Query 036516
Match_columns 709
No_of_seqs 324 out of 2088
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 03:58:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036516.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036516hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zcd_A Na(+)/H(+) antiporter 1 99.9 5.5E-26 1.9E-30 242.3 13.9 302 27-363 59-384 (388)
2 3mt0_A Uncharacterized protein 99.8 2.1E-17 7.1E-22 172.9 20.6 258 385-698 8-278 (290)
3 3olq_A Universal stress protei 99.8 1.4E-17 4.8E-22 176.5 18.2 279 385-698 8-307 (319)
4 3loq_A Universal stress protei 99.7 2.8E-17 9.7E-22 172.2 17.3 264 385-698 23-292 (294)
5 3cis_A Uncharacterized protein 99.7 9.1E-17 3.1E-21 169.6 19.5 279 384-697 19-307 (309)
6 3ab8_A Putative uncharacterize 99.7 1.3E-16 4.4E-21 164.7 18.0 255 386-695 2-268 (268)
7 3fdx_A Putative filament prote 99.3 4.1E-12 1.4E-16 117.5 10.8 138 385-534 2-142 (143)
8 1mjh_A Protein (ATP-binding do 99.3 2.8E-11 9.7E-16 114.5 13.7 138 385-535 6-158 (162)
9 3s3t_A Nucleotide-binding prot 99.3 1.1E-11 3.6E-16 115.1 9.6 136 385-534 6-145 (146)
10 3hgm_A Universal stress protei 99.3 9.2E-12 3.1E-16 115.6 8.5 135 386-533 4-146 (147)
11 2dum_A Hypothetical protein PH 99.2 4.6E-11 1.6E-15 114.0 12.5 140 385-537 6-157 (170)
12 3dlo_A Universal stress protei 99.2 1.8E-11 6.1E-16 115.4 9.5 130 384-534 24-154 (155)
13 1tq8_A Hypothetical protein RV 99.2 2.3E-11 7.8E-16 115.7 8.7 137 384-535 17-157 (163)
14 2z08_A Universal stress protei 99.2 2.7E-11 9.1E-16 111.3 8.3 132 386-534 4-136 (137)
15 3tnj_A Universal stress protei 99.2 3.5E-11 1.2E-15 112.2 9.1 137 385-536 7-147 (150)
16 2gm3_A Unknown protein; AT3G01 99.2 1.3E-10 4.6E-15 111.4 12.3 143 385-538 6-165 (175)
17 3fg9_A Protein of universal st 99.2 3.7E-11 1.3E-15 113.0 7.5 137 384-534 15-155 (156)
18 3idf_A USP-like protein; unive 99.1 4.8E-11 1.6E-15 109.6 7.2 133 386-534 3-137 (138)
19 1jmv_A USPA, universal stress 99.1 2.4E-10 8.1E-15 105.3 9.2 134 386-537 4-139 (141)
20 1q77_A Hypothetical protein AQ 99.0 1.1E-09 3.6E-14 100.6 8.1 128 385-534 5-137 (138)
21 3mt0_A Uncharacterized protein 98.9 4E-09 1.4E-13 109.8 8.9 137 384-538 134-278 (290)
22 3olq_A Universal stress protei 98.8 4.4E-09 1.5E-13 110.8 9.0 146 384-539 156-308 (319)
23 3loq_A Universal stress protei 98.7 2.3E-08 7.9E-13 104.1 8.6 121 384-536 170-290 (294)
24 3cis_A Uncharacterized protein 98.6 1.1E-07 3.6E-12 99.8 9.3 134 384-535 171-305 (309)
25 3idf_A USP-like protein; unive 98.2 1.1E-05 3.9E-10 73.2 12.5 128 553-694 2-137 (138)
26 3s3t_A Nucleotide-binding prot 98.2 7E-06 2.4E-10 75.4 10.6 131 552-695 5-146 (146)
27 3ab8_A Putative uncharacterize 98.2 1.8E-06 6.1E-11 88.3 7.1 113 385-534 155-267 (268)
28 3dlo_A Universal stress protei 98.1 3.3E-06 1.1E-10 79.0 7.0 127 552-695 24-155 (155)
29 3hgm_A Universal stress protei 98.0 6.2E-06 2.1E-10 75.8 7.0 130 553-694 3-147 (147)
30 2z08_A Universal stress protei 98.0 1.8E-05 6.3E-10 71.8 9.9 127 553-695 3-137 (137)
31 3tnj_A Universal stress protei 98.0 1.3E-05 4.5E-10 73.9 9.0 129 552-697 6-148 (150)
32 3fdx_A Putative filament prote 98.0 2.2E-05 7.7E-10 71.6 10.0 127 553-695 2-143 (143)
33 2dum_A Hypothetical protein PH 98.0 2.8E-05 9.5E-10 73.5 9.9 133 552-698 5-158 (170)
34 1mjh_A Protein (ATP-binding do 97.9 6.7E-05 2.3E-09 70.1 12.3 132 552-697 5-160 (162)
35 3fg9_A Protein of universal st 97.9 2.3E-05 7.8E-10 72.9 8.2 131 552-695 15-156 (156)
36 1jmv_A USPA, universal stress 97.9 8.5E-05 2.9E-09 67.6 11.5 126 553-697 3-139 (141)
37 1tq8_A Hypothetical protein RV 97.8 7.8E-05 2.7E-09 70.2 10.2 132 552-697 17-159 (163)
38 2gm3_A Unknown protein; AT3G01 97.6 0.00051 1.7E-08 65.0 12.3 133 552-698 5-165 (175)
39 3zux_A Transporter, ASBTNM; tr 97.5 0.052 1.8E-06 57.0 27.1 111 28-150 41-155 (332)
40 1q77_A Hypothetical protein AQ 97.4 0.00016 5.5E-09 65.5 6.1 38 552-589 4-41 (138)
41 3g40_A Na-K-CL cotransporter; 96.2 0.067 2.3E-06 54.0 14.3 222 384-658 20-256 (294)
42 1zun_A Sulfate adenylyltransfe 76.0 4.8 0.00016 41.7 7.3 55 554-618 48-102 (325)
43 3zux_A Transporter, ASBTNM; tr 68.1 63 0.0022 33.2 13.7 93 227-327 28-123 (332)
44 1iv0_A Hypothetical protein; r 67.5 12 0.0004 31.4 6.4 58 477-538 37-94 (98)
45 3gr7_A NADPH dehydrogenase; fl 60.1 1.6E+02 0.0054 30.3 15.6 123 507-656 188-310 (340)
46 3fwk_A FMN adenylyltransferase 58.0 12 0.0004 38.3 5.5 91 554-657 60-171 (308)
47 1efv_B Electron transfer flavo 55.8 21 0.00073 35.4 7.0 92 562-669 39-144 (255)
48 1efp_B ETF, protein (electron 55.5 27 0.00094 34.5 7.7 92 562-669 36-141 (252)
49 1sur_A PAPS reductase; assimil 53.5 54 0.0018 31.1 9.4 51 554-618 46-96 (215)
50 2wsi_A FAD synthetase; transfe 52.4 63 0.0022 32.8 10.1 93 554-658 55-169 (306)
51 2oq2_A Phosphoadenosine phosph 52.4 23 0.00077 35.2 6.6 55 554-619 43-97 (261)
52 1o97_C Electron transferring f 52.0 20 0.00069 35.8 6.1 93 562-669 36-140 (264)
53 1nu0_A Hypothetical protein YQ 51.4 23 0.00078 31.6 5.7 60 477-539 39-98 (138)
54 1ni5_A Putative cell cycle pro 43.5 40 0.0014 36.2 7.2 96 553-657 14-119 (433)
55 1wy5_A TILS, hypothetical UPF0 40.4 35 0.0012 34.8 6.0 58 553-618 25-83 (317)
56 1vhx_A Putative holliday junct 40.4 54 0.0018 29.5 6.5 60 476-538 40-99 (150)
57 3a2k_A TRNA(Ile)-lysidine synt 35.7 36 0.0012 36.8 5.4 59 553-618 19-77 (464)
58 2k4m_A TR8_protein, UPF0146 pr 29.7 80 0.0027 28.5 5.6 38 468-505 91-128 (153)
59 3dbi_A Sugar-binding transcrip 28.8 94 0.0032 31.3 7.0 108 446-586 77-187 (338)
60 2o8v_A Phosphoadenosine phosph 28.1 2.3E+02 0.0079 27.5 9.5 51 554-618 47-97 (252)
61 3o4f_A Spermidine synthase; am 27.6 40 0.0014 34.2 3.7 69 571-656 97-167 (294)
62 3egc_A Putative ribose operon 27.3 2E+02 0.007 27.8 9.1 110 445-587 21-132 (291)
63 2l0e_A Sodium/hydrogen exchang 24.3 12 0.0004 24.7 -0.7 27 93-119 4-30 (33)
64 3kke_A LACI family transcripti 24.2 2.1E+02 0.0072 28.0 8.6 109 446-587 29-138 (303)
65 2l82_A Designed protein OR32; 23.9 3.2E+02 0.011 22.8 11.0 83 554-657 3-88 (162)
66 3o74_A Fructose transport syst 23.4 4.7E+02 0.016 24.6 11.6 110 445-587 15-127 (272)
67 3gxq_A Putative regulator of t 22.8 55 0.0019 22.6 2.4 27 463-493 10-36 (54)
No 1
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=99.93 E-value=5.5e-26 Score=242.28 Aligned_cols=302 Identities=14% Similarity=0.141 Sum_probs=216.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhcChHHH----Hhhhh--hHHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhhHHHHHHHH
Q 036516 27 VLRTFAEFGMILHAFVLGVQIDLGLV----KHIRK--RAVIIGITSTLLPLVFGLSSFRIVQRISHLDDETASSIAASVV 100 (709)
Q Consensus 27 ~l~~la~iGli~~lF~~Gle~d~~~l----~~~~~--~~~~i~~~~~~ip~~~g~~~~~~l~~~~~~~~~~~~~~l~l~~ 100 (709)
....+.+-.+.+|||.+|+|+|.+.+ ++.+| .+...++.|+++|++++.. + .... ........
T Consensus 59 l~~windglm~lFff~vGLEik~e~l~G~L~~~~~a~~p~~aAlgGmivP~~iy~~----~-~~~~------~~~~~gw~ 127 (388)
T 1zcd_A 59 MLLWINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPALLYLA----F-NYAD------PITREGWA 127 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHHHGG----G-CCSS------TTHHHHTS
T ss_pred HHHHHhhHhHHHHHHHHHHHhhHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHHH----H-hcCC------hhhhhhhH
Confidence 34556666677999999999999987 55555 3788899999999988422 2 2211 22345556
Q ss_pred HHhhchHHHHHHHHHHhcccc-ChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccchhhHHHHHHHHHHHHHHHHHH
Q 036516 101 VNSMTSLVVITGLLKELKMLN-SELGRLAASITIVSHIFGWSASMILLSVRDSQDNLTTIKPLYITLVVIVYYIIVIFLV 179 (709)
Q Consensus 101 ~ls~Ts~~vv~~iL~el~ll~-s~~G~lals~a~v~D~~~~~ll~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~ 179 (709)
+.+.|+.+....++..++... +..++.+++.|++||+.+|++++++.+ ++ ....+ +...+++++...
T Consensus 128 ip~ATdIAfal~vL~~lg~~~p~~l~~flLalAvvDDl~aiivIAvfyt---~~--~~~~~----l~~~~~~~~~~~--- 195 (388)
T 1zcd_A 128 IPAATDIAFALGVLALLGSRVPLALKIFLMALAIIDDLGAIIIIALFYT---ND--LSMAS----LGVAAVAIAVLA--- 195 (388)
T ss_dssp SSSCCCHHHHHHHHHSSCSSSCSSSHHHHHHHHHHHHHHHHHHHHHHSC---CC--CCHHH----HHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHc---CC--ccHHH----HHHHHHHHHHHH---
Confidence 677799999999999987644 456699999999999999999998853 11 11112 222222222211
Q ss_pred HHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHhcCCCC----ChhhHHHhhhhhhhHhhh
Q 036516 180 RPLTMRIVSKNSEEESMNQNHFIITICIVLVTTILGTLVGQNSILTAFFFGLCLPDGP----PLGTQLVQKLDFFTSGFL 255 (709)
Q Consensus 180 r~~~~~i~~~~~~~~~~~e~~~~~vl~~~l~~~~~~~~~G~~~~lGaf~~Gl~ip~~~----~~~~~l~~kl~~~~~~~f 255 (709)
++.|+. +++...+.++ .+ .+.+.++..|+|+++|+|++|+++|..+ +..+++++++++++..++
T Consensus 196 -----~l~r~~-----v~~~~~y~~l-gl-~~w~~~~~sGvHatigg~l~Gl~ip~~~~~~~~~~~~le~~l~p~v~~~i 263 (388)
T 1zcd_A 196 -----VLNLCG-----ARRTGVYILV-GV-VLWTAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAKRLEHVLHPWVAYLI 263 (388)
T ss_dssp -----HHHHTT-----CCCTHHHHHH-HH-HHHHHTTTSHHHHHHHHHHHHHHSCCCGGGSSCHHHHHHHHHHHHHHHTH
T ss_pred -----HHHHhc-----chhHHHHHHH-HH-HHHHHHHHhCccHHHHHHHHHHhccCCCccCCCHHHHHHHHHHHHHHHHH
Confidence 112221 1223334433 22 4456679999999999999999999853 357899999999999999
Q ss_pred hHHH-HHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHhHhhh----------CCCHHHHHHHHHHhhhhhhHHH
Q 036516 256 LPVF-CAISGIRMELYLINEKSFIKIEFIILMSYLGKFTGVMVPSLFF----------GMSFLKASCLALIMCCRGIAEI 324 (709)
Q Consensus 256 lPlF-F~~~G~~~d~~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~~~~~~lg~~m~~kG~~~l 324 (709)
+|+| |+..|+++|...+....-.....+++..++||++|++..++.. |++|+|...+|++++.++++++
T Consensus 264 lPlFaFanaGv~l~~~~~~~l~~~~~lgi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~~~~~~vg~L~gigftmsL 343 (388)
T 1zcd_A 264 LPLFAFANAGVSLQGVTLDGLTSILPLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQIMVVGILCGIGFTMSI 343 (388)
T ss_dssp HHHHHHHHCCCCCSSSCCCTHHHHSSTTTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCGGGGTTHHHHTTCCHHHHH
T ss_pred HHHHHHHhcCeeecccchhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCCCHHHHHHHHHHhccchHHHH
Confidence 9999 9999999997533211101112444555899999955555444 8999999999999999999999
Q ss_pred HHHHhhhccCc--cchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 036516 325 AVYCMWKDRKI--ITNQIFAIMITNMVIITGISTTIVGYLY 363 (709)
Q Consensus 325 ~~~~~~~~~~~--i~~~~~~~lv~~~ll~t~i~~plv~~ly 363 (709)
++++++++.+. +.++.+..+++++++++.+.+.++++.+
T Consensus 344 ~Ia~laf~~~~~~~~~~ak~~il~~s~~s~i~g~~~L~~~~ 384 (388)
T 1zcd_A 344 FIASLAFGSVDPELINWAKLGILVGSISSAVIGYSWLRVRL 384 (388)
T ss_dssp HHHHHHSTTSSCSSHHHHHHHHHHHHHTTTSTTTGGGTTTC
T ss_pred HHHHHhccCCchhhHhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999998876 3567799999999997777777676544
No 2
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.76 E-value=2.1e-17 Score=172.94 Aligned_cols=258 Identities=14% Similarity=0.099 Sum_probs=172.7
Q ss_pred ceeEEEeccCCChHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCccccccCccccccchhchhHHHHHHHHHHHhcCcc
Q 036516 385 LRILVCIHKEQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLKPHHQQTKSEAASSTQLINAFTQFQRCYYGH 464 (709)
Q Consensus 385 ~riLv~v~~~~~~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~~ 464 (709)
-|||||++++++...+++.+..++.. ...+++++|+++ + . ......++..+.++ ..+
T Consensus 8 ~~ILv~~D~s~~s~~al~~A~~la~~--~~a~l~ll~v~~-~---------~-----~~~~~l~~~~~~~~------~~~ 64 (290)
T 3mt0_A 8 RSILVVIEPDQLEGLALKRAQLIAGV--TQSHLHLLVCEK-R---------R-----DHSAALNDLAQELR------EEG 64 (290)
T ss_dssp CEEEEECCSSCSCCHHHHHHHHHHHH--HCCEEEEEEECS-S---------S-----CCHHHHHHHHHHHH------HTT
T ss_pred ceEEEEeCCCccchHHHHHHHHHHHh--cCCeEEEEEeeC-c---------H-----HHHHHHHHHHHHHh------hCC
Confidence 58999999999999999999888843 446899999987 1 1 11112222222222 245
Q ss_pred eEEEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEEEecCCCCCCC
Q 036516 465 VVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGILVHRGQNKSNR 544 (709)
Q Consensus 465 v~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIlvdrg~~~~~~ 544 (709)
++++.....+ .+..+.|++.|+++++||||||+|++...++. .+|++.+++++++||||.++......
T Consensus 65 ~~~~~~~~~~--g~~~~~i~~~a~~~~~dliV~G~~~~~~~~~~------~~gs~~~~vl~~~~~PVlvv~~~~~~---- 132 (290)
T 3mt0_A 65 YSVSTNQAWK--DSLHQTIIAEQQAEGCGLIIKQHFPDNPLKKA------ILTPDDWKLLRFAPCPVLMTKTARPW---- 132 (290)
T ss_dssp CCEEEEEECS--SSHHHHHHHHHHHHTCSEEEEECCCSCTTSTT------SCCHHHHHHHHHCSSCEEEECCCSCS----
T ss_pred CeEEEEEEeC--CCHHHHHHHHHHhcCCCEEEEecccCCchhhc------ccCHHHHHHHhcCCCCEEEecCCCCC----
Confidence 7777766543 57999999999999999999999988655443 48999999999999999886422211
Q ss_pred cccCCCcceEEEEeeccCcC-------hHHHHHHHHHHhcCCCeEEEEEEeeecCCCCCCCCC-CC---chhHHHHHHHH
Q 036516 545 PVYTGELLYHIVMLFIGGAD-------DREALAYSRRMAEHPNTSLTVVWFITTDQNRPSTEM-PD---DHELDNQAFDE 613 (709)
Q Consensus 545 ~~~~~~~~~~V~~~f~Gg~d-------dreAl~~a~rma~~~~~~ltvl~v~~~~~~~~~~~~-~~---~~~~d~~~l~~ 613 (709)
...+|++++-|+++ ++.|+++|.++|+..+++++++|+.++........+ +. .++..++.+++
T Consensus 133 ------~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 206 (290)
T 3mt0_A 133 ------TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLAKATLHVISAHPSPMLSSADPTFQLSETIEARYREACRT 206 (290)
T ss_dssp ------TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEC---------CHHHHHHHHHHHHHHHHH
T ss_pred ------CCCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHHcCCeEEEEEEecCccccccCchhHHHHHHHHHHHHHHHH
Confidence 23579999998888 799999999999999999999999873211000000 00 01223345555
Q ss_pred HhhhcCC-C-cEEEEEEeecChhhHHHHHHhhhcCCcEEEEecCCCCCcccccccCcCCCCCccchhhhhhhcCCCCcce
Q 036516 614 FKDSMVG-N-KIIFREEIVKDGIGTTQVIQAFAETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEFSV 691 (709)
Q Consensus 614 ~~~~~~~-~-~v~y~e~~v~~g~~~~~~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~Sv 691 (709)
+..++.- . .....+.. -.+++.+.+++. ++||+++|+++.. |+.+| =+|-+.+-+... ..|+|
T Consensus 207 ~~~~~g~~~~~~~v~~g~--~~~~I~~~a~~~--~~dLiVmG~~g~~------~~~~~----~~Gsv~~~vl~~-~~~pV 271 (290)
T 3mt0_A 207 FQAEYGFSDEQLHIEEGP--ADVLIPRTAQKL--DAVVTVIGTVART------GLSGA----LIGNTAEVVLDT-LESDV 271 (290)
T ss_dssp HHHHHTCCTTTEEEEESC--HHHHHHHHHHHH--TCSEEEEECCSSC------CGGGC----CSCHHHHHHHTT-CSSEE
T ss_pred HHHHcCCCcceEEEeccC--HHHHHHHHHHhc--CCCEEEECCCCCc------CCcce----ecchHHHHHHhc-CCCCE
Confidence 5544321 1 22222211 123344555543 7999999998742 23333 388888888764 56799
Q ss_pred EEEeecC
Q 036516 692 LVVQQQP 698 (709)
Q Consensus 692 Lvvqq~~ 698 (709)
|||..+.
T Consensus 272 Lvv~~~~ 278 (290)
T 3mt0_A 272 LVLKPDD 278 (290)
T ss_dssp EEECCHH
T ss_pred EEECCCC
Confidence 9998653
No 3
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.75 E-value=1.4e-17 Score=176.46 Aligned_cols=279 Identities=12% Similarity=0.084 Sum_probs=173.6
Q ss_pred ceeEEEeccCCChHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCccccccCccccccchhchhHHHHHHHHHHHh-cCc
Q 036516 385 LRILVCIHKEQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLKPHHQQTKSEAASSTQLINAFTQFQRC-YYG 463 (709)
Q Consensus 385 ~riLv~v~~~~~~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~-~~~ 463 (709)
-|||||++++++....++.+..++. .....++++|+++......+-...............++..+.++++.+. ...
T Consensus 8 k~ILv~~D~s~~s~~al~~A~~lA~--~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 85 (319)
T 3olq_A 8 QNLLVVIDPNQDDQPALRRAVYIVQ--RNGGRIKAFLPVYDLSYDMTTLLSPDERNAMRKGVINQKTAWIKQQARYYLEA 85 (319)
T ss_dssp CEEEEECCTTCSCCHHHHHHHHHHH--HHCCEEEEEEEECCGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ceEEEEECCCcccHHHHHHHHHHHH--HcCCeEEEEEEecccchhhccccChhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5899999999999999999988884 3457999999986321110000000000000001111222233333221 135
Q ss_pred ceEEEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEEEecCCCCCC
Q 036516 464 HVVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGILVHRGQNKSN 543 (709)
Q Consensus 464 ~v~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIlvdrg~~~~~ 543 (709)
+++++..+... .+..+.|++.|+++++||||||+|++.+.++. .+|++.++|++++||||.++.++...
