Query 036517
Match_columns 78
No_of_seqs 134 out of 2388
Neff 10.9
Searched_HMMs 46136
Date Fri Mar 29 02:50:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036517.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036517hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03150 hypothetical protein; 99.4 1E-13 2.2E-18 85.7 4.3 75 2-76 434-512 (623)
2 PLN00113 leucine-rich repeat r 99.3 8.1E-12 1.8E-16 80.0 4.9 62 14-75 507-568 (968)
3 PF13855 LRR_8: Leucine rich r 99.2 6.4E-12 1.4E-16 56.7 2.3 58 9-66 3-61 (61)
4 PLN03150 hypothetical protein; 99.2 1.2E-11 2.6E-16 76.6 3.8 64 14-77 426-489 (623)
5 PLN00113 leucine-rich repeat r 99.2 2.3E-11 5.1E-16 77.9 3.9 59 14-72 172-230 (968)
6 PF12799 LRR_4: Leucine Rich r 99.0 9.2E-10 2E-14 46.6 2.9 40 30-71 1-40 (44)
7 KOG0617 Ras suppressor protein 98.9 9.4E-11 2E-15 63.1 -0.5 73 2-77 119-195 (264)
8 KOG0617 Ras suppressor protein 98.9 5.9E-10 1.3E-14 60.1 0.7 60 14-76 41-100 (264)
9 KOG0472 Leucine-rich repeat pr 98.8 1.4E-09 3.1E-14 64.7 1.0 61 14-77 236-297 (565)
10 PF13855 LRR_8: Leucine rich r 98.7 1.1E-08 2.3E-13 46.0 2.6 48 30-77 1-48 (61)
11 KOG0444 Cytoskeletal regulator 98.5 1.1E-08 2.4E-13 64.2 -0.9 73 2-77 214-290 (1255)
12 KOG0472 Leucine-rich repeat pr 98.4 8.2E-08 1.8E-12 57.5 1.3 53 14-67 489-541 (565)
13 KOG4237 Extracellular matrix p 98.4 3.7E-08 8.1E-13 58.6 -0.9 71 2-73 61-134 (498)
14 KOG0444 Cytoskeletal regulator 98.4 5.2E-08 1.1E-12 61.4 -0.4 72 2-76 95-171 (1255)
15 KOG0532 Leucine-rich repeat (L 98.4 8.5E-08 1.8E-12 59.3 0.3 69 2-74 181-253 (722)
16 KOG4194 Membrane glycoprotein 98.3 2E-07 4.3E-12 58.1 0.7 58 14-72 277-334 (873)
17 KOG0618 Serine/threonine phosp 98.2 2E-07 4.3E-12 60.2 -1.4 67 9-77 361-429 (1081)
18 KOG0618 Serine/threonine phosp 98.1 4.4E-07 9.6E-12 58.6 0.1 72 2-76 60-135 (1081)
19 PRK15387 E3 ubiquitin-protein 98.1 5.3E-07 1.2E-11 57.7 0.3 43 31-74 423-465 (788)
20 KOG4194 Membrane glycoprotein 98.1 5.7E-07 1.2E-11 56.2 -0.6 63 5-67 288-354 (873)
21 PF00560 LRR_1: Leucine Rich R 98.0 2.1E-06 4.6E-11 31.0 1.0 22 55-77 1-22 (22)
22 KOG4237 Extracellular matrix p 98.0 1.6E-06 3.4E-11 52.0 0.7 71 6-76 270-344 (498)
23 PF12799 LRR_4: Leucine Rich r 98.0 2.8E-06 6.2E-11 35.8 1.3 35 8-43 2-37 (44)
24 PF14580 LRR_9: Leucine-rich r 98.0 6.9E-06 1.5E-10 44.3 2.9 51 14-67 50-101 (175)
25 KOG4579 Leucine-rich repeat (L 98.0 6.4E-07 1.4E-11 46.9 -1.5 55 14-71 85-139 (177)
26 KOG0532 Leucine-rich repeat (L 98.0 2.2E-06 4.8E-11 53.3 0.5 70 2-75 90-163 (722)
27 KOG1259 Nischarin, modulator o 97.9 4.4E-06 9.6E-11 48.9 0.9 57 8-67 285-342 (490)
28 KOG4658 Apoptotic ATPase [Sign 97.8 4.9E-06 1.1E-10 54.1 0.6 51 26-77 567-617 (889)
29 PF14580 LRR_9: Leucine-rich r 97.7 3.8E-05 8.2E-10 41.5 2.9 53 14-67 72-126 (175)
30 PLN03210 Resistant to P. syrin 97.7 7.5E-05 1.6E-09 50.0 4.5 47 26-72 653-699 (1153)
31 COG4886 Leucine-rich repeat (L 97.7 1.6E-05 3.5E-10 47.2 1.1 57 14-73 148-204 (394)
32 PRK15370 E3 ubiquitin-protein 97.6 8.8E-05 1.9E-09 47.8 3.9 53 14-73 333-385 (754)
33 PRK15387 E3 ubiquitin-protein 97.6 3.5E-05 7.5E-10 49.8 2.1 21 55-76 423-443 (788)
34 PLN03210 Resistant to P. syrin 97.6 0.00016 3.4E-09 48.5 4.9 59 14-74 619-677 (1153)
35 KOG4658 Apoptotic ATPase [Sign 97.6 1.7E-05 3.8E-10 51.7 0.2 64 7-71 568-635 (889)
36 PRK15370 E3 ubiquitin-protein 97.6 0.00011 2.5E-09 47.3 3.7 38 32-73 243-280 (754)
37 PF00560 LRR_1: Leucine Rich R 97.5 3E-05 6.4E-10 27.9 0.6 21 31-52 1-21 (22)
38 KOG4579 Leucine-rich repeat (L 97.5 5.6E-06 1.2E-10 43.4 -2.4 59 14-75 61-120 (177)
39 PF13504 LRR_7: Leucine rich r 97.4 0.00011 2.3E-09 24.8 1.1 16 55-71 2-17 (17)
40 COG4886 Leucine-rich repeat (L 97.2 0.00013 2.8E-09 43.4 0.8 57 14-73 124-181 (394)
41 KOG1859 Leucine-rich repeat pr 97.1 3.4E-05 7.4E-10 49.7 -2.6 55 14-72 172-226 (1096)
42 smart00369 LRR_TYP Leucine-ric 97.0 0.00051 1.1E-08 25.4 1.5 19 54-73 2-20 (26)
43 smart00370 LRR Leucine-rich re 97.0 0.00051 1.1E-08 25.4 1.5 19 54-73 2-20 (26)
44 cd00116 LRR_RI Leucine-rich re 96.9 0.00013 2.8E-09 41.9 -1.1 16 52-67 163-178 (319)
45 KOG2739 Leucine-rich acidic nu 96.7 0.0014 3.1E-08 37.4 2.0 43 25-67 60-104 (260)
46 cd00116 LRR_RI Leucine-rich re 96.6 0.00035 7.6E-09 40.1 -0.8 36 32-67 110-150 (319)
47 KOG1259 Nischarin, modulator o 96.2 0.0015 3.3E-08 38.7 0.4 51 16-67 270-320 (490)
48 KOG0531 Protein phosphatase 1, 95.9 0.0036 7.9E-08 37.8 1.0 40 26-67 114-153 (414)
49 KOG2739 Leucine-rich acidic nu 95.7 0.0094 2E-07 34.2 2.1 58 8-67 66-129 (260)
50 KOG1644 U2-associated snRNP A' 95.6 0.017 3.6E-07 32.4 2.6 43 25-67 59-101 (233)
51 smart00364 LRR_BAC Leucine-ric 95.4 0.011 2.4E-07 22.1 1.2 17 55-72 3-19 (26)
52 KOG0531 Protein phosphatase 1, 95.0 0.015 3.3E-07 35.2 1.5 51 15-67 81-131 (414)
53 smart00365 LRR_SD22 Leucine-ri 94.6 0.034 7.3E-07 20.7 1.5 14 54-67 2-15 (26)
54 KOG1644 U2-associated snRNP A' 94.6 0.047 1E-06 30.7 2.6 53 14-67 72-126 (233)
55 PF13516 LRR_6: Leucine Rich r 94.5 0.029 6.3E-07 20.1 1.2 15 54-68 2-16 (24)
56 PRK15386 type III secretion pr 93.5 0.1 2.2E-06 32.3 2.8 40 31-74 73-114 (426)
57 KOG3665 ZYG-1-like serine/thre 93.4 0.039 8.3E-07 36.0 1.0 39 29-67 147-186 (699)
58 smart00368 LRR_RI Leucine rich 93.1 0.088 1.9E-06 19.7 1.5 14 54-67 2-15 (28)
59 KOG3207 Beta-tubulin folding c 93.0 0.028 6E-07 34.8 0.0 43 25-67 141-185 (505)
60 KOG1859 Leucine-rich repeat pr 92.9 0.023 5E-07 37.5 -0.4 51 14-67 195-267 (1096)
61 COG5238 RNA1 Ran GTPase-activa 92.7 0.1 2.2E-06 30.9 1.9 42 26-67 88-133 (388)
62 KOG3207 Beta-tubulin folding c 92.2 0.014 3.1E-07 36.0 -1.9 13 55-67 247-259 (505)
63 KOG0473 Leucine-rich repeat pr 91.6 0.0014 3E-08 37.5 -6.2 45 31-77 66-110 (326)
64 KOG2123 Uncharacterized conser 91.2 0.0098 2.1E-07 35.0 -3.2 41 27-68 60-102 (388)
65 PRK15386 type III secretion pr 89.6 0.35 7.6E-06 30.0 2.2 36 9-48 74-112 (426)
66 KOG2982 Uncharacterized conser 89.1 0.14 3.1E-06 30.7 0.4 38 29-67 70-110 (418)
67 KOG2982 Uncharacterized conser 88.4 0.5 1.1E-05 28.5 2.2 54 14-67 79-134 (418)
68 KOG3665 ZYG-1-like serine/thre 88.2 0.13 2.8E-06 33.7 -0.2 19 25-43 168-186 (699)
69 KOG1909 Ran GTPase-activating 87.7 0.17 3.7E-06 30.6 0.1 38 29-66 91-132 (382)
70 KOG1909 Ran GTPase-activating 86.8 0.26 5.6E-06 29.9 0.5 16 28-43 211-226 (382)
71 TIGR00864 PCC polycystin catio 86.4 0.67 1.5E-05 34.9 2.3 31 14-44 3-33 (2740)
