Query 036517
Match_columns 78
No_of_seqs 134 out of 2388
Neff 10.9
Searched_HMMs 29240
Date Mon Mar 25 03:59:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036517.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036517hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 99.6 4.3E-15 1.5E-19 92.0 6.6 71 2-72 648-722 (768)
2 3rgz_A Protein brassinosteroid 99.6 4.8E-15 1.7E-19 91.8 6.5 76 2-77 624-703 (768)
3 1ogq_A PGIP-2, polygalacturona 99.5 6E-14 2.1E-18 79.5 6.2 74 3-76 94-171 (313)
4 4fcg_A Uncharacterized protein 99.5 1.6E-13 5.4E-18 78.3 6.4 76 2-77 221-300 (328)
5 1w8a_A SLIT protein; signaling 99.5 2.2E-13 7.7E-18 72.6 6.3 72 6-77 50-125 (192)
6 1ogq_A PGIP-2, polygalacturona 99.4 1.3E-13 4.5E-18 78.1 4.7 76 2-77 68-148 (313)
7 2wfh_A SLIT homolog 2 protein 99.4 1.2E-12 4.1E-17 69.9 7.3 70 2-72 46-119 (193)
8 3g39_A Variable lymphocyte rec 99.4 8.8E-13 3E-17 69.2 6.5 75 2-77 24-101 (170)
9 2r9u_A Variable lymphocyte rec 99.4 1.2E-12 4E-17 69.0 6.5 75 2-77 27-104 (174)
10 2ifg_A High affinity nerve gro 99.4 7.9E-13 2.7E-17 75.5 6.2 71 2-74 24-99 (347)
11 2v70_A SLIT-2, SLIT homolog 2 99.4 2.2E-12 7.6E-17 70.0 6.4 61 14-74 65-125 (220)
12 4fcg_A Uncharacterized protein 99.3 2.8E-12 9.7E-17 73.1 6.4 75 2-77 198-276 (328)
13 4b8c_D Glucose-repressible alc 99.3 2.3E-12 7.9E-17 79.9 6.4 73 2-77 239-315 (727)
14 4g8a_A TOLL-like receptor 4; l 99.3 3.7E-12 1.3E-16 76.6 6.9 75 3-77 487-565 (635)
15 2v70_A SLIT-2, SLIT homolog 2 99.3 9.9E-12 3.4E-16 67.5 7.7 73 5-77 76-152 (220)
16 2wfh_A SLIT homolog 2 protein 99.3 6.7E-12 2.3E-16 67.1 6.5 75 2-77 25-101 (193)
17 1w8a_A SLIT protein; signaling 99.3 8E-12 2.7E-16 66.6 6.4 76 2-77 23-101 (192)
18 2v9t_B SLIT homolog 2 protein 99.3 1E-11 3.6E-16 67.4 7.0 54 14-67 64-117 (220)
19 4eco_A Uncharacterized protein 99.3 4E-12 1.4E-16 77.7 5.8 60 17-77 194-272 (636)
20 4eco_A Uncharacterized protein 99.3 4.6E-13 1.6E-17 81.7 1.5 73 2-74 198-295 (636)
21 4g8a_A TOLL-like receptor 4; l 99.3 3.4E-12 1.1E-16 76.8 5.2 59 9-67 54-113 (635)
22 2v9t_B SLIT homolog 2 protein 99.3 1.4E-11 4.8E-16 66.9 6.7 75 3-77 73-151 (220)
23 3e6j_A Variable lymphocyte rec 99.3 1.4E-11 4.9E-16 67.1 6.5 41 27-67 85-125 (229)
24 1dce_A Protein (RAB geranylger 99.2 2.6E-11 8.7E-16 73.6 6.7 52 14-67 494-546 (567)
25 3v47_A TOLL-like receptor 5B a 99.2 3E-11 1E-15 70.8 6.8 62 14-75 307-368 (455)
26 2ell_A Acidic leucine-rich nuc 99.2 2.5E-11 8.7E-16 63.2 5.9 64 2-67 41-108 (168)
27 4b8c_D Glucose-repressible alc 99.2 3.4E-12 1.1E-16 79.2 2.9 72 1-74 261-336 (727)
28 4ecn_A Leucine-rich repeat pro 99.2 2.1E-12 7.1E-17 81.5 1.6 74 2-75 440-538 (876)
29 3e6j_A Variable lymphocyte rec 99.2 4.3E-11 1.5E-15 65.3 6.5 74 2-76 34-110 (229)
30 2z66_A Variable lymphocyte rec 99.2 5.8E-11 2E-15 66.7 7.1 74 3-76 168-245 (306)
31 3vq2_A TLR4, TOLL-like recepto 99.2 1.8E-11 6.2E-16 73.9 5.1 73 3-76 466-542 (606)
32 1dce_A Protein (RAB geranylger 99.2 3.2E-11 1.1E-15 73.2 6.1 72 2-77 456-532 (567)
33 2o6r_A Variable lymphocyte rec 99.2 7.7E-11 2.6E-15 61.8 6.7 58 14-72 60-117 (177)
34 2je0_A Acidic leucine-rich nuc 99.2 2E-11 6.9E-16 62.5 4.4 52 14-67 50-101 (149)
35 3t6q_A CD180 antigen; protein- 99.2 3.3E-11 1.1E-15 72.8 5.8 63 14-76 41-103 (606)
36 3g39_A Variable lymphocyte rec 99.2 5.6E-11 1.9E-15 62.3 5.9 67 3-69 47-117 (170)
37 2o6r_A Variable lymphocyte rec 99.2 8.3E-11 2.9E-15 61.7 6.5 69 8-76 29-98 (177)
38 3m19_A Variable lymphocyte rec 99.2 9.7E-11 3.3E-15 64.4 6.7 54 14-67 67-120 (251)
39 3m19_A Variable lymphocyte rec 99.2 1E-10 3.5E-15 64.3 6.7 54 14-67 115-168 (251)
40 2z81_A CD282 antigen, TOLL-lik 99.2 9.3E-11 3.2E-15 70.1 6.9 73 4-76 44-121 (549)
41 1p9a_G Platelet glycoprotein I 99.2 1.3E-10 4.5E-15 65.3 6.9 54 14-67 108-161 (290)
42 2r9u_A Variable lymphocyte rec 99.2 1.1E-10 3.6E-15 61.5 5.9 65 3-67 50-118 (174)
43 3vq2_A TLR4, TOLL-like recepto 99.2 1.2E-10 4E-15 70.4 6.8 54 14-67 64-117 (606)
44 3rfs_A Internalin B, repeat mo 99.2 1.6E-10 5.5E-15 64.2 6.8 54 14-67 141-194 (272)
45 2o6s_A Variable lymphocyte rec 99.1 1.9E-10 6.6E-15 61.6 6.8 41 27-67 73-113 (208)
46 2o6s_A Variable lymphocyte rec 99.1 2.1E-10 7.1E-15 61.5 6.7 65 7-72 73-141 (208)
47 3v47_A TOLL-like receptor 5B a 99.1 1.1E-10 3.7E-15 68.4 6.1 54 14-67 331-384 (455)
48 2z62_A TOLL-like receptor 4, v 99.1 1.2E-10 4.2E-15 64.6 5.9 66 9-74 30-96 (276)
49 1p9a_G Platelet glycoprotein I 99.1 2.3E-10 7.8E-15 64.4 6.8 73 4-77 118-194 (290)
50 3rfs_A Internalin B, repeat mo 99.1 2.5E-10 8.7E-15 63.5 6.7 54 14-67 117-170 (272)
51 2z81_A CD282 antigen, TOLL-lik 99.1 4.3E-11 1.5E-15 71.5 3.6 76 2-77 20-97 (549)
52 2xot_A Amphoterin-induced prot 99.1 2.1E-10 7.1E-15 66.1 6.2 54 14-67 72-125 (361)
53 1ozn_A Reticulon 4 receptor; N 99.1 2.5E-10 8.4E-15 63.7 6.3 54 14-67 113-166 (285)
54 2id5_A Lingo-1, leucine rich r 99.1 2.9E-10 1E-14 67.1 6.8 61 14-74 64-124 (477)
55 3zyi_A Leucine-rich repeat-con 99.1 2.1E-10 7.1E-15 67.6 6.0 54 14-67 107-160 (452)
56 3t6q_A CD180 antigen; protein- 99.1 1.9E-10 6.5E-15 69.5 5.9 72 4-75 51-126 (606)
57 3oja_B Anopheles plasmodium-re 99.1 3.2E-10 1.1E-14 68.8 6.9 62 14-75 107-168 (597)
58 4ezg_A Putative uncharacterize 99.1 1.7E-10 5.8E-15 61.5 4.9 52 14-65 96-147 (197)
59 1ozn_A Reticulon 4 receptor; N 99.1 5.2E-10 1.8E-14 62.4 6.9 62 14-75 137-198 (285)
60 2z63_A TOLL-like receptor 4, v 99.1 2.3E-10 8E-15 68.5 5.8 54 14-67 453-507 (570)
61 4ecn_A Leucine-rich repeat pro 99.1 2.9E-11 9.9E-16 76.4 1.8 75 2-77 481-572 (876)
62 2z80_A TOLL-like receptor 2, v 99.1 5.8E-10 2E-14 63.8 7.0 67 5-72 71-141 (353)
63 2xot_A Amphoterin-induced prot 99.1 3.3E-10 1.1E-14 65.2 6.0 76 2-77 33-111 (361)
64 3zyi_A Leucine-rich repeat-con 99.1 5.1E-10 1.8E-14 65.9 6.8 74 2-76 69-145 (452)
65 1xku_A Decorin; proteoglycan, 99.1 5.4E-10 1.8E-14 63.4 6.2 66 8-74 53-119 (330)
66 2ell_A Acidic leucine-rich nuc 99.1 2E-10 6.9E-15 59.7 4.1 57 14-72 79-137 (168)
67 2z63_A TOLL-like receptor 4, v 99.1 4.7E-10 1.6E-14 67.2 6.2 71 2-72 462-536 (570)
68 2ft3_A Biglycan; proteoglycan, 99.1 4.3E-10 1.5E-14 63.9 5.7 65 9-74 56-121 (332)
69 3zyj_A Leucine-rich repeat-con 99.0 6.3E-10 2.1E-14 65.4 6.3 54 14-67 72-125 (440)
70 3o6n_A APL1; leucine-rich repe 99.0 9.7E-10 3.3E-14 63.6 6.9 54 14-67 77-130 (390)
71 1wwl_A Monocyte differentiatio 99.0 1.8E-10 6.3E-15 65.1 3.8 63 14-77 103-172 (312)
72 1ziw_A TOLL-like receptor 3; i 99.0 6.3E-10 2.2E-14 68.0 6.3 47 26-72 93-139 (680)
73 2o6q_A Variable lymphocyte rec 99.0 1.1E-09 3.7E-14 60.8 6.8 54 14-67 141-194 (270)
74 2z66_A Variable lymphocyte rec 99.0 5E-10 1.7E-14 62.9 5.4 54 14-67 158-212 (306)
75 2je0_A Acidic leucine-rich nuc 99.0 1.5E-10 5E-15 59.2 3.0 66 7-74 17-84 (149)
76 1xku_A Decorin; proteoglycan, 99.0 8.9E-10 3E-14 62.5 6.5 53 14-67 224-276 (330)
77 2z80_A TOLL-like receptor 2, v 99.0 2.8E-10 9.6E-15 65.1 4.3 71 2-73 46-118 (353)
78 2z62_A TOLL-like receptor 4, v 99.0 8.9E-10 3E-14 61.2 6.1 54 14-67 60-113 (276)
79 3a79_B TLR6, VLRB.59, TOLL-lik 99.0 4.3E-10 1.5E-14 67.7 5.1 57 14-71 60-116 (562)
80 2o6q_A Variable lymphocyte rec 99.0 1.3E-09 4.3E-14 60.5 6.6 54 14-67 117-170 (270)
81 3j0a_A TOLL-like receptor 5; m 99.0 5.4E-10 1.9E-14 70.1 5.6 46 23-68 66-111 (844)
82 2z7x_B TOLL-like receptor 1, v 99.0 1.8E-10 6.2E-15 68.6 3.2 54 14-67 29-82 (520)
83 2id5_A Lingo-1, leucine rich r 99.0 9E-10 3.1E-14 65.1 6.0 74 3-76 73-150 (477)
84 3j0a_A TOLL-like receptor 5; m 99.0 6.7E-10 2.3E-14 69.7 5.7 75 3-77 66-147 (844)
85 3zyj_A Leucine-rich repeat-con 99.0 1.3E-09 4.3E-14 64.1 6.4 67 5-72 83-153 (440)
86 2ft3_A Biglycan; proteoglycan, 99.0 1.5E-09 5.3E-14 61.6 6.5 53 14-67 225-277 (332)
87 3a79_B TLR6, VLRB.59, TOLL-lik 99.0 5.7E-10 2E-14 67.2 5.0 71 4-77 70-145 (562)
88 4ezg_A Putative uncharacterize 99.0 8.3E-10 2.9E-14 58.8 5.0 66 3-71 105-175 (197)
89 3o6n_A APL1; leucine-rich repe 99.0 1.2E-09 4.2E-14 63.2 6.0 72 5-77 88-164 (390)
90 2z7x_B TOLL-like receptor 1, v 99.0 3.7E-10 1.3E-14 67.2 3.9 70 5-77 40-114 (520)
91 1ziw_A TOLL-like receptor 3; i 99.0 9.9E-10 3.4E-14 67.2 5.8 63 14-76 57-119 (680)
92 3oja_B Anopheles plasmodium-re 99.0 1.5E-09 5E-14 66.0 6.0 70 7-77 72-146 (597)
93 1a9n_A U2A', U2A'; complex (nu 99.0 5.3E-10 1.8E-14 58.7 3.5 52 14-67 50-101 (176)
94 2ifg_A High affinity nerve gro 99.0 1.4E-09 4.7E-14 62.1 5.4 64 4-68 50-117 (347)
95 2xwt_C Thyrotropin receptor; s 98.9 9.2E-10 3.1E-14 60.1 4.0 43 25-67 75-118 (239)
96 1a9n_A U2A', U2A'; complex (nu 98.9 1.6E-09 5.4E-14 56.8 4.6 57 14-72 72-130 (176)
97 2xwt_C Thyrotropin receptor; s 98.9 1.8E-09 6.2E-14 58.9 4.3 70 8-77 32-104 (239)
98 1wwl_A Monocyte differentiatio 98.9 5.6E-10 1.9E-14 63.1 1.6 54 14-68 129-187 (312)
99 1jl5_A Outer protein YOPM; leu 98.8 2.6E-09 8.8E-14 63.3 2.4 67 7-77 337-421 (454)
100 3oja_A Leucine-rich immune mol 98.8 1.5E-08 5.3E-13 60.5 5.5 46 29-76 190-235 (487)
101 3oja_A Leucine-rich immune mol 98.7 5.7E-09 1.9E-13 62.3 3.3 52 14-67 152-204 (487)
102 3o53_A Protein LRIM1, AGAP0063 98.7 1.8E-08 6E-13 57.1 4.8 59 14-76 177-235 (317)
103 4glp_A Monocyte differentiatio 98.7 1.9E-08 6.6E-13 56.8 4.6 40 28-67 143-182 (310)
104 1ds9_A Outer arm dynein; leuci 98.7 3.9E-10 1.3E-14 60.2 -2.5 51 14-67 56-106 (198)
105 4glp_A Monocyte differentiatio 98.7 2.3E-08 7.8E-13 56.5 4.5 51 14-67 232-285 (310)
106 3o53_A Protein LRIM1, AGAP0063 98.7 3.6E-09 1.2E-13 59.9 0.8 66 8-75 192-259 (317)
107 4fmz_A Internalin; leucine ric 98.7 3.7E-08 1.3E-12 56.1 4.9 56 14-71 273-328 (347)
108 4ay9_X Follicle-stimulating ho 98.7 3.5E-08 1.2E-12 56.6 4.7 66 2-67 24-93 (350)
109 1h6t_A Internalin B; cell adhe 98.6 8.4E-08 2.9E-12 53.9 5.9 40 26-67 152-191 (291)
110 3g06_A SSPH2 (leucine-rich rep 98.6 1E-08 3.5E-13 63.0 1.7 54 14-72 249-302 (622)
111 1h6u_A Internalin H; cell adhe 98.6 1.8E-07 6.2E-12 52.9 6.1 50 14-67 71-120 (308)
112 1h6t_A Internalin B; cell adhe 98.6 1.7E-07 5.7E-12 52.7 5.8 50 14-67 120-169 (291)
113 3rw6_A Nuclear RNA export fact 98.6 4.9E-08 1.7E-12 54.7 3.6 62 8-71 171-237 (267)
114 4fmz_A Internalin; leucine ric 98.6 4.4E-08 1.5E-12 55.7 3.3 60 6-67 283-346 (347)
115 1xeu_A Internalin C; cellular 98.6 2.1E-07 7.1E-12 51.7 5.9 53 14-71 49-101 (263)
116 1m9s_A Internalin B; cell inva 98.5 2.5E-07 8.4E-12 56.8 6.3 40 26-67 149-188 (605)
117 3cvr_A Invasion plasmid antige 98.5 8E-08 2.7E-12 58.7 3.9 35 33-68 210-244 (571)
118 1ds9_A Outer arm dynein; leuci 98.5 8.1E-09 2.8E-13 55.0 -0.5 58 14-74 26-89 (198)
119 1jl5_A Outer protein YOPM; leu 98.5 2.3E-08 8E-13 59.3 1.2 30 2-31 26-59 (454)
120 1m9s_A Internalin B; cell inva 98.5 3.2E-07 1.1E-11 56.4 6.0 51 14-68 117-167 (605)
121 1xeu_A Internalin C; cellular 98.5 2.7E-07 9.1E-12 51.3 5.3 51 14-67 71-141 (263)
122 3g06_A SSPH2 (leucine-rich rep 98.5 2.4E-07 8.3E-12 57.0 5.3 60 9-77 223-283 (622)
123 1h6u_A Internalin H; cell adhe 98.5 3.6E-07 1.2E-11 51.7 5.7 18 50-67 147-164 (308)
124 1o6v_A Internalin A; bacterial 98.5 3.5E-07 1.2E-11 54.2 5.7 50 14-67 76-125 (466)
125 3bz5_A Internalin-J, INLJ; leu 98.5 3.5E-07 1.2E-11 54.3 5.4 49 14-67 50-98 (457)
126 1o6v_A Internalin A; bacterial 98.5 4.6E-07 1.6E-11 53.6 5.8 38 28-67 351-388 (466)
127 3cvr_A Invasion plasmid antige 98.5 3.7E-08 1.2E-12 60.1 1.0 67 2-77 155-229 (571)
128 3bz5_A Internalin-J, INLJ; leu 98.4 1.1E-06 3.8E-11 52.2 6.2 49 14-68 199-247 (457)
129 4ay9_X Follicle-stimulating ho 98.4 4.5E-07 1.5E-11 52.0 3.9 57 14-73 17-73 (350)
130 2ast_B S-phase kinase-associat 98.3 9.8E-08 3.4E-12 54.1 0.8 51 14-64 101-152 (336)
131 2ast_B S-phase kinase-associat 98.3 1.7E-07 5.9E-12 53.0 1.8 54 14-68 78-132 (336)
132 2ca6_A RAN GTPase-activating p 98.2 2.3E-07 7.9E-12 53.6 0.6 47 21-67 235-287 (386)
133 2ca6_A RAN GTPase-activating p 98.2 1.4E-07 5E-12 54.5 -0.4 68 3-70 237-319 (386)
134 3goz_A Leucine-rich repeat-con 98.1 1.5E-07 5.1E-12 54.2 -1.3 43 25-67 45-93 (362)
135 3rw6_A Nuclear RNA export fact 98.1 2.1E-06 7.3E-11 48.2 3.2 42 27-68 167-210 (267)
136 1z7x_W Ribonuclease inhibitor; 98.0 3.1E-07 1.1E-11 53.9 -1.3 55 14-68 349-412 (461)
137 3goz_A Leucine-rich repeat-con 98.0 8.7E-07 3E-11 51.0 0.5 58 14-71 6-68 (362)
138 3rfe_A Platelet glycoprotein I 97.8 5.2E-05 1.8E-09 38.2 4.4 52 14-67 16-68 (130)
139 1z7x_W Ribonuclease inhibitor; 97.7 8.4E-07 2.9E-11 52.1 -3.4 43 25-67 336-383 (461)
140 3sb4_A Hypothetical leucine ri 97.5 0.00023 7.8E-09 40.5 5.1 43 24-67 267-310 (329)
141 3ogk_B Coronatine-insensitive 97.5 8.6E-06 2.9E-10 49.2 -1.0 55 14-68 471-527 (592)
142 3ogk_B Coronatine-insensitive 97.5 8.3E-06 2.8E-10 49.2 -1.4 54 14-67 172-233 (592)
143 3sb4_A Hypothetical leucine ri 97.4 0.00046 1.6E-08 39.2 5.0 60 14-76 234-295 (329)
144 3un9_A NLR family member X1; l 97.3 2.1E-05 7.1E-10 45.8 -1.0 41 27-67 208-252 (372)
145 3un9_A NLR family member X1; l 97.2 3.6E-05 1.2E-09 44.8 -0.4 54 14-67 163-224 (372)
146 3rfe_A Platelet glycoprotein I 96.9 0.00084 2.9E-08 33.7 2.6 42 2-43 25-68 (130)
147 2p1m_B Transport inhibitor res 96.8 0.0001 3.5E-09 44.5 -1.1 54 14-67 113-169 (594)
148 1io0_A Tropomodulin; LRR prote 96.6 0.00038 1.3E-08 36.8 0.4 39 29-67 92-136 (185)
149 1io0_A Tropomodulin; LRR prote 96.6 0.00034 1.2E-08 36.9 -0.1 42 26-67 61-106 (185)
150 2ra8_A Uncharacterized protein 96.5 0.00012 4.3E-09 42.6 -2.2 14 53-66 306-319 (362)
151 2p1m_B Transport inhibitor res 96.4 0.00031 1.1E-08 42.4 -0.9 38 29-66 455-493 (594)
152 3e4g_A ATP synthase subunit S, 95.9 0.012 3.9E-07 31.2 3.7 52 14-65 69-125 (176)
153 4fdw_A Leucine rich hypothetic 95.5 0.045 1.5E-06 32.3 5.4 41 25-67 318-358 (401)
154 3e4g_A ATP synthase subunit S, 95.4 0.0035 1.2E-07 33.2 0.4 34 31-64 62-95 (176)
155 2ra8_A Uncharacterized protein 93.8 0.021 7.1E-07 33.3 1.1 40 29-68 251-293 (362)
156 4fdw_A Leucine rich hypothetic 93.2 0.23 7.8E-06 29.3 4.9 16 25-40 266-281 (401)
157 1pgv_A TMD-1, tropomodulin TMD 92.7 0.08 2.7E-06 28.5 2.3 42 26-67 66-111 (197)
158 4fs7_A Uncharacterized protein 92.7 0.18 6E-06 29.4 3.9 38 25-63 338-375 (394)
159 4gt6_A Cell surface protein; l 92.0 0.57 1.9E-05 27.2 5.4 40 25-65 329-368 (394)
160 4h09_A Hypothetical leucine ri 90.4 0.57 1.9E-05 27.0 4.4 39 25-63 281-319 (379)
161 4h09_A Hypothetical leucine ri 89.4 0.4 1.4E-05 27.6 3.2 50 14-64 294-343 (379)
162 4fs7_A Uncharacterized protein 88.4 1.2 4.3E-05 25.8 4.8 45 24-71 314-358 (394)
163 4gt6_A Cell surface protein; l 86.2 1.6 5.3E-05 25.4 4.4 39 25-64 306-344 (394)
164 2lz0_A Uncharacterized protein 76.1 4.9 0.00017 19.0 3.7 40 24-64 14-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.58 E-value=4.3e-15 Score=91.99 Aligned_cols=71 Identities=34% Similarity=0.577 Sum_probs=38.0
Q ss_pred CCcccchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCC
Q 036517 2 IPLYRSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPT 72 (78)
Q Consensus 2 ~p~~~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~ 72 (78)
+|.+++.++.|+ ++|.++|.+|..++.+++|+.|++++|.++|.+|..+..+++|++|++++|++.|.+|.