T Consensus 86 ~v~~~~~~~~~--g~~~~~i~~~a~~~~~DLiV~G~~g~~~~~~~------~~Gs~~~~vl~~~~~PVlvv~~~~~~--- 154 (319)
T 3olq_A 86 GIQIDIKVIWH--NRPYEAIIEEVITDKHDLLIKMAHQHDKLGSL------IFTPLDWQLLRKCPAPVWMVKDKEWP--- 154 (319)
T ss_dssp TCCEEEEEEEC--SCHHHHHHHHHHHHTCSEEEEEEBCC--CCSC------BCCHHHHHHHHHCSSCEEEEESSCCC---
T ss_pred CCeEEEEEEec--CChHHHHHHHHHhcCCCEEEEecCcCchhhcc------cccccHHHHHhcCCCCEEEecCcccc---
Confidence 68888776633 48999999999999999999999987655443 48999999999999999887543211
Q ss_pred CcccCCCcceEEEEeeccCcC-------hHHHHHHHHHHhcCC--CeEEEEEEeeecCCCCC-C--CCCCCc------hh
Q 036516 544 RPVYTGELLYHIVMLFIGGAD-------DREALAYSRRMAEHP--NTSLTVVWFITTDQNRP-S--TEMPDD------HE 605 (709)
Q Consensus 544 ~~~~~~~~~~~V~~~f~Gg~d-------dreAl~~a~rma~~~--~~~ltvl~v~~~~~~~~-~--~~~~~~------~~ 605 (709)
...+|++.+-|+++ ++.|+++|.++|+.. +++++++|+.++..... . +..+.+ ++
T Consensus 155 -------~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (319)
T 3olq_A 155 -------EYGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKDPDVHLLSAYPVAPINIAIELPDFDPNLYNNALRG 227 (319)
T ss_dssp -------TTCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEECCCSCSCCTTCTTCCHHHHHHHHHH
T ss_pred -------cCCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCcchhhhccCCcccHHHHHHHHHH
Confidence 13579999998885 499999999999987 99999999987322100 0 001100 11
Q ss_pred HHHHHHHHHhhhcCCC--cEEEEEEeecChhhHHHHHHhhhcCCcEEEEecCCCCCcccccccCcCCCCCccchhhhhhh
Q 036516 606 LDNQAFDEFKDSMVGN--KIIFREEIVKDGIGTTQVIQAFAETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLV 683 (709)
Q Consensus 606 ~d~~~l~~~~~~~~~~--~v~y~e~~v~~g~~~~~~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~la 683 (709)
..++.++++..++... .....+... .+++.+.+++ .++||++||+++.. |+.+| =+|-+.+-+.
T Consensus 228 ~~~~~l~~~~~~~~~~~~~~~v~~g~~--~~~I~~~a~~--~~~dLiV~G~~g~~------~~~~~----~~Gsv~~~vl 293 (319)
T 3olq_A 228 QHLIAMKELRQKFSIPEEKTHVKEGLP--EQVIPQVCEE--LNAGIVVLGILGRT------GLSAA----FLGNTAEQLI 293 (319)
T ss_dssp HHHHHHHHHHHHTTCCGGGEEEEESCH--HHHHHHHHHH--TTEEEEEEECCSCC------STHHH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccEEEecCCc--HHHHHHHHHH--hCCCEEEEeccCcc------CCccc----cccHHHHHHH
Confidence 2234555555444211 221111111 2334444443 37999999998642 22222 3788887777
Q ss_pred cCCCCcceEEEeecC
Q 036516 684 NSNDEFSVLVVQQQP 698 (709)
Q Consensus 684 s~d~~~SvLvvqq~~ 698 (709)
.. ..|+||||..+.
T Consensus 294 ~~-~~~pVLvv~~~~ 307 (319)
T 3olq_A 294 DH-IKCDLLAIKPDG 307 (319)
T ss_dssp TT-CCSEEEEECCTT
T ss_pred hh-CCCCEEEECCCC
Confidence 64 567999998765
No 4
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.74 E-value=2.8e-17 Score=172.20 Aligned_cols=264 Identities=11% Similarity=0.078 Sum_probs=174.4
Q ss_pred ceeEEEeccCCChHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCccccccCccc--cccchhchhHHHHHHHHHHHhcC
Q 036516 385 LRILVCIHKEQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLKPHHQQ--TKSEAASSTQLINAFTQFQRCYY 462 (709)
Q Consensus 385 ~riLv~v~~~~~~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~--~~~~~~~~~~i~~af~~~~~~~~ 462 (709)
-|||||++++++...+++.+..++. ....+++++|+++.+...... ...... .+......++.++.+.+..+ .
T Consensus 23 ~~ILv~vD~s~~s~~al~~A~~lA~--~~~a~l~ll~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~ 97 (294)
T 3loq_A 23 NAMLLPTDLSENSFKVLEYLGDFKK--VGVEEIGVLFVINLTKLSTVS-GGIDIDHYIDEMSEKAEEVLPEVAQKIE--A 97 (294)
T ss_dssp CEEEEECCSCTGGGGGGGGHHHHHH--TTCCEEEEECCEECTTC------CCCTTHHHHHHHHHHHHHHHHHHHHHH--H
T ss_pred ccEEEecCCCHHHHHHHHHHHHHHh--hcCCEEEEEEEecCccccccc-ccccHHHHHHHHHHHHHHHHHHHHHHHH--H
Confidence 4899999999999999999988884 445899999999876422110 000000 00122333444554444433 2
Q ss_pred cceEEEE-EEE-EccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEEEecCCC
Q 036516 463 GHVVVQH-FTT-IAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGILVHRGQN 540 (709)
Q Consensus 463 ~~v~v~~-~~~-vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIlvdrg~~ 540 (709)
.+++++. .+. .+ +..+.| .|+++++|+||||.|++.+..+ ..+|++.++|++++||||.|+.+....
T Consensus 98 ~g~~~~~~~v~~~g---~~~~~I--~a~~~~~DliV~G~~g~~~~~~------~~~Gs~~~~vl~~~~~PVlvv~~~~~~ 166 (294)
T 3loq_A 98 AGIKAEVIKPFPAG---DPVVEI--IKASENYSFIAMGSRGASKFKK------ILLGSVSEGVLHDSKVPVYIFKHDMVV 166 (294)
T ss_dssp TTCEEEECSSCCEE---CHHHHH--HHHHTTSSEEEEECCCCCHHHH------HHHCCHHHHHHHHCSSCEEEECCCTTT
T ss_pred cCCCcceeEeeccC---ChhHhe--eeccCCCCEEEEcCCCCccccc------eeeccHHHHHHhcCCCCEEEecCcccc
Confidence 4677776 444 44 889999 9999999999999998754332 257999999999999999886443221
Q ss_pred CCCCcccCCCcceEEEEeeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCCCCCCCCchhHHHHHHHHHhhhcCC
Q 036516 541 KSNRPVYTGELLYHIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFITTDQNRPSTEMPDDHELDNQAFDEFKDSMVG 620 (709)
Q Consensus 541 ~~~~~~~~~~~~~~V~~~f~Gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~ 620 (709)
. ....+|++++-|++++++|+++|.++++..+++++++++.++.. .++..+++.+.++....
T Consensus 167 ~--------~~~~~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~---------~~~~l~~~~~~l~~~~~- 228 (294)
T 3loq_A 167 N--------SLFDRVLVAYDFSKWADRALEYAKFVVKKTGGELHIIHVSEDGD---------KTADLRVMEEVIGAEGI- 228 (294)
T ss_dssp T--------CTTSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEECSSSC---------CHHHHHHHHHHHHHTTC-
T ss_pred C--------ccCCEEEEEECCCHHHHHHHHHHHHHhhhcCCEEEEEEEccCch---------HHHHHHHHHHHHHHcCC-
Confidence 1 12358999999999999999999999999999999999975211 23334444444443322
Q ss_pred CcEEEEEEeecChhhHHHHHHhhh--cCCcEEEEecCCCCCcccccccCcCCCCCccchhhhhhhcCCCCcceEEEeecC
Q 036516 621 NKIIFREEIVKDGIGTTQVIQAFA--ETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEFSVLVVQQQP 698 (709)
Q Consensus 621 ~~v~y~e~~v~~g~~~~~~i~~~~--~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~SvLvvqq~~ 698 (709)
.+. ..+..| +..+.|.+.. .++||+++|+++.. ++.+| -+|-+.+-+... ..++||||.+..
T Consensus 229 -~~~---~~~~~g-~~~~~I~~~a~~~~~dLlV~G~~~~~------~~~~~----~~Gs~~~~vl~~-~~~pvLvv~~~~ 292 (294)
T 3loq_A 229 -EVH---VHIESG-TPHKAILAKREEINATTIFMGSRGAG------SVMTM----ILGSTSESVIRR-SPVPVFVCKRGD 292 (294)
T ss_dssp -CEE---EEEECS-CHHHHHHHHHHHTTCSEEEEECCCCS------CHHHH----HHHCHHHHHHHH-CSSCEEEECSCT
T ss_pred -cEE---EEEecC-CHHHHHHHHHHhcCcCEEEEeCCCCC------Cccce----eeCcHHHHHHhc-CCCCEEEECCCC
Confidence 222 223333 3444443333 37999999998742 22222 367777766653 556999998764
No 5
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.73 E-value=9.1e-17 Score=169.63 Aligned_cols=279 Identities=14% Similarity=0.111 Sum_probs=174.7
Q ss_pred cceeEEEeccCCChHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCccc-cccCccccccchhchhHHHHHHHHHHHhc-
Q 036516 384 SLRILVCIHKEQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAF-LKPHHQQTKSEAASSTQLINAFTQFQRCY- 461 (709)
Q Consensus 384 e~riLv~v~~~~~~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~-~~~~~~~~~~~~~~~~~i~~af~~~~~~~- 461 (709)
--|||||++++++...+++.+..++. ....+++++|+++......+. ..+.+.. +......++.++.+.+..+..
T Consensus 19 ~~~ILv~~D~s~~s~~al~~A~~lA~--~~~a~l~ll~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~ 95 (309)
T 3cis_A 19 SLGIIVGIDDSPAAQVAVRWAARDAE--LRKIPLTLVHAVSPEVATWLEVPLPPGVL-RWQQDHGRHLIDDALKVVEQAS 95 (309)
T ss_dssp TTEEEEECCSSHHHHHHHHHHHHHHH--HHTCCEEEEEECCCCCCCTTCCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCHHHHHHHHHHHHHHH--hcCCcEEEEEEecCcccccccCCCCchhh-HHHHHHHHHHHHHHHHHHHHhc
Confidence 46899999999999999999888874 334689999999722111010 0000000 011222333444433332221
Q ss_pred --CcceEEEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEEEecCC
Q 036516 462 --YGHVVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGILVHRGQ 539 (709)
Q Consensus 462 --~~~v~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIlvdrg~ 539 (709)
..+++++..+..+ +..+.|++.|+ ++|+||||.|++.+..+. .+|++.++|++++||||.|+..+..
T Consensus 96 ~~~~~~~~~~~~~~g---~~~~~I~~~a~--~~DliV~G~~g~~~~~~~------~~Gs~~~~vl~~~~~PVlvv~~~~~ 164 (309)
T 3cis_A 96 LRAGPPTVHSEIVPA---AAVPTLVDMSK--DAVLMVVGCLGSGRWPGR------LLGSVSSGLLRHAHCPVVIIHDEDS 164 (309)
T ss_dssp SSSCCSCEEEEEESS---CHHHHHHHHGG--GEEEEEEESSCTTCCTTC------CSCHHHHHHHHHCSSCEEEECTTCC
T ss_pred ccCCCceEEEEEecC---CHHHHHHHHhc--CCCEEEECCCCCcccccc------ccCcHHHHHHHhCCCCEEEEcCCcc
Confidence 1257777765544 89999999996 899999999987665443 4899999999999999988654332
Q ss_pred CCCCCcccCCCcceEEEEeeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCCCCCCCCc--hhHHHHHHHHHh--
Q 036516 540 NKSNRPVYTGELLYHIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFITTDQNRPSTEMPDD--HELDNQAFDEFK-- 615 (709)
Q Consensus 540 ~~~~~~~~~~~~~~~V~~~f~Gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~~~~~~~~~~--~~~d~~~l~~~~-- 615 (709)
.. ......+|++.+-|++.++.|+++|.++|+..+++++++++.++......+....+ ++..++.+++..
T Consensus 165 ~~------~~~~~~~Ilv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 238 (309)
T 3cis_A 165 VM------PHPQQAPVLVGVDGSSASELATAIAFDEASRRNVDLVALHAWSDVDVSEWPGIDWPATQSMAEQVLAERLAG 238 (309)
T ss_dssp CS------CSSCCCCEEEECCSSHHHHHHHHHHHHHHHHTTCCEEEEEESCSSCCTTCSSCCHHHHHHHHHHHHHHHHTT
T ss_pred cC------CCCCCCeEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEEEeecccccCCCcccHHHHHHHHHHHHHHHHHH
Confidence 10 01123479999999999999999999999999999999999863221000011111 112223344333
Q ss_pred --hhcCCCcEEEEEEeecChhhHHHHHHhhhcCCcEEEEecCCCCCcccccccCcCCCCCccchhhhhhhcCCCCcceEE
Q 036516 616 --DSMVGNKIIFREEIVKDGIGTTQVIQAFAETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEFSVLV 693 (709)
Q Consensus 616 --~~~~~~~v~y~e~~v~~g~~~~~~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~SvLv 693 (709)
.++.+-.+.+ .+..| +..+.|.+.++++||++||+++.. ++.+| -+|-+.+-+... ..++|||
T Consensus 239 ~~~~~~~~~~~~---~~~~g-~~~~~I~~~a~~adliV~G~~~~~------~~~~~----l~Gsv~~~vl~~-~~~pVlv 303 (309)
T 3cis_A 239 WQERYPNVAITR---VVVRD-QPARQLVQRSEEAQLVVVGSRGRG------GYAGM----LVGSVGETVAQL-ARTPVIV 303 (309)
T ss_dssp HHHHCTTSCEEE---EEESS-CHHHHHHHHHTTCSEEEEESSCSS------CCTTC----SSCHHHHHHHHH-CSSCEEE
T ss_pred HHhhCCCCcEEE---EEEcC-CHHHHHHHhhCCCCEEEECCCCCC------Ccccc----ccCcHHHHHHhc-CCCCEEE
Confidence 2222113322 23344 355666555668999999998742 22222 378777776653 4569999
Q ss_pred Eeec
Q 036516 694 VQQQ 697 (709)
Q Consensus 694 vqq~ 697 (709)
|..+
T Consensus 304 v~~~ 307 (309)
T 3cis_A 304 ARES 307 (309)
T ss_dssp ECC-
T ss_pred eCCC
Confidence 9753
No 6
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.71 E-value=1.3e-16 Score=164.75 Aligned_cols=255 Identities=14% Similarity=0.094 Sum_probs=166.5
Q ss_pred eeEEEeccCCChHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCcc--cccc---Cccc------cccchhchhHHHHHH
Q 036516 386 RILVCIHKEQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTA--FLKP---HHQQ------TKSEAASSTQLINAF 454 (709)
Q Consensus 386 riLv~v~~~~~~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~--~~~~---~~~~------~~~~~~~~~~i~~af 454 (709)
|||+|++++++...+++.+..++. ....+++++|+++.+....+ .... .+.. .+......++.++.+
T Consensus 2 ~ILv~vD~s~~s~~al~~A~~lA~--~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 79 (268)
T 3ab8_A 2 RILLATDGSPQARGAEALAEWLAY--KLSAPLTVLFVVDTRLARIPELLDFGALTVPVPVLRTELERALALRGEAVLERV 79 (268)
T ss_dssp CEEEECCSCGGGHHHHHHHHHHHH--HHTCCEEEEEEEEHHHHTHHHHC-------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEcCCCHHHHHHHHHHHHHHH--HhCCcEEEEEEeccCCcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999988874 33478999999986421100 0000 0000 001112233444444
Q ss_pred HHHHHhcCcceEEEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccc-cCCcceeccchhhHHHHHHHhhcCCccEEE
Q 036516 455 TQFQRCYYGHVVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQW-GVGGILESTDLSIRALNRNVLHKAPCSVGI 533 (709)
Q Consensus 455 ~~~~~~~~~~v~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~-~~~g~~~~~~~~~~~~~~~Vl~~apCsVgI 533 (709)
.+..+ ..+++++..+..+ +..+.|++. ++++|+||||.|++. +..+. .+|++.++|++++||||.+
T Consensus 80 ~~~~~--~~g~~~~~~~~~g---~~~~~I~~~--~~~~dliV~G~~g~~~~~~~~------~~Gs~~~~v~~~a~~PVlv 146 (268)
T 3ab8_A 80 RQSAL--AAGVAVEAVLEEG---VPHEAILRR--ARAADLLVLGRSGEAHGDGFG------GLGSTADRVLRASPVPVLL 146 (268)
T ss_dssp HHHHH--HTTCCEEEEEEEE---CHHHHHHHH--HTTCSEEEEESSCTTSCTTCC------SCCHHHHHHHHHCSSCEEE
T ss_pred HHHHH--hCCCCeEEEEecC---CHHHHHHhh--ccCCCEEEEeccCCCcccccc------ccchhHHHHHHhCCCCEEE
Confidence 44332 2457777766655 899999999 899999999999876 55443 4899999999999999987
Q ss_pred EEecCCCCCCCcccCCCcceEEEEeeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCCCCCCCCchhHHHHHHHH
Q 036516 534 LVHRGQNKSNRPVYTGELLYHIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFITTDQNRPSTEMPDDHELDNQAFDE 613 (709)
Q Consensus 534 lvdrg~~~~~~~~~~~~~~~~V~~~f~Gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~~~~~~~~~~~~~d~~~l~~ 613 (709)
+..+.. ...+|++++-|+++++.|+++|.++++..+++++++|+.++.+ ..++..++..+.
T Consensus 147 v~~~~~-----------~~~~ilv~~d~s~~~~~al~~a~~la~~~~a~l~ll~v~~~~~--------~~~~~l~~~~~~ 207 (268)
T 3ab8_A 147 APGEPV-----------ELEGALLGYDASESAVRALHALAPLARALGLGVRVVSVHEDPA--------RAEAWALEAEAY 207 (268)
T ss_dssp ECSSCC-----------CCCEEEEECCSCHHHHHHHHHHHHHHHHHTCCEEEEEECSSHH--------HHHHHHHHHHHH
T ss_pred ECCCCC-----------CCCEEEEEECCCHHHHHHHHHHHHhhhcCCCEEEEEEEcCcHH--------HHHHHHHHHHHH
Confidence 643221 1247999999999999999999999999999999999875210 112222233333
Q ss_pred HhhhcCCCcEEEEEEeecChhhHHHHHHhhhcCCcEEEEecCCCCCcccccccCcCCCCCccchhhhhhhcCCCCcceEE
Q 036516 614 FKDSMVGNKIIFREEIVKDGIGTTQVIQAFAETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEFSVLV 693 (709)
Q Consensus 614 ~~~~~~~~~v~y~e~~v~~g~~~~~~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~SvLv 693 (709)
+..... .+. ..+..| +..+.|.+..+++||+++|+ |+.+| =+|-+.+-+... .+++|||
T Consensus 208 l~~~~~--~~~---~~~~~g-~~~~~i~~~a~~~dliV~G~----------~~~~~----~~Gs~~~~vl~~-~~~pvlv 266 (268)
T 3ab8_A 208 LRDHGV--EAS---ALVLGG-DAADHLLRLQGPGDLLALGA----------PVRRL----VFGSTAERVIRN-AQGPVLT 266 (268)
T ss_dssp HHHTTC--CEE---EEEECS-CHHHHHHHHCCTTEEEEEEC----------CCSCC----SSCCHHHHHHHH-CSSCEEE
T ss_pred HHHcCC--ceE---EEEeCC-ChHHHHHHHHHhCCEEEECC----------ccccc----EeccHHHHHHhc-CCCCEEE
Confidence 332211 332 222344 35566666665569999998 33333 367777766653 4568888
Q ss_pred Ee
Q 036516 694 VQ 695 (709)
Q Consensus 694 vq 695 (709)
|.
T Consensus 267 v~ 268 (268)
T 3ab8_A 267 AR 268 (268)
T ss_dssp EC
T ss_pred eC
Confidence 73
No 7
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=99.33 E-value=4.1e-12 Score=117.54 Aligned_cols=138 Identities=13% Similarity=0.116 Sum_probs=94.8
Q ss_pred ceeEEEeccCCC--hHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCccccccCccccccchhchhHHHHHHHHHHHhc-
Q 036516 385 LRILVCIHKEQN--VNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLKPHHQQTKSEAASSTQLINAFTQFQRCY- 461 (709)
Q Consensus 385 ~riLv~v~~~~~--~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~- 461 (709)
-|||+|++++++ ...+++.+..++. ....+++++|+++.+....+.........+......++..+.++++.+..
T Consensus 2 k~ILv~vD~s~~~~s~~al~~a~~la~--~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 79 (143)
T 3fdx_A 2 NAILVPIDISDKEFTERIISHVESEAR--IDDAEVHFLTVIPSLPYYASLGMAYTAELPGMDELREGSETQLKEIAKKFS 79 (143)
T ss_dssp CEEEEECCTTCSSCCTTHHHHHHHHHH--HHTCEEEEEEEECC----------------CHHHHHHHHHHHHHHHHTTSC
T ss_pred CEEEEEecCChHhhHHHHHHHHHHHHH--hcCCeEEEEEEecCCcccccccccccchhhhHHHHHHHHHHHHHHHHHHcC
Confidence 489999999999 9999999888873 34579999999987532211111000000112233455666677665433
Q ss_pred CcceEEEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEE
Q 036516 462 YGHVVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGIL 534 (709)
Q Consensus 462 ~~~v~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIl 534 (709)
..++.++..+..+ +..+.|++.|+++++|+||||.|+ .+..+. .+|++.++|++++||||.|+
T Consensus 80 ~~~~~v~~~~~~g---~~~~~I~~~a~~~~~dliV~G~~~-~~~~~~------~~Gs~~~~v~~~~~~pVlvv 142 (143)
T 3fdx_A 80 IPEDRMHFHVAEG---SPKDKILALAKSLPADLVIIASHR-PDITTY------LLGSNAAAVVRHAECSVLVV 142 (143)
T ss_dssp CCGGGEEEEEEES---CHHHHHHHHHHHTTCSEEEEESSC-TTCCSC------SSCHHHHHHHHHCSSEEEEE
T ss_pred CCCCceEEEEEec---ChHHHHHHHHHHhCCCEEEEeCCC-CCCeee------eeccHHHHHHHhCCCCEEEe
Confidence 2345667766666 899999999999999999999995 443332 58999999999999999875
No 8
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=99.28 E-value=2.8e-11 Score=114.49 Aligned_cols=138 Identities=13% Similarity=0.166 Sum_probs=95.1
Q ss_pred ceeEEEeccCCChHHHHHHHHhhCCCCCCCceEEEEEeeeccC----CCcccc-----c-cCc---c--ccccchhchhH
Q 036516 385 LRILVCIHKEQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKG----SVTAFL-----K-PHH---Q--QTKSEAASSTQ 449 (709)
Q Consensus 385 ~riLv~v~~~~~~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~----~~~~~~-----~-~~~---~--~~~~~~~~~~~ 449 (709)
-|||+|++.+++...+++.+..++. ....+++++|+++... ...+.. . +.. . ..+......++
T Consensus 6 ~~ILv~vD~s~~s~~al~~a~~la~--~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (162)
T 1mjh_A 6 KKILYPTDFSETAEIALKHVKAFKT--LKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKN 83 (162)
T ss_dssp CEEEEECCSCHHHHHHHHHHHHTCC--SSCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHh--hcCCeEEEEEEecCccccccccccccccccccccchhhhHHHHHHHHHHHHHH
Confidence 4899999999999999999999984 3457999999998541 100110 0 110 0 00011122233
Q ss_pred HHHHHHHHHHhcCcceEEEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCc
Q 036516 450 LINAFTQFQRCYYGHVVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPC 529 (709)
Q Consensus 450 i~~af~~~~~~~~~~v~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apC 529 (709)
.++.+.+..+ ..+++++..+..+ +..+.|++.|+++++|+||||.|++.+..+. .+|++.++|++++||
T Consensus 84 ~l~~~~~~~~--~~g~~~~~~v~~G---~~~~~I~~~a~~~~~dlIV~G~~g~~~~~~~------~~GSv~~~vl~~~~~ 152 (162)
T 1mjh_A 84 KMENIKKELE--DVGFKVKDIIVVG---IPHEEIVKIAEDEGVDIIIMGSHGKTNLKEI------LLGSVTENVIKKSNK 152 (162)
T ss_dssp HHHHHHHHHH--HTTCEEEEEEEEE---CHHHHHHHHHHHTTCSEEEEESCCSSCCTTC------SSCHHHHHHHHHCCS
T ss_pred HHHHHHHHHH--HcCCceEEEEcCC---CHHHHHHHHHHHcCCCEEEEcCCCCCCccce------EecchHHHHHHhCCC
Confidence 3333333222 2457777766666 8999999999999999999999988765443 489999999999999
Q ss_pred cEEEEE
Q 036516 530 SVGILV 535 (709)
Q Consensus 530 sVgIlv 535 (709)
||.|+.