72 KOG2120 SCF ubiquitin ligase, 81.7 0.53 1.1E-05 28.4 0.3 36 25-62 333-371 (419)
73 KOG2123 Uncharacterized conser 80.1 0.17 3.7E-06 30.1 -2.0 40 26-67 37-76 (388)
74 PF13306 LRR_5: Leucine rich r 79.1 6.2 0.00013 19.5 3.7 37 25-62 30-66 (129)
75 smart00367 LRR_CC Leucine-rich 76.4 2.3 5.1E-05 15.2 1.3 12 54-65 2-13 (26)
76 KOG3763 mRNA export factor TAP 48.8 12 0.00027 24.5 1.4 35 29-64 217-254 (585)
77 smart00446 LRRcap occurring C- 45.8 12 0.00025 13.9 0.6 15 49-63 8-22 (26)
78 KOG3864 Uncharacterized conser 41.7 6.6 0.00014 22.4 -0.4 11 54-64 151-161 (221)
79 TIGR00864 PCC polycystin catio 39.3 22 0.00049 27.9 1.6 33 36-68 1-33 (2740)
80 TIGR02167 Liste_lipo_26 bacter 31.1 21 0.00046 13.0 0.3 12 51-62 3-14 (26)
81 cd01262 PH_PDK1 3-Phosphoinosi 22.3 43 0.00093 16.4 0.6 18 54-71 26-43 (89)
No 1
>PLN03150 hypothetical protein; Provisional
Probab=99.45 E-value=1e-13 Score=85.68 Aligned_cols=75 Identities=40% Similarity=0.587 Sum_probs=64.7
Q ss_pred CCcccchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCcC
Q 036517 2 IPLYRSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGN 76 (78)
Q Consensus 2 ~p~~~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~ 76 (78)
+|..+..++.|+ ++|.+.|.+|..+..+++|+.|++++|.+.|.+|+.++.+++|+.|++++|.+.|.+|..++.
T Consensus 434 ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~ 512 (623)
T PLN03150 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGG 512 (623)
T ss_pred CCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhh
Confidence 455666666665 889999999999999999999999999999999999999999999999999999999987654
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.27 E-value=8.1e-12 Score=79.98 Aligned_cols=62 Identities=32% Similarity=0.574 Sum_probs=38.0
Q ss_pred CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCc
Q 036517 14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFG 75 (78)
Q Consensus 14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~ 75 (78)
++|.+.+.+|+.+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+.
T Consensus 507 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 568 (968)
T PLN00113 507 SENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLG 568 (968)
T ss_pred cCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHh
Confidence 55666666666666666666666666666666666666666666666666666655555443
No 3
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.23 E-value=6.4e-12 Score=56.68 Aligned_cols=58 Identities=31% Similarity=0.358 Sum_probs=49.7
Q ss_pred hhhcc-CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcc
Q 036517 9 LTILF-RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKL 66 (78)
Q Consensus 9 l~~l~-~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l 66 (78)
++.|. ++|.++...+..|..+++|+.+++++|.+....+..|..+++|++|++++|++
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 45555 88899966667899999999999999999966667899999999999999975
No 4
>PLN03150 hypothetical protein; Provisional
Probab=99.22 E-value=1.2e-11 Score=76.64 Aligned_cols=64 Identities=39% Similarity=0.569 Sum_probs=60.4
Q ss_pred CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCcCC
Q 036517 14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNL 77 (78)
Q Consensus 14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l 77 (78)
++|.+.+.+|..+..+++|+.|++++|.+.|.+|..++.+++|+.|++++|.+.|.+|..++++
T Consensus 426 ~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L 489 (623)
T PLN03150 426 DNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQL 489 (623)
T ss_pred CCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcC
Confidence 7888899999999999999999999999999999999999999999999999999999887765
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.18 E-value=2.3e-11 Score=77.91 Aligned_cols=59 Identities=31% Similarity=0.478 Sum_probs=24.7
Q ss_pred CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCC
Q 036517 14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPT 72 (78)
Q Consensus 14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~ 72 (78)
++|.+.+.+|..+..+++|++|++++|.+.+.+|..++.+.+|++|++++|.+.+.+|.
T Consensus 172 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~ 230 (968)
T PLN00113 172 GGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPY 230 (968)
T ss_pred ccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCCh
Confidence 34444444444444444444444444444433444444444444444444444333333
No 6
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.96 E-value=9.2e-10 Score=46.65 Aligned_cols=40 Identities=35% Similarity=0.477 Sum_probs=33.8
Q ss_pred CCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccC
Q 036517 30 LHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIP 71 (78)
Q Consensus 30 ~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p 71 (78)
++|++|++++|.++ .+|..++.+++|+.|++++|.++ .++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~-~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS-DIS 40 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS-BEG
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC-CCc
Confidence 47899999999999 78888999999999999999988 654
No 7
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.94 E-value=9.4e-11 Score=63.12 Aligned_cols=73 Identities=27% Similarity=0.470 Sum_probs=58.4
Q ss_pred CCcccchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCcCC
Q 036517 2 IPLYRSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNL 77 (78)
Q Consensus 2 ~p~~~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l 77 (78)
+|..|..|+.|+ +.|.+. .+|..++++++|+.|.+..|.+- .+|..++.+.+|+.|.+.+|++. .+|++++.+
T Consensus 119 lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l 195 (264)
T KOG0617|consen 119 LPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANL 195 (264)
T ss_pred CCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhh
Confidence 566666666666 677777 67888888888888888888877 78888888888888888888888 888877754
No 8
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.86 E-value=5.9e-10 Score=60.11 Aligned_cols=60 Identities=33% Similarity=0.548 Sum_probs=31.8
Q ss_pred CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCcC
Q 036517 14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGN 76 (78)
Q Consensus 14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~ 76 (78)
++|.++ .+|+.+..+.+|+.|++++|.+. ++|..+..++.|+.|.+.-|++. .+|..||.
