888876543
No 195
>KOG2575 consensus Glucosyltransferase - Alg6p [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=33.23 E-value=7e+02 Score=27.57 Aligned_cols=151 Identities=21% Similarity=0.272 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHhchhHhHHHHHHHHhcCCCCChhhHHHhhhhhhhHhhhhHHHHHHhhhccccccccchhhHHHHHHH
Q 036516 205 ICIVLVTTILGTLVGQNSILTAFFFGLCLPDGPPLGTQLVQKLDFFTSGFLLPVFCAISGIRMELYLINEKSFIKIEFII 284 (709)
Q Consensus 205 l~~~l~~~~~~~~~G~~~~lGaf~~Gl~ip~~~~~~~~l~~kl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~ii 284 (709)
+.+-+..+.++..+--..++|++.+-+++.-. +.| ...-.|+|+...| +..-..+.+. . .-++.+
T Consensus 196 isLGl~~~ai~~ll~~~~~~as~~F~LAlnyK---------QMe---LY~A~pfF~fLLg-~c~k~k~~~~-f-~ri~~i 260 (510)
T KOG2575|consen 196 ISLGLTLYAIAALLKNFYVLASVLFVLALNYK---------QME---LYHALPFFAFLLG-SCLKPKLFNS-F-ARIIKI 260 (510)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHH---------HHH---HHhchHHHHHHHH-HHhcccchHH-H-HHHHHH
Confidence 33445556666677777899999999888752 111 2345677777888 5544444331 2 223444
Q ss_pred HHHHHHHHHHHHHhHhhhCCCHHHHHHHHHHhhhhhhHHHHHHHhhhccC-------ccchhHHHHHHHHHHHHHHHHHH
Q 036516 285 LMSYLGKFTGVMVPSLFFGMSFLKASCLALIMCCRGIAEIAVYCMWKDRK-------IITNQIFAIMITNMVIITGISTT 357 (709)
Q Consensus 285 ~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~l~~~~~~~~~~-------~i~~~~~~~lv~~~ll~t~i~~p 357 (709)
.+++++-++-.+++-.+.+....+-+.= +.=-.||.+|=-+++.|-... +...+....+.++..+ ....|.
T Consensus 261 a~~Vv~TF~iiw~P~~~~~~~~~qvl~R-lFPf~RGlfEDKVANfWCt~n~~~K~k~~ft~q~~~~iSl~~Tl-i~~LPs 338 (510)
T KOG2575|consen 261 ALAVVGTFVIIWLPFLLSGDTALQVLHR-LFPFARGLFEDKVANFWCTFNVFLKIKELFTQQQLQVISLAATL-IGSLPS 338 (510)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHH-hCchhcchhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHH-HHHhHH
Confidence 5556677778888876666444433221 223468999988898886433 3334444444333333 233577
Q ss_pred HHHhhcCccccccch
Q 036516 358 IVGYLYDPSRRYKLD 372 (709)
Q Consensus 358 lv~~ly~p~~~~~~~ 372 (709)
.+....+|+++-..|
T Consensus 339 ~v~l~L~P~~~~f~~ 353 (510)
T KOG2575|consen 339 MVVLFLRPTNKGFLY 353 (510)
T ss_pred HHHHhhcccccchhh
Confidence 778878888875444
No 196
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=32.34 E-value=4.5e+02 Score=26.53 Aligned_cols=17 Identities=6% Similarity=-0.183 Sum_probs=12.7
Q ss_pred HHHHHHhhcCccEEEec
Q 036516 482 DVCTLALDKRVVIIIVP 498 (709)
Q Consensus 482 dI~~~A~e~~~dlII~g 498 (709)
+..+.+.++++|-||+-
T Consensus 48 ~~i~~~~~~~vdgiI~~ 64 (268)
T cd06306 48 AQLEDCAAWGADAILLG 64 (268)
T ss_pred HHHHHHHHcCCCEEEEc
Confidence 46666778899988775
No 197
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=32.09 E-value=5.2e+02 Score=25.67 Aligned_cols=109 Identities=14% Similarity=0.043 Sum_probs=54.8
Q ss_pred chhHHHHHHHHHHHhcCcceEEEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhh
Q 036516 446 SSTQLINAFTQFQRCYYGHVVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLH 525 (709)
Q Consensus 446 ~~~~i~~af~~~~~~~~~~v~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~ 525 (709)
....+.+.+++..++. +..+.-. ......-.++.++.+.++++|-||+-.... + ... -+.++
T Consensus 13 ~~~~~~~~i~~~~~~~--g~~~~~~--~~~~~~~~~~~i~~~~~~~vdgiii~~~~~---~----------~~~-~~~~~ 74 (266)
T cd06278 13 FYSELLEALSRALQAR--GYQPLLI--NTDDDEDLDAALRQLLQYRVDGVIVTSGTL---S----------SEL-AEECR 74 (266)
T ss_pred hHHHHHHHHHHHHHHC--CCeEEEE--cCCCCHHHHHHHHHHHHcCCCEEEEecCCC---C----------HHH-HHHHh
Confidence 3455666666655432 3333321 121122455677777889999777632110 0 011 23356
Q ss_pred cCCccEEEEEecCCCCCCCcccCCCcceEEEEeeccCcChHHHHH-HHHHHhcCCCeEEEEEE
Q 036516 526 KAPCSVGILVHRGQNKSNRPVYTGELLYHIVMLFIGGADDREALA-YSRRMAEHPNTSLTVVW 587 (709)
Q Consensus 526 ~apCsVgIlvdrg~~~~~~~~~~~~~~~~V~~~f~Gg~ddreAl~-~a~rma~~~~~~ltvl~ 587 (709)
+...|| |++|+.... . .+.++ +.|+.++-. .+..+.++..-++-++.
T Consensus 75 ~~~ipv-V~~~~~~~~-~------------~~~~v-~~d~~~~g~~~~~~l~~~g~~~i~~i~ 122 (266)
T cd06278 75 RNGIPV-VLINRYVDG-P------------GVDAV-CSDNYEAGRLAAELLLAKGCRRIAFIG 122 (266)
T ss_pred hcCCCE-EEECCccCC-C------------CCCEE-EEChHHHHHHHHHHHHHCCCceEEEEc
Confidence 678887 556775321 0 01233 456665555 34555665555655554
No 198
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=31.79 E-value=81 Score=28.78 Aligned_cols=36 Identities=19% Similarity=0.237 Sum_probs=27.2
Q ss_pred EEEEEEccCCChhHHHHHHHhhcCccEEEecCCccc
Q 036516 468 QHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQW 503 (709)
Q Consensus 468 ~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~ 503 (709)
.-+-++-|...||..|.++|++-++|++|-|..+..
T Consensus 72 ~lIYSiRPP~El~~~il~lA~~v~adlii~pL~~e~ 107 (127)
T PF03686_consen 72 DLIYSIRPPPELQPPILELAKKVGADLIIRPLGGES 107 (127)
T ss_dssp EEEEEES--TTSHHHHHHHHHHHT-EEEEE-BTTB-
T ss_pred cEEEEeCCChHHhHHHHHHHHHhCCCEEEECCCCCC
Confidence 345578889999999999999999999999997664
No 199
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=31.75 E-value=1.7e+02 Score=30.63 Aligned_cols=104 Identities=13% Similarity=0.096 Sum_probs=68.8
Q ss_pred cceEEEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEEEecCCCCC
Q 036516 463 GHVVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGILVHRGQNKS 542 (709)
Q Consensus 463 ~~v~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIlvdrg~~~~ 542 (709)
.+..|-.+...+ -.+.+.+++.|++.+..+||.-+.+.....| -..+....++..++++.||++=-|.+...
T Consensus 11 ~~yaV~AfN~~n--~e~~~avi~AAe~~~sPvIi~~~~~~~~~~~-----~~~~~~~~~~~a~~~~VPV~lHLDH~~~~- 82 (276)
T cd00947 11 GGYAVGAFNINN--LETLKAILEAAEETRSPVILQISEGAIKYAG-----LELLVAMVKAAAERASVPVALHLDHGSSF- 82 (276)
T ss_pred CCceEEEEeeCC--HHHHHHHHHHHHHhCCCEEEEcCcchhhhCC-----HHHHHHHHHHHHHHCCCCEEEECCCCCCH-
Confidence 456666776777 4799999999999999999988765432222 12478888899999999999988887531
Q ss_pred CCccc--CCCcceEEEEeeccCcChHHHHHHHHHHh
Q 036516 543 NRPVY--TGELLYHIVMLFIGGADDREALAYSRRMA 576 (709)
Q Consensus 543 ~~~~~--~~~~~~~V~~~f~Gg~ddreAl~~a~rma 576 (709)
..+. -.....+| |+..-.-+.+|-++..++++
T Consensus 83 -~~i~~ai~~GftSV-MiD~S~l~~eeNi~~t~~vv 116 (276)
T cd00947 83 -ELIKRAIRAGFSSV-MIDGSHLPFEENVAKTKEVV 116 (276)
T ss_pred -HHHHHHHHhCCCEE-EeCCCCCCHHHHHHHHHHHH
Confidence 0000 00011234 55554556677777665553
No 200
>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=31.38 E-value=70 Score=30.37 Aligned_cols=129 Identities=17% Similarity=0.250 Sum_probs=63.3
Q ss_pred EEEEeeccCcChHHHHHHHHHHhcCCCeEEEEEEeee---cCCCCCC-------CCCCCchhHHHHHHHHHhhhcCCCcE
Q 036516 554 HIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFIT---TDQNRPS-------TEMPDDHELDNQAFDEFKDSMVGNKI 623 (709)
Q Consensus 554 ~V~~~f~Gg~ddreAl~~a~rma~~~~~~ltvl~v~~---~~~~~~~-------~~~~~~~~~d~~~l~~~~~~~~~~~v 623 (709)
+|+++|.||+|+..|. -+-+..+-.++++-++- ++.. .. .-+..--++|++.+++-.....
T Consensus 2 ~v~vLfSGGKDSSLaA----~iL~klgyev~LVTvnFGv~d~~k-~A~~tA~~lgF~h~vl~Ldr~ile~A~em~i---- 72 (198)
T COG2117 2 DVYVLFSGGKDSSLAA----LILDKLGYEVELVTVNFGVLDSWK-YARETAAILGFPHEVLQLDREILEDAVEMII---- 72 (198)
T ss_pred ceEEEecCCCchhHHH----HHHHHhCCCcEEEEEEeccccchh-hHHHHHHHhCCCcceeccCHHHHHHHHHHHH----
Confidence 5899999999987654 44455555556655542 1110 00 0000112345555554433211
Q ss_pred EEEEEeecChhhHH--HHHHhhhc-CCcEEEEecCCCCCcccc-----cccCcC-C---CCCccch---hhhhhhcCCCC
Q 036516 624 IFREEIVKDGIGTT--QVIQAFAE-TFDLFIVGKNHDPCCKAT-----LGLSEW-I---EYPELGI---LGDTLVNSNDE 688 (709)
Q Consensus 624 ~y~e~~v~~g~~~~--~~i~~~~~-~~DLiiVG~~~~~~~~~~-----~gl~~w-~---e~~eLG~---igd~las~d~~ 688 (709)
++....++-+-+ .+++.++. .||.+.=|++++..-|.+ +.|.|- + =||-+|. .=|-|+|.
T Consensus 73 --edg~P~~aIq~iH~~alE~~A~r~~~~iaDGTRRDDrvP~ls~~~~qSLEdR~nv~Yi~PL~G~G~kti~~Lv~~--- 147 (198)
T COG2117 73 --EDGYPRNAIQYIHEMALEALASREVDRIADGTRRDDRVPKLSRSEAQSLEDRLNVQYIRPLLGLGYKTIRRLVSA--- 147 (198)
T ss_pred --hcCCCchHHHHHHHHHHHHHHHHHHHHHcCCCcccccCccccHHHHhhHHHhcCceeecccccccHHHHHHHHHH---
Confidence 122222221111 12222233 699999999998777763 344442 1 2666663 22555554
Q ss_pred cceEEEeecC
Q 036516 689 FSVLVVQQQP 698 (709)
Q Consensus 689 ~SvLvvqq~~ 698 (709)
.+++.|..