T Consensus 153 pVlvv~ 158 (162)
T 1mjh_A 153 PVLVVK 158 (162)
T ss_dssp CEEEEC
T ss_pred CEEEEe
Confidence 998864
No 9
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=99.27 E-value=1.1e-11 Score=115.12 Aligned_cols=136 Identities=13% Similarity=0.108 Sum_probs=97.0
Q ss_pred ceeEEEeccCCChHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCcccc--ccCccccccchhchhHHHHHHHHHHHhcC
Q 036516 385 LRILVCIHKEQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFL--KPHHQQTKSEAASSTQLINAFTQFQRCYY 462 (709)
Q Consensus 385 ~riLv~v~~~~~~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~~--~~~~~~~~~~~~~~~~i~~af~~~~~~~~ 462 (709)
-|||||++.+++...+++.+..++. ....+++++|+++.+....... ...+. .+......++.++.+.+..+ .
T Consensus 6 ~~ILv~~D~s~~s~~al~~A~~la~--~~~a~l~ll~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~--~ 80 (146)
T 3s3t_A 6 TNILVPVDSSDAAQAAFTEAVNIAQ--RHQANLTALYVVDDSAYHTPALDPVLSEL-LDAEAAHAKDAMRQRQQFVA--T 80 (146)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHH--HHTCEEEEEEEEECCCCCCGGGHHHHHHH-HHHHHHHHHHHHHHHHHHHT--T
T ss_pred ceEEEEcCCCHHHHHHHHHHHHHHH--hcCCEEEEEEEecCccccccccccccHHH-HHHHHHHHHHHHHHHHHHHH--h
Confidence 4899999999999999999988884 3357999999998764321110 00000 00122233344444444322 3
Q ss_pred cce-EEEEEEEEccCCChhHHHHH-HHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEE
Q 036516 463 GHV-VVQHFTTIAPYATMHDDVCT-LALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGIL 534 (709)
Q Consensus 463 ~~v-~v~~~~~vs~~~~~~~dI~~-~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIl 534 (709)
.++ .++..+..+ +..+.|++ .|++.++||||||.|++.+..+. .+|++.++|++++||||.|+
T Consensus 81 ~g~~~~~~~~~~g---~~~~~I~~~~a~~~~~dliV~G~~~~~~~~~~------~~Gs~~~~vl~~~~~pVlvV 145 (146)
T 3s3t_A 81 TSAPNLKTEISYG---IPKHTIEDYAKQHPEIDLIVLGATGTNSPHRV------AVGSTTSYVVDHAPCNVIVI 145 (146)
T ss_dssp SSCCCCEEEEEEE---CHHHHHHHHHHHSTTCCEEEEESCCSSCTTTC------SSCHHHHHHHHHCSSEEEEE
T ss_pred cCCcceEEEEecC---ChHHHHHHHHHhhcCCCEEEECCCCCCCcceE------EEcchHHHHhccCCCCEEEe
Confidence 457 777777777 89999999 99999999999999988765543 48999999999999999875
No 10
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=99.25 E-value=9.2e-12 Score=115.61 Aligned_cols=135 Identities=11% Similarity=0.094 Sum_probs=95.1
Q ss_pred eeEEEeccCCChHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCccc--cccCccc---cccchhchhHHHHHHHHHHHh
Q 036516 386 RILVCIHKEQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAF--LKPHHQQ---TKSEAASSTQLINAFTQFQRC 460 (709)
Q Consensus 386 riLv~v~~~~~~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~--~~~~~~~---~~~~~~~~~~i~~af~~~~~~ 460 (709)
|||+|++.+++...+++.+..++. ....+++++|+++.+....+. ..+.... .+......++.++.+.+..+.
T Consensus 4 ~ILv~vD~s~~s~~al~~A~~la~--~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 81 (147)
T 3hgm_A 4 RIMVPVDGSKGAVKALEKGVGLQQ--LTGAELYILCVFKHHSLLEASLSMARPEQLDIPDDALKDYATEIAVQAKTRATE 81 (147)
T ss_dssp EEEEECCSBHHHHHHHHHHHHHHH--HHCCEEEEEEEECCHHHHHHTBSSCCCGGGCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCHHHHHHHHHHHHHHH--hcCCEEEEEEEecCcccccccccccChhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 799999999999999999988874 335799999999865311000 0000000 011223445555555554332
Q ss_pred cCcceEE---EEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEE
Q 036516 461 YYGHVVV---QHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGI 533 (709)
Q Consensus 461 ~~~~v~v---~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgI 533 (709)
.++++ +..+..+ +..+.|++.|+++++||||||.|++.+..+. .+|++.++|++++||||.|
T Consensus 82 --~g~~~~~~~~~~~~g---~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~------~~Gs~~~~vl~~~~~pVlv 146 (147)
T 3hgm_A 82 --LGVPADKVRAFVKGG---RPSRTIVRFARKRECDLVVIGAQGTNGDKSL------LLGSVAQRVAGSAHCPVLV 146 (147)
T ss_dssp --TTCCGGGEEEEEEES---CHHHHHHHHHHHTTCSEEEECSSCTTCCSCC------CCCHHHHHHHHHCSSCEEE
T ss_pred --cCCCccceEEEEecC---CHHHHHHHHHHHhCCCEEEEeCCCCccccce------eeccHHHHHHhhCCCCEEE
Confidence 34555 6655666 8999999999999999999999998665443 4899999999999999976
No 11
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=99.24 E-value=4.6e-11 Score=114.05 Aligned_cols=140 Identities=11% Similarity=0.084 Sum_probs=94.0
Q ss_pred ceeEEEeccCCChHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCccc-ccc---------CccccccchhchhHHHHHH
Q 036516 385 LRILVCIHKEQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAF-LKP---------HHQQTKSEAASSTQLINAF 454 (709)
Q Consensus 385 ~riLv~v~~~~~~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~-~~~---------~~~~~~~~~~~~~~i~~af 454 (709)
-|||||++.+++...+++.+..++. ....+++++|+++........ ..+ .+...+......++.++.+
T Consensus 6 ~~ILv~vD~s~~s~~al~~A~~la~--~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 83 (170)
T 2dum_A 6 RKVLFPTDFSEGAYRAVEVFEKRNK--MEVGEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIKEKLKEEASRKLQEK 83 (170)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHCC--SCCSEEEEEEEEETTGGGCCC------------CCTTSHHHHHHHHHHHHHHH
T ss_pred ceEEEEecCCHHHHHHHHHHHHHHH--hcCCEEEEEEEecCccccccccccccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999984 445799999999854211000 000 0000001112233344443
Q ss_pred HHHHHhcCcceEEEE--EEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEE
Q 036516 455 TQFQRCYYGHVVVQH--FTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVG 532 (709)
Q Consensus 455 ~~~~~~~~~~v~v~~--~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVg 532 (709)
.+..+. .++.++. .+..+ +..+.|++.|+++++||||||.|++.+..+. .+|++.++|++++||||.
T Consensus 84 ~~~~~~--~g~~~~~~~~~~~g---~~~~~I~~~a~~~~~DlIV~G~~g~~~~~~~------~~Gsv~~~vl~~~~~PVl 152 (170)
T 2dum_A 84 AEEVKR--AFRAKNVRTIIRFG---IPWDEIVKVAEEENVSLIILPSRGKLSLSHE------FLGSTVMRVLRKTKKPVL 152 (170)
T ss_dssp HHHHHH--HTTCSEEEEEEEEE---CHHHHHHHHHHHTTCSEEEEESCCCCC--TT------CCCHHHHHHHHHCSSCEE
T ss_pred HHHHHH--cCCceeeeeEEecC---ChHHHHHHHHHHcCCCEEEECCCCCCccccc------eechHHHHHHHhCCCCEE
Confidence 333222 2455555 55555 8999999999999999999999987654433 489999999999999998
Q ss_pred EEEec
Q 036516 533 ILVHR 537 (709)
Q Consensus 533 Ilvdr 537 (709)
|+..+
T Consensus 153 vv~~~ 157 (170)
T 2dum_A 153 IIKEV 157 (170)
T ss_dssp EECCC
T ss_pred EEccC
Confidence 87544
No 12
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=99.23 E-value=1.8e-11 Score=115.44 Aligned_cols=130 Identities=13% Similarity=0.187 Sum_probs=94.1
Q ss_pred cceeEEEecc-CCChHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCccccccCccccccchhchhHHHHHHHHHHHhcC
Q 036516 384 SLRILVCIHK-EQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLKPHHQQTKSEAASSTQLINAFTQFQRCYY 462 (709)
Q Consensus 384 e~riLv~v~~-~~~~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~ 462 (709)
--|||||++. +++...+++.+..++.. ...+++++|+++.+... . +......++.++.+.+..+.
T Consensus 24 ~~~ILv~vD~~s~~s~~al~~A~~la~~--~~a~l~llhV~~~~~~~------~----~~~~~~~~~~l~~~~~~~~~-- 89 (155)
T 3dlo_A 24 YMPIVVAVDKKSDRAERVLRFAAEEARL--RGVPVYVVHSLPGGGRT------K----DEDIIEAKETLSWAVSIIRK-- 89 (155)
T ss_dssp CCCEEEECCSSSHHHHHHHHHHHHHHHH--HTCCEEEEEEECCSTTS------C----HHHHHHHHHHHHHHHHHHHH--
T ss_pred cCeEEEEECCCCHHHHHHHHHHHHHHHh--cCCEEEEEEEEcCCCcc------c----HHHHHHHHHHHHHHHHHHHh--
Confidence 3589999999 99999999999888843 34689999999854321 0 11223344455544444332
Q ss_pred cceEEEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEE
Q 036516 463 GHVVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGIL 534 (709)
Q Consensus 463 ~~v~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIl 534 (709)
.++.++..+.+. ..+..+.|++.|++.++||||||.|++.+..+. .+|++.++|++++||||.|+
T Consensus 90 ~g~~~~~~~~v~-~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~------~lGSv~~~vl~~a~~PVLvV 154 (155)
T 3dlo_A 90 EGAEGEEHLLVR-GKEPPDDIVDFADEVDAIAIVIGIRKRSPTGKL------IFGSVARDVILKANKPVICI 154 (155)
T ss_dssp TTCCEEEEEEES-SSCHHHHHHHHHHHTTCSEEEEECCEECTTSCE------ECCHHHHHHHHHCSSCEEEE
T ss_pred cCCCceEEEEec-CCCHHHHHHHHHHHcCCCEEEECCCCCCCCCCE------EeccHHHHHHHhCCCCEEEe
Confidence 344554433331 248999999999999999999999998765543 48999999999999999875
No 13
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=99.21 E-value=2.3e-11 Score=115.73 Aligned_cols=137 Identities=11% Similarity=0.068 Sum_probs=92.5
Q ss_pred cceeEEEeccCCChHHHHHHHHhhCCCCCCCceEEEE--EeeeccCCCccccc-cCccccccchhchhHHHHHHHHHHHh
Q 036516 384 SLRILVCIHKEQNVNPLISLLEVSNPTRNSPIAAFVL--QLMELKGSVTAFLK-PHHQQTKSEAASSTQLINAFTQFQRC 460 (709)
Q Consensus 384 e~riLv~v~~~~~~~~li~l~~~~~~~~~~~~~v~~L--hlvel~~~~~~~~~-~~~~~~~~~~~~~~~i~~af~~~~~~ 460 (709)
--|||||++.+++...+++.+..++. ...+++++ |+++.+....+... ..+.. +......++.++.+.+..+
T Consensus 17 ~~~ILv~vD~s~~s~~al~~A~~lA~---~~a~l~ll~a~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~- 91 (163)
T 1tq8_A 17 YKTVVVGTDGSDSSMRAVDRAAQIAG---ADAKLIIASAYLPQHEDARAADILKDESYK-VTGTAPIYEILHDAKERAH- 91 (163)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHT---TTSEEEEEEECCC---------------------CCTHHHHHHHHHHHHH-
T ss_pred CCEEEEEcCCCHHHHHHHHHHHHHhC---CCCEEEEEEeeeccCcccccccccccHHHH-HHHHHHHHHHHHHHHHHHH-
Confidence 46899999999999999999998885 45789999 88875432011100 00000 0122334455555444332
Q ss_pred cCcceE-EEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEEE
Q 036516 461 YYGHVV-VQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGILV 535 (709)
Q Consensus 461 ~~~~v~-v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIlv 535 (709)
..+++ ++..+..+ +..+.|++.|++.++||||||.|++.+..+ ..+|++.++|++++||||.|+.
T Consensus 92 -~~gv~~v~~~v~~G---~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~------~~lGSva~~vl~~a~~PVlvV~ 157 (163)
T 1tq8_A 92 -NAGAKNVEERPIVG---APVDALVNLADEEKADLLVVGNVGLSTIAG------RLLGSVPANVSRRAKVDVLIVH 157 (163)
T ss_dssp -TTTCCEEEEEEECS---SHHHHHHHHHHHTTCSEEEEECCCCCSHHH------HHTBBHHHHHHHHTTCEEEEEC
T ss_pred -HcCCCeEEEEEecC---CHHHHHHHHHHhcCCCEEEECCCCCCcccc------eeeccHHHHHHHhCCCCEEEEe
Confidence 24566 77666555 899999999999999999999998765432 2589999999999999998864
No 14
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=99.20 E-value=2.7e-11 Score=111.33 Aligned_cols=132 Identities=10% Similarity=0.077 Sum_probs=88.3
Q ss_pred eeEEEeccCCChHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCccccccCccccccchhchhHHHHHHHHHHHhcCcce
Q 036516 386 RILVCIHKEQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLKPHHQQTKSEAASSTQLINAFTQFQRCYYGHV 465 (709)
Q Consensus 386 riLv~v~~~~~~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~~v 465 (709)
|||+|++++++...+++.+..++. ....+++++|+++.......-..+.+. .....++..+.++++.+. .++
T Consensus 4 ~ILv~~D~s~~s~~al~~a~~la~--~~~a~l~ll~v~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~--~g~ 75 (137)
T 2z08_A 4 TILLAYDGSEHARRAAEVAKAEAE--AHGARLIVVHAYEPVPDYLGEPFFEEA----LRRRLERAEGVLEEARAL--TGV 75 (137)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHHH--HHTCEEEEEEEECC------------------CHHHHHHHHHHHHHHHH--HCC
T ss_pred eEEEEeCCCHHHHHHHHHHHHHHh--hcCCEEEEEEEecCCCccccccchHHH----HHHHHHHHHHHHHHHHHH--cCC
Confidence 799999999999999999988873 335799999998732110000000000 011112333344444332 234
Q ss_pred -EEEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEE
Q 036516 466 -VVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGIL 534 (709)
Q Consensus 466 -~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIl 534 (709)
+++..+..+ +..+.|++.|+++++|+||||.|++.+..+. .+|++.++|++++||||.|+
T Consensus 76 ~~~~~~~~~g---~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~------~~Gs~~~~vl~~~~~pVlvv 136 (137)
T 2z08_A 76 PKEDALLLEG---VPAEAILQAARAEKADLIVMGTRGLGALGSL------FLGSQSQRVVAEAPCPVLLV 136 (137)
T ss_dssp CGGGEEEEES---SHHHHHHHHHHHTTCSEEEEESSCTTCCSCS------SSCHHHHHHHHHCSSCEEEE
T ss_pred CccEEEEEec---CHHHHHHHHHHHcCCCEEEECCCCCchhhhh------hhccHHHHHHhcCCCCEEEe
Confidence 444444444 8999999999999999999999987655443 48999999999999999875
No 15
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=99.19 E-value=3.5e-11 Score=112.24 Aligned_cols=137 Identities=12% Similarity=0.153 Sum_probs=87.2
Q ss_pred ceeEEEeccCCChHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCcccc---ccCccccccchhchhHHHHHHHHHHHhc
Q 036516 385 LRILVCIHKEQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFL---KPHHQQTKSEAASSTQLINAFTQFQRCY 461 (709)
Q Consensus 385 ~riLv~v~~~~~~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~~---~~~~~~~~~~~~~~~~i~~af~~~~~~~ 461 (709)
-|||||++.+++...+++.+..++.. ...+++++|+++......+.. .+... .+......++..+.++++.+..
T Consensus 7 ~~ILv~vD~s~~s~~al~~a~~la~~--~~a~l~ll~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~ 83 (150)
T 3tnj_A 7 HHILLAVDFSSEDSQVVQKVRNLASQ--IGARLSLIHVLDNIPMPDTPYGTAIPLDT-ETTYDAMLDVEKQKLSQIGNTL 83 (150)
T ss_dssp SEEEEECCCSTTHHHHHHHHHHHHHH--HTCEEEEEEEEC--------CTTCCCSSS-CCCHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhh--cCCEEEEEEEEcCccccccccccccCcCH-HHHHHHHHHHHHHHHHHHHHHc
Confidence 48999999999999999999888843 457999999998643210000 00000 0011222334445555554332
Q ss_pred CcceE-EEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEEEe
Q 036516 462 YGHVV-VQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGILVH 536 (709)
Q Consensus 462 ~~~v~-v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIlvd 536 (709)
++. ++..+..+ +..+.|++.|+++++|+||||.|++.+.. . .+|++.++|++++||||.|+..
T Consensus 84 --~~~~~~~~~~~g---~~~~~I~~~a~~~~~dliV~G~~~~~~~~-~------~~Gs~~~~vl~~~~~pVlvv~~ 147 (150)
T 3tnj_A 84 --GIDPAHRWLVWG---EPREEIIRIAEQENVDLIVVGSHGRHGLA-L------LLGSTANSVLHYAKCDVLAVRL 147 (150)
T ss_dssp --TCCGGGEEEEES---CHHHHHHHHHHHTTCSEEEEEEC---------------CCCHHHHHHHHCSSEEEEEEC
T ss_pred --CCCcceEEEecC---CHHHHHHHHHHHcCCCEEEEecCCCCCcC-e------EecchHHHHHHhCCCCEEEEeC
Confidence 233 23334444 89999999999999999999999876544 3 4899999999999999988754
No 16
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=99.17 E-value=1.3e-10 Score=111.43 Aligned_cols=143 Identities=11% Similarity=0.127 Sum_probs=89.4
Q ss_pred ceeEEEeccCC---------ChHHHHHHHHhhCCCC-CCCceEEEEEeeeccCCCcc----ccc-cCccc--cccchhch
Q 036516 385 LRILVCIHKEQ---------NVNPLISLLEVSNPTR-NSPIAAFVLQLMELKGSVTA----FLK-PHHQQ--TKSEAASS 447 (709)
Q Consensus 385 ~riLv~v~~~~---------~~~~li~l~~~~~~~~-~~~~~v~~Lhlvel~~~~~~----~~~-~~~~~--~~~~~~~~ 447 (709)
-|||||++.++ ....+++.+..++..+ ....+++++|+++....... ... +.... .+......
T Consensus 6 ~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (175)
T 2gm3_A 6 TKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASPEDFRDMRQSNKAKG 85 (175)
T ss_dssp EEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC----------CCCCSHHHHHHHTTSHHHHH
T ss_pred cEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeecccccccccccccCCHHHHHHHHHHHHHHH
Confidence 58999999999 8888999988865322 24579999999864321110 000 00000 00111122
Q ss_pred hHHHHHHHHHHHhcCcceEEEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcC
Q 036516 448 TQLINAFTQFQRCYYGHVVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKA 527 (709)
Q Consensus 448 ~~i~~af~~~~~~~~~~v~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~a 527 (709)
++.++.+.+..+ ..++.++..+..+ +..+.|++.|+++++||||||.|++.+..+. .+|++.++|++++
T Consensus 86 ~~~l~~~~~~~~--~~g~~~~~~v~~G---~~~~~I~~~a~~~~~DLIVmG~~g~~~~~~~------~~Gsva~~vl~~a 154 (175)
T 2gm3_A 86 LHLLEFFVNKCH--EIGVGCEAWIKTG---DPKDVICQEVKRVRPDFLVVGSRGLGRFQKV------FVGTVSAFCVKHA 154 (175)
T ss_dssp HHHHHHHHHHHH--HHTCEEEEEEEES---CHHHHHHHHHHHHCCSEEEEEECCCC--------------CHHHHHHHHC
T ss_pred HHHHHHHHHHHH--HCCCceEEEEecC---CHHHHHHHHHHHhCCCEEEEeCCCCChhhhh------hcCchHHHHHhCC
Confidence 334444433222 2357777666655 8999999999999999999999988655443 4899999999999
Q ss_pred CccEEEEEecC
Q 036516 528 PCSVGILVHRG 538 (709)
Q Consensus 528 pCsVgIlvdrg 538 (709)
||||.|+....
T Consensus 155 ~~pVlvv~~~~ 165 (175)
T 2gm3_A 155 ECPVMTIKRNA 165 (175)
T ss_dssp SSCEEEEECCG
T ss_pred CCCEEEEcCCc
Confidence 99999876543
No 17
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=99.16 E-value=3.7e-11 Score=112.95 Aligned_cols=137 Identities=10% Similarity=0.094 Sum_probs=94.3
Q ss_pred cceeEEEec--cCCChHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCccccccCccccccchhchhHHHHHHHHHHHhc
Q 036516 384 SLRILVCIH--KEQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLKPHHQQTKSEAASSTQLINAFTQFQRCY 461 (709)
Q Consensus 384 e~riLv~v~--~~~~~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~ 461 (709)
--|||+|++ ++++...+++.+..++.. .+.+++++|+++.+..........+. .+......++.++.+.+..+.