T Consensus 41 SHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs 100 (264)
T KOG0617|consen 41 SHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGS 100 (264)
T ss_pred ccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCC
Confidence 555555 44555555555555555555555 55555555555555555555554 44554444
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.80 E-value=1.4e-09 Score=64.69 Aligned_cols=61 Identities=31% Similarity=0.463 Sum_probs=52.5
Q ss_pred CCceeeecCCcccc-CCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCcCC
Q 036517 14 RNLYLTGSVPPEFG-DSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNL 77 (78)
Q Consensus 14 ~~n~~~~~~p~~~~-~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l 77 (78)
+.|.+. .+|.+.. .+.++..||+..|+++ ++|+.+..+.+|.+||+++|.++ .+|.++|++
T Consensus 236 g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl 297 (565)
T KOG0472|consen 236 GENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL 297 (565)
T ss_pred cccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc
Confidence 455555 6676655 7899999999999999 99999999999999999999999 899998876
No 10
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.74 E-value=1.1e-08 Score=46.04 Aligned_cols=48 Identities=35% Similarity=0.509 Sum_probs=39.3
Q ss_pred CCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCcCC
Q 036517 30 LHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNL 77 (78)
Q Consensus 30 ~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l 77 (78)
++|+.|++++|.+....+..|..+++|++|++++|.++..-|..|..+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l 48 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNL 48 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCC
Confidence 468999999999995555789999999999999999994444566655
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.51 E-value=1.1e-08 Score=64.23 Aligned_cols=73 Identities=30% Similarity=0.349 Sum_probs=42.2
Q ss_pred CCcccchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCcCC
Q 036517 2 IPLYRSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNL 77 (78)
Q Consensus 2 ~p~~~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l 77 (78)
+|.++..+..|. +.|.+. .+|+.+..+++|+.|++|+|.++ ++.-..+...++++|+++.|.+. .+|..+.++
T Consensus 214 ~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL 290 (1255)
T KOG0444|consen 214 IPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKL 290 (1255)
T ss_pred CCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhh
Confidence 455555555554 666666 56666666777777777776666 44333444445555555555555 555554443
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.43 E-value=8.2e-08 Score=57.47 Aligned_cols=53 Identities=26% Similarity=0.339 Sum_probs=45.5
Q ss_pred CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517 14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS 67 (78)
Q Consensus 14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~ 67 (78)
+.|++...-+..+..|.+|..||+.+|.+. .+|..+++|++|++|++++|.+.
T Consensus 489 s~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 489 SNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 457776444444899999999999999999 89999999999999999999997
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.39 E-value=3.7e-08 Score=58.58 Aligned_cols=71 Identities=17% Similarity=0.270 Sum_probs=55.2
Q ss_pred CCcccc-hhhhcc-CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEE-EcccCcceeccCCC
Q 036517 2 IPLYRS-HLTILF-RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKL-NLARNKLSGSIPTS 73 (78)
Q Consensus 2 ~p~~~~-~l~~l~-~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L-~l~~n~l~~~~p~~ 73 (78)
||..+. ..+.++ ..|.++...+.+|..+++|+.||+++|.++..-|..|.++.++..| +.++|+|+ .+|..
T Consensus 61 VP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~ 134 (498)
T KOG4237|consen 61 VPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKG 134 (498)
T ss_pred CcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhh
Confidence 555553 344555 8899996666679999999999999999997788999999888665 45558998 77753
No 14
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.38 E-value=5.2e-08 Score=61.36 Aligned_cols=72 Identities=25% Similarity=0.293 Sum_probs=44.2
Q ss_pred CCcccchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCc-hhhhCCCCCCEEEcccCcceeccCCCCcC
Q 036517 2 IPLYRSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIP-ESLGRFGCLIKLNLARNKLSGSIPTSFGN 76 (78)
Q Consensus 2 ~p~~~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~ 76 (78)
||..+.++..|. ++|.+. ..|..+...+++-.|++|+|.+. .+| ..|.+++-|-.||+++|++. .+|+++.+
T Consensus 95 iP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RR 171 (1255)
T KOG0444|consen 95 IPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRR 171 (1255)
T ss_pred CCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHH
Confidence 455555544443 666666 56666666666666666666666 444 34566666677777777776 66665544
No 15
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.37 E-value=8.5e-08 Score=59.27 Aligned_cols=69 Identities=28% Similarity=0.304 Sum_probs=55.4
Q ss_pred CCcccchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCC
Q 036517 2 IPLYRSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSF 74 (78)
Q Consensus 2 ~p~~~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~ 74 (78)
+|+.++.++.|+ ..|++. .+|+++..++ |..||+++|++. .+|-.|.+|..|++|-|.+|.++ +-|.++
T Consensus 181 lpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqI 253 (722)
T KOG0532|consen 181 LPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQI 253 (722)
T ss_pred chHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHH
Confidence 566777777776 667777 6777777444 788999999999 88999999999999999999998 666554
No 16
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.30 E-value=2e-07 Score=58.14 Aligned_cols=58 Identities=16% Similarity=0.042 Sum_probs=35.8
Q ss_pred CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCC
Q 036517 14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPT 72 (78)
Q Consensus 14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~ 72 (78)
+.|++...--.++.+++.|+.|+++.|.++...++.|..+++|..|+|++|+++ .+++
T Consensus 277 ~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~-~l~~ 334 (873)
T KOG4194|consen 277 ETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT-RLDE 334 (873)
T ss_pred ccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccc-cCCh
Confidence 555555444445556666666666666666666666666666666666666666 5443
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.15 E-value=2e-07 Score=60.15 Aligned_cols=67 Identities=37% Similarity=0.503 Sum_probs=53.7
Q ss_pred hhhcc-CCceeeecCCccccCCCCCceEecccCcCCCCCch-hhhCCCCCCEEEcccCcceeccCCCCcCC
Q 036517 9 LTILF-RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPE-SLGRFGCLIKLNLARNKLSGSIPTSFGNL 77 (78)
Q Consensus 9 l~~l~-~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l 77 (78)
+..|. .+|+++...-+.+..+.+|+.|++++|++. .+|. .+.++..|+.|++++|+++ .+|..+..+
T Consensus 361 Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~ 429 (1081)
T KOG0618|consen 361 LQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANL 429 (1081)
T ss_pred HHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhh
Confidence 34444 889998888888889999999999999998 6664 4678889999999999998 888765443
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.15 E-value=4.4e-07 Score=58.62 Aligned_cols=72 Identities=29% Similarity=0.424 Sum_probs=58.1
Q ss_pred CCcccchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCcC
Q 036517 2 IPLYRSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGN 76 (78)
Q Consensus 2 ~p~~~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~ 76 (78)
.|..+..+.+|. +.|.+. ..|.+...+.+|+++++.+|.+. .+|..+..+.+|++||+++|.+. .+|..+..
T Consensus 60 fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~ 135 (1081)
T KOG0618|consen 60 FPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEV 135 (1081)
T ss_pred CCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHh
Confidence 455555555555 677776 67888889999999999999988 88999999999999999999988 88876543
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.14 E-value=5.3e-07 Score=57.71 Aligned_cols=43 Identities=28% Similarity=0.293 Sum_probs=32.7
Q ss_pred CCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCC
Q 036517 31 HLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSF 74 (78)
Q Consensus 31 ~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~ 74 (78)
.|+.|++++|.++ .+|..+..+++|+.+++++|.+++..|..+
T Consensus 423 ~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 423 GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred hhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 4566777777777 678888888888999999998887665543
No 20
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.07 E-value=5.7e-07 Score=56.19 Aligned_cols=63 Identities=21% Similarity=0.119 Sum_probs=38.8
Q ss_pred ccchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517 5 YRSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS 67 (78)
Q Consensus 5 ~~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~ 67 (78)
++..++.|+ +.|.+.+..++.+.-.++|.+|+++.|+++..-+..|..+.+|+.|.|++|++.