T Consensus 148 --~f~~e~~~ 155 (198)
T COG2117 148 --IFILEEGP 155 (198)
T ss_pred --Heeeeccc
Confidence 44455543
No 201
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=30.66 E-value=1.1e+02 Score=32.04 Aligned_cols=28 Identities=32% Similarity=0.605 Sum_probs=22.1
Q ss_pred EEeecChhhHHHHHHhhhcCCcEEEEecCCC
Q 036516 627 EEIVKDGIGTTQVIQAFAETFDLFIVGKNHD 657 (709)
Q Consensus 627 e~~v~~g~~~~~~i~~~~~~~DLiiVG~~~~ 657 (709)
|..+.|| .+.+++..+.||+||+=-..+
T Consensus 133 ~i~i~Dg---~~~v~~~~~~fDvIi~D~tdp 160 (282)
T COG0421 133 EIIIDDG---VEFLRDCEEKFDVIIVDSTDP 160 (282)
T ss_pred EEEeccH---HHHHHhCCCcCCEEEEcCCCC
Confidence 6777887 788888777899999976544
No 202
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=30.30 E-value=1.8e+02 Score=30.67 Aligned_cols=70 Identities=11% Similarity=0.047 Sum_probs=53.1
Q ss_pred cceEEEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEEEecCC
Q 036516 463 GHVVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGILVHRGQ 539 (709)
Q Consensus 463 ~~v~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIlvdrg~ 539 (709)
.+..|-.|...+ ..+.+.|++.|+|.+...|+.-..+.-...+ ...+........++++.||++=-|.+.
T Consensus 16 ~~yAV~AfN~~n--~e~~~avi~AAee~~sPvIlq~s~~~~~~~~-----~~~~~~~~~~~a~~~~VPValHLDHg~ 85 (286)
T PRK12738 16 NGYAVPAFNIHN--AETIQAILEVCSEMRSPVILAGTPGTFKHIA-----LEEIYALCSAYSTTYNMPLALHLDHHE 85 (286)
T ss_pred CCceEEEEEeCC--HHHHHHHHHHHHHHCCCEEEEcCcchhhhCC-----HHHHHHHHHHHHHHCCCCEEEECCCCC
Confidence 455666666666 5889999999999999999987654432111 124678888999999999999888875
No 203
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=29.52 E-value=1.5e+02 Score=30.74 Aligned_cols=111 Identities=14% Similarity=0.092 Sum_probs=58.4
Q ss_pred hchhHHHHHHHHHHHhcCcceEEEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHh
Q 036516 445 ASSTQLINAFTQFQRCYYGHVVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVL 524 (709)
Q Consensus 445 ~~~~~i~~af~~~~~~~~~~v~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl 524 (709)
....+++..+++..++. +..+-- .-+..+.-.+...+...++++|=+|+-..... ..-.++..
T Consensus 14 pff~~ii~gIe~~a~~~--Gy~l~l--~~t~~~~~~e~~i~~l~~~~vDGiI~~s~~~~-------------~~~l~~~~ 76 (279)
T PF00532_consen 14 PFFAEIIRGIEQEAREH--GYQLLL--CNTGDDEEKEEYIELLLQRRVDGIILASSEND-------------DEELRRLI 76 (279)
T ss_dssp HHHHHHHHHHHHHHHHT--TCEEEE--EEETTTHHHHHHHHHHHHTTSSEEEEESSSCT-------------CHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHc--CCEEEE--ecCCCchHHHHHHHHHHhcCCCEEEEecccCC-------------hHHHHHHH
Confidence 44566777777765442 233221 22222233336777888999998888743221 01133444
Q ss_pred hcCCccEEEEEecCCCCCCCcccCCCcceEEEEeeccCcChHHHHH-HHHHHhcCCCeE-EEEEE
Q 036516 525 HKAPCSVGILVHRGQNKSNRPVYTGELLYHIVMLFIGGADDREALA-YSRRMAEHPNTS-LTVVW 587 (709)
Q Consensus 525 ~~apCsVgIlvdrg~~~~~~~~~~~~~~~~V~~~f~Gg~ddreAl~-~a~rma~~~~~~-ltvl~ 587 (709)
+. ..|| |++||....... ...| ..|+.+|-. .++.+.++..-+ +-++.
T Consensus 77 ~~-~iPv-V~~~~~~~~~~~-------~~~V------~~D~~~a~~~a~~~Li~~Gh~~~I~~i~ 126 (279)
T PF00532_consen 77 KS-GIPV-VLIDRYIDNPEG-------VPSV------YIDNYEAGYEATEYLIKKGHRRPIAFIG 126 (279)
T ss_dssp HT-TSEE-EEESS-SCTTCT-------SCEE------EEEHHHHHHHHHHHHHHTTCCSTEEEEE
T ss_pred Hc-CCCE-EEEEeccCCccc-------CCEE------EEcchHHHHHHHHHHHhcccCCeEEEEe
Confidence 44 7887 678886432100 1123 467777765 456666665555 54443
No 204
>PRK12933 secD preprotein translocase subunit SecD; Reviewed
Probab=29.30 E-value=9.8e+02 Score=28.03 Aligned_cols=16 Identities=25% Similarity=0.293 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHhh
Q 036516 174 IVIFLVRPLTMRIVSK 189 (709)
Q Consensus 174 ~~~~v~r~~~~~i~~~ 189 (709)
..+++.|+++.|+.++
T Consensus 581 tAi~vtr~l~~~~~~~ 596 (604)
T PRK12933 581 TGIFASRALINLVYGR 596 (604)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 3567778888777655
No 205
>PRK09903 putative transporter YfdV; Provisional
Probab=28.85 E-value=6.5e+02 Score=26.58 Aligned_cols=86 Identities=15% Similarity=0.186 Sum_probs=52.2
Q ss_pred HhHHHHHHHHhcCCCCChhhHHHhhhhhhhHhhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHhHh-
Q 036516 222 SILTAFFFGLCLPDGPPLGTQLVQKLDFFTSGFLLPVFCAISGIRMELYLINEKSFIKIEFIILMSYLGKFTGVMVPSL- 300 (709)
Q Consensus 222 ~~lGaf~~Gl~ip~~~~~~~~l~~kl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~- 300 (709)
+++.-...|..+.+...+.++-.+.++.++..+.+|......-.+.+.+.+... +.. .+...+.++.-++.+++.++
T Consensus 11 pif~ii~lG~~~~r~~~~~~~~~~~ls~lv~~v~lPalif~s~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~ 88 (314)
T PRK09903 11 PIIVIMLLGYFSGRRETFSEDQARAFNKLVLNYALPAALFVSITRANREMIFAD-TRL-TLVSLVVIVGCFFFSWFGCYK 88 (314)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHhh-hhH-HHHHHHHHHHHHHHHHHHHHH
Confidence 444555667777776667777788899999999999998877777765443221 221 22222333333344444443
Q ss_pred hhCCCHHHH
Q 036516 301 FFGMSFLKA 309 (709)
Q Consensus 301 ~~~~~~~~~ 309 (709)
+.+.+.++.
T Consensus 89 ~~~~~~~~~ 97 (314)
T PRK09903 89 FFKRTHAEA 97 (314)
T ss_pred HhcCCcchh
Confidence 556665554
No 206
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=28.82 E-value=1.9e+02 Score=27.36 Aligned_cols=86 Identities=16% Similarity=0.273 Sum_probs=46.3
Q ss_pred EEEEeeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCCCCCCCCchhHHHHHHHHHhhhcCCCcEEEEEEeecCh
Q 036516 554 HIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFITTDQNRPSTEMPDDHELDNQAFDEFKDSMVGNKIIFREEIVKDG 633 (709)
Q Consensus 554 ~V~~~f~Gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~v~y~e~~v~~g 633 (709)
+|++.+.||.|+--++.++.+. +-++..+++..... . ..+.+.++++..+.. . ..|... ++
T Consensus 1 kvlv~~SGG~DS~~~~~~~~~~----~~~v~~~~~~~~~~------~----~~~~~~~~~~~~~~g-~-~~~~~~--~~- 61 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAKKE----GYEVHALSFDYGQR------H----AKEEEAAKLIAEKLG-P-STYVPA--RN- 61 (169)
T ss_pred CEEEEecCcHHHHHHHHHHHHc----CCcEEEEEEECCCC------C----hhHHHHHHHHHHHHC-C-CEEEeC--cC-
Confidence 3789999999999999888763 23566666653211 0 112234444443332 1 112111 11
Q ss_pred hhHHHHHHhhh--cCCcEEEEecCCCC
Q 036516 634 IGTTQVIQAFA--ETFDLFIVGKNHDP 658 (709)
Q Consensus 634 ~~~~~~i~~~~--~~~DLiiVG~~~~~ 658 (709)
......+.+.+ .++|-++.|-+.+.
T Consensus 62 ~~~~~~l~~~a~~~g~~~i~~G~~~~d 88 (169)
T cd01995 62 LIFLSIAAAYAEALGAEAIIIGVNAED 88 (169)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeeccCc
Confidence 11223333332 47899999988754
No 207
>TIGR02057 PAPS_reductase phosphoadenosine phosphosulfate reductase, thioredoxin dependent. Requiring thioredoxin as an electron donor, phosphoadenosine phosphosulfate reductase catalyzes the reduction of 3'-phosphoadenylylsulfate (PAPS) to sulfite and phospho-adenosine-phosphate (PAP). Found in enterobacteria, cyanobacteria, and yeast, PAPS reductase is related to a group of plant (TIGR00424) and bacterial (TIGR02055) enzymes preferring 5'-adenylylsulfate (APS) over PAPS as a substrate for reduction to sulfite.
Probab=28.52 E-value=4.6e+02 Score=26.45 Aligned_cols=38 Identities=18% Similarity=0.155 Sum_probs=29.4
Q ss_pred EEEEeeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCC
Q 036516 554 HIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFITTDQN 594 (709)
Q Consensus 554 ~V~~~f~Gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~ 594 (709)
++++.|.||+|+--.|.++.+..+ + .+.|+.+.+..++
T Consensus 27 ~~~~s~S~Gkds~VlL~l~~~~~~-~--~i~vv~vDTg~~f 64 (226)
T TIGR02057 27 GLVQTSAFGIQALVTLHLLSSISE-P--MIPVIFIDTLYHF 64 (226)
T ss_pred CEEEEecCCHHHHHHHHHHHHhhC-C--CCCEEEEeCCCCC
Confidence 588999999999999999998762 3 3667877665444
No 208
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=28.04 E-value=52 Score=28.71 Aligned_cols=23 Identities=13% Similarity=0.306 Sum_probs=20.3
Q ss_pred CChhHHHHHHHhhcCccEEEecC
Q 036516 477 ATMHDDVCTLALDKRVVIIIVPF 499 (709)
Q Consensus 477 ~~~~~dI~~~A~e~~~dlII~g~ 499 (709)
.+-++++++.|+++++|++|+|-
T Consensus 48 ~~d~~~l~~~a~~~~idlvvvGP 70 (100)
T PF02844_consen 48 ITDPEELADFAKENKIDLVVVGP 70 (100)
T ss_dssp TT-HHHHHHHHHHTTESEEEESS
T ss_pred CCCHHHHHHHHHHcCCCEEEECC
Confidence 46789999999999999999995
No 209
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=28.03 E-value=6.7e+02 Score=26.77 Aligned_cols=110 Identities=12% Similarity=0.073 Sum_probs=56.3
Q ss_pred chhHHHHHHHHHHHhcCcceEEEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhh
Q 036516 446 SSTQLINAFTQFQRCYYGHVVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLH 525 (709)
Q Consensus 446 ~~~~i~~af~~~~~~~~~~v~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~ 525 (709)
...++++.+++..++..-.+.+.... .+ ..-.+...+...++++|=||+-.- . ...-..+.++
T Consensus 72 ~~~~i~~gi~~~~~~~gy~~~l~~~~-~~--~~~e~~~~~~l~~~~vdGiIi~~~-~-------------~~~~~~~~l~ 134 (333)
T COG1609 72 FFAEILKGIEEAAREAGYSLLLANTD-DD--PEKEREYLETLLQKRVDGLILLGE-R-------------PNDSLLELLA 134 (333)
T ss_pred hHHHHHHHHHHHHHHcCCEEEEECCC-CC--HHHHHHHHHHHHHcCCCEEEEecC-C-------------CCHHHHHHHH
Confidence 34556666666554432223332211 11 234456777788888887666531 1 0112345566
Q ss_pred cCCccEEEEEecCCCCCCCcccCCCcceEEEEeeccCcChHHHHHHH-HHHhcCCCeEEEEEE
Q 036516 526 KAPCSVGILVHRGQNKSNRPVYTGELLYHIVMLFIGGADDREALAYS-RRMAEHPNTSLTVVW 587 (709)
Q Consensus 526 ~apCsVgIlvdrg~~~~~~~~~~~~~~~~V~~~f~Gg~ddreAl~~a-~rma~~~~~~ltvl~ 587 (709)
+..+|+ |++||.... .. .+++ +.|++++...| ..+.+...=++.++.
