BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036518
(223 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|359478175|ref|XP_002266278.2| PREDICTED: uncharacterized protein LOC100250974 [Vitis vinifera]
Length = 711
Score = 352 bits (903), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 168/221 (76%), Positives = 186/221 (84%), Gaps = 1/221 (0%)
Query: 2 AEALLFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYV 61
AE + L KA L RLKRYEVPK+QGP+V+P LTGEERFY KKMAQKRSNYV
Sbjct: 414 AEERIKFKLEKARIKEALLIERLKRYEVPKLQGPIVQPVNLTGEERFYMKKMAQKRSNYV 473
Query: 62 PIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDT 121
P+GRRGVFGGVILNMHMHWKKHETVKV CKP KPGQ+HE+A EIARLSGG PIQIIGDDT
Sbjct: 474 PVGRRGVFGGVILNMHMHWKKHETVKVICKPCKPGQVHEYANEIARLSGGTPIQIIGDDT 533
Query: 122 VIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKELELYYRHIALY 181
+IFYRGKNYVQPE+MSPIDTLSKK+ALEKSKYEQSLESVRRFIA+AEKELELYYRHIALY
Sbjct: 534 IIFYRGKNYVQPEVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELELYYRHIALY 593
Query: 182 GDPNNRNPMSIMDNPSKVTKESWKFKMVERKSLDSTYDALS 222
GDP++RNP SI D+PSK T ES K +M R+ D + + S
Sbjct: 594 GDPSDRNPTSIFDSPSKYTNESGK-EMPRRQDFDVSTNGFS 633
>gi|297743805|emb|CBI36688.3| unnamed protein product [Vitis vinifera]
Length = 332
Score = 349 bits (896), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 168/221 (76%), Positives = 186/221 (84%), Gaps = 1/221 (0%)
Query: 2 AEALLFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYV 61
AE + L KA L RLKRYEVPK+QGP+V+P LTGEERFY KKMAQKRSNYV
Sbjct: 35 AEERIKFKLEKARIKEALLIERLKRYEVPKLQGPIVQPVNLTGEERFYMKKMAQKRSNYV 94
Query: 62 PIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDT 121
P+GRRGVFGGVILNMHMHWKKHETVKV CKP KPGQ+HE+A EIARLSGG PIQIIGDDT
Sbjct: 95 PVGRRGVFGGVILNMHMHWKKHETVKVICKPCKPGQVHEYANEIARLSGGTPIQIIGDDT 154
Query: 122 VIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKELELYYRHIALY 181
+IFYRGKNYVQPE+MSPIDTLSKK+ALEKSKYEQSLESVRRFIA+AEKELELYYRHIALY
Sbjct: 155 IIFYRGKNYVQPEVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELELYYRHIALY 214
Query: 182 GDPNNRNPMSIMDNPSKVTKESWKFKMVERKSLDSTYDALS 222
GDP++RNP SI D+PSK T ES K +M R+ D + + S
Sbjct: 215 GDPSDRNPTSIFDSPSKYTNESGK-EMPRRQDFDVSTNGFS 254
>gi|147820521|emb|CAN67658.1| hypothetical protein VITISV_012474 [Vitis vinifera]
Length = 375
Score = 347 bits (891), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 168/221 (76%), Positives = 185/221 (83%), Gaps = 1/221 (0%)
Query: 2 AEALLFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYV 61
AE + L KA L RLKRYEVPK+QGP+V+P LTGEERFY KKMAQKRSNYV
Sbjct: 78 AEERIKFKLEKARIKEALLIERLKRYEVPKLQGPIVQPVNLTGEERFYMKKMAQKRSNYV 137
Query: 62 PIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDT 121
P+GRRGVFGGVILNMHMHWKKHETVKV CKP KPGQ+HE+A EIARLSGG PIQIIGDDT
Sbjct: 138 PVGRRGVFGGVILNMHMHWKKHETVKVICKPCKPGQVHEYANEIARLSGGTPIQIIGDDT 197
Query: 122 VIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKELELYYRHIALY 181
+IFYRGKNYVQPE MSPIDTLSKK+ALEKSKYEQSLESVRRFIA+AEKELELYYRHIALY
Sbjct: 198 IIFYRGKNYVQPEXMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELELYYRHIALY 257
Query: 182 GDPNNRNPMSIMDNPSKVTKESWKFKMVERKSLDSTYDALS 222
GDP++RNP SI D+PSK T ES K +M R+ D + + S
Sbjct: 258 GDPSDRNPTSIFDSPSKYTNESGK-EMPRRQDFDVSTNGFS 297
>gi|449437795|ref|XP_004136676.1| PREDICTED: uncharacterized protein LOC101208777 [Cucumis sativus]
gi|449494725|ref|XP_004159629.1| PREDICTED: uncharacterized LOC101208777 [Cucumis sativus]
Length = 431
Score = 343 bits (879), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 158/188 (84%), Positives = 174/188 (92%)
Query: 10 LRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVPIGRRGVF 69
L A L RL+RYEVPKVQGP+VKPH+LTGEERFY KKM QKRSNYVPIGRRGVF
Sbjct: 136 LENARIKEALLIERLRRYEVPKVQGPMVKPHDLTGEERFYIKKMGQKRSNYVPIGRRGVF 195
Query: 70 GGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTVIFYRGKN 129
GGVILNMHMHWKKHETVKV+CKP KPGQ+HE+A+EIARLSGGIPIQIIGDDT+IFYRGK+
Sbjct: 196 GGVILNMHMHWKKHETVKVYCKPCKPGQVHEYAQEIARLSGGIPIQIIGDDTIIFYRGKD 255
Query: 130 YVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKELELYYRHIALYGDPNNRNP 189
YVQPE+MSPIDTLSKK+ALEKSKYEQSLESVRRFIA+AEKELELYYRHIALYGDPN+RNP
Sbjct: 256 YVQPEVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELELYYRHIALYGDPNDRNP 315
Query: 190 MSIMDNPS 197
+SI++ PS
Sbjct: 316 LSILNVPS 323
>gi|356544514|ref|XP_003540695.1| PREDICTED: uncharacterized protein LOC100796393 [Glycine max]
Length = 426
Score = 342 bits (878), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 159/202 (78%), Positives = 178/202 (88%)
Query: 1 MAEALLFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNY 60
AE + + + KA L RLKRYEVPK QGPVVKP +LTGEERFY KKMAQKRSNY
Sbjct: 131 CAEERIKYKIEKARIKEALLIERLKRYEVPKAQGPVVKPDDLTGEERFYLKKMAQKRSNY 190
Query: 61 VPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDD 120
+ IGRRG+FGGV+LNMHMHWKKHETVKVFCKP KPGQ+HE+A+E+ARLSGGIP+QIIGDD
Sbjct: 191 LQIGRRGLFGGVVLNMHMHWKKHETVKVFCKPCKPGQVHEYAQELARLSGGIPLQIIGDD 250
Query: 121 TVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKELELYYRHIAL 180
T+IFYRGKNY QPE+MSPIDTLSKKKALEKSKYEQSLESVRRFIA+AEKELELY RH+AL
Sbjct: 251 TIIFYRGKNYEQPEVMSPIDTLSKKKALEKSKYEQSLESVRRFIAIAEKELELYCRHVAL 310
Query: 181 YGDPNNRNPMSIMDNPSKVTKE 202
YGDPNNRNP+S+MD PS +KE
Sbjct: 311 YGDPNNRNPLSMMDGPSGNSKE 332
>gi|255585329|ref|XP_002533362.1| conserved hypothetical protein [Ricinus communis]
gi|223526802|gb|EEF29024.1| conserved hypothetical protein [Ricinus communis]
Length = 412
Score = 338 bits (867), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 158/206 (76%), Positives = 181/206 (87%)
Query: 2 AEALLFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYV 61
AE + + L +A L RLKRYEVPKVQGP VKPH+LTGEERF+ KKMAQK+SNYV
Sbjct: 104 AEERIKYKLERAKIKEALLVERLKRYEVPKVQGPEVKPHDLTGEERFFMKKMAQKQSNYV 163
Query: 62 PIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDT 121
P+GRRGVFGGVILNMHMHWKKHETVKV C KPGQ+HE+A+EIARLSGGIPIQ+IGDDT
Sbjct: 164 PLGRRGVFGGVILNMHMHWKKHETVKVICNFCKPGQVHEYAQEIARLSGGIPIQVIGDDT 223
Query: 122 VIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKELELYYRHIALY 181
+IFYRGKNYVQPE+MSPIDTLSKK+ALEKSKYEQSLESVRRFIA+AEKELELYYRHIALY
Sbjct: 224 IIFYRGKNYVQPEVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELELYYRHIALY 283
Query: 182 GDPNNRNPMSIMDNPSKVTKESWKFK 207
GDPN+RN +S++D+P+ KES + +
Sbjct: 284 GDPNDRNLLSVLDSPTNDFKESGELR 309
>gi|224095670|ref|XP_002310431.1| predicted protein [Populus trichocarpa]
gi|222853334|gb|EEE90881.1| predicted protein [Populus trichocarpa]
Length = 266
Score = 317 bits (813), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 153/186 (82%), Positives = 166/186 (89%), Gaps = 1/186 (0%)
Query: 10 LRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVPIGRRGVF 69
L +A L RLKRYEVPK+QGP VKPHELTGEERF+ KKMAQK+SNYVPIGRRGVF
Sbjct: 81 LERARIKEAKLVERLKRYEVPKMQGPEVKPHELTGEERFFMKKMAQKKSNYVPIGRRGVF 140
Query: 70 GGVILNMHMHWKKHETVKVFCKPS-KPGQIHEFAEEIARLSGGIPIQIIGDDTVIFYRGK 128
GGVILNMHMHWKKHETVKV C S KPGQ+ EFA+EIARLSGGIPIQIIGDDTVIFYRGK
Sbjct: 141 GGVILNMHMHWKKHETVKVICNSSCKPGQVQEFAQEIARLSGGIPIQIIGDDTVIFYRGK 200
Query: 129 NYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKELELYYRHIALYGDPNNRN 188
NYVQP++MSP+DTLSKKKALEKSKYEQSLE+VR FIA+AEKELELY+RH ALYGD NNRN
Sbjct: 201 NYVQPKVMSPVDTLSKKKALEKSKYEQSLETVRHFIAIAEKELELYFRHNALYGDSNNRN 260
Query: 189 PMSIMD 194
P SI+D
Sbjct: 261 PGSILD 266
>gi|15226402|ref|NP_180415.1| RNA-binding CRS1 / YhbY (CRM) domain protein [Arabidopsis thaliana]
gi|4510396|gb|AAD21483.1| hypothetical protein [Arabidopsis thaliana]
gi|44917583|gb|AAS49116.1| At2g28480 [Arabidopsis thaliana]
gi|110741747|dbj|BAE98819.1| hypothetical protein [Arabidopsis thaliana]
gi|330253035|gb|AEC08129.1| RNA-binding CRS1 / YhbY (CRM) domain protein [Arabidopsis thaliana]
Length = 372
Score = 317 bits (812), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 147/194 (75%), Positives = 168/194 (86%)
Query: 2 AEALLFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYV 61
AE + + L KA L RLKRYEV KVQGP V+PHE+TGEERFY KKM QKRSNYV
Sbjct: 124 AEERIKYKLEKAKIKEALLIERLKRYEVAKVQGPEVRPHEITGEERFYLKKMGQKRSNYV 183
Query: 62 PIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDT 121
PIGRRGVFGGVILNMH+HWKKHETVKV C SKPGQ+ ++AEE+A+LSGG+P+ IIGDDT
Sbjct: 184 PIGRRGVFGGVILNMHLHWKKHETVKVICNNSKPGQVQQYAEELAKLSGGVPVNIIGDDT 243
Query: 122 VIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKELELYYRHIALY 181
+IFYRGK YVQP++MSPIDTLSKK+A EKSKYEQSLESVR FIA+AEKELELYYRH+ALY
Sbjct: 244 IIFYRGKGYVQPQVMSPIDTLSKKRAYEKSKYEQSLESVRHFIAIAEKELELYYRHVALY 303
Query: 182 GDPNNRNPMSIMDN 195
DPNNRNP+SI+D+
Sbjct: 304 DDPNNRNPLSILDD 317
>gi|297822421|ref|XP_002879093.1| hypothetical protein ARALYDRAFT_901658 [Arabidopsis lyrata subsp.
lyrata]
gi|297324932|gb|EFH55352.1| hypothetical protein ARALYDRAFT_901658 [Arabidopsis lyrata subsp.
lyrata]
Length = 345
Score = 313 bits (803), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 145/194 (74%), Positives = 167/194 (86%)
Query: 2 AEALLFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYV 61
AE + + L KA L +LKRYEV KVQGP V+PHE+TGEERFY KKM QKRSNYV
Sbjct: 121 AEERIKYKLEKAKIKEALLIEKLKRYEVAKVQGPEVRPHEITGEERFYLKKMGQKRSNYV 180
Query: 62 PIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDT 121
PIGRRGVFGGVILNMH+HWKKHETVKV C SKPGQ+ ++AEE+A+LSGG+P+ IIGDDT
Sbjct: 181 PIGRRGVFGGVILNMHLHWKKHETVKVICNNSKPGQVQQYAEELAKLSGGVPVNIIGDDT 240
Query: 122 VIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKELELYYRHIALY 181
+IFYRGK YVQP++MSPIDTLSKK+A EKSKYEQSLESVR IA+AEKELELYYRH+ALY
Sbjct: 241 IIFYRGKGYVQPQVMSPIDTLSKKRAYEKSKYEQSLESVRHSIAIAEKELELYYRHVALY 300
Query: 182 GDPNNRNPMSIMDN 195
DPNNRNP+SI+D+
Sbjct: 301 DDPNNRNPLSILDD 314
>gi|242055631|ref|XP_002456961.1| hypothetical protein SORBIDRAFT_03g046420 [Sorghum bicolor]
gi|241928936|gb|EES02081.1| hypothetical protein SORBIDRAFT_03g046420 [Sorghum bicolor]
Length = 405
Score = 301 bits (770), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 138/185 (74%), Positives = 162/185 (87%)
Query: 3 EALLFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVP 62
EA L + + KA L +LK+YEV K QGP+ KP +L+GEERFY KK++QK+SNYVP
Sbjct: 134 EARLKYKIEKAKLKEVRLVEKLKKYEVAKAQGPMAKPDDLSGEERFYLKKVSQKKSNYVP 193
Query: 63 IGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTV 122
+GRRGVFGGVILNMH+HWKKHETVKV CKP KPGQI E+A EIARLSGGIP+ IIGDDT+
Sbjct: 194 VGRRGVFGGVILNMHLHWKKHETVKVICKPCKPGQIQEYANEIARLSGGIPVNIIGDDTI 253
Query: 123 IFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKELELYYRHIALYG 182
+FYRGKNYVQPE+MSPIDTLSKKKALEKSKYEQSLE+VRRFIA++EKELELYYRH+ALYG
Sbjct: 254 VFYRGKNYVQPEVMSPIDTLSKKKALEKSKYEQSLETVRRFIAISEKELELYYRHVALYG 313
Query: 183 DPNNR 187
+P ++
Sbjct: 314 NPQSQ 318
>gi|357131757|ref|XP_003567501.1| PREDICTED: uncharacterized protein LOC100829186 [Brachypodium
distachyon]
Length = 402
Score = 300 bits (768), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 140/199 (70%), Positives = 166/199 (83%)
Query: 2 AEALLFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYV 61
AEA L + + KA L +LKRYEV K +GPV KP +L GEERFY KK++QK+SNYV
Sbjct: 135 AEARLKYKIEKAKLKEAMLIEKLKRYEVAKAEGPVAKPDDLNGEERFYLKKVSQKKSNYV 194
Query: 62 PIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDT 121
PIGRRGVFGGVILNMH+HWKKHETVKV CKP KPGQI E+A EIARLSGG+PI I+G+DT
Sbjct: 195 PIGRRGVFGGVILNMHLHWKKHETVKVICKPCKPGQIQEYASEIARLSGGVPINIVGNDT 254
Query: 122 VIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKELELYYRHIALY 181
V+FYRGK+YVQP++MSPIDTLSKKKALEKSKYEQSLE+VRRFIA++EKELELYY+H+ALY
Sbjct: 255 VVFYRGKDYVQPDVMSPIDTLSKKKALEKSKYEQSLETVRRFIAVSEKELELYYQHVALY 314
Query: 182 GDPNNRNPMSIMDNPSKVT 200
G P ++N I + K +
Sbjct: 315 GKPQSQNADLIYGDDRKAS 333
>gi|115442347|ref|NP_001045453.1| Os01g0958400 [Oryza sativa Japonica Group]
gi|57900096|dbj|BAD88158.1| group II intron splicing factor CRS1-like [Oryza sativa Japonica
Group]
gi|57900276|dbj|BAD87109.1| group II intron splicing factor CRS1-like [Oryza sativa Japonica
Group]
gi|113534984|dbj|BAF07367.1| Os01g0958400 [Oryza sativa Japonica Group]
gi|215768161|dbj|BAH00390.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218189771|gb|EEC72198.1| hypothetical protein OsI_05277 [Oryza sativa Indica Group]
gi|222619906|gb|EEE56038.1| hypothetical protein OsJ_04827 [Oryza sativa Japonica Group]
Length = 415
Score = 295 bits (754), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 135/186 (72%), Positives = 160/186 (86%)
Query: 3 EALLFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVP 62
EA L + + KA L +LK+YE+ K QGP+ K +L GEERFY KK++QK+SNYVP
Sbjct: 133 EARLKYKIEKAKLKEAMLVEKLKKYEIAKAQGPMAKQDDLDGEERFYLKKVSQKKSNYVP 192
Query: 63 IGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTV 122
+GRRGVFGGVILNMH+HWKKHETVKV CKP KPGQI E+A EIARLSGGIPI IG+DT+
Sbjct: 193 VGRRGVFGGVILNMHLHWKKHETVKVICKPCKPGQIQEYASEIARLSGGIPINTIGNDTI 252
Query: 123 IFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKELELYYRHIALYG 182
+FYRGKNYVQP++MSP+DTLSKKKALEKSKYEQSLE+VRRFIA++EKELELYYRHIALYG
Sbjct: 253 VFYRGKNYVQPDVMSPVDTLSKKKALEKSKYEQSLETVRRFIAVSEKELELYYRHIALYG 312
Query: 183 DPNNRN 188
+P ++N
Sbjct: 313 NPQSQN 318
>gi|57900098|dbj|BAD88160.1| group II intron splicing factor CRS1-like [Oryza sativa Japonica
Group]
gi|57900278|dbj|BAD87111.1| group II intron splicing factor CRS1-like [Oryza sativa Japonica
Group]
Length = 394
Score = 295 bits (754), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 135/186 (72%), Positives = 160/186 (86%)
Query: 3 EALLFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVP 62
EA L + + KA L +LK+YE+ K QGP+ K +L GEERFY KK++QK+SNYVP
Sbjct: 133 EARLKYKIEKAKLKEAMLVEKLKKYEIAKAQGPMAKQDDLDGEERFYLKKVSQKKSNYVP 192
Query: 63 IGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTV 122
+GRRGVFGGVILNMH+HWKKHETVKV CKP KPGQI E+A EIARLSGGIPI IG+DT+