T Consensus 288 ~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~ 354 (873)
T KOG4194|consen 288 WLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSID 354 (873)
T ss_pred cccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchH
Confidence 344444444 777777777777777777888888887777333344555555555555555444
No 21
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=98.04 E-value=2.1e-06 Score=30.99 Aligned_cols=22 Identities=55% Similarity=0.765 Sum_probs=14.4
Q ss_pred CCCEEEcccCcceeccCCCCcCC
Q 036517 55 CLIKLNLARNKLSGSIPTSFGNL 77 (78)
Q Consensus 55 ~L~~L~l~~n~l~~~~p~~~~~l 77 (78)
+|++||+++|.++ .+|..|++|
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT-
T ss_pred CccEEECCCCcCE-eCChhhcCC
Confidence 3567777777777 777766653
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.03 E-value=1.6e-06 Score=51.95 Aligned_cols=71 Identities=24% Similarity=0.222 Sum_probs=54.1
Q ss_pred cchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCcC
Q 036517 6 RSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGN 76 (78)
Q Consensus 6 ~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~ 76 (78)
|..++.|+ ++|.+++.-+.+|.....++.|.+..|++...-...|.++..|++|+|.+|+++-..|..|.+
T Consensus 270 f~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~ 344 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQT 344 (498)
T ss_pred HhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccc
Confidence 34455555 888888777777888888888888888887444566888999999999999999666665544
No 23
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.02 E-value=2.8e-06 Score=35.84 Aligned_cols=35 Identities=31% Similarity=0.431 Sum_probs=28.4
Q ss_pred hhhhcc-CCceeeecCCccccCCCCCceEecccCcCC
Q 036517 8 HLTILF-RNLYLTGSVPPEFGDSLHLQVFYLENNKRT 43 (78)
Q Consensus 8 ~l~~l~-~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~ 43 (78)
+++.|. ++|.++ .+|+.+..+++|+.|++++|.++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 355566 889999 67777999999999999999988
No 24
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.01 E-value=6.9e-06 Score=44.30 Aligned_cols=51 Identities=31% Similarity=0.356 Sum_probs=18.5
Q ss_pred CCceeeecCCccccCCCCCceEecccCcCCCCCchhh-hCCCCCCEEEcccCcce
Q 036517 14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESL-GRFGCLIKLNLARNKLS 67 (78)
Q Consensus 14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~-~~l~~L~~L~l~~n~l~ 67 (78)
++|.++. +. .+..++.|+.|++++|.++ .+.+.+ ..+++|+.|++++|++.
T Consensus 50 s~N~I~~-l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~ 101 (175)
T PF14580_consen 50 SNNQITK-LE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKIS 101 (175)
T ss_dssp TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---
T ss_pred CCCCCcc-cc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCC
Confidence 7777773 32 4666777777777777777 444444 35777777777777776
No 25
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.96 E-value=6.4e-07 Score=46.87 Aligned_cols=55 Identities=22% Similarity=0.207 Sum_probs=36.3
Q ss_pred CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccC
Q 036517 14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIP 71 (78)
Q Consensus 14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p 71 (78)
++|.++ .+|+++..|+.|+.++++.|.+. ..|..+..+.++..|+..+|... .+|
T Consensus 85 ~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid 139 (177)
T KOG4579|consen 85 ANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EID 139 (177)
T ss_pred chhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCc
Confidence 666666 56666777777777777777776 56666666666667766666554 444
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.95 E-value=2.2e-06 Score=53.29 Aligned_cols=70 Identities=23% Similarity=0.360 Sum_probs=42.0
Q ss_pred CCcccchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCc
Q 036517 2 IPLYRSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFG 75 (78)
Q Consensus 2 ~p~~~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~ 75 (78)
+|.++..+..|. ..|.+- .+|..+.++..|.+++++.|.++ .+|..+..++ |+.|-+++|+++ .+|+.++
T Consensus 90 lp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig 163 (722)
T KOG0532|consen 90 LPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIG 163 (722)
T ss_pred CchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccc
Confidence 344444443443 344444 56666777777777777777766 6666665555 666666666666 6666655
No 27
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.88 E-value=4.4e-06 Score=48.91 Aligned_cols=57 Identities=23% Similarity=0.246 Sum_probs=46.1
Q ss_pred hhhhcc-CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517 8 HLTILF-RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS 67 (78)
Q Consensus 8 ~l~~l~-~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~ 67 (78)
.++.+. ++|.++ .+.+++.-.+.++.|+++.|.+. .+.. +..+++|+.||+++|.+.
T Consensus 285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~n-La~L~~L~~LDLS~N~Ls 342 (490)
T KOG1259|consen 285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQN-LAELPQLQLLDLSGNLLA 342 (490)
T ss_pred hhhhccccccchh-hhhhhhhhccceeEEecccccee-eehh-hhhcccceEeecccchhH
Confidence 455555 888888 67778888899999999999887 4433 788899999999999877
No 28
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.84 E-value=4.9e-06 Score=54.13 Aligned_cols=51 Identities=31% Similarity=0.519 Sum_probs=36.7
Q ss_pred ccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCcCC
Q 036517 26 FGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNL 77 (78)
Q Consensus 26 ~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l 77 (78)
|..++.|+.||+++|.--+.+|+.++.+.+|++|++++..++ .+|..++++
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~L 617 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNL 617 (889)
T ss_pred HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHH
Confidence 666777777777776655577777777777777777777777 777666554
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.73 E-value=3.8e-05 Score=41.47 Aligned_cols=53 Identities=30% Similarity=0.330 Sum_probs=26.7
Q ss_pred CCceeeecCCccc-cCCCCCceEecccCcCCCCC-chhhhCCCCCCEEEcccCcce
Q 036517 14 RNLYLTGSVPPEF-GDSLHLQVFYLENNKRTDSI-PESLGRFGCLIKLNLARNKLS 67 (78)
Q Consensus 14 ~~n~~~~~~p~~~-~~~~~L~~l~l~~n~~~~~~-p~~~~~l~~L~~L~l~~n~l~ 67 (78)
++|.++ .+.+.+ ..+++|+.|++++|++...- -..+..+++|+.|++.+|.+.
T Consensus 72 ~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 72 SNNRIS-SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp -SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CCCCCC-ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 899998 455555 36899999999999997321 145678899999999999987
No 30
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.71 E-value=7.5e-05 Score=49.95 Aligned_cols=47 Identities=19% Similarity=0.286 Sum_probs=25.2
Q ss_pred ccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCC
Q 036517 26 FGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPT 72 (78)
Q Consensus 26 ~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~ 72 (78)
+..+++|+.|++++|.....+|..++.+++|+.|++++|.....+|.
T Consensus 653 ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~ 699 (1153)
T PLN03210 653 LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPT 699 (1153)
T ss_pred cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCC
Confidence 44455555555555443335566666666666666665432225554
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.69 E-value=1.6e-05 Score=47.18 Aligned_cols=57 Identities=25% Similarity=0.405 Sum_probs=35.0
Q ss_pred CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCC
Q 036517 14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTS 73 (78)
Q Consensus 14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~ 73 (78)
+.|.+. .+|..++.++.|+.|+++.|.+. .+|...+..+.|+.|++++|.+. .+|..
T Consensus 148 ~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~ 204 (394)
T COG4886 148 SDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPE 204 (394)
T ss_pred cccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchh
Confidence 555555 44445666666666666666666 55555555666666666666666 55553
No 32
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.64 E-value=8.8e-05 Score=47.83 Aligned_cols=53 Identities=32% Similarity=0.511 Sum_probs=29.8
Q ss_pred CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCC
Q 036517 14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTS 73 (78)
Q Consensus 14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~ 73 (78)
++|.++ .+|..+. ++|+.|++++|.+. .+|..+. +.|+.|++++|.++ .+|..