T Consensus 135 ~~~~P~-V~i~~~~~~-~~------------~~~V-~~Dn~~~~~~a~~~L~~~G~~~i~~i~ 182 (333)
T COG1609 135 AAGIPV-VVIDRSPPG-LG------------VPSV-GIDNFAGAYLATEHLIELGHRRIAFIG 182 (333)
T ss_pred hcCCCE-EEEeCCCcc-CC------------CCEE-EEChHHHHHHHHHHHHHCCCceEEEEe
Confidence 779998 667885421 10 1122 56777666643 444555444555554
No 210
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=27.90 E-value=1.9e+02 Score=30.42 Aligned_cols=70 Identities=13% Similarity=0.114 Sum_probs=53.8
Q ss_pred cceEEEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEEEecCC
Q 036516 463 GHVVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGILVHRGQ 539 (709)
Q Consensus 463 ~~v~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIlvdrg~ 539 (709)
++..|-.|...+ -.+.+.|++.|++.+...||.-+.+.-..-|. ..+........++++.||++=-|.+.
T Consensus 16 ~~yaV~AfN~~n--~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~-----~~~~~~~~~~A~~~~VPV~lHLDHg~ 85 (284)
T PRK09195 16 GGYAVPAFNIHN--LETMQVVVETAAELHSPVIIAGTPGTFSYAGT-----EYLLAIVSAAAKQYHHPLALHLDHHE 85 (284)
T ss_pred cCceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEcChhHHhhCCH-----HHHHHHHHHHHHHCCCCEEEECCCCC
Confidence 455666676676 58999999999999999999887654322221 24778888999999999999888875
No 211
>TIGR02185 Trep_Strep conserved hypothetical integral membrane protein TIGR02185. This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C-terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae R6.
Probab=27.87 E-value=5.8e+02 Score=24.92 Aligned_cols=85 Identities=13% Similarity=0.174 Sum_probs=41.2
Q ss_pred chhHhHHHHHHHHhcCCCCChhhHHHhhhhh-----h-hHhhhhHHHHHHhhhcccc----------ccccch-hhHHHH
Q 036516 219 GQNSILTAFFFGLCLPDGPPLGTQLVQKLDF-----F-TSGFLLPVFCAISGIRMEL----------YLINEK-SFIKIE 281 (709)
Q Consensus 219 G~~~~lGaf~~Gl~ip~~~~~~~~l~~kl~~-----~-~~~~flPlFF~~~G~~~d~----------~~l~~~-~~~~~~ 281 (709)
-...+++++++=++...+. .++.....+.. + ..+-++|+||..-...-+. ..+... +.+...
T Consensus 84 ~~~~ii~gliaeli~~~g~-Yks~~~~~ia~~~~~~~~~~g~~~p~~~~~d~y~~~~~~~~~~~~y~~~~~~~~~~~~~~ 162 (189)
T TIGR02185 84 IISSIIGGLLADIIASTGG-YKNKRKVTIAYVLFFLLVAMGPILPIWLFKDEYIAFFAARGDSAEYIDQYIKYVSAIWAV 162 (189)
T ss_pred HHHHHHHHHHHHHHHHhCC-cccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHcCCcHHHHHHHHHhcchHHHH
Confidence 3345666777777776542 22222111111 1 1333578887533322111 111111 222244
Q ss_pred HHHHHHHHHHHHHHHHhHhhhCC
Q 036516 282 FIILMSYLGKFTGVMVPSLFFGM 304 (709)
Q Consensus 282 ~ii~~~~~~K~~~~~l~~~~~~~ 304 (709)
+.++...++=++|+++..+.+|.
T Consensus 163 ~~~~~t~v~~~iG~~iG~kllkK 185 (189)
T TIGR02185 163 IMIVLTAVAGIAGVLIGKKLLKK 185 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666778888888777653
No 212
>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree.
Probab=27.87 E-value=6.1e+02 Score=25.16 Aligned_cols=50 Identities=16% Similarity=-0.002 Sum_probs=26.1
Q ss_pred hchhHHHHHHHHHHHhcCcceEEEEEEEEccCCChhHHHHHHHhhcCccEEEe
Q 036516 445 ASSTQLINAFTQFQRCYYGHVVVQHFTTIAPYATMHDDVCTLALDKRVVIIIV 497 (709)
Q Consensus 445 ~~~~~i~~af~~~~~~~~~~v~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~ 497 (709)
....++.+.+++..++. +..+.....-. -.+-..++.+....+++|-||+
T Consensus 12 ~~~~~i~~gi~~~~~~~--g~~~~~~~~~~-~~~~~~~~i~~l~~~~vdgiii 61 (260)
T cd06286 12 PYFSQLVDGIEKAALKH--GYKVVLLQTNY-DKEKELEYLELLKTKQVDGLIL 61 (260)
T ss_pred chHHHHHHHHHHHHHHc--CCEEEEEeCCC-ChHHHHHHHHHHHHcCCCEEEE
Confidence 34566777777765432 33332221111 0122335666677888886665
No 213
>PF13194 DUF4010: Domain of unknown function (DUF4010)
Probab=27.74 E-value=6.3e+02 Score=25.24 Aligned_cols=26 Identities=23% Similarity=0.370 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHhchhHhH-HHHHHHHh
Q 036516 207 IVLVTTILGTLVGQNSIL-TAFFFGLC 232 (709)
Q Consensus 207 ~~l~~~~~~~~~G~~~~l-Gaf~~Gl~ 232 (709)
+.+...+..+++|-..+. .+++.|++
T Consensus 138 i~~~~~~~~~~~G~~Gl~~~a~isGl~ 164 (211)
T PF13194_consen 138 ILLLSRAAQRWFGDSGLYALAAISGLA 164 (211)
T ss_pred HHHHHHHHHHHHChhhHHHHHHHHHhh
Confidence 344555666788877754 67888874
No 214
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=27.28 E-value=1e+02 Score=34.43 Aligned_cols=54 Identities=11% Similarity=0.142 Sum_probs=36.8
Q ss_pred hHHHHHHHHHhhhcCCCcEEEEEEeec---ChhhHHHHHHhhhc-CCcEEEEecCCCC
Q 036516 605 ELDNQAFDEFKDSMVGNKIIFREEIVK---DGIGTTQVIQAFAE-TFDLFIVGKNHDP 658 (709)
Q Consensus 605 ~~d~~~l~~~~~~~~~~~v~y~e~~v~---~g~~~~~~i~~~~~-~~DLiiVG~~~~~ 658 (709)
....++++..+.+++.-++.+-...|- ...++.++|+.... +||.||++|+||.
T Consensus 147 Aa~~D~~~~~~~r~p~~~~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii~RGGGS 204 (438)
T PRK00286 147 AAIRDILTVLRRRFPLVEVIIYPTLVQGEGAAASIVAAIERANARGEDVLIVARGGGS 204 (438)
T ss_pred HHHHHHHHHHHhcCCCCeEEEecCcCcCccHHHHHHHHHHHhcCCCCCEEEEecCCCC
Confidence 445678888887765334544455552 24567888887754 3899999999984
No 215
>PRK04148 hypothetical protein; Provisional
Probab=27.22 E-value=91 Score=28.81 Aligned_cols=34 Identities=24% Similarity=0.272 Sum_probs=30.1
Q ss_pred EEEEccCCChhHHHHHHHhhcCccEEEecCCccc
Q 036516 470 FTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQW 503 (709)
Q Consensus 470 ~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~ 503 (709)
.-++-|...|+..|.++|++-++|++|-|..+..
T Consensus 81 iysirpp~el~~~~~~la~~~~~~~~i~~l~~e~ 114 (134)
T PRK04148 81 IYSIRPPRDLQPFILELAKKINVPLIIKPLSGEE 114 (134)
T ss_pred EEEeCCCHHHHHHHHHHHHHcCCCEEEEcCCCCC
Confidence 4467788999999999999999999999997764
No 216
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=27.04 E-value=1.9e+02 Score=31.25 Aligned_cols=70 Identities=14% Similarity=0.101 Sum_probs=55.2
Q ss_pred cceEEEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCC-ccEEEEEecCC
Q 036516 463 GHVVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAP-CSVGILVHRGQ 539 (709)
Q Consensus 463 ~~v~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~ap-CsVgIlvdrg~ 539 (709)
.+..|-.|...+ ..+.+.|++.|++.++.+||.-+.+.....| ...+....+...++++ .||++=-|.+.
T Consensus 16 ~~yAVgAfN~~n--~e~~~avi~AAee~~sPvIiq~s~~~~~~~g-----~~~~~~~~~~~a~~~~~VPValHLDHg~ 86 (347)
T PRK09196 16 HGYGVPAFNVNN--LEQVQAIMEAADETDSPVILQASAGARKYAG-----EPFLRHLILAAVEEYPHIPVVMHQDHGN 86 (347)
T ss_pred cCceEEEeeeCC--HHHHHHHHHHHHHhCCCEEEECCccHhhhCC-----HHHHHHHHHHHHHhCCCCcEEEECCCCC
Confidence 456777777777 5899999999999999999998766533222 2357888888889997 99999888875
No 217
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=26.92 E-value=2.7e+02 Score=30.17 Aligned_cols=76 Identities=9% Similarity=0.051 Sum_probs=55.4
Q ss_pred cceEEEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccC-Ccc-eec---------cchhhHHHHHHHhhcCCccE
Q 036516 463 GHVVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGV-GGI-LES---------TDLSIRALNRNVLHKAPCSV 531 (709)
Q Consensus 463 ~~v~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~-~g~-~~~---------~~~~~~~~~~~Vl~~apCsV 531 (709)
.+..|-.|...+ -.+.+.|++.|++.+...||.-+.+.-.. .|. .+. ....+....+...+++++||
T Consensus 25 ~~yAVgAfNv~n--~e~~~Avi~AAEe~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~~Ae~a~VPV 102 (357)
T TIGR01520 25 NNFAIPAINCTS--SSTINAALEAAADVKSPIIIQFSNGGAAFIAGKGVKDEVPQGASILGAIAGAHHVHSIAEHYGVPV 102 (357)
T ss_pred CCceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEcCcchhhhcCCcccccccchhhhhhhHHHHHHHHHHHHHHCCCCE
Confidence 456666776776 58899999999999999999988765322 210 110 11236778889999999999
Q ss_pred EEEEecCCC
Q 036516 532 GILVHRGQN 540 (709)
Q Consensus 532 gIlvdrg~~ 540 (709)
++=-|.+..
T Consensus 103 alHLDHg~~ 111 (357)
T TIGR01520 103 VLHTDHCAK 111 (357)
T ss_pred EEECCCCCC
Confidence 998888763
No 218
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=26.83 E-value=24 Score=30.75 Aligned_cols=35 Identities=20% Similarity=0.236 Sum_probs=27.4
Q ss_pred eecChhhHHHHHHhhhcCCcEEEEecCCCCCcccccccCcC
Q 036516 629 IVKDGIGTTQVIQAFAETFDLFIVGKNHDPCCKATLGLSEW 669 (709)
Q Consensus 629 ~v~~g~~~~~~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w 669 (709)
..+|-+++.+++++. +.||++||. +.|+..|+.|.
T Consensus 47 ~~~d~~~l~~~a~~~--~idlvvvGP----E~pL~~Gl~D~ 81 (100)
T PF02844_consen 47 DITDPEELADFAKEN--KIDLVVVGP----EAPLVAGLADA 81 (100)
T ss_dssp -TT-HHHHHHHHHHT--TESEEEESS----HHHHHTTHHHH
T ss_pred CCCCHHHHHHHHHHc--CCCEEEECC----hHHHHHHHHHH
Confidence 456677788888865 899999996 57999999875
No 219
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=26.64 E-value=6e+02 Score=24.71 Aligned_cols=124 Identities=15% Similarity=0.231 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHH--HhchhHhHHHHHHHHhcCCCCChhhHHHhhhhh---
Q 036516 175 VIFLVRPLTMRIVSKNSEEESMNQNHFIITICIVLVTTILGT--LVGQNSILTAFFFGLCLPDGPPLGTQLVQKLDF--- 249 (709)
Q Consensus 175 ~~~v~r~~~~~i~~~~~~~~~~~e~~~~~vl~~~l~~~~~~~--~~G~~~~lGaf~~Gl~ip~~~~~~~~l~~kl~~--- 249 (709)
..++..|..-.+..|.|+. ...++..++..+......+ ..-...+++++++=++...+. .++.-...+..
