BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036517
(78 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%)
Query: 18 LTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNL 77
LTG +P + +L L NN+ T IP+ +GR L L L+ N SG+IP G+
Sbjct: 475 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 534
Query: 78 K 78
+
Sbjct: 535 R 535
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 18 LTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIP 71
++GS+P E GD L + L +NK IP+++ L +++L+ N LSG IP
Sbjct: 665 ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 30/47 (63%)
Query: 32 LQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNLK 78
LQ YL+NN T IP +L L+ L+L+ N LSG+IP+S G+L
Sbjct: 393 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS 439
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 3 PLYRSHLTILFRNL---YLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKL 59
P + ++ +++F ++ L+G +P E G +L + L +N + SIP+ +G L L
Sbjct: 623 PTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNIL 682
Query: 60 NLARNKLSGSIPTSFGNL 77
+L+ NKL G IP + L
Sbjct: 683 DLSSNKLDGRIPQAMSAL 700
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 32/64 (50%)
Query: 11 ILFRNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSI 70
I N LTG +P G +L + L NN + +IP LG LI L+L N +G+I
Sbjct: 492 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 551
Query: 71 PTSF 74
P +
Sbjct: 552 PAAM 555
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 20 GSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNLK 78
G P F ++ + + N + IP+ +G L LNL N +SGSIP G+L+
Sbjct: 619 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLR 677
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 27/59 (45%)
Query: 13 FRNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIP 71
+N TG +PP + L +L N + +IP SLG L L L N L G IP
Sbjct: 398 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP 456
Score = 32.3 bits (72), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 29/61 (47%)
Query: 18 LTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNL 77
L G +P E L+ L+ N T IP L L ++L+ N+L+G IP G L
Sbjct: 451 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 510
Query: 78 K 78
+
Sbjct: 511 E 511
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 27/60 (45%)
Query: 17 YLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGN 76
YL+G++P G L+ L N IP+ L L L L N L+G IP+ N
Sbjct: 426 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN 485
Score = 27.3 bits (59), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 17 YLTGSVPPEFGDSLHLQVFYLENNKRTDSIP-ESLGRFGCLIKLNLARNKLSGSIPTSFG 75
+ G+VPP FG L+ L +N + +P ++L + L L+L+ N+ SG +P S
Sbjct: 302 HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLT 361
Query: 76 NLK 78
NL
Sbjct: 362 NLS 364
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%)
Query: 18 LTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNL 77
LTG +P + +L L NN+ T IP+ +GR L L L+ N SG+IP G+
Sbjct: 478 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 537
Query: 78 K 78
+
Sbjct: 538 R 538
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 18 LTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIP 71
++GS+P E GD L + L +NK IP+++ L +++L+ N LSG IP
Sbjct: 668 ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 30/47 (63%)
Query: 32 LQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNLK 78
LQ YL+NN T IP +L L+ L+L+ N LSG+IP+S G+L
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS 442
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 3 PLYRSHLTILFRNL---YLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKL 59
P + ++ +++F ++ L+G +P E G +L + L +N + SIP+ +G L L
Sbjct: 626 PTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNIL 685
Query: 60 NLARNKLSGSIPTSFGNL 77
+L+ NKL G IP + L
Sbjct: 686 DLSSNKLDGRIPQAMSAL 703
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 32/64 (50%)
Query: 11 ILFRNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSI 70
I N LTG +P G +L + L NN + +IP LG LI L+L N +G+I
Sbjct: 495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554
Query: 71 PTSF 74
P +
Sbjct: 555 PAAM 558
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 20 GSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNLK 78
G P F ++ + + N + IP+ +G L LNL N +SGSIP G+L+
Sbjct: 622 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLR 680
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 27/59 (45%)
Query: 13 FRNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIP 71
+N TG +PP + L +L N + +IP SLG L L L N L G IP
Sbjct: 401 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP 459
Score = 32.3 bits (72), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 29/61 (47%)
Query: 18 LTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNL 77
L G +P E L+ L+ N T IP L L ++L+ N+L+G IP G L
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 513