Sbjct: 193 VGRRGVFGGVILNMHLHWKKHETVKVICKPCKPGQIQEYASEIARLSGGIPINTIGNDTI 252
Query: 123 IFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKELELYYRHIALYG 182
+FYRGKNYVQP++MSP+DTLSKKKALEKSKYEQSLE+VRRFIA++EKELELYYRHIALYG
Sbjct: 253 VFYRGKNYVQPDVMSPVDTLSKKKALEKSKYEQSLETVRRFIAVSEKELELYYRHIALYG 312
Query: 183 DPNNRN 188
+P ++N
Sbjct: 313 NPQSQN 318
>gi|57900097|dbj|BAD88159.1| group II intron splicing factor CRS1-like [Oryza sativa Japonica
Group]
gi|57900277|dbj|BAD87110.1| group II intron splicing factor CRS1-like [Oryza sativa Japonica
Group]
gi|215695021|dbj|BAG90212.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 417
Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 135/186 (72%), Positives = 160/186 (86%)
Query: 3 EALLFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVP 62
EA L + + KA L +LK+YE+ K QGP+ K +L GEERFY KK++QK+SNYVP
Sbjct: 133 EARLKYKIEKAKLKEAMLVEKLKKYEIAKAQGPMAKQDDLDGEERFYLKKVSQKKSNYVP 192
Query: 63 IGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTV 122
+GRRGVFGGVILNMH+HWKKHETVKV CKP KPGQI E+A EIARLSGGIPI IG+DT+
Sbjct: 193 VGRRGVFGGVILNMHLHWKKHETVKVICKPCKPGQIQEYASEIARLSGGIPINTIGNDTI 252
Query: 123 IFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKELELYYRHIALYG 182
+FYRGKNYVQP++MSP+DTLSKKKALEKSKYEQSLE+VRRFIA++EKELELYYRHIALYG
Sbjct: 253 VFYRGKNYVQPDVMSPVDTLSKKKALEKSKYEQSLETVRRFIAVSEKELELYYRHIALYG 312
Query: 183 DPNNRN 188
+P ++N
Sbjct: 313 NPQSQN 318
>gi|226509977|ref|NP_001151028.1| CFM6 [Zea mays]
gi|195643764|gb|ACG41350.1| CFM6 [Zea mays]
gi|238011754|gb|ACR36912.1| unknown [Zea mays]
Length = 394
Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 132/180 (73%), Positives = 157/180 (87%)
Query: 3 EALLFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVP 62
EA L + + KA L +LK+YE+ K QGP+ K +L+GEERFY KK++QK+SNYVP
Sbjct: 134 EARLKYKIEKAKLKEARLVEKLKKYEIAKAQGPMAKVDDLSGEERFYLKKVSQKKSNYVP 193
Query: 63 IGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTV 122
+GRRGVFGGVILNMH+HWKKHETVKV CKP KPGQI E+A EIARLSGGIP+ +IGDDT+
Sbjct: 194 VGRRGVFGGVILNMHLHWKKHETVKVICKPCKPGQIQEYANEIARLSGGIPVNVIGDDTI 253
Query: 123 IFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKELELYYRHIALYG 182
+FYRGK+YVQPE+MSP+DTLSKKKALEKSKYEQSLE+VRRFIA++EKELELYYRH+ALYG
Sbjct: 254 VFYRGKSYVQPEVMSPVDTLSKKKALEKSKYEQSLETVRRFIAISEKELELYYRHVALYG 313
>gi|357124470|ref|XP_003563923.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Brachypodium distachyon]
Length = 337
Score = 228 bits (581), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 108/192 (56%), Positives = 143/192 (74%)
Query: 3 EALLFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVP 62
E + + L KA ++L +L++YEVP+V PV P LT EE+FY K+ +K+ NYVP
Sbjct: 131 EVRIRYKLEKAKRKEEWLIEKLRKYEVPRVPEPVHDPEILTEEEKFYLKRTGEKKKNYVP 190
Query: 63 IGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTV 122
+GRRGVFGGV+LNMH+HWKKHET+KV CKP +PGQ++E+AEE+ARLS G I I ++T+
Sbjct: 191 VGRRGVFGGVVLNMHLHWKKHETMKVVCKPCRPGQVYEYAEELARLSKGTVIDIKPNNTI 250
Query: 123 IFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKELELYYRHIALYG 182
IFYRGKNYVQP++MSP DTLSK+KALEK +YEQSLE +FI EKELE Y +H+ L+
Sbjct: 251 IFYRGKNYVQPKVMSPPDTLSKQKALEKYRYEQSLEHTSQFIEQLEKELEDYQKHVILFK 310
Query: 183 DPNNRNPMSIMD 194
+ + P I +
Sbjct: 311 NRDRAIPEKISN 322
>gi|115467732|ref|NP_001057465.1| Os06g0304500 [Oryza sativa Japonica Group]
gi|113595505|dbj|BAF19379.1| Os06g0304500 [Oryza sativa Japonica Group]
gi|125596971|gb|EAZ36751.1| hypothetical protein OsJ_21087 [Oryza sativa Japonica Group]
Length = 348
Score = 226 bits (576), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 106/179 (59%), Positives = 137/179 (76%)
Query: 3 EALLFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVP 62
E + + L KA ++L +L++YEVP+ PV P LT EE+FY K+ +K+ NYVP
Sbjct: 143 EVRIRYKLEKAKRKEEWLIEKLRKYEVPRSPEPVHDPEILTEEEKFYLKRTGEKKKNYVP 202
Query: 63 IGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTV 122
+GRRGVFGGV+LNMH+HWKKHETVKV CKP +PGQ++E+AEE+ RLS G I I ++T+
Sbjct: 203 VGRRGVFGGVVLNMHLHWKKHETVKVICKPCRPGQVYEYAEELTRLSKGTVIDIKPNNTI 262
Query: 123 IFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKELELYYRHIALY 181
IFYRGKNYVQP++MSP DTLSK+KALEK +YEQSLE +FI EKELE Y +H+AL+
Sbjct: 263 IFYRGKNYVQPKVMSPPDTLSKQKALEKYRYEQSLEHTSQFIEKLEKELEDYQKHVALF 321
>gi|326525483|dbj|BAJ88788.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 340
Score = 226 bits (575), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 108/197 (54%), Positives = 142/197 (72%)
Query: 3 EALLFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVP 62
E + + L KA ++L +L++YE P+ PV P LT EE+FY K+ +K+ NYVP
Sbjct: 134 EVRIRYKLEKAKRKEEWLIEKLRKYEAPRAPEPVHDPEILTEEEKFYLKRTGEKKKNYVP 193
Query: 63 IGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTV 122
+GRRGVFGGV+LNMH+HWKKHET+KV CKP +PGQ++E+AEE+ARLS G I I ++T+
Sbjct: 194 VGRRGVFGGVVLNMHLHWKKHETMKVVCKPCRPGQVYEYAEELARLSKGTVIDIKPNNTI 253
Query: 123 IFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKELELYYRHIALYG 182
IFYRGKNYVQP++MSP DTLSK+KALEK +YEQSLE +FI E+ELE Y +H+AL+
Sbjct: 254 IFYRGKNYVQPKVMSPPDTLSKQKALEKYRYEQSLEHTSKFIEQLEQELEDYQKHVALFK 313
Query: 183 DPNNRNPMSIMDNPSKV 199
N I + S V
Sbjct: 314 KREGANSEQISNEDSAV 330
>gi|224128874|ref|XP_002328988.1| predicted protein [Populus trichocarpa]
gi|222839222|gb|EEE77573.1| predicted protein [Populus trichocarpa]
Length = 342
Score = 224 bits (570), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 114/203 (56%), Positives = 140/203 (68%), Gaps = 2/203 (0%)
Query: 3 EALLFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVP 62
E + + L KA +L +L++ EVPK G P LT EE+ Y K+ +K+ NYVP
Sbjct: 140 EVRIRYKLEKAKRKEAWLIEKLRKLEVPKTPGEAYDPEILTEEEKHYLKRTGEKKKNYVP 199
Query: 63 IGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTV 122
+GRRGVFGGV+LNMH+HWKKHETVKV CKP KPGQI E+AEE+ARLS GI I I D+T+
Sbjct: 200 VGRRGVFGGVVLNMHLHWKKHETVKVTCKPCKPGQIDEYAEELARLSKGIAIDIRPDNTI 259
Query: 123 IFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKELELYYRHIALYG 182
IFYRGKNYVQP+IMSP DTLSK KALEK +YEQSLE +FI EKELE Y H+ Y
Sbjct: 260 IFYRGKNYVQPKIMSPPDTLSKDKALEKYRYEQSLEHTSQFIEKLEKELENYQEHVVRYK 319
Query: 183 DPNNRNPMSIM--DNPSKVTKES 203
+ S + D S++T +S
Sbjct: 320 NRKEAAVDSTIADDGLSQITNQS 342
>gi|162459283|ref|NP_001105859.1| LOC732768 [Zea mays]
gi|89212802|gb|ABD63903.1| CFM6 [Zea mays]
gi|413918693|gb|AFW58625.1| hypothetical protein ZEAMMB73_217436 [Zea mays]
Length = 338
Score = 222 bits (566), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 107/205 (52%), Positives = 146/205 (71%), Gaps = 7/205 (3%)
Query: 3 EALLFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVP 62
E + + L KA ++L +L++YEVP+ PV P LT EE+FY K+ +K+ NYVP
Sbjct: 131 EVRIRYKLEKAKRKEEWLIEKLRKYEVPRTPEPVHDPEILTEEEKFYLKRTGEKKKNYVP 190
Query: 63 IGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTV 122
+GRRGVFGGV+LNMH+HWKKHETVKV CKP +PGQ++E+AEE+ RLS G I I ++T+
Sbjct: 191 VGRRGVFGGVVLNMHLHWKKHETVKVVCKPCRPGQVYEYAEELTRLSKGTVIDIKPNNTI 250
Query: 123 IFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKELELYYRHIALYG 182
+FYRGKNYVQP++MSP +TLSK+KALEK +Y QSLE +FI EKELE Y +H+AL+
Sbjct: 251 MFYRGKNYVQPKVMSPPETLSKQKALEKYRYLQSLEHTSQFIEKLEKELEDYKKHVALFK 310
Query: 183 DPNN-------RNPMSIMDNPSKVT 200
+ N N + +D+P+ +
Sbjct: 311 NHNKGVAIEKISNEDTTVDDPATTS 335
>gi|242076260|ref|XP_002448066.1| hypothetical protein SORBIDRAFT_06g020410 [Sorghum bicolor]
gi|241939249|gb|EES12394.1| hypothetical protein SORBIDRAFT_06g020410 [Sorghum bicolor]
Length = 338
Score = 220 bits (561), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 106/201 (52%), Positives = 143/201 (71%), Gaps = 6/201 (2%)
Query: 3 EALLFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVP 62
E + + L KA ++L +L++Y+VP+ PV P LT EE+FY K+ +K+ NYVP
Sbjct: 132 EVRIRYKLEKAKRKEEWLIEKLRKYDVPRTPEPVHDPEILTEEEKFYLKRTGEKKKNYVP 191
Query: 63 IGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTV 122
+GRRGVFGGV+LNMH+HWK HETVKV CKP +PGQ++E+AEE+ RLS G I I ++T+
Sbjct: 192 VGRRGVFGGVVLNMHLHWKNHETVKVVCKPCRPGQVYEYAEELTRLSKGTIIDIKPNNTI 251
Query: 123 IFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKELELYYRHIALYG 182
+FYRGKNYVQP++MSP DTLSK+KALEK +Y QSLE +FI EKELE Y +H+AL+
Sbjct: 252 MFYRGKNYVQPQVMSPPDTLSKQKALEKYRYLQSLEHTSQFIEKLEKELEDYKKHVALFK 311
Query: 183 DPNN------RNPMSIMDNPS 197
+ N S +D+P+
Sbjct: 312 NREGVASEKISNEHSTVDDPA 332
>gi|225444203|ref|XP_002270373.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic [Vitis vinifera]
gi|296089227|emb|CBI38999.3| unnamed protein product [Vitis vinifera]
Length = 269
Score = 219 bits (559), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 104/187 (55%), Positives = 135/187 (72%)
Query: 3 EALLFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVP 62
E + + L KA ++L +L+++++PK P LT EE+FY K+ +K+ NYVP
Sbjct: 83 EVRIRYKLEKAKRKEEWLIEKLRKFDIPKAPTEAYDPEILTEEEKFYLKRTGEKKKNYVP 142
Query: 63 IGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTV 122
+GRRGVFGGV+LNMH+HWKKHETVKV CKP K GQ++E+AEE+ARLS GI I I ++T+
Sbjct: 143 VGRRGVFGGVVLNMHLHWKKHETVKVICKPCKVGQVYEYAEELARLSKGIMIDIKPNNTI 202
Query: 123 IFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKELELYYRHIALYG 182
IFYRGKNYVQP++MSP DTLSK KALEK +YEQSLE +FI E ELE Y++H+A Y
Sbjct: 203 IFYRGKNYVQPQVMSPPDTLSKSKALEKYRYEQSLEHTSQFIEKLENELEEYHKHLAQYR 262
Query: 183 DPNNRNP 189
P
Sbjct: 263 KQKENQP 269
>gi|356524301|ref|XP_003530768.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Glycine max]
Length = 282
Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 107/192 (55%), Positives = 138/192 (71%), Gaps = 2/192 (1%)
Query: 3 EALLFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVP 62
E + + L KA +L +L++++VPK P LT EER Y K+ +K+ +YVP
Sbjct: 86 EVRITYKLEKAKRKETWLVEKLRKFDVPKSPPETFDPEILTEEERHYLKRTGEKKKHYVP 145
Query: 63 IGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTV 122
+GRRGVFGGV+LNMH+HWK HETVKV CKP KPGQ+HE+AEE+ARLS GI I I ++T+
Sbjct: 146 VGRRGVFGGVVLNMHLHWKNHETVKVICKPCKPGQVHEYAEELARLSKGIVIDIKPNNTI 205
Query: 123 IFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKELELYYRHIALY- 181
IFYRGKNYVQPE+MSP +TLSK KALEK +YEQSLE +FI EKELE Y++H+A +
Sbjct: 206 IFYRGKNYVQPEVMSPPNTLSKVKALEKYRYEQSLEHTSQFIERLEKELEEYHQHLAKFK 265
Query: 182 -GDPNNRNPMSI 192
G +N +S
Sbjct: 266 KGKEDNAKDVSC 277
>gi|357478871|ref|XP_003609721.1| CRM domain-containing protein, putative [Medicago truncatula]
gi|355510776|gb|AES91918.1| CRM domain-containing protein, putative [Medicago truncatula]
Length = 399
Score = 215 bits (548), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 103/179 (57%), Positives = 130/179 (72%)
Query: 3 EALLFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVP 62
E + + L KA +L +L++++VPK+ P LT EER Y K+ +K+ +YVP
Sbjct: 213 EVRIRYKLEKAKRKETWLIEKLRKFDVPKLPTETFDPEILTEEERHYLKRTGEKKKHYVP 272
Query: 63 IGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTV 122
+GRRGVFGGV+LNMH+HWK HETVKV CKP KPGQ HE+AEE+ARLS GI I I + +
Sbjct: 273 VGRRGVFGGVVLNMHLHWKNHETVKVICKPCKPGQAHEYAEELARLSKGIVIDIKPNSII 332
Query: 123 IFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKELELYYRHIALY 181
IFYRGKNYVQP++MSP DTLSK KALEK +YEQSLE +FI EKELE Y+ H+A +
Sbjct: 333 IFYRGKNYVQPKVMSPPDTLSKAKALEKYRYEQSLEHTSQFIERLEKELEEYHEHVAKF 391
>gi|449479099|ref|XP_004155504.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Cucumis sativus]
Length = 290
Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 102/179 (56%), Positives = 132/179 (73%)
Query: 3 EALLFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVP 62
E + ++L KA +L +L+++E+PK P LT EE+ Y K+ +K+ N+V
Sbjct: 97 EVRIRYSLEKAKRKEAWLIEKLRKFEIPKPFVEKYDPEILTEEEKHYLKRTGEKKKNFVL 156
Query: 63 IGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTV 122
+GRRGVFGGV+LNMHMHWKKHETVKV CKP KPGQ+HE+AEE+ RLS GI I I ++++
Sbjct: 157 LGRRGVFGGVVLNMHMHWKKHETVKVICKPCKPGQVHEYAEELTRLSKGIVIDIKPNNSI 216
Query: 123 IFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKELELYYRHIALY 181
IFYRGKNYVQPE+MSP +TLSK KALEK KYEQSLE +FI EKELE + +H+A +
Sbjct: 217 IFYRGKNYVQPEVMSPPNTLSKDKALEKYKYEQSLEHTSQFIEKLEKELEDFQKHLAQF 275
>gi|449438181|ref|XP_004136868.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Cucumis sativus]
Length = 352
Score = 210 bits (535), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 102/179 (56%), Positives = 132/179 (73%)
Query: 3 EALLFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVP 62
E + ++L KA +L +L+++E+PK P LT EE+ Y K+ +K+ N+V
Sbjct: 159 EVRIRYSLEKAKRKEAWLIEKLRKFEIPKPFVEKYDPEILTEEEKHYLKRTGEKKKNFVL 218
Query: 63 IGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTV 122
+GRRGVFGGV+LNMHMHWKKHETVKV CKP KPGQ+HE+AEE+ RLS GI I I ++++
Sbjct: 219 LGRRGVFGGVVLNMHMHWKKHETVKVICKPCKPGQVHEYAEELTRLSKGIVIDIKPNNSI 278
Query: 123 IFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKELELYYRHIALY 181
IFYRGKNYVQPE+MSP +TLSK KALEK KYEQSLE +FI EKELE + +H+A +
Sbjct: 279 IFYRGKNYVQPEVMSPPNTLSKDKALEKYKYEQSLEHTSQFIEKLEKELEDFQKHLAQF 337
>gi|255567361|ref|XP_002524660.1| conserved hypothetical protein [Ricinus communis]
gi|223536021|gb|EEF37679.1| conserved hypothetical protein [Ricinus communis]
Length = 260
Score = 206 bits (523), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 103/179 (57%), Positives = 131/179 (73%)
Query: 3 EALLFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVP 62
E + + L KA +L +L ++EVPK++ P LT EE+ Y K+ +K+ N++
Sbjct: 67 EVRIRYKLEKAKRKEAWLIEKLSKFEVPKLRAETCDPEMLTEEEKHYLKRTGEKKKNFIL 126
Query: 63 IGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTV 122
+GRRGVFGGV+LNMH+HWKKHETVK+ CKP KPGQIH++AEE+ARLS GI I I ++++
Sbjct: 127 VGRRGVFGGVVLNMHLHWKKHETVKIICKPCKPGQIHQYAEELARLSKGIVIDIRPNNSI 186
Query: 123 IFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKELELYYRHIALY 181
IFYRGKNYVQP +MSP DTLSK KALEK KYEQSLE +FI EKELE Y H+A Y