T Consensus 333 s~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~ 385 (754)
T PRK15370 333 GENALT-SLPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPEN 385 (754)
T ss_pred cCCccc-cCChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHh
Confidence 444444 2444332 46666777766666 4555442 46667777776666 55543
No 33
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.63 E-value=3.5e-05 Score=49.76 Aligned_cols=21 Identities=33% Similarity=0.570 Sum_probs=10.7
Q ss_pred CCCEEEcccCcceeccCCCCcC
Q 036517 55 CLIKLNLARNKLSGSIPTSFGN 76 (78)
Q Consensus 55 ~L~~L~l~~n~l~~~~p~~~~~ 76 (78)
.|+.|++++|.++ .+|..+++
T Consensus 423 ~L~~L~Ls~NqLt-~LP~sl~~ 443 (788)
T PRK15387 423 GLLSLSVYRNQLT-RLPESLIH 443 (788)
T ss_pred hhhhhhhccCccc-ccChHHhh
Confidence 3444555555555 55554443
No 34
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.61 E-value=0.00016 Score=48.48 Aligned_cols=59 Identities=20% Similarity=0.174 Sum_probs=27.4
Q ss_pred CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCC
Q 036517 14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSF 74 (78)
Q Consensus 14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~ 74 (78)
.++.+. .++..+..+++|+.++++++.....+|. +..+++|+.|++++|.....+|..+
T Consensus 619 ~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si 677 (1153)
T PLN03210 619 QGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSI 677 (1153)
T ss_pred cCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhh
Confidence 444444 3444445555555555554432224442 4445555555555543323445443
No 35
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.57 E-value=1.7e-05 Score=51.69 Aligned_cols=64 Identities=28% Similarity=0.406 Sum_probs=51.5
Q ss_pred chhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccC
Q 036517 7 SHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIP 71 (78)
Q Consensus 7 ~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p 71 (78)
..++.|. ++|.--+.+|..++.+-+|++|++++..+. .+|..++++..|.+|++..+.-...+|
T Consensus 568 ~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~ 635 (889)
T KOG4658|consen 568 RSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIP 635 (889)
T ss_pred hhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheecccccccccccc
Confidence 3455554 666666789999999999999999999999 899999999999999998775443443
No 36
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.56 E-value=0.00011 Score=47.34 Aligned_cols=38 Identities=37% Similarity=0.543 Sum_probs=18.7
Q ss_pred CceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCC
Q 036517 32 LQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTS 73 (78)
Q Consensus 32 L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~ 73 (78)
|+.|++++|.+. .+|..+. .+|+.|++++|.+. .+|..
T Consensus 243 L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~ 280 (754)
T PRK15370 243 IQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPEN 280 (754)
T ss_pred ccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccc
Confidence 344444444444 3333332 35666666666666 55543
No 37
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=97.55 E-value=3e-05 Score=27.90 Aligned_cols=21 Identities=38% Similarity=0.531 Sum_probs=17.5
Q ss_pred CCceEecccCcCCCCCchhhhC
Q 036517 31 HLQVFYLENNKRTDSIPESLGR 52 (78)
Q Consensus 31 ~L~~l~l~~n~~~~~~p~~~~~ 52 (78)
+|++|++++|.++ .+|..|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 4789999999999 88877765
No 38
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.48 E-value=5.6e-06 Score=43.43 Aligned_cols=59 Identities=25% Similarity=0.323 Sum_probs=47.9
Q ss_pred CCceeeecCCccccC-CCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCc
Q 036517 14 RNLYLTGSVPPEFGD-SLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFG 75 (78)
Q Consensus 14 ~~n~~~~~~p~~~~~-~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~ 75 (78)
++|.+. .+|+.|.. ++.+..+++++|.+. .+|+.+..++.|+.++++.|.+. ..|..+.
T Consensus 61 s~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~ 120 (177)
T KOG4579|consen 61 SDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIA 120 (177)
T ss_pred ccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHH
Confidence 778877 56776664 457889999999999 88988999999999999999988 6665543
No 39
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=97.39 E-value=0.00011 Score=24.81 Aligned_cols=16 Identities=44% Similarity=0.752 Sum_probs=7.5
Q ss_pred CCCEEEcccCcceeccC
Q 036517 55 CLIKLNLARNKLSGSIP 71 (78)
Q Consensus 55 ~L~~L~l~~n~l~~~~p 71 (78)
+|+.|++++|+++ .+|
T Consensus 2 ~L~~L~l~~n~L~-~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLT-SLP 17 (17)
T ss_dssp T-SEEEETSS--S-SE-
T ss_pred ccCEEECCCCCCC-CCc
Confidence 4666666666665 443
No 40
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.20 E-value=0.00013 Score=43.37 Aligned_cols=57 Identities=33% Similarity=0.469 Sum_probs=48.3
Q ss_pred CCceeeecCCccccCCC-CCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCC
Q 036517 14 RNLYLTGSVPPEFGDSL-HLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTS 73 (78)
Q Consensus 14 ~~n~~~~~~p~~~~~~~-~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~ 73 (78)
.+|.++ .++....... +|+.++++.|.+. .+|..++.++.|+.|++++|.+. .+|..
T Consensus 124 ~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~ 181 (394)
T COG4886 124 DNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKL 181 (394)
T ss_pred CCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhh
Confidence 677777 6777777774 9999999999999 77778899999999999999998 77764
No 41
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.07 E-value=3.4e-05 Score=49.71 Aligned_cols=55 Identities=25% Similarity=0.250 Sum_probs=40.9
Q ss_pred CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCC
Q 036517 14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPT 72 (78)
Q Consensus 14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~ 72 (78)
++|.+. ....++.-++.|+.|++++|+++ ... .+..++.|.+||+++|.+. .+|.
T Consensus 172 syN~L~-~mD~SLqll~ale~LnLshNk~~-~v~-~Lr~l~~LkhLDlsyN~L~-~vp~ 226 (1096)
T KOG1859|consen 172 SYNRLV-LMDESLQLLPALESLNLSHNKFT-KVD-NLRRLPKLKHLDLSYNCLR-HVPQ 226 (1096)
T ss_pred chhhHH-hHHHHHHHHHHhhhhccchhhhh-hhH-HHHhcccccccccccchhc-cccc
Confidence 556665 44455666788888899999888 333 6778888899999998888 6664
No 42
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=97.04 E-value=0.00051 Score=25.43 Aligned_cols=19 Identities=42% Similarity=0.625 Sum_probs=11.9
Q ss_pred CCCCEEEcccCcceeccCCC
Q 036517 54 GCLIKLNLARNKLSGSIPTS 73 (78)
Q Consensus 54 ~~L~~L~l~~n~l~~~~p~~ 73 (78)
++|+.|++++|.+. .+|..
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCEEECCCCcCC-cCCHH
Confidence 45666666666666 55554
No 43
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=97.04 E-value=0.00051 Score=25.43 Aligned_cols=19 Identities=42% Similarity=0.625 Sum_probs=11.9
Q ss_pred CCCCEEEcccCcceeccCCC
Q 036517 54 GCLIKLNLARNKLSGSIPTS 73 (78)
Q Consensus 54 ~~L~~L~l~~n~l~~~~p~~ 73 (78)
++|+.|++++|.+. .+|..
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCEEECCCCcCC-cCCHH
Confidence 45666666666666 55554
No 44
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=96.88 E-value=0.00013 Score=41.91 Aligned_cols=16 Identities=38% Similarity=0.326 Sum_probs=7.4
Q ss_pred CCCCCCEEEcccCcce
Q 036517 52 RFGCLIKLNLARNKLS 67 (78)
Q Consensus 52 ~l~~L~~L~l~~n~l~ 67 (78)
.+..|++|++++|.+.
T Consensus 163 ~~~~L~~L~l~~n~l~ 178 (319)
T cd00116 163 ANRDLKELNLANNGIG 178 (319)
T ss_pred hCCCcCEEECcCCCCc
Confidence 3344455555444443
No 45
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.67 E-value=0.0014 Score=37.42 Aligned_cols=43 Identities=23% Similarity=0.268 Sum_probs=31.9
Q ss_pred cccCCCCCceEecccC--cCCCCCchhhhCCCCCCEEEcccCcce
Q 036517 25 EFGDSLHLQVFYLENN--KRTDSIPESLGRFGCLIKLNLARNKLS 67 (78)
Q Consensus 25 ~~~~~~~L~~l~l~~n--~~~~~~p~~~~~l~~L~~L~l~~n~l~ 67 (78)
.+..+++|+.|.++.| ++.+.++-....+++|+++.++.|.++
T Consensus 60 ~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 60 NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 3556778888888888 666666655666688888888888776
No 46
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=96.59 E-value=0.00035 Score=40.14 Aligned_cols=36 Identities=39% Similarity=0.462 Sum_probs=17.3
Q ss_pred CceEecccCcCCC----CCchhhhCC-CCCCEEEcccCcce
Q 036517 32 LQVFYLENNKRTD----SIPESLGRF-GCLIKLNLARNKLS 67 (78)
Q Consensus 32 L~~l~l~~n~~~~----~~p~~~~~l-~~L~~L~l~~n~l~ 67 (78)
|+.|++++|.+.+ .+...+..+ ++|+.|++++|.++
T Consensus 110 L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 150 (319)
T cd00116 110 LQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLE 150 (319)
T ss_pred ccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCC
Confidence 5555555555442 112223334 45555666555554
No 47
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=96.22 E-value=0.0015 Score=38.70 Aligned_cols=51 Identities=25% Similarity=0.150 Sum_probs=42.7
Q ss_pred ceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517 16 LYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS 67 (78)
Q Consensus 16 n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~ 67 (78)
...+|.....+..+..|..+|+++|.++ .+.+.+.-++.++.|++++|.+.