T Consensus 648 ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 648 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCS
T ss_pred CCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCC
Confidence 344444444444 55555555555555555555555555555555555555555555555555555555553
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.57 E-value=4.8e-15 Score=91.78 Aligned_cols=76 Identities=29% Similarity=0.427 Sum_probs=68.5
Q ss_pred CCcccchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCcCC
Q 036517 2 IPLYRSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNL 77 (78)
Q Consensus 2 ~p~~~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l 77 (78)
+|..+..++.|+ ++|.++|.+|.+++.++.|+.|++++|.++|.+|..++.+++|+.||+++|+++|.+|..++++
T Consensus 624 ~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l 703 (768)
T 3rgz_A 624 TSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 703 (768)
T ss_dssp CCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGC
T ss_pred CchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCC
Confidence 355565555555 9999999999999999999999999999999999999999999999999999999999988765
No 3
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.50 E-value=6e-14 Score=79.46 Aligned_cols=74 Identities=24% Similarity=0.458 Sum_probs=41.7
Q ss_pred Ccccchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCcC
Q 036517 3 PLYRSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGN 76 (78)
Q Consensus 3 p~~~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~ 76 (78)
|..+..++.|+ ++|.+++.+|..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+++
T Consensus 94 p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~ 171 (313)
T 1ogq_A 94 PPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171 (313)
T ss_dssp CGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGC
T ss_pred ChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhh
Confidence 44444444444 455555555555555566666666666555555555656666666666666665555555443
No 4
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.46 E-value=1.6e-13 Score=78.25 Aligned_cols=76 Identities=24% Similarity=0.284 Sum_probs=57.3
Q ss_pred CCcccchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCcCC
Q 036517 2 IPLYRSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNL 77 (78)
Q Consensus 2 ~p~~~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l 77 (78)
+|+.+..++.|+ ++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..++++
T Consensus 221 l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L 300 (328)
T 4fcg_A 221 LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300 (328)
T ss_dssp CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGS
T ss_pred CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhc
Confidence 455555555555 6677777777777888888888888877777788778888888888888888777888777765
No 5
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.46 E-value=2.2e-13 Score=72.61 Aligned_cols=72 Identities=31% Similarity=0.354 Sum_probs=52.4
Q ss_pred cchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCcCC
Q 036517 6 RSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNL 77 (78)
Q Consensus 6 ~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l 77 (78)
+..++.|+ ++|.+++..|..+..+++|+.|++++|.+.+..+..|..+++|++|++++|.+++..|..+..+
T Consensus 50 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 125 (192)
T 1w8a_A 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHL 125 (192)
T ss_dssp GGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTC
T ss_pred cccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcC
Confidence 44555554 7777777767777788888888888888876666667778888888888888876667666544
No 6
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.44 E-value=1.3e-13 Score=78.08 Aligned_cols=76 Identities=29% Similarity=0.531 Sum_probs=64.8
Q ss_pred CCcccchhhhcc----C-CceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCcC
Q 036517 2 IPLYRSHLTILF----R-NLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGN 76 (78)
Q Consensus 2 ~p~~~~~l~~l~----~-~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~ 76 (78)
+|..+..++.|+ + .|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+++
T Consensus 68 ~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 147 (313)
T 1ogq_A 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS 147 (313)
T ss_dssp CCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGG
T ss_pred cChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhc
Confidence 566777777776 5 48888889999999999999999999998888999999999999999999999888877765
Q ss_pred C
Q 036517 77 L 77 (78)
Q Consensus 77 l 77 (78)
+
T Consensus 148 l 148 (313)
T 1ogq_A 148 L 148 (313)
T ss_dssp C
T ss_pred C
Confidence 4
No 7
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.41 E-value=1.2e-12 Score=69.95 Aligned_cols=70 Identities=21% Similarity=0.254 Sum_probs=49.4
Q ss_pred CCcccchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCC
Q 036517 2 IPLYRSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPT 72 (78)
Q Consensus 2 ~p~~~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~ 72 (78)
+|..+..++.|+ ++|.+++..+..|..+++|+.|++++|.+.+..+..|..+++|++|++++|.++ .+|.
T Consensus 46 ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~-~~~~ 119 (193)
T 2wfh_A 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPE 119 (193)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCC-BCCT
T ss_pred hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCC-eeCh
Confidence 455555555555 777777666666777788888888888777666667777788888888888877 5554
No 8
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.41 E-value=8.8e-13 Score=69.23 Aligned_cols=75 Identities=28% Similarity=0.372 Sum_probs=54.2
Q ss_pred CCccc-chhhhcc-CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCC-CCcCC
Q 036517 2 IPLYR-SHLTILF-RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPT-SFGNL 77 (78)
Q Consensus 2 ~p~~~-~~l~~l~-~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~-~~~~l 77 (78)
+|..+ ..++.|. ++|.+++..|..+..+++|+.|++++|.+.+..+..|..+++|++|++++|.++ .+|. .+..+
T Consensus 24 ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l 101 (170)
T 3g39_A 24 VPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK-SIPRGAFDNL 101 (170)
T ss_dssp CCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTC
T ss_pred cCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccC-EeCHHHhcCC
Confidence 45444 2344455 888888777777888888888888888888555566788888888888888888 4544 45543
No 9
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.40 E-value=1.2e-12 Score=69.03 Aligned_cols=75 Identities=31% Similarity=0.424 Sum_probs=55.4
Q ss_pred CCccc-chhhhcc-CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCC-CcCC
Q 036517 2 IPLYR-SHLTILF-RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTS-FGNL 77 (78)
Q Consensus 2 ~p~~~-~~l~~l~-~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~-~~~l 77 (78)
+|..+ ..++.|. ++|.+++..|..+..+++|+.|++++|.+.+..+..|..+++|++|++++|.++ .+|.. +.++
T Consensus 27 iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l 104 (174)
T 2r9u_A 27 VPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK-SIPRGAFDNL 104 (174)
T ss_dssp CCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTC
T ss_pred cCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccc-eeCHHHhccc
Confidence 45444 2344555 888888777778888999999999999988544455788889999999999888 55553 5543
No 10
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.40 E-value=7.9e-13 Score=75.47 Aligned_cols=71 Identities=17% Similarity=0.044 Sum_probs=60.1
Q ss_pred CCcccchhhhcc----CC-ceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCC
Q 036517 2 IPLYRSHLTILF----RN-LYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSF 74 (78)
Q Consensus 2 ~p~~~~~l~~l~----~~-n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~ 74 (78)
+|. +..++.|+ ++ |.+++..+..|..+++|+.|++++|.+.+..|..|..+++|+.|+|++|.+. .+|..+
T Consensus 24 ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~ 99 (347)
T 2ifg_A 24 LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKT 99 (347)
T ss_dssp TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCSTT
T ss_pred cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccc-eeCHHH
Confidence 566 66655555 75 9999877788999999999999999999888889999999999999999999 666543
No 11
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.36 E-value=2.2e-12 Score=70.03 Aligned_cols=61 Identities=18% Similarity=0.168 Sum_probs=30.3
Q ss_pred CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCC
Q 036517 14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSF 74 (78)
Q Consensus 14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~ 74 (78)
++|.+++..+..+..+++|+.|++++|.+.+..+..|..+++|++|++++|.+.+..|..+
T Consensus 65 ~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 125 (220)
T 2v70_A 65 SNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSF 125 (220)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSS
T ss_pred CCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHc
Confidence 4555554444445555555555555555554444445555555555555555553333333
No 12
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.35 E-value=2.8e-12 Score=73.10 Aligned_cols=75 Identities=21% Similarity=0.211 Sum_probs=45.1
Q ss_pred CCcccchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCcCC
Q 036517 2 IPLYRSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNL 77 (78)
Q Consensus 2 ~p~~~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l 77 (78)
+|..+..++.|+ ++|.++ .+|..+..+++|+.|++++|.+.+.+|..++.+++|+.|++++|.+.+.+|..++++
T Consensus 198 lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l 276 (328)
T 4fcg_A 198 LPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRL 276 (328)
T ss_dssp CCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGC
T ss_pred chHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcC
Confidence 444455554444 556666 345556666666666666666666666666666666666666666666666555443
No 13
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.35 E-value=2.3e-12 Score=79.88 Aligned_cols=73 Identities=30% Similarity=0.392 Sum_probs=56.2
Q ss_pred CCcccchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCcCC
Q 036517 2 IPLYRSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNL 77 (78)
Q Consensus 2 ~p~~~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l 77 (78)
+|..+..++.|+ ++|.++ .+|..+..+++|+.|++++|.+. .+|..|+.+++|++|+|++|.+. .+|..|+++
T Consensus 239 l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l 315 (727)
T 4b8c_D 239 ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNL 315 (727)
T ss_dssp CCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSC
T ss_pred CChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcC
Confidence 455555555555 778887 77878888888888888888888 77888888888888888888887 788777665
No 14
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.34 E-value=3.7e-12 Score=76.64 Aligned_cols=75 Identities=19% Similarity=0.141 Sum_probs=62.3
Q ss_pred Ccccchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCcCC
Q 036517 3 PLYRSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNL 77 (78)
Q Consensus 3 p~~~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l 77 (78)
|..+..++.|+ ++|.+++..|..|..+++|+.|++++|++.+..|..|..+++|++|++++|.+++..|..+..+
T Consensus 487 ~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l 565 (635)
T 4g8a_A 487 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 565 (635)
T ss_dssp CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCC
T ss_pred chhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhh
Confidence 44455555555 8899998888899999999999999999997777889999999999999999997777766543
No 15
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.33 E-value=9.9e-12 Score=67.48 Aligned_cols=73 Identities=18% Similarity=0.120 Sum_probs=58.9
Q ss_pred ccchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCcCC
Q 036517 5 YRSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNL 77 (78)
Q Consensus 5 ~~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l 77 (78)
.+..++.|+ ++|.+++..+..+..+++|+.|++++|.+.+..|..|..+++|+.|++++|.+++..|..+..+
T Consensus 76 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 152 (220)
T 2v70_A 76 AFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTL 152 (220)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTC
T ss_pred HhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCC
Confidence 455556565 8888887666678889999999999999997778888899999999999999986657766654
No 16
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.32 E-value=6.7e-12 Score=67.05 Aligned_cols=75 Identities=28% Similarity=0.376 Sum_probs=60.6
Q ss_pred CCccc-chhhhcc-CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCcCC
Q 036517 2 IPLYR-SHLTILF-RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNL 77 (78)
Q Consensus 2 ~p~~~-~~l~~l~-~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l 77 (78)
+|..+ ..++.|. ++|.++ .+|..+..+++|+.|++++|.+.+..+..|..+++|++|++++|.+++..|..|..+
T Consensus 25 ip~~~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l 101 (193)
T 2wfh_A 25 LPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGL 101 (193)
T ss_dssp CCSCCCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTC
T ss_pred CCCCCCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCC
Confidence 45444 3455566 889988 788889999999999999999997777889999999999999999995555556544
No 17
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.31 E-value=8e-12 Score=66.59 Aligned_cols=76 Identities=26% Similarity=0.257 Sum_probs=61.0
Q ss_pred CCcccc-hhhhcc-CCceeeecCCc-cccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCcCC
Q 036517 2 IPLYRS-HLTILF-RNLYLTGSVPP-EFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNL 77 (78)
Q Consensus 2 ~p~~~~-~l~~l~-~~n~~~~~~p~-~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l 77 (78)
+|..+. .++.|. ++|.+++..+. .+..+++|+.|++++|.+++..|..|..+++|++|++++|.+++..|..+..+
T Consensus 23 ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 101 (192)
T 1w8a_A 23 IPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGL 101 (192)
T ss_dssp CCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTC
T ss_pred CccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCC
Confidence 455443 455555 88999866554 48899999999999999998889999999999999999999996666556554
No 18
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.31 E-value=1e-11 Score=67.39 Aligned_cols=54 Identities=24% Similarity=0.185 Sum_probs=26.7
Q ss_pred CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517 14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS 67 (78)
Q Consensus 14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~ 67 (78)
++|.+++..|..|..+++|+.|++++|.+....+..|..+++|++|++++|.+.