T Consensus 40 ~ali~g~vyml~~~KV~K~----G~~~i~~~i~gl~~~~~G~~~~~~~~~iv~gliAElI~~~g~-y~~~~~~~iay~vf 114 (186)
T PF09605_consen 40 AALICGIVYMLMVAKVPKR----GAFLIMGIIMGLIFFLMGHGWPMLIVCIVGGLIAELILKKGG-YKSKKRNTIAYAVF 114 (186)
T ss_pred HHHHHHHHHHHHHHHcCch----HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCC-CCcHHHHHHHHHHH
Confidence 3344555556666676532 2222222222222222222 234456778888888886552 33322222211
Q ss_pred --hhHhhhhHHHHHHhhhcccc----------ccccch-hhHHHHHHHHHHHHHHHHHHHHhHhhhC
Q 036516 250 --FTSGFLLPVFCAISGIRMEL----------YLINEK-SFIKIEFIILMSYLGKFTGVMVPSLFFG 303 (709)
Q Consensus 250 --~~~~~flPlFF~~~G~~~d~----------~~l~~~-~~~~~~~ii~~~~~~K~~~~~l~~~~~~ 303 (709)
...+-++|++|..-...-+. ..+.+. +.+...++++..+++=++|+++..+..|
T Consensus 115 ~~~~~g~~~p~~~~~~~y~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~v~a~lG~~lG~kllk 181 (186)
T PF09605_consen 115 SLGYMGPYLPIWFMRDAYLAAMIAKGMGAEYADTMISFFTPWMLIIIIIITFVGALLGALLGKKLLK 181 (186)
T ss_pred HHHHHhhHHHHHHhHHHHHHHHHHcCCCHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11256788888654443110 111111 2233455666677777888888877665
No 220
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=26.08 E-value=6.6e+02 Score=25.01 Aligned_cols=108 Identities=10% Similarity=0.032 Sum_probs=51.1
Q ss_pred chhHHHHHHHHHHHhcCcceEEEEEEEEccCCChhH--HHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHH
Q 036516 446 SSTQLINAFTQFQRCYYGHVVVQHFTTIAPYATMHD--DVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNV 523 (709)
Q Consensus 446 ~~~~i~~af~~~~~~~~~~v~v~~~~~vs~~~~~~~--dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~V 523 (709)
....+.+.+++..+.. +..+. +..+ ..+..+ ...+.....++|-||+-..... . ......
T Consensus 13 ~~~~~~~gi~~~~~~~--g~~~~--~~~~-~~~~~~~~~~i~~l~~~~vdgiii~~~~~~---------~----~~~~~l 74 (269)
T cd06275 13 FFAEVVRGVEQYCYRQ--GYNLI--LCNT-EGDPERQRSYLRMLAQKRVDGLLVMCSEYD---------Q----PLLAML 74 (269)
T ss_pred hHHHHHHHHHHHHHHc--CCEEE--EEeC-CCChHHHHHHHHHHHHcCCCEEEEecCCCC---------h----HHHHHH
Confidence 4456666666665432 33332 2222 223332 3445566678887776421110 0 011222
Q ss_pred hhcCCccEEEEEecCCCCCCCcccCCCcceEEEEeeccCcChHHHHHH-HHHHhcCCCeEEEEE
Q 036516 524 LHKAPCSVGILVHRGQNKSNRPVYTGELLYHIVMLFIGGADDREALAY-SRRMAEHPNTSLTVV 586 (709)
Q Consensus 524 l~~apCsVgIlvdrg~~~~~~~~~~~~~~~~V~~~f~Gg~ddreAl~~-a~rma~~~~~~ltvl 586 (709)
.+....|| |+++|.... .. ..+. +.|++++-+. +..+.++..-++.++
T Consensus 75 ~~~~~ipv-V~i~~~~~~-~~------------~~~V-~~d~~~~~~~~~~~l~~~G~~~i~~i 123 (269)
T cd06275 75 ERYRHIPM-VVMDWGPED-DF------------ADKI-QDNSEEGGYLATRHLIELGHRRIGCI 123 (269)
T ss_pred HhcCCCCE-EEEecccCC-CC------------CCeE-eeCcHHHHHHHHHHHHHCCCceEEEE
Confidence 23457787 566875321 00 1223 4566666554 466666655565554
No 221
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=25.91 E-value=9e+02 Score=29.35 Aligned_cols=89 Identities=13% Similarity=0.144 Sum_probs=46.7
Q ss_pred EEcccccccccccCccCCCCcH---HH---HHHHH-HHHHHHHHHHHhhhcChHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 036516 4 LMGPSLLREIPYLDGLFPMGSR---YV---LRTFA-EFGMILHAFVLGVQIDLGLVKHIRKRAVIIGITSTLLPLVFGLS 76 (709)
Q Consensus 4 ilGPs~Lg~~~~~~~~fp~~~~---~~---l~~la-~iGli~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~ip~~~g~~ 76 (709)
++||..+|.. +|..+. .. ++.+. ++=+-++....|++.|+..+.+.+-. ..........-++.+.+
T Consensus 283 ~~Gaf~~Gl~------iP~~~p~g~~L~ekle~~~~~~llPl~~~~~G~k~di~~i~~~~~~-~~~i~~~~~~K~l~t~~ 355 (769)
T KOG1650|consen 283 IFGAFILGLA------IPHGPPLGSALIEKLEDLVSGLLLPLYFAISGLKTDISRINKWGAL-IRTILIFGAVKLLSTLG 355 (769)
T ss_pred cchhheEEEe------cCCCCchhHHHHHHHHHHHHHHHHHHHHHhhccceeHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 3567777765 554332 22 33332 22233566678999999999882222 22222233334444445
Q ss_pred HHHHHhhhccCCchhhHHHHHHHHHHhhch
Q 036516 77 SFRIVQRISHLDDETASSIAASVVVNSMTS 106 (709)
Q Consensus 77 ~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts 106 (709)
.+++. +.. +..++.+|..++.-.
T Consensus 356 ~sl~~-k~p------~~~~l~l~~lm~~kg 378 (769)
T KOG1650|consen 356 TSLYC-KLP------LRDSLALGLLMSTKG 378 (769)
T ss_pred HHHHh-cCc------hhHHHHHHHHHHhhh
Confidence 55422 221 466777777776544
No 222
>PF09877 DUF2104: Predicted membrane protein (DUF2104); InterPro: IPR019211 This entry is found in various hypothetical archaeal proteins, has no known function.
Probab=25.89 E-value=3.2e+02 Score=23.72 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=17.2
Q ss_pred hhHhHHHHHHHHhcCCCCChhh
Q 036516 220 QNSILTAFFFGLCLPDGPPLGT 241 (709)
Q Consensus 220 ~~~~lGaf~~Gl~ip~~~~~~~ 241 (709)
+...+|+|++|+.+...|..++
T Consensus 60 ~~~~ig~~li~~~~GmRPGYGr 81 (99)
T PF09877_consen 60 ILYTIGAFLIGFPLGMRPGYGR 81 (99)
T ss_pred HHHHHHHHHHhhhccCCCCCCe
Confidence 4567999999999988776663
No 223
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=25.69 E-value=2.4e+02 Score=30.57 Aligned_cols=70 Identities=13% Similarity=0.084 Sum_probs=54.9
Q ss_pred cceEEEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCC-ccEEEEEecCC
Q 036516 463 GHVVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAP-CSVGILVHRGQ 539 (709)
Q Consensus 463 ~~v~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~ap-CsVgIlvdrg~ 539 (709)
++..|-.|...+ -.+.+.|++.|++.++.+|+.-+.+.....| ...+....+...++++ .||++=-|.+.
T Consensus 16 ~~yaV~AfN~~n--~e~~~avi~AAEe~~sPvIlq~s~~~~~~~g-----~~~~~~~v~~~ae~~~~VPVaLHLDHg~ 86 (347)
T PRK13399 16 NGYGVPAFNVNN--MEQILAIMEAAEATDSPVILQASRGARKYAG-----DAMLRHMVLAAAEMYPDIPICLHQDHGN 86 (347)
T ss_pred CCceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEECCcchhhhCC-----HHHHHHHHHHHHHhcCCCcEEEECCCCC
Confidence 456677777777 5889999999999999999998876543222 1257888889999996 99999888875
No 224
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=25.32 E-value=2.6e+02 Score=29.41 Aligned_cols=111 Identities=12% Similarity=0.080 Sum_probs=70.0
Q ss_pred cceEEEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccC-CcceeccchhhHHHHHHHhhcC--CccEEEEEecCC
Q 036516 463 GHVVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGV-GGILESTDLSIRALNRNVLHKA--PCSVGILVHRGQ 539 (709)
Q Consensus 463 ~~v~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~-~g~~~~~~~~~~~~~~~Vl~~a--pCsVgIlvdrg~ 539 (709)
.+..|-.+...+ ..+.+.|++.|++.++.+||.-+.+.... .| -..+....+...+++ ..||.+=-|++.
T Consensus 16 ~~yAV~AfN~~n--~e~~~avi~AAee~~sPvIlq~~~~~~~~~~g-----~~~~~~~~~~~a~~~~~~VPV~lHLDHg~ 88 (288)
T TIGR00167 16 EGYAIPAFNINN--LETINAVLEAAAEEKSPVIIQFSNGAAKYIAG-----LGAISAMVKAMSEAYPYGVPVALHLDHGA 88 (288)
T ss_pred CCceEEEEEECC--HHHHHHHHHHHHHHCCCEEEECCcchhhccCC-----HHHHHHHHHHHHHhccCCCcEEEECCCCC
Confidence 345566777777 58889999999999999999877654332 22 124788888899999 899999888875
Q ss_pred CCCCCccc-CCCcceEEEEeeccCcChHHHHHHHHHHh---cCCCeE
Q 036516 540 NKSNRPVY-TGELLYHIVMLFIGGADDREALAYSRRMA---EHPNTS 582 (709)
Q Consensus 540 ~~~~~~~~-~~~~~~~V~~~f~Gg~ddreAl~~a~rma---~~~~~~ 582 (709)
.. ..... -.....+| |...-..+.+|-++..++.+ ...++.
T Consensus 89 ~~-e~i~~ai~~GftSV-MiDgS~lp~eeNi~~T~~vv~~Ah~~gv~ 133 (288)
T TIGR00167 89 SE-EDCAQAVKAGFSSV-MIDGSHEPFEENIELTKKVVERAHKMGVS 133 (288)
T ss_pred CH-HHHHHHHHcCCCEE-EecCCCCCHHHHHHHHHHHHHHHHHcCCE
Confidence 21 00000 00111234 44443456677777665553 444543
No 225
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.32 E-value=3.2e+02 Score=22.19 Aligned_cols=35 Identities=20% Similarity=0.314 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCchhHH
Q 036516 164 ITLVVIVYYIIVIFLVRPLTMRIVSKNSEEESMNQNHF 201 (709)
Q Consensus 164 ~~~~~i~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~ 201 (709)
.+++.++.++..+|+.|..+..-.+.+| |+.|-.+
T Consensus 10 ivl~ll~G~~~G~fiark~~~k~lk~NP---pine~~i 44 (71)
T COG3763 10 IVLALLAGLIGGFFIARKQMKKQLKDNP---PINEEMI 44 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCC---CCCHHHH
Confidence 3444444555667888888877777776 3455433
No 226
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=24.99 E-value=2.4e+02 Score=30.57 Aligned_cols=76 Identities=9% Similarity=0.025 Sum_probs=54.7
Q ss_pred cceEEEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccC-Ccc-eec--------cchhhHHHHHHHhhcCCccEE
Q 036516 463 GHVVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGV-GGI-LES--------TDLSIRALNRNVLHKAPCSVG 532 (709)
Q Consensus 463 ~~v~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~-~g~-~~~--------~~~~~~~~~~~Vl~~apCsVg 532 (709)
.+..|-.|.... -.+.+.|++.|++.+...||.-+.+.... .|. .+. ....+....+...+++++||+
T Consensus 19 ~~yAV~AfNv~n--~e~~~avi~AAee~~sPVIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~A~~~~VPVa 96 (350)
T PRK09197 19 NGFALPAVNVVG--TDSINAVLEGAAEAKSPVIIQFSNGGAAFIAGKGVKDDGQGAAVLGAIAGAKHVHEVAEHYGVPVI 96 (350)
T ss_pred CCceEEEEEeCC--HHHHHHHHHHHHHHCCCEEEEcChhhHhhcCCccccccchhhhhhhHHHHHHHHHHHHHHCCCCEE
Confidence 456677777777 58899999999999999999887654322 221 110 001256778889999999999
Q ss_pred EEEecCCC
Q 036516 533 ILVHRGQN 540 (709)
Q Consensus 533 Ilvdrg~~ 540 (709)
+=-|++..
T Consensus 97 lHLDHg~~ 104 (350)
T PRK09197 97 LHTDHCAK 104 (350)
T ss_pred EECCCCCC
Confidence 98888764
No 227
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=24.93 E-value=6.9e+02 Score=24.77 Aligned_cols=49 Identities=8% Similarity=-0.081 Sum_probs=26.6
Q ss_pred hchhHHHHHHHHHHHhcCcceEEEEEEEEccCCChh--HHHHHHHhhcCccEEEec
Q 036516 445 ASSTQLINAFTQFQRCYYGHVVVQHFTTIAPYATMH--DDVCTLALDKRVVIIIVP 498 (709)
Q Consensus 445 ~~~~~i~~af~~~~~~~~~~v~v~~~~~vs~~~~~~--~dI~~~A~e~~~dlII~g 498 (709)
....++.+.+++..+. .++.+.. ..+..+.. .+..+....+++|-+|+.