Sbjct: 187 IFYRGKNYVQPTVMSPPDTLSKNKALEKYKYEQSLEHTSQFIEKLEKELEEYLEHVARY 245
>gi|356511313|ref|XP_003524371.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Glycine max]
Length = 282
Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 102/179 (56%), Positives = 133/179 (74%)
Query: 3 EALLFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVP 62
E + + L KA +L +L++++VPK P LT EER Y K+ +++ +YVP
Sbjct: 86 EVRIRYKLEKAKRKETWLIEKLRKFDVPKPPPETYDPEILTEEERHYLKRTGERKKHYVP 145
Query: 63 IGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTV 122
+GRRGVFGGV+LNMH+HWK HETVKV CKP KPGQ+HE+AEE+ARLS GI I I ++T+
Sbjct: 146 VGRRGVFGGVVLNMHLHWKNHETVKVICKPCKPGQVHEYAEELARLSKGIVIDIKPNNTI 205
Query: 123 IFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKELELYYRHIALY 181
IFYRGKNYV+PE+MSP +TLSK KALEK +YEQSLE +FI EKELE Y++H+A +
Sbjct: 206 IFYRGKNYVKPEVMSPPNTLSKAKALEKYRYEQSLEHTSQFIEKLEKELEEYHQHLAKF 264
>gi|5123948|emb|CAB45506.1| putative protein [Arabidopsis thaliana]
gi|7268009|emb|CAB78349.1| putative protein [Arabidopsis thaliana]
Length = 332
Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 100/178 (56%), Positives = 133/178 (74%), Gaps = 1/178 (0%)
Query: 3 EALLFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVP 62
E + + L KA ++L +L++Y+VPK P LT EE+ Y K+ +KR N+V
Sbjct: 132 EVRIRYKLEKAKRKEEWLIEKLRKYDVPKSPAEPYDPESLTEEEQHYLKRTGEKRKNFVL 191
Query: 63 IGRRGVFGGVILNMHMHWKKHETVKVFCKP-SKPGQIHEFAEEIARLSGGIPIQIIGDDT 121
+GRRGVFGGV+LN+H+HWKKHETVKV CKP +KPGQ+HE+AEE+ARLS GI I + ++T
Sbjct: 192 VGRRGVFGGVVLNLHLHWKKHETVKVICKPCNKPGQVHEYAEELARLSKGIVIDVKPNNT 251
Query: 122 VIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKELELYYRHIA 179
++ YRGKNYV+PE+MSP+DTLSK KALEK +YEQSLE FI EKELE Y++++A
Sbjct: 252 IVLYRGKNYVRPEVMSPVDTLSKDKALEKYRYEQSLEHTSEFIEKLEKELEEYHKYVA 309
>gi|42566743|ref|NP_193043.2| RNA-binding CRS1 / YhbY (CRM) domain protein [Arabidopsis thaliana]
gi|51968644|dbj|BAD43014.1| putative protein [Arabidopsis thaliana]
gi|51971084|dbj|BAD44234.1| putative protein [Arabidopsis thaliana]
gi|51971893|dbj|BAD44611.1| putative protein [Arabidopsis thaliana]
gi|63003852|gb|AAY25455.1| At4g13070 [Arabidopsis thaliana]
gi|115646846|gb|ABJ17138.1| At4g13070 [Arabidopsis thaliana]
gi|332657826|gb|AEE83226.1| RNA-binding CRS1 / YhbY (CRM) domain protein [Arabidopsis thaliana]
Length = 343
Score = 201 bits (512), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 100/178 (56%), Positives = 133/178 (74%), Gaps = 1/178 (0%)
Query: 3 EALLFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVP 62
E + + L KA ++L +L++Y+VPK P LT EE+ Y K+ +KR N+V
Sbjct: 143 EVRIRYKLEKAKRKEEWLIEKLRKYDVPKSPAEPYDPESLTEEEQHYLKRTGEKRKNFVL 202
Query: 63 IGRRGVFGGVILNMHMHWKKHETVKVFCKP-SKPGQIHEFAEEIARLSGGIPIQIIGDDT 121
+GRRGVFGGV+LN+H+HWKKHETVKV CKP +KPGQ+HE+AEE+ARLS GI I + ++T
Sbjct: 203 VGRRGVFGGVVLNLHLHWKKHETVKVICKPCNKPGQVHEYAEELARLSKGIVIDVKPNNT 262
Query: 122 VIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKELELYYRHIA 179
++ YRGKNYV+PE+MSP+DTLSK KALEK +YEQSLE FI EKELE Y++++A
Sbjct: 263 IVLYRGKNYVRPEVMSPVDTLSKDKALEKYRYEQSLEHTSEFIEKLEKELEEYHKYVA 320
>gi|297790600|ref|XP_002863185.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297309019|gb|EFH39444.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 343
Score = 199 bits (506), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 99/178 (55%), Positives = 131/178 (73%), Gaps = 1/178 (0%)
Query: 3 EALLFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVP 62
E + + L KA ++L +L++Y+VPK P LT EE+ Y K+ +KR N+V
Sbjct: 143 EVRIRYKLEKAKRKEEWLIEKLRKYDVPKSSAEPYDPESLTEEEQHYLKRTGEKRKNFVL 202
Query: 63 IGRRGVFGGVILNMHMHWKKHETVKVFCKP-SKPGQIHEFAEEIARLSGGIPIQIIGDDT 121
+GRRGVFGGV+LN+H+HWKKHETVKV CKP +KPGQ+HE+AEE+ARLS GI I + ++T
Sbjct: 203 VGRRGVFGGVVLNLHLHWKKHETVKVICKPCNKPGQVHEYAEELARLSKGIVIDVKPNNT 262
Query: 122 VIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKELELYYRHIA 179
++ YRGKNYV+PE+MSP+DTLSK KALEK +YEQSLE FI EKELE Y +++
Sbjct: 263 IVLYRGKNYVRPEVMSPVDTLSKDKALEKYRYEQSLEHTSEFIEKLEKELEEYQKYVT 320
>gi|125555042|gb|EAZ00648.1| hypothetical protein OsI_22670 [Oryza sativa Indica Group]
Length = 304
Score = 193 bits (490), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 94/179 (52%), Positives = 123/179 (68%), Gaps = 20/179 (11%)
Query: 3 EALLFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVP 62
E + + L KA ++L +L++YEVP+ PV P LT EE+FY K+ +K+ NYVP
Sbjct: 119 EVRIRYKLEKAKRKEEWLIEKLRKYEVPRSPEPVHDPEILTEEEKFYLKRTGEKKKNYVP 178
Query: 63 IGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTV 122
+GRRGVFGGV+LNMH+HWKKHETVKV CKP +PGQ++E+AEE+ RLS G I I ++T+
Sbjct: 179 VGRRGVFGGVVLNMHLHWKKHETVKVICKPCRPGQVYEYAEELTRLSKGTVIDIKPNNTI 238
Query: 123 IFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKELELYYRHIALY 181
IFYRGKNYVQP++MSP DTLSK+K EKELE Y +H+AL+
Sbjct: 239 IFYRGKNYVQPKVMSPPDTLSKQK--------------------LEKELEDYQKHVALF 277
>gi|242073570|ref|XP_002446721.1| hypothetical protein SORBIDRAFT_06g021160 [Sorghum bicolor]
gi|241937904|gb|EES11049.1| hypothetical protein SORBIDRAFT_06g021160 [Sorghum bicolor]
Length = 484
Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 91/184 (49%), Positives = 120/184 (65%), Gaps = 2/184 (1%)
Query: 2 AEALLFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYV 61
AE + + L+ A + L LK+ E P P LT EE FYF KM QK NYV
Sbjct: 145 AEEKILYKLKLARKKEERLVAALKKIEPEDPSEPTHDPEVLTPEEHFYFLKMGQKCKNYV 204
Query: 62 PIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDT 121
P+GRRG++ GVILNMH+HWKKH+T++V K P ++ E A E+ARLSGGI + I +T
Sbjct: 205 PVGRRGIYQGVILNMHLHWKKHQTLQVIVKTFTPEEVKEIATELARLSGGIVLDIQDGNT 264
Query: 122 VIFYRGKNYVQ--PEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKELELYYRHIA 179
+I YRGKNY Q PEIMSP +LS+KKAL+KSKY + L ++RR+I E+ELE + +
Sbjct: 265 IIMYRGKNYAQPPPEIMSPKVSLSRKKALDKSKYMEKLRALRRYIPRLEQELEDLHAQMK 324
Query: 180 LYGD 183
L G+
Sbjct: 325 LAGE 328
>gi|238007578|gb|ACR34824.1| unknown [Zea mays]
gi|414586597|tpg|DAA37168.1| TPA: hypothetical protein ZEAMMB73_229116 [Zea mays]
Length = 342
Score = 173 bits (439), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 91/189 (48%), Positives = 122/189 (64%), Gaps = 2/189 (1%)
Query: 2 AEALLFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYV 61
AE + + L+ A + L + LK+ E P P LT EE FYF KM QK NYV
Sbjct: 3 AEEKILYKLKLARKKEERLVVALKKIEPEDPSEPTHDPEVLTPEEHFYFLKMGQKCKNYV 62
Query: 62 PIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDT 121
P+GRRG++ GVILNMH+HWKKH+T++V K P ++ E A E+A LSGGI + I +T
Sbjct: 63 PVGRRGIYQGVILNMHLHWKKHQTLQVIVKTFTPEEVKEIAIELATLSGGIVLDIQDGNT 122
Query: 122 VIFYRGKNYVQ--PEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKELELYYRHIA 179
+I YRGKNY Q PEIMSP +LS+KKAL+KSKY + L ++RR+I E+ELE + +
Sbjct: 123 IIMYRGKNYAQPPPEIMSPKVSLSRKKALDKSKYMEKLRALRRYIPRLEQELEDLHAQMK 182
Query: 180 LYGDPNNRN 188
L G+ +N
Sbjct: 183 LAGEHQGQN 191
>gi|212723506|ref|NP_001132081.1| uncharacterized protein LOC100193495 [Zea mays]
gi|194693368|gb|ACF80768.1| unknown [Zea mays]
gi|414586598|tpg|DAA37169.1| TPA: hypothetical protein ZEAMMB73_229116 [Zea mays]
gi|414586599|tpg|DAA37170.1| TPA: hypothetical protein ZEAMMB73_229116 [Zea mays]
Length = 485
Score = 173 bits (438), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 91/189 (48%), Positives = 122/189 (64%), Gaps = 2/189 (1%)
Query: 2 AEALLFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYV 61
AE + + L+ A + L + LK+ E P P LT EE FYF KM QK NYV
Sbjct: 146 AEEKILYKLKLARKKEERLVVALKKIEPEDPSEPTHDPEVLTPEEHFYFLKMGQKCKNYV 205
Query: 62 PIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDT 121
P+GRRG++ GVILNMH+HWKKH+T++V K P ++ E A E+A LSGGI + I +T
Sbjct: 206 PVGRRGIYQGVILNMHLHWKKHQTLQVIVKTFTPEEVKEIAIELATLSGGIVLDIQDGNT 265
Query: 122 VIFYRGKNYVQ--PEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKELELYYRHIA 179
+I YRGKNY Q PEIMSP +LS+KKAL+KSKY + L ++RR+I E+ELE + +
Sbjct: 266 IIMYRGKNYAQPPPEIMSPKVSLSRKKALDKSKYMEKLRALRRYIPRLEQELEDLHAQMK 325
Query: 180 LYGDPNNRN 188
L G+ +N
Sbjct: 326 LAGEHQGQN 334
>gi|357521229|ref|XP_003630903.1| CRM domain-containing protein, putative [Medicago truncatula]
gi|355524925|gb|AET05379.1| CRM domain-containing protein, putative [Medicago truncatula]
Length = 318
Score = 170 bits (431), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 79/145 (54%), Positives = 103/145 (71%)
Query: 3 EALLFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVP 62
E + + L KA +L +L++++VPK+ P LT EER Y K+ +K+ +YVP
Sbjct: 148 EVRIRYKLEKAKRKETWLIEKLRKFDVPKLPTETFDPEILTEEERHYLKRTGEKKKHYVP 207
Query: 63 IGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTV 122
+GRRGVFG V+LNMH+HWKKHETVKV CKP KPGQ HE+ EE+ R S GI I I ++ +
Sbjct: 208 VGRRGVFGEVVLNMHLHWKKHETVKVICKPCKPGQAHEYTEELTRPSKGIVIDIKPNNII 267
Query: 123 IFYRGKNYVQPEIMSPIDTLSKKKA 147
IFYRG+NYVQP++MSP DTLSK K
Sbjct: 268 IFYRGRNYVQPKVMSPPDTLSKAKV 292
>gi|356501797|ref|XP_003519710.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Glycine max]
Length = 382
Score = 170 bits (430), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 98/225 (43%), Positives = 130/225 (57%), Gaps = 4/225 (1%)
Query: 2 AEALLFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYV 61
AE + + L KA + L LK+ E + P LT EE F+F KM K NYV
Sbjct: 78 AEEKILYKLLKARKKEERLCEALKKIEPAESSETTHDPEILTPEEHFFFLKMGLKSKNYV 137
Query: 62 PIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDT 121
P+GRRG++ GVILNMH+HWKKH+T+KV K ++ E A E+ARLSGGI + I D+T
Sbjct: 138 PVGRRGIYQGVILNMHLHWKKHQTLKVVVKTFSAEEVKEIATELARLSGGIVLDIHEDNT 197
Query: 122 VIFYRGKNYVQP--EIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKELELYYRHIA 179
+I YRGKNY QP EIMSP +LS+KKAL+KSKY +L +VRR I E+ELE+
Sbjct: 198 IIMYRGKNYSQPPTEIMSPRVSLSRKKALDKSKYRDALRAVRRHIPRLEQELEILRAQFK 257
Query: 180 LYGDPNNRNPMSIMDNPSKVTKE--SWKFKMVERKSLDSTYDALS 222
+ N +I +N ++ + + LDS D LS
Sbjct: 258 SSAESNTDAAEAIQNNRERMNDNIGCTEDETDMNSELDSDSDKLS 302
>gi|115459160|ref|NP_001053180.1| Os04g0492900 [Oryza sativa Japonica Group]
gi|21740788|emb|CAD41533.1| OSJNBb0091E11.2 [Oryza sativa Japonica Group]
gi|38346227|emb|CAE02049.2| OJ990528_30.7 [Oryza sativa Japonica Group]
gi|90265163|emb|CAH67731.1| H0522A01.2 [Oryza sativa Indica Group]
gi|113564751|dbj|BAF15094.1| Os04g0492900 [Oryza sativa Japonica Group]
gi|116310744|emb|CAH67539.1| H0425E08.7 [Oryza sativa Indica Group]
gi|125548841|gb|EAY94663.1| hypothetical protein OsI_16441 [Oryza sativa Indica Group]
Length = 479
Score = 169 bits (429), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 90/189 (47%), Positives = 118/189 (62%), Gaps = 2/189 (1%)
Query: 2 AEALLFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYV 61
AE + + L+ A + L L + E P P LT EE FYF KM QK NYV
Sbjct: 139 AEEKILYKLKLARNKEERLVAALTKIEPDDPSEPTHDPEVLTPEEHFYFLKMGQKSKNYV 198
Query: 62 PIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDT 121
P+GRRG++ GVILNMH+HWKKH+T++V K P ++ E A E+ARLSGGI + I +T
Sbjct: 199 PVGRRGIYQGVILNMHLHWKKHQTLQVIVKTFTPDEVKEIASELARLSGGIVLDIQEGNT 258
Query: 122 VIFYRGKNYVQ--PEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKELELYYRHIA 179
+I YRGKNY Q PEIMSP TL +KKAL+KSKY + L ++RR+I E+EL + +
Sbjct: 259 IIMYRGKNYAQPPPEIMSPKVTLPRKKALDKSKYRERLRALRRYIPRLEQELVDLHAQMK 318
Query: 180 LYGDPNNRN 188
L D +N
Sbjct: 319 LARDYKGQN 327
>gi|357167884|ref|XP_003581379.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Brachypodium distachyon]
Length = 485
Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 89/183 (48%), Positives = 115/183 (62%), Gaps = 2/183 (1%)
Query: 2 AEALLFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYV 61
AE + + L+ A + L LK+ E P P LT EE FYF KM QK NYV
Sbjct: 146 AEEKILYKLKLARKKEERLLAALKKIEPNDPSEPTHDPEVLTPEEHFYFLKMGQKSKNYV 205
Query: 62 PIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDT 121
P+GRRG++ GVILNMH+HWKKH+T++V K P ++ E A E+A LSGGI + I +T
Sbjct: 206 PVGRRGIYQGVILNMHLHWKKHQTLQVIVKTFTPEEVKEIASELAILSGGIVLSIQEGNT 265
Query: 122 VIFYRGKNYVQ--PEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKELELYYRHIA 179
+I YRGKNY Q PEIMSP L +KKAL+KSKY L ++RR+I E+ELE + +
Sbjct: 266 IIMYRGKNYAQPPPEIMSPKIALPRKKALDKSKYRDRLRALRRYIPRLEQELEDLHAQMK 325
Query: 180 LYG 182
L G
Sbjct: 326 LSG 328
>gi|356498434|ref|XP_003518057.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like, partial [Glycine max]
Length = 383
Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 89/174 (51%), Positives = 114/174 (65%), Gaps = 2/174 (1%)
Query: 2 AEALLFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYV 61
AE + L KA + L LK+ E + P LT EE F+F KM K NYV
Sbjct: 58 AEEKNLYKLLKARKKEERLCEALKKIEPAESSETTHDPEILTPEEHFFFLKMGLKSKNYV 117
Query: 62 PIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDT 121
P+GRRG++ GVILNMH+HWKKH+T+KV K ++ E A E+ARLSGGI + I D+T
Sbjct: 118 PVGRRGIYQGVILNMHLHWKKHQTLKVVVKTFSAEEVKEIAAELARLSGGIVLDIHEDNT 177
Query: 122 VIFYRGKNYVQP--EIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKELEL 173
+I YRGKNY QP EIMSP +LS+KKAL+KSKY +L +VRR+I E+ELE+
Sbjct: 178 IIMYRGKNYSQPPTEIMSPRVSLSRKKALDKSKYRDALRAVRRYIPRLEQELEI 231
>gi|297739537|emb|CBI29719.3| unnamed protein product [Vitis vinifera]
Length = 331
Score = 166 bits (421), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 88/174 (50%), Positives = 115/174 (66%), Gaps = 2/174 (1%)
Query: 2 AEALLFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYV 61
AE + + LRKA + L+ L + E + P LT EE F+F KM K NYV
Sbjct: 3 AEEKILYKLRKARRKEERLAEALTKIEPKESSETTHDPEILTPEEHFFFLKMGLKCKNYV 62
Query: 62 PIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDT 121
PIGRRG++ GVILNMH+HWKKH+T++V K P ++ E A E+ARL+GGI + I ++T
Sbjct: 63 PIGRRGIYQGVILNMHLHWKKHQTLQVVVKTFSPEEVKEIAVELARLTGGIVLDIHEENT 122
Query: 122 VIFYRGKNYVQP--EIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKELEL 173
+I YRGKNY QP EIMSP TLS+KKAL+KSKY L +VR++I E +LEL