T Consensus 270 ~t~~G~~~~~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~ 320 (490)
T KOG1259|consen 270 STSNGSALVSADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR 320 (490)
T ss_pred CccCCceEEecchHhhhhhccccccchh-hhhhhhhhccceeEEecccccee
Confidence 3445555555667888999999999999 88899999999999999999987
No 48
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=95.88 E-value=0.0036 Score=37.84 Aligned_cols=40 Identities=35% Similarity=0.357 Sum_probs=19.2
Q ss_pred ccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517 26 FGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS 67 (78)
Q Consensus 26 ~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~ 67 (78)
+..+.+|+.|+++.|.+.... .+..+..|+.|++++|.+.
T Consensus 114 l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~ 153 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLIS 153 (414)
T ss_pred hhhhhcchheecccccccccc--chhhccchhhheeccCcch
Confidence 444555555555555555221 2333334555555555544
No 49
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.70 E-value=0.0094 Score=34.19 Aligned_cols=58 Identities=21% Similarity=0.217 Sum_probs=39.7
Q ss_pred hhhhcc-CCc--eeeecCCccccCCCCCceEecccCcCCCCCchh---hhCCCCCCEEEcccCcce
Q 036517 8 HLTILF-RNL--YLTGSVPPEFGDSLHLQVFYLENNKRTDSIPES---LGRFGCLIKLNLARNKLS 67 (78)
Q Consensus 8 ~l~~l~-~~n--~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~---~~~l~~L~~L~l~~n~l~ 67 (78)
+|..|. +.| +..+.++.-...+++|+.++++.|++. . ++. ...+.+|..|++.+|...
T Consensus 66 ~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~-~-lstl~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 66 KLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK-D-LSTLRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred hhhhhcccCCcccccccceehhhhCCceeEEeecCCccc-c-ccccchhhhhcchhhhhcccCCcc
Confidence 344444 777 666666655666799999999999987 2 222 345567778888877654
No 50
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.57 E-value=0.017 Score=32.43 Aligned_cols=43 Identities=23% Similarity=0.219 Sum_probs=24.9
Q ss_pred cccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517 25 EFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS 67 (78)
Q Consensus 25 ~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~ 67 (78)
.+..+++|..|.++.|+++..-|..-..++.|..|.+.+|++.
T Consensus 59 ~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~ 101 (233)
T KOG1644|consen 59 NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ 101 (233)
T ss_pred cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh
Confidence 3555666777777777776333332233455666666666655
No 51
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=95.42 E-value=0.011 Score=22.09 Aligned_cols=17 Identities=41% Similarity=0.735 Sum_probs=12.7
Q ss_pred CCCEEEcccCcceeccCC
Q 036517 55 CLIKLNLARNKLSGSIPT 72 (78)
Q Consensus 55 ~L~~L~l~~n~l~~~~p~ 72 (78)
+|+.|++++|++. .+|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 5677778888877 7776
No 52
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=94.99 E-value=0.015 Score=35.22 Aligned_cols=51 Identities=22% Similarity=0.239 Sum_probs=39.6
Q ss_pred CceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517 15 NLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS 67 (78)
Q Consensus 15 ~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~ 67 (78)
.|.+. .+-..+..+.+|..+++..|.+. .+...+..+.+|+.|++++|.+.
T Consensus 81 ~n~i~-~~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~ 131 (414)
T KOG0531|consen 81 QNLIA-KILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKIT 131 (414)
T ss_pred hhhhh-hhhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccc
Confidence 34444 22334677899999999999999 55554778999999999999988
No 53
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=94.62 E-value=0.034 Score=20.74 Aligned_cols=14 Identities=36% Similarity=0.532 Sum_probs=8.7
Q ss_pred CCCCEEEcccCcce
Q 036517 54 GCLIKLNLARNKLS 67 (78)
Q Consensus 54 ~~L~~L~l~~n~l~ 67 (78)
.+|+.|+++.|.++
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 35666666666665
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=94.59 E-value=0.047 Score=30.72 Aligned_cols=53 Identities=23% Similarity=0.128 Sum_probs=38.6
Q ss_pred CCceeeecCCccccCCCCCceEecccCcCCCCCch--hhhCCCCCCEEEcccCcce
Q 036517 14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPE--SLGRFGCLIKLNLARNKLS 67 (78)
Q Consensus 14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~--~~~~l~~L~~L~l~~n~l~ 67 (78)
..|.++..-|.--.-+++|..|.+.+|.+. ++.+ ....++.|++|.+-+|...
T Consensus 72 ~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Ltll~Npv~ 126 (233)
T KOG1644|consen 72 NNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYLTLLGNPVE 126 (233)
T ss_pred cCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCccceeeecCCchh
Confidence 889999554443334678999999999987 4432 3566788999988887665
No 55
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=94.51 E-value=0.029 Score=20.11 Aligned_cols=15 Identities=27% Similarity=0.430 Sum_probs=9.4
Q ss_pred CCCCEEEcccCccee
Q 036517 54 GCLIKLNLARNKLSG 68 (78)
Q Consensus 54 ~~L~~L~l~~n~l~~ 68 (78)
++|++|++++|.+..
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 567888888887653
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=93.48 E-value=0.1 Score=32.25 Aligned_cols=40 Identities=30% Similarity=0.435 Sum_probs=17.6
Q ss_pred CCceEecccC-cCCCCCchhhhCCCCCCEEEcccC-cceeccCCCC
Q 036517 31 HLQVFYLENN-KRTDSIPESLGRFGCLIKLNLARN-KLSGSIPTSF 74 (78)
Q Consensus 31 ~L~~l~l~~n-~~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~p~~~ 74 (78)
+|+.|.++++ .+. .+|+.+. .+|+.|++++| .+. .+|..+
T Consensus 73 sLtsL~Lsnc~nLt-sLP~~LP--~nLe~L~Ls~Cs~L~-sLP~sL 114 (426)
T PRK15386 73 ELTEITIENCNNLT-TLPGSIP--EGLEKLTVCHCPEIS-GLPESV 114 (426)
T ss_pred CCcEEEccCCCCcc-cCCchhh--hhhhheEccCccccc-cccccc
Confidence 3555555442 232 3443221 34555555555 333 444443
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=93.36 E-value=0.039 Score=35.97 Aligned_cols=39 Identities=15% Similarity=0.245 Sum_probs=22.9
Q ss_pred CCCCceEecccCcCC-CCCchhhhCCCCCCEEEcccCcce
Q 036517 29 SLHLQVFYLENNKRT-DSIPESLGRFGCLIKLNLARNKLS 67 (78)
Q Consensus 29 ~~~L~~l~l~~n~~~-~~~p~~~~~l~~L~~L~l~~n~l~ 67 (78)
+|+|+.|.+++-.+. .++-..+.++++|..||+++.+++
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~ 186 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS 186 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCcc
Confidence 566777766654432 223344556667777777776665
No 58
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=93.05 E-value=0.088 Score=19.73 Aligned_cols=14 Identities=43% Similarity=0.579 Sum_probs=9.7
Q ss_pred CCCCEEEcccCcce
Q 036517 54 GCLIKLNLARNKLS 67 (78)
Q Consensus 54 ~~L~~L~l~~n~l~ 67 (78)
++|++|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35777777777764
No 59
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=93.02 E-value=0.028 Score=34.82 Aligned_cols=43 Identities=23% Similarity=0.181 Sum_probs=32.9
Q ss_pred cccCCCCCceEecccCcCCCCCc--hhhhCCCCCCEEEcccCcce
Q 036517 25 EFGDSLHLQVFYLENNKRTDSIP--ESLGRFGCLIKLNLARNKLS 67 (78)
Q Consensus 25 ~~~~~~~L~~l~l~~n~~~~~~p--~~~~~l~~L~~L~l~~n~l~ 67 (78)
....+++++.||++.|-+....+ +....+++|+.|.++.|++.