T Consensus 64 s~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~ 117 (220)
T 2v9t_B 64 SNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN 117 (220)
T ss_dssp CSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCC
Confidence 455555444555555555555555555555222233444455555555555544
No 19
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.31 E-value=4e-12 Score=77.66 Aligned_cols=60 Identities=20% Similarity=0.184 Sum_probs=33.4
Q ss_pred eeeecCCccccCCCCCceEecccCcCCCC-----------------Cchhhh--CCCCCCEEEcccCcceeccCCCCcCC
Q 036517 17 YLTGSVPPEFGDSLHLQVFYLENNKRTDS-----------------IPESLG--RFGCLIKLNLARNKLSGSIPTSFGNL 77 (78)
Q Consensus 17 ~~~~~~p~~~~~~~~L~~l~l~~n~~~~~-----------------~p~~~~--~l~~L~~L~l~~n~l~~~~p~~~~~l 77 (78)
.+++ +|.+++.+++|+.|++++|.+.+. +|..++ .+++|++|++++|.+.+.+|..++++
T Consensus 194 ~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 272 (636)
T 4eco_A 194 NITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL 272 (636)
T ss_dssp EEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTC
T ss_pred CCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcC
Confidence 4454 555555555555555555555543 555555 55555555555555555555555443
No 20
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.30 E-value=4.6e-13 Score=81.73 Aligned_cols=73 Identities=18% Similarity=0.180 Sum_probs=53.8
Q ss_pred CCcccchhhhcc----CCceeeec-----------------CCcccc--CCCCCceEecccCcCCCCCchhhhCCCCCCE
Q 036517 2 IPLYRSHLTILF----RNLYLTGS-----------------VPPEFG--DSLHLQVFYLENNKRTDSIPESLGRFGCLIK 58 (78)
Q Consensus 2 ~p~~~~~l~~l~----~~n~~~~~-----------------~p~~~~--~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~ 58 (78)
+|..+++++.|+ ++|.+++. +|+.++ .+++|++|++++|.+.+.+|..++.+++|++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 466666666666 67777764 777777 7888888888888777777877777888888
Q ss_pred EEcccCc-cee-ccCCCC
Q 036517 59 LNLARNK-LSG-SIPTSF 74 (78)
Q Consensus 59 L~l~~n~-l~~-~~p~~~ 74 (78)
|++++|. +++ .+|..+
T Consensus 278 L~Ls~n~~l~~~~lp~~~ 295 (636)
T 4eco_A 278 INVACNRGISGEQLKDDW 295 (636)
T ss_dssp EECTTCTTSCHHHHHHHH
T ss_pred EECcCCCCCccccchHHH
Confidence 8888877 776 566544
No 21
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.30 E-value=3.4e-12 Score=76.84 Aligned_cols=59 Identities=19% Similarity=-0.013 Sum_probs=29.3
Q ss_pred hhhcc-CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517 9 LTILF-RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS 67 (78)
Q Consensus 9 l~~l~-~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~ 67 (78)
++.|. ++|.+++..+.+|..+++|++|++++|.+++..+..|.++++|++|++++|+++
T Consensus 54 ~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~ 113 (635)
T 4g8a_A 54 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 113 (635)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred CCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC
Confidence 33444 555555444444555555555555555555333344555555555555555554
No 22
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.29 E-value=1.4e-11 Score=66.89 Aligned_cols=75 Identities=24% Similarity=0.154 Sum_probs=57.6
Q ss_pred Ccccchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCcCC
Q 036517 3 PLYRSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNL 77 (78)
Q Consensus 3 p~~~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l 77 (78)
|..+..++.|+ ++|.++...+..+..+++|+.|++++|.+.+..|..|..+++|++|++++|.+++..+..+..+
T Consensus 73 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 151 (220)
T 2v9t_B 73 PDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL 151 (220)
T ss_dssp TTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred HHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCC
Confidence 44566666665 8899985544457889999999999999997778889999999999999999984444445443
No 23
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.28 E-value=1.4e-11 Score=67.13 Aligned_cols=41 Identities=27% Similarity=0.229 Sum_probs=16.1
Q ss_pred cCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517 27 GDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS 67 (78)
Q Consensus 27 ~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~ 67 (78)
..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+.
T Consensus 85 ~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~ 125 (229)
T 3e6j_A 85 DSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT 125 (229)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred ccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc
Confidence 34444444444444444222223333344444444444433
No 24
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.24 E-value=2.6e-11 Score=73.62 Aligned_cols=52 Identities=29% Similarity=0.253 Sum_probs=23.9
Q ss_pred CCceeeecCCccccCCCCCceEecccCcCCCCC-chhhhCCCCCCEEEcccCcce
Q 036517 14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSI-PESLGRFGCLIKLNLARNKLS 67 (78)
Q Consensus 14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~-p~~~~~l~~L~~L~l~~n~l~ 67 (78)
++|.+++ +| .+..+++|+.|++++|.+.+.. |..++.+++|+.|++++|.+.
T Consensus 494 s~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~ 546 (567)
T 1dce_A 494 SDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546 (567)
T ss_dssp CSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred CCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCC
Confidence 4444442 33 3444444444444444444332 444444444555555544444
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.24 E-value=3e-11 Score=70.80 Aligned_cols=62 Identities=18% Similarity=0.049 Sum_probs=33.9
Q ss_pred CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCc
Q 036517 14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFG 75 (78)
Q Consensus 14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~ 75 (78)
++|.+++..|..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+..|..+.
T Consensus 307 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 368 (455)
T 3v47_A 307 AQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFL 368 (455)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred CCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcc
Confidence 55555555555555555555665555555544455555555555555555555544444443
No 26
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.24 E-value=2.5e-11 Score=63.17 Aligned_cols=64 Identities=22% Similarity=0.184 Sum_probs=41.3
Q ss_pred CCcccchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517 2 IPLYRSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS 67 (78)
Q Consensus 2 ~p~~~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~ 67 (78)
+|..+..++.|+ ++|.+++. ..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|.++
T Consensus 41 i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 108 (168)
T 2ell_A 41 IEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108 (168)
T ss_dssp CSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCC
T ss_pred HHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccC
Confidence 344444455554 66666643 55666777777777777777556666666777777777777766
No 27
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.24 E-value=3.4e-12 Score=79.16 Aligned_cols=72 Identities=28% Similarity=0.391 Sum_probs=63.9
Q ss_pred CCCcccchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCC
Q 036517 1 MIPLYRSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSF 74 (78)
Q Consensus 1 ~~p~~~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~ 74 (78)
.+|..+..++.|+ ++|.++ .+|..++.+++|+.|++++|.+. .+|..|+.+++|++|++++|.+.+.+|..+
T Consensus 261 ~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 261 ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 3688888888777 899999 78999999999999999999998 889889999999999999999997776544
No 28
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.23 E-value=2.1e-12 Score=81.49 Aligned_cols=74 Identities=24% Similarity=0.189 Sum_probs=56.9
Q ss_pred CCcccchhhhcc----CCceeee-----------------cCCcccc--CCCCCceEecccCcCCCCCchhhhCCCCCCE
Q 036517 2 IPLYRSHLTILF----RNLYLTG-----------------SVPPEFG--DSLHLQVFYLENNKRTDSIPESLGRFGCLIK 58 (78)
Q Consensus 2 ~p~~~~~l~~l~----~~n~~~~-----------------~~p~~~~--~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~ 58 (78)
+|..+++++.|+ ++|.+++ .+|+.++ .+++|+.|++++|.+.+.+|..++.+++|+.
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 577777777776 7778886 3788776 8888888888888888788888888888888
Q ss_pred EEcccCc-cee-ccCCCCc
Q 036517 59 LNLARNK-LSG-SIPTSFG 75 (78)
Q Consensus 59 L~l~~n~-l~~-~~p~~~~ 75 (78)
|++++|. +++ .+|..++
T Consensus 520 L~Ls~N~~lsg~~iP~~i~ 538 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWT 538 (876)
T ss_dssp EECTTCTTSCHHHHHHHHH
T ss_pred EECcCCCCcccccchHHHH
Confidence 8888887 776 5665443
No 29
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.22 E-value=4.3e-11 Score=65.27 Aligned_cols=74 Identities=23% Similarity=0.367 Sum_probs=58.4
Q ss_pred CCccc-chhhhcc-CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCC-CCcC
Q 036517 2 IPLYR-SHLTILF-RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPT-SFGN 76 (78)
Q Consensus 2 ~p~~~-~~l~~l~-~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~-~~~~ 76 (78)
+|..+ .+++.|. ++|.+++..|..+..+++|+.|++++|.+....+..|..+++|++|++++|.++ .+|. .+..
T Consensus 34 ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~~ 110 (229)
T 3e6j_A 34 VPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDR 110 (229)
T ss_dssp CCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTT
T ss_pred cCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCC-ccChhHhCc
Confidence 45444 3455555 899999888888999999999999999998554566899999999999999999 5554 3443
No 30
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.22 E-value=5.8e-11 Score=66.74 Aligned_cols=74 Identities=19% Similarity=0.134 Sum_probs=51.2
Q ss_pred Ccccchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCcC
Q 036517 3 PLYRSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGN 76 (78)
Q Consensus 3 p~~~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~ 76 (78)
|..+..++.|+ ++|.+++..|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+..
T Consensus 168 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 245 (306)
T 2z66_A 168 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 245 (306)
T ss_dssp CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCC
T ss_pred hhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHh
Confidence 44444444454 677777666777777778888888888777555556777778888888888877666655554
No 31
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.21 E-value=1.8e-11 Score=73.87 Aligned_cols=73 Identities=14% Similarity=0.027 Sum_probs=48.2
Q ss_pred Ccccchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCcC
Q 036517 3 PLYRSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGN 76 (78)
Q Consensus 3 p~~~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~ 76 (78)
|..+..++.|+ ++|.+++..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.++ .+|..+..
T Consensus 466 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~ 542 (606)
T 3vq2_A 466 SNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQH 542 (606)
T ss_dssp CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGG
T ss_pred HHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhh
Confidence 34444444444 666777666666777777777777777777666677777777777777777776 66655443
No 32
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.21 E-value=3.2e-11 Score=73.18 Aligned_cols=72 Identities=18% Similarity=0.235 Sum_probs=61.9
Q ss_pred CCcccchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceecc-CCCCcC
Q 036517 2 IPLYRSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSI-PTSFGN 76 (78)
Q Consensus 2 ~p~~~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~-p~~~~~ 76 (78)
+|. +..++.|+ ++|.++ .+|..++.+++|+.|++++|.+++ +| .++.+++|+.|++++|.+++.. |..++.
T Consensus 456 lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~ 531 (567)
T 1dce_A 456 LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVS 531 (567)
T ss_dssp CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGG
T ss_pred CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhc
Confidence 454 66666666 899999 889999999999999999999995 77 8999999999999999999554 887776
Q ss_pred C
Q 036517 77 L 77 (78)
Q Consensus 77 l 77 (78)
+
T Consensus 532 l 532 (567)
T 1dce_A 532 C 532 (567)
T ss_dssp C
T ss_pred C
Confidence 5
No 33
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.20 E-value=7.7e-11 Score=61.84 Aligned_cols=58 Identities=22% Similarity=0.299 Sum_probs=34.9
Q ss_pred CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCC
Q 036517 14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPT 72 (78)
Q Consensus 14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~ 72 (78)
++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+. .+|.
T Consensus 60 ~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~ 117 (177)
T 2o6r_A 60 SQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLK-SVPD 117 (177)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCT
T ss_pred CCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcce-EeCH
Confidence 566666444444566666666666666666444444566666666666666666 4443
No 34
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.20 E-value=2e-11 Score=62.46 Aligned_cols=52 Identities=23% Similarity=0.248 Sum_probs=32.8
Q ss_pred CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517 14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS 67 (78)
Q Consensus 14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~ 67 (78)
++|.+++. ..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|.+.
T Consensus 50 ~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~ 101 (149)
T 2je0_A 50 INVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101 (149)
T ss_dssp TTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCC
T ss_pred cCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCC
Confidence 55666543 45666666666666666666556666666666666666666665
No 35
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.20 E-value=3.3e-11 Score=72.76 Aligned_cols=63 Identities=16% Similarity=0.015 Sum_probs=37.1
Q ss_pred CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCcC
Q 036517 14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGN 76 (78)
Q Consensus 14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~ 76 (78)
++|.+++..|..|..+++|++|++++|.+.+..|..|..+++|++|++++|.+.+..|..+++
T Consensus 41 s~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 103 (606)
T 3t6q_A 41 SFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSG 103 (606)
T ss_dssp TTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSS
T ss_pred cCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcc
Confidence 556666555555666666666666666665555555666666666666666665444544443
No 36
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.20 E-value=5.6e-11 Score=62.32 Aligned_cols=67 Identities=21% Similarity=0.136 Sum_probs=55.4
Q ss_pred Ccccchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceec
Q 036517 3 PLYRSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGS 69 (78)
Q Consensus 3 p~~~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~ 69 (78)
|..+..++.|+ ++|.+++..+..|..+++|+.|++++|.+.+..+..|..+++|++|++++|.+...
T Consensus 47 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 47 PGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp TTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred hhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 44566666666 89999976666688999999999999999965566799999999999999988744
No 37
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.19 E-value=8.3e-11 Score=61.71 Aligned_cols=69 Identities=20% Similarity=0.108 Sum_probs=54.6
Q ss_pred hhhhcc-CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCcC
Q 036517 8 HLTILF-RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGN 76 (78)
Q Consensus 8 ~l~~l~-~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~ 76 (78)
.++.|. ++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 98 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDK 98 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhC
Confidence 455555 888998666666889999999999999999665666899999999999999999444434444
No 38
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.18 E-value=9.7e-11 Score=64.44 Aligned_cols=54 Identities=24% Similarity=0.146 Sum_probs=22.0
Q ss_pred CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517 14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS 67 (78)
Q Consensus 14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~ 67 (78)
++|.+++..+..+..+++|+.|++++|.+.+..+..|..+++|++|++++|.+.
T Consensus 67 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 120 (251)
T 3m19_A 67 DYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK 120 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCC
Confidence 344444333333444444444444444444322233334444444444444443
No 39
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.18 E-value=1e-10 Score=64.35 Aligned_cols=54 Identities=19% Similarity=0.191 Sum_probs=25.9
Q ss_pred CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517 14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS 67 (78)
Q Consensus 14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~ 67 (78)
++|.+++..+..+..+++|+.|++++|.+.+..+..|..+++|++|++++|.+.