T Consensus 15 ~~~ILv~vD~~~s~~s~~al~~a~~la~~--~~a~l~ll~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~- 90 (156)
T 3fg9_A 15 YRRILLTVDEDDNTSSERAFRYATTLAHD--YDVPLGICSVLESEDINIFDSLTPSK-IQAKRKHVEDVVAEYVQLAEQ- 90 (156)
T ss_dssp CC-EEEECCSCCCHHHHHHHHHHHHHHHH--HTCCEEEEEEECCCCTTCCCSSHHHH-HHHHHHHHHHHHHHHHHHHHH-
T ss_pred CceEEEEECCCCCHHHHHHHHHHHHHHHh--cCCEEEEEEEEeCCCccccccCCHHH-HHHHHHHHHHHHHHHHHHHHH-
Confidence 358999999 999999999999888743 35789999999865321100000000 001222334444444443322
Q ss_pred Ccce-EEEEEEEEccCCChhHHHHHH-HhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEE
Q 036516 462 YGHV-VVQHFTTIAPYATMHDDVCTL-ALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGIL 534 (709)
Q Consensus 462 ~~~v-~v~~~~~vs~~~~~~~dI~~~-A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIl 534 (709)
.++ .++..+..+ .+..+.|++. |+++++||||||.|++.+.+ . .+|++.++|++++||||.|+
T Consensus 91 -~g~~~~~~~v~~~--g~~~~~I~~~~a~~~~~DlIV~G~~g~~~~~-~------~~Gs~~~~vl~~a~~PVlvV 155 (156)
T 3fg9_A 91 -RGVNQVEPLVYEG--GDVDDVILEQVIPEFKPDLLVTGADTEFPHS-K------IAGAIGPRLARKAPISVIVV 155 (156)
T ss_dssp -HTCSSEEEEEEEC--SCHHHHHHHTHHHHHCCSEEEEETTCCCTTS-S------SCSCHHHHHHHHCSSEEEEE
T ss_pred -cCCCceEEEEEeC--CCHHHHHHHHHHHhcCCCEEEECCCCCCccc-e------eecchHHHHHHhCCCCEEEe
Confidence 345 467766762 3899999999 99999999999999886643 2 48999999999999999875
No 18
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=99.14 E-value=4.8e-11 Score=109.60 Aligned_cols=133 Identities=11% Similarity=0.030 Sum_probs=93.1
Q ss_pred eeEEEeccCCChHHHHHHHHhhC-CCCCCCceEEEEEeeeccCCCccccccCccccccch-hchhHHHHHHHHHHHhcCc
Q 036516 386 RILVCIHKEQNVNPLISLLEVSN-PTRNSPIAAFVLQLMELKGSVTAFLKPHHQQTKSEA-ASSTQLINAFTQFQRCYYG 463 (709)
Q Consensus 386 riLv~v~~~~~~~~li~l~~~~~-~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~-~~~~~i~~af~~~~~~~~~ 463 (709)
|||+|++.+++...+++.+..++ ... ..+++++|+++.+..............+... ...++.++.+.+..+ ..
T Consensus 3 ~ILv~~D~s~~s~~al~~a~~la~~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~ 78 (138)
T 3idf_A 3 KLLFAIDDTEACERAAQYILDMFGKDA--DCTLTLIHVKPEFMLYGEAVLAAYDEIEMKEEEKAKLLTQKFSTFFT--EK 78 (138)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHHTTCT--TEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TT
T ss_pred eEEEEeCCCHHHHHHHHHHHHHhccCC--CCEEEEEEEecCCCcccccccCcHHHHHHHHHHHHHHHHHHHHHHHH--HC
Confidence 79999999999999999998888 443 4799999999865432110000000000111 333444444444332 35
Q ss_pred ceEEEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEE
Q 036516 464 HVVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGIL 534 (709)
Q Consensus 464 ~v~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIl 534 (709)
+++++..+..+ +..+.|++.|+ ++||||||.|++.+..+. . |++.++|++++||||.|+
T Consensus 79 g~~~~~~v~~g---~~~~~I~~~a~--~~dliV~G~~~~~~~~~~------~-Gs~~~~vl~~~~~pVlvv 137 (138)
T 3idf_A 79 GINPFVVIKEG---EPVEMVLEEAK--DYNLLIIGSSENSFLNKI------F-ASHQDDFIQKAPIPVLIV 137 (138)
T ss_dssp TCCCEEEEEES---CHHHHHHHHHT--TCSEEEEECCTTSTTSSC------C-CCTTCHHHHHCSSCEEEE
T ss_pred CCCeEEEEecC---ChHHHHHHHHh--cCCEEEEeCCCcchHHHH------h-CcHHHHHHhcCCCCEEEe
Confidence 67777777766 89999999998 999999999987665432 4 888999999999999875
No 19
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=99.08 E-value=2.4e-10 Score=105.31 Aligned_cols=134 Identities=10% Similarity=0.064 Sum_probs=88.1
Q ss_pred eeEEEeccCCChHHHHHHHHhhCCCCCCCceEEEEEeeec-cCCCccccccCccccccchhchhHHHHHHHHHHHhcCcc
Q 036516 386 RILVCIHKEQNVNPLISLLEVSNPTRNSPIAAFVLQLMEL-KGSVTAFLKPHHQQTKSEAASSTQLINAFTQFQRCYYGH 464 (709)
Q Consensus 386 riLv~v~~~~~~~~li~l~~~~~~~~~~~~~v~~Lhlvel-~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~~ 464 (709)
|||+|++.+++...+++.+..++. ..+.+++++|+.+- +...... ...... +......++..+.++++.+.. +
T Consensus 4 ~ILv~~D~s~~s~~al~~a~~la~--~~~a~l~ll~v~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~l~~~~~~~--~ 77 (141)
T 1jmv_A 4 HILVAVDLSEESPILLKKAVGIAK--RHDAKLSIIHVDVNFSDLYTGL-IDVNMS-SMQDRISTETQKALLDLAESV--D 77 (141)
T ss_dssp EEEEEECCSTTHHHHHHHHHHHHH--HHTCEEEEEEEEECCGGGCCCC-EEHHHH-HHTTCCCCHHHHHHHHHHHHS--S
T ss_pred eEEEEecCchhhHHHHHHHHHHHH--hcCCEEEEEEEecCchhhhccc-cccchH-HHHHHHHHHHHHHHHHHHHHc--C
Confidence 799999999999999999988874 33479999999842 3211110 000000 000111233344444444332 3
Q ss_pred eEE-EEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEEEec
Q 036516 465 VVV-QHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGILVHR 537 (709)
Q Consensus 465 v~v-~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIlvdr 537 (709)
+++ +..+..+ +..+.|++.|++.++|+||||.| +.+.+ .+|++.++|++++||||.|+..+
T Consensus 78 ~~~~~~~~~~g---~~~~~I~~~a~~~~~dliV~G~~-~~~~~--------~lgs~~~~vl~~~~~pVlvv~~~ 139 (141)
T 1jmv_A 78 YPISEKLSGSG---DLGQVLSDAIEQYDVDLLVTGHH-QDFWS--------KLMSSTRQVMNTIKIDMLVVPLR 139 (141)
T ss_dssp SCCCCEEEEEE---CHHHHHHHHHHHTTCCEEEEEEC-CCCHH--------HHHHHHHHHHTTCCSEEEEEECC
T ss_pred CCceEEEEecC---CHHHHHHHHHHhcCCCEEEEeCC-Cchhh--------hhcchHHHHHhcCCCCEEEeeCC
Confidence 333 3344445 89999999999999999999998 54321 16899999999999999887543
No 20
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=98.96 E-value=1.1e-09 Score=100.58 Aligned_cols=128 Identities=9% Similarity=-0.003 Sum_probs=83.1
Q ss_pred ceeEEEeccCCChHHHHHHHHhhCCCCCCCceEEEEEee-ec-cCCC-ccc-cccCccc-cccchhchhHHHHHHHHHHH
Q 036516 385 LRILVCIHKEQNVNPLISLLEVSNPTRNSPIAAFVLQLM-EL-KGSV-TAF-LKPHHQQ-TKSEAASSTQLINAFTQFQR 459 (709)
Q Consensus 385 ~riLv~v~~~~~~~~li~l~~~~~~~~~~~~~v~~Lhlv-el-~~~~-~~~-~~~~~~~-~~~~~~~~~~i~~af~~~~~ 459 (709)
-|||+|++++++...+++.+..++. ..+.+++++|++ +. +... ... ..+.... .+......++.++.++.+.
T Consensus 5 ~~ILv~~D~s~~s~~al~~a~~la~--~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 81 (138)
T 1q77_A 5 KVLLVLTDAYSDCEKAITYAVNFSE--KLGAELDILAVLEDVYNLERANVTFGLPFPPEIKEESKKRIERRLREVWEKL- 81 (138)
T ss_dssp EEEEEEESTTCCCHHHHHHHHHHHT--TTCCEEEEEEECHHHHHHHHHHHHHCCCCCTHHHHHHHHHHHHHHHHHHHHH-
T ss_pred cEEEEEccCCHhHHHHHHHHHHHHH--HcCCeEEEEEEecccccccccccccCCCCChHHHHHHHHHHHHHHHHHHHHh-
Confidence 4899999999999999999988884 445799999999 63 2100 000 0010000 0011122233333332210
Q ss_pred hcCcceEEEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEE
Q 036516 460 CYYGHVVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGIL 534 (709)
Q Consensus 460 ~~~~~v~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIl 534 (709)
....+ .++..+..+ +..+.|++.|+++++||||||.|++ ++.++|++++||||.|+
T Consensus 82 ~~~~~-~~~~~~~~g---~~~~~I~~~a~~~~~dliV~G~~g~---------------sv~~~vl~~a~~PVlvv 137 (138)
T 1q77_A 82 TGSTE-IPGVEYRIG---PLSEEVKKFVEGKGYELVVWACYPS---------------AYLCKVIDGLNLASLIV 137 (138)
T ss_dssp HSCCC-CCCEEEECS---CHHHHHHHHHTTSCCSEEEECSCCG---------------GGTHHHHHHSSSEEEEC
T ss_pred hccCC-cceEEEEcC---CHHHHHHHHHHhcCCCEEEEeCCCC---------------chHHHHHHhCCCceEee
Confidence 12233 555544444 8999999999999999999999865 45889999999999774
No 21
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=98.85 E-value=4e-09 Score=109.76 Aligned_cols=137 Identities=16% Similarity=0.078 Sum_probs=91.3
Q ss_pred cceeEEEeccCCC-------hHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCccccccCccccccchhchhHHHHHHHH
Q 036516 384 SLRILVCIHKEQN-------VNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLKPHHQQTKSEAASSTQLINAFTQ 456 (709)
Q Consensus 384 e~riLv~v~~~~~-------~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~ 456 (709)
.-|||+|++.+++ ...+++.+..++. ..+.+++++|+.+.+..... .+.. +......++..+.+++
T Consensus 134 ~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~--~~~a~l~ll~v~~~~~~~~~--~~~~---~~~~~~~~~~~~~l~~ 206 (290)
T 3mt0_A 134 GGKILAAVDVGNNDGEHRSLHAGIISHAYDIAG--LAKATLHVISAHPSPMLSSA--DPTF---QLSETIEARYREACRT 206 (290)
T ss_dssp TCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHH--HTTCEEEEEEEEC-----------CH---HHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCcchhhhHHHHHHHHHHHHHHH--HcCCeEEEEEEecCcccccc--Cchh---HHHHHHHHHHHHHHHH
Confidence 4689999999998 7888888887773 33479999999986533211 1100 0011112233344444
Q ss_pred HHHhcCcceE-EEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEEE
Q 036516 457 FQRCYYGHVV-VQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGILV 535 (709)
Q Consensus 457 ~~~~~~~~v~-v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIlv 535 (709)
+.+.. ++. ++..+..+ +..+.|++.|+++++||||||.|++.+..+. .+|++.++|++++||||.|+.
T Consensus 207 ~~~~~--g~~~~~~~v~~g---~~~~~I~~~a~~~~~dLiVmG~~g~~~~~~~------~~Gsv~~~vl~~~~~pVLvv~ 275 (290)
T 3mt0_A 207 FQAEY--GFSDEQLHIEEG---PADVLIPRTAQKLDAVVTVIGTVARTGLSGA------LIGNTAEVVLDTLESDVLVLK 275 (290)
T ss_dssp HHHHH--TCCTTTEEEEES---CHHHHHHHHHHHHTCSEEEEECCSSCCGGGC------CSCHHHHHHHTTCSSEEEEEC
T ss_pred HHHHc--CCCcceEEEecc---CHHHHHHHHHHhcCCCEEEECCCCCcCCcce------ecchHHHHHHhcCCCCEEEEC
Confidence 44332 232 23333444 8999999999999999999999998776554 489999999999999998875
Q ss_pred ecC
Q 036516 536 HRG 538 (709)
Q Consensus 536 drg 538 (709)
.++
T Consensus 276 ~~~ 278 (290)
T 3mt0_A 276 PDD 278 (290)
T ss_dssp CHH
T ss_pred CCC
Confidence 544
No 22
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=98.85 E-value=4.4e-09 Score=110.77 Aligned_cols=146 Identities=10% Similarity=0.056 Sum_probs=94.1
Q ss_pred cceeEEEeccCCC-------hHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCccccccCccccccchhchhHHHHHHHH
Q 036516 384 SLRILVCIHKEQN-------VNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLKPHHQQTKSEAASSTQLINAFTQ 456 (709)
Q Consensus 384 e~riLv~v~~~~~-------~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~ 456 (709)
.-|||+|++.++. ...+++.+..++.......+++++|+.+..........+.....+......++..+.+++
T Consensus 156 ~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 235 (319)
T 3olq_A 156 YGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKDPDVHLLSAYPVAPINIAIELPDFDPNLYNNALRGQHLIAMKE 235 (319)
T ss_dssp TCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEECCCSCSCCTTCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCcchhhhccCCcccHHHHHHHHHHHHHHHHHH
Confidence 4689999999885 366777776666322114689999999876433211011100000111222334445555
Q ss_pred HHHhcCcceEEEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEEEe
Q 036516 457 FQRCYYGHVVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGILVH 536 (709)
Q Consensus 457 ~~~~~~~~v~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIlvd 536 (709)
+.+.... ..++..+..+ +..+.|++.|+++++||||||.|++.+..+. .+|++.++|++++||||.|+..
T Consensus 236 ~~~~~~~-~~~~~~v~~g---~~~~~I~~~a~~~~~dLiV~G~~g~~~~~~~------~~Gsv~~~vl~~~~~pVLvv~~ 305 (319)
T 3olq_A 236 LRQKFSI-PEEKTHVKEG---LPEQVIPQVCEELNAGIVVLGILGRTGLSAA------FLGNTAEQLIDHIKCDLLAIKP 305 (319)
T ss_dssp HHHHTTC-CGGGEEEEES---CHHHHHHHHHHHTTEEEEEEECCSCCSTHHH------HHHHHHHHHHTTCCSEEEEECC
T ss_pred HHHHhCC-CcccEEEecC---CcHHHHHHHHHHhCCCEEEEeccCccCCccc------cccHHHHHHHhhCCCCEEEECC
Confidence 5443211 1222333334 8899999999999999999999998765443 5999999999999999999876
Q ss_pred cCC
Q 036516 537 RGQ 539 (709)
Q Consensus 537 rg~ 539 (709)
+++
T Consensus 306 ~~~ 308 (319)
T 3olq_A 306 DGF 308 (319)
T ss_dssp TTC
T ss_pred CCC
Confidence 665
No 23
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=98.70 E-value=2.3e-08 Score=104.10 Aligned_cols=121 Identities=11% Similarity=0.079 Sum_probs=90.8
Q ss_pred cceeEEEeccCCChHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCccccccCccccccchhchhHHHHHHHHHHHhcCc
Q 036516 384 SLRILVCIHKEQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLKPHHQQTKSEAASSTQLINAFTQFQRCYYG 463 (709)
Q Consensus 384 e~riLv~v~~~~~~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~ 463 (709)
.-|||+|++.++....+++.+..++. ..+..++++|+.+... .++.++.+.++.+. .
T Consensus 170 ~~~Ilv~~d~s~~s~~al~~a~~la~--~~~~~l~ll~v~~~~~-------------------~~~~l~~~~~~l~~--~ 226 (294)
T 3loq_A 170 FDRVLVAYDFSKWADRALEYAKFVVK--KTGGELHIIHVSEDGD-------------------KTADLRVMEEVIGA--E 226 (294)
T ss_dssp TSEEEEECCSSHHHHHHHHHHHHHHH--HHTCEEEEEEECSSSC-------------------CHHHHHHHHHHHHH--T
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHhh--hcCCEEEEEEEccCch-------------------HHHHHHHHHHHHHH--c
Confidence 57899999999999999999888873 3346899999986432 12223333333322 3
Q ss_pred ceEEEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEEEe
Q 036516 464 HVVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGILVH 536 (709)
Q Consensus 464 ~v~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIlvd 536 (709)
++.++..+.- .+..+.|++.|++.++||||||.+++.+..+. .+|++.++|++++||||.|+..
T Consensus 227 ~~~~~~~~~~---g~~~~~I~~~a~~~~~dLlV~G~~~~~~~~~~------~~Gs~~~~vl~~~~~pvLvv~~ 290 (294)
T 3loq_A 227 GIEVHVHIES---GTPHKAILAKREEINATTIFMGSRGAGSVMTM------ILGSTSESVIRRSPVPVFVCKR 290 (294)
T ss_dssp TCCEEEEEEC---SCHHHHHHHHHHHTTCSEEEEECCCCSCHHHH------HHHCHHHHHHHHCSSCEEEECS
T ss_pred CCcEEEEEec---CCHHHHHHHHHHhcCcCEEEEeCCCCCCccce------eeCcHHHHHHhcCCCCEEEECC
Confidence 4556665443 49999999999999999999999988654433 5899999999999999988643
No 24
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=98.57 E-value=1.1e-07 Score=99.83 Aligned_cols=134 Identities=11% Similarity=0.120 Sum_probs=89.6
Q ss_pred cceeEEEeccCCChHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCccccccCccccccchhchhH-HHHHHHHHHHhcC
Q 036516 384 SLRILVCIHKEQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLKPHHQQTKSEAASSTQ-LINAFTQFQRCYY 462 (709)
Q Consensus 384 e~riLv~v~~~~~~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~-i~~af~~~~~~~~ 462 (709)
.-+||+|++.++....+++.+..++.. ....++++|+.+..... +. +.. ..+......++ +.+.++.+.+. .
T Consensus 171 ~~~Ilv~~D~s~~s~~al~~a~~la~~--~~a~l~ll~v~~~~~~~-~~--~~~-~~~~~~~~~~~~l~~~~~~~~~~-~ 243 (309)
T 3cis_A 171 QAPVLVGVDGSSASELATAIAFDEASR--RNVDLVALHAWSDVDVS-EW--PGI-DWPATQSMAEQVLAERLAGWQER-Y 243 (309)
T ss_dssp CCCEEEECCSSHHHHHHHHHHHHHHHH--TTCCEEEEEESCSSCCT-TC--SSC-CHHHHHHHHHHHHHHHHTTHHHH-C
T ss_pred CCeEEEEeCCChHHHHHHHHHHHHHHh--cCCEEEEEEEeeccccc-CC--Ccc-cHHHHHHHHHHHHHHHHHHHHhh-C
Confidence 458999999999999999998887733 34689999998743211 00 000 00001111111 22233333221 1
Q ss_pred cceEEEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEEE
Q 036516 463 GHVVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGILV 535 (709)
Q Consensus 463 ~~v~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIlv 535 (709)
.++.++..+..+ +..+.|++.|+ ++||||||.|++.+..+. .+|++.++|++++||||.|+.
T Consensus 244 ~~~~~~~~~~~g---~~~~~I~~~a~--~adliV~G~~~~~~~~~~------l~Gsv~~~vl~~~~~pVlvv~ 305 (309)
T 3cis_A 244 PNVAITRVVVRD---QPARQLVQRSE--EAQLVVVGSRGRGGYAGM------LVGSVGETVAQLARTPVIVAR 305 (309)
T ss_dssp TTSCEEEEEESS---CHHHHHHHHHT--TCSEEEEESSCSSCCTTC------SSCHHHHHHHHHCSSCEEEEC
T ss_pred CCCcEEEEEEcC---CHHHHHHHhhC--CCCEEEECCCCCCCcccc------ccCcHHHHHHhcCCCCEEEeC
Confidence 356676655444 89999999997 899999999998766554 489999999999999998863
No 25
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=98.21 E-value=1.1e-05 Score=73.19 Aligned_cols=128 Identities=14% Similarity=0.166 Sum_probs=77.4
Q ss_pred eEEEEeeccCcChHHHHHHHHHHh-cCCCeEEEEEEeeecCCCCCCC---CCC---Cch-hHHHHHHHHHhhhcCCCcEE
Q 036516 553 YHIVMLFIGGADDREALAYSRRMA-EHPNTSLTVVWFITTDQNRPST---EMP---DDH-ELDNQAFDEFKDSMVGNKII 624 (709)
Q Consensus 553 ~~V~~~f~Gg~ddreAl~~a~rma-~~~~~~ltvl~v~~~~~~~~~~---~~~---~~~-~~d~~~l~~~~~~~~~~~v~ 624 (709)
++|+++.-|+++++.|+++|.++| +..+++++++|+.++....... ..+ ..+ +..++.++++........+.
T Consensus 2 ~~ILv~~D~s~~s~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~ 81 (138)
T 3idf_A 2 KKLLFAIDDTEACERAAQYILDMFGKDADCTLTLIHVKPEFMLYGEAVLAAYDEIEMKEEEKAKLLTQKFSTFFTEKGIN 81 (138)
T ss_dssp EEEEEECCSSHHHHHHHHHHHHHHTTCTTEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCcccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 479999999999999999999999 9999999999998732210000 000 001 23334555555433211222
Q ss_pred EEEEeecChhhHHHHHHhhhcCCcEEEEecCCCCCcccccccCcCCCCCccchhhhhhhcCCCCcceEEE
Q 036516 625 FREEIVKDGIGTTQVIQAFAETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEFSVLVV 694 (709)
Q Consensus 625 y~e~~v~~g~~~~~~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~SvLvv 694 (709)
+. ..+..| +..+.|.+.++++||+++|+++.. .|.+.- |.+.+-+... ..|+||||
T Consensus 82 ~~-~~v~~g-~~~~~I~~~a~~~dliV~G~~~~~---------~~~~~~--Gs~~~~vl~~-~~~pVlvv 137 (138)
T 3idf_A 82 PF-VVIKEG-EPVEMVLEEAKDYNLLIIGSSENS---------FLNKIF--ASHQDDFIQK-APIPVLIV 137 (138)
T ss_dssp CE-EEEEES-CHHHHHHHHHTTCSEEEEECCTTS---------TTSSCC--CCTTCHHHHH-CSSCEEEE
T ss_pred eE-EEEecC-ChHHHHHHHHhcCCEEEEeCCCcc---------hHHHHh--CcHHHHHHhc-CCCCEEEe
Confidence 22 223334 244555445559999999998642 222222 6666666653 44688887
No 26
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=98.19 E-value=7e-06 Score=75.37 Aligned_cols=131 Identities=12% Similarity=0.204 Sum_probs=79.9
Q ss_pred ceEEEEeeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCCCCC----C---CCchhHHHHHHHHHhhhcCCCcE-
Q 036516 552 LYHIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFITTDQNRPSTE----M---PDDHELDNQAFDEFKDSMVGNKI- 623 (709)
Q Consensus 552 ~~~V~~~f~Gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~~~~~~----~---~~~~~~d~~~l~~~~~~~~~~~v- 623 (709)
.++|+++.-|+++++.|+++|.++|+..+++++++|+.++........ . +..++..++.++++........+
T Consensus 5 ~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~ 84 (146)
T 3s3t_A 5 YTNILVPVDSSDAAQAAFTEAVNIAQRHQANLTALYVVDDSAYHTPALDPVLSELLDAEAAHAKDAMRQRQQFVATTSAP 84 (146)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEEECCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCC
T ss_pred cceEEEEcCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 468999999999999999999999999999999999987432210000 0 01122334455555543321122
Q ss_pred EEEEEeecChhhHHHHHHh-hh--cCCcEEEEecCCCCCcccccccCcCCCCCccchhhhhhhcCCCCcceEEEe
Q 036516 624 IFREEIVKDGIGTTQVIQA-FA--ETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEFSVLVVQ 695 (709)
Q Consensus 624 ~y~e~~v~~g~~~~~~i~~-~~--~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~SvLvvq 695 (709)
.+. ..+..|. ..+.|.+ .+ .++||+++|+++.. ++.+| -+|...+-+... .+|+||||.