T Consensus 141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~ 185 (505)
T KOG3207|consen 141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLS 185 (505)
T ss_pred hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccccc
Confidence 46678899999999988763322 34567889999999998876
No 60
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=92.94 E-value=0.023 Score=37.55 Aligned_cols=51 Identities=22% Similarity=0.222 Sum_probs=29.1
Q ss_pred CCceeeecCCccccCCCCCceEecccCcCCCCCc----------------------hhhhCCCCCCEEEcccCcce
Q 036517 14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIP----------------------ESLGRFGCLIKLNLARNKLS 67 (78)
Q Consensus 14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p----------------------~~~~~l~~L~~L~l~~n~l~ 67 (78)
++|.++.. +.+..++.|..||++.|.+. .+| ..+.++.+|+.||+++|-+.
T Consensus 195 shNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~tL~gie~LksL~~LDlsyNll~ 267 (1096)
T KOG1859|consen 195 SHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALTTLRGIENLKSLYGLDLSYNLLS 267 (1096)
T ss_pred chhhhhhh--HHHHhcccccccccccchhc-cccccchhhhhheeeeecccHHHhhhhHHhhhhhhccchhHhhhh
Confidence 55665532 25556666666666666655 333 23445566667777776655
No 61
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=92.69 E-value=0.1 Score=30.92 Aligned_cols=42 Identities=29% Similarity=0.304 Sum_probs=28.8
Q ss_pred ccCCCCCceEecccCcCCCCCchhh----hCCCCCCEEEcccCcce
Q 036517 26 FGDSLHLQVFYLENNKRTDSIPESL----GRFGCLIKLNLARNKLS 67 (78)
Q Consensus 26 ~~~~~~L~~l~l~~n~~~~~~p~~~----~~l~~L~~L~l~~n~l~ 67 (78)
+-.+++|+.+++|.|.+....|+.+ ..-+.|.+|.+++|.+.
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence 4456778888888888776666543 34457778888777654
No 62
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=92.16 E-value=0.014 Score=36.03 Aligned_cols=13 Identities=38% Similarity=0.544 Sum_probs=5.7
Q ss_pred CCCEEEcccCcce
Q 036517 55 CLIKLNLARNKLS 67 (78)
Q Consensus 55 ~L~~L~l~~n~l~ 67 (78)
.|+.|||++|++.
T Consensus 247 ~L~~LdLs~N~li 259 (505)
T KOG3207|consen 247 TLQELDLSNNNLI 259 (505)
T ss_pred HHhhccccCCccc
Confidence 3444444444433
No 63
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.62 E-value=0.0014 Score=37.51 Aligned_cols=45 Identities=18% Similarity=0.139 Sum_probs=23.6
Q ss_pred CCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCcCC
Q 036517 31 HLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNL 77 (78)
Q Consensus 31 ~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l 77 (78)
.+..++++.|.+. .+|+.++....+..+++..|++. ..|.+++++
T Consensus 66 ~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~ 110 (326)
T KOG0473|consen 66 RLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKE 110 (326)
T ss_pred HHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCcccccc
Confidence 3334444444444 45555555555566666666555 556555543
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.19 E-value=0.0098 Score=35.02 Aligned_cols=41 Identities=29% Similarity=0.323 Sum_probs=21.2
Q ss_pred cCCCCCceEecccCcCCCCCch--hhhCCCCCCEEEcccCccee
Q 036517 27 GDSLHLQVFYLENNKRTDSIPE--SLGRFGCLIKLNLARNKLSG 68 (78)
Q Consensus 27 ~~~~~L~~l~l~~n~~~~~~p~--~~~~l~~L~~L~l~~n~l~~ 68 (78)
..+++|+.|+|..|.+. .+.+ .+.++++|+.|.|..|...|
T Consensus 60 ~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~ENPCc~ 102 (388)
T KOG2123|consen 60 QRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLDENPCCG 102 (388)
T ss_pred HHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhccCCccc
Confidence 34444444455544444 2332 24566666777666665543
No 65
>PRK15386 type III secretion protein GogB; Provisional
Probab=89.64 E-value=0.35 Score=29.99 Aligned_cols=36 Identities=22% Similarity=0.267 Sum_probs=19.7
Q ss_pred hhhcc--CCceeeecCCccccCCCCCceEecccC-cCCCCCch
Q 036517 9 LTILF--RNLYLTGSVPPEFGDSLHLQVFYLENN-KRTDSIPE 48 (78)
Q Consensus 9 l~~l~--~~n~~~~~~p~~~~~~~~L~~l~l~~n-~~~~~~p~ 48 (78)
++.|. ..+.++ .+|+.+ ..+|+.|++++| .+. .+|.
T Consensus 74 LtsL~Lsnc~nLt-sLP~~L--P~nLe~L~Ls~Cs~L~-sLP~ 112 (426)
T PRK15386 74 LTEITIENCNNLT-TLPGSI--PEGLEKLTVCHCPEIS-GLPE 112 (426)
T ss_pred CcEEEccCCCCcc-cCCchh--hhhhhheEccCccccc-cccc
Confidence 44444 334443 455444 257888888877 444 4554
No 66
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.13 E-value=0.14 Score=30.65 Aligned_cols=38 Identities=29% Similarity=0.305 Sum_probs=20.4
Q ss_pred CCCCceEecccCcCCCCCch---hhhCCCCCCEEEcccCcce
Q 036517 29 SLHLQVFYLENNKRTDSIPE---SLGRFGCLIKLNLARNKLS 67 (78)
Q Consensus 29 ~~~L~~l~l~~n~~~~~~p~---~~~~l~~L~~L~l~~n~l~ 67 (78)
.+.++.+|+.+|.++ .+.+ ...+++.|++|+++.|.+.
T Consensus 70 ~~~v~elDL~~N~iS-dWseI~~ile~lP~l~~LNls~N~L~ 110 (418)
T KOG2982|consen 70 VTDVKELDLTGNLIS-DWSEIGAILEQLPALTTLNLSCNSLS 110 (418)
T ss_pred hhhhhhhhcccchhc-cHHHHHHHHhcCccceEeeccCCcCC
Confidence 344555666666655 2222 2345566666666666554
No 67
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.40 E-value=0.5 Score=28.48 Aligned_cols=54 Identities=17% Similarity=0.076 Sum_probs=30.3
Q ss_pred CCceeee--cCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517 14 RNLYLTG--SVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS 67 (78)
Q Consensus 14 ~~n~~~~--~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~ 67 (78)
.+|.++. .+..-+.+++.|+.|++++|.+...+-..-..+.+|+.|-+++..+.