Sbjct: 123 IIMYRGKNYSQPPTEIMSPRITLSRKKALDKSKYRDGLRAVRKYIPRLEGDLEL 176
>gi|225448146|ref|XP_002263852.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Vitis vinifera]
Length = 401
Score = 166 bits (420), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 88/174 (50%), Positives = 115/174 (66%), Gaps = 2/174 (1%)
Query: 2 AEALLFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYV 61
AE + + LRKA + L+ L + E + P LT EE F+F KM K NYV
Sbjct: 73 AEEKILYKLRKARRKEERLAEALTKIEPKESSETTHDPEILTPEEHFFFLKMGLKCKNYV 132
Query: 62 PIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDT 121
PIGRRG++ GVILNMH+HWKKH+T++V K P ++ E A E+ARL+GGI + I ++T
Sbjct: 133 PIGRRGIYQGVILNMHLHWKKHQTLQVVVKTFSPEEVKEIAVELARLTGGIVLDIHEENT 192
Query: 122 VIFYRGKNYVQP--EIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKELEL 173
+I YRGKNY QP EIMSP TLS+KKAL+KSKY L +VR++I E +LEL
Sbjct: 193 IIMYRGKNYSQPPTEIMSPRITLSRKKALDKSKYRDGLRAVRKYIPRLEGDLEL 246
>gi|255572670|ref|XP_002527268.1| conserved hypothetical protein [Ricinus communis]
gi|223533361|gb|EEF35112.1| conserved hypothetical protein [Ricinus communis]
Length = 458
Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 88/174 (50%), Positives = 113/174 (64%), Gaps = 2/174 (1%)
Query: 2 AEALLFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYV 61
AE L + L+KA + LK+ E P LT EE F+F KM K NYV
Sbjct: 131 AEEKLLYKLKKAQKKEERYVQALKKIEPVDSSETTHDPEILTPEEHFFFLKMGLKCKNYV 190
Query: 62 PIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDT 121
P+GRRG++ GVILNMH+HWKKH+TV+V K P ++ E A E+ARL+GGI + I ++T
Sbjct: 191 PVGRRGIYQGVILNMHLHWKKHQTVQVVVKTFSPEEVKEIAAELARLTGGIVLDIHEENT 250
Query: 122 VIFYRGKNYVQP--EIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKELEL 173
+I YRGKNY QP EIMSP TLS+KKAL+KSKY L +VR +I E++LEL
Sbjct: 251 IIMYRGKNYSQPPTEIMSPRITLSRKKALDKSKYRDGLRAVRNYIPRLEQDLEL 304
>gi|449458069|ref|XP_004146770.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Cucumis sativus]
gi|449516505|ref|XP_004165287.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Cucumis sativus]
Length = 500
Score = 163 bits (413), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 128/221 (57%), Gaps = 4/221 (1%)
Query: 3 EALLFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVP 62
E +LF + KA K L L++ E P LT EE FYF KM K NYVP
Sbjct: 173 EKILF-KMNKARKKEKRLVEALEKIEPADSSDTTHDPEILTPEEHFYFLKMGIKGKNYVP 231
Query: 63 IGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTV 122
+GRRG++ GVILNMH+HWKKH+TVKV K P ++ E A E+ARL+GG+ + I +DT+
Sbjct: 232 VGRRGIYQGVILNMHLHWKKHQTVKVVVKTFSPEEVKEIAAELARLTGGLVLDIHEEDTI 291
Query: 123 IFYRGKNYVQP--EIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKELELYYRHIAL 180
I YRGKNY QP EIMSP +LS+KKAL+KSKY L +VR+ I E+EL L
Sbjct: 292 IMYRGKNYSQPPTEIMSPRVSLSRKKALDKSKYRDGLRAVRKHIPKLEQELRFLQSQAKL 351
Query: 181 YGDPNNRNPMSIMDNPSKVTKESWKFKMVERKSLDSTYDAL 221
N + + M T +S + ++LD + +A+
Sbjct: 352 NCKSNGES-VEHMQETVDDTNKSKAISSLNLENLDDSSNAM 391
>gi|357439975|ref|XP_003590265.1| CRM domain-containing protein, putative [Medicago truncatula]
gi|355479313|gb|AES60516.1| CRM domain-containing protein, putative [Medicago truncatula]
Length = 443
Score = 163 bits (413), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 86/174 (49%), Positives = 113/174 (64%), Gaps = 2/174 (1%)
Query: 2 AEALLFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYV 61
E + + L KA + L LK+ E + + P LT EE F+F KM K NYV
Sbjct: 118 TEERILYKLLKARKKEERLREALKKIEPTESSETIHDPEILTPEEHFFFLKMGLKSKNYV 177
Query: 62 PIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDT 121
P+GRRG++ GVILNMH+HWKKH+T++V K ++ E A E+ARL+GGI + I +DT
Sbjct: 178 PVGRRGIYQGVILNMHLHWKKHQTLQVVVKTFSAEEVKEIATELARLTGGIVLGIHEEDT 237
Query: 122 VIFYRGKNYVQP--EIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKELEL 173
+I YRGKNY QP EIMSP TL +KKAL+KSKY L +VRR+I E+ELE+
Sbjct: 238 IIMYRGKNYSQPPTEIMSPRVTLPRKKALDKSKYRDGLRAVRRYIPKLEQELEI 291
>gi|224132018|ref|XP_002321235.1| predicted protein [Populus trichocarpa]
gi|222862008|gb|EEE99550.1| predicted protein [Populus trichocarpa]
Length = 413
Score = 162 bits (411), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 94/221 (42%), Positives = 129/221 (58%), Gaps = 5/221 (2%)
Query: 2 AEALLFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYV 61
AE + + LRKA + LK+ E + P LT EE F+F KM K NYV
Sbjct: 90 AEEKILYKLRKAQRKEERFVQALKKIEPKESSEATHDPEILTPEEHFFFLKMGLKCKNYV 149
Query: 62 PIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDT 121
P+GRRG++ GVILNMH+HWKKH+T+KV K P ++ E A E+AR +GGI + I ++T
Sbjct: 150 PVGRRGIYQGVILNMHLHWKKHQTLKVVVKTFTPEEVKEIAAELARFTGGIVLDIHEENT 209
Query: 122 VIFYRGKNYVQP--EIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKELELYYRHIA 179
+I YRGKNY QP EIMSP TLS+KKAL+KSK L ++RR+I +++LEL +
Sbjct: 210 IIMYRGKNYSQPPTEIMSPRVTLSRKKALDKSKCRDGLRALRRYIPRLQQDLELLHARAG 269
Query: 180 LYGDPNNRNPMSIMDNPSKVTKESWKFKMVERKSLDSTYDA 220
D + SI SK + S K K + + + + D
Sbjct: 270 GKTDIDGAESRSI---SSKQLENSEKLKEIIDRQDEGSEDG 307
>gi|79417439|ref|NP_189171.2| uncharacterized CRM domain-containing protein [Arabidopsis
thaliana]
gi|75116513|sp|Q67XL4.1|Y3544_ARATH RecName: Full=Uncharacterized CRM domain-containing protein
At3g25440, chloroplastic; Flags: Precursor
gi|51971805|dbj|BAD44567.1| unknown protein [Arabidopsis thaliana]
gi|332643490|gb|AEE77011.1| uncharacterized CRM domain-containing protein [Arabidopsis
thaliana]
Length = 444
Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 86/187 (45%), Positives = 117/187 (62%), Gaps = 2/187 (1%)
Query: 2 AEALLFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYV 61
+E + + LRKA + L +K+ E + P LT EE FY+ KM K NYV
Sbjct: 137 SEEKILNKLRKARKKEERLMETMKKLEPSESAETTHDPEILTPEEHFYYLKMGLKCKNYV 196
Query: 62 PIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDT 121
P+GRRG++ GVILNMH+HWKKH+T++V K P ++ E A E+ARL+GGI + + +T
Sbjct: 197 PVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVELARLTGGIVLDVHEGNT 256
Query: 122 VIFYRGKNYVQP--EIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKELELYYRHIA 179
+I YRGKNYVQP EIMSP TL +KKAL+KSK +L +VR++I E+EL+L
Sbjct: 257 IIMYRGKNYVQPPTEIMSPRITLPRKKALDKSKCRDALRAVRKYIPRLEQELQLLQAQAE 316
Query: 180 LYGDPNN 186
D N
Sbjct: 317 TKRDYTN 323
>gi|9279724|dbj|BAB01314.1| unnamed protein product [Arabidopsis thaliana]
Length = 1115
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 84/174 (48%), Positives = 115/174 (66%), Gaps = 2/174 (1%)
Query: 2 AEALLFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYV 61
+E + + LRKA + L +K+ E + P LT EE FY+ KM K NYV
Sbjct: 808 SEEKILNKLRKARKKEERLMETMKKLEPSESAETTHDPEILTPEEHFYYLKMGLKCKNYV 867
Query: 62 PIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDT 121
P+GRRG++ GVILNMH+HWKKH+T++V K P ++ E A E+ARL+GGI + + +T
Sbjct: 868 PVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVELARLTGGIVLDVHEGNT 927
Query: 122 VIFYRGKNYVQP--EIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKELEL 173
+I YRGKNYVQP EIMSP TL +KKAL+KSK +L +VR++I E+EL+L
Sbjct: 928 IIMYRGKNYVQPPTEIMSPRITLPRKKALDKSKCRDALRAVRKYIPRLEQELQL 981
>gi|145332683|ref|NP_001078207.1| uncharacterized CRM domain-containing protein [Arabidopsis
thaliana]
gi|332643491|gb|AEE77012.1| uncharacterized CRM domain-containing protein [Arabidopsis
thaliana]
Length = 380
Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 86/187 (45%), Positives = 117/187 (62%), Gaps = 2/187 (1%)
Query: 2 AEALLFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYV 61
+E + + LRKA + L +K+ E + P LT EE FY+ KM K NYV
Sbjct: 73 SEEKILNKLRKARKKEERLMETMKKLEPSESAETTHDPEILTPEEHFYYLKMGLKCKNYV 132
Query: 62 PIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDT 121
P+GRRG++ GVILNMH+HWKKH+T++V K P ++ E A E+ARL+GGI + + +T
Sbjct: 133 PVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVELARLTGGIVLDVHEGNT 192
Query: 122 VIFYRGKNYVQP--EIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKELELYYRHIA 179
+I YRGKNYVQP EIMSP TL +KKAL+KSK +L +VR++I E+EL+L
Sbjct: 193 IIMYRGKNYVQPPTEIMSPRITLPRKKALDKSKCRDALRAVRKYIPRLEQELQLLQAQAE 252
Query: 180 LYGDPNN 186
D N
Sbjct: 253 TKRDYTN 259
>gi|297831446|ref|XP_002883605.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297329445|gb|EFH59864.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 1055
Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 84/174 (48%), Positives = 115/174 (66%), Gaps = 2/174 (1%)
Query: 2 AEALLFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYV 61
AE + + L KA + L +K+ E + P LT EE FY+ KM K NYV
Sbjct: 751 AEEKILNKLTKARKKEERLMETMKKLEPSESAETTHDPEILTPEEHFYYLKMGLKCKNYV 810
Query: 62 PIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDT 121
P+GRRG++ GVILNMH+HWKKH+T++V K P +++E A E+ARL+GGI + + +T
Sbjct: 811 PVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVNEIAVELARLTGGIVLDVHEGNT 870
Query: 122 VIFYRGKNYVQP--EIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKELEL 173
+I YRGKNYVQP EIMSP TL +KKAL+KSK +L +VR++I E+EL+L
Sbjct: 871 IIMYRGKNYVQPPTEIMSPRITLPRKKALDKSKCRDALRAVRKYIPRLEQELQL 924
>gi|125590852|gb|EAZ31202.1| hypothetical protein OsJ_15301 [Oryza sativa Japonica Group]
Length = 484
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 85/194 (43%), Positives = 113/194 (58%), Gaps = 7/194 (3%)
Query: 2 AEALLFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYV 61
AE + + L+ A + L L + E P P LT EE FYF KM QK NYV
Sbjct: 139 AEEKILYKLKLARNKEERLVAALTKIEPDDPSEPTHDPEVLTPEEHFYFLKMGQKSKNYV 198
Query: 62 PIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDT 121
P+GRRG++ GVILNMH+HWKKH+T++V K P ++ E A E+ARLSGGI + I +T
Sbjct: 199 PVGRRGIYQGVILNMHLHWKKHQTLQVIVKTFTPDEVKEIASELARLSGGIVLDIQEGNT 258
Query: 122 VIFYRGKNYVQ--PEIMSPIDTLSKK--KALE---KSKYEQSLESVRRFIAMAEKELELY 174
+I YRGKNY Q PEIMSP TL +K K L+ E + ++RR+I E+EL
Sbjct: 259 IIMYRGKNYAQPPPEIMSPKVTLPRKKWKVLQHWINQNTENASRALRRYIPRLEQELVDL 318
Query: 175 YRHIALYGDPNNRN 188
+ + L D +N
Sbjct: 319 HAQMKLARDYKGQN 332
>gi|357439925|ref|XP_003590240.1| CRM domain-containing protein, putative [Medicago truncatula]
gi|355479288|gb|AES60491.1| CRM domain-containing protein, putative [Medicago truncatula]
Length = 472
Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 86/203 (42%), Positives = 113/203 (55%), Gaps = 31/203 (15%)
Query: 2 AEALLFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYV 61
E + + L KA + L LK+ E + + P LT EE F+F KM K NYV
Sbjct: 118 TEERILYKLLKARKKEERLREALKKIEPTESSETIHDPEILTPEEHFFFLKMGLKSKNYV 177
Query: 62 PIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDT 121
P+GRRG++ GVILNMH+HWKKH+T++V K ++ E A E+ARL+GGI + I +DT
Sbjct: 178 PVGRRGIYQGVILNMHLHWKKHQTLQVVVKTFSAEEVKEIATELARLTGGIVLGIHEEDT 237
Query: 122 VIFYRGKNYVQP--EIMSPIDTLSKKK-----------------------------ALEK 150
+I YRGKNY QP EIMSP TL +KK AL+K
Sbjct: 238 IIMYRGKNYSQPPTEIMSPRVTLPRKKVLHVPKDCLHHTIKDCFTFLFAYFPSLISALDK 297
Query: 151 SKYEQSLESVRRFIAMAEKELEL 173
SKY L +VRR+I E+ELE+
Sbjct: 298 SKYRDGLRAVRRYIPKLEQELEI 320
>gi|356560779|ref|XP_003548665.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized CRM
domain-containing protein At3g25440, chloroplastic-like
[Glycine max]
Length = 273
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 94/219 (42%), Positives = 122/219 (55%), Gaps = 22/219 (10%)
Query: 9 NLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVPIGRRGV 68
+L KA K L LK+ E K P L EE F+F KM KR N VP+GRRG+
Sbjct: 24 SLTKAQKKKKRLCEALKKIEPAKSSETTHDPEILXPEEHFFFLKMGLKRKNNVPVGRRGI 83
Query: 69 FGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTVIFYRGK 128
+ GVIL+MH+H KKH+T+KV K ++ E A E+ARLSGGI + I D+T+I YRGK
Sbjct: 84 YQGVILSMHLHXKKHQTLKV-VKTFSAAEVKEIAAELARLSGGIVLDIHEDNTIIMYRGK 142
Query: 129 NYVQP--EIMSPIDTLSKKKALEKSKY--EQSLESVR-RFIAMAEKELELYYRHIALYGD 183
NY QP +IMSP +LS+KKAL+KSKY EQ L +R +F + AE + E
Sbjct: 143 NYSQPPTQIMSPRVSLSRKKALDKSKYRLEQELAILRAQFKSSAESKTE----------- 191
Query: 184 PNNRNPMSIMDNPSKVTKESWKFKMVERKSLDSTYDALS 222
+ N + + ES K + LDS D LS
Sbjct: 192 -----AAEAIQNSGRESIESGKDETDMNSELDSDSDKLS 225
>gi|168020023|ref|XP_001762543.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686276|gb|EDQ72666.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 548
Score = 129 bits (325), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 65/132 (49%), Positives = 88/132 (66%), Gaps = 2/132 (1%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
LT E+ + KK+ K NYVP+GRRG++GG I NMHMHWKKHETV++ C +I E
Sbjct: 225 LTPEQLYALKKLGYKNKNYVPVGRRGIYGGTIQNMHMHWKKHETVRIDCDNFPKEKIKEM 284
Query: 102 AEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEIMSPI--DTLSKKKALEKSKYEQSLES 159
E + RLSGGI I I T+I +RG+NY +P++ PI +K+KAL KSK+EQS+ S
Sbjct: 285 GETLERLSGGIVIDIHQGTTIIMWRGRNYKRPKVDIPIIFKNFNKRKALIKSKHEQSIGS 344
Query: 160 VRRFIAMAEKEL 171
++ I EK+L
Sbjct: 345 LKDQIVKWEKDL 356
>gi|15232195|ref|NP_189392.1| RNA-binding CRS1 / YhbY (CRM) domain protein [Arabidopsis thaliana]
gi|11994182|dbj|BAB01285.1| unnamed protein product [Arabidopsis thaliana]
gi|332643815|gb|AEE77336.1| RNA-binding CRS1 / YhbY (CRM) domain protein [Arabidopsis thaliana]
Length = 491
Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 80/169 (47%), Positives = 112/169 (66%)
Query: 3 EALLFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVP 62
E L +NL++A L +LK+Y++P++ PV P T E+ FKK+ K NYVP
Sbjct: 53 EERLIYNLKRAKKKVALLLQKLKKYDLPELPSPVHDPELFTSEQVQAFKKIGFKNKNYVP 112
Query: 63 IGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTV 122
+G RGVFGGV+ NMHMHWK HETV+V C +I E A IARLSGG+ I I T+
Sbjct: 113 VGVRGVFGGVVQNMHMHWKFHETVQVCCDNFPKEKIKEMASMIARLSGGVVINIHNVKTI 172
Query: 123 IFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKEL 171
I +RG+NY QP+ + P++TL+K+KAL K+++EQ+LES + I E++L
Sbjct: 173 IMFRGRNYRQPKNLIPVNTLTKRKALFKARFEQALESQKLNIKKTEQQL 221
>gi|297818350|ref|XP_002877058.1| hypothetical protein ARALYDRAFT_484545 [Arabidopsis lyrata subsp.