T Consensus 115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 168 (251)
T 3m19_A 115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168 (251)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC
Confidence 444444333333444555555555555555333334555555555555555555
No 40
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.18 E-value=9.3e-11 Score=70.07 Aligned_cols=73 Identities=18% Similarity=0.100 Sum_probs=49.0
Q ss_pred cccchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCccee-ccCCCCcC
Q 036517 4 LYRSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSG-SIPTSFGN 76 (78)
Q Consensus 4 ~~~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~ 76 (78)
..+..++.|+ ++|.+++..|..+..+++|+.|++++|.+.+..|..|+.+++|++|++++|.+.+ .+|..+++
T Consensus 44 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 121 (549)
T 2z81_A 44 GDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN 121 (549)
T ss_dssp STTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTT
T ss_pred hhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhc
Confidence 3444555554 6777776666677777777777777777776555667777778888888777763 23444444
No 41
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.17 E-value=1.3e-10 Score=65.33 Aligned_cols=54 Identities=30% Similarity=0.191 Sum_probs=27.1
Q ss_pred CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517 14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS 67 (78)
Q Consensus 14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~ 67 (78)
++|.+++..+..|..+++|+.|++++|.+.+..+..|..+++|+.|++++|.++
T Consensus 108 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 161 (290)
T 1p9a_G 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161 (290)
T ss_dssp CSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred CCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence 455555433344555555555555555555333333444555555555555554
No 42
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.16 E-value=1.1e-10 Score=61.53 Aligned_cols=65 Identities=20% Similarity=0.156 Sum_probs=53.4
Q ss_pred Ccccchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517 3 PLYRSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS 67 (78)
Q Consensus 3 p~~~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~ 67 (78)
|..+..++.|+ ++|.+++..+..+..+++|+.|++++|.+.+..+..|..+++|++|++++|.+.
T Consensus 50 ~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 50 PGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred HHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 44566666666 899999655555789999999999999999554556999999999999999988
No 43
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.16 E-value=1.2e-10 Score=70.37 Aligned_cols=54 Identities=19% Similarity=0.153 Sum_probs=26.6
Q ss_pred CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517 14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS 67 (78)
Q Consensus 14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~ 67 (78)
++|.+++..|..|..+++|++|++++|.+.+..|..|+.+++|++|++++|.+.
T Consensus 64 s~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 117 (606)
T 3vq2_A 64 SRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA 117 (606)
T ss_dssp TTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCC
T ss_pred CCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccc
Confidence 444444444444555555555555555554444444555555555555544444
No 44
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.16 E-value=1.6e-10 Score=64.25 Aligned_cols=54 Identities=19% Similarity=0.132 Sum_probs=24.5
Q ss_pred CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517 14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS 67 (78)
Q Consensus 14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~ 67 (78)
++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus 141 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 141 AHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence 444444333333444444444444444444333333444455555555555544
No 45
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.15 E-value=1.9e-10 Score=61.61 Aligned_cols=41 Identities=20% Similarity=0.203 Sum_probs=16.3
Q ss_pred cCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517 27 GDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS 67 (78)
Q Consensus 27 ~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~ 67 (78)
..+++|++|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus 73 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 113 (208)
T 2o6s_A 73 NKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ 113 (208)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCc
Confidence 34444444444444444222222334444444444444443
No 46
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.14 E-value=2.1e-10 Score=61.50 Aligned_cols=65 Identities=23% Similarity=0.237 Sum_probs=47.6
Q ss_pred chhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCC
Q 036517 7 SHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPT 72 (78)
Q Consensus 7 ~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~ 72 (78)
..++.|+ ++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+. .+|.
T Consensus 73 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~ 141 (208)
T 2o6s_A 73 NKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPD 141 (208)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCT
T ss_pred CCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc-eeCH
Confidence 4445554 778888555555778888888888888888555556788888888888888888 4444
No 47
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.14 E-value=1.1e-10 Score=68.44 Aligned_cols=54 Identities=22% Similarity=0.161 Sum_probs=34.7
Q ss_pred CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517 14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS 67 (78)
Q Consensus 14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~ 67 (78)
++|.+++..+..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.++
T Consensus 331 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 384 (455)
T 3v47_A 331 SQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK 384 (455)
T ss_dssp CSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccc
Confidence 566666555556666666666666666666555666666666666666666666
No 48
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.14 E-value=1.2e-10 Score=64.65 Aligned_cols=66 Identities=18% Similarity=-0.000 Sum_probs=35.0
Q ss_pred hhhcc-CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCC
Q 036517 9 LTILF-RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSF 74 (78)
Q Consensus 9 l~~l~-~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~ 74 (78)
++.|. ++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+
T Consensus 30 l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 96 (276)
T 2z62_A 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF 96 (276)
T ss_dssp CCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTT
T ss_pred ccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhh
Confidence 34444 5555554444455556666666666665554444455555566666666665553333333
No 49
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.13 E-value=2.3e-10 Score=64.36 Aligned_cols=73 Identities=25% Similarity=0.144 Sum_probs=59.1
Q ss_pred cccchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCcCC
Q 036517 4 LYRSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNL 77 (78)
Q Consensus 4 ~~~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l 77 (78)
..+..++.|+ ++|.+++..+..+..+++|+.|++++|.+++..+..|..+++|+.|++++|.++ .+|..+..+
T Consensus 118 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~ 194 (290)
T 1p9a_G 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGS 194 (290)
T ss_dssp STTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTT
T ss_pred HHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhccc
Confidence 3455666665 889999766666889999999999999999554556788999999999999999 888876653
No 50
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.13 E-value=2.5e-10 Score=63.46 Aligned_cols=54 Identities=19% Similarity=0.178 Sum_probs=30.7
Q ss_pred CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517 14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS 67 (78)
Q Consensus 14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~ 67 (78)
++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 170 (272)
T 3rfs_A 117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ 170 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC
Confidence 555555444444555666666666666665444444555666666666666665
No 51
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.12 E-value=4.3e-11 Score=71.50 Aligned_cols=76 Identities=24% Similarity=0.228 Sum_probs=61.7
Q ss_pred CCccc-chhhhcc-CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCcCC
Q 036517 2 IPLYR-SHLTILF-RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNL 77 (78)
Q Consensus 2 ~p~~~-~~l~~l~-~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l 77 (78)
+|..+ ..++.|. ++|.+++..|..+..+++|++|++++|.+.+..|..|..+++|++|++++|.+.+..|..++++
T Consensus 20 ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 97 (549)
T 2z81_A 20 IPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPL 97 (549)
T ss_dssp CCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTC
T ss_pred ccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccC
Confidence 56544 3455566 8999998888889999999999999999997777889999999999999999995444335544
No 52
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.11 E-value=2.1e-10 Score=66.07 Aligned_cols=54 Identities=17% Similarity=0.026 Sum_probs=24.9
Q ss_pred CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517 14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS 67 (78)
Q Consensus 14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~ 67 (78)
++|.+++..+..|..+++|+.|++++|.+....+..|..+++|+.|++++|.+.
T Consensus 72 ~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~ 125 (361)
T 2xot_A 72 SHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV 125 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCccc
Confidence 444444443344444455555555555444333333444444444444444444
No 53
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.11 E-value=2.5e-10 Score=63.67 Aligned_cols=54 Identities=26% Similarity=0.289 Sum_probs=23.3
Q ss_pred CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517 14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS 67 (78)
Q Consensus 14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~ 67 (78)
++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus 113 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 166 (285)
T 1ozn_A 113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS 166 (285)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc
Confidence 444444333344444444444444444444322233444444444444444444
No 54
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.11 E-value=2.9e-10 Score=67.14 Aligned_cols=61 Identities=18% Similarity=0.228 Sum_probs=30.2
Q ss_pred CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCC
Q 036517 14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSF 74 (78)
Q Consensus 14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~ 74 (78)
++|.+++..|..+..+++|+.|++++|.+....+..|..+++|++|++++|.+.+..|..+
T Consensus 64 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~ 124 (477)
T 2id5_A 64 NENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMF 124 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTT
T ss_pred CCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHc
Confidence 4455554445555555555555555555553222334555555555555555553333333
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.10 E-value=2.1e-10 Score=67.60 Aligned_cols=54 Identities=17% Similarity=0.035 Sum_probs=25.4
Q ss_pred CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517 14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS 67 (78)
Q Consensus 14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~ 67 (78)
++|.+++..+..+..+++|+.|++++|.+....+..|..+++|++|++++|.+.
T Consensus 107 s~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 160 (452)
T 3zyi_A 107 GRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE 160 (452)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCC
T ss_pred CCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcc
Confidence 444444444444444445555555555444333333444555555555555544
No 56
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.10 E-value=1.9e-10 Score=69.48 Aligned_cols=72 Identities=15% Similarity=-0.010 Sum_probs=48.2
Q ss_pred cccchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCc
Q 036517 4 LYRSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFG 75 (78)
Q Consensus 4 ~~~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~ 75 (78)
..+..++.|+ ++|.+++..|..|..+++|+.|++++|.+.+..|..|+.+++|++|++++|.+.+..|..++
T Consensus 51 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~ 126 (606)
T 3t6q_A 51 TTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLH 126 (606)
T ss_dssp TTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCT
T ss_pred hHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhc
Confidence 3455555555 67777766677777777777777777777766666777777777777777777633234343
No 57
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.10 E-value=3.2e-10 Score=68.84 Aligned_cols=62 Identities=19% Similarity=0.121 Sum_probs=28.3
Q ss_pred CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCc
Q 036517 14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFG 75 (78)
Q Consensus 14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~ 75 (78)
++|.+++..|..++.+++|+.|++++|.+.+..+..|+.+++|++|++++|.+.+..|..++
T Consensus 107 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 168 (597)
T 3oja_B 107 GFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ 168 (597)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTT
T ss_pred CCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhh
Confidence 44444444344444455555555555555422222334555555555555555533333333
No 58
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.09 E-value=1.7e-10 Score=61.53 Aligned_cols=52 Identities=15% Similarity=0.205 Sum_probs=31.6
Q ss_pred CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCc
Q 036517 14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNK 65 (78)
Q Consensus 14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~ 65 (78)
++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.
T Consensus 96 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~ 147 (197)
T 4ezg_A 96 MGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG 147 (197)
T ss_dssp ECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCT
T ss_pred ECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCC
Confidence 5556655455556666666666666666665555556666666666666665
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.08 E-value=5.2e-10 Score=62.35 Aligned_cols=62 Identities=19% Similarity=0.265 Sum_probs=28.2
Q ss_pred CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCc
Q 036517 14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFG 75 (78)
Q Consensus 14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~ 75 (78)
++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+.
T Consensus 137 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 198 (285)
T 1ozn_A 137 QDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR 198 (285)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred CCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHcc
Confidence 44444433333344455555555555554433233344455555555555555433344333
No 60
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.08 E-value=2.3e-10 Score=68.51 Aligned_cols=54 Identities=20% Similarity=0.276 Sum_probs=26.6
Q ss_pred CCceee-ecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517 14 RNLYLT-GSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS 67 (78)
Q Consensus 14 ~~n~~~-~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~ 67 (78)
++|.++ +.+|..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.++
T Consensus 453 ~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 507 (570)
T 2z63_A 453 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK 507 (570)
T ss_dssp TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred cCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCC
Confidence 444443 234444445555555555555554444444555555555555555555
No 61
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.08 E-value=2.9e-11 Score=76.42 Aligned_cols=75 Identities=19% Similarity=0.156 Sum_probs=57.5
Q ss_pred CCcccc--hhhhcc----CCceeeecCCccccCCCCCceEecccCc-CCC-CCchhhhCCC-------CCCEEEcccCcc
Q 036517 2 IPLYRS--HLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNK-RTD-SIPESLGRFG-------CLIKLNLARNKL 66 (78)
Q Consensus 2 ~p~~~~--~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~-~~~-~~p~~~~~l~-------~L~~L~l~~n~l 66 (78)
+|..++ .++.|+ ++|.+.+.+|..+..+++|+.|++++|. +++ .+|..++.+. +|+.|++++|.+
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L 560 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence 677666 777776 7788888888888888899999998887 877 6777666554 788888888888
Q ss_pred eeccCC--CCcCC
Q 036517 67 SGSIPT--SFGNL 77 (78)
Q Consensus 67 ~~~~p~--~~~~l 77 (78)
. .+|. .++++
T Consensus 561 ~-~ip~~~~l~~L 572 (876)
T 4ecn_A 561 E-EFPASASLQKM 572 (876)
T ss_dssp C-BCCCHHHHTTC
T ss_pred C-ccCChhhhhcC
Confidence 7 7777 55544
No 62
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.08 E-value=5.8e-10 Score=63.84 Aligned_cols=67 Identities=15% Similarity=0.031 Sum_probs=46.8
Q ss_pred ccchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCC
Q 036517 5 YRSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPT 72 (78)
Q Consensus 5 ~~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~ 72 (78)
.+..++.|+ ++|.+++..+..+..+++|+.|++++|.+.+..+..++.+++|++|++++|.+. .+|.
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~ 141 (353)
T 2z80_A 71 DLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGE 141 (353)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCS
T ss_pred HhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCc
Confidence 344444554 677777666667777888888888888877444444777888888888888777 5655
No 63
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.08 E-value=3.3e-10 Score=65.24 Aligned_cols=76 Identities=18% Similarity=0.087 Sum_probs=59.7
Q ss_pred CCcccch-hhhcc-CCceeeecCCcccc-CCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCcCC
Q 036517 2 IPLYRSH-LTILF-RNLYLTGSVPPEFG-DSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNL 77 (78)
Q Consensus 2 ~p~~~~~-l~~l~-~~n~~~~~~p~~~~-~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l 77 (78)
+|..+.. ++.|. ++|.+++..+..+. .+++|+.|++++|.+.+..+..|..+++|++|++++|.+....+..|..+
T Consensus 33 iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 111 (361)
T 2xot_A 33 VPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDL 111 (361)
T ss_dssp CCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred cCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCC
Confidence 4554433 45556 89999987777777 89999999999999997667789999999999999999994444445443
No 64
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.07 E-value=5.1e-10 Score=65.93 Aligned_cols=74 Identities=23% Similarity=0.218 Sum_probs=58.6
Q ss_pred CCccc-chhhhcc-CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCC-CCcC
Q 036517 2 IPLYR-SHLTILF-RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPT-SFGN 76 (78)
Q Consensus 2 ~p~~~-~~l~~l~-~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~-~~~~ 76 (78)
+|..+ .+++.|. ++|.+++..+..|..+++|+.|++++|.+.+..+..|..+++|++|++++|.+. .+|. .+..
T Consensus 69 iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~ 145 (452)
T 3zyi_A 69 VPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEY 145 (452)
T ss_dssp CCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS-BCCTTTSSS
T ss_pred cCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCC-ccChhhhcc
Confidence 45444 3455666 888999888888999999999999999998777788999999999999999998 5554 3543
No 65
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.05 E-value=5.4e-10 Score=63.41 Aligned_cols=66 Identities=24% Similarity=0.328 Sum_probs=53.9
Q ss_pred hhhhcc-CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCC
Q 036517 8 HLTILF-RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSF 74 (78)
Q Consensus 8 ~l~~l~-~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~ 74 (78)
.++.|. ++|.+++..+..+..+++|++|++++|.+.+..|..|..+++|++|++++|.+. .+|..+
T Consensus 53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~ 119 (330)
T 1xku_A 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM 119 (330)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSC
T ss_pred CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhh
Confidence 344555 788888766667889999999999999998777888999999999999999888 777654
No 66
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.05 E-value=2e-10 Score=59.74 Aligned_cols=57 Identities=23% Similarity=0.310 Sum_probs=42.3
Q ss_pred CCceeeecCCccccCCCCCceEecccCcCCCCCc--hhhhCCCCCCEEEcccCcceeccCC
Q 036517 14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIP--ESLGRFGCLIKLNLARNKLSGSIPT 72 (78)
Q Consensus 14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p--~~~~~l~~L~~L~l~~n~l~~~~p~ 72 (78)
++|.+++.+|..+..+++|+.|++++|.+.+ ++ ..+..+++|+.|++++|.+. .+|.
T Consensus 79 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~l~~l~~L~~L~l~~N~l~-~~~~ 137 (168)
T 2ell_A 79 SENRIFGGLDMLAEKLPNLTHLNLSGNKLKD-ISTLEPLKKLECLKSLDLFNCEVT-NLND 137 (168)
T ss_dssp ESCCCCSCCCHHHHHCTTCCEEECBSSSCCS-SGGGGGGSSCSCCCEEECCSSGGG-TSTT
T ss_pred cCCcCchHHHHHHhhCCCCCEEeccCCccCc-chhHHHHhcCCCCCEEEeeCCcCc-chHH
Confidence 7777776666666678888888888888873 33 66777888888888888877 5554
No 67
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.05 E-value=4.7e-10 Score=67.22 Aligned_cols=71 Identities=24% Similarity=0.243 Sum_probs=61.9
Q ss_pred CCcccchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCC
Q 036517 2 IPLYRSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPT 72 (78)
Q Consensus 2 ~p~~~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~ 72 (78)
+|..+..++.|+ ++|.+++..|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+.+|.