T Consensus 79 ~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~ 134 (418)
T KOG2982|consen 79 TGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLS 134 (418)
T ss_pred ccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCC
Confidence 5566552 22222457888888888888876433211123345666666655544
No 68
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=88.23 E-value=0.13 Score=33.69 Aligned_cols=19 Identities=5% Similarity=0.020 Sum_probs=14.4
Q ss_pred cccCCCCCceEecccCcCC
Q 036517 25 EFGDSLHLQVFYLENNKRT 43 (78)
Q Consensus 25 ~~~~~~~L~~l~l~~n~~~ 43 (78)
-..++++|..||+|+..++
T Consensus 168 lc~sFpNL~sLDIS~TnI~ 186 (699)
T KOG3665|consen 168 LCASFPNLRSLDISGTNIS 186 (699)
T ss_pred HhhccCccceeecCCCCcc
Confidence 3557888888888887765
No 69
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=87.66 E-value=0.17 Score=30.62 Aligned_cols=38 Identities=24% Similarity=0.094 Sum_probs=19.0
Q ss_pred CCCCceEecccCcCCCCCchh----hhCCCCCCEEEcccCcc
Q 036517 29 SLHLQVFYLENNKRTDSIPES----LGRFGCLIKLNLARNKL 66 (78)
Q Consensus 29 ~~~L~~l~l~~n~~~~~~p~~----~~~l~~L~~L~l~~n~l 66 (78)
.++|+.++||.|.+.-..+.. +..+..|++|.|.+|.+
T Consensus 91 ~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Gl 132 (382)
T KOG1909|consen 91 CPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGL 132 (382)
T ss_pred CCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCC
Confidence 345666666666554333322 23445555555555543
No 70
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=86.79 E-value=0.26 Score=29.90 Aligned_cols=16 Identities=38% Similarity=0.465 Sum_probs=7.6
Q ss_pred CCCCCceEecccCcCC
Q 036517 28 DSLHLQVFYLENNKRT 43 (78)
Q Consensus 28 ~~~~L~~l~l~~n~~~ 43 (78)
.+++|+.||+..|.++
T Consensus 211 ~~~~LevLdl~DNtft 226 (382)
T KOG1909|consen 211 HCPHLEVLDLRDNTFT 226 (382)
T ss_pred hCCcceeeecccchhh
Confidence 3444445555444443
No 71
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=86.35 E-value=0.67 Score=34.90 Aligned_cols=31 Identities=13% Similarity=-0.056 Sum_probs=21.0
Q ss_pred CCceeeecCCccccCCCCCceEecccCcCCC
Q 036517 14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTD 44 (78)
Q Consensus 14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~ 44 (78)
++|.|+...+..|..+.+|+.|+|++|.+..
T Consensus 3 SnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 3 SNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 4677774444457777888888888887653
No 72
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=81.70 E-value=0.53 Score=28.41 Aligned_cols=36 Identities=33% Similarity=0.307 Sum_probs=15.4
Q ss_pred cccCCCCCceEecccCcCCCCCchh---hhCCCCCCEEEcc
Q 036517 25 EFGDSLHLQVFYLENNKRTDSIPES---LGRFGCLIKLNLA 62 (78)
Q Consensus 25 ~~~~~~~L~~l~l~~n~~~~~~p~~---~~~l~~L~~L~l~ 62 (78)
.|.+++.|+++.++.+. +..|+. +...++|.+||+.
T Consensus 333 ~~~kf~~L~~lSlsRCY--~i~p~~~~~l~s~psl~yLdv~ 371 (419)
T KOG2120|consen 333 EFFKFNYLQHLSLSRCY--DIIPETLLELNSKPSLVYLDVF 371 (419)
T ss_pred HHHhcchheeeehhhhc--CCChHHeeeeccCcceEEEEec
Confidence 34444555555444433 123333 2333455555543
No 73
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.11 E-value=0.17 Score=30.09 Aligned_cols=40 Identities=28% Similarity=0.282 Sum_probs=32.4
Q ss_pred ccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517 26 FGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS 67 (78)
Q Consensus 26 ~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~ 67 (78)
...|+.|+.|.|+-|+++. + ..+..|+.|+.|+|..|.|.
T Consensus 37 c~kMp~lEVLsLSvNkIss-L-~pl~rCtrLkElYLRkN~I~ 76 (388)
T KOG2123|consen 37 CEKMPLLEVLSLSVNKISS-L-APLQRCTRLKELYLRKNCIE 76 (388)
T ss_pred HHhcccceeEEeecccccc-c-hhHHHHHHHHHHHHHhcccc
Confidence 4578999999999999983 3 34778888999999888876
No 74
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=79.14 E-value=6.2 Score=19.54 Aligned_cols=37 Identities=16% Similarity=0.228 Sum_probs=14.3
Q ss_pred cccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcc
Q 036517 25 EFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLA 62 (78)
Q Consensus 25 ~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~ 62 (78)
.|..+.+|+.+.+..+ +...-...|..+.+++.+.+.
T Consensus 30 ~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 30 AFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp TTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred hccccccccccccccc-ccccceeeeeccccccccccc
Confidence 3445555555555443 331222334444445555553
No 75
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=76.36 E-value=2.3 Score=15.25 Aligned_cols=12 Identities=25% Similarity=0.224 Sum_probs=8.4
Q ss_pred CCCCEEEcccCc
Q 036517 54 GCLIKLNLARNK 65 (78)
Q Consensus 54 ~~L~~L~l~~n~ 65 (78)
++|+.|+++++.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 567777777764
No 76
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=48.84 E-value=12 Score=24.46 Aligned_cols=35 Identities=20% Similarity=0.112 Sum_probs=18.5
Q ss_pred CCCCceEecccCcCCCCCc---hhhhCCCCCCEEEcccC
Q 036517 29 SLHLQVFYLENNKRTDSIP---ESLGRFGCLIKLNLARN 64 (78)
Q Consensus 29 ~~~L~~l~l~~n~~~~~~p---~~~~~l~~L~~L~l~~n 64 (78)
.+.+..+.+++|++. .+. .....-+.|..|+|++|
T Consensus 217 ~p~i~sl~lsnNrL~-~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLY-HLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred Ccceeeeecccchhh-chhhhhHHHHhcchhheeecccc
Confidence 455566666666655 221 11223356666666666
No 77
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=45.75 E-value=12 Score=13.90 Aligned_cols=15 Identities=20% Similarity=0.142 Sum_probs=10.3
Q ss_pred hhhCCCCCCEEEccc
Q 036517 49 SLGRFGCLIKLNLAR 63 (78)
Q Consensus 49 ~~~~l~~L~~L~l~~ 63 (78)
.|..+++|+.||...
T Consensus 8 Vi~~LPqL~~LD~~~ 22 (26)
T smart00446 8 VIRLLPQLRKLDXXX 22 (26)
T ss_pred HHHHCCccceecccc
Confidence 356678888887643
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.69 E-value=6.6 Score=22.39 Aligned_cols=11 Identities=27% Similarity=0.292 Sum_probs=6.0
Q ss_pred CCCCEEEcccC
Q 036517 54 GCLIKLNLARN 64 (78)
Q Consensus 54 ~~L~~L~l~~n 64 (78)
++|+.|++++|
T Consensus 151 ~~L~~L~lsgC 161 (221)
T KOG3864|consen 151 PSLQDLDLSGC 161 (221)
T ss_pred cchheeeccCC
Confidence 45555555544
No 79
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=39.32 E-value=22 Score=27.90 Aligned_cols=33 Identities=18% Similarity=0.163 Sum_probs=23.0
Q ss_pred ecccCcCCCCCchhhhCCCCCCEEEcccCccee
Q 036517 36 YLENNKRTDSIPESLGRFGCLIKLNLARNKLSG 68 (78)
Q Consensus 36 ~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~ 68 (78)
||++|+|...-+..|..+.+|+.|+|++|.+..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 467777774444567777788888888777653
No 80
>TIGR02167 Liste_lipo_26 bacterial surface protein 26-residue repeat. This model describes a tandem peptide repeat sequence of 25 or 26 residues, found in predicted surface proteins (often lipoproteins) from Listeria monocytogenes, L. innocua, Enterococcus faecalis, Lactobacillus plantarum, Mycoplasma mycoides, Helicobacter hepaticus, and other species.
Probab=31.09 E-value=21 Score=12.96 Aligned_cols=12 Identities=17% Similarity=0.326 Sum_probs=5.6
Q ss_pred hCCCCCCEEEcc
Q 036517 51 GRFGCLIKLNLA 62 (78)
Q Consensus 51 ~~l~~L~~L~l~ 62 (78)
.++.++..|+++
T Consensus 3 ~~~~~~~~ldls 14 (26)
T TIGR02167 3 SGCSSLTSLDVS 14 (26)
T ss_pred Cccccccccccc
Confidence 344445555444
No 81
>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=22.29 E-value=43 Score=16.42 Aligned_cols=18 Identities=28% Similarity=0.482 Sum_probs=8.6
Q ss_pred CCCCEEEcccCcceeccC
Q 036517 54 GCLIKLNLARNKLSGSIP 71 (78)
Q Consensus 54 ~~L~~L~l~~n~l~~~~p 71 (78)
+.|-+.|.....++|++|
T Consensus 26 PrL~yvdp~~~~~KgeIp 43 (89)
T cd01262 26 PRLIYVDPVKKVVKGEIP 43 (89)
T ss_pred ceEEEEcCCcCeEEeEec
Confidence 344444444444555444
Done!