T Consensus 85 ~~~-~~~~~g~-~~~~I~~~~a~~~~~dliV~G~~~~~------~~~~~----~~Gs~~~~vl~~-~~~pVlvV~ 146 (146)
T 3s3t_A 85 NLK-TEISYGI-PKHTIEDYAKQHPEIDLIVLGATGTN------SPHRV----AVGSTTSYVVDH-APCNVIVIR 146 (146)
T ss_dssp CCE-EEEEEEC-HHHHHHHHHHHSTTCCEEEEESCCSS------CTTTC----SSCHHHHHHHHH-CSSEEEEEC
T ss_pred ceE-EEEecCC-hHHHHHHHHHhhcCCCEEEECCCCCC------CcceE----EEcchHHHHhcc-CCCCEEEeC
Confidence 222 2222332 3333333 32 58999999998742 12222 378877777764 456899984
No 27
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=98.18 E-value=1.8e-06 Score=88.28 Aligned_cols=113 Identities=11% Similarity=0.007 Sum_probs=79.7
Q ss_pred ceeEEEeccCCChHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCccccccCccccccchhchhHHHHHHHHHHHhcCcc
Q 036516 385 LRILVCIHKEQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLKPHHQQTKSEAASSTQLINAFTQFQRCYYGH 464 (709)
Q Consensus 385 ~riLv~v~~~~~~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~~ 464 (709)
-|||+|++.++....+++.+..++... ..+++++|+.+..+ ..++.++.+.++.+. .+
T Consensus 155 ~~ilv~~d~s~~~~~al~~a~~la~~~--~a~l~ll~v~~~~~------------------~~~~~l~~~~~~l~~--~~ 212 (268)
T 3ab8_A 155 EGALLGYDASESAVRALHALAPLARAL--GLGVRVVSVHEDPA------------------RAEAWALEAEAYLRD--HG 212 (268)
T ss_dssp CEEEEECCSCHHHHHHHHHHHHHHHHH--TCCEEEEEECSSHH------------------HHHHHHHHHHHHHHH--TT
T ss_pred CEEEEEECCCHHHHHHHHHHHHhhhcC--CCEEEEEEEcCcHH------------------HHHHHHHHHHHHHHH--cC
Confidence 489999999999988998887776332 35689999975320 012223333333222 34
Q ss_pred eEEEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEE
Q 036516 465 VVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGIL 534 (709)
Q Consensus 465 v~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIl 534 (709)
++++..+.- .+..+.|.+.|++. |||+||. +..+. .+|++.++|++++||||.++
T Consensus 213 ~~~~~~~~~---g~~~~~i~~~a~~~--dliV~G~----~~~~~------~~Gs~~~~vl~~~~~pvlvv 267 (268)
T 3ab8_A 213 VEASALVLG---GDAADHLLRLQGPG--DLLALGA----PVRRL------VFGSTAERVIRNAQGPVLTA 267 (268)
T ss_dssp CCEEEEEEC---SCHHHHHHHHCCTT--EEEEEEC----CCSCC------SSCCHHHHHHHHCSSCEEEE
T ss_pred CceEEEEeC---CChHHHHHHHHHhC--CEEEECC----ccccc------EeccHHHHHHhcCCCCEEEe
Confidence 666654443 48999999999988 9999998 22222 58999999999999999875
No 28
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=98.12 E-value=3.3e-06 Score=78.99 Aligned_cols=127 Identities=11% Similarity=0.077 Sum_probs=79.6
Q ss_pred ceEEEEeecc-CcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCCCCCCCCchhHHHHHHHHHhhhcCC-C-cEEEEEE
Q 036516 552 LYHIVMLFIG-GADDREALAYSRRMAEHPNTSLTVVWFITTDQNRPSTEMPDDHELDNQAFDEFKDSMVG-N-KIIFREE 628 (709)
Q Consensus 552 ~~~V~~~f~G-g~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~-~-~v~y~e~ 628 (709)
.++|+++.-| .+.++.|+++|.++|+..+++++++++.++... ..+..++..++.++++...... . .+.. +.
T Consensus 24 ~~~ILv~vD~~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~g~~~~~-~~ 98 (155)
T 3dlo_A 24 YMPIVVAVDKKSDRAERVLRFAAEEARLRGVPVYVVHSLPGGGR----TKDEDIIEAKETLSWAVSIIRKEGAEGEE-HL 98 (155)
T ss_dssp CCCEEEECCSSSHHHHHHHHHHHHHHHHHTCCEEEEEEECCSTT----SCHHHHHHHHHHHHHHHHHHHHTTCCEEE-EE
T ss_pred cCeEEEEECCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCCc----ccHHHHHHHHHHHHHHHHHHHhcCCCceE-EE
Confidence 4579999999 999999999999999999999999999873221 1111123344455555433211 1 2322 22
Q ss_pred eecChhhHHHHHHhhh--cCCcEEEEecCCCCCcccccccCcCCCCCccchhhhhhhcCCCCcceEEEe
Q 036516 629 IVKDGIGTTQVIQAFA--ETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEFSVLVVQ 695 (709)
Q Consensus 629 ~v~~g~~~~~~i~~~~--~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~SvLvvq 695 (709)
.+..|. ..+.|.+.+ .++||+++|+++.. ++.+| -+|.+.+-+... ..|+||||+
T Consensus 99 ~v~~G~-~~~~I~~~a~~~~~DLIV~G~~g~~------~~~~~----~lGSv~~~vl~~-a~~PVLvVr 155 (155)
T 3dlo_A 99 LVRGKE-PPDDIVDFADEVDAIAIVIGIRKRS------PTGKL----IFGSVARDVILK-ANKPVICIK 155 (155)
T ss_dssp EESSSC-HHHHHHHHHHHTTCSEEEEECCEEC------TTSCE----ECCHHHHHHHHH-CSSCEEEEC
T ss_pred EecCCC-HHHHHHHHHHHcCCCEEEECCCCCC------CCCCE----EeccHHHHHHHh-CCCCEEEeC
Confidence 333332 333333333 28999999998642 12221 378888777764 556899984
No 29
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=98.04 E-value=6.2e-06 Score=75.76 Aligned_cols=130 Identities=18% Similarity=0.217 Sum_probs=76.6
Q ss_pred eEEEEeeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCC----C---CCCCC----CCCchhHHHHHHHHHhhhcC--
Q 036516 553 YHIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFITTDQ----N---RPSTE----MPDDHELDNQAFDEFKDSMV-- 619 (709)
Q Consensus 553 ~~V~~~f~Gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~----~---~~~~~----~~~~~~~d~~~l~~~~~~~~-- 619 (709)
++|+++.-|+++++.|+++|.++|+..+++++++|+.++.. . .+.+. .+..++..++.++++.....
T Consensus 3 ~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 82 (147)
T 3hgm_A 3 NRIMVPVDGSKGAVKALEKGVGLQQLTGAELYILCVFKHHSLLEASLSMARPEQLDIPDDALKDYATEIAVQAKTRATEL 82 (147)
T ss_dssp SEEEEECCSBHHHHHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHTBSSCCCGGGCCCTTHHHHHHHHHHHHHHHHHHHT
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCcccccccccccChhhhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 57999999999999999999999999999999999987211 0 00000 11112334455555553321
Q ss_pred CCcEEEEEEeecChhhHHHHHHhhh--cCCcEEEEecCCCCCcccccccCcCCCCCccchhhhhhhcCCCCcceEEE
Q 036516 620 GNKIIFREEIVKDGIGTTQVIQAFA--ETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEFSVLVV 694 (709)
Q Consensus 620 ~~~v~y~e~~v~~g~~~~~~i~~~~--~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~SvLvv 694 (709)
+-.+...+..+..| +..+.|.+.+ .++||+++|+++.. ++.+| -+|...+-+... .+|+||||
T Consensus 83 g~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dliV~G~~~~~------~~~~~----~~Gs~~~~vl~~-~~~pVlvV 147 (147)
T 3hgm_A 83 GVPADKVRAFVKGG-RPSRTIVRFARKRECDLVVIGAQGTN------GDKSL----LLGSVAQRVAGS-AHCPVLVV 147 (147)
T ss_dssp TCCGGGEEEEEEES-CHHHHHHHHHHHTTCSEEEECSSCTT------CCSCC----CCCHHHHHHHHH-CSSCEEEC
T ss_pred CCCccceEEEEecC-CHHHHHHHHHHHhCCCEEEEeCCCCc------cccce----eeccHHHHHHhh-CCCCEEEC
Confidence 11110011222233 2333333333 38999999998742 11222 378777777664 45688876
No 30
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=98.03 E-value=1.8e-05 Score=71.83 Aligned_cols=127 Identities=21% Similarity=0.172 Sum_probs=77.0
Q ss_pred eEEEEeeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCC--CCCC-CCC--CCchhHHHHHHHHHhhhcCCCcEEEEE
Q 036516 553 YHIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFITTDQ--NRPS-TEM--PDDHELDNQAFDEFKDSMVGNKIIFRE 627 (709)
Q Consensus 553 ~~V~~~f~Gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~--~~~~-~~~--~~~~~~d~~~l~~~~~~~~~~~v~y~e 627 (709)
++|+++.-|+++++.|+++|.++|+..+++++++|+.++.. .... +.+ +..++..++.++++..+..-..+.+.
T Consensus 3 ~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~- 81 (137)
T 2z08_A 3 KTILLAYDGSEHARRAAEVAKAEAEAHGARLIVVHAYEPVPDYLGEPFFEEALRRRLERAEGVLEEARALTGVPKEDAL- 81 (137)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEECC--------------CHHHHHHHHHHHHHHHHHCCCGGGEE-
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCCCccccccchHHHHHHHHHHHHHHHHHHHHHcCCCccEEE-
Confidence 47999999999999999999999999999999999986321 1000 000 11123344566666543211011111
Q ss_pred EeecCh---hhHHHHHHhhhcCCcEEEEecCCCCCcccccccCcCCCCCccchhhhhhhcCCCCcceEEEe
Q 036516 628 EIVKDG---IGTTQVIQAFAETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEFSVLVVQ 695 (709)
Q Consensus 628 ~~v~~g---~~~~~~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~SvLvvq 695 (709)
+..| +++.+.+++ .++||+++|+++.. ++.+| -+|.+.+-+... .+|+||||.
T Consensus 82 --~~~g~~~~~I~~~a~~--~~~dliV~G~~~~~------~~~~~----~~Gs~~~~vl~~-~~~pVlvv~ 137 (137)
T 2z08_A 82 --LLEGVPAEAILQAARA--EKADLIVMGTRGLG------ALGSL----FLGSQSQRVVAE-APCPVLLVR 137 (137)
T ss_dssp --EEESSHHHHHHHHHHH--TTCSEEEEESSCTT------CCSCS----SSCHHHHHHHHH-CSSCEEEEC
T ss_pred --EEecCHHHHHHHHHHH--cCCCEEEECCCCCc------hhhhh----hhccHHHHHHhc-CCCCEEEeC
Confidence 1223 233344443 38999999998742 12222 378888777764 556999883
No 31
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=98.03 E-value=1.3e-05 Score=73.92 Aligned_cols=129 Identities=15% Similarity=0.225 Sum_probs=76.4
Q ss_pred ceEEEEeeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCC-----C---CCCCCCCc---hhHHHHHHHHHhhhcCC
Q 036516 552 LYHIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFITTDQN-----R---PSTEMPDD---HELDNQAFDEFKDSMVG 620 (709)
Q Consensus 552 ~~~V~~~f~Gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~-----~---~~~~~~~~---~~~d~~~l~~~~~~~~~ 620 (709)
.++|+++.-|+++++.|+++|.++|+..+++++++|+.++... . +.+.++.. ++..++.++++..+...
T Consensus 6 ~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 85 (150)
T 3tnj_A 6 YHHILLAVDFSSEDSQVVQKVRNLASQIGARLSLIHVLDNIPMPDTPYGTAIPLDTETTYDAMLDVEKQKLSQIGNTLGI 85 (150)
T ss_dssp CSEEEEECCCSTTHHHHHHHHHHHHHHHTCEEEEEEEEC--------CTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEEcCccccccccccccCcCHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4589999999999999999999999999999999999873211 0 00001111 12334555555544321
Q ss_pred CcEEEEEEeecCh---hhHHHHHHhhhcCCcEEEEecCCCCCcccccccCcCCCCCccchhhhhhhcCCCCcceEEEeec
Q 036516 621 NKIIFREEIVKDG---IGTTQVIQAFAETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEFSVLVVQQQ 697 (709)
Q Consensus 621 ~~v~y~e~~v~~g---~~~~~~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~SvLvvqq~ 697 (709)
..+ +..+..| +++.+.+++ .++||+++|+++.. .|. --+|.+.+-+... ..|+||||...
T Consensus 86 ~~~---~~~~~~g~~~~~I~~~a~~--~~~dliV~G~~~~~---------~~~--~~~Gs~~~~vl~~-~~~pVlvv~~~ 148 (150)
T 3tnj_A 86 DPA---HRWLVWGEPREEIIRIAEQ--ENVDLIVVGSHGRH---------GLA--LLLGSTANSVLHY-AKCDVLAVRLR 148 (150)
T ss_dssp CGG---GEEEEESCHHHHHHHHHHH--TTCSEEEEEEC-------------------CCCHHHHHHHH-CSSEEEEEECC
T ss_pred Ccc---eEEEecCCHHHHHHHHHHH--cCCCEEEEecCCCC---------CcC--eEecchHHHHHHh-CCCCEEEEeCC
Confidence 111 1122223 223333333 38999999998742 122 3478887777764 45799999754
No 32
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=98.01 E-value=2.2e-05 Score=71.64 Aligned_cols=127 Identities=20% Similarity=0.262 Sum_probs=74.9
Q ss_pred eEEEEeeccCcC--hHHHHHHHHHHhcCCCeEEEEEEeeecCCCC-CC-----CCCCCchhHHHHH---HHHHhhhcC-C
Q 036516 553 YHIVMLFIGGAD--DREALAYSRRMAEHPNTSLTVVWFITTDQNR-PS-----TEMPDDHELDNQA---FDEFKDSMV-G 620 (709)
Q Consensus 553 ~~V~~~f~Gg~d--dreAl~~a~rma~~~~~~ltvl~v~~~~~~~-~~-----~~~~~~~~~d~~~---l~~~~~~~~-~ 620 (709)
++|+++.-|+++ ++.|+++|.++|+..+++++++|+.++.... .. ...+..++..++. ++++..+.. .
T Consensus 2 k~ILv~vD~s~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 81 (143)
T 3fdx_A 2 NAILVPIDISDKEFTERIISHVESEARIDDAEVHFLTVIPSLPYYASLGMAYTAELPGMDELREGSETQLKEIAKKFSIP 81 (143)
T ss_dssp CEEEEECCTTCSSCCTTHHHHHHHHHHHHTCEEEEEEEECC----------------CHHHHHHHHHHHHHHHHTTSCCC
T ss_pred CEEEEEecCChHhhHHHHHHHHHHHHHhcCCeEEEEEEecCCcccccccccccchhhhHHHHHHHHHHHHHHHHHHcCCC
Confidence 479999999999 9999999999999999999999998732110 00 0001112222233 333333322 1
Q ss_pred C-cEEEEEEeecChhhHHHHHHhhh--cCCcEEEEecCCCCCcccccccCcCCCCCccchhhhhhhcCCCCcceEEEe
Q 036516 621 N-KIIFREEIVKDGIGTTQVIQAFA--ETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEFSVLVVQ 695 (709)
Q Consensus 621 ~-~v~y~e~~v~~g~~~~~~i~~~~--~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~SvLvvq 695 (709)
. ++. ..+..| +..+.|.+.+ .++||+++|+++ . |+.+| -+|.+.+-+... ..|+||||.
T Consensus 82 ~~~v~---~~~~~g-~~~~~I~~~a~~~~~dliV~G~~~-~------~~~~~----~~Gs~~~~v~~~-~~~pVlvv~ 143 (143)
T 3fdx_A 82 EDRMH---FHVAEG-SPKDKILALAKSLPADLVIIASHR-P------DITTY----LLGSNAAAVVRH-AECSVLVVR 143 (143)
T ss_dssp GGGEE---EEEEES-CHHHHHHHHHHHTTCSEEEEESSC-T------TCCSC----SSCHHHHHHHHH-CSSEEEEEC
T ss_pred CCceE---EEEEec-ChHHHHHHHHHHhCCCEEEEeCCC-C------CCeee----eeccHHHHHHHh-CCCCEEEeC
Confidence 1 222 222233 2334443333 389999999984 2 12222 478888877764 556899873
No 33
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=97.96 E-value=2.8e-05 Score=73.47 Aligned_cols=133 Identities=12% Similarity=0.066 Sum_probs=80.6
Q ss_pred ceEEEEeeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCC--CCC-----------CCCCCCc---hhHHHHHHHHHh
Q 036516 552 LYHIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFITTDQ--NRP-----------STEMPDD---HELDNQAFDEFK 615 (709)
Q Consensus 552 ~~~V~~~f~Gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~--~~~-----------~~~~~~~---~~~d~~~l~~~~ 615 (709)
.++|+++.-|.++++.|+++|.++|+..+++++++|+.++.. ... .+.++.+ ++..++.++++.
T Consensus 5 ~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 84 (170)
T 2dum_A 5 FRKVLFPTDFSEGAYRAVEVFEKRNKMEVGEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIKEKLKEEASRKLQEKA 84 (170)
T ss_dssp CSEEEEECCSSHHHHHHHHHHHHHCCSCCSEEEEEEEEETTGGGCCC------------CCTTSHHHHHHHHHHHHHHHH
T ss_pred cceEEEEecCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 458999999999999999999999999999999999987321 000 0011111 122334555555
Q ss_pred hhc--CCCcEEEEEEeecCh---hhHHHHHHhhhcCCcEEEEecCCCCCcccccccCcCCCCCccchhhhhhhcCCCCcc
Q 036516 616 DSM--VGNKIIFREEIVKDG---IGTTQVIQAFAETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEFS 690 (709)
Q Consensus 616 ~~~--~~~~v~y~e~~v~~g---~~~~~~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~S 690 (709)
... .+-.+.+ +..+..| +++.+.+++ .++||+++|+++.. ++.+| -+|.+.+-+... ..|+
T Consensus 85 ~~~~~~g~~~~~-~~~~~~g~~~~~I~~~a~~--~~~DlIV~G~~g~~------~~~~~----~~Gsv~~~vl~~-~~~P 150 (170)
T 2dum_A 85 EEVKRAFRAKNV-RTIIRFGIPWDEIVKVAEE--ENVSLIILPSRGKL------SLSHE----FLGSTVMRVLRK-TKKP 150 (170)
T ss_dssp HHHHHHTTCSEE-EEEEEEECHHHHHHHHHHH--TTCSEEEEESCCCC------C--TT----CCCHHHHHHHHH-CSSC
T ss_pred HHHHHcCCceee-eeEEecCChHHHHHHHHHH--cCCCEEEECCCCCC------ccccc----eechHHHHHHHh-CCCC
Confidence 432 1112222 1122233 233333343 38999999998742 12222 378888877764 5579
Q ss_pred eEEEeecC
Q 036516 691 VLVVQQQP 698 (709)
Q Consensus 691 vLvvqq~~ 698 (709)
||||....
T Consensus 151 Vlvv~~~~ 158 (170)
T 2dum_A 151 VLIIKEVD 158 (170)
T ss_dssp EEEECCCC
T ss_pred EEEEccCC
Confidence 99998654
No 34
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=97.95 E-value=6.7e-05 Score=70.12 Aligned_cols=132 Identities=14% Similarity=0.177 Sum_probs=79.9
Q ss_pred ceEEEEeeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecC-----CCCCCC--C--C-CCc-----------hhHHHHH
Q 036516 552 LYHIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFITTD-----QNRPST--E--M-PDD-----------HELDNQA 610 (709)
Q Consensus 552 ~~~V~~~f~Gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~-----~~~~~~--~--~-~~~-----------~~~d~~~ 610 (709)
.++|+++.-|+++++.|+++|.++|+..+++++++|+.++. ...... . . ..+ ++..++.
T Consensus 5 ~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (162)
T 1mjh_A 5 YKKILYPTDFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKNK 84 (162)
T ss_dssp CCEEEEECCSCHHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHHhhcCCeEEEEEEecCccccccccccccccccccccchhhhHHHHHHHHHHHHHHH
Confidence 45899999999999999999999999999999999998743 100000 0 0 110 1123345
Q ss_pred HHHHhhhcCCCcEEEEEEeecCh---hhHHHHHHhhhcCCcEEEEecCCCCCcccccccCcCCCCCccchhhhhhhcCCC
Q 036516 611 FDEFKDSMVGNKIIFREEIVKDG---IGTTQVIQAFAETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSND 687 (709)
Q Consensus 611 l~~~~~~~~~~~v~y~e~~v~~g---~~~~~~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~ 687 (709)
++++........+.+... +..| +++.+.+++ .++||+++|+++.. ++.+| -+|-+.+-+... .
T Consensus 85 l~~~~~~~~~~g~~~~~~-v~~G~~~~~I~~~a~~--~~~dlIV~G~~g~~------~~~~~----~~GSv~~~vl~~-~ 150 (162)
T 1mjh_A 85 MENIKKELEDVGFKVKDI-IVVGIPHEEIVKIAED--EGVDIIIMGSHGKT------NLKEI----LLGSVTENVIKK-S 150 (162)
T ss_dssp HHHHHHHHHHTTCEEEEE-EEEECHHHHHHHHHHH--TTCSEEEEESCCSS------CCTTC----SSCHHHHHHHHH-C
T ss_pred HHHHHHHHHHcCCceEEE-EcCCCHHHHHHHHHHH--cCCCEEEEcCCCCC------Cccce----EecchHHHHHHh-C
Confidence 555544321111222222 2233 233333443 38999999998742 22222 388888887765 4
Q ss_pred CcceEEEeec
Q 036516 688 EFSVLVVQQQ 697 (709)
Q Consensus 688 ~~SvLvvqq~ 697 (709)
.|+||||...