T Consensus 462 ~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred chhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 455666666666 89999988899999999999999999999977777899999999999999999987774
No 68
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.05 E-value=4.3e-10 Score=63.91 Aligned_cols=65 Identities=26% Similarity=0.320 Sum_probs=49.1
Q ss_pred hhhcc-CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCC
Q 036517 9 LTILF-RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSF 74 (78)
Q Consensus 9 l~~l~-~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~ 74 (78)
++.|. ++|.+++..+..+..+++|+.|++++|.+.+..|..|..+++|++|++++|.+. .+|..+
T Consensus 56 l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~ 121 (332)
T 2ft3_A 56 TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNL 121 (332)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSC
T ss_pred CeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCccc
Confidence 44444 777777666667888888888888888888666777888888888888888877 666543
No 69
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.04 E-value=6.3e-10 Score=65.38 Aligned_cols=54 Identities=19% Similarity=0.171 Sum_probs=26.8
Q ss_pred CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517 14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS 67 (78)
Q Consensus 14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~ 67 (78)
++|.+++..+..+..+++|+.|++++|.+.+..+..|..+++|++|++++|.++
T Consensus 72 ~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~ 125 (440)
T 3zyj_A 72 HENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT 125 (440)
T ss_dssp CSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCS
T ss_pred cCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCC
Confidence 445555444444555555555555555554333444445555555555555444
No 70
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.04 E-value=9.7e-10 Score=63.57 Aligned_cols=54 Identities=24% Similarity=0.226 Sum_probs=23.2
Q ss_pred CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517 14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS 67 (78)
Q Consensus 14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~ 67 (78)
++|.+++..+..+..+++|+.|++++|.+.+..|..++.+++|++|++++|.+.
T Consensus 77 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 130 (390)
T 3o6n_A 77 NDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS 130 (390)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC
Confidence 344444333334444444444444444444333333444444444444444444
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.04 E-value=1.8e-10 Score=65.10 Aligned_cols=63 Identities=21% Similarity=0.245 Sum_probs=41.6
Q ss_pred CCceeeecCCccc--cCCCCCceEecccCcCCCCCchhhhCC-----CCCCEEEcccCcceeccCCCCcCC
Q 036517 14 RNLYLTGSVPPEF--GDSLHLQVFYLENNKRTDSIPESLGRF-----GCLIKLNLARNKLSGSIPTSFGNL 77 (78)
Q Consensus 14 ~~n~~~~~~p~~~--~~~~~L~~l~l~~n~~~~~~p~~~~~l-----~~L~~L~l~~n~l~~~~p~~~~~l 77 (78)
++|.+++.+|..+ ..+++|+.|++++|.+.+. |..++.+ ++|++|++++|.+.+..|..++++
T Consensus 103 ~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 103 ENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp EEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred cCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 6677776677665 6677777777777777754 6666555 677777777777764444555443
No 72
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.03 E-value=6.3e-10 Score=68.04 Aligned_cols=47 Identities=23% Similarity=0.197 Sum_probs=21.5
Q ss_pred ccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCC
Q 036517 26 FGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPT 72 (78)
Q Consensus 26 ~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~ 72 (78)
|..+++|++|++++|.+.+..|..|+.+++|++|++++|.+.+..|.
T Consensus 93 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 139 (680)
T 1ziw_A 93 FAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG 139 (680)
T ss_dssp TTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCC
T ss_pred hccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCch
Confidence 44444444444444444433334444444555555555444433333
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.03 E-value=1.1e-09 Score=60.80 Aligned_cols=54 Identities=20% Similarity=0.145 Sum_probs=26.2
Q ss_pred CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517 14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS 67 (78)
Q Consensus 14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~ 67 (78)
++|.+++..+..+..+++|+.|++++|.+.+..+..|..+++|++|++++|.++
T Consensus 141 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (270)
T 2o6q_A 141 GYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK 194 (270)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCC
Confidence 444444332233444555555555555555333334555555555555555555
No 74
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.03 E-value=5e-10 Score=62.93 Aligned_cols=54 Identities=17% Similarity=0.231 Sum_probs=29.5
Q ss_pred CCceeee-cCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517 14 RNLYLTG-SVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS 67 (78)
Q Consensus 14 ~~n~~~~-~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~ 67 (78)
++|.+++ ..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.
T Consensus 158 ~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 212 (306)
T 2z66_A 158 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 212 (306)
T ss_dssp TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred CCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccC
Confidence 4455543 34445555555555555555555444555555555666666655555
No 75
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.03 E-value=1.5e-10 Score=59.22 Aligned_cols=66 Identities=23% Similarity=0.204 Sum_probs=55.1
Q ss_pred chhhhcc-CCceee-ecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCC
Q 036517 7 SHLTILF-RNLYLT-GSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSF 74 (78)
Q Consensus 7 ~~l~~l~-~~n~~~-~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~ 74 (78)
.+++.|. ++|.++ +.+|..+..+++|+.|++++|.+.+. ..+..+++|++|++++|.+.+.+|..+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~ 84 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLA 84 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHH
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHh
Confidence 4455566 888888 78888889999999999999999955 778899999999999999996566543
No 76
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.03 E-value=8.9e-10 Score=62.53 Aligned_cols=53 Identities=21% Similarity=0.271 Sum_probs=28.7
Q ss_pred CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517 14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS 67 (78)
Q Consensus 14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~ 67 (78)
++|.+++..+..+..+++|+.|++++|.+. .+|..+..+++|++|++++|.++
T Consensus 224 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~ 276 (330)
T 1xku_A 224 SFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276 (330)
T ss_dssp CSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC
T ss_pred CCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCC
Confidence 455555444444555555555555555555 45555555555555555555555
No 77
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.03 E-value=2.8e-10 Score=65.13 Aligned_cols=71 Identities=25% Similarity=0.268 Sum_probs=57.9
Q ss_pred CCccc-chhhhcc-CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCC
Q 036517 2 IPLYR-SHLTILF-RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTS 73 (78)
Q Consensus 2 ~p~~~-~~l~~l~-~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~ 73 (78)
+|..+ ..++.|. ++|.+++..+..+..+++|+.|++++|.+.+..+..|..+++|++|++++|.++ .+|..
T Consensus 46 iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~ 118 (353)
T 2z80_A 46 IPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSS 118 (353)
T ss_dssp CCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-SCCHH
T ss_pred ccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC-cCCHh
Confidence 45544 2455566 889999766668999999999999999999777788999999999999999998 66643
No 78
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.02 E-value=8.9e-10 Score=61.18 Aligned_cols=54 Identities=15% Similarity=0.131 Sum_probs=25.7
Q ss_pred CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517 14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS 67 (78)
Q Consensus 14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~ 67 (78)
++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus 60 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 113 (276)
T 2z62_A 60 SRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113 (276)
T ss_dssp TTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred CCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCcc
Confidence 445554444444555555555555555554333344444444444444444444
No 79
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.02 E-value=4.3e-10 Score=67.70 Aligned_cols=57 Identities=18% Similarity=0.099 Sum_probs=31.5
Q ss_pred CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccC
Q 036517 14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIP 71 (78)
Q Consensus 14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p 71 (78)
++|.+++..+..+..+++|+.|++++|.+.+..|..|..+++|++|++++|.+. .+|
T Consensus 60 s~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp 116 (562)
T 3a79_B 60 SQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NIS 116 (562)
T ss_dssp CSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EEC
T ss_pred CCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccC
Confidence 555555444445555555666666555555444555555555555555555555 444
No 80
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.02 E-value=1.3e-09 Score=60.54 Aligned_cols=54 Identities=20% Similarity=0.194 Sum_probs=25.2
Q ss_pred CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517 14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS 67 (78)
Q Consensus 14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~ 67 (78)
++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 170 (270)
T 2o6q_A 117 DRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK 170 (270)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCc
Confidence 444444333333444455555555555444322233445555555555555555
No 81
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.02 E-value=5.4e-10 Score=70.10 Aligned_cols=46 Identities=22% Similarity=0.192 Sum_probs=22.9
Q ss_pred CccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCccee
Q 036517 23 PPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSG 68 (78)
Q Consensus 23 p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~ 68 (78)
|..|..+++|+.|++++|.+.+..|..|+.+++|++|++++|.+.+
T Consensus 66 ~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~ 111 (844)
T 3j0a_A 66 KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSD 111 (844)
T ss_dssp TTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSS
T ss_pred HHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCc
Confidence 3344445555555555555544444455555555555555555543
No 82
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.01 E-value=1.8e-10 Score=68.59 Aligned_cols=54 Identities=17% Similarity=0.117 Sum_probs=23.6
Q ss_pred CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517 14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS 67 (78)
Q Consensus 14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~ 67 (78)
++|.+++..|..+..+++|+.|++++|.+.+..|..|..+++|++|++++|.+.
T Consensus 29 s~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 82 (520)
T 2z7x_B 29 SQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV 82 (520)
T ss_dssp CSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC
T ss_pred CCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee
Confidence 444444333334444444444444444444333444444444444444444444
No 83
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.01 E-value=9e-10 Score=65.06 Aligned_cols=74 Identities=19% Similarity=0.043 Sum_probs=49.9
Q ss_pred Ccccchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCcC
Q 036517 3 PLYRSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGN 76 (78)
Q Consensus 3 p~~~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~ 76 (78)
|..+..++.|+ ++|.+++..+..+..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+.+..|..+..
T Consensus 73 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 150 (477)
T 2id5_A 73 PGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG 150 (477)
T ss_dssp TTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTT
T ss_pred hhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccC
Confidence 34455555555 677777444445677788888888888777666677777777777777777777554545544
No 84
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.00 E-value=6.7e-10 Score=69.69 Aligned_cols=75 Identities=21% Similarity=0.223 Sum_probs=52.1
Q ss_pred Ccccchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchh--hhCCCCCCEEEcccCcceeccC-CCCc
Q 036517 3 PLYRSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPES--LGRFGCLIKLNLARNKLSGSIP-TSFG 75 (78)
Q Consensus 3 p~~~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~--~~~l~~L~~L~l~~n~l~~~~p-~~~~ 75 (78)
|..+.+++.|+ ++|.+.+..|..+..+++|+.|++++|.+.+..|.. ++.+++|++|++++|.+.+..+ ..++
T Consensus 66 ~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~ 145 (844)
T 3j0a_A 66 KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFG 145 (844)
T ss_dssp TTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGG
T ss_pred HHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHh
Confidence 34455566565 778888777778888888888888888887655554 7777888888888887774433 2344
Q ss_pred CC
Q 036517 76 NL 77 (78)
Q Consensus 76 ~l 77 (78)
++
T Consensus 146 ~L 147 (844)
T 3j0a_A 146 KL 147 (844)
T ss_dssp TC
T ss_pred hC
Confidence 43
No 85
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.00 E-value=1.3e-09 Score=64.10 Aligned_cols=67 Identities=22% Similarity=0.151 Sum_probs=51.3
Q ss_pred ccchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCC
Q 036517 5 YRSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPT 72 (78)
Q Consensus 5 ~~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~ 72 (78)
.+..++.|+ ++|.+++..+..|..+++|+.|++++|.+....+..|..+++|++|++++|.+. .+|.
T Consensus 83 ~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~ 153 (440)
T 3zyj_A 83 SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPS 153 (440)
T ss_dssp TTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCC-EECT
T ss_pred HhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCccc-ccCH
Confidence 444555555 788888777778888999999999999888555557888889999999988888 4443
No 86
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.00 E-value=1.5e-09 Score=61.64 Aligned_cols=53 Identities=19% Similarity=0.172 Sum_probs=36.7
Q ss_pred CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517 14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS 67 (78)
Q Consensus 14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~ 67 (78)
++|.+++..+..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.++
T Consensus 225 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~ 277 (332)
T 2ft3_A 225 GHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT 277 (332)
T ss_dssp CSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCC
T ss_pred CCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCC
Confidence 666666555556666777777777777776 66666777777777777777776
No 87
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.99 E-value=5.7e-10 Score=67.18 Aligned_cols=71 Identities=21% Similarity=0.163 Sum_probs=52.5
Q ss_pred cccchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCccee-ccCCCCcCC
Q 036517 4 LYRSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSG-SIPTSFGNL 77 (78)
Q Consensus 4 ~~~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~l 77 (78)
..+..++.|+ ++|.+++..|..|..+++|++|++++|.+. .+|.. .+++|++|++++|.+.+ .+|..++++
T Consensus 70 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l 145 (562)
T 3a79_B 70 PDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNL 145 (562)
T ss_dssp GGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGC
T ss_pred hhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhccc
Confidence 3556666665 888888877888888888999999888888 66655 67888888888888873 234555544
No 88
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.99 E-value=8.3e-10 Score=58.83 Aligned_cols=66 Identities=20% Similarity=0.074 Sum_probs=54.3
Q ss_pred Ccccchhhhcc----CCceeeecCCccccCCCCCceEecccCc-CCCCCchhhhCCCCCCEEEcccCcceeccC
Q 036517 3 PLYRSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNK-RTDSIPESLGRFGCLIKLNLARNKLSGSIP 71 (78)
Q Consensus 3 p~~~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~-~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p 71 (78)
|..+..++.|+ ++|.+++..+..+..+++|+.|++++|. +. .+| .+..+++|+.|++++|.+. .++
T Consensus 105 ~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~-~~~ 175 (197)
T 4ezg_A 105 IPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVH-DYR 175 (197)
T ss_dssp SCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCC-CCT
T ss_pred ChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCc-ChH
Confidence 45566666666 8899998778889999999999999998 65 666 6889999999999999988 554
No 89
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.99 E-value=1.2e-09 Score=63.15 Aligned_cols=72 Identities=19% Similarity=0.146 Sum_probs=56.4
Q ss_pred ccchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCch-hhhCCCCCCEEEcccCcceeccCCCCcCC
Q 036517 5 YRSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPE-SLGRFGCLIKLNLARNKLSGSIPTSFGNL 77 (78)
Q Consensus 5 ~~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l 77 (78)
.+..++.|+ ++|.+++..|..+..+++|+.|++++|.+. .+|. .|..+++|++|++++|.+.+..|..++.+
T Consensus 88 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 164 (390)
T 3o6n_A 88 AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT 164 (390)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSC
T ss_pred hccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCC
Confidence 455555555 888898777777899999999999999998 5554 46889999999999999985555556554
No 90
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.99 E-value=3.7e-10 Score=67.25 Aligned_cols=70 Identities=23% Similarity=0.143 Sum_probs=58.4
Q ss_pred ccchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCccee-ccCCCCcCC
Q 036517 5 YRSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSG-SIPTSFGNL 77 (78)
Q Consensus 5 ~~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~l 77 (78)
.+..++.|+ ++|.+++..|..+..+++|++|++++|.+. .+|.. .+++|++|++++|.+.+ .+|..++++
T Consensus 40 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l 114 (520)
T 2z7x_B 40 DILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNM 114 (520)
T ss_dssp HHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGC
T ss_pred hccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccC
Confidence 455555565 899999888889999999999999999999 67766 88999999999999985 467777665
No 91
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.98 E-value=9.9e-10 Score=67.19 Aligned_cols=63 Identities=16% Similarity=0.119 Sum_probs=35.5
Q ss_pred CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCcC
Q 036517 14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGN 76 (78)
Q Consensus 14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~ 76 (78)
++|.+++..|..+..+++|+.|++++|.+.+..+..|+.+++|++|++++|.+.+..|..+++
T Consensus 57 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 119 (680)
T 1ziw_A 57 GFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVK 119 (680)
T ss_dssp CSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTT
T ss_pred CCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccc
Confidence 555566555555666666666666666666322234666666666666666665332334443
No 92
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.97 E-value=1.5e-09 Score=66.00 Aligned_cols=70 Identities=24% Similarity=0.265 Sum_probs=57.0
Q ss_pred chhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCC-CcCC
Q 036517 7 SHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTS-FGNL 77 (78)
Q Consensus 7 ~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~-~~~l 77 (78)
..++.|+ ++|.+++..+..+..+++|+.|++++|.+.+..|..|+.+++|++|++++|.+. .+|.. ++.+
T Consensus 72 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l 146 (597)
T 3oja_B 72 DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNT 146 (597)
T ss_dssp HHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTC
T ss_pred ccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC-CCCHHHhccC
Confidence 3444444 888999877778999999999999999999777778899999999999999999 66654 3443
No 93
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.96 E-value=5.3e-10 Score=58.67 Aligned_cols=52 Identities=17% Similarity=0.058 Sum_probs=24.7
Q ss_pred CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517 14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS 67 (78)
Q Consensus 14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~ 67 (78)
++|.+++. +.+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus 50 s~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~ 101 (176)
T 1a9n_A 50 SDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101 (176)
T ss_dssp CSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC
T ss_pred CCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC
Confidence 44555432 34445555555555555555222223345555555555555544
No 94
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.96 E-value=1.4e-09 Score=62.12 Aligned_cols=64 Identities=20% Similarity=0.034 Sum_probs=52.8
Q ss_pred cccchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCccee
Q 036517 4 LYRSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSG 68 (78)
Q Consensus 4 ~~~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~ 68 (78)
..|..++.|+ ++|.+++..|..|..+++|+.|+|++|.+.+..+..+..+. |+.|++.+|.+..