lyrata]
gi|297322896|gb|EFH53317.1| hypothetical protein ARALYDRAFT_484545 [Arabidopsis lyrata subsp.
lyrata]
Length = 488
Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 80/169 (47%), Positives = 112/169 (66%)
Query: 3 EALLFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVP 62
E L +NL++A L +LK+Y++P++ PV P T E+ FKK+ K NYVP
Sbjct: 53 EERLIYNLKRAKKKVALLLQKLKKYDLPELPSPVHDPELFTSEQVQAFKKIGFKNKNYVP 112
Query: 63 IGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTV 122
+G RGVFGGV+ NMHMHWK HETV+V C +I E A IARLSGG+ I I T+
Sbjct: 113 VGVRGVFGGVVQNMHMHWKFHETVQVCCDNFPKEKIKEMASMIARLSGGVVINIHNVKTI 172
Query: 123 IFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKEL 171
I +RG+NY QP+ + P++TL+K+KAL K+++EQ+LES + I E++L
Sbjct: 173 IMFRGRNYRQPKNLIPVNTLTKRKALFKARFEQALESQKLNIKKTEQQL 221
>gi|359488800|ref|XP_002272412.2| PREDICTED: uncharacterized protein LOC100254349 [Vitis vinifera]
Length = 666
Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 78/169 (46%), Positives = 112/169 (66%)
Query: 3 EALLFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVP 62
E L +NLR+A L +LK+YE+P++ P P LT E+ +KK+ + NYVP
Sbjct: 95 EERLIYNLRRAKKKVALLLQKLKKYELPELPAPRHDPELLTAEQLQAYKKIGFRNKNYVP 154
Query: 63 IGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTV 122
+G RGVFGGV+ NMH+HWK HETV+V C +I E A +ARLSGGI I + T+
Sbjct: 155 VGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMLARLSGGIVINVHDVKTI 214
Query: 123 IFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKEL 171
I +RG+NY QP+ + PI+TL+K+KAL K+++EQ+L+S + I E++L
Sbjct: 215 IMFRGRNYRQPKNLIPINTLTKRKALFKARFEQALDSQKLNIKKIEQQL 263
>gi|413917671|gb|AFW57603.1| hypothetical protein ZEAMMB73_144408 [Zea mays]
Length = 520
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 78/166 (46%), Positives = 107/166 (64%)
Query: 6 LFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVPIGR 65
+NLR+A L +LK+YE+P +Q P P LT E+ +KK+ + NYVP+G
Sbjct: 100 FIYNLRRAKKKVALLLQKLKKYELPDLQAPRHDPELLTAEQLQAYKKIGFRNRNYVPVGV 159
Query: 66 RGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTVIFY 125
RGVFGGV+ NMHMHWK HETV+V C +I E A + RLSGGI I I T+I +
Sbjct: 160 RGVFGGVVQNMHMHWKFHETVQVCCDNFPKEKIKEMAAMLTRLSGGIVINIHNTKTIIMF 219
Query: 126 RGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKEL 171
RG+NY QP+ + P +TL+K+KAL K+++EQ+LES + I E +L
Sbjct: 220 RGRNYRQPKNLIPFNTLTKRKALFKARFEQALESQKLNIKKIETQL 265
>gi|224055583|ref|XP_002298551.1| predicted protein [Populus trichocarpa]
gi|222845809|gb|EEE83356.1| predicted protein [Populus trichocarpa]
Length = 496
Score = 122 bits (307), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 77/169 (45%), Positives = 113/169 (66%)
Query: 3 EALLFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVP 62
E L +NL++A L +LK+Y++P++ P+ P LT E+ +KK+ + NYVP
Sbjct: 42 EERLIYNLKRAKKKVALLLQKLKKYDLPELPSPLHDPELLTPEQLQAYKKIGFRNKNYVP 101
Query: 63 IGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTV 122
+G RGVFGGV+ NMHMHWK HETV+V C +I E A IARLSGGI + + T+
Sbjct: 102 VGVRGVFGGVVQNMHMHWKFHETVQVSCDNFPKEKIKEMATMIARLSGGIVVNVHNVKTI 161
Query: 123 IFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKEL 171
I +RG+NY QP+ + P++TL+K+KAL K+++EQ+LES + I E++L
Sbjct: 162 IMFRGRNYRQPKDLIPLNTLTKRKALFKARFEQALESQKLNIKQIEQQL 210
>gi|357134703|ref|XP_003568955.1| PREDICTED: uncharacterized protein LOC100832553 [Brachypodium
distachyon]
Length = 562
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 77/166 (46%), Positives = 107/166 (64%)
Query: 6 LFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVPIGR 65
L H++R+A L +LK+YE+P + P P LT E+ +KK+ + NYVP+G
Sbjct: 112 LIHSMRRAKKKVALLLQKLKKYELPDLPAPRHDPELLTAEQLQAYKKIGFRNRNYVPVGV 171
Query: 66 RGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTVIFY 125
RGVFGGV+ NMHMHWK HETV+V C +I E A + RLSGGI + I T+I +
Sbjct: 172 RGVFGGVVQNMHMHWKFHETVQVCCDNFPKEKIKEMAAMLTRLSGGIVVNIHNTKTIIMF 231
Query: 126 RGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKEL 171
RG+NY QP+ + P +TL+K+KAL K++YEQ+LES + I E +L
Sbjct: 232 RGRNYRQPKNLIPFNTLTKRKALFKARYEQALESQKLNIKKIETQL 277
>gi|255560940|ref|XP_002521483.1| conserved hypothetical protein [Ricinus communis]
gi|223539382|gb|EEF40973.1| conserved hypothetical protein [Ricinus communis]
Length = 745
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/169 (46%), Positives = 112/169 (66%)
Query: 3 EALLFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVP 62
E L +NL++A L +LK+YE+P++ P+ P T E+ +KK+ + NYVP
Sbjct: 113 EERLIYNLKRAKKKVALLLQKLKKYELPELPPPLHDPELFTSEQLQAYKKIGFRNRNYVP 172
Query: 63 IGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTV 122
+G RGVFGGV+ NMH+HWK HETV+V C +I E A +ARLSGGI I I T+
Sbjct: 173 VGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMLARLSGGIVINIHNVKTI 232
Query: 123 IFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKEL 171
I +RG+NY QP+ + PI+TL+K+KAL K+++EQ+LES + I E++L
Sbjct: 233 IMFRGRNYRQPKNLIPINTLTKRKALFKARFEQALESQKLNIKKIEQQL 281
>gi|413950005|gb|AFW82654.1| hypothetical protein ZEAMMB73_283519 [Zea mays]
Length = 645
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 78/166 (46%), Positives = 107/166 (64%)
Query: 6 LFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVPIGR 65
L +NLR+A L +LK+YE+P + P P LT E+ +KK+ + NYVP+G
Sbjct: 97 LIYNLRRAKKKVALLLQKLKKYELPDLPAPRHDPELLTAEQLQAYKKIGFRNRNYVPVGV 156
Query: 66 RGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTVIFY 125
RGVFGGV+ NMHMHWK HETV+V C +I E A + RLSGGI I I T+I +
Sbjct: 157 RGVFGGVVQNMHMHWKFHETVQVCCDNFPKEKIKEMAAMLTRLSGGIVINIHNTKTIIMF 216
Query: 126 RGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKEL 171
RG+NY QP+ + P +TL+K+KAL K+++EQ+LES + I E +L
Sbjct: 217 RGRNYRQPKNLIPFNTLTKRKALFKARFEQALESQKLNIKKIETQL 262
>gi|449450187|ref|XP_004142845.1| PREDICTED: uncharacterized protein LOC101215761 [Cucumis sativus]
Length = 619
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 78/169 (46%), Positives = 112/169 (66%)
Query: 3 EALLFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVP 62
E L +NL++A L +LK+YE+P++ P P LT E+ +KK+ + NYVP
Sbjct: 110 EERLLYNLKRAKKKVALLLQQLKKYELPELPPPRHDPELLTPEQLQAYKKIGFRNRNYVP 169
Query: 63 IGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTV 122
+G RGVFGGV+ NMH+HWK HETV+V C +I E A +ARLSGGI + I T+
Sbjct: 170 VGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMLARLSGGIVVNIHDVKTI 229
Query: 123 IFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKEL 171
I +RG+NY QP+ + PI+TL+K+KAL K+++EQ+L+S + I E+EL
Sbjct: 230 IMFRGRNYRQPKNLIPINTLTKRKALFKARFEQALDSQKLNIKKIEQEL 278
>gi|449483922|ref|XP_004156733.1| PREDICTED: uncharacterized protein LOC101226279 [Cucumis sativus]
Length = 619
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 78/169 (46%), Positives = 112/169 (66%)
Query: 3 EALLFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVP 62
E L +NL++A L +LK+YE+P++ P P LT E+ +KK+ + NYVP
Sbjct: 110 EERLLYNLKRAKKKVALLLQQLKKYELPELPPPRHDPELLTPEQLQAYKKIGFRNRNYVP 169
Query: 63 IGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTV 122
+G RGVFGGV+ NMH+HWK HETV+V C +I E A +ARLSGGI + I T+
Sbjct: 170 VGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMLARLSGGIVVNIHDVKTI 229
Query: 123 IFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKEL 171
I +RG+NY QP+ + PI+TL+K+KAL K+++EQ+L+S + I E+EL
Sbjct: 230 IMFRGRNYRQPKNLIPINTLTKRKALFKARFEQALDSQKLNIKKIEQEL 278
>gi|356513969|ref|XP_003525680.1| PREDICTED: uncharacterized protein LOC100780131 [Glycine max]
Length = 653
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 78/169 (46%), Positives = 112/169 (66%)
Query: 3 EALLFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVP 62
E L +NL++A L +LK+YE+P++ P P LT E+ +KK+ + NYVP
Sbjct: 112 EERLIYNLKRAKKKVALLLQKLKKYELPELPPPRHDPELLTPEQLQAYKKIGFRNKNYVP 171
Query: 63 IGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTV 122
+G RGVFGGV+ NMH+HWK HETV+V C +I E A +ARLSGGI I + T+
Sbjct: 172 VGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMASMLARLSGGIVINVHNVKTI 231
Query: 123 IFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKEL 171
I +RG+NY QP+ + PI+TL+K+KAL K+++EQ+LES + I E++L
Sbjct: 232 IMFRGRNYRQPKNLIPINTLTKRKALFKARFEQALESQKLNIKKIEQQL 280
>gi|51038196|gb|AAT93999.1| unknow protein [Oryza sativa Japonica Group]
gi|222630175|gb|EEE62307.1| hypothetical protein OsJ_17096 [Oryza sativa Japonica Group]
Length = 560
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 77/166 (46%), Positives = 108/166 (65%)
Query: 6 LFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVPIGR 65
L ++LR+A L +LK+YE+P + P P LT E+ +KK+ + NYVP+G
Sbjct: 108 LIYSLRRAKKKVALLLQKLKKYELPDLPAPRHDPELLTAEQLQAYKKIGFRNRNYVPVGV 167
Query: 66 RGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTVIFY 125
RGVFGGV+ NMHMHWK HETV+V C +I E A + RLSGGI I I T+I +
Sbjct: 168 RGVFGGVVQNMHMHWKFHETVQVCCDNFPKEKIKEMAAMLTRLSGGIVINIHNTKTIIMF 227
Query: 126 RGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKEL 171
RG+NY QP+ + P++TL+K+KAL K+++EQ+LES + I E +L
Sbjct: 228 RGRNYRQPKNLIPLNTLTKRKALFKARFEQALESQKLNIKKIETQL 273
>gi|356573355|ref|XP_003554827.1| PREDICTED: uncharacterized protein LOC100782246 [Glycine max]
Length = 653
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 78/169 (46%), Positives = 112/169 (66%)
Query: 3 EALLFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVP 62
E L +NL++A L +LK+YE+P++ P P LT E+ +KK+ + NYVP
Sbjct: 112 EERLIYNLKRAKKKVALLLQKLKKYELPELPHPRHDPELLTPEQLQAYKKIGFRNKNYVP 171
Query: 63 IGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTV 122
+G RGVFGGV+ NMH+HWK HETV+V C +I E A +ARLSGGI I + T+
Sbjct: 172 VGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMASMLARLSGGIVINVHNVKTI 231
Query: 123 IFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKEL 171
I +RG+NY QP+ + PI+TL+K+KAL K+++EQ+LES + I E++L
Sbjct: 232 IMFRGRNYRQPKNLIPINTLTKRKALFKARFEQALESQKLNIKKIEQQL 280
>gi|242086871|ref|XP_002439268.1| hypothetical protein SORBIDRAFT_09g003490 [Sorghum bicolor]
gi|241944553|gb|EES17698.1| hypothetical protein SORBIDRAFT_09g003490 [Sorghum bicolor]
Length = 652
Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 78/166 (46%), Positives = 107/166 (64%)
Query: 6 LFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVPIGR 65
L +NLR+A L +LK+YE+P + P P LT E+ +KK+ + NYVP+G
Sbjct: 98 LIYNLRRAKKKVALLLQKLKKYELPDLPAPRHDPELLTAEQLQAYKKIGFRNRNYVPVGV 157
Query: 66 RGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTVIFY 125
RGVFGGV+ NMHMHWK HETV+V C +I E A + RLSGGI I I T+I +
Sbjct: 158 RGVFGGVVQNMHMHWKFHETVQVCCDNFPKEKIKEMAAMLTRLSGGIVINIHNTKTIIMF 217
Query: 126 RGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKEL 171
RG+NY QP+ + P +TL+K+KAL K+++EQ+LES + I E +L
Sbjct: 218 RGRNYRQPKNLIPFNTLTKRKALFKARFEQALESQKLNIKKIETQL 263
>gi|125550822|gb|EAY96531.1| hypothetical protein OsI_18436 [Oryza sativa Indica Group]
Length = 560
Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 77/166 (46%), Positives = 108/166 (65%)
Query: 6 LFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVPIGR 65
L ++LR+A L +LK+YE+P + P P LT E+ +KK+ + NYVP+G
Sbjct: 108 LIYSLRRAKKKVALLLQKLKKYELPDLPAPRHDPELLTAEQLQAYKKIGFRNRNYVPVGV 167
Query: 66 RGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTVIFY 125
RGVFGGV+ NMHMHWK HETV+V C +I E A + RLSGGI I I T+I +
Sbjct: 168 RGVFGGVVQNMHMHWKFHETVQVCCDNFPKEKIKEMAAMLTRLSGGIVINIHNTKTIIMF 227
Query: 126 RGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKEL 171
RG+NY QP+ + P++TL+K+KAL K+++EQ+LES + I E +L
Sbjct: 228 RGRNYRQPKNLIPLNTLTKRKALFKARFEQALESQKLNIKKIETQL 273
>gi|296087592|emb|CBI34848.3| unnamed protein product [Vitis vinifera]
Length = 545
Score = 116 bits (290), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 78/179 (43%), Positives = 112/179 (62%), Gaps = 10/179 (5%)
Query: 3 EALLFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVP 62
E L +NLR+A L +LK+YE+P++ P P LT E+ +KK+ + NYVP
Sbjct: 110 EERLIYNLRRAKKKVALLLQKLKKYELPELPAPRHDPELLTAEQLQAYKKIGFRNKNYVP 169
Query: 63 IGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTV 122
+G RGVFGGV+ NMH+HWK HETV+V C +I E A +ARLSGGI I + T+
Sbjct: 170 VGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMLARLSGGIVINVHDVKTI 229
Query: 123 IFYRGKNYVQPEIMSPIDTLSKKK----------ALEKSKYEQSLESVRRFIAMAEKEL 171
I +RG+NY QP+ + PI+TL+K+K AL K+++EQ+L+S + I E++L
Sbjct: 230 IMFRGRNYRQPKNLIPINTLTKRKATATKKAKEAALFKARFEQALDSQKLNIKKIEQQL 288
>gi|449440945|ref|XP_004138244.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Cucumis sativus]