T Consensus 151 ~~pVlvv~~~ 160 (162)
T 1mjh_A 151 NKPVLVVKRK 160 (162)
T ss_dssp CSCEEEECCC
T ss_pred CCCEEEEeCC
Confidence 5799999753
No 35
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=97.91 E-value=2.3e-05 Score=72.91 Aligned_cols=131 Identities=15% Similarity=0.199 Sum_probs=78.5
Q ss_pred ceEEEEeec--cCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCCCCCC-----CCchhHHHHHHHHHhhhcCCCcE-
Q 036516 552 LYHIVMLFI--GGADDREALAYSRRMAEHPNTSLTVVWFITTDQNRPSTEM-----PDDHELDNQAFDEFKDSMVGNKI- 623 (709)
Q Consensus 552 ~~~V~~~f~--Gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~~~~~~~-----~~~~~~d~~~l~~~~~~~~~~~v- 623 (709)
.++|+++.- |+++++.|+++|.++|+..+++++++|+.++......... +..++..++.++++........+
T Consensus 15 ~~~ILv~vD~~~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~ 94 (156)
T 3fg9_A 15 YRRILLTVDEDDNTSSERAFRYATTLAHDYDVPLGICSVLESEDINIFDSLTPSKIQAKRKHVEDVVAEYVQLAEQRGVN 94 (156)
T ss_dssp CC-EEEECCSCCCHHHHHHHHHHHHHHHHHTCCEEEEEEECCCCTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred CceEEEEECCCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEeCCCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 468999999 9999999999999999999999999999873221100000 00122334455555433211111
Q ss_pred EEEEEeecChhhHHHHHHhh---hcCCcEEEEecCCCCCcccccccCcCCCCCccchhhhhhhcCCCCcceEEEe
Q 036516 624 IFREEIVKDGIGTTQVIQAF---AETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEFSVLVVQ 695 (709)
Q Consensus 624 ~y~e~~v~~g~~~~~~i~~~---~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~SvLvvq 695 (709)
.+.-....+|. ..+.|.+. ..++||+++|+++.. .|. . -+|.+.+-+... .+|+||||.
T Consensus 95 ~~~~~v~~~g~-~~~~I~~~~a~~~~~DlIV~G~~g~~---------~~~-~-~~Gs~~~~vl~~-a~~PVlvV~ 156 (156)
T 3fg9_A 95 QVEPLVYEGGD-VDDVILEQVIPEFKPDLLVTGADTEF---------PHS-K-IAGAIGPRLARK-APISVIVVR 156 (156)
T ss_dssp SEEEEEEECSC-HHHHHHHTHHHHHCCSEEEEETTCCC---------TTS-S-SCSCHHHHHHHH-CSSEEEEEC
T ss_pred ceEEEEEeCCC-HHHHHHHHHHHhcCCCEEEECCCCCC---------ccc-e-eecchHHHHHHh-CCCCEEEeC
Confidence 12222222132 33333332 258999999998742 232 2 488888877764 556999984
No 36
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=97.88 E-value=8.5e-05 Score=67.59 Aligned_cols=126 Identities=17% Similarity=0.201 Sum_probs=77.1
Q ss_pred eEEEEeeccCcChHHHHHHHHHHhcCCCeEEEEEEeee--cCCCCCCC------CCCCchhHHHHHHHHHhhhcCCCcEE
Q 036516 553 YHIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFIT--TDQNRPST------EMPDDHELDNQAFDEFKDSMVGNKII 624 (709)
Q Consensus 553 ~~V~~~f~Gg~ddreAl~~a~rma~~~~~~ltvl~v~~--~~~~~~~~------~~~~~~~~d~~~l~~~~~~~~~~~v~ 624 (709)
++|+++.-|+++++.|+++|.++|+..+++++++|+.+ +....... ..+..++..++.++++..+.. -.+
T Consensus 3 ~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~- 80 (141)
T 1jmv_A 3 KHILVAVDLSEESPILLKKAVGIAKRHDAKLSIIHVDVNFSDLYTGLIDVNMSSMQDRISTETQKALLDLAESVD-YPI- 80 (141)
T ss_dssp SEEEEEECCSTTHHHHHHHHHHHHHHHTCEEEEEEEEECCGGGCCCCEEHHHHHHTTCCCCHHHHHHHHHHHHSS-SCC-
T ss_pred ceEEEEecCchhhHHHHHHHHHHHHhcCCEEEEEEEecCchhhhccccccchHHHHHHHHHHHHHHHHHHHHHcC-CCc-
Confidence 47999999999999999999999999999999999984 21110000 001112223455666654432 111
Q ss_pred EEEEeecCh---hhHHHHHHhhhcCCcEEEEecCCCCCcccccccCcCCCCCccchhhhhhhcCCCCcceEEEeec
Q 036516 625 FREEIVKDG---IGTTQVIQAFAETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEFSVLVVQQQ 697 (709)
Q Consensus 625 y~e~~v~~g---~~~~~~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~SvLvvqq~ 697 (709)
.+..+..| +++.+.+++ .++||+++|++ .. . |. .+|-..+-+... ..|+||||...
T Consensus 81 -~~~~~~~g~~~~~I~~~a~~--~~~dliV~G~~-~~--~-------~~---~lgs~~~~vl~~-~~~pVlvv~~~ 139 (141)
T 1jmv_A 81 -SEKLSGSGDLGQVLSDAIEQ--YDVDLLVTGHH-QD--F-------WS---KLMSSTRQVMNT-IKIDMLVVPLR 139 (141)
T ss_dssp -CCEEEEEECHHHHHHHHHHH--TTCCEEEEEEC-CC--C-------HH---HHHHHHHHHHTT-CCSEEEEEECC
T ss_pred -eEEEEecCCHHHHHHHHHHh--cCCCEEEEeCC-Cc--h-------hh---hhcchHHHHHhc-CCCCEEEeeCC
Confidence 11122222 334444443 37999999998 42 1 21 257777777654 55799999754
No 37
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=97.81 E-value=7.8e-05 Score=70.16 Aligned_cols=132 Identities=14% Similarity=0.179 Sum_probs=77.0
Q ss_pred ceEEEEeeccCcChHHHHHHHHHHhcCCCeEEEEE--EeeecCCC-CCC-----CCCCCchhHHHHHHHHHhhhcCCCcE
Q 036516 552 LYHIVMLFIGGADDREALAYSRRMAEHPNTSLTVV--WFITTDQN-RPS-----TEMPDDHELDNQAFDEFKDSMVGNKI 623 (709)
Q Consensus 552 ~~~V~~~f~Gg~ddreAl~~a~rma~~~~~~ltvl--~v~~~~~~-~~~-----~~~~~~~~~d~~~l~~~~~~~~~~~v 623 (709)
.++|++++-|++.++.|+++|.++|+ .+++++++ ++.++... ... +..+..++..++.++++........+
T Consensus 17 ~~~ILv~vD~s~~s~~al~~A~~lA~-~~a~l~ll~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gv 95 (163)
T 1tq8_A 17 YKTVVVGTDGSDSSMRAVDRAAQIAG-ADAKLIIASAYLPQHEDARAADILKDESYKVTGTAPIYEILHDAKERAHNAGA 95 (163)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHT-TTSEEEEEEECCC--------------------CCTHHHHHHHHHHHHHTTTC
T ss_pred CCEEEEEcCCCHHHHHHHHHHHHHhC-CCCEEEEEEeeeccCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 46899999999999999999999999 99999999 88752211 000 00011122234455555443211112
Q ss_pred E-EEEEeecChhhHHHHHHhhh--cCCcEEEEecCCCCCcccccccCcCCCCCccchhhhhhhcCCCCcceEEEeec
Q 036516 624 I-FREEIVKDGIGTTQVIQAFA--ETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEFSVLVVQQQ 697 (709)
Q Consensus 624 ~-y~e~~v~~g~~~~~~i~~~~--~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~SvLvvqq~ 697 (709)
. +... +..|. ..+.|.+.+ .++||+++|+++.. ++.+| -+|-+.+-+... .+|+||||...
T Consensus 96 ~~v~~~-v~~G~-~~~~I~~~a~~~~~DLIV~G~~g~~------~~~~~----~lGSva~~vl~~-a~~PVlvV~~~ 159 (163)
T 1tq8_A 96 KNVEER-PIVGA-PVDALVNLADEEKADLLVVGNVGLS------TIAGR----LLGSVPANVSRR-AKVDVLIVHTT 159 (163)
T ss_dssp CEEEEE-EECSS-HHHHHHHHHHHTTCSEEEEECCCCC------SHHHH----HTBBHHHHHHHH-TTCEEEEECCC
T ss_pred CeEEEE-EecCC-HHHHHHHHHHhcCCCEEEECCCCCC------cccce----eeccHHHHHHHh-CCCCEEEEeCC
Confidence 1 2222 22342 333333322 48999999998742 12222 378887777764 45799999764
No 38
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=97.59 E-value=0.00051 Score=64.99 Aligned_cols=133 Identities=10% Similarity=0.111 Sum_probs=74.2
Q ss_pred ceEEEEeeccCc---------ChHHHHHHHHHHh-cC--CCeEEEEEEeeecCC--CC---C-CCCC-------CCchhH
Q 036516 552 LYHIVMLFIGGA---------DDREALAYSRRMA-EH--PNTSLTVVWFITTDQ--NR---P-STEM-------PDDHEL 606 (709)
Q Consensus 552 ~~~V~~~f~Gg~---------ddreAl~~a~rma-~~--~~~~ltvl~v~~~~~--~~---~-~~~~-------~~~~~~ 606 (709)
.++|+++.-|.+ .++.|+++|.+++ +. .+++++++|+.++.. .. . .... +..++.
T Consensus 5 ~~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (175)
T 2gm3_A 5 PTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASPEDFRDMRQSNKAK 84 (175)
T ss_dssp CEEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC----------CCCCSHHHHHHHTTSHHHH
T ss_pred ccEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeecccccccccccccCCHHHHHHHHHHHHHH
Confidence 468999999888 8899999999986 54 699999999975211 10 0 0000 011112
Q ss_pred HHHHHHHHhhhcCCCcEEEEEEeecCh---hhHHHHHHhhhcCCcEEEEecCCCCCcccccccCcCCCCCccchhhhhhh
Q 036516 607 DNQAFDEFKDSMVGNKIIFREEIVKDG---IGTTQVIQAFAETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLV 683 (709)
Q Consensus 607 d~~~l~~~~~~~~~~~v~y~e~~v~~g---~~~~~~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~la 683 (709)
.++.++++........+.+.-. +..| +++.+.+++ .++||+++|+++.. ++.+| -+|-+.+-+.
T Consensus 85 ~~~~l~~~~~~~~~~g~~~~~~-v~~G~~~~~I~~~a~~--~~~DLIVmG~~g~~------~~~~~----~~Gsva~~vl 151 (175)
T 2gm3_A 85 GLHLLEFFVNKCHEIGVGCEAW-IKTGDPKDVICQEVKR--VRPDFLVVGSRGLG------RFQKV----FVGTVSAFCV 151 (175)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEE-EEESCHHHHHHHHHHH--HCCSEEEEEECCCC------------------CHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCceEEE-EecCCHHHHHHHHHHH--hCCCEEEEeCCCCC------hhhhh----hcCchHHHHH
Confidence 3445666554321112222222 2233 223333333 37999999998642 22222 3787777777
Q ss_pred cCCCCcceEEEeecC
Q 036516 684 NSNDEFSVLVVQQQP 698 (709)
Q Consensus 684 s~d~~~SvLvvqq~~ 698 (709)
.. ..|+||||....
T Consensus 152 ~~-a~~pVlvv~~~~ 165 (175)
T 2gm3_A 152 KH-AECPVMTIKRNA 165 (175)
T ss_dssp HH-CSSCEEEEECCG
T ss_pred hC-CCCCEEEEcCCc
Confidence 64 457999998654
No 39
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=97.49 E-value=0.052 Score=56.97 Aligned_cols=111 Identities=14% Similarity=0.107 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHhhhcChHHHHhhhhh---HHHHHHHHHH-HHHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHh
Q 036516 28 LRTFAEFGMILHAFVLGVQIDLGLVKHIRKR---AVIIGITSTL-LPLVFGLSSFRIVQRISHLDDETASSIAASVVVNS 103 (709)
Q Consensus 28 l~~la~iGli~~lF~~Gle~d~~~l~~~~~~---~~~i~~~~~~-ip~~~g~~~~~~l~~~~~~~~~~~~~~l~l~~~ls 103 (709)
++......+.+.||..|++++.+.+++..++ ........++ .|+ ++++++.++.. ++......++++++=+
T Consensus 41 ~~~~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi~Pl-l~~~l~~~~~l----~~~~~~Glil~~~~P~ 115 (332)
T 3zux_A 41 AGPYIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPA-TAWCLSKLLNL----PAEIAVGVILVGCCPG 115 (332)
T ss_dssp GGGGHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHHHHHH-HHHHHHHHTTC----CHHHHHHHHHHHHSCC
T ss_pred hHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHHHHHH-HHHHHHHHhCC----ChHHHHHHHHHhcCCc
Confidence 3345567888999999999999999965443 2222333443 443 44555544421 1111222222222223
Q ss_pred hchHHHHHHHHHHhccccChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036516 104 MTSLVVITGLLKELKMLNSELGRLAASITIVSHIFGWSASMILLSVR 150 (709)
Q Consensus 104 ~Ts~~vv~~iL~el~ll~s~~G~lals~a~v~D~~~~~ll~i~~~~~ 150 (709)
.++..+.++ +.+.+. .++++...++.+++.+.+-+...+.
T Consensus 116 ~~~s~v~t~------~a~Gd~-~la~~~~~~stll~~~~~Pl~~~l~ 155 (332)
T 3zux_A 116 GTASNVMTY------LARGNV-ALSVAVTSVSTLTSPLLTPAIFLML 155 (332)
T ss_dssp CTHHHHHHH------HTTCCH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHH------HhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444332 223333 6778888889998888876555444
No 40
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=97.43 E-value=0.00016 Score=65.47 Aligned_cols=38 Identities=16% Similarity=0.270 Sum_probs=36.0
Q ss_pred ceEEEEeeccCcChHHHHHHHHHHhcCCCeEEEEEEee
Q 036516 552 LYHIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFI 589 (709)
Q Consensus 552 ~~~V~~~f~Gg~ddreAl~~a~rma~~~~~~ltvl~v~ 589 (709)
.++|+++.-|.++++.|+++|.++|+..+++++++|+.
T Consensus 4 ~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~ 41 (138)
T 1q77_A 4 MKVLLVLTDAYSDCEKAITYAVNFSEKLGAELDILAVL 41 (138)
T ss_dssp CEEEEEEESTTCCCHHHHHHHHHHHTTTCCEEEEEEEC
T ss_pred ccEEEEEccCCHhHHHHHHHHHHHHHHcCCeEEEEEEe
Confidence 46899999999999999999999999999999999998
No 41
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=96.24 E-value=0.067 Score=54.04 Aligned_cols=222 Identities=13% Similarity=0.073 Sum_probs=135.2
Q ss_pred cceeEEEeccCCChHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCccccccCccccccchhchhHHHHHHHHHHHhcCc
Q 036516 384 SLRILVCIHKEQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLKPHHQQTKSEAASSTQLINAFTQFQRCYYG 463 (709)
Q Consensus 384 e~riLv~v~~~~~~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~ 463 (709)
.-++||++..|..-.+++.++.++...+ ..+.+.++. ++...+ . -.++ +.++++|-+. .
T Consensus 20 rP~iLV~sg~p~~~~~li~la~~lt~~~---G~ltv~~i~--p~~~~~-----------~--l~~q-l~~l~~~l~~--r 78 (294)
T 3g40_A 20 KANLLVPVEDPRELMGTFDFLRDITYPK---GSVKLLGLA--GNTDKE-----------N--LLSQ-LPSISEGFQE--E 78 (294)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHHHHTTT---CEEEEEECC-----CTT-----------C--HHHH-HHHHHHHHHH--T
T ss_pred CCcEEEecCCchhhhhHHHHHHHhccCc---eeEEEEEEc--cCCCcc-----------H--HHHH-HHHHHHHHHh--C
Confidence 7899999999999999999999998655 477777774 221100 0 0122 2556666543 3
Q ss_pred ceEEEEEEEEccCCChhHHHHHHHhhc-----CccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEEEecC
Q 036516 464 HVVVQHFTTIAPYATMHDDVCTLALDK-----RVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGILVHRG 538 (709)
Q Consensus 464 ~v~v~~~~~vs~~~~~~~dI~~~A~e~-----~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIlvdrg 538 (709)
++. .++++-+-++.++++....+.+ +.+.|+||+..+... +..++.+.++. .++.-.|.++-+..
T Consensus 79 ~v~--a~~~vi~a~d~~~G~~~lvq~yglg~l~PNTilLg~~~~~e~-------~~~y~~~i~~~-~~~~~nVlil~~~~ 148 (294)
T 3g40_A 79 GVF--SSWTIIDTAEFEENLVVGMEALTGSFFRPSILFLRLPENRDR-------DEEIREIIRKA-SMYRMGVLLFSKHP 148 (294)
T ss_dssp TCE--EEEEEC-----CHHHHHHHHHHTTCSSCSCEEEEECCSSGGG-------HHHHHHHHHHH-HHTTCEEEEEECCT
T ss_pred Cce--eEEEEEecCChhHHHHHHHHHcCCCCCCCCEEEeCCCCChhh-------hHHHHHHHHHH-HHhCceEEEEecCC
Confidence 343 3334444468899999988877 469999998755422 22477888775 45588888875432
Q ss_pred CCCCCCcccCCCcceEEEEeec--------cC--cChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCCCCCCCCchhHHH
Q 036516 539 QNKSNRPVYTGELLYHIVMLFI--------GG--ADDREALAYSRRMAEHPNTSLTVVWFITTDQNRPSTEMPDDHELDN 608 (709)
Q Consensus 539 ~~~~~~~~~~~~~~~~V~~~f~--------Gg--~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~~~~~~~~~~~~~d~ 608 (709)
... . .. .++|=+-.- || .+-..++-+|-.+.++.++++.++.++++ +.+++..+
T Consensus 149 ~~~-f----g~--~~~IdvW~~~~~~~W~~g~~~~Ng~LmlllAylL~~nW~A~I~L~~vV~d---------e~a~~~a~ 212 (294)
T 3g40_A 149 QAG-L----GR--QNLINLWIENRGLDWDISMELGNMDLALLIAYKLKSNWKASLSFMTFAPT---------AIQAQAAE 212 (294)
T ss_dssp TTT-T----TT--SCEEEEECCCC---CCCCSCCCTTHHHHHHHHHHHHHHTCEEEEEEECSS---------HHHHHHHH
T ss_pred ccC-C----CC--CceEEEecCCCCCcccccccccchhHHHHHHHHHhhCcCCeEEEEEecCC---------HHHHHHHH
Confidence 211 0 01 123433311 22 34467888888898889999999999862 22355666
Q ss_pred HHHHHHhhhcCCCcEEEEEEeecChhhHHHHHHhhhcCCcEEEEecCCCC
Q 036516 609 QAFDEFKDSMVGNKIIFREEIVKDGIGTTQVIQAFAETFDLFIVGKNHDP 658 (709)
Q Consensus 609 ~~l~~~~~~~~~~~v~y~e~~v~~g~~~~~~i~~~~~~~DLiiVG~~~~~ 658 (709)
.+++++....--....+ . |. .+-.+++++. .+.||+++|-....
T Consensus 213 ~~l~~Lv~~~Ri~a~~~--v-v~--~~F~~il~~s-~~ADL~flGl~~~~ 256 (294)
T 3g40_A 213 NFLQSLAELARIPNVKM--Q-VL--RENPIKSSKL-PFASLHIFSLDPNP 256 (294)
T ss_dssp HHHHHHHHHHTCCSCEE--E-EE--SSCTTTSSSC-CCCSEEEEECCSSC
T ss_pred HHHHHHHHHhcCCceEE--E-ec--CchHHHHhhC-cCCCEEEEcCCCCC
Confidence 77777775431111112 2 22 2344556664 67999999986653
No 42
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=76.04 E-value=4.8 Score=41.69 Aligned_cols=55 Identities=20% Similarity=0.132 Sum_probs=40.8
Q ss_pred EEEEeeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCCCCCCCCchhHHHHHHHHHhhhc
Q 036516 554 HIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFITTDQNRPSTEMPDDHELDNQAFDEFKDSM 618 (709)
Q Consensus 554 ~V~~~f~Gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 618 (709)
++++.|.||+|+--.|.++.+.....+..+.++++.+...+ ..+.++++++..++
T Consensus 48 ~ivVa~SGGkDS~vLL~Ll~~~~~~~~~~i~vv~vDtg~~~----------~et~~~v~~~~~~~ 102 (325)
T 1zun_A 48 NPVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDTRWKF----------QEMYRFRDQMVEEM 102 (325)
T ss_dssp SEEEECCSSHHHHHHHHHHHHHHTTSCCSSCEEEECCSCCC----------HHHHHHHHHHHHTT
T ss_pred CEEEEEcChHHHHHHHHHHHHhccccCCCEEEEEEECCCCC----------HHHHHHHHHHHHHc
Confidence 48899999999999999999987654556778887653222 23557888887665
No 43
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=68.14 E-value=63 Score=33.23 Aligned_cols=93 Identities=12% Similarity=0.031 Sum_probs=53.0
Q ss_pred HHHHHhcCCCCChhhHHHhhhhhhhHhhhhHHHHHHhhhccccccccch--hhHHHHHHHHHHHHHHHHHHHHhHhhhCC
Q 036516 227 FFFGLCLPDGPPLGTQLVQKLDFFTSGFLLPVFCAISGIRMELYLINEK--SFIKIEFIILMSYLGKFTGVMVPSLFFGM 304 (709)
Q Consensus 227 f~~Gl~ip~~~~~~~~l~~kl~~~~~~~flPlFF~~~G~~~d~~~l~~~--~~~~~~~ii~~~~~~K~~~~~l~~~~~~~ 304 (709)
.++|...|+... . ++.. ....+++-+...|+++++..+... .+.......+.-++...+.++..++.++.
T Consensus 28 ~~lg~~~P~~~~---~----~~~~-i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi~Pll~~~l~~~~~l 99 (332)
T 3zux_A 28 AAAAFFAPDTFK---W----AGPY-IPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLLNL 99 (332)
T ss_dssp HHHHHHCGGGTG---G----GGGG-HHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcchhhh---h----hHHH-HHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 466777776321 1 2233 235666778889999999887643 34444444455566677777777777777
Q ss_pred CHHHHHHHHHH-hhhhhhHHHHHH
Q 036516 305 SFLKASCLALI-MCCRGIAEIAVY 327 (709)
Q Consensus 305 ~~~~~~~lg~~-m~~kG~~~l~~~ 327 (709)
+......+-+. .+|-|....+..