T Consensus 12 ~~~~~~~~~i~~~~~~--~g~~v~~---~~~~~~~~~~~~~~~~~~~~~~dgii~~ 62 (268)
T cd06323 12 PFFVTLKDGAQKEAKE--LGYELTV---LDAQNDAAKQLNDIEDLITRGVDAIIIN 62 (268)
T ss_pred HHHHHHHHHHHHHHHH--cCceEEe---cCCCCCHHHHHHHHHHHHHcCCCEEEEc
Confidence 4456667777666543 2344432 22222332 345555667789987775
No 228
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=24.69 E-value=2e+02 Score=31.05 Aligned_cols=70 Identities=14% Similarity=0.077 Sum_probs=55.1
Q ss_pred cceEEEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCC-ccEEEEEecCC
Q 036516 463 GHVVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAP-CSVGILVHRGQ 539 (709)
Q Consensus 463 ~~v~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~ap-CsVgIlvdrg~ 539 (709)
.+..|-.|...+ ..+.+.|++.|++.+..+|+.-+.+.-..-| ...+....+...++++ .||++=-|.+.
T Consensus 14 ~~yAV~AfN~~n--~e~~~aii~AAEe~~sPvIlq~s~~~~~~~g-----~~~~~~~~~~~ae~~~~VPValHLDHg~ 84 (347)
T TIGR01521 14 FGYGVPAFNVNN--MEQMRAIMEAADKTDSPVILQASRGARSYAG-----APFLRHLILAAIEEYPHIPVVMHQDHGN 84 (347)
T ss_pred cCceEEEEeeCC--HHHHHHHHHHHHHhCCCEEEECCcchhhhCC-----HHHHHHHHHHHHHhCCCCcEEEECCCCC
Confidence 456677777777 5889999999999999999998876533222 1257888889999997 99999888875
No 229
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=24.61 E-value=1.3e+03 Score=27.87 Aligned_cols=132 Identities=11% Similarity=0.195 Sum_probs=74.6
Q ss_pred cceeEEEecc-CC---ChHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCccccccCccccccchhchhHHHHHHHHHHH
Q 036516 384 SLRILVCIHK-EQ---NVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLKPHHQQTKSEAASSTQLINAFTQFQR 459 (709)
Q Consensus 384 e~riLv~v~~-~~---~~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~ 459 (709)
.-++||-... ++ ..+++++++.++..+|. .+|.. .+.+ + +.. +...+.++..+..+.+.+
T Consensus 683 RPQlLVll~~~~~~~vk~p~ll~~asqlKaGkG--ltIv~-s~l~--G-~~~----------e~~~~a~~a~~t~~~~m~ 746 (1075)
T KOG2082|consen 683 RPQLLVLLRLDEDIDVKHPRLLNFASQLKAGKG--LTIVG-SVLQ--G-TFL----------EDKGEAQRAEETIRTLME 746 (1075)
T ss_pred CceeeeeecccchhchhhhhHhhHHHHhhcCCC--eEEEE-Eeec--C-Cch----------hhhHHHHHHHHHHHHHHh
Confidence 4555554432 22 23678999988886554 44322 1111 1 111 112223333333333322
Q ss_pred hcCcceEEEEEEEEccCCChhHHHHHHHhhc-----CccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEE
Q 036516 460 CYYGHVVVQHFTTIAPYATMHDDVCTLALDK-----RVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGIL 534 (709)
Q Consensus 460 ~~~~~v~v~~~~~vs~~~~~~~dI~~~A~e~-----~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIl 534 (709)
. .++..-..+.++ .++.+.+..+.+.- +.+-++|+|...|+..... .......+.|...+.-.-+++
T Consensus 747 ~--~r~~Gf~q~vv~--~~ir~g~s~liQs~GlGglkpNtvl~~wP~~wr~e~~~----~~~~tFi~~v~~~~a~~~al~ 818 (1075)
T KOG2082|consen 747 A--ERVKGFAQTVVA--SNLREGISHLIQSCGLGGLKPNTVLMGWPEGWRQEEDP----REWKTFIETVRDTTAAHLALL 818 (1075)
T ss_pred H--HHhhhhhhhhcc--cchhhhhhhceeeccccCccCceEEEeCcchhcccccc----hHHHHHHHHHHHhhccceeEE
Confidence 1 223333334455 36878877776654 6789999999888654322 246777888888888888888
Q ss_pred EecCC
Q 036516 535 VHRGQ 539 (709)
Q Consensus 535 vdrg~ 539 (709)
|.++.
T Consensus 819 v~K~i 823 (1075)
T KOG2082|consen 819 VAKGI 823 (1075)
T ss_pred EecCc
Confidence 88876
No 230
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=24.48 E-value=2.5e+02 Score=29.82 Aligned_cols=70 Identities=11% Similarity=0.088 Sum_probs=54.3
Q ss_pred cceEEEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCC-ccEEEEEecCC
Q 036516 463 GHVVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAP-CSVGILVHRGQ 539 (709)
Q Consensus 463 ~~v~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~ap-CsVgIlvdrg~ 539 (709)
++..|-.|...+ -.+.+.|++.|++.+..+||.-+.+....-| ...+....+...++++ .||++=-|.+.
T Consensus 15 ~~yaV~AfN~~n--~e~~~avi~AAe~~~sPvIlq~s~~~~~~~g-----~~~~~~~~~~~a~~~~~VPValHLDHg~ 85 (307)
T PRK05835 15 EGYGVGAFNFVN--FEMLNAIFEAGNEENSPLFIQASEGAIKYMG-----IDMAVGMVKIMCERYPHIPVALHLDHGT 85 (307)
T ss_pred CCceEEEEEECC--HHHHHHHHHHHHHHCCCEEEEcCccHHhhCC-----hHHHHHHHHHHHHhcCCCeEEEECCCCC
Confidence 456677777777 5899999999999999999998765432222 1247778888889998 99999888875
No 231
>COG0395 UgpE ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]
Probab=24.30 E-value=8.1e+02 Score=25.64 Aligned_cols=75 Identities=16% Similarity=0.154 Sum_probs=45.5
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHhhchHHH------HHHHHHHhccccChh
Q 036516 51 LVKHIRKRAVIIGITSTLLPLVFGLSSFRIVQRISHLDDETASSIAASVVVNSMTSLVV------ITGLLKELKMLNSEL 124 (709)
Q Consensus 51 ~l~~~~~~~~~i~~~~~~ip~~~g~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~v------v~~iL~el~ll~s~~ 124 (709)
.+.+.-..++.+++.+.++..+++...+|.+.+...+ + .. .+..+.++..-+|. ...+++++|++||-.
T Consensus 70 ~f~~~~~NSliva~~~t~l~i~~~~laaYalar~~f~-g---~~-~~~~~~l~~lm~P~~v~~iPl~~~~~~lgl~nt~~ 144 (281)
T COG0395 70 GFLRYFLNSLIVAVGSTVLSLLLSSLAAYALARFRFK-G---RK-LLFLLLLLTLMLPAQVLLIPLYLLMRKLGLLNTYW 144 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-c---HH-HHHHHHHHHHHhhHHHHHHHHHHHHHHcCChhhHH
Confidence 3556667778889999999999999999998775321 1 12 12222222211222 234567899999877
Q ss_pred HHHHHH
Q 036516 125 GRLAAS 130 (709)
Q Consensus 125 G~lals 130 (709)
|-+...
T Consensus 145 glil~~ 150 (281)
T COG0395 145 GLILPY 150 (281)
T ss_pred HHHHHH
Confidence 644443
No 232
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=24.10 E-value=9.9e+02 Score=26.31 Aligned_cols=21 Identities=10% Similarity=0.243 Sum_probs=14.0
Q ss_pred HHHHHHhchhHhHHHHHHHHh
Q 036516 212 TILGTLVGQNSILTAFFFGLC 232 (709)
Q Consensus 212 ~~~~~~~G~~~~lGaf~~Gl~ 232 (709)
.+-...+++|+++-+++.+++
T Consensus 438 ~~~~ki~~fhpivP~l~vsi~ 458 (473)
T COG4145 438 FLGIKILGFHPIVPSLLVSII 458 (473)
T ss_pred HHhhHhheeccccHHHHHHHH
Confidence 344466788888777777664
No 233
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=23.97 E-value=1.5e+02 Score=33.22 Aligned_cols=54 Identities=15% Similarity=0.174 Sum_probs=33.5
Q ss_pred hHHHHHHHHHhhhcCCCcEEEEEEeec---ChhhHHHHHHhhhc--CCcEEEEecCCCC
Q 036516 605 ELDNQAFDEFKDSMVGNKIIFREEIVK---DGIGTTQVIQAFAE--TFDLFIVGKNHDP 658 (709)
Q Consensus 605 ~~d~~~l~~~~~~~~~~~v~y~e~~v~---~g~~~~~~i~~~~~--~~DLiiVG~~~~~ 658 (709)
....++++..+.+++.-.+.+-...|- ...++.++|+.++. ++|++||||++|.
T Consensus 141 aa~~D~~~~~~~r~p~~~~~~~~~~vQG~~a~~~i~~al~~~~~~~~~dviii~RGGGs 199 (432)
T TIGR00237 141 AALADILHILKRRDPSLKVVIYPTLVQGEGAVQSIVESIELANTKNECDVLIVGRGGGS 199 (432)
T ss_pred HHHHHHHHHHHhhCCCceEEEecccccCccHHHHHHHHHHHhhcCCCCCEEEEecCCCC
Confidence 345567777777665323433344442 13456677776652 4899999999985
No 234
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=23.63 E-value=3e+02 Score=29.75 Aligned_cols=76 Identities=13% Similarity=0.090 Sum_probs=54.1
Q ss_pred cceEEEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccC-Ccc-eec--------cchhhHHHHHHHhhcCCccEE
Q 036516 463 GHVVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGV-GGI-LES--------TDLSIRALNRNVLHKAPCSVG 532 (709)
Q Consensus 463 ~~v~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~-~g~-~~~--------~~~~~~~~~~~Vl~~apCsVg 532 (709)
.+..|-.+-..+ ..+.+.|++.|++.+...||.-+.+.... .+. ++. ....+....+...+++++||+
T Consensus 14 ~~yAV~AfN~~n--~e~~~avi~AAee~~sPvIiq~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~A~~~~VPVa 91 (345)
T cd00946 14 NGFAIPAVNCTS--SSTINAVLEAARDAKSPIIIQFSNGGAAFYAGKGLKNEKQKASIAGAIAAAHHVRSMAEHYGVPVV 91 (345)
T ss_pred CCceEEEEeeCC--HHHHHHHHHHHHHhCCCEEEECCccHHhhcCCccccccchhhhhhhHHHHHHHHHHHHHHCCCCEE
Confidence 345666666666 58899999999999999999987664221 111 010 011477888899999999999
Q ss_pred EEEecCCC
Q 036516 533 ILVHRGQN 540 (709)
Q Consensus 533 Ilvdrg~~ 540 (709)
+=-|.+..
T Consensus 92 lHLDHg~~ 99 (345)
T cd00946 92 LHTDHCAK 99 (345)
T ss_pred EECCCCCC
Confidence 98888764
No 235
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=23.54 E-value=2.7e+02 Score=28.12 Aligned_cols=50 Identities=4% Similarity=-0.115 Sum_probs=34.8
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHhhchH
Q 036516 50 GLVKHIRKRAVIIGITSTLLPLVFGLSSFRIVQRISHLDDETASSIAASVVVNSMTSL 107 (709)
Q Consensus 50 ~~l~~~~~~~~~i~~~~~~ip~~~g~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~ 107 (709)
++-++.-++...+-+..++.|.+++++++++++. +...+.+|+.+.....