T Consensus 50 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 50 RDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp GGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred hHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 3566666666 89999998888899999999999999999955555566666 9999999999873
No 95
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.94 E-value=9.2e-10 Score=60.06 Aligned_cols=43 Identities=19% Similarity=0.163 Sum_probs=19.8
Q ss_pred cccCCCCCceEeccc-CcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517 25 EFGDSLHLQVFYLEN-NKRTDSIPESLGRFGCLIKLNLARNKLS 67 (78)
Q Consensus 25 ~~~~~~~L~~l~l~~-n~~~~~~p~~~~~l~~L~~L~l~~n~l~ 67 (78)
.+..+++|+.|++++ |.+.+..+..|..+++|++|++++|.+.
T Consensus 75 ~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~ 118 (239)
T 2xwt_C 75 SFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK 118 (239)
T ss_dssp TEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCC
T ss_pred HcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCc
Confidence 444444555555544 4444332334444444554444444444
No 96
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.93 E-value=1.6e-09 Score=56.84 Aligned_cols=57 Identities=18% Similarity=0.105 Sum_probs=45.7
Q ss_pred CCceeeecCCccccCCCCCceEecccCcCCCCCch--hhhCCCCCCEEEcccCcceeccCC
Q 036517 14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPE--SLGRFGCLIKLNLARNKLSGSIPT 72 (78)
Q Consensus 14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~--~~~~l~~L~~L~l~~n~l~~~~p~ 72 (78)
++|.+++..+..+..+++|+.|++++|.+. .+|. .+..+++|+.|++++|.+. .+|.
T Consensus 72 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~ 130 (176)
T 1a9n_A 72 NNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKH 130 (176)
T ss_dssp CSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTT
T ss_pred CCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHh
Confidence 888888554444588899999999999986 6666 7888899999999999887 6665
No 97
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.90 E-value=1.8e-09 Score=58.88 Aligned_cols=70 Identities=11% Similarity=0.108 Sum_probs=55.3
Q ss_pred hhhhcc-CCceeeecCCccccCCCCCceEecccCc-CCCCCchhhhCCCCCCEEEccc-CcceeccCCCCcCC
Q 036517 8 HLTILF-RNLYLTGSVPPEFGDSLHLQVFYLENNK-RTDSIPESLGRFGCLIKLNLAR-NKLSGSIPTSFGNL 77 (78)
Q Consensus 8 ~l~~l~-~~n~~~~~~p~~~~~~~~L~~l~l~~n~-~~~~~p~~~~~l~~L~~L~l~~-n~l~~~~p~~~~~l 77 (78)
.++.|. ++|.+++..+..+..+++|+.|++++|. +....+..|..+++|++|++++ |.+++..+..+..+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l 104 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKEL 104 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECC
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCC
Confidence 455566 8899997766689999999999999997 8855556899999999999998 99984333445443
No 98
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.87 E-value=5.6e-10 Score=63.13 Aligned_cols=54 Identities=20% Similarity=0.213 Sum_probs=34.2
Q ss_pred CCceeeecCCccccCC-----CCCceEecccCcCCCCCchhhhCCCCCCEEEcccCccee
Q 036517 14 RNLYLTGSVPPEFGDS-----LHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSG 68 (78)
Q Consensus 14 ~~n~~~~~~p~~~~~~-----~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~ 68 (78)
++|.+++. |..+..+ ++|++|++++|.+.+..|..++.+++|++|++++|.+.+
T Consensus 129 s~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 187 (312)
T 1wwl_A 129 RNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELG 187 (312)
T ss_dssp ESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCH
T ss_pred cCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCc
Confidence 66666654 5555554 666777777776665555666666666777776666543
No 99
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.78 E-value=2.6e-09 Score=63.35 Aligned_cols=67 Identities=30% Similarity=0.377 Sum_probs=25.0
Q ss_pred chhhhcc-CCceeeecCCccccCCCCCceEecccCcCCC--CCchhhhCC-------------CCCCEEEcccCccee--
Q 036517 7 SHLTILF-RNLYLTGSVPPEFGDSLHLQVFYLENNKRTD--SIPESLGRF-------------GCLIKLNLARNKLSG-- 68 (78)
Q Consensus 7 ~~l~~l~-~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~--~~p~~~~~l-------------~~L~~L~l~~n~l~~-- 68 (78)
..++.|. ++|.++ .+|. .+++|+.|++++|.+.+ .+|..++.+ ++|+.|++++|.+++
T Consensus 337 ~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~ 412 (454)
T 1jl5_A 337 PRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFP 412 (454)
T ss_dssp TTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC--------------------------
T ss_pred CcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccc
Confidence 3344444 556665 3444 35667777777777766 556666555 567777777777765
Q ss_pred ccCCCCcCC
Q 036517 69 SIPTSFGNL 77 (78)
Q Consensus 69 ~~p~~~~~l 77 (78)
.+|.++..+
T Consensus 413 ~iP~sl~~L 421 (454)
T 1jl5_A 413 DIPESVEDL 421 (454)
T ss_dssp ---------
T ss_pred cchhhHhhe
Confidence 566655443
No 100
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.76 E-value=1.5e-08 Score=60.46 Aligned_cols=46 Identities=20% Similarity=0.151 Sum_probs=28.6
Q ss_pred CCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCcC
Q 036517 29 SLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGN 76 (78)
Q Consensus 29 ~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~ 76 (78)
+++|+.|++++|.+.+ +|..+..+++|+.|++++|.+. .+|..++.
T Consensus 190 l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~ 235 (487)
T 3oja_A 190 FAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRF 235 (487)
T ss_dssp CTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCC
T ss_pred CCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc-ccchhhcc
Confidence 5556666666666663 3444666777777777777777 46655543
No 101
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.75 E-value=5.7e-09 Score=62.32 Aligned_cols=52 Identities=25% Similarity=0.153 Sum_probs=26.4
Q ss_pred CCceeeecCCcccc-CCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517 14 RNLYLTGSVPPEFG-DSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS 67 (78)
Q Consensus 14 ~~n~~~~~~p~~~~-~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~ 67 (78)
++|.+++..|..+. .+++|+.|++++|.+.+. +. ...+++|+.|++++|.+.
T Consensus 152 s~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~ 204 (487)
T 3oja_A 152 KLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLA 204 (487)
T ss_dssp TTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCC
T ss_pred CCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEECCCCCCC
Confidence 45555544444443 455555555555555532 21 223556666666666666
No 102
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.73 E-value=1.8e-08 Score=57.11 Aligned_cols=59 Identities=15% Similarity=0.083 Sum_probs=36.4
Q ss_pred CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCcC
Q 036517 14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGN 76 (78)
Q Consensus 14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~ 76 (78)
++|.+++. + ....+++|+.|++++|.+. .+|..+..+++|+.|++++|.+. .+|..+..
T Consensus 177 ~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~ 235 (317)
T 3o53_A 177 QYNFIYDV-K-GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRF 235 (317)
T ss_dssp TTSCCCEE-E-CCCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCC-EECTTCCC
T ss_pred CCCcCccc-c-cccccccCCEEECCCCcCC-cchhhhcccCcccEEECcCCccc-chhhHhhc
Confidence 55555533 2 2223666667777777666 34455777777777777777777 56665544
No 103
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.71 E-value=1.9e-08 Score=56.75 Aligned_cols=40 Identities=20% Similarity=0.154 Sum_probs=23.7
Q ss_pred CCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517 28 DSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS 67 (78)
Q Consensus 28 ~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~ 67 (78)
.+++|+.|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 182 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGL 182 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTC
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCc
Confidence 4555666666666665444455666666666666666554
No 104
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.70 E-value=3.9e-10 Score=60.16 Aligned_cols=51 Identities=14% Similarity=0.137 Sum_probs=23.6
Q ss_pred CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517 14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS 67 (78)
Q Consensus 14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~ 67 (78)
++|.+++ +| .+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+.
T Consensus 56 s~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~ 106 (198)
T 1ds9_A 56 STNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA 106 (198)
T ss_dssp SEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECC
T ss_pred CCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCC
Confidence 4444443 33 4444455555555555444 34444444444444444444444
No 105
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.69 E-value=2.3e-08 Score=56.46 Aligned_cols=51 Identities=24% Similarity=0.275 Sum_probs=28.1
Q ss_pred CCceeeecCCccccCC---CCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517 14 RNLYLTGSVPPEFGDS---LHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS 67 (78)
Q Consensus 14 ~~n~~~~~~p~~~~~~---~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~ 67 (78)
++|.+++..|+.+..+ ++|+.|++++|.++ .+|..+. ++|+.|++++|.+.
T Consensus 232 s~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~ 285 (310)
T 4glp_A 232 SHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLN 285 (310)
T ss_dssp TTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCC
T ss_pred CCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCC
Confidence 5555555445444444 45666666666655 4454432 45666666666655
No 106
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.67 E-value=3.6e-09 Score=59.91 Aligned_cols=66 Identities=26% Similarity=0.262 Sum_probs=53.2
Q ss_pred hhhhcc-CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce-eccCCCCc
Q 036517 8 HLTILF-RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS-GSIPTSFG 75 (78)
Q Consensus 8 ~l~~l~-~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~-~~~p~~~~ 75 (78)
+++.|. ++|.+++ +|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+. +.+|..++
T Consensus 192 ~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~ 259 (317)
T 3o53_A 192 KLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259 (317)
T ss_dssp TCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHH
T ss_pred cCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHh
Confidence 344444 8899985 5666999999999999999999 67888999999999999999987 44444433
No 107
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.67 E-value=3.7e-08 Score=56.06 Aligned_cols=56 Identities=20% Similarity=0.293 Sum_probs=40.8
Q ss_pred CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccC
Q 036517 14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIP 71 (78)
Q Consensus 14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p 71 (78)
++|.+++. +.+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..|
T Consensus 273 ~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 273 GSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp CSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred cCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence 66766642 356777788888888888776667778888888888888888774433
No 108
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.66 E-value=3.5e-08 Score=56.57 Aligned_cols=66 Identities=17% Similarity=0.023 Sum_probs=38.9
Q ss_pred CCccc-chhhhcc-CCceeeecCCccccCCCCCceEecccCcCCCCCc-hhhhCCCCCCE-EEcccCcce
Q 036517 2 IPLYR-SHLTILF-RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIP-ESLGRFGCLIK-LNLARNKLS 67 (78)
Q Consensus 2 ~p~~~-~~l~~l~-~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p-~~~~~l~~L~~-L~l~~n~l~ 67 (78)
||..+ .+++.|. ++|.++...+.+|..+++|+.|++++|.+.+.+| ..|.+++++.. +.+..|++.
T Consensus 24 iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~ 93 (350)
T 4ay9_X 24 IPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL 93 (350)
T ss_dssp CCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCC
T ss_pred cCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccc
Confidence 55544 3455555 7777775444567778888888888877654443 23455555443 344445555
No 109
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.65 E-value=8.4e-08 Score=53.90 Aligned_cols=40 Identities=28% Similarity=0.363 Sum_probs=18.2
Q ss_pred ccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517 26 FGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS 67 (78)
Q Consensus 26 ~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~ 67 (78)
+..+++|+.|++++|.+.+. +. +..+++|+.|++++|.++
T Consensus 152 l~~l~~L~~L~L~~N~l~~~-~~-l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 152 LSRLTKLDTLSLEDNQISDI-VP-LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp GGGCTTCSEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC
T ss_pred hccCCCCCEEEccCCccccc-hh-hcCCCccCEEECCCCcCC
Confidence 44444444444444444422 22 444444555555555444
No 110
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.62 E-value=1e-08 Score=63.04 Aligned_cols=54 Identities=30% Similarity=0.248 Sum_probs=34.9
Q ss_pred CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCC
Q 036517 14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPT 72 (78)
Q Consensus 14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~ 72 (78)
++|.++ .+|. .+++|+.|++++|.+. .+|..+..+++|+.|++++|.+.+..|.
T Consensus 249 s~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 249 SGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp CSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred CCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 555555 3443 4566777777777776 6676777777777777777777655443
No 111
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.59 E-value=1.8e-07 Score=52.89 Aligned_cols=50 Identities=12% Similarity=0.331 Sum_probs=23.3
Q ss_pred CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517 14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS 67 (78)
Q Consensus 14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~ 67 (78)
++|.+++ ++. +..+++|+.|++++|.+.+ ++ .+..+++|++|++++|.+.
T Consensus 71 ~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~ 120 (308)
T 1h6u_A 71 KDNQITD-LAP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQIT 120 (308)
T ss_dssp CSSCCCC-CGG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCC
T ss_pred cCCcCCC-Chh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCC
Confidence 4444442 222 4455555555555555442 22 3444445555555555444
No 112
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.58 E-value=1.7e-07 Score=52.70 Aligned_cols=50 Identities=30% Similarity=0.355 Sum_probs=27.6
Q ss_pred CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517 14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS 67 (78)
Q Consensus 14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~ 67 (78)
++|.+++ + +.+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.
T Consensus 120 ~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~ 169 (291)
T 1h6t_A 120 EHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS 169 (291)
T ss_dssp TTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred CCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccc
Confidence 4455543 2 3355555566666666655532 34556666666666666665
No 113
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.58 E-value=4.9e-08 Score=54.73 Aligned_cols=62 Identities=21% Similarity=0.212 Sum_probs=45.4
Q ss_pred hhhhcc-CCceeee--cCCccccCCCCCceEecccCcCCCCCchhhhCCC--CCCEEEcccCcceeccC
Q 036517 8 HLTILF-RNLYLTG--SVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFG--CLIKLNLARNKLSGSIP 71 (78)
Q Consensus 8 ~l~~l~-~~n~~~~--~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~--~L~~L~l~~n~l~~~~p 71 (78)
.+..|. ++|.+++ .++..+..+++|+.|++++|.+.+. ..+..+. +|+.|++++|.+.+.+|
T Consensus 171 ~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 171 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp TCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred CCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 344444 8888887 4556677889999999999998854 2334444 89999999999886555
No 114
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.57 E-value=4.4e-08 Score=55.75 Aligned_cols=60 Identities=22% Similarity=0.248 Sum_probs=48.2
Q ss_pred cchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517 6 RSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS 67 (78)
Q Consensus 6 ~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~ 67 (78)
+..++.|+ ++|.+++..+..+..+++|+.|++++|.+.+..| +..+++|+.|++++|.++
T Consensus 283 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 283 LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp GGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred hcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 34445554 8899998888889999999999999999995544 888999999999999876
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.56 E-value=2.1e-07 Score=51.69 Aligned_cols=53 Identities=23% Similarity=0.302 Sum_probs=35.2
Q ss_pred CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccC
Q 036517 14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIP 71 (78)
Q Consensus 14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p 71 (78)
++|.++ .++ .+..+++|+.|++++|.+.+ ++. +..+++|++|++++|.+. .+|
T Consensus 49 ~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~~N~l~-~l~ 101 (263)
T 1xeu_A 49 DNSNIQ-SLA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSVNRNRLK-NLN 101 (263)
T ss_dssp TTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECCSSCCS-CCT
T ss_pred cCCCcc-cch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEECCCCccC-CcC
Confidence 566666 344 56677777777777777773 444 677777777777777776 444
No 116
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.54 E-value=2.5e-07 Score=56.83 Aligned_cols=40 Identities=30% Similarity=0.471 Sum_probs=17.8
Q ss_pred ccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517 26 FGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS 67 (78)
Q Consensus 26 ~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~ 67 (78)
+..+++|+.|++++|.+.+..| +..+++|+.|++++|.+.