T Consensus 100 ~~~~~~Glil~~~~P~~~~s~v~t 123 (332)
T 3zux_A 100 PAEIAVGVILVGCCPGGTASNVMT 123 (332)
T ss_dssp CHHHHHHHHHHHHSCCCTHHHHHH
T ss_pred ChHHHHHHHHHhcCCchhHHHHHH
Confidence 65433322222 234445544433
No 44
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=67.48 E-value=12 Score=31.36 Aligned_cols=58 Identities=7% Similarity=-0.050 Sum_probs=41.1
Q ss_pred CChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEEEecC
Q 036516 477 ATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGILVHRG 538 (709)
Q Consensus 477 ~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIlvdrg 538 (709)
+...+.|.++++|++++.||+|...+. ||.........+.+.+++-++ +.|| .++|..
T Consensus 37 ~~~~~~l~~li~e~~v~~iVvGlP~~m--dGt~~~~~~~~~~f~~~L~~~-~lpV-~~~DER 94 (98)
T 1iv0_A 37 EEDVEALLDFVRREGLGKLVVGLPLRT--DLKESAQAGKVLPLVEALRAR-GVEV-ELWDER 94 (98)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEECCCCC--CSSSCCCSSTTHHHHHHHHHT-TCEE-EEECCS
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeccCC--CCCcCHHHHHHHHHHHHHhcC-CCCE-EEECCC
Confidence 345678899999999999999987653 333222233477888888777 8998 556654
No 45
>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*
Probab=60.10 E-value=1.6e+02 Score=30.26 Aligned_cols=123 Identities=13% Similarity=0.084 Sum_probs=65.2
Q ss_pred cceeccchhhHHHHHHHhhcCCccEEEEEecCCCCCCCcccCCCcceEEEEeeccCcChHHHHHHHHHHhcCCCeEEEEE
Q 036516 507 GILESTDLSIRALNRNVLHKAPCSVGILVHRGQNKSNRPVYTGELLYHIVMLFIGGADDREALAYSRRMAEHPNTSLTVV 586 (709)
Q Consensus 507 g~~~~~~~~~~~~~~~Vl~~apCsVgIlvdrg~~~~~~~~~~~~~~~~V~~~f~Gg~ddreAl~~a~rma~~~~~~ltvl 586 (709)
|.++..-+....+.+.|-+....||+| |-... .. .-||.+..++.++|+++.+.. +..+
T Consensus 188 GslenR~r~~~eiv~avr~~v~~pv~v---Rls~~--~~-------------~~~g~~~~~~~~la~~L~~~G---vd~i 246 (340)
T 3gr7_A 188 GSPENRYRFLGEVIDAVREVWDGPLFV---RISAS--DY-------------HPDGLTAKDYVPYAKRMKEQG---VDLV 246 (340)
T ss_dssp SSHHHHHHHHHHHHHHHHHHCCSCEEE---EEESC--CC-------------STTSCCGGGHHHHHHHHHHTT---CCEE
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCceEE---Eeccc--cc-------------cCCCCCHHHHHHHHHHHHHcC---CCEE
Confidence 445444445678888887777888877 31110 00 024667788999999998764 2344
Q ss_pred EeeecCCCCCCCCCCCchhHHHHHHHHHhhhcCCCcEEEEEEeecChhhHHHHHHhhhcCCcEEEEecCC
Q 036516 587 WFITTDQNRPSTEMPDDHELDNQAFDEFKDSMVGNKIIFREEIVKDGIGTTQVIQAFAETFDLFIVGKNH 656 (709)
Q Consensus 587 ~v~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~v~y~e~~v~~g~~~~~~i~~~~~~~DLiiVG~~~ 656 (709)
++........ ........+.+++++++.... ..++-. --+.+.++..+.+++ +..|+|.+||.-
T Consensus 247 ~vs~g~~~~~--~~~~~~~~~~~~~~~ik~~~~-iPVi~~-GgI~s~e~a~~~L~~--G~aD~V~iGR~~ 310 (340)
T 3gr7_A 247 DVSSGAIVPA--RMNVYPGYQVPFAELIRREAD-IPTGAV-GLITSGWQAEEILQN--GRADLVFLGREL 310 (340)
T ss_dssp EEECCCSSCC--CCCCCTTTTHHHHHHHHHHTT-CCEEEE-SSCCCHHHHHHHHHT--TSCSEEEECHHH
T ss_pred EEecCCccCC--CCCCCccccHHHHHHHHHHcC-CcEEee-CCCCCHHHHHHHHHC--CCeeEEEecHHH
Confidence 4432111000 000011223456777776431 133322 122344455555552 359999999974
No 46
>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein, rossmann- like fold, APO-form, extended loop region; HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A* 3g6k_A*
Probab=57.96 E-value=12 Score=38.28 Aligned_cols=91 Identities=16% Similarity=0.123 Sum_probs=53.1
Q ss_pred EEEEeeccCcChHHHHHHHHHHh-c-----------------CCCeEEEEEEeeecCCCCCCCCCCCchhHHHHHHHHHh
Q 036516 554 HIVMLFIGGADDREALAYSRRMA-E-----------------HPNTSLTVVWFITTDQNRPSTEMPDDHELDNQAFDEFK 615 (709)
Q Consensus 554 ~V~~~f~Gg~ddreAl~~a~rma-~-----------------~~~~~ltvl~v~~~~~~~~~~~~~~~~~~d~~~l~~~~ 615 (709)
++++.|.||+|+--.|.++.+.- + .|...+.|+++.+...| .+ -.+|++++.
T Consensus 60 ~ialSfSGGKDStVLLhL~~kal~~~~~~~~~~~~~~~~~~~~p~~~ipvifiDTG~~F---------pE-T~ef~d~~~ 129 (308)
T 3fwk_A 60 EISFSYNGGKDCQVLLLLYLSCLWEYYIVKLSQSQFDGKFHRFPLTKLPTVFIDHDDTF---------KT-LENFIEETS 129 (308)
T ss_dssp SEEEECCSSHHHHHHHHHHHHHHHHHHTCCE-----------------EEEECCCTTCC---------HH-HHHHHHHHH
T ss_pred CEEEEecCChhHHHHHHHHHHHhhhhcccccccccccccccccCCCCccEEEEeCCCCC---------HH-HHHHHHHHH
Confidence 48999999999999999887742 1 12346788887765444 22 335777877
Q ss_pred hhcCCCcEEEEEEeecChh---hHHHHHHhhhcCCcEEEEecCCC
Q 036516 616 DSMVGNKIIFREEIVKDGI---GTTQVIQAFAETFDLFIVGKNHD 657 (709)
Q Consensus 616 ~~~~~~~v~y~e~~v~~g~---~~~~~i~~~~~~~DLiiVG~~~~ 657 (709)
.++.- ++. ....+.+. +-..-+++....+|.++.|.|++
T Consensus 130 ~~ygL-~L~--v~~p~~~~~~~~~cc~~~K~~P~~~AwitG~RR~ 171 (308)
T 3fwk_A 130 LRYSL-SLY--ESDRDKCETMAEAFETFLQVFPETKAIVIGIRHT 171 (308)
T ss_dssp HHTTE-EEE--ECCTTSCCCHHHHHHHHHHHCTTCCEEECCCCTT
T ss_pred HHhCC-cEE--EeCCCCCHHHHHHHHHHHHhCCCCCEEEEEeecC
Confidence 76531 111 11111111 12223344444699999999987
No 47
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=55.80 E-value=21 Score=35.36 Aligned_cols=92 Identities=17% Similarity=0.175 Sum_probs=53.4
Q ss_pred CcChHHHHHHHHHHhcCCCe--EEEEEEeeecCCCCCCCCCCCchhHHHHHHHHHhhhcCCCcEEEEE-Ee----ecChh
Q 036516 562 GADDREALAYSRRMAEHPNT--SLTVVWFITTDQNRPSTEMPDDHELDNQAFDEFKDSMVGNKIIFRE-EI----VKDGI 634 (709)
Q Consensus 562 g~ddreAl~~a~rma~~~~~--~ltvl~v~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~v~y~e-~~----v~~g~ 634 (709)
.|.|.+|++.|.|+++. +. +++++-+=++ . .++.+++....-. +++...+ -. --+..
T Consensus 39 np~d~~Ale~A~~Lke~-g~~~~V~av~~G~~------------~--a~~~lr~ala~Ga-D~vi~v~~d~~~~~~~~~~ 102 (255)
T 1efv_B 39 NPFCEIAVEEAVRLKEK-KLVKEVIAVSCGPA------------Q--CQETIRTALAMGA-DRGIHVEVPPAEAERLGPL 102 (255)
T ss_dssp CHHHHHHHHHHHHHHHT-TSCSEEEEEEEEST------------T--HHHHHHHHHHHTC-SEEEEEECCHHHHTTCCHH
T ss_pred CHHHHHHHHHHHHHHhc-CCCceEEEEEeCCh------------h--HHHHHHHHHhcCC-CEEEEEecChhhcccCCHH
Confidence 79999999999999987 55 8888876431 0 1223333322211 2444333 11 11233
Q ss_pred hHHHHHHhhh--cCCcEEEEecCCCC-----CcccccccCcC
Q 036516 635 GTTQVIQAFA--ETFDLFIVGKNHDP-----CCKATLGLSEW 669 (709)
Q Consensus 635 ~~~~~i~~~~--~~~DLiiVG~~~~~-----~~~~~~gl~~w 669 (709)
.+..++.+.. .+||+|+.|++... -.|.++.+.+|
T Consensus 103 ~~A~~La~~i~~~~~dlVl~G~~s~d~d~~~v~p~lA~~L~~ 144 (255)
T 1efv_B 103 QVARVLAKLAEKEKVDLVLLGKQAIDDDCNQTGQMTAGFLDW 144 (255)
T ss_dssp HHHHHHHHHHHHHTCSEEEEESCCTTTCCCCHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcCCCEEEEeCcccCCchhhHHHHHHHHhCC
Confidence 3444444432 46999999998732 24666677777
No 48
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=55.49 E-value=27 Score=34.49 Aligned_cols=92 Identities=15% Similarity=0.181 Sum_probs=53.6
Q ss_pred CcChHHHHHHHHHHhcCCCe--EEEEEEeeecCCCCCCCCCCCchhHHHHHHHHHhhhcCCCcEEEEE--Ee---ecChh
Q 036516 562 GADDREALAYSRRMAEHPNT--SLTVVWFITTDQNRPSTEMPDDHELDNQAFDEFKDSMVGNKIIFRE--EI---VKDGI 634 (709)
Q Consensus 562 g~ddreAl~~a~rma~~~~~--~ltvl~v~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~v~y~e--~~---v~~g~ 634 (709)
.|.|.+|++.|.|+++. +. +++++-+-++. .++.+++....-. +++...+ .. --+..
T Consensus 36 np~d~~Ale~A~~Lke~-g~~~~V~av~~G~~~--------------a~~~lr~ala~Ga-D~vi~v~~d~~~~~~~~~~ 99 (252)
T 1efp_B 36 NPFDEIAVEEAIRLKEK-GQAEEIIAVSIGVKQ--------------AAETLRTALAMGA-DRAILVVAADDVQQDIEPL 99 (252)
T ss_dssp CHHHHHHHHHHHHHHTT-TSCSEEEEEEEESGG--------------GHHHHHHHHHHTC-SEEEEEECCSSTTCCCCHH
T ss_pred CHHHHHHHHHHHHHHhc-CCCceEEEEEeCChh--------------HHHHHHHHHhcCC-CEEEEEecChhhcccCCHH
Confidence 79999999999999987 55 88888764310 1123333322111 2444433 11 11233
Q ss_pred hHHHHHHhhh--cCCcEEEEecCCCC-----CcccccccCcC
Q 036516 635 GTTQVIQAFA--ETFDLFIVGKNHDP-----CCKATLGLSEW 669 (709)
Q Consensus 635 ~~~~~i~~~~--~~~DLiiVG~~~~~-----~~~~~~gl~~w 669 (709)
.+..++.+.. .+||+|+.|++... -.|.++.+.+|
T Consensus 100 ~~a~~La~~i~~~~~dlVl~G~~s~d~~~~~v~p~lA~~L~~ 141 (252)
T 1efp_B 100 AVAKILAAVARAEGTELIIAGKQAIDNDMNATGQMLAAILGW 141 (252)
T ss_dssp HHHHHHHHHHHHHTCSEEEEESCCTTTCCCCHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCccCCchhhHHHHHHHHhCC
Confidence 3444444432 46999999998732 24666667677
No 49
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=53.49 E-value=54 Score=31.12 Aligned_cols=51 Identities=18% Similarity=0.173 Sum_probs=36.6
Q ss_pred EEEEeeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCCCCCCCCchhHHHHHHHHHhhhc
Q 036516 554 HIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFITTDQNRPSTEMPDDHELDNQAFDEFKDSM 618 (709)
Q Consensus 554 ~V~~~f~Gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 618 (709)
+|++.|.||+|+--.|.++.+.. + ++.++++.+... ...+.++++++..+.
T Consensus 46 ~v~Va~SGGkDS~vLL~ll~~~~--~--~v~~v~vd~g~~----------~~e~~~~v~~~~~~~ 96 (215)
T 1sur_A 46 EYVLSSSFGIQAAVSLHLVNQIR--P--DIPVILTDTGYL----------FPETYRFIDELTDKL 96 (215)
T ss_dssp EEEEECCCCTTHHHHHHHHHHHS--T--TCEEEEEECSCB----------CHHHHHHHHHHHHHT
T ss_pred CEEEEecCCHHHHHHHHHHHHhC--C--CCeEEEeeCCCC----------CHHHHHHHHHHHHHh
Confidence 58999999999999999888874 2 466788765211 123456788877665
No 50
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=52.40 E-value=63 Score=32.79 Aligned_cols=93 Identities=15% Similarity=0.139 Sum_probs=54.7
Q ss_pred EEEEeeccCcChHHHHHHHHHHh-c-----------------CCCeEEEEEEeeecCCCCCCCCCCCchhHHHHHHHHHh
Q 036516 554 HIVMLFIGGADDREALAYSRRMA-E-----------------HPNTSLTVVWFITTDQNRPSTEMPDDHELDNQAFDEFK 615 (709)
Q Consensus 554 ~V~~~f~Gg~ddreAl~~a~rma-~-----------------~~~~~ltvl~v~~~~~~~~~~~~~~~~~~d~~~l~~~~ 615 (709)
++++.|.||+|+--.|.++.+.. + .++.++.++++.+..+ -....++++++.
T Consensus 55 ~i~vafSGGKDS~VLL~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vv~iDtg~~----------fpet~~fv~~~~ 124 (306)
T 2wsi_A 55 EISFSYNGGKDCQVLLLLYLSCLWEYFFIKAQNSQFDFEFQSFPMQRLPTVFIDQEET----------FPTLENFVLETS 124 (306)
T ss_dssp SEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCCCEEEEECCCTTC----------CHHHHHHHHHHH
T ss_pred CEEEEecCCHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCeeEEEEeCCCC----------CHHHHHHHHHHH
Confidence 48999999999999999888763 1 1345678888765322 334567888887
Q ss_pred hhcCCC-cEEEEEEeecChhhHHHHHHhh---hcCCcEEEEecCCCC
Q 036516 616 DSMVGN-KIIFREEIVKDGIGTTQVIQAF---AETFDLFIVGKNHDP 658 (709)
Q Consensus 616 ~~~~~~-~v~y~e~~v~~g~~~~~~i~~~---~~~~DLiiVG~~~~~ 658 (709)
.++.-+ .+...+.....+ +-..+++. ....+-+++|.+.+.
T Consensus 125 ~~ygl~l~v~~~~~~~~~~--l~~~~~~~~k~~p~~~aii~G~Rrdd 169 (306)
T 2wsi_A 125 ERYCLSLYESQRQSGASVN--MADAFRDFIKIYPETEAIVIGIRHTD 169 (306)
T ss_dssp HHTTEEEEECCC-----CC--HHHHHHHHHHHCTTCCEEECCCCCCS
T ss_pred HHcCCCEEEEeCCcccccc--HHHHHHHHHhhCCCCcEEEEEEeccc
Confidence 765311 111111111111 22222222 245789999998864
No 51
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=52.37 E-value=23 Score=35.21 Aligned_cols=55 Identities=9% Similarity=0.038 Sum_probs=40.2
Q ss_pred EEEEeeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCCCCCCCCchhHHHHHHHHHhhhcC
Q 036516 554 HIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFITTDQNRPSTEMPDDHELDNQAFDEFKDSMV 619 (709)
Q Consensus 554 ~V~~~f~Gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~ 619 (709)
++++.|.||+|+--.|.++.+.... +.++.++++.+...+ ..+.++++++..++.
T Consensus 43 ~v~va~SGGkDS~vLL~ll~~~~~~-~~~i~vv~iDtg~~~----------~et~~~v~~~~~~~g 97 (261)
T 2oq2_A 43 HLFQTTAFGLTGLVTIDMLSKLSEK-YYMPELLFIDTLHHF----------PQTLTLKNEIEKKYY 97 (261)
T ss_dssp SEEEECCCCHHHHHHHHHHHHHTTT-SCCCEEEEECCSCBC----------HHHHHHHHHHHHHHT
T ss_pred CEEEEecCCHHHHHHHHHHHHhCcc-CCCeeEEEecCCCCC----------HHHHHHHHHHHHHhC
Confidence 4889999999999999999988765 556778887653222 234567787777654
No 52
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=52.04 E-value=20 Score=35.77 Aligned_cols=93 Identities=13% Similarity=0.156 Sum_probs=53.0
Q ss_pred CcChHHHHHHHHHHhcCCCe--EEEEEEeeecCCCCCCCCCCCchhHHHHHHHHHhhhcCCCcEEEEEEee---cChhhH
Q 036516 562 GADDREALAYSRRMAEHPNT--SLTVVWFITTDQNRPSTEMPDDHELDNQAFDEFKDSMVGNKIIFREEIV---KDGIGT 636 (709)
Q Consensus 562 g~ddreAl~~a~rma~~~~~--~ltvl~v~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~v~y~e~~v---~~g~~~ 636 (709)
.|.|.+|++.|.|+++..+. +++++.+=++ . .++.+++.... .-+++...+-.. -+...+
T Consensus 36 np~d~~ale~A~~Lke~~g~~~~V~av~~G~~-------------~-~~~~lr~ala~-GaD~vi~v~d~~~~~~~~~~~ 100 (264)
T 1o97_C 36 NEWDDFSLEEAMKIKESSDTDVEVVVVSVGPD-------------R-VDESLRKCLAK-GADRAVRVWDDAAEGSDAIVV 100 (264)
T ss_dssp CHHHHHHHHHHHHHHHHCSSCCEEEEEEESCG-------------G-GHHHHHHHHHT-TCSEEEEECCGGGTTCCHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCCceEEEEEeCch-------------h-HHHHHHHHHhc-CCCEEEEEcCcccccCCHHHH
Confidence 69999999999999986665 8888875321 0 11233333221 112443333111 122333
Q ss_pred HHHHHhhh--cCCcEEEEecCCCC-----CcccccccCcC
Q 036516 637 TQVIQAFA--ETFDLFIVGKNHDP-----CCKATLGLSEW 669 (709)
Q Consensus 637 ~~~i~~~~--~~~DLiiVG~~~~~-----~~~~~~gl~~w 669 (709)
..++.+.. .+||+|+.|++... -.|.+..+.+|
T Consensus 101 a~~La~~i~~~~~dlVl~G~~s~d~~~~~v~p~lA~~L~~ 140 (264)
T 1o97_C 101 GRILTEVIKKEAPDMVFAGVQSSDQAYASTGISVASYLNW 140 (264)
T ss_dssp HHHHHHHHHHHCCSEEEEESCCTTTCCCCHHHHHHHHHTC
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCchhhHHHHHHHHhCC
Confidence 34444432 36999999998732 24556666677
No 53
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=51.43 E-value=23 Score=31.61 Aligned_cols=60 Identities=13% Similarity=0.037 Sum_probs=42.0
Q ss_pred CChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEEEecCC
Q 036516 477 ATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGILVHRGQ 539 (709)
Q Consensus 477 ~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIlvdrg~ 539 (709)
....+.|.++++|++++.||+|...+. ||.........+.+.+++-++-+.|| .++|...
T Consensus 39 ~~~~~~l~~li~e~~v~~iVvGlP~~m--dGt~~~~~~~~~~f~~~L~~~~~lpV-~~~DERl 98 (138)
T 1nu0_A 39 TPDWNIIERLLKEWQPDEIIVGLPLNM--DGTEQPLTARARKFANRIHGRFGVEV-KLHDERL 98 (138)
T ss_dssp EECHHHHHHHHHHHCCSEEEEEEEECT--TSCBCHHHHHHHHHHHHHHHHHCCCE-EEEEEEC
T ss_pred chHHHHHHHHHHHcCCCEEEEecccCC--CcCcCHHHHHHHHHHHHHHHHhCCCE-EEEcCCc
Confidence 345789999999999999999986553 44432223346777777766678998 4555543
No 54
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=43.48 E-value=40 Score=36.16 Aligned_cols=96 Identities=11% Similarity=0.164 Sum_probs=60.9
Q ss_pred eEEEEeeccCcChHHHHHHHHHHhcC-CCeEEEEEEeeecCCCCCCCCCCCchhHHHHHHHHHhhhcCCCcEEEEEEee-
Q 036516 553 YHIVMLFIGGADDREALAYSRRMAEH-PNTSLTVVWFITTDQNRPSTEMPDDHELDNQAFDEFKDSMVGNKIIFREEIV- 630 (709)
Q Consensus 553 ~~V~~~f~Gg~ddreAl~~a~rma~~-~~~~ltvl~v~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~v~y~e~~v- 630 (709)
.+|++.+.||.|+--++.+..++.+. .+.+++++|+...- . .+.+.+.++++++..+..- .+...+..+
T Consensus 14 ~~vlVa~SGG~DS~~Ll~ll~~~~~~~~g~~v~avhvdhgl-------r-~~s~~~~~~v~~~~~~lgi-~~~v~~~~~~ 84 (433)
T 1ni5_A 14 RQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGL-------S-ANADAWVTHCENVCQQWQV-PLVVERVQLA 84 (433)
T ss_dssp SEEEEECCSBHHHHHHHHHHHHHHTTSTTCEEEEEEECCSC-------C-SSHHHHHHHHHHHHHHTTC-CEEEECCCCC
T ss_pred CEEEEEEcchHHHHHHHHHHHHHHHhcCCCeEEEEEEECCC-------C-cccHHHHHHHHHHHHHcCC-cEEEEEecCC
Confidence 36999999999999999999998877 88899999986521 1 1234566777777765421 121111111
Q ss_pred cChhhHHH--------HHHhhhcCCcEEEEecCCC
Q 036516 631 KDGIGTTQ--------VIQAFAETFDLFIVGKNHD 657 (709)
Q Consensus 631 ~~g~~~~~--------~i~~~~~~~DLiiVG~~~~ 657 (709)
+.|..+.. ++.+...++|-++.|-|.+
T Consensus 85 ~~~~~~e~~aR~~Ry~~l~~~a~~~~~i~tgH~~d 119 (433)
T 1ni5_A 85 QEGLGIEAQARQARYQAFARTLLPGEVLVTAQHLD 119 (433)
T ss_dssp CSSSTTTTHHHHHHHHHHHHTCCTTEEEECCCCHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhhCCeEEeeccch
Confidence 11211111 3445555689999987653
No 55
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=40.36 E-value=35 Score=34.81 Aligned_cols=58 Identities=16% Similarity=0.204 Sum_probs=43.2
Q ss_pred eEEEEeeccCcChHHHHHHHHHHhcCCCeE-EEEEEeeecCCCCCCCCCCCchhHHHHHHHHHhhhc
Q 036516 553 YHIVMLFIGGADDREALAYSRRMAEHPNTS-LTVVWFITTDQNRPSTEMPDDHELDNQAFDEFKDSM 618 (709)
Q Consensus 553 ~~V~~~f~Gg~ddreAl~~a~rma~~~~~~-ltvl~v~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 618 (709)
.+|++.+.||+|+--++.++.+..+..+.+ ++++++.... . .+...+.++++++..+.