T Consensus 18 ~~trk~dp~l~~~ml~a~l~~~~v~v~ig~l~~~--------~~~~~i~gi~~g~l~a 67 (224)
T PF13829_consen 18 KMTRKEDPKLPWLMLGAFLGPIAVFVLIGLLFGS--------WWYWLIIGILLGLLAA 67 (224)
T ss_pred HHHHHHCcchHHHHHHHHHHHHHHHHHHHHHHcc--------HHHHHHHHHHHHHHHH
Confidence 3456777777777788899999988888888763 2445666666655443
No 236
>COG1303 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.52 E-value=4.2e+02 Score=25.16 Aligned_cols=86 Identities=14% Similarity=0.160 Sum_probs=55.9
Q ss_pred CcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCCCCCCCCchhHHHHHHHHHhhhcCCCcEEEEEEeecChhhHHHHHH
Q 036516 562 GADDREALAYSRRMAEHPNTSLTVVWFITTDQNRPSTEMPDDHELDNQAFDEFKDSMVGNKIIFREEIVKDGIGTTQVIQ 641 (709)
Q Consensus 562 g~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~v~y~e~~v~~g~~~~~~i~ 641 (709)
|.+|....+-.....++.+..-++.. ..+| + ..+++|+. . ..+..-...=.+-.|+..-|+
T Consensus 39 ~e~De~v~esv~dVv~rwGG~F~v~~-----------~~nw-~----~~i~~wk~--g-G~vvHLTMYG~~i~dv~~ei~ 99 (179)
T COG1303 39 GEEDEKVVESVEDVVERWGGPFFVKF-----------GVNW-R----KVIREWKE--G-GIVVHLTMYGLNIDDVIDEIR 99 (179)
T ss_pred CcccHHHHHHHHHHHHhcCCCEEEEE-----------cccH-H----HHHHHhhc--C-CEEEEEEecCCcchhhhHHHH
Confidence 67788888888889999888866665 2234 2 35677775 2 223232322233355677777
Q ss_pred hhhcCCc-EEEEecCCCCCcccccccCcCC
Q 036516 642 AFAETFD-LFIVGKNHDPCCKATLGLSEWI 670 (709)
Q Consensus 642 ~~~~~~D-LiiVG~~~~~~~~~~~gl~~w~ 670 (709)
+. ..| |++||... -++-...|.||+
T Consensus 100 ~~--~k~~lvvVGaeK--Vp~evYelADyN 125 (179)
T COG1303 100 ES--KKDVLVVVGAEK--VPGEVYELADYN 125 (179)
T ss_pred hc--CCcEEEEEcccc--CCHHHhhhcccc
Confidence 65 566 99999865 356678888994
No 237
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=23.38 E-value=2.2e+02 Score=29.84 Aligned_cols=70 Identities=14% Similarity=0.097 Sum_probs=53.4
Q ss_pred cceEEEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEEEecCC
Q 036516 463 GHVVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGILVHRGQ 539 (709)
Q Consensus 463 ~~v~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIlvdrg~ 539 (709)
.+..|-.|...+ -.+.+.|++.|++.++.+||.-..+.-...| ...+....+...+++..||++=-|++.
T Consensus 16 ~~yaV~AfN~~n--~e~~~avi~AAe~~~sPvIl~~~~~~~~~~g-----~~~~~~~~~~~A~~~~vPV~lHLDH~~ 85 (283)
T PRK07998 16 KHVLAGAFNTTN--LETTISILNAIERSGLPNFIQIAPTNAQLSG-----YDYIYEIVKRHADKMDVPVSLHLDHGK 85 (283)
T ss_pred CCCEEEEEeeCC--HHHHHHHHHHHHHhCCCEEEECcHhHHhhCC-----HHHHHHHHHHHHHHCCCCEEEECcCCC
Confidence 345666666666 4788999999999999999998655432222 124788888999999999999888875
No 238
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=23.17 E-value=2.1e+02 Score=25.05 Aligned_cols=38 Identities=16% Similarity=0.048 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHh
Q 036516 66 STLLPLVFGLSSFRIVQRISHLDDETASSIAASVVVNS 103 (709)
Q Consensus 66 ~~~ip~~~g~~~~~~l~~~~~~~~~~~~~~l~l~~~ls 103 (709)
++++|.++|..++.++...++.+..-....+++|++.+
T Consensus 51 ~~v~pil~G~~lG~WLD~~~~t~~~~tl~~lllGv~~G 88 (100)
T TIGR02230 51 SVAIPTLLGVAVGIWLDRHYPSPFSWTLTMLIVGVVIG 88 (100)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHH
Confidence 45688888888888887766422211223444444443
No 239
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=23.08 E-value=9e+02 Score=26.99 Aligned_cols=27 Identities=22% Similarity=0.404 Sum_probs=22.4
Q ss_pred HHhhhhhhhHhhhhHHHHHHhhhcccc
Q 036516 243 LVQKLDFFTSGFLLPVFCAISGIRMEL 269 (709)
Q Consensus 243 l~~kl~~~~~~~flPlFF~~~G~~~d~ 269 (709)
+...++..+++.+|.+||..+|+++.-
T Consensus 58 ~~~~l~~wiNDgLMaiFFf~vGLEiKr 84 (423)
T PRK14853 58 LSLSLGTWAADGLLAIFFFVVGLELKR 84 (423)
T ss_pred CCCCHHHHHHHhhHHHHHHHHHHHHhH
Confidence 344567788999999999999999964
No 240
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=23.06 E-value=4.7e+02 Score=25.03 Aligned_cols=96 Identities=13% Similarity=0.073 Sum_probs=49.0
Q ss_pred eeEEEeccCCChHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCccccccCccccccchhchhHHHHHHHHHHHhcCcce
Q 036516 386 RILVCIHKEQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLKPHHQQTKSEAASSTQLINAFTQFQRCYYGHV 465 (709)
Q Consensus 386 riLv~v~~~~~~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~~v 465 (709)
||+|+++.-.+.-.|+.++.... +..+..+.++|+-.-... .++.-.+..+++.+. .++
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~--~~~~~~~~~~~vdh~~~~-----------------~s~~~~~~v~~~~~~--~~i 59 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELR--RRNGIKLIAVHVDHGLRE-----------------ESDEEAEFVEEICEQ--LGI 59 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHH--TTTTTEEEEEEEE-STSC-----------------CHHHHHHHHHHHHHH--TT-
T ss_pred CEEEEEcCCHHHHHHHHHHHHHH--HhcCCCeEEEEEecCCCc-----------------ccchhHHHHHHHHHh--cCC
Confidence 68899998888888999988887 444568888887642211 111112233334332 234
Q ss_pred EEEEEEEEc---cCCCh--------hHHHHHHHhhcCccEEEecCCcc
Q 036516 466 VVQHFTTIA---PYATM--------HDDVCTLALDKRVVIIIVPFHKQ 502 (709)
Q Consensus 466 ~v~~~~~vs---~~~~~--------~~dI~~~A~e~~~dlII~g~h~~ 502 (709)
+......-. +..+. ++-+.+.|++++++.|++|-|..
T Consensus 60 ~~~~~~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~i~~GHh~d 107 (182)
T PF01171_consen 60 PLYIVRIDEDRKKGSNIEECARELRYQFLREIAKEEGCNKIALGHHLD 107 (182)
T ss_dssp EEEEEE--CHCCTTSTCHHHHHHHHHHHHHHHHHTTT-CEEE---BHH
T ss_pred ceEEEEeeeeecccCCHHHHHHHHHHHHHHHhhhcccccceeecCcCC
Confidence 444322211 12222 23444678889999999997754
No 241
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=23.01 E-value=7.4e+02 Score=24.46 Aligned_cols=105 Identities=11% Similarity=0.090 Sum_probs=51.3
Q ss_pred hhHHHHHHHHHHHhcCcceEEEEEEEEccCCCh--hHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHh
Q 036516 447 STQLINAFTQFQRCYYGHVVVQHFTTIAPYATM--HDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVL 524 (709)
Q Consensus 447 ~~~i~~af~~~~~~~~~~v~v~~~~~vs~~~~~--~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl 524 (709)
..++.+.+++..+. .+..+... .+..+. ..+..+....+++|-+|+-.... + .. ..+.+
T Consensus 14 ~~~~~~gi~~~~~~--~g~~~~~~---~~~~~~~~~~~~i~~l~~~~~dgii~~~~~~---~----------~~-~~~~~ 74 (259)
T cd01542 14 TSRTVKGILAALYE--NGYQMLLM---NTNFSIEKEIEALELLARQKVDGIILLATTI---T----------DE-HREAI 74 (259)
T ss_pred HHHHHHHHHHHHHH--CCCEEEEE---eCCCCHHHHHHHHHHHHhcCCCEEEEeCCCC---C----------HH-HHHHH
Confidence 35666666665443 23444322 111222 22344445578899888753210 0 11 22334
Q ss_pred hcCCccEEEEEecCCCCCCCcccCCCcceEEEEeeccCcChHHH-HHHHHHHhcCCCeEEEEEE
Q 036516 525 HKAPCSVGILVHRGQNKSNRPVYTGELLYHIVMLFIGGADDREA-LAYSRRMAEHPNTSLTVVW 587 (709)
Q Consensus 525 ~~apCsVgIlvdrg~~~~~~~~~~~~~~~~V~~~f~Gg~ddreA-l~~a~rma~~~~~~ltvl~ 587 (709)
+++..|| |++++.... +.++ +.|+.++ -..+.+|.++..-++-++.
T Consensus 75 ~~~~ipv-v~~~~~~~~---------------~~~v-~~d~~~~~~~~~~~l~~~g~~~i~~v~ 121 (259)
T cd01542 75 KKLNVPV-VVVGQDYPG---------------ISSV-VYDDYGAGYELGEYLAQQGHKNIAYLG 121 (259)
T ss_pred hcCCCCE-EEEeccCCC---------------CCEE-EECcHHHHHHHHHHHHHcCCCcEEEEc
Confidence 5667887 445653211 1233 3444444 4567777776665655543
No 242
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=22.88 E-value=7.6e+02 Score=24.56 Aligned_cols=110 Identities=8% Similarity=0.033 Sum_probs=54.1
Q ss_pred hchhHHHHHHHHHHHhcCcceEEEEEEEEccCCChhHHHHHHHhhcCccEEEe-cCCccccCCcceeccchhhHHHHHHH
Q 036516 445 ASSTQLINAFTQFQRCYYGHVVVQHFTTIAPYATMHDDVCTLALDKRVVIIIV-PFHKQWGVGGILESTDLSIRALNRNV 523 (709)
Q Consensus 445 ~~~~~i~~af~~~~~~~~~~v~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~-g~h~~~~~~g~~~~~~~~~~~~~~~V 523 (709)
....++.+.+++..++. +..+.....-.. ..-..+.++...++++|-||+ |.... ....++
T Consensus 12 ~~~~~~~~gi~~~~~~~--g~~~~~~~~~~~-~~~~~~~i~~l~~~~~dgiii~~~~~~--------------~~~~~~- 73 (270)
T cd06296 12 PWASEVLRGVEEAAAAA--GYDVVLSESGRR-TSPERQWVERLSARRTDGVILVTPELT--------------SAQRAA- 73 (270)
T ss_pred ccHHHHHHHHHHHHHHc--CCeEEEecCCCc-hHHHHHHHHHHHHcCCCEEEEecCCCC--------------hHHHHH-
Confidence 44566777777766542 344433211111 112335566667788996665 43110 011233
Q ss_pred hhcCCccEEEEEecCCCCCCCcccCCCcceEEEEeeccCcChHHHHHH-HHHHhcCCCeEEEEE
Q 036516 524 LHKAPCSVGILVHRGQNKSNRPVYTGELLYHIVMLFIGGADDREALAY-SRRMAEHPNTSLTVV 586 (709)
Q Consensus 524 l~~apCsVgIlvdrg~~~~~~~~~~~~~~~~V~~~f~Gg~ddreAl~~-a~rma~~~~~~ltvl 586 (709)
+++..-|| |++||...... .++++ +.|++++-.. ++++.++..-++.++
T Consensus 74 ~~~~~ipv-V~i~~~~~~~~------------~~~~v-~~d~~~~~~~a~~~l~~~g~~~i~~i 123 (270)
T cd06296 74 LRRTGIPF-VVVDPAGDPDA------------DVPSV-GATNWAGGLAATEHLLELGHRRIGFI 123 (270)
T ss_pred HhcCCCCE-EEEecccCCCC------------CCCEE-EeCcHHHHHHHHHHHHHcCCCcEEEE
Confidence 45567787 55687532100 13445 5666666554 455555544454444
No 243
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=22.29 E-value=8.6e+02 Score=25.12 Aligned_cols=98 Identities=15% Similarity=0.057 Sum_probs=57.6
Q ss_pred cceeEEEeccCCChHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCccccccCccccccchhchhHHHHHHHHHHHhcCc
Q 036516 384 SLRILVCIHKEQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLKPHHQQTKSEAASSTQLINAFTQFQRCYYG 463 (709)
Q Consensus 384 e~riLv~v~~~~~~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~ 463 (709)
..+|+|+++.-.+...++.++..+... ..+.++|+-.--.. .++.-.+..+.+.+...-
T Consensus 21 ~~~ilVavSGGkDS~~ll~~L~~l~~~----~~~~a~~Vd~~~~~-----------------~~~~~~~~~~~~~~~~~~ 79 (298)
T COG0037 21 EYKILVAVSGGKDSLALLHLLKELGRR----IEVEAVHVDHGLRG-----------------YSDQEAELVEKLCEKLGI 79 (298)
T ss_pred CCeEEEEeCCChHHHHHHHHHHHhccC----ceEEEEEecCCCCC-----------------ccchHHHHHHHHHHHhCC
Confidence 369999999999999999999888732 67778887642211 111222233334332222
Q ss_pred ceEEEEEEEEccCCC----hhHH---------HHHHHhhcCccEEEecCCcc
Q 036516 464 HVVVQHFTTIAPYAT----MHDD---------VCTLALDKRVVIIIVPFHKQ 502 (709)
Q Consensus 464 ~v~v~~~~~vs~~~~----~~~d---------I~~~A~e~~~dlII~g~h~~ 502 (709)
...+..++..-.... .... ..+.|++.++|.|+.|.|..