T Consensus 149 l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 149 LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp GGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred hcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCC
Confidence 4444444444444444442222 444444444444444444
No 117
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.53 E-value=8e-08 Score=58.67 Aligned_cols=35 Identities=29% Similarity=0.326 Sum_probs=13.7
Q ss_pred ceEecccCcCCCCCchhhhCCCCCCEEEcccCccee
Q 036517 33 QVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSG 68 (78)
Q Consensus 33 ~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~ 68 (78)
+.|++++|.++ .+|..+..+++|+.|++++|.+.+
T Consensus 210 ~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 210 IFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp EEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCH
T ss_pred eEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCC
Confidence 33333333333 333333334444444444444433
No 118
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.52 E-value=8.1e-09 Score=55.02 Aligned_cols=58 Identities=26% Similarity=0.315 Sum_probs=50.5
Q ss_pred CCceeeecCCc------cccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCC
Q 036517 14 RNLYLTGSVPP------EFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSF 74 (78)
Q Consensus 14 ~~n~~~~~~p~------~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~ 74 (78)
..+.+++..|. .+..+++|+.|++++|.+.+ +| .+..+++|++|++++|.+. .+|..+
T Consensus 26 ~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~ 89 (198)
T 1ds9_A 26 EKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLD 89 (198)
T ss_dssp SEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHH
T ss_pred heeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchh
Confidence 67778877776 88999999999999999994 77 8899999999999999998 777644
No 119
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.51 E-value=2.3e-08 Score=59.27 Aligned_cols=30 Identities=13% Similarity=0.169 Sum_probs=11.6
Q ss_pred CCcccchhhhcc----CCceeeecCCccccCCCC
Q 036517 2 IPLYRSHLTILF----RNLYLTGSVPPEFGDSLH 31 (78)
Q Consensus 2 ~p~~~~~l~~l~----~~n~~~~~~p~~~~~~~~ 31 (78)
+|+++++++.|+ ++|.+++.+|..++.+.+
T Consensus 26 iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~ 59 (454)
T 1jl5_A 26 MPVEAENVKSKTEYYNAWSEWERNAPPGNGEQRE 59 (454)
T ss_dssp --------CCHHHHHHHHHHHHHTSCTTSCCCHH
T ss_pred CChhHhcccchhhhhccCCcccccCCcccccchh
Confidence 455555554444 555555555555555443
No 120
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.50 E-value=3.2e-07 Score=56.36 Aligned_cols=51 Identities=29% Similarity=0.349 Sum_probs=28.2
Q ss_pred CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCccee
Q 036517 14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSG 68 (78)
Q Consensus 14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~ 68 (78)
++|.+.+ + +.+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+
T Consensus 117 s~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~ 167 (605)
T 1m9s_A 117 EHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD 167 (605)
T ss_dssp TTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCC
T ss_pred cCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCC
Confidence 4455543 2 2355555566666666655532 445566666666666666663
No 121
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.50 E-value=2.7e-07 Score=51.25 Aligned_cols=51 Identities=22% Similarity=0.306 Sum_probs=29.3
Q ss_pred CCceeeecCCccccCCCCCceEecccCcCCCCCc--------------------hhhhCCCCCCEEEcccCcce
Q 036517 14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIP--------------------ESLGRFGCLIKLNLARNKLS 67 (78)
Q Consensus 14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p--------------------~~~~~l~~L~~L~l~~n~l~ 67 (78)
++|.+++. +. +..+++|+.|++++|.+.+ +| +.+..+++|+.|++++|.++
T Consensus 71 ~~N~i~~~-~~-l~~l~~L~~L~L~~N~l~~-l~~~~~~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~ 141 (263)
T 1xeu_A 71 SHNQISDL-SP-LKDLTKLEELSVNRNRLKN-LNGIPSACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLK 141 (263)
T ss_dssp CSSCCCCC-GG-GTTCSSCCEEECCSSCCSC-CTTCCCSSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCC
T ss_pred CCCccCCC-hh-hccCCCCCEEECCCCccCC-cCccccCcccEEEccCCccCCChhhcCcccccEEECCCCcCC
Confidence 55666532 32 5566666666666665552 22 23556666777777777666
No 122
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.49 E-value=2.4e-07 Score=57.04 Aligned_cols=60 Identities=30% Similarity=0.385 Sum_probs=40.1
Q ss_pred hhhcc-CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCcCC
Q 036517 9 LTILF-RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNL 77 (78)
Q Consensus 9 l~~l~-~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l 77 (78)
+..|. ++|.+++ +| ..+++|+.|++++|.+. .+|. .+++|+.|++++|.++ .+|..++++
T Consensus 223 L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l 283 (622)
T 3g06_A 223 LKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHL 283 (622)
T ss_dssp CCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGS
T ss_pred CCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhc
Confidence 34444 6666663 44 34567777777777777 5555 5677888888888888 777766654
No 123
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.49 E-value=3.6e-07 Score=51.68 Aligned_cols=18 Identities=22% Similarity=0.303 Sum_probs=7.1
Q ss_pred hhCCCCCCEEEcccCcce
Q 036517 50 LGRFGCLIKLNLARNKLS 67 (78)
Q Consensus 50 ~~~l~~L~~L~l~~n~l~ 67 (78)
+..+++|+.|++++|.+.
T Consensus 147 l~~l~~L~~L~l~~n~l~ 164 (308)
T 1h6u_A 147 LAGLTNLQYLSIGNAQVS 164 (308)
T ss_dssp GGGCTTCCEEECCSSCCC
T ss_pred ccCCCCccEEEccCCcCC
Confidence 333334444444444333
No 124
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.49 E-value=3.5e-07 Score=54.15 Aligned_cols=50 Identities=28% Similarity=0.361 Sum_probs=26.9
Q ss_pred CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517 14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS 67 (78)
Q Consensus 14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~ 67 (78)
++|.+++. +. +..+++|++|++++|.+.+ .+. +..+++|++|++++|.+.
T Consensus 76 s~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~L~~n~l~ 125 (466)
T 1o6v_A 76 SNNQLTDI-TP-LKNLTKLVDILMNNNQIAD-ITP-LANLTNLTGLTLFNNQIT 125 (466)
T ss_dssp CSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC
T ss_pred CCCccCCc-hh-hhccccCCEEECCCCcccc-Chh-hcCCCCCCEEECCCCCCC
Confidence 55555532 22 5555666666666665553 222 555556666666655555
No 125
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.46 E-value=3.5e-07 Score=54.33 Aligned_cols=49 Identities=22% Similarity=0.190 Sum_probs=22.3
Q ss_pred CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517 14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS 67 (78)
Q Consensus 14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~ 67 (78)
++|.+++ +| .+..+++|+.|++++|.+.+ +| ++.+++|++|++++|.+.
T Consensus 50 s~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~ 98 (457)
T 3bz5_A 50 HNSSITD-MT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLT 98 (457)
T ss_dssp CSSCCCC-CT-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCS
T ss_pred cCCCccc-Ch-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCc
Confidence 4444443 23 34445555555555555442 22 444444444444444444
No 126
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.46 E-value=4.6e-07 Score=53.61 Aligned_cols=38 Identities=16% Similarity=0.267 Sum_probs=14.8
Q ss_pred CCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517 28 DSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS 67 (78)
Q Consensus 28 ~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~ 67 (78)
.+++|+.|++++|.+.+..| +..+++|+.|++++|.+.
T Consensus 351 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~ 388 (466)
T 1o6v_A 351 NLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWT 388 (466)
T ss_dssp TCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEE
T ss_pred cCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCccc
Confidence 33333444444443332222 333444444444444443
No 127
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.45 E-value=3.7e-08 Score=60.14 Aligned_cols=67 Identities=25% Similarity=0.329 Sum_probs=50.0
Q ss_pred CCcccchhhhcc-CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCC-------CEEEcccCcceeccCCC
Q 036517 2 IPLYRSHLTILF-RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCL-------IKLNLARNKLSGSIPTS 73 (78)
Q Consensus 2 ~p~~~~~l~~l~-~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L-------~~L~l~~n~l~~~~p~~ 73 (78)
+|..+.++..|. ++|.+++ +|. +. ++|+.|++++|.++ .+|. +.. +| +.|++++|.++ .+|..
T Consensus 155 lp~~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~ 225 (571)
T 3cvr_A 155 LPELPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPEN 225 (571)
T ss_dssp CCCCCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGG
T ss_pred CCCcCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHH
Confidence 344334555555 8899885 777 65 89999999999999 7777 544 67 99999999999 89987
Q ss_pred CcCC
Q 036517 74 FGNL 77 (78)
Q Consensus 74 ~~~l 77 (78)
++++
T Consensus 226 l~~l 229 (571)
T 3cvr_A 226 ILSL 229 (571)
T ss_dssp GGGS
T ss_pred HhcC
Confidence 7654
No 128
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.39 E-value=1.1e-06 Score=52.22 Aligned_cols=49 Identities=18% Similarity=0.235 Sum_probs=29.3
Q ss_pred CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCccee
Q 036517 14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSG 68 (78)
Q Consensus 14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~ 68 (78)
++|.+++. .+..+++|+.|++++|.+.+ +| ++.+++|+.|++++|.+.+
T Consensus 199 ~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~ 247 (457)
T 3bz5_A 199 DTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTE 247 (457)
T ss_dssp CSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC
T ss_pred cCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCC
Confidence 44555532 25556666666666666664 44 5566666777777666664
No 129
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.36 E-value=4.5e-07 Score=52.02 Aligned_cols=57 Identities=16% Similarity=0.217 Sum_probs=45.8
Q ss_pred CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCC
Q 036517 14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTS 73 (78)
Q Consensus 14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~ 73 (78)
+++.++ .+|..+ .++++.|++++|.++...+..|.++++|++|++++|.+.+.+|..
T Consensus 17 ~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~ 73 (350)
T 4ay9_X 17 QESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEAD 73 (350)
T ss_dssp ESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTT
T ss_pred cCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChh
Confidence 567777 677766 468999999999999443457999999999999999987677753
No 130
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.33 E-value=9.8e-08 Score=54.05 Aligned_cols=51 Identities=25% Similarity=0.290 Sum_probs=27.5
Q ss_pred CCceeeec-CCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccC
Q 036517 14 RNLYLTGS-VPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARN 64 (78)
Q Consensus 14 ~~n~~~~~-~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n 64 (78)
++|.+++. ++..+..+++|+.|++++|.+.+..+..+..+++|++|++++|
T Consensus 101 ~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~ 152 (336)
T 2ast_B 101 SNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC 152 (336)
T ss_dssp TTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTC
T ss_pred cCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCC
Confidence 44444433 4444555555555555555555444555555555666666555
No 131
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.33 E-value=1.7e-07 Score=53.04 Aligned_cols=54 Identities=19% Similarity=0.177 Sum_probs=25.9
Q ss_pred CCceeeecCCccccCCCCCceEecccCcCCCC-CchhhhCCCCCCEEEcccCccee
Q 036517 14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDS-IPESLGRFGCLIKLNLARNKLSG 68 (78)
Q Consensus 14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~-~p~~~~~l~~L~~L~l~~n~l~~ 68 (78)
.+|.+.+..+. +..+++|+.|++++|.+.+. ++..+..+++|++|++++|.+.+
T Consensus 78 ~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~ 132 (336)
T 2ast_B 78 PRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSD 132 (336)
T ss_dssp TTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCH
T ss_pred CCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCH
Confidence 44444433322 33455555555555554433 44445555555555555555443
No 132
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.21 E-value=2.3e-07 Score=53.65 Aligned_cols=47 Identities=13% Similarity=0.132 Sum_probs=22.1
Q ss_pred cCCccccCCCCCceEecccCcCCCC----CchhhhC--CCCCCEEEcccCcce
Q 036517 21 SVPPEFGDSLHLQVFYLENNKRTDS----IPESLGR--FGCLIKLNLARNKLS 67 (78)
Q Consensus 21 ~~p~~~~~~~~L~~l~l~~n~~~~~----~p~~~~~--l~~L~~L~l~~n~l~ 67 (78)
.+|..+..+++|+.|++++|.+.+. ++..+.. +++|+.|++++|.+.
T Consensus 235 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~ 287 (386)
T 2ca6_A 235 ALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE 287 (386)
T ss_dssp HHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred HHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCC
Confidence 3444444555555555555554432 2333322 455555555555554
No 133
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.20 E-value=1.4e-07 Score=54.49 Aligned_cols=68 Identities=19% Similarity=0.234 Sum_probs=51.7
Q ss_pred Ccccchhhhcc----CCceeeec----CCcccc--CCCCCceEecccCcCCC----CCchhh-hCCCCCCEEEcccCcce
Q 036517 3 PLYRSHLTILF----RNLYLTGS----VPPEFG--DSLHLQVFYLENNKRTD----SIPESL-GRFGCLIKLNLARNKLS 67 (78)
Q Consensus 3 p~~~~~l~~l~----~~n~~~~~----~p~~~~--~~~~L~~l~l~~n~~~~----~~p~~~-~~l~~L~~L~l~~n~l~ 67 (78)
|..+..++.|+ ++|.+++. ++..+. .+++|+.|++++|.+.+ .+|..+ .++++|++|++++|.+.
T Consensus 237 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 237 AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp HHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred HHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 33444455555 88888765 456663 48999999999999996 377777 67899999999999988
Q ss_pred ecc
Q 036517 68 GSI 70 (78)
Q Consensus 68 ~~~ 70 (78)
+..
T Consensus 317 ~~~ 319 (386)
T 2ca6_A 317 EED 319 (386)
T ss_dssp TTS
T ss_pred cch
Confidence 543
No 134
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.13 E-value=1.5e-07 Score=54.15 Aligned_cols=43 Identities=23% Similarity=0.259 Sum_probs=20.4
Q ss_pred cccCCC-CCceEecccCcCCCCCchhhhCC-----CCCCEEEcccCcce
Q 036517 25 EFGDSL-HLQVFYLENNKRTDSIPESLGRF-----GCLIKLNLARNKLS 67 (78)
Q Consensus 25 ~~~~~~-~L~~l~l~~n~~~~~~p~~~~~l-----~~L~~L~l~~n~l~ 67 (78)
.+..++ +|+.|++++|.+.+..+..+..+ ++|++|++++|.+.
T Consensus 45 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 93 (362)
T 3goz_A 45 AFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLS 93 (362)
T ss_dssp HHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred HHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCC
Confidence 344444 45555555555554434333332 45555555555544
No 135
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.12 E-value=2.1e-06 Score=48.16 Aligned_cols=42 Identities=24% Similarity=0.245 Sum_probs=36.6
Q ss_pred cCCCCCceEecccCcCCC--CCchhhhCCCCCCEEEcccCccee
Q 036517 27 GDSLHLQVFYLENNKRTD--SIPESLGRFGCLIKLNLARNKLSG 68 (78)
Q Consensus 27 ~~~~~L~~l~l~~n~~~~--~~p~~~~~l~~L~~L~l~~n~l~~ 68 (78)
..+++|+.|++++|.+.+ .+|..+..+++|+.|+|++|.+++
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~ 210 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS 210 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC
Confidence 457899999999999996 445778899999999999999984
No 136
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.04 E-value=3.1e-07 Score=53.92 Aligned_cols=55 Identities=25% Similarity=0.269 Sum_probs=35.1
Q ss_pred CCceeeecCCccccC-----CCCCceEecccCcCCC----CCchhhhCCCCCCEEEcccCccee
Q 036517 14 RNLYLTGSVPPEFGD-----SLHLQVFYLENNKRTD----SIPESLGRFGCLIKLNLARNKLSG 68 (78)
Q Consensus 14 ~~n~~~~~~p~~~~~-----~~~L~~l~l~~n~~~~----~~p~~~~~l~~L~~L~l~~n~l~~ 68 (78)
++|.+++..+..+.. .++|+.|++++|.+.+ .+|..+..+++|++|++++|.+.+
T Consensus 349 s~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 349 SNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp CSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred cCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 566665443333322 4577777777777764 556667777777777777777653
No 137
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.03 E-value=8.7e-07 Score=51.00 Aligned_cols=58 Identities=14% Similarity=-0.030 Sum_probs=47.8
Q ss_pred CCceeeecCCccccCCCCCceEecccCcCCCCCc----hhhhCCC-CCCEEEcccCcceeccC
Q 036517 14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIP----ESLGRFG-CLIKLNLARNKLSGSIP 71 (78)
Q Consensus 14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p----~~~~~l~-~L~~L~l~~n~l~~~~p 71 (78)
+.|.+++.+|..+....+|+.|++++|.+.+..+ +.+..++ +|++|++++|.+.+..+
T Consensus 6 s~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 68 (362)
T 3goz_A 6 TLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNS 68 (362)
T ss_dssp CCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCH
T ss_pred ccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHH
Confidence 5677888877777777779999999999997666 7788888 99999999999985433
No 138
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.77 E-value=5.2e-05 Score=38.17 Aligned_cols=52 Identities=25% Similarity=0.260 Sum_probs=38.7
Q ss_pred CCceee-ecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517 14 RNLYLT-GSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS 67 (78)
Q Consensus 14 ~~n~~~-~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~ 67 (78)
+++.++ ..+|..+ ..+|+.|+|++|.++..-+..|..+++|+.|+|++|.+.
T Consensus 16 s~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 16 GRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp CSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 555554 2455443 346899999999999555566889999999999999764
No 139
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.69 E-value=8.4e-07 Score=52.08 Aligned_cols=43 Identities=23% Similarity=0.156 Sum_probs=21.0
Q ss_pred cccCCCCCceEecccCcCCCCCchhhhC-----CCCCCEEEcccCcce
Q 036517 25 EFGDSLHLQVFYLENNKRTDSIPESLGR-----FGCLIKLNLARNKLS 67 (78)
Q Consensus 25 ~~~~~~~L~~l~l~~n~~~~~~p~~~~~-----l~~L~~L~l~~n~l~ 67 (78)
.+..+++|+.|++++|.+.+..+..+.. .++|+.|++++|.+.