T Consensus 25 ~~vlva~SGG~DS~~Ll~ll~~~~~~~g~~~v~av~vd~g~-------r-~~s~~~~~~v~~~a~~l 83 (317)
T 1wy5_A 25 RRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHML-------R-ESAERDEEFCKEFAKER 83 (317)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEECCS-------S-THHHHHHHHHHHHHHHH
T ss_pred CEEEEEecchHHHHHHHHHHHHHHHHcCCCEEEEEEEECCC-------C-cccHHHHHHHHHHHHHc
Confidence 369999999999999999999888777777 9999986521 1 12345667777777654
No 56
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=40.35 E-value=54 Score=29.52 Aligned_cols=60 Identities=12% Similarity=0.088 Sum_probs=42.4
Q ss_pred CCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEEEecC
Q 036516 476 YATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGILVHRG 538 (709)
Q Consensus 476 ~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIlvdrg 538 (709)
....++.|.++.++++++.|++|...+ .+|.........+.+.+++.++.++||-. +|..
T Consensus 40 ~~~~~~~l~~li~~~~~~~ivVGlP~~--~nGt~~~~~~~ar~f~~~L~~~~~lpV~~-vDEr 99 (150)
T 1vhx_A 40 GDYGLSRLSELIKDYTIDKIVLGFPKN--MNGTVGPRGEASQTFAKVLETTYNVPVVL-WDER 99 (150)
T ss_dssp TBCCHHHHHHHHTTSEEEEEEEECCCC--BTTBCCHHHHHHHHHHHHHHHHHCSCEEE-ECCS
T ss_pred hHHHHHHHHHHHHHcCCCEEEEeeeec--CCcchhHHHHHHHHHHHHHHHhhCCCEEE-ecCC
Confidence 457899999999999999999997643 24432222223577787877777999854 5543
No 57
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=35.74 E-value=36 Score=36.84 Aligned_cols=59 Identities=10% Similarity=0.018 Sum_probs=45.2
Q ss_pred eEEEEeeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCCCCCCCCchhHHHHHHHHHhhhc
Q 036516 553 YHIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFITTDQNRPSTEMPDDHELDNQAFDEFKDSM 618 (709)
Q Consensus 553 ~~V~~~f~Gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 618 (709)
.+|++.+.||+|+--+|.++.++.+..+.+++++|+...- ...+.+.+.++++++..+.
T Consensus 19 ~~vlVa~SGG~DS~~Ll~ll~~~~~~~~~~v~avhvdhgl-------rg~~s~~~~~~v~~~~~~l 77 (464)
T 3a2k_A 19 AAVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVDHMF-------RGRESEEEMEFVKRFCVER 77 (464)
T ss_dssp SBEEEECCSSHHHHHHHHHHHHHHHTTTCBCEEEEEECTT-------CTHHHHHHHHHHHHHHHHT
T ss_pred CEEEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEEEEECCC-------CccccHHHHHHHHHHHHHc
Confidence 3699999999999999999999988888899999987521 1112345667788877665
No 58
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=29.66 E-value=80 Score=28.51 Aligned_cols=38 Identities=24% Similarity=0.238 Sum_probs=32.2
Q ss_pred EEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccC
Q 036516 468 QHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGV 505 (709)
Q Consensus 468 ~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~ 505 (709)
.-.-.+-|...|+..|.++|++-++|+||-|..+..-.
T Consensus 91 DLIYsirPP~El~~~i~~lA~~v~adliI~pL~~E~~~ 128 (153)
T 2k4m_A 91 ALIYSIRPPAEIHSSLMRVADAVGARLIIKPLTGEDIV 128 (153)
T ss_dssp EEEEEESCCTTTHHHHHHHHHHHTCEEEEECBTTBCCC
T ss_pred CEEEEcCCCHHHHHHHHHHHHHcCCCEEEEcCCCCcCC
Confidence 34447889999999999999999999999999776543
No 59
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=28.83 E-value=94 Score=31.26 Aligned_cols=108 Identities=7% Similarity=0.032 Sum_probs=55.2
Q ss_pred chhHHHHHHHHHHHhcCcceEEEEEEEEccCCChh--HHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHH
Q 036516 446 SSTQLINAFTQFQRCYYGHVVVQHFTTIAPYATMH--DDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNV 523 (709)
Q Consensus 446 ~~~~i~~af~~~~~~~~~~v~v~~~~~vs~~~~~~--~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~V 523 (709)
...++.+.+++..++. +..+.... + ..+.. .+..+...++++|-||+-..... ..-..+.
T Consensus 77 ~~~~~~~gi~~~a~~~--g~~~~~~~--~-~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-------------~~~~~~~ 138 (338)
T 3dbi_A 77 YFSELLFHAARMAEEK--GRQLLLAD--G-KHSAEEERQAIQYLLDLRCDAIMIYPRFLS-------------VDEIDDI 138 (338)
T ss_dssp HHHHHHHHHHHHHHHT--TCEEEEEE--C-TTSHHHHHHHHHHHHHTTCSEEEECCSSSC-------------HHHHHHH
T ss_pred hHHHHHHHHHHHHHHC--CCEEEEEe--C-CCChHHHHHHHHHHHhCCCCEEEEeCCCCC-------------hHHHHHH
Confidence 4456677777665442 34443221 2 12322 23567777889998887432110 1123455
Q ss_pred hhcCCccEEEEEecCCCCCCCcccCCCcceEEEEeeccCcChHHHHHH-HHHHhcCCCeEEEEE
Q 036516 524 LHKAPCSVGILVHRGQNKSNRPVYTGELLYHIVMLFIGGADDREALAY-SRRMAEHPNTSLTVV 586 (709)
Q Consensus 524 l~~apCsVgIlvdrg~~~~~~~~~~~~~~~~V~~~f~Gg~ddreAl~~-a~rma~~~~~~ltvl 586 (709)
+++.++|| |++|+...... ...| +.|++++-.. +..|.++..-++-++
T Consensus 139 ~~~~~iPv-V~~~~~~~~~~--------~~~V------~~D~~~~~~~a~~~L~~~G~~~I~~i 187 (338)
T 3dbi_A 139 IDAHSQPI-MVLNRRLRKNS--------SHSV------WCDHKQTSFNAVAELINAGHQEIAFL 187 (338)
T ss_dssp HHHCSSCE-EEESSCCSSSG--------GGEE------CBCHHHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHcCCCCE-EEEcCCCCCCC--------CCEE------EEChHHHHHHHHHHHHHCCCCEEEEE
Confidence 67788897 56787543200 1122 5566666553 344555544444443
No 60
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=28.15 E-value=2.3e+02 Score=27.46 Aligned_cols=51 Identities=18% Similarity=0.173 Sum_probs=34.4
Q ss_pred EEEEeeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCCCCCCCCchhHHHHHHHHHhhhc
Q 036516 554 HIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFITTDQNRPSTEMPDDHELDNQAFDEFKDSM 618 (709)
Q Consensus 554 ~V~~~f~Gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 618 (709)
++++.|.||+|+--.|.++.+.. + ++.++++.+... -....++++++..++
T Consensus 47 ~v~va~SGG~DS~vLL~ll~~~~--~--~v~vv~idtg~~----------~~et~~~~~~~~~~~ 97 (252)
T 2o8v_A 47 EYVLSSSFGIQAAVSLHLVNQIR--P--DIPVILTDTGYL----------FPETYRFIDELTDKL 97 (252)
T ss_dssp CEEEECCCSTTHHHHHHHHHHHS--T--TCEEEECCCSCB----------CHHHHHHHHHHHHHT
T ss_pred CEEEEeCCCHHHHHHHHHHHHhC--C--CCeEEEecCCCC----------CHHHHHHHHHHHHHh
Confidence 48899999999998888888875 3 355677654221 122456777777665
No 61
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=27.62 E-value=40 Score=34.17 Aligned_cols=69 Identities=19% Similarity=0.300 Sum_probs=39.0
Q ss_pred HHHHHhcCCCe-EEEEEEeeecCCCCCCCCCCCchhHHHHHHHHHhhhcCCC-cEEEEEEeecChhhHHHHHHhhhcCCc
Q 036516 571 YSRRMAEHPNT-SLTVVWFITTDQNRPSTEMPDDHELDNQAFDEFKDSMVGN-KIIFREEIVKDGIGTTQVIQAFAETFD 648 (709)
Q Consensus 571 ~a~rma~~~~~-~ltvl~v~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~-~v~y~e~~v~~g~~~~~~i~~~~~~~D 648 (709)
.++.+.+++.+ +++++-+.+ .--+.-++++.+......++ |+ +..+.|| .+++++..+.||
T Consensus 97 ~~revlk~~~v~~v~~VEID~-----------~Vv~~a~~~lp~~~~~~~~dpRv---~v~~~Dg---~~~l~~~~~~yD 159 (294)
T 3o4f_A 97 MLREVTRHKNVESITMVEIDA-----------GVVSFCRQYLPNHNAGSYDDPRF---KLVIDDG---VNFVNQTSQTFD 159 (294)
T ss_dssp HHHHHHTCTTCCEEEEEESCH-----------HHHHHHHHHCHHHHTTGGGCTTE---EEEESCT---TTTTSCSSCCEE
T ss_pred HHHHHHHcCCcceEEEEcCCH-----------HHHHHHHhcCccccccccCCCcE---EEEechH---HHHHhhccccCC
Confidence 34556668764 788877422 11223334443333222223 54 5677888 456666667899
Q ss_pred EEEEecCC
Q 036516 649 LFIVGKNH 656 (709)
Q Consensus 649 LiiVG~~~ 656 (709)
+||+=-..
T Consensus 160 vIi~D~~d 167 (294)
T 3o4f_A 160 VIISDCTD 167 (294)
T ss_dssp EEEESCCC
T ss_pred EEEEeCCC
Confidence 99996543
No 62
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=27.34 E-value=2e+02 Score=27.78 Aligned_cols=110 Identities=7% Similarity=-0.035 Sum_probs=57.9
Q ss_pred hchhHHHHHHHHHHHhcCcceEEEEEEEEccCC-ChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHH
Q 036516 445 ASSTQLINAFTQFQRCYYGHVVVQHFTTIAPYA-TMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNV 523 (709)
Q Consensus 445 ~~~~~i~~af~~~~~~~~~~v~v~~~~~vs~~~-~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~V 523 (709)
....++.+.+++..++ .+..+..+ .+... .-..+..+...++++|-||+-.... .+ ... +-
T Consensus 21 ~~~~~~~~gi~~~a~~--~g~~~~~~--~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~--~~-----------~~~-~~ 82 (291)
T 3egc_A 21 VFFAEVASGVESEARH--KGYSVLLA--NTAEDIVREREAVGQFFERRVDGLILAPSEG--EH-----------DYL-RT 82 (291)
T ss_dssp HHHHHHHHHHHHHHHH--TTCEEEEE--ECTTCHHHHHHHHHHHHHTTCSEEEECCCSS--CC-----------HHH-HH
T ss_pred hHHHHHHHHHHHHHHH--CCCEEEEE--eCCCCHHHHHHHHHHHHHCCCCEEEEeCCCC--Ch-----------HHH-HH
Confidence 3456677777776654 23444332 12111 2234467777888999887754221 01 112 33
Q ss_pred hhcCCccEEEEEecCCCCCCCcccCCCcceEEEEeeccCcChHHHHHHH-HHHhcCCCeEEEEEE
Q 036516 524 LHKAPCSVGILVHRGQNKSNRPVYTGELLYHIVMLFIGGADDREALAYS-RRMAEHPNTSLTVVW 587 (709)
Q Consensus 524 l~~apCsVgIlvdrg~~~~~~~~~~~~~~~~V~~~f~Gg~ddreAl~~a-~rma~~~~~~ltvl~ 587 (709)
++++..|| |++|+.... . . +.++ +.|++++-..+ ..|.++..-++-++.
T Consensus 83 ~~~~~iPv-V~~~~~~~~-~-------~-----~~~V-~~D~~~~g~~a~~~L~~~G~~~i~~i~ 132 (291)
T 3egc_A 83 ELPKTFPI-VAVNRELRI-P-------G-----CGAV-LSENVRGARTAVEYLIARGHTRIGAIV 132 (291)
T ss_dssp SSCTTSCE-EEESSCCCC-T-------T-----CEEE-EECHHHHHHHHHHHHHHTTCCSEEEEC
T ss_pred hhccCCCE-EEEecccCC-C-------C-----CCEE-EECcHHHHHHHHHHHHHcCCCEEEEEe
Confidence 56778898 556775432 0 0 1223 46777766544 556666555555443
No 63
>2l0e_A Sodium/hydrogen exchanger 1; transmembrane helix, membrane protein, NHE1; NMR {Homo sapiens}
Probab=24.34 E-value=12 Score=24.67 Aligned_cols=27 Identities=11% Similarity=0.060 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHhcc
Q 036516 93 SSIAASVVVNSMTSLVVITGLLKELKM 119 (709)
Q Consensus 93 ~~~l~l~~~ls~Ts~~vv~~iL~el~l 119 (709)
..++.+|+++|.|.+..+..++++++.
T Consensus 4 ~~~llfGAiis~TDpVavlaif~~~~v 30 (33)
T 2l0e_A 4 KDNLLFGSIISAVDPVAVLAVFEEIHK 30 (33)
T ss_dssp CCCCTTHHHHTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHccCCChHHHHHHHHHcCC
Confidence 346788999999999888999999875
No 64
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=24.22 E-value=2.1e+02 Score=28.01 Aligned_cols=109 Identities=8% Similarity=0.038 Sum_probs=55.9
Q ss_pred chhHHHHHHHHHHHhcCcceEEEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhh
Q 036516 446 SSTQLINAFTQFQRCYYGHVVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLH 525 (709)
Q Consensus 446 ~~~~i~~af~~~~~~~~~~v~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~ 525 (709)
...++++.+++..++. +..+..... .....-..+..+...++++|-||+-..... +. ...+++.+
T Consensus 29 ~~~~~~~gi~~~a~~~--g~~~~~~~~-~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~---------~~---~~~~~l~~ 93 (303)
T 3kke_A 29 VFADMFSGVQMAASGH--STDVLLGQI-DAPPRGTQQLSRLVSEGRVDGVLLQRREDF---------DD---DMLAAVLE 93 (303)
T ss_dssp THHHHHHHHHHHHHHT--TCCEEEEEC-CSTTHHHHHHHHHHHSCSSSEEEECCCTTC---------CH---HHHHHHHT
T ss_pred HHHHHHHHHHHHHHHC--CCEEEEEeC-CCChHHHHHHHHHHHhCCCcEEEEecCCCC---------cH---HHHHHHhC
Confidence 4466777777766543 333332211 111123346777888899998877532111 00 03444434
Q ss_pred cCCccEEEEEecCCCCCCCcccCCCcceEEEEeeccCcChHHHHHHH-HHHhcCCCeEEEEEE
Q 036516 526 KAPCSVGILVHRGQNKSNRPVYTGELLYHIVMLFIGGADDREALAYS-RRMAEHPNTSLTVVW 587 (709)
Q Consensus 526 ~apCsVgIlvdrg~~~~~~~~~~~~~~~~V~~~f~Gg~ddreAl~~a-~rma~~~~~~ltvl~ 587 (709)
.+|| |++|+.... . ..++ +.|++++-..| ..|.++..-++-++.
T Consensus 94 --~iPv-V~i~~~~~~-~-------------~~~V-~~D~~~~g~~a~~~L~~~G~~~I~~i~ 138 (303)
T 3kke_A 94 --GVPA-VTINSRVPG-R-------------VGSV-ILDDQKGGGIATEHLITLGHSRIAFIS 138 (303)
T ss_dssp --TSCE-EEESCCCTT-C-------------CCEE-EECHHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred --CCCE-EEECCcCCC-C-------------CCEE-EECcHHHHHHHHHHHHHCCCCeEEEEe
Confidence 8887 667775431 1 1122 56676666544 455665544555443
No 65
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=23.92 E-value=3.2e+02 Score=22.81 Aligned_cols=83 Identities=20% Similarity=0.332 Sum_probs=58.1
Q ss_pred EEEEeeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCCCCCCCCchhHHHHHHHHHhhhcCCCcEEEEEEeecCh
Q 036516 554 HIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFITTDQNRPSTEMPDDHELDNQAFDEFKDSMVGNKIIFREEIVKDG 633 (709)
Q Consensus 554 ~V~~~f~Gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~v~y~e~~v~~g 633 (709)
.+++.|. .|.|.|.-..|=.+..++++.+++ .++ +.+...+-+++|..+-. .-++|+|.
T Consensus 3 qifvvfs---sdpeilkeivreikrqgvrvvlly---sdq---------dekrrrerleefekqgv------dvrtvedk 61 (162)
T 2l82_A 3 QIFVVFS---SDPEILKEIVREIKRQGVRVVLLY---SDQ---------DEKRRRERLEEFEKQGV------DVRTVEDK 61 (162)
T ss_dssp EEEEEEE---SCHHHHHHHHHHHHHTTCEEEEEE---CCS---------CHHHHHHHHHHHHTTTC------EEEECCSH
T ss_pred eEEEEec---CCHHHHHHHHHHHHhCCeEEEEEe---cCc---------hHHHHHHHHHHHHHcCC------ceeeeccH
Confidence 4777776 467788877777788899999988 222 24455667888887644 23678898
Q ss_pred hhHHHHHHhhh---cCCcEEEEecCCC
Q 036516 634 IGTTQVIQAFA---ETFDLFIVGKNHD 657 (709)
Q Consensus 634 ~~~~~~i~~~~---~~~DLiiVG~~~~ 657 (709)
+|--+-|+++= ...|.+++-++.+
T Consensus 62 edfrenireiwerypqldvvvivttdd 88 (162)
T 2l82_A 62 EDFRENIREIWERYPQLDVVVIVTTDD 88 (162)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEEEECCC
T ss_pred HHHHHHHHHHHHhCCCCcEEEEEecCc
Confidence 88888888874 4467777666543
No 66
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=23.37 E-value=4.7e+02 Score=24.57 Aligned_cols=110 Identities=14% Similarity=0.077 Sum_probs=56.6
Q ss_pred hchhHHHHHHHHHHHhcCcceEEEEEEEEccCCCh--hHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHH
Q 036516 445 ASSTQLINAFTQFQRCYYGHVVVQHFTTIAPYATM--HDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRN 522 (709)
Q Consensus 445 ~~~~~i~~af~~~~~~~~~~v~v~~~~~vs~~~~~--~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~ 522 (709)
....++.+.+++..++. +..+... -+ ..+. ..+..+...++++|-||+-...... +. .. +
T Consensus 15 ~~~~~~~~gi~~~a~~~--g~~~~~~--~~-~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~-~~-----------~~-~ 76 (272)
T 3o74_A 15 PSYARIAKQLEQGARAR--GYQLLIA--SS-DDQPDSERQLQQLFRARRCDALFVASCLPPE-DD-----------SY-R 76 (272)
T ss_dssp HHHHHHHHHHHHHHHHT--TCEEEEE--EC-TTCHHHHHHHHHHHHHTTCSEEEECCCCCSS-CC-----------HH-H
T ss_pred hhHHHHHHHHHHHHHHC--CCEEEEE--eC-CCCHHHHHHHHHHHHHcCCCEEEEecCcccc-HH-----------HH-H
Confidence 34566777777766543 3444332 12 1222 2356677778899988875322111 10 12 2
Q ss_pred HhhcCCccEEEEEecCCCCCCCcccCCCcceEEEEeeccCcChHHHHHH-HHHHhcCCCeEEEEEE
Q 036516 523 VLHKAPCSVGILVHRGQNKSNRPVYTGELLYHIVMLFIGGADDREALAY-SRRMAEHPNTSLTVVW 587 (709)
Q Consensus 523 Vl~~apCsVgIlvdrg~~~~~~~~~~~~~~~~V~~~f~Gg~ddreAl~~-a~rma~~~~~~ltvl~ 587 (709)
-++++..|| |++|+...... ..++ +.|++++-.. +..|.++..-++-++.
T Consensus 77 ~~~~~~iPv-V~~~~~~~~~~-------------~~~V-~~d~~~~~~~a~~~L~~~G~~~i~~i~ 127 (272)
T 3o74_A 77 ELQDKGLPV-IAIDRRLDPAH-------------FCSV-ISDDRDASRQLAASLLSSAPRSIALIG 127 (272)
T ss_dssp HHHHTTCCE-EEESSCCCTTT-------------CEEE-EECHHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred HHHHcCCCE-EEEccCCCccc-------------cCEE-EEchHHHHHHHHHHHHHCCCcEEEEEe
Confidence 345678887 56777543210 1222 4566666554 3555565545555543
No 67
>3gxq_A Putative regulator of transfer genes ARTA; ribbon-helix-helix, plasmid, DNA binding protein/DNA complex; HET: DNA; 2.35A {Staphylococcus aureus subsp}
Probab=22.84 E-value=55 Score=22.59 Aligned_cols=27 Identities=22% Similarity=0.373 Sum_probs=21.0
Q ss_pred cceEEEEEEEEccCCChhHHHHHHHhhcCcc
Q 036516 463 GHVVVQHFTTIAPYATMHDDVCTLALDKRVV 493 (709)
Q Consensus 463 ~~v~v~~~~~vs~~~~~~~dI~~~A~e~~~d 493 (709)
..|+.+- .++| +|-++|...|.|++.|
T Consensus 10 kkvslhl--lvdp--dmkdeiikyaqekdfd 36 (54)
T 3gxq_A 10 KKVSLHL--LVDP--DMKDEIIKYAQEKDFD 36 (54)
T ss_dssp CCEEEEE--EECH--HHHHHHHHHHHHHSTT
T ss_pred ceeEEEE--eeCC--chhHHHHHHHHHccch
Confidence 3455554 5786 9999999999998875
Done!