T Consensus 80 ~~~v~~~~~~~~~~~~~~~~~c~~c~~~R~~~l~~~a~~~g~~~i~tgH~~d 131 (298)
T COG0037 80 PLIVERVTDDLGRETLDGKSICAACRRLRRGLLYKIAKELGADKIATGHHLD 131 (298)
T ss_pred ceEEEEEEeeccccccCCCChhHHHHHHHHHHHHHHHHHcCCCeEEeccCcH
Confidence 233333333332221 1223 44567788999999998765
No 244
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=22.23 E-value=9.8e+02 Score=25.59 Aligned_cols=67 Identities=4% Similarity=-0.057 Sum_probs=35.8
Q ss_pred Hhhhccccccccch--hhHHHHHHHHHHHHHHHHHHHHhHhh-hCCCHHHHHHHHHH---hhhhhhHHHHHHHhh
Q 036516 262 ISGIRMELYLINEK--SFIKIEFIILMSYLGKFTGVMVPSLF-FGMSFLKASCLALI---MCCRGIAEIAVYCMW 330 (709)
Q Consensus 262 ~~G~~~d~~~l~~~--~~~~~~~ii~~~~~~K~~~~~l~~~~-~~~~~~~~~~lg~~---m~~kG~~~l~~~~~~ 330 (709)
..|++++++++... .+....+..+.-++...+.++..++. ++.+.. +.+|++ .+|-|..+.+...++
T Consensus 55 ~mgl~L~~~df~~~~~~pk~~~~~~~~qfvi~Plla~~l~~l~~~~~p~--l~~GliLv~~~Pgg~~S~v~T~lA 127 (328)
T TIGR00832 55 PPLAKVDYSALGDVFKDPKGLILSLFINWIIGPFLMFLLAWLFLRDLFE--YIAGLILLGLARCIAMVFVWNQLA 127 (328)
T ss_pred HhhhcCCHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH--HHHHHHHHHhcchHHHHHHHHHHc
Confidence 34466666655432 34444455555566667777777765 365543 455543 345555555544443
No 245
>KOG4050 consensus Glutamate transporter EAAC1-interacting protein GTRAP3-18 [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=22.05 E-value=4.8e+02 Score=24.80 Aligned_cols=12 Identities=17% Similarity=0.373 Sum_probs=7.5
Q ss_pred hhhHHHhhhhhh
Q 036516 239 LGTQLVQKLDFF 250 (709)
Q Consensus 239 ~~~~l~~kl~~~ 250 (709)
+..++++|+|.+
T Consensus 155 ikNkleN~iEsi 166 (188)
T KOG4050|consen 155 IKNKLENKIESI 166 (188)
T ss_pred HHHHHHHHHhhc
Confidence 345667777765
No 246
>COG3748 Predicted membrane protein [Function unknown]
Probab=21.77 E-value=7.4e+02 Score=26.46 Aligned_cols=41 Identities=20% Similarity=0.266 Sum_probs=25.0
Q ss_pred hHhhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHH
Q 036516 251 TSGFLLPVFCAISGIRMELYLINEKSFIKIEFIILMSYLGK 291 (709)
Q Consensus 251 ~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~ii~~~~~~K 291 (709)
.+.+-+|..|...-=+..+..=...+|.+..++.+.++..|
T Consensus 225 NnylTLPVlF~MlSNHyp~~~gt~fnWii~alv~l~gV~IR 265 (407)
T COG3748 225 NNYLTLPVLFTMLSNHYPLAFGTQFNWIIAALVFLMGVLIR 265 (407)
T ss_pred cceehHHHHHHHHhccCcccccCchhHHHHHHHHHHHHHHH
Confidence 35677999999876665543322336776655555555443
No 247
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=21.59 E-value=4.1e+02 Score=27.28 Aligned_cols=38 Identities=18% Similarity=0.224 Sum_probs=29.9
Q ss_pred eEEEEeeccCcChHHHHHHHHHHhcCC--CeEEEEEEeee
Q 036516 553 YHIVMLFIGGADDREALAYSRRMAEHP--NTSLTVVWFIT 590 (709)
Q Consensus 553 ~~V~~~f~Gg~ddreAl~~a~rma~~~--~~~ltvl~v~~ 590 (709)
.+|++.+.||.|+--.|.++.++.+.. +.++..+++..
T Consensus 30 ~kilVa~SGG~DS~~LL~ll~~l~~~~~~~~~l~av~vd~ 69 (258)
T PRK10696 30 DRVMVCLSGGKDSYTLLDILLNLQKRAPINFELVAVNLDQ 69 (258)
T ss_pred CEEEEEecCCHHHHHHHHHHHHHHHhCCCCeEEEEEEecC
Confidence 369999999999988888888887653 45777777654
No 248
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=21.51 E-value=91 Score=33.05 Aligned_cols=68 Identities=18% Similarity=0.236 Sum_probs=42.8
Q ss_pred HHHHHHHHHhhhcCCCcEEEEEEeecChhhHHHHHHhhh-cCCcEEEEecCCCCCcccccccCcCCCCCccchh
Q 036516 606 LDNQAFDEFKDSMVGNKIIFREEIVKDGIGTTQVIQAFA-ETFDLFIVGKNHDPCCKATLGLSEWIEYPELGIL 678 (709)
Q Consensus 606 ~d~~~l~~~~~~~~~~~v~y~e~~v~~g~~~~~~i~~~~-~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~i 678 (709)
.-++..+.+++.. +.+.+...+...|..+.++++. ++||+++++-+-|--+....||.+=...| ||+|
T Consensus 21 ~~~~~~~~l~~~g----~~~~~~~t~~~g~a~~~a~~a~~~~~D~via~GGDGTv~evingl~~~~~~~-Lgil 89 (301)
T COG1597 21 LLREVEELLEEAG----HELSVRVTEEAGDAIEIAREAAVEGYDTVIAAGGDGTVNEVANGLAGTDDPP-LGIL 89 (301)
T ss_pred HHHHHHHHHHhcC----CeEEEEEeecCccHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHhcCCCCc-eEEe
Confidence 3334444444432 2334444444456777777765 46999999988877677788887665555 7765
No 249
>PF02355 SecD_SecF: Protein export membrane protein; InterPro: IPR022813 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains []. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The SecD and SecF equivalents of the Gram-positive bacterium Bacillus subtilis are jointly present in one polypeptide, denoted SecDF, that is required to maintain a high capacity for protein secretion. Unlike the SecD subunit of the pre-protein translocase of E. coli, SecDF of B. subtilis was not required for the release of a mature secretory protein from the membrane, indicating that SecDF is involved in earlier translocation steps []. Comparison with SecD and SecF proteins from other organisms revealed the presence of 10 conserved regions in SecDF, some of which appear to be important for SecDF function. Interestingly, the SecDF protein of B. subtilis has 12 putative transmembrane domains. Thus, SecDF does not only show sequence similarity but also structural similarity to secondary solute transporters []. This entry represents bacterial SecD and SecF protein export membrane proteins and their archaeal homologues []. It is found in association with PF07549 from PFAM SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC []. SecD and SecF are required to maintain a proton motive force []. ; PDB: 3AQP_A 2RRN_A 3AQO_B.
Probab=21.35 E-value=7.7e+02 Score=24.06 Aligned_cols=17 Identities=35% Similarity=0.626 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHhh
Q 036516 173 IIVIFLVRPLTMRIVSK 189 (709)
Q Consensus 173 ~~~~~v~r~~~~~i~~~ 189 (709)
.-.+++.+|+..|+.++
T Consensus 173 ~ss~~ia~~l~~~l~~~ 189 (189)
T PF02355_consen 173 YSSLFIARPLLYWLVKK 189 (189)
T ss_dssp HHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHhhC
Confidence 34567888988887654
No 250
>COG0679 Predicted permeases [General function prediction only]
Probab=21.19 E-value=9.9e+02 Score=25.23 Aligned_cols=134 Identities=12% Similarity=0.135 Sum_probs=76.2
Q ss_pred hhHhHHHHHHHHhcCC-CCChhhHHHhhhhhhhHhhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHh
Q 036516 220 QNSILTAFFFGLCLPD-GPPLGTQLVQKLDFFTSGFLLPVFCAISGIRMELYLINEKSFIKIEFIILMSYLGKFTGVMVP 298 (709)
Q Consensus 220 ~~~~lGaf~~Gl~ip~-~~~~~~~l~~kl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~ii~~~~~~K~~~~~l~ 298 (709)
.+|.+=|+++|+++.. +-++...+.+-++.+ .+--.|+=.+..|+.++..................-.+...+..++.
T Consensus 167 ~nP~i~a~i~g~~~~~~~i~lP~~~~~~~~~l-~~a~~pl~li~lG~~L~~~~~~~~~~~~~~~~~~~kll~~Pl~~~~~ 245 (311)
T COG0679 167 TNPLIIALILGLLLNLLGISLPAPLDTAVDLL-ASAASPLALIALGLSLAFLKLKGSKPPIILIALSLKLLLAPLVALLV 245 (311)
T ss_pred hCcHHHHHHHHHHHHHcCCCCcHHHHHHHHHH-HHhhhhHHHHHHhhhcchhhhccccchhHHHHHHHHHHHHHHHHHHH
Confidence 3566667777777663 223334555555555 78899999999999999854443333322222222355666777778
Q ss_pred HhhhCCCHHHHHHHHHH--hhhhhhHHHHHHHhhhccCccchhHHHHHHHHHHHHHHHHHHHH
Q 036516 299 SLFFGMSFLKASCLALI--MCCRGIAEIAVYCMWKDRKIITNQIFAIMITNMVIITGISTTIV 359 (709)
Q Consensus 299 ~~~~~~~~~~~~~lg~~--m~~kG~~~l~~~~~~~~~~~i~~~~~~~lv~~~ll~t~i~~plv 359 (709)
++.++++.-+. ....+ ..|-+....+++.. .+.-.+..-+.+.++.++ +.++-|.+
T Consensus 246 ~~~~~l~~~~~-~v~vl~~a~P~A~~~~v~a~~---~~~~~~laa~~i~ist~l-s~~t~p~~ 303 (311)
T COG0679 246 AKLLGLSGLAL-QVLVLLSAMPTAVNAYVLARQ---YGGDPRLAASTILLSTLL-SLLTLPLL 303 (311)
T ss_pred HHHcCCChHHH-HHHHHHhhCcHHhHHHHHHHH---hCCChHHHHHHHHHHHHH-HHHHHHHH
Confidence 88888776554 22222 34556555544433 444344444555555555 44444443
No 251
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=21.16 E-value=1.1e+03 Score=25.81 Aligned_cols=130 Identities=12% Similarity=0.029 Sum_probs=64.6
Q ss_pred cceeccchhhHHHHHHHhhcCC--ccEEEEEecCCCCCCCcccCCCcceEEEEeeccCcChHHHHHHHHHHhcCCCeEEE
Q 036516 507 GILESTDLSIRALNRNVLHKAP--CSVGILVHRGQNKSNRPVYTGELLYHIVMLFIGGADDREALAYSRRMAEHPNTSLT 584 (709)
Q Consensus 507 g~~~~~~~~~~~~~~~Vl~~ap--CsVgIlvdrg~~~~~~~~~~~~~~~~V~~~f~Gg~ddreAl~~a~rma~~~~~~lt 584 (709)
|.++..-+....+.+.|-+..+ .+|++ |-... . ...-.||.+..|++++++.+.+. +.