Query: 78 K 78
+
Sbjct: 514 E 514
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 27/60 (45%)
Query: 17 YLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGN 76
YL+G++P G L+ L N IP+ L L L L N L+G IP+ N
Sbjct: 429 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN 488
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 20 GSVPPEFGDSLHLQVFYLENNKRTDSIP-ESLGRFGCLIKLNLARNKLSGSIPTSFGNLK 78
G+VPP FG L+ L +N + +P ++L + L L+L+ N+ SG +P S NL
Sbjct: 308 GAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS 367
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 6 RSHLTILFRNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCL-IKLNLARN 64
++ +T+ F L+G++PP +L + N+ + +IP+S G F L + ++RN
Sbjct: 125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN 184
Query: 65 KLSGSIPTSFGNL 77
+L+G IP +F NL
Sbjct: 185 RLTGKIPPTFANL 197
Score = 38.5 bits (88), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%)
Query: 18 LTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNL 77
L G +PP L Y+ + + +IP+ L + L+ L+ + N LSG++P S +L
Sbjct: 89 LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148
Score = 28.1 bits (61), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 25 EFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNLK 78
+ G S +L L NN+ ++P+ L + L LN++ N L G IP GNL+
Sbjct: 239 KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQ 291
>pdb|1B7F|A Chain A, Sxl-Lethal ProteinRNA COMPLEX
pdb|1B7F|B Chain B, Sxl-Lethal ProteinRNA COMPLEX
Length = 168
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 11 ILFRNLYLTGSVPPEFGDSLHLQVFYLENNKRT---DSIPESLGRFGCLIKLNLARNKLS 67
I RN L S G+S+ Y+ N RT D + G++G +++ N+ R+KL+
Sbjct: 68 ITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLT 127
Query: 68 G 68
G
Sbjct: 128 G 128
>pdb|3SXL|A Chain A, Sex-Lethal Rna Recognition Domains 1 And 2 From Drosophila
Melanogaster
pdb|3SXL|B Chain B, Sex-Lethal Rna Recognition Domains 1 And 2 From Drosophila
Melanogaster
pdb|3SXL|C Chain C, Sex-Lethal Rna Recognition Domains 1 And 2 From Drosophila
Melanogaster
Length = 184
Score = 30.8 bits (68), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 11 ILFRNLYLTGSVPPEFGDSLHLQVFYLENNKRT---DSIPESLGRFGCLIKLNLARNKLS 67
I RN L S G+S+ Y+ N RT D + G++G +++ N+ R+KL+
Sbjct: 79 ITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLT 138
Query: 68 G 68
G
Sbjct: 139 G 139
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 28.5 bits (62), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 16 LYLTGS----VPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIP 71
LYL G+ VP E + HL + L NN+ + +S L+ L L+ N+L P
Sbjct: 36 LYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPP 95
Query: 72 TSFGNLK 78
+F LK
Sbjct: 96 RTFDGLK 102
>pdb|1SXL|A Chain A, Resonance Assignments And Solution Structure Of The
Second Rna-Binding Domain Of Sex-Lethal Determined By
Multidimensional Heteronuclear Magnetic Resonance
Spectroscopy
Length = 97
Score = 28.1 bits (61), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 27 GDSLHLQVFYLENNKRT---DSIPESLGRFGCLIKLNLARNKLSG 68
G+S+ Y+ N RT D + G++G +++ N+ R+KL+G
Sbjct: 8 GESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTG 52
>pdb|3V9M|A Chain A, Phospholipase Acii4 From Australian King Brown Snake
pdb|3V9M|B Chain B, Phospholipase Acii4 From Australian King Brown Snake
Length = 118
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 44 DSIPESLGRFGCLIKLNLARNKLSGSIPTS 73
D+ E G+ GC KL L K +G++PT
Sbjct: 49 DNCYEQAGKKGCFPKLTLYSWKCTGNVPTC 78
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 15/69 (21%)
Query: 10 TILFRNL---YLTGSV----PPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLA 62
+IL NL LTGSV PP+ ++V L NN R SIP+ + L +LN+A
Sbjct: 429 SILVLNLSSNMLTGSVFRCLPPK------VKVLDLHNN-RIMSIPKDVTHLQALQELNVA 481
Query: 63 RNKLSGSIP 71
N+L S+P
Sbjct: 482 SNQL-KSVP 489
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 51 GRFGCLIKLNLARNKLSGSIPTSF 74
GR L+KL L RN+L+G P +F
Sbjct: 51 GRLPHLVKLELKRNQLTGIEPNAF 74
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 12 LFRNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIP 71
L RN LTG P F + H+Q L NK + + L LNL N++S +P
Sbjct: 61 LKRN-QLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMP 119
Query: 72 TSFGNL 77
SF +L
Sbjct: 120 GSFEHL 125
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.142 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,412,956
Number of Sequences: 62578
Number of extensions: 86501
Number of successful extensions: 195
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 153
Number of HSP's gapped (non-prelim): 41
length of query: 78
length of database: 14,973,337
effective HSP length: 47
effective length of query: 31
effective length of database: 12,032,171
effective search space: 372997301
effective search space used: 372997301
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)