gi|449477054|ref|XP_004154915.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Cucumis sativus]
Length = 560
Score = 106 bits (264), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 94/165 (56%), Gaps = 17/165 (10%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
+T EER F+++ + + Y+P+G RGVF GV+ NMH+HWK E VK+ K + F
Sbjct: 351 ITDEERVMFRRVGLRMTAYLPMGIRGVFDGVVENMHLHWKHRELVKLISKQ----KTLAF 406
Query: 102 AEEIARL----SGGIPIQIIGDDTV------IFYRGKNYVQPEIMSPIDTLSKKKALEKS 151
EE ARL SGGI + I D V ++YRGKNY +P + P + L+K KAL++S
Sbjct: 407 VEETARLLEYESGGILVSI---DRVPKGYALVYYRGKNYRRPIALRPRNLLTKAKALKRS 463
Query: 152 KYEQSLESVRRFIAMAEKELELYYRHIALYGDPNNRNPMSIMDNP 196
Q E++ + I+ E+ +E + I + D ++ N +S D P
Sbjct: 464 VAMQRHEALSQHISELEQNIEQMKKEIGVTEDSDDENKLSSQDRP 508
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 2/110 (1%)
Query: 27 YEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETV 86
Y+ P P LT E +K+A+ + +GR G+ + + W+K V
Sbjct: 126 YKTPFRLLPTGMRSRLTNAEMTQMRKLAKSLPCHFALGRNRNHQGLAVAILKLWEKSLVV 185
Query: 87 KVFCKPSKPGQIHEF-AEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEI 135
K+ K ++ AEEI L+GG+ + + ++ YRGK+++ P +
Sbjct: 186 KIAVKRGIQNTNNKLMAEEIGNLTGGV-LLLRNKYFIVIYRGKDFLPPSV 234
>gi|255552728|ref|XP_002517407.1| conserved hypothetical protein [Ricinus communis]
gi|223543418|gb|EEF44949.1| conserved hypothetical protein [Ricinus communis]
Length = 1009
Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/132 (38%), Positives = 78/132 (59%), Gaps = 3/132 (2%)
Query: 33 QGPVVKPHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKP 92
Q P + +T EER+ +K+ K ++ IGRRGVF G I NMH+HWK E VK+ CK
Sbjct: 570 QQPEIDKEGITDEERYMLRKVGLKMKPFLLIGRRGVFDGTIENMHLHWKYRELVKIICKE 629
Query: 93 SKPGQIHEFAEEIARLSGGIPI---QIIGDDTVIFYRGKNYVQPEIMSPIDTLSKKKALE 149
+HE A+ + SGGI + ++ ++ YRGKNY +P ++ P LSK++A++
Sbjct: 630 RSLNAVHEVAQSLEAESGGILVAVERVSKGYAIVVYRGKNYQRPALLRPPTLLSKREAMK 689
Query: 150 KSKYEQSLESVR 161
+S Q ES++
Sbjct: 690 RSLEAQRRESLK 701
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 50/103 (48%), Gaps = 1/103 (0%)
Query: 35 PVVKPHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSK 94
P + L+ EE +++ + +G+ G+ G++ +H W++ E VK+ C+
Sbjct: 151 PTLAELSLSEEELRRLRRIGIAEKRKLKVGKAGITEGIVNGIHERWRRSEVVKIVCEDLC 210
Query: 95 PGQIHEFAEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEIMS 137
+ + + R +GG+ + G ++ YRG NY+ P +S
Sbjct: 211 RMNMKRTHDLLERKTGGLVVWRAGSK-IVLYRGVNYIYPYFLS 252
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 6/101 (5%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHE- 100
LT +E K++ + + +GR G+ ++ W+K E K+ K E
Sbjct: 376 LTNDEMTTLKRLGRPLPCHFVLGRNRKLQGLAASIIKLWEKCEIAKIAVKRGVQNTNSEM 435
Query: 101 FAEEIARLSGGIPIQIIGDDT--VIFYRGKNYVQPEIMSPI 139
AEE+ RL+GG ++ D ++ YRGK+++ + S I
Sbjct: 436 MAEELKRLTGGT---LLSRDREFIVLYRGKDFLPSAVSSAI 473
>gi|224118814|ref|XP_002317913.1| predicted protein [Populus trichocarpa]
gi|222858586|gb|EEE96133.1| predicted protein [Populus trichocarpa]
Length = 806
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 102/197 (51%), Gaps = 8/197 (4%)
Query: 34 GPVVKPHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPS 93
GP ++ EER F+++ + Y+P+G RGVF GVI NMH+HWK E VK+ K
Sbjct: 603 GPDFDQETISEEERVMFRRVGLRMKAYLPLGIRGVFDGVIENMHLHWKHRELVKLISKQK 662
Query: 94 KPGQIHEFAEEIARLSGGIPIQII---GDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEK 150
+ + A+ + SGG+ + I +I+YRGKNY +P + P + L+K KAL++
Sbjct: 663 TLAFVEDTAKLLEYESGGVLVAIERVPKGFALIYYRGKNYRRPISIRPRNLLTKAKALKR 722
Query: 151 SKYEQSLESVRRFIAMAEKELELYYRHIALYGDPNNRNPMSI-----MDNPSKVTKESWK 205
S Q E++ + I EK +E + + L + N N S ++N SK+T+ K
Sbjct: 723 SVAMQRHEALSQHIFELEKNIEEMVKEMGLSKEEENENNWSSEEHAPLNNVSKLTQSEDK 782
Query: 206 FKMVERKSLDSTYDALS 222
E S D + ++
Sbjct: 783 AFFTESDSEDDYNEGIN 799
Score = 40.0 bits (92), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 1/101 (0%)
Query: 33 QGPVVKPHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKP 92
+ P + + EE ++M + I + G+ V+ N+H W+K E V++
Sbjct: 192 KAPTLAELTIEDEELRRLRRMGMFIRERISIPKAGITNAVLENIHDRWRKEELVRLKFHE 251
Query: 93 SKPGQIHEFAEEIARLSGGIPIQIIGDDTVIFYRGKNYVQP 133
+ E + R +GG+ I G V+F RG NY P
Sbjct: 252 VLAHDMKTAHEIVERRTGGLVIWRAGSVMVVF-RGTNYQGP 291
>gi|356529577|ref|XP_003533366.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 791
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 93/169 (55%), Gaps = 11/169 (6%)
Query: 34 GPVVKPHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPS 93
GP +T EER F+K+ + Y+P+G RGVF GV+ NMH+HWK E VK+ K
Sbjct: 581 GPDYDQETITDEERVMFRKVGLRMKPYLPLGIRGVFDGVVENMHLHWKHRELVKLMTK-- 638
Query: 94 KPGQIHEFAEEIARL----SGGIPI---QIIGDDTVIFYRGKNYVQPEIMSPIDTLSKKK 146
+ F E+ ARL SGGI + ++ + +I+YRGKNY +P + P + L+K K
Sbjct: 639 --QKTLAFVEDTARLLEYESGGILVAIEKVSKEFALIYYRGKNYKRPITLRPRNLLTKGK 696
Query: 147 ALEKSKYEQSLESVRRFIAMAEKELELYYRHIALYGDPNNRNPMSIMDN 195
AL++ Q E++ + I EK +E + + + D + + SI ++
Sbjct: 697 ALKRHVAMQRHEALSQHITELEKTIEQMKKELGMTQDSDVEDGGSIEED 745
>gi|168024308|ref|XP_001764678.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683972|gb|EDQ70377.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 625
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/138 (39%), Positives = 83/138 (60%), Gaps = 12/138 (8%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
L+ ER+ ++K+ K ++ +GRRGVF G + NMH+HWK E VK+ K S P
Sbjct: 442 LSDGERYMYRKLGLKMKAFLLLGRRGVFSGTVENMHLHWKYRELVKILVKTSLPE----- 496
Query: 102 AEEIARL----SGGIPIQIIGD---DTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYE 154
AE IA++ SGGI + II ++ YRGKNY +P + P L+K++AL++S
Sbjct: 497 AERIAKILENESGGILVDIITTSKGQAIVMYRGKNYQRPSELRPRHLLTKRQALKRSLEM 556
Query: 155 QSLESVRRFIAMAEKELE 172
Q +ES+ + I + +KE+E
Sbjct: 557 QRMESLEKHIRVLKKEIE 574
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 63 IGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTV 122
IGR GV G++ +H W+ E KV C + + E++ RL+GG+ I G V
Sbjct: 54 IGRLGVTPGIVEAIHERWRTCEIAKVKCDAPLSMNMKKAHEDLERLTGGLVIWRSGSAAV 113
Query: 123 IFYRGKNYVQPEI 135
+ YRGK+YV P +
Sbjct: 114 V-YRGKDYVHPSV 125
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 60 YVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHE-FAEEIARLSGGIPIQIIG 118
++ +G+ GV + W++ E VK+ K +E AEE+ RL+GG ++
Sbjct: 245 HIVLGKNRGLDGVAAAIVKLWERSEIVKIGVKRGVQNTSNERMAEELKRLTGGT---LLS 301
Query: 119 DDT--VIFYRGKNYVQPEIMSPID 140
D ++F+RGK+++ P + + ++
Sbjct: 302 RDKEFIVFHRGKDFLPPAVQAALE 325
>gi|356527819|ref|XP_003532504.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 719
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 92/172 (53%), Gaps = 17/172 (9%)
Query: 34 GPVVKPHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPS 93
GP +T EER F+ + + Y+P+G RGVF GVI NMH+HWK E VK+ K
Sbjct: 514 GPDYDKETITDEERVMFRSVGLRMKAYLPLGIRGVFDGVIENMHLHWKHRELVKLITKQ- 572
Query: 94 KPGQIHEFAEEIARL----SGGIPIQIIGDDTV------IFYRGKNYVQPEIMSPIDTLS 143
+ F E+ ARL SGGI + I D V I+YRGKNY +P + P + L+
Sbjct: 573 ---KTLAFVEDTARLLEYESGGILVAI---DKVPKGFSLIYYRGKNYRRPMTLRPRNLLT 626
Query: 144 KKKALEKSKYEQSLESVRRFIAMAEKELELYYRHIALYGDPNNRNPMSIMDN 195
K KAL++S Q E++ + + +++E + + L D ++ ++ D+
Sbjct: 627 KAKALQRSVVMQRHEALSQHVTELGEKIEEMKKKLGLSQDLGTKDRWNVEDH 678
>gi|255546121|ref|XP_002514120.1| conserved hypothetical protein [Ricinus communis]
gi|223546576|gb|EEF48074.1| conserved hypothetical protein [Ricinus communis]
Length = 930
Score = 96.7 bits (239), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 97/182 (53%), Gaps = 18/182 (9%)
Query: 10 LRKASALNKFLS--LRLKRYEVPKVQGPVVKPHE-------------LTGEERFYFKKMA 54
L K ++L K L L L + ++ K + + K HE ++ EERF F+K+
Sbjct: 695 LAKRASLVKHLENKLALAKGKLRKAEKALAKVHEHLDPSGLPTDLETISDEERFLFRKIG 754
Query: 55 QKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPI 114
Y+ +G+RGV+ G I NMH+HWK E VKV + Q+ A + SGG+ +
Sbjct: 755 LSMKPYLFLGKRGVYDGTIENMHLHWKYRELVKVIVRGKSFAQVKHIAISLEAESGGVLV 814
Query: 115 QI---IGDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKEL 171
I +I YRGKNY+ PE+M P + L+K++AL +S Q E+++ I+ ++ +
Sbjct: 815 SIERTTKGYAIIVYRGKNYLHPEVMRPKNLLTKRQALVRSIELQRREALKHHISDLQERI 874
Query: 172 EL 173
EL
Sbjct: 875 EL 876
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 7/132 (5%)
Query: 40 HELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIH 99
H LT +E F+++A+ + +GR G+ + W++ VK+ K +
Sbjct: 527 HCLTDKEMTIFRRLARTVPPHFALGRNRQLQGLAKAIVKLWERSAIVKIAIKRGVQNTRN 586
Query: 100 E-FAEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLE 158
E AEE+ L+GGI + + ++FYRG +++ P I + TL ++K L + +Q E
Sbjct: 587 ERMAEELKVLTGGILLSR-NKEYIVFYRGNDFLPPAI---VKTLKERKKL--TYLKQDEE 640
Query: 159 SVRRFIAMAEKE 170
R +A+A E
Sbjct: 641 EQARQMALASVE 652
>gi|356564786|ref|XP_003550629.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 794
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 95/178 (53%), Gaps = 8/178 (4%)
Query: 4 ALLFHNLRK-ASALNKFLSLRLKRYEVPKVQGPVVKPHEL---TGEERFYFKKMAQKRSN 59
AL+ H+ +K A A +KF +V + P P +L T EERF F+K+
Sbjct: 575 ALVKHHEKKLALAKSKFRKAEKALAKVQRDLDPADIPSDLETLTNEERFLFRKIGLSMKP 634
Query: 60 YVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGD 119
Y+ +GRR V+ G I NMH+HWK E VK+ K Q+ + + SGG+ + + D
Sbjct: 635 YLLLGRRDVYAGTIENMHLHWKYRELVKLIVKGRNSAQVKHISISLEAESGGVLVSVDKD 694
Query: 120 D----TVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKELEL 173
T+I YRGKNY P ++ P + L++++AL +S Q E+++ I+ E+ + L
Sbjct: 695 TRGHHTIIVYRGKNYFSPRVVRPKNLLTRRQALARSVELQRREALKHHISDLEERIGL 752
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 59/116 (50%), Gaps = 2/116 (1%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHE- 100
LT +E F+++A+ + + +GR G+ M W+ K+ K P ++
Sbjct: 404 LTNKEMTNFRRLARTTAPHFALGRNRELQGLARAMVKLWETSAIAKIAIKRGVPNTCNDR 463
Query: 101 FAEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQS 156
AEE+ +L+GG + + ++FYRG +++ P + + ++ K L++ + +++
Sbjct: 464 MAEELRKLTGGTLLSR-NKEYIVFYRGNDFLPPVVTNTLNERQKLTLLQQDEEDKA 518
>gi|147815878|emb|CAN72582.1| hypothetical protein VITISV_035294 [Vitis vinifera]
Length = 850
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 95/180 (52%), Gaps = 16/180 (8%)
Query: 34 GPVVKPHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPS 93
GP +T EERF F+++ + Y+ +G RGVF GVI NMH+HWK E VK+ K
Sbjct: 616 GPSDDQETITDEERFMFRRLGLRMKAYLLLGVRGVFDGVIENMHLHWKHRELVKLISKQ- 674
Query: 94 KPGQIHEFAEEIARL----SGGIPIQI---IGDDTVIFYRGKNYVQPEIMSPIDTLSKKK 146
+ F E+ ARL SGGI + I +I+YRGKNY +P + P + L+K K
Sbjct: 675 ---KTLAFVEDTARLLEYESGGILVAIERVPKGYALIYYRGKNYRRPVSLRPRNLLTKAK 731
Query: 147 ALEKSKYEQSLESVRRFIAMAEKELELYYRHIALYGDPNNRNPMSI-----MDNPSKVTK 201
AL++S Q E++ + I+ E+ +E I D +++ S D S+V+K
Sbjct: 732 ALKRSVAMQRHEALSQHISELERTIEQMKMEIGDSKDAEDKDSWSTEGHGQFDQVSEVSK 791
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 4/118 (3%)
Query: 23 RLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKK 82
RLKR V+ P + + EE +++ + + + G+ V+ +H W+K
Sbjct: 198 RLKRR---AVRAPTLAELTIEDEELRRLRRLGMTIRERINVPKAGITQAVLGKIHEKWRK 254
Query: 83 HETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEIMSPID 140
E V++ + + E + R +GG+ G V+F RG NY P P+D
Sbjct: 255 EELVRLKFHEALAHDMKTAHEIVERRTGGLVTWRSGSVMVVF-RGTNYEGPPKPQPVD 311
Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 54/110 (49%), Gaps = 5/110 (4%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
LT E +K+A+ + +GR G+ + W+K VK+ KP ++
Sbjct: 412 LTNAEMTNLRKLAKSLPCHFALGRNRNHQGLAAAIIKLWEKSIVVKIAVKPGIQNTNNKL 471
Query: 102 -AEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEK 150
AEEI L+GG+ + + ++ YRGK+++ + + LS+++ L K
Sbjct: 472 MAEEIKNLTGGV-LLLRNKYYIVIYRGKDFLPTSVAA---ALSEREELTK 517
>gi|224111046|ref|XP_002315729.1| predicted protein [Populus trichocarpa]
gi|222864769|gb|EEF01900.1| predicted protein [Populus trichocarpa]
Length = 894
Score = 96.3 bits (238), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 95/175 (54%), Gaps = 11/175 (6%)
Query: 19 FLSLRLKRYE--VPKVQGPV------VKPHELTGEERFYFKKMAQKRSNYVPIGRRGVFG 70
F +L+R E + KV+G + P +T EERF F+K+ + ++ +GRRGVF
Sbjct: 603 FAQRKLRRAERTLNKVEGFLKPSERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFD 662
Query: 71 GVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPI---QIIGDDTVIFYRG 127
G + NMH+HWK E VK+ K Q+ + A + SGG+ + +I +I YRG
Sbjct: 663 GTVENMHLHWKYRELVKIILKAKSFEQVKKIALALEAESGGVLVSVDKISKGYAIIVYRG 722
Query: 128 KNYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKELELYYRHIALYG 182
K+Y +P ++ P + L+K+KAL +S Q E+++ ++ E ++E I G
Sbjct: 723 KDYQRPSMLRPKNLLTKRKALARSIEIQRSEALQNHVSALEIKVEKIRSEIEQMG 777