T Consensus 194 GslenR~Rf~~eii~aIr~~vg~~~~v~v---Rls~~--~-----------~~~~~g~~~~~e~~~~~~~l~~~----~D 253 (370)
T cd02929 194 GSLENRARFWRETLEDTKDAVGDDCAVAT---RFSVD--E-----------LIGPGGIESEGEGVEFVEMLDEL----PD 253 (370)
T ss_pred CChHhhhHHHHHHHHHHHHHcCCCceEEE---EecHH--H-----------hcCCCCCCCHHHHHHHHHHHHhh----CC
Confidence 4455555678889999888764 45554 31110 0 01112345678899999999764 23
Q ss_pred EEEeeecC-CCCCCCCCCCchhHHHHHHHHHhhhcCCCcEEEEEEeecChhhHHHHHHhhhcCCcEEEEecCCCCCc
Q 036516 585 VVWFITTD-QNRPSTEMPDDHELDNQAFDEFKDSMVGNKIIFREEIVKDGIGTTQVIQAFAETFDLFIVGKNHDPCC 660 (709)
Q Consensus 585 vl~v~~~~-~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~v~y~e~~v~~g~~~~~~i~~~~~~~DLiiVG~~~~~~~ 660 (709)
++++-... ..........+.....++.+++|+.. +..++.. -.+.+-++..+.+++ ..+|++.+||.-=.++
T Consensus 254 ~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~ik~~~-~~pvi~~-G~i~~~~~~~~~l~~--g~~D~V~~gR~~ladP 326 (370)
T cd02929 254 LWDVNVGDWANDGEDSRFYPEGHQEPYIKFVKQVT-SKPVVGV-GRFTSPDKMVEVVKS--GILDLIGAARPSIADP 326 (370)
T ss_pred EEEecCCCccccccccccCCccccHHHHHHHHHHC-CCCEEEe-CCCCCHHHHHHHHHc--CCCCeeeechHhhhCc
Confidence 44432210 00000001111111234555566532 1234332 223334445555553 3699999999865444
No 252
>PRK14561 hypothetical protein; Provisional
Probab=21.11 E-value=2e+02 Score=28.28 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=18.1
Q ss_pred EEEEeeccCcChHHHHHHHHHH
Q 036516 554 HIVMLFIGGADDREALAYSRRM 575 (709)
Q Consensus 554 ~V~~~f~Gg~ddreAl~~a~rm 575 (709)
+|++.+.||.|+--.+..+.+.
T Consensus 2 kV~ValSGG~DSslll~~l~~~ 23 (194)
T PRK14561 2 KAGVLFSGGKDSSLAAILLERF 23 (194)
T ss_pred EEEEEEechHHHHHHHHHHHhc
Confidence 5899999999998888777554
No 253
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=20.75 E-value=2.9e+02 Score=29.80 Aligned_cols=75 Identities=9% Similarity=0.019 Sum_probs=54.0
Q ss_pred cceEEEEEEEEccCCChhHHHHHHHhhcCccEEEecCC-ccccCCc-ceecc---------chhhHHHHHHHhhcCCccE
Q 036516 463 GHVVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFH-KQWGVGG-ILEST---------DLSIRALNRNVLHKAPCSV 531 (709)
Q Consensus 463 ~~v~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h-~~~~~~g-~~~~~---------~~~~~~~~~~Vl~~apCsV 531 (709)
.+..|-.+...+ ..+.+.+++.|++.+++.||.-+. +.....| ...++ -..+....+...+++.+||
T Consensus 11 ~~yAV~AfN~~n--~e~~~Avi~aAee~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~VPV 88 (340)
T cd00453 11 NNFALPAVNCVG--TDSINAVLETAAKVKAPVIVQFSNGGASFIAGKGVKSDVPQGAAILGAISGAHHVHQMAEHYGVPV 88 (340)
T ss_pred CCceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEcCcchHHHhCCCcccccccchhhhhhHHHHHHHHHHHHHHCCCCE
Confidence 455666666666 578899999999999999999877 3322112 11111 2357888889999999999
Q ss_pred EEEEecCC
Q 036516 532 GILVHRGQ 539 (709)
Q Consensus 532 gIlvdrg~ 539 (709)
++=-|.+.
T Consensus 89 ~lHLDH~~ 96 (340)
T cd00453 89 ILHTDHCA 96 (340)
T ss_pred EEEcCCCC
Confidence 99888875
No 254
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=20.64 E-value=6.2e+02 Score=24.19 Aligned_cols=95 Identities=17% Similarity=0.150 Sum_probs=53.8
Q ss_pred eeEEEeccCCChHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCccccccCccccccchhchhHHHHHHHHHHHhcCcce
Q 036516 386 RILVCIHKEQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLKPHHQQTKSEAASSTQLINAFTQFQRCYYGHV 465 (709)
Q Consensus 386 riLv~v~~~~~~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~~v 465 (709)
||+|+++.-.+...++.++....+. .+..+.++|+-.-. . ..+++-.+..+++.+. .++
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~--~~~~v~~v~vd~g~------------~-----~~~~~~~~~~~~~~~~--~gi 59 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPK--LKIRLIAAHVDHGL------------R-----PESDEEAEFVQQFCKK--LNI 59 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHH--cCCCEEEEEeCCCC------------C-----hhHHHHHHHHHHHHHH--cCC
Confidence 6889999888888899888765422 23456666653211 0 0112223344445432 234
Q ss_pred EEEEEEEEccC-------CChh--------HHHHHHHhhcCccEEEecCCcc
Q 036516 466 VVQHFTTIAPY-------ATMH--------DDVCTLALDKRVVIIIVPFHKQ 502 (709)
Q Consensus 466 ~v~~~~~vs~~-------~~~~--------~dI~~~A~e~~~dlII~g~h~~ 502 (709)
+.+.+. +.+. .++. +.+.+.|++++++.|+.|.|..
T Consensus 60 ~~~~~~-~~~~~~~~~~~~~~~~~~r~~R~~~l~~~a~~~g~~~i~~Gh~~~ 110 (189)
T TIGR02432 60 PLEIKK-VDVKALAKGKKKNLEEAAREARYDFFEEIAKKHGADYILTAHHAD 110 (189)
T ss_pred CEEEEE-ecchhhccccCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCccH
Confidence 433222 1110 1122 4667788999999999998754
No 255
>PRK10263 DNA translocase FtsK; Provisional
Probab=20.58 E-value=7.1e+02 Score=32.00 Aligned_cols=9 Identities=33% Similarity=0.553 Sum_probs=5.7
Q ss_pred ChHHHHHHH
Q 036516 564 DDREALAYS 572 (709)
Q Consensus 564 ddreAl~~a 572 (709)
--||...|.
T Consensus 616 trre~as~g 624 (1355)
T PRK10263 616 TRRELASYG 624 (1355)
T ss_pred cHHHHHhhc
Confidence 347777774
No 256
>PRK12933 secD preprotein translocase subunit SecD; Reviewed
Probab=20.48 E-value=1.4e+03 Score=26.78 Aligned_cols=14 Identities=7% Similarity=0.356 Sum_probs=7.8
Q ss_pred hHHHHHH--HHhcCCC
Q 036516 223 ILTAFFF--GLCLPDG 236 (709)
Q Consensus 223 ~lGaf~~--Gl~ip~~ 236 (709)
-++++++ |+++-+.
T Consensus 495 gIAGiILtIGmaVDan 510 (604)
T PRK12933 495 GIAGLVLTVGMAVDTN 510 (604)
T ss_pred HHHHHHHHHHhhccCc
Confidence 4555555 6666653
No 257
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=20.39 E-value=3.2e+02 Score=27.84 Aligned_cols=59 Identities=19% Similarity=0.220 Sum_probs=42.5
Q ss_pred EEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEEE
Q 036516 468 QHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGILV 535 (709)
Q Consensus 468 ~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIlv 535 (709)
..++.++|.+...++..+.+.+.++|.|++|-. +|. +......+.+.+=+ .+-||.++.
T Consensus 9 ~h~~liDP~k~~~~~~~~~~~~~gtdai~vGGS-----~~v---t~~~~~~~v~~ik~-~~lPvilfp 67 (232)
T PRK04169 9 LHVTLLDPDKPLPDEALEAICESGTDAIIVGGS-----DGV---TEENVDELVKAIKE-YDLPVILFP 67 (232)
T ss_pred eEEEEECCCCCCCHHHHHHHHhcCCCEEEEcCC-----Ccc---chHHHHHHHHHHhc-CCCCEEEeC
Confidence 466789999988888888899999999999932 222 12235566666554 888987664
No 258
>COG1380 Putative effector of murein hydrolase LrgA [General function prediction only]
Probab=20.25 E-value=6.8e+02 Score=22.96 Aligned_cols=34 Identities=12% Similarity=0.165 Sum_probs=14.7
Q ss_pred hhHHHHH--HhhhccccccccchhhHHHHHHHHHHH
Q 036516 255 LLPVFCA--ISGIRMELYLINEKSFIKIEFIILMSY 288 (709)
Q Consensus 255 flPlFF~--~~G~~~d~~~l~~~~~~~~~~ii~~~~ 288 (709)
.+++||+ .+|.---.+.+....+...+.+++..+
T Consensus 66 ~m~llFVPa~VgVm~y~~~l~~~~~~Il~~~iiST~ 101 (128)
T COG1380 66 NMALLFVPAGVGVMNYFDLLAADGLPILVVIIISTL 101 (128)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4677775 444332233343333443333333333
No 259
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=20.16 E-value=8.4e+02 Score=25.37 Aligned_cols=48 Identities=15% Similarity=0.041 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHHHhcCcceEEEEEEEEccCCChhHHHHHHHhhcCccEEEe
Q 036516 447 STQLINAFTQFQRCYYGHVVVQHFTTIAPYATMHDDVCTLALDKRVVIIIV 497 (709)
Q Consensus 447 ~~~i~~af~~~~~~~~~~v~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~ 497 (709)
..++.+.+++..++. +..+..... .....-.....+...++++|=||+
T Consensus 75 ~~~~~~~i~~~~~~~--gy~~~i~~~-~~~~~~~~~~~~~l~~~~vdgiIi 122 (327)
T TIGR02417 75 YARIAKELEQQCREA--GYQLLIACS-DDNPDQEKVVIENLLARQVDALIV 122 (327)
T ss_pred HHHHHHHHHHHHHHC--CCEEEEEeC-CCCHHHHHHHHHHHHHcCCCEEEE
Confidence 355666676665432 333322111 111122334566667788987665
No 260
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=20.13 E-value=8.2e+02 Score=26.22 Aligned_cols=82 Identities=9% Similarity=0.046 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhCCCHHHHHHHHHHhhhhhhHHHHHHHhhhccCccchhHHHHHHHHHHHH-HHHHHHH
Q 036516 280 IEFIILMSYLGKFTGVMVPSLFFGMSFLKASCLALIMCCRGIAEIAVYCMWKDRKIITNQIFAIMITNMVII-TGISTTI 358 (709)
Q Consensus 280 ~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~l~~~~~~~~~~~i~~~~~~~lv~~~ll~-t~i~~pl 358 (709)
....++++++.-+.+-.+..++.|++.-|+..++.--..-..+.++.+...++..-++-+-|...+++.+=+ .+++..+
T Consensus 57 ~~~~~~lg~liPl~~~~iLr~~~~l~~~daaAiAAhYGSVSavTF~~a~~~L~~~gi~yeg~m~a~~alME~PAIival~ 136 (327)
T PF05982_consen 57 LLAAVLLGILIPLIAFPILRRLGKLDRADAAAIAAHYGSVSAVTFAAALAFLESQGISYEGYMVALLALMESPAIIVALL 136 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCChhhHHHHHHHcCchHHHHHHHHHHHHHHCCCCccccHHHHHHHHhhhHHHHHHH
Confidence 344444555555555556666789999999999987777777777776666666666666665544443322 3334444
Q ss_pred HHh
Q 036516 359 VGY 361 (709)
Q Consensus 359 v~~ 361 (709)
+.+
T Consensus 137 L~~ 139 (327)
T PF05982_consen 137 LAR 139 (327)
T ss_pred HHH
Confidence 433
No 261
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=20.10 E-value=7.3e+02 Score=26.08 Aligned_cols=30 Identities=23% Similarity=0.251 Sum_probs=21.2
Q ss_pred ChhHHHHHHHhhcCccEEEecCCccccCCcc
Q 036516 478 TMHDDVCTLALDKRVVIIIVPFHKQWGVGGI 508 (709)
Q Consensus 478 ~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~ 508 (709)
..|+.+.+.+ +++.+.|++|-.++....|.
T Consensus 102 Kvh~~v~~~~-~~G~~iIliG~~gHpEv~Gt 131 (294)
T COG0761 102 KVHKEVERYA-REGYEIILIGHKGHPEVIGT 131 (294)
T ss_pred HHHHHHHHHH-hCCCEEEEEccCCCCceeee
Confidence 5677766666 67889999997666554444
No 262
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=20.07 E-value=3.5e+02 Score=29.61 Aligned_cols=27 Identities=11% Similarity=0.230 Sum_probs=22.2
Q ss_pred HhhhhhhhHhhhhHHHHHHhhhccccc
Q 036516 244 VQKLDFFTSGFLLPVFCAISGIRMELY 270 (709)
Q Consensus 244 ~~kl~~~~~~~flPlFF~~~G~~~d~~ 270 (709)
...++..+++.+|.+||..+|+++.-+
T Consensus 53 ~~~l~~WiNDgLMaiFFf~vGLEiKrE 79 (383)
T PRK14854 53 DKNLMHWINDGLMAIYFLYIGLEIKRE 79 (383)
T ss_pred CCcHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 345667789999999999999999743
Done!