T Consensus 336 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~ 383 (461)
T 1z7x_W 336 VLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 383 (461)
T ss_dssp HHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred HHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCC
Confidence 3344455555555555554332222221 345666666665554
No 140
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.52 E-value=0.00023 Score=40.46 Aligned_cols=43 Identities=14% Similarity=0.026 Sum_probs=23.7
Q ss_pred ccccCCCCCc-eEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517 24 PEFGDSLHLQ-VFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS 67 (78)
Q Consensus 24 ~~~~~~~~L~-~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~ 67 (78)
.+|..+.+|+ .+++.. .+...-+..|.++.+|+.++++.|.+.
T Consensus 267 ~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~ 310 (329)
T 3sb4_A 267 RVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT 310 (329)
T ss_dssp TTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC
T ss_pred HHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC
Confidence 3455555555 555554 343233455666666666666666665
No 141
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.50 E-value=8.6e-06 Score=49.17 Aligned_cols=55 Identities=11% Similarity=-0.012 Sum_probs=38.2
Q ss_pred CCceeee-cCCccccCCCCCceEecccCcCCCC-CchhhhCCCCCCEEEcccCccee
Q 036517 14 RNLYLTG-SVPPEFGDSLHLQVFYLENNKRTDS-IPESLGRFGCLIKLNLARNKLSG 68 (78)
Q Consensus 14 ~~n~~~~-~~p~~~~~~~~L~~l~l~~n~~~~~-~p~~~~~l~~L~~L~l~~n~l~~ 68 (78)
++|.+++ .++..+..+++|+.|++++|.+.+. ++..+..+++|+.|++++|.++.
T Consensus 471 ~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 471 GYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp CSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred cCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence 6666664 2333456778888888888887533 34445678888888888888763
No 142
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.46 E-value=8.3e-06 Score=49.25 Aligned_cols=54 Identities=6% Similarity=0.054 Sum_probs=32.7
Q ss_pred CCceeeec----CCccccCCCCCceEecccCcCCC----CCchhhhCCCCCCEEEcccCcce
Q 036517 14 RNLYLTGS----VPPEFGDSLHLQVFYLENNKRTD----SIPESLGRFGCLIKLNLARNKLS 67 (78)
Q Consensus 14 ~~n~~~~~----~p~~~~~~~~L~~l~l~~n~~~~----~~p~~~~~l~~L~~L~l~~n~l~ 67 (78)
++|.+++. ++.....+++|+.|+++.|.+.+ .++..+..+++|+.|++++|.+.
T Consensus 172 ~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~ 233 (592)
T 3ogk_B 172 EESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL 233 (592)
T ss_dssp TTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG
T ss_pred ccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH
Confidence 56666544 22223456777777777777652 23344556777777777777665
No 143
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.36 E-value=0.00046 Score=39.22 Aligned_cols=60 Identities=18% Similarity=0.130 Sum_probs=43.9
Q ss_pred CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCC-EEEcccCcceeccC-CCCcC
Q 036517 14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLI-KLNLARNKLSGSIP-TSFGN 76 (78)
Q Consensus 14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~-~L~l~~n~l~~~~p-~~~~~ 76 (78)
++|.++..-..+|..+.+|+.+++..| +...-+..|.++.+|+ .+++++ .++ .++ ..|..
T Consensus 234 ~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~aF~~ 295 (329)
T 3sb4_A 234 SKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT-AIEFGAFMG 295 (329)
T ss_dssp TTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC-EECTTTTTT
T ss_pred CCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce-EEchhhhhC
Confidence 677777554556888999999999887 6645556789999999 999987 566 444 34444
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.30 E-value=2.1e-05 Score=45.80 Aligned_cols=41 Identities=24% Similarity=0.230 Sum_probs=18.3
Q ss_pred cCCCCCceEecccCcCCCC----CchhhhCCCCCCEEEcccCcce
Q 036517 27 GDSLHLQVFYLENNKRTDS----IPESLGRFGCLIKLNLARNKLS 67 (78)
Q Consensus 27 ~~~~~L~~l~l~~n~~~~~----~p~~~~~l~~L~~L~l~~n~l~ 67 (78)
...++|+.|++++|.+... ++..+...++|++|++++|.+.
T Consensus 208 ~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 208 DRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp GGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred hcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 3344455555555544421 1222333445555555555543
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.24 E-value=3.6e-05 Score=44.81 Aligned_cols=54 Identities=22% Similarity=0.174 Sum_probs=30.3
Q ss_pred CCceeee----cCCccccCCCCCceEecccCcCCCC----CchhhhCCCCCCEEEcccCcce
Q 036517 14 RNLYLTG----SVPPEFGDSLHLQVFYLENNKRTDS----IPESLGRFGCLIKLNLARNKLS 67 (78)
Q Consensus 14 ~~n~~~~----~~p~~~~~~~~L~~l~l~~n~~~~~----~p~~~~~l~~L~~L~l~~n~l~ 67 (78)
++|.++. .+...+...++|+.|++++|.+... ++..+...++|+.|++++|.+.
T Consensus 163 s~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 163 SNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp CSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred CCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence 5555543 1223334566677777777666532 2344555566777777777665
No 146
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.86 E-value=0.00084 Score=33.70 Aligned_cols=42 Identities=21% Similarity=0.090 Sum_probs=32.6
Q ss_pred CCcccc-hhhhcc-CCceeeecCCccccCCCCCceEecccCcCC
Q 036517 2 IPLYRS-HLTILF-RNLYLTGSVPPEFGDSLHLQVFYLENNKRT 43 (78)
Q Consensus 2 ~p~~~~-~l~~l~-~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~ 43 (78)
+|..+. +++.|. ++|.++...+..|..+++|+.|++.+|.+.
T Consensus 25 vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 25 LPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp SCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 555553 467777 999999655556888999999999999874
No 147
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=96.81 E-value=0.0001 Score=44.50 Aligned_cols=54 Identities=11% Similarity=0.154 Sum_probs=29.0
Q ss_pred CCceeeecCCcccc-CCCCCceEecccC-cCCCC-CchhhhCCCCCCEEEcccCcce
Q 036517 14 RNLYLTGSVPPEFG-DSLHLQVFYLENN-KRTDS-IPESLGRFGCLIKLNLARNKLS 67 (78)
Q Consensus 14 ~~n~~~~~~p~~~~-~~~~L~~l~l~~n-~~~~~-~p~~~~~l~~L~~L~l~~n~l~ 67 (78)
+++.+++..+..+. .+++|+.|++++| .+... ++..+..+++|++|++++|.+.
T Consensus 113 ~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~ 169 (594)
T 2p1m_B 113 KRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVD 169 (594)
T ss_dssp ESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEE
T ss_pred eCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccC
Confidence 45555544444443 4566666666665 33311 3333445666666666666644
No 148
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.65 E-value=0.00038 Score=36.75 Aligned_cols=39 Identities=26% Similarity=0.307 Sum_probs=18.6
Q ss_pred CCCCceEecccCcCCCC----CchhhhCCCCCCEEEc--ccCcce
Q 036517 29 SLHLQVFYLENNKRTDS----IPESLGRFGCLIKLNL--ARNKLS 67 (78)
Q Consensus 29 ~~~L~~l~l~~n~~~~~----~p~~~~~l~~L~~L~l--~~n~l~ 67 (78)
.+.|+.|++++|.+... +.+.+...+.|++|++ ++|.+.
T Consensus 92 n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 92 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCC
Confidence 34555555555555421 2233344445555555 445443
No 149
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.57 E-value=0.00034 Score=36.93 Aligned_cols=42 Identities=21% Similarity=0.278 Sum_probs=22.4
Q ss_pred ccCCCCCceEecccCcCCCC----CchhhhCCCCCCEEEcccCcce
Q 036517 26 FGDSLHLQVFYLENNKRTDS----IPESLGRFGCLIKLNLARNKLS 67 (78)
Q Consensus 26 ~~~~~~L~~l~l~~n~~~~~----~p~~~~~l~~L~~L~l~~n~l~ 67 (78)
+...+.|+.|++++|.+... +.+.+...+.|++|++++|.+.
T Consensus 61 L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 61 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 44455666666666665421 2233344456666666666554
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=96.50 E-value=0.00012 Score=42.56 Aligned_cols=14 Identities=29% Similarity=0.242 Sum_probs=6.7
Q ss_pred CCCCCEEEcccCcc
Q 036517 53 FGCLIKLNLARNKL 66 (78)
Q Consensus 53 l~~L~~L~l~~n~l 66 (78)
+++|+.|++++|.+
T Consensus 306 l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 306 IKHLKFINMKYNYL 319 (362)
T ss_dssp HTTCSEEECCSBBC
T ss_pred CCcceEEECCCCcC
Confidence 34455555544443
No 151
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=96.43 E-value=0.00031 Score=42.44 Aligned_cols=38 Identities=11% Similarity=0.107 Sum_probs=16.6
Q ss_pred CCCCceEecccCcCCCCCchhh-hCCCCCCEEEcccCcc
Q 036517 29 SLHLQVFYLENNKRTDSIPESL-GRFGCLIKLNLARNKL 66 (78)
Q Consensus 29 ~~~L~~l~l~~n~~~~~~p~~~-~~l~~L~~L~l~~n~l 66 (78)
+++|+.|++++|.+++.....+ ..+++|+.|++++|.+
T Consensus 455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF 493 (594)
T ss_dssp CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC
Confidence 4445555555544432222222 3344555555555444
No 152
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=95.92 E-value=0.012 Score=31.25 Aligned_cols=52 Identities=8% Similarity=0.056 Sum_probs=27.6
Q ss_pred CCceeeecCCccccCCCCCceEecccCc-CCCCCchhhhCC----CCCCEEEcccCc
Q 036517 14 RNLYLTGSVPPEFGDSLHLQVFYLENNK-RTDSIPESLGRF----GCLIKLNLARNK 65 (78)
Q Consensus 14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~-~~~~~p~~~~~l----~~L~~L~l~~n~ 65 (78)
+++.++..--..+..+++|+.|+++++. ++..--..+..+ ++|++|++++|.
T Consensus 69 s~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~ 125 (176)
T 3e4g_A 69 TDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCG 125 (176)
T ss_dssp ESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCT
T ss_pred cCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCC
Confidence 4444554333345667777777777663 442211223332 257777777663
No 153
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=95.51 E-value=0.045 Score=32.27 Aligned_cols=41 Identities=7% Similarity=0.069 Sum_probs=22.0
Q ss_pred cccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517 25 EFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS 67 (78)
Q Consensus 25 ~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~ 67 (78)
+|..+.+|+.+.+..+ +...-...|.++ +|+.+++.+|.+.
T Consensus 318 aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 318 LLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp TTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred hhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence 4555555665555333 332334456666 6666666666554
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=95.35 E-value=0.0035 Score=33.22 Aligned_cols=34 Identities=9% Similarity=0.057 Sum_probs=14.9
Q ss_pred CCceEecccCcCCCCCchhhhCCCCCCEEEcccC
Q 036517 31 HLQVFYLENNKRTDSIPESLGRFGCLIKLNLARN 64 (78)
Q Consensus 31 ~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n 64 (78)
.|+.||++++.++..--..+..+++|+.|+++++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC 95 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence 3445555544443222223344445555555444
No 155
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=93.77 E-value=0.021 Score=33.33 Aligned_cols=40 Identities=10% Similarity=0.113 Sum_probs=22.6
Q ss_pred CCCCceEecccCcCCCCCchhhh---CCCCCCEEEcccCccee
Q 036517 29 SLHLQVFYLENNKRTDSIPESLG---RFGCLIKLNLARNKLSG 68 (78)
Q Consensus 29 ~~~L~~l~l~~n~~~~~~p~~~~---~l~~L~~L~l~~n~l~~ 68 (78)
+++|+.|++++|.+....+..+. .+++|++|+++.|.+..
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d 293 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD 293 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence 56666666666655432222222 35667777777776653
No 156
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=93.20 E-value=0.23 Score=29.31 Aligned_cols=16 Identities=13% Similarity=-0.085 Sum_probs=7.5
Q ss_pred cccCCCCCceEecccC
Q 036517 25 EFGDSLHLQVFYLENN 40 (78)
Q Consensus 25 ~~~~~~~L~~l~l~~n 40 (78)
+|..+.+|+.+.+..|
T Consensus 266 aF~~c~~L~~l~l~~~ 281 (401)
T 4fdw_A 266 AFYYCPELAEVTTYGS 281 (401)
T ss_dssp TTTTCTTCCEEEEESS
T ss_pred HhhCCCCCCEEEeCCc
Confidence 3444445555544443
No 157
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.71 E-value=0.08 Score=28.54 Aligned_cols=42 Identities=29% Similarity=0.307 Sum_probs=21.7
Q ss_pred ccCCCCCceEecccCcCCC----CCchhhhCCCCCCEEEcccCcce
Q 036517 26 FGDSLHLQVFYLENNKRTD----SIPESLGRFGCLIKLNLARNKLS 67 (78)
Q Consensus 26 ~~~~~~L~~l~l~~n~~~~----~~p~~~~~l~~L~~L~l~~n~l~ 67 (78)
+..-+.|+.|++++|.+.. .+.+.+..-+.|+.|+|++|.+.
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 3344556666666666542 12233334455666666666554
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=92.66 E-value=0.18 Score=29.37 Aligned_cols=38 Identities=13% Similarity=0.070 Sum_probs=19.4
Q ss_pred cccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEccc
Q 036517 25 EFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLAR 63 (78)
Q Consensus 25 ~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~ 63 (78)
+|..+.+|+.+.+..+ +...-...|.++.+|+.+++..
T Consensus 338 aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 338 SFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp TTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred hccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence 4555555555555443 3322234455666666665543
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=91.97 E-value=0.57 Score=27.24 Aligned_cols=40 Identities=10% Similarity=0.175 Sum_probs=22.3
Q ss_pred cccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCc
Q 036517 25 EFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNK 65 (78)
Q Consensus 25 ~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~ 65 (78)
+|..+.+|+.+.+..+ +...-...|.++.+|+.+++.++.
T Consensus 329 aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 329 AFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred HhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 4555666666666432 432334456666667766666553
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=90.43 E-value=0.57 Score=26.97 Aligned_cols=39 Identities=13% Similarity=0.061 Sum_probs=22.0
Q ss_pred cccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEccc
Q 036517 25 EFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLAR 63 (78)
Q Consensus 25 ~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~ 63 (78)
.|..+.+|+.+.+..+.+...-...|.++.+|+.+.+..
T Consensus 281 aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~ 319 (379)
T 4h09_A 281 LCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT 319 (379)
T ss_dssp TTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT
T ss_pred ccccccccccccccccccceehhhhhcCCCCCCEEEcCc
Confidence 355556666666655555533334566666666666643
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=89.37 E-value=0.4 Score=27.60 Aligned_cols=50 Identities=14% Similarity=0.121 Sum_probs=34.5
Q ss_pred CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccC
Q 036517 14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARN 64 (78)
Q Consensus 14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n 64 (78)
..+.++..-..+|..+.+|+.+.+..+ ++..-...|.++.+|+.+.+..+
T Consensus 294 ~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 294 DNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp CCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred cccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 444555333456888999999998654 55333567889999998887543
No 162
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=88.42 E-value=1.2 Score=25.82 Aligned_cols=45 Identities=18% Similarity=0.113 Sum_probs=29.8
Q ss_pred ccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccC
Q 036517 24 PEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIP 71 (78)
Q Consensus 24 ~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p 71 (78)
.+|..+.+|+.+++..+ +...-...|.++.+|+.+.+..+ ++ .+.
T Consensus 314 ~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~ 358 (394)
T 4fs7_A 314 EAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR-KIG 358 (394)
T ss_dssp TTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EEC
T ss_pred hhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-Eeh
Confidence 45677788888877543 44233456888888888888765 44 443
No 163
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=86.17 E-value=1.6 Score=25.42 Aligned_cols=39 Identities=10% Similarity=0.238 Sum_probs=23.6
Q ss_pred cccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccC
Q 036517 25 EFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARN 64 (78)
Q Consensus 25 ~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n 64 (78)
+|..+.+|+.+.+..+ ++..-...|.++.+|+.+.+..+
T Consensus 306 aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s 344 (394)
T 4gt6_A 306 VFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS 344 (394)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT
T ss_pred eecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc
Confidence 4566677777766543 33233456777777777777543
No 164
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=76.08 E-value=4.9 Score=19.02 Aligned_cols=40 Identities=15% Similarity=0.066 Sum_probs=25.7
Q ss_pred ccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccC
Q 036517 24 PEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARN 64 (78)
Q Consensus 24 ~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n 64 (78)
.+|..+..|+.+.+-.+ ++..-...|.++.+|+.+.+...
T Consensus 14 ~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred HHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 35777778887777543 33233456777888887777543
Done!