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 55/110 (50%), Gaps = 10/110 (9%)
Query: 50 FKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHE-FAEEIARL 108
+++A+ + +GR G+ + M W+K VKV K E AE+I +L
Sbjct: 429 LRRLARVLPPHFAVGRSRQLQGLAVAMIKLWEKSSIVKVALKRGVQLTTSERMAEDIKKL 488
Query: 109 SGGIPIQIIGDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLE 158
+GG+ + D ++FYRGK+++ PE+ + LE+ + +SL+
Sbjct: 489 TGGLLLSR-NKDFLVFYRGKDFLSPEVSEAL--------LERERLAKSLQ 529
>gi|297734212|emb|CBI15459.3| unnamed protein product [Vitis vinifera]
Length = 830
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 90/165 (54%), Gaps = 11/165 (6%)
Query: 34 GPVVKPHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPS 93
GP +T EERF F+++ + Y+ +G RGVF GVI NMH+HWK E VK+ K
Sbjct: 616 GPSDDQETITDEERFMFRRLGLRMKAYLLLGVRGVFDGVIENMHLHWKHRELVKLISKQ- 674
Query: 94 KPGQIHEFAEEIARL----SGGIPI---QIIGDDTVIFYRGKNYVQPEIMSPIDTLSKKK 146
+ F E+ ARL SGGI + ++ +I+YRGKNY +P + P + L+K K
Sbjct: 675 ---KTLAFVEDTARLLEYESGGILVAIERVPKGYALIYYRGKNYRRPVSLRPRNLLTKAK 731
Query: 147 ALEKSKYEQSLESVRRFIAMAEKELELYYRHIALYGDPNNRNPMS 191
AL++S Q E++ + I+ E+ +E I D +++ S
Sbjct: 732 ALKRSVAMQRHEALSQHISELERTIEQMKMEIGDSKDAEDKDSWS 776
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 4/118 (3%)
Query: 23 RLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKK 82
RLKR V+ P + + EE +++ + + + G+ V+ +H W+K
Sbjct: 198 RLKRR---AVRAPTLAELTIEDEELRRLRRLGMTIRERINVPKAGITQAVLGKIHEKWRK 254
Query: 83 HETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEIMSPID 140
E V++ + + E + R +GG+ G V+F RG NY P P+D
Sbjct: 255 EELVRLKFHEALAHDMKTAHEIVERRTGGLVTWRSGSVMVVF-RGTNYEGPPKPQPVD 311
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 54/110 (49%), Gaps = 5/110 (4%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
LT E +K+A+ + +GR G+ + W+K VK+ KP ++
Sbjct: 412 LTNAEMTNLRKLAKSLPCHFALGRNRNHQGLAAAIIKLWEKSIVVKIAVKPGIQNTNNKL 471
Query: 102 -AEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEK 150
AEEI L+GG+ + + ++ YRGK+++ + + LS+++ L K
Sbjct: 472 MAEEIKNLTGGV-LLLRNKYYIVIYRGKDFLPTSVAA---ALSEREELTK 517
>gi|15229636|ref|NP_188468.1| CRS1 / YhbY (CRM) domain-containing protein [Arabidopsis thaliana]
gi|11994102|dbj|BAB01105.1| unnamed protein product [Arabidopsis thaliana]
gi|17380904|gb|AAL36264.1| unknown protein [Arabidopsis thaliana]
gi|332642570|gb|AEE76091.1| CRS1 / YhbY (CRM) domain-containing protein [Arabidopsis thaliana]
Length = 848
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/146 (39%), Positives = 83/146 (56%), Gaps = 11/146 (7%)
Query: 34 GPVVKPHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPS 93
GP ++ EER F+K+ K Y+PIG RGVF GVI NMH+HWK E VK+ K
Sbjct: 645 GPDYDQEVISEEERAMFRKVGLKMKAYLPIGIRGVFDGVIENMHLHWKHRELVKLISKQK 704
Query: 94 KPGQIHEFAEEIARL----SGGIPI---QIIGDDTVIFYRGKNYVQPEIMSPIDTLSKKK 146
F EE ARL SGG+ + ++ +I+YRGKNY +P + P + L+K K
Sbjct: 705 N----QAFVEETARLLEYESGGVLVAIEKVPKGFALIYYRGKNYRRPISLRPRNLLTKAK 760
Query: 147 ALEKSKYEQSLESVRRFIAMAEKELE 172
AL++S Q E++ + I+ E+ +E
Sbjct: 761 ALKRSIAMQRHEALSQHISELERTIE 786
>gi|77551737|gb|ABA94534.1| CRS1/YhbY domain containing protein, expressed [Oryza sativa
Japonica Group]
Length = 886
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 75/130 (57%), Gaps = 3/130 (2%)
Query: 39 PHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQI 98
P +T EERF F+K+ + ++ +GRRGVF G I NMH+HWK E VK+ K G +
Sbjct: 589 PETITDEERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWKYRELVKILVKAKSFGDV 648
Query: 99 HEFAEEIARLSGGIPI---QIIGDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQ 155
+ A + SGGI + ++ ++ +RGK+Y +P + P + LSK+KAL +S Q
Sbjct: 649 KKIALSLEAESGGILVSVDKVSKGYAIVVFRGKDYARPSKLRPRNLLSKRKALARSIEIQ 708
Query: 156 SLESVRRFIA 165
E++ IA
Sbjct: 709 RREALSHHIA 718
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 62/123 (50%), Gaps = 11/123 (8%)
Query: 37 VKPHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPG 96
V+P L+ + +++A+ + +GR G+ M W+K K+ K
Sbjct: 376 VRPS-LSRRDTTNLRRLARGLPPHFALGRSRQLQGLAAAMVKLWEKSSIAKIALKRGVQL 434
Query: 97 QIHE-FAEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQ 155
E AE+I +L+GG+ + +D ++FYRGK+++ PE+ +K LE+ ++ +
Sbjct: 435 TTSERMAEDIKKLTGGVMLSR-NNDFMVFYRGKDFLSPELA--------EKLLERERWAK 485
Query: 156 SLE 158
SL+
Sbjct: 486 SLQ 488
>gi|168038664|ref|XP_001771820.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676951|gb|EDQ63428.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1106
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 80/134 (59%), Gaps = 4/134 (2%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
L+ ER+ +++ K Y+ +GRRGVFGG + NMH+HWK E VK+ K + + +
Sbjct: 753 LSEAERYMYRQQGLKHKGYLLLGRRGVFGGTVENMHLHWKHRELVKILVK-APIAEAQQT 811
Query: 102 AEEIARLSGGIPIQIIGDD---TVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLE 158
A+ + R SGGI + I+ +I YRGKNY +P + P L+K++AL++S Q ++
Sbjct: 812 AKMLERESGGILVDIVNTSKGQAIIVYRGKNYQRPSELRPRHLLTKRQALKRSLEVQRMQ 871
Query: 159 SVRRFIAMAEKELE 172
S+ + I + E+E
Sbjct: 872 SLEKHIQILMTEIE 885
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 1/106 (0%)
Query: 31 KVQGPVVKPHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFC 90
+V+ P V L E + + + + IGR GV G++ +H W+ E KV C
Sbjct: 314 RVRSPSVAELTLPEPELRRLRTLGLQLQGRLKIGRLGVTPGIVEAIHDRWRTSELAKVKC 373
Query: 91 KPSKPGQIHEFAEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEIM 136
+ + E++ RL+GG+ I G V+ YRGK+YV P ++
Sbjct: 374 DAPLSMNMKKAHEDLERLTGGLVIWRAGSAAVV-YRGKDYVHPFVL 418
>gi|224091282|ref|XP_002309217.1| predicted protein [Populus trichocarpa]
gi|222855193|gb|EEE92740.1| predicted protein [Populus trichocarpa]
Length = 977
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 80/137 (58%), Gaps = 7/137 (5%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
++ EERF F+K+ Y+ +GRRGVF G I NMH+HWK E VK+ + Q+
Sbjct: 780 ISDEERFLFRKIGLSMKPYLFLGRRGVFDGTIENMHLHWKYRELVKIIVERKGIAQVKHI 839
Query: 102 AEEIARLSGGIPIQIIGDDT-----VIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQS 156
A + SGG+ + + D T +I YRGKNY++P+ M P + L++++AL +S Q
Sbjct: 840 AISLEAESGGVLVSV--DRTTKGYAIIVYRGKNYMRPQAMRPENLLTRRQALARSVELQR 897
Query: 157 LESVRRFIAMAEKELEL 173
E+++ I ++ +EL
Sbjct: 898 YEALKHHITDLQERIEL 914
Score = 40.0 bits (92), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 67/148 (45%), Gaps = 9/148 (6%)
Query: 29 VPKVQGPV------VKPHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKK 82
VP + P+ VKP L+ + F+++A+ + +GR G+ M W++
Sbjct: 549 VPGYKSPLRLLPYGVKPC-LSNKNTTNFRRLARTTPPHFVLGRNRELQGLANAMVKLWER 607
Query: 83 HETVKVFCKPSKPGQIHEF-AEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEIMSPIDT 141
K+ K +E AEE+ RL+GG + + ++FYRG +++ P I +
Sbjct: 608 SAIAKIAIKRGVQYTRNEIMAEELKRLTGGTLLSR-NKEYIVFYRGNDFLPPVINETLKE 666
Query: 142 LSKKKALEKSKYEQSLESVRRFIAMAEK 169
K L + + +Q+ + FI + K
Sbjct: 667 RRKLAFLYQDEEDQARQMTSAFIGSSVK 694
>gi|302805129|ref|XP_002984316.1| hypothetical protein SELMODRAFT_120007 [Selaginella moellendorffii]
gi|300148165|gb|EFJ14826.1| hypothetical protein SELMODRAFT_120007 [Selaginella moellendorffii]
Length = 692
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 81/145 (55%), Gaps = 4/145 (2%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
+T EER+ FKK+ + ++ IGRRGVF GVI NMH+HWK E VK+ K E
Sbjct: 487 ITEEERYMFKKLGLRMDAFLLIGRRGVFDGVIENMHLHWKHRELVKLILKEKDKAIALEV 546
Query: 102 AEEIARLSGGIPIQIIGD---DTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLE 158
A+ + SGGI + ++ +I YRGKNY +P + P L+K+KAL +SK Q +
Sbjct: 547 AKMLEIESGGILVGVVTTSKGQAIIVYRGKNYQRPAELRPRSLLTKRKALARSKEIQRKK 606
Query: 159 SVRRFIAMAEKELELYYRHIALYGD 183
+++ I E EL + R L D
Sbjct: 607 ALQLHIEKLE-ELIMKLRKDYLLAD 630
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 50 FKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLS 109
+++A + N + +G GV V+ ++H W+K E VK+ C + + +E+ +
Sbjct: 88 LQRIAIRVVNPIKVGYLGVTKAVVQDIHRRWQKCEVVKIQCDGPAAINMKQTHDELETKT 147
Query: 110 GGIPIQIIGDDTVIFYRGKNY 130
GG+ + G I YRGK Y
Sbjct: 148 GGLVVWRTG-GMAILYRGKGY 167
>gi|356522763|ref|XP_003530015.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 734
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/146 (38%), Positives = 83/146 (56%), Gaps = 11/146 (7%)
Query: 34 GPVVKPHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPS 93
GP +T EER F+K+ + Y+P+G RGVF GV+ NMH+HWK E VK+ K
Sbjct: 581 GPDYDQETITDEERVMFRKVGLRMKPYLPLGIRGVFDGVVENMHLHWKHRELVKLMTK-- 638
Query: 94 KPGQIHEFAEEIARL----SGGIPI---QIIGDDTVIFYRGKNYVQPEIMSPIDTLSKKK 146
+ F E+ ARL SGGI + ++ + +I+YRGKNY +P + P + L+K K
Sbjct: 639 --QKTVAFVEDTARLLEYESGGILVAIEKVSKEFALIYYRGKNYKRPITLRPRNLLTKGK 696
Query: 147 ALEKSKYEQSLESVRRFIAMAEKELE 172
AL++ Q E++ + I EK +E
Sbjct: 697 ALKRHVAMQRHEALSQHITELEKTIE 722
>gi|162459980|ref|NP_001106061.1| CRM family member 3 [Zea mays]
gi|156789080|gb|ABU96081.1| CRM family member 3 [Zea mays]
Length = 842
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 77/137 (56%), Gaps = 3/137 (2%)
Query: 39 PHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQI 98
P +T EERF F+K+ + ++ +GRRGVF G I NMH+HWK E VK+ K +
Sbjct: 581 PETITDEERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWKYRELVKILVKAKSFADV 640
Query: 99 HEFAEEIARLSGGIPI---QIIGDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQ 155
A + SGGI + ++ ++ +RGKNY +P + P + LSK+KAL +S Q
Sbjct: 641 KRIALSLEAESGGILVSVDKVSKGYAIVVFRGKNYRRPSSLRPRNLLSKRKALARSIELQ 700
Query: 156 SLESVRRFIAMAEKELE 172
+++ R A +++E
Sbjct: 701 RHQALSRHFAKLNRKVE 717
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 67/150 (44%), Gaps = 15/150 (10%)
Query: 37 VKPHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPG 96
V+P L+ + +++A+ + +GR G+ M W+K K+ K
Sbjct: 369 VRPS-LSRRDTTNLRRLARGLPPHFALGRSRQLQGLANAMVKLWEKSSIAKIALKRGVQL 427
Query: 97 QIHE-FAEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQ 155
E AE+I +L+GG+ + ++ ++FYRGK+++ E+ + L +++ L KS Q
Sbjct: 428 TTSERMAEDIKKLTGGVMLSR-NNEFIVFYRGKDFLSSELA---EVLLERERLAKSL--Q 481
Query: 156 SLESVRRFIAMAEKELELYYRHIALYGDPN 185
E RR A Y+ Y P
Sbjct: 482 DEEEARRKAAS-------YFSSAETYAQPT 504
>gi|326507446|dbj|BAK03116.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 775
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/146 (39%), Positives = 82/146 (56%), Gaps = 11/146 (7%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
+T EER F+++ K Y+P+G RGVF GVI NMH+HWK E VK+ K + F
Sbjct: 590 ITAEERSVFRRIGLKMKAYLPVGIRGVFDGVIENMHLHWKHREVVKLITKQ----KTLAF 645
Query: 102 AEEIARL----SGGIPIQII---GDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYE 154
EE ARL SGGI + I +IFYRGKNY +P + P + L+K KAL+++
Sbjct: 646 VEETARLLEYESGGILVAIERVPKGHALIFYRGKNYRRPINIRPRNLLTKAKALKRAVAM 705
Query: 155 QSLESVRRFIAMAEKELELYYRHIAL 180
Q E++ + I E ++ R + +
Sbjct: 706 QRHEALSQHIDQLEINMKQMKRDLGM 731
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 50/121 (41%), Gaps = 1/121 (0%)
Query: 31 KVQGPVVKPHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFC 90
+V+ P + + E + M + + + + GV + +H W+K E V++
Sbjct: 166 RVRAPSLAELTMDDVELRRLRGMGMTLKDRITVPKAGVTQAITEKIHDAWRKSELVRLKF 225
Query: 91 KPSKPGQIHEFAEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEK 150
+ E + R +GG+ I G ++ YRG NY +P +D S + E
Sbjct: 226 HEDHANDMKTAHELVERRTGGLIIWRAG-SVMVVYRGSNYTRPLKSQTLDGTSSPRKQED 284
Query: 151 S 151
S
Sbjct: 285 S 285
>gi|224059986|ref|XP_002300024.1| predicted protein [Populus trichocarpa]
gi|222847282|gb|EEE84829.1| predicted protein [Populus trichocarpa]
Length = 1012
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 83/155 (53%), Gaps = 6/155 (3%)
Query: 10 LRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVPIGRRGVF 69
L K + K LS L++ E+ Q P +T EER+ +K+ K ++ +G RGVF
Sbjct: 554 LEKKAKAEKLLS-ELEKSEMS--QQPEKDKEGITEEERYMLRKIGLKMKPFLLMGERGVF 610
Query: 70 GGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDD---TVIFYR 126
G I NMH+HWK E VK+ CK + A + SGGI + + G +I YR
Sbjct: 611 DGTIENMHLHWKYRELVKIICKEKSFQAVQAVARTLEAESGGILVAVEGVSKGYAIILYR 670
Query: 127 GKNYVQPEIMSPIDTLSKKKALEKSKYEQSLESVR 161
GKNY +P + P LSK++A+++S Q ES++
Sbjct: 671 GKNYTRPACLRPPTLLSKRQAMKRSLEAQRRESLK 705
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 53 MAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGI 112
+A+KR + +G+ G+ G++ +H W++ E VK+ C+ + + + R +GG+
Sbjct: 175 IAEKRK--LKVGKAGITEGIVNGIHERWRRSEVVKIVCEDLCRMNMKRTHDLLERKTGGL 232
Query: 113 PIQIIGDDTVIFYRGKNYVQPEIMSPIDTLSK 144
+ +G ++ YRG +Y P ++ ++++
Sbjct: 233 VVWRVGSK-IVLYRGADYKYPYFLAETSSVNE 263
Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 53/112 (47%), Gaps = 6/112 (5%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
LT +E K++ + + +GR G+ ++ W+K E K+ K E
Sbjct: 381 LTNDEMTTLKRLGRPLPCHFALGRNTKHQGLAASIVKLWEKCEIAKIAVKRGVQNTNSEL 440
Query: 102 -AEEIARLSGGIPIQIIGDDT--VIFYRGKNYVQPEIMSPIDTLSKKKALEK 150
A+E+ L+GG ++ D ++ YRGK+++ + S I+ K+ ++K
Sbjct: 441 MAQELKWLTGGT---LLSRDREFIVLYRGKDFLPSAVSSAIEDRRKRGDMDK 489
>gi|255551945|ref|XP_002517017.1| conserved hypothetical protein [Ricinus communis]
gi|223543652|gb|EEF45180.1| conserved hypothetical protein [Ricinus communis]
Length = 773
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 83/144 (57%), Gaps = 3/144 (2%)
Query: 39 PHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQI 98
P +T EERF F+K+ + ++ +GRRGVF G + NMH+HWK E VK+ K Q+
Sbjct: 523 PESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIILKAKNIEQV 582
Query: 99 HEFAEEIARLSGGIPI---QIIGDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQ 155
+ A + SGGI + ++ +I +RGK+Y +P + P + L+K+KAL +S Q
Sbjct: 583 KKIALALEAESGGILVSVDRVSKGYAIIVFRGKDYQRPSKLRPGNLLTKRKALARSIEIQ 642
Query: 156 SLESVRRFIAMAEKELELYYRHIA 179
E++ + I+ +K+++ IA
Sbjct: 643 RSEALLKHISALQKKVDKIRYEIA 666
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 56/118 (47%), Gaps = 10/118 (8%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHE- 100
L +E +++A+ + +GR G+ M W+K K+ K E
Sbjct: 313 LGQKEATSLRRLARILPPHFALGRSRQLQGLADAMIKLWEKSSIAKISLKRGVQLTTSER 372
Query: 101 FAEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLE 158
AE+I +L+GG+ + D ++FYRGK+++ PE+ + +E+ + QSL+
Sbjct: 373 MAEDIKKLTGGMLLSR-NKDFLVFYRGKDFLSPEVTEAL--------VERERLAQSLQ 421
>gi|47900539|gb|AAT39274.1| unknown protein [Oryza sativa Japonica Group]
gi|50878415|gb|AAT85189.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 798
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 59/146 (40%), Positives = 84/146 (57%), Gaps = 15/146 (10%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
+T EER F+++ + Y+P+G RGVF GVI NMH+HWK E VK+ K + F
Sbjct: 598 ITDEERSVFRRIGLRLKAYLPVGIRGVFDGVIENMHLHWKHREVVKLITKQ----KTLPF 653
Query: 102 AEEIARL----SGGIPI---QIIGDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYE 154
EE ARL SGGI + ++ +IFYRGKNY +P + P + L+K KAL+++
Sbjct: 654 VEETARLLEYESGGILVAIERVTKGYALIFYRGKNYRRPINIRPRNLLTKAKALKRAVAM 713
Query: 155 QSLESVRRFIAMAEKELELYYRHIAL 180
Q E++ + IA ELE R + L
Sbjct: 714 QRHEALSQHIA----ELENNIRQMKL 735
>gi|222632479|gb|EEE64611.1| hypothetical protein OsJ_19463 [Oryza sativa Japonica Group]
Length = 601
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 59/146 (40%), Positives = 84/146 (57%), Gaps = 15/146 (10%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
+T EER F+++ + Y+P+G RGVF GVI NMH+HWK E VK+ K + F
Sbjct: 401 ITDEERSVFRRIGLRLKAYLPVGIRGVFDGVIENMHLHWKHREVVKLITKQ----KTLPF 456
Query: 102 AEEIARL----SGGIPI---QIIGDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYE 154
EE ARL SGGI + ++ +IFYRGKNY +P + P + L+K KAL+++
Sbjct: 457 VEETARLLEYESGGILVAIERVTKGYALIFYRGKNYRRPINIRPRNLLTKAKALKRAVAM 516
Query: 155 QSLESVRRFIAMAEKELELYYRHIAL 180
Q E++ + IA ELE R + L
Sbjct: 517 QRHEALSQHIA----ELENNIRQMKL 538
>gi|414591664|tpg|DAA42235.1| TPA: CRM family member 3 [Zea mays]
Length = 1523
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 77/137 (56%), Gaps = 3/137 (2%)
Query: 39 PHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQI 98
P +T EERF F+K+ + ++ +GRRGVF G I NMH+HWK E VK+ K +
Sbjct: 1262 PETITDEERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWKYRELVKILVKAKSFADV 1321
Query: 99 HEFAEEIARLSGGIPI---QIIGDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQ 155
A + SGGI + ++ ++ +RGKNY +P + P + LSK+KAL +S Q
Sbjct: 1322 KRIALSLEAESGGILVSVDKVSKGYAIVVFRGKNYRRPSSLRPRNLLSKRKALARSIELQ 1381
Query: 156 SLESVRRFIAMAEKELE 172
+++ R A +++E
Sbjct: 1382 RHQALSRHFAKLNRKVE 1398
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 65/139 (46%), Gaps = 8/139 (5%)
Query: 37 VKPHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPG 96
V+P L+ + +++A+ + +GR G+ M W+K K+ K
Sbjct: 1050 VRP-SLSRRDTTNLRRLARGLPPHFALGRSRQLQGLANAMVKLWEKSSIAKIALKRGVQL 1108
Query: 97 QIHE-FAEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQ 155
E AE+I +L+GG+ + ++ ++FYRGK+++ E+ + L +++ L KS Q
Sbjct: 1109 TTSERMAEDIKKLTGGVMLSR-NNEFIVFYRGKDFLSSELA---EVLLERERLAKSL--Q 1162
Query: 156 SLESVRRFIAMAEKELELY 174
E RR A E Y
Sbjct: 1163 DEEEARRKAASYFSSAETY 1181
>gi|356576487|ref|XP_003556362.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 835
Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 79/136 (58%), Gaps = 3/136 (2%)
Query: 39 PHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQI 98
P +T EERF F+K+ + ++ +GRRGVF G I NMH+HWK E VK+ K Q+
Sbjct: 627 PESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWKYRELVKIIVKAKTFEQV 686
Query: 99 HEFAEEIARLSGGIPI---QIIGDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQ 155
+ A + SGG+ + ++ +VI YRGK+Y +P + P + L+K+KAL +S Q
Sbjct: 687 KKIALALEAESGGVLVSVDKVSKGYSVIVYRGKDYQRPSTLRPKNLLTKRKALARSIELQ 746
Query: 156 SLESVRRFIAMAEKEL 171
E++ I+ + ++
Sbjct: 747 RHEALMNHISTLQSKV 762
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 63 IGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTV 122
IGR GV V+ +H WK E V++ + + E + R +GG+ I G ++V
Sbjct: 232 IGRSGVTQAVVDKIHERWKTSEIVRLKFEGEAALNMKRMHEILERKTGGLVIWRSG-NSV 290
Query: 123 IFYRGKNYVQPEI 135
YRG +Y P +
Sbjct: 291 SLYRGVSYEVPSV 303
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Query: 46 ERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHE-FAEE 104
E +++A+ + +GR G+ + M W+ KV K E AEE
Sbjct: 421 EATALRRIARTLPPHFALGRNRQLQGLAVAMIKLWEISSIAKVALKRGVQLTTSERMAEE 480
Query: 105 IARLSGGIPIQIIGDDTVIFYRGKNYVQPEIMSPI 139
I +L+GGI + D ++F+RGKN++ ++ +
Sbjct: 481 IKKLTGGILLSR-NKDFLVFFRGKNFLSADVTQAL 514
>gi|326521980|dbj|BAK04118.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 232
Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 57/146 (39%), Positives = 81/146 (55%), Gaps = 11/146 (7%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
+T EER F+++ K Y+P+G RGVF GVI NMH+HWK E VK+ K F
Sbjct: 47 ITAEERSVFRRIGLKMKAYLPVGIRGVFDGVIENMHLHWKHREVVKLITKQKTLA----F 102
Query: 102 AEEIARL----SGGIPIQII---GDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYE 154
EE ARL SGGI + I +IFYRGKNY +P + P + L+K KAL+++
Sbjct: 103 VEETARLLEYESGGILVAIERVPKGHALIFYRGKNYRRPINIRPRNLLTKAKALKRAVAM 162
Query: 155 QSLESVRRFIAMAEKELELYYRHIAL 180
Q E++ + I E ++ R + +
Sbjct: 163 QRHEALSQHIDQLEINMKQMKRDLGM 188
>gi|357128578|ref|XP_003565949.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Brachypodium distachyon]
Length = 782
Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 52/133 (39%), Positives = 78/133 (58%), Gaps = 3/133 (2%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
+T EER F+++ K Y+P+G RGVF GVI NMH+HWK E VK+ K ++E
Sbjct: 593 ITDEERSVFRRIGLKMKAYLPVGIRGVFDGVIENMHLHWKHREVVKLITKQKTLAFVNET 652
Query: 102 AEEIARLSGGIPI---QIIGDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLE 158
A + SGGI + ++ +IFYRGKNY +P + P + L+K KAL+++ Q E
Sbjct: 653 ARLLEYESGGILVAVERVPKGYALIFYRGKNYRRPINIRPRNLLTKAKALKRAVAMQRHE 712
Query: 159 SVRRFIAMAEKEL 171
++ + IA E +
Sbjct: 713 ALSQHIAQLESNM 725
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 50/121 (41%), Gaps = 1/121 (0%)
Query: 31 KVQGPVVKPHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFC 90
+V+ P + + E + M + + + + GV V +H W+K E V++
Sbjct: 169 RVKAPSLAELTMDDAELRRLRGMGMTLRDRITVPKAGVTQAVTEKIHDAWRKSELVRLKF 228
Query: 91 KPSKPGQIHEFAEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEK 150
+ E + R +GG+ I G ++ YRG NY +P +D S + E
Sbjct: 229 HEDLANDMKTAHELVERRTGGLIIWRAG-SVMVVYRGNNYTRPTKSQTLDGTSSTRKGED 287
Query: 151 S 151
+
Sbjct: 288 N 288
>gi|302766798|ref|XP_002966819.1| hypothetical protein SELMODRAFT_408011 [Selaginella moellendorffii]
gi|300164810|gb|EFJ31418.1| hypothetical protein SELMODRAFT_408011 [Selaginella moellendorffii]
Length = 672
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 76/121 (62%), Gaps = 3/121 (2%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFC-KPSKPGQIHE 100
L+ E ++ ++ K N+ +G+RG++GGVI N+H +WK HETV++ C + + +
Sbjct: 125 LSEGEAAHYARIGNKNQNFASVGKRGIYGGVIHNIHTNWKFHETVRIKCPRHNSMEETRR 184
Query: 101 FAEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEIMSP--IDTLSKKKALEKSKYEQSLE 158
E+ARLSGGI + ++ D TVI +RGKNY PE + P ++ + ++ A + +++L+
Sbjct: 185 IGAELARLSGGIVLDVLEDRTVIMFRGKNYQTPEELYPPTLEAVDRRNADSRHHIQRALD 244
Query: 159 S 159
S
Sbjct: 245 S 245
>gi|222616258|gb|EEE52390.1| hypothetical protein OsJ_34482 [Oryza sativa Japonica Group]
Length = 560
Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 69/116 (59%), Gaps = 3/116 (2%)
Query: 39 PHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQI 98
P +T EERF F+K+ + ++ +GRRGVF G I NMH+HWK E VK+ K G +
Sbjct: 435 PETITDEERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWKYRELVKILVKAKSFGDV 494
Query: 99 HEFAEEIARLSGGIPI---QIIGDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKS 151
+ A + SGGI + ++ ++ +RGK+Y +P + P + LSK+KAL +S
Sbjct: 495 KKIALSLEAESGGILVSVDKVSKGYAIVVFRGKDYARPSKLRPRNLLSKRKALARS 550
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 62/124 (50%), Gaps = 11/124 (8%)
Query: 37 VKPHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPG 96
V+P L+ + +++A+ + +GR G+ M W+K K+ K
Sbjct: 222 VRPS-LSRRDTTNLRRLARGLPPHFALGRSRQLQGLAAAMVKLWEKSSIAKIALKRGVQL 280
Query: 97 QIHE-FAEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQ 155
E AE+I +L+GG+ + +D ++FYRGK+++ PE+ +K LE+ ++ +
Sbjct: 281 TTSERMAEDIKKLTGGVMLSR-NNDFMVFYRGKDFLSPELA--------EKLLERERWAK 331
Query: 156 SLES 159
SL+
Sbjct: 332 SLQD 335
>gi|357156286|ref|XP_003577404.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Brachypodium distachyon]
Length = 881
Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 78/133 (58%), Gaps = 4/133 (3%)
Query: 37 VKPHE-LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKP 95
PHE +T EERF F+K+ + ++ +GRRGVF G I NMH+HWK E VK+ K
Sbjct: 580 TNPHETITEEERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWKYRELVKILVKVKSF 639
Query: 96 GQIHEFAEEIARLSGGIPI---QIIGDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSK 152
++ A + SGGI + ++ ++ +RGK+Y +P ++ P + LSK+KAL +S
Sbjct: 640 TEVKRIALSLEVESGGILVSVDKVSKGYAIVVFRGKDYRRPSMLRPRNLLSKRKALARSI 699
Query: 153 YEQSLESVRRFIA 165
Q ++++ R I
Sbjct: 700 EIQRMQALNRHIG 712
Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 38/189 (20%), Positives = 82/189 (43%), Gaps = 21/189 (11%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHE- 100
L+ ++ +++ + + +GR G+ M W++ K+ K E
Sbjct: 374 LSRKDTTNLRRLGRGLPPHFALGRSRQLQGLAAAMVKLWERSSIAKIALKRGVQLTTSER 433
Query: 101 FAEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQS--LE 158
AE++ +L+GG+ + +D V+FYRGK+++ E+ + L ++++++ + E+ L+
Sbjct: 434 MAEDLKKLTGGVMLSR-NNDFVVFYRGKDFLSSELAEVL--LERERSMKSLQDEEQARLD 490
Query: 159 SVRRFIAMAEK--------ELELYYRHIALYGDPNNRNPMSIMDNPSKVTKES------- 203
F + E LE + YG+ + N M M + K +
Sbjct: 491 RTPSFASSTEAFIEPSVAGTLEETLEANSKYGNKVDENHMDKMTKTVEAAKHADVVRKLE 550
Query: 204 WKFKMVERK 212
WK + E++
Sbjct: 551 WKLSLAEKR 559
>gi|326492672|dbj|BAJ90192.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 879
Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 74/129 (57%), Gaps = 3/129 (2%)
Query: 39 PHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQI 98
P +T EERF F+K+ + ++ +GRRGVF G I NMH+HWK E VK+ K +
Sbjct: 598 PETITDEERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWKYRELVKILVKAKSFADV 657
Query: 99 HEFAEEIARLSGGIPIQIIGDD---TVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQ 155
A + SGG+ + + ++ +RGK+Y +P ++ P + LSK+KAL +S Q
Sbjct: 658 KRTALSLEVESGGVLVSVDKVSKGYAIVVFRGKDYKRPSMLRPRNLLSKRKALARSIELQ 717
Query: 156 SLESVRRFI 164
+E++ R I
Sbjct: 718 RMEALGRHI 726
Score = 40.4 bits (93), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 59/115 (51%), Gaps = 4/115 (3%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHE- 100
L+ ++ +++A+ + +GR G+ M W++ KV K E
Sbjct: 389 LSRKDTTNLRRLARGLPPHFALGRSRQLQGLAAAMVKLWERSSIAKVALKRGVQLTTSER 448
Query: 101 FAEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQ 155
AE+I +L+GG+ + +D V+FYRGK+++ E+ + L ++++++ + E+
Sbjct: 449 MAEDIKKLTGGVMLSR-NNDFVVFYRGKDFLSTELAEAL--LERERSMKSLQDEE 500
>gi|242044486|ref|XP_002460114.1| hypothetical protein SORBIDRAFT_02g022940 [Sorghum bicolor]
gi|241923491|gb|EER96635.1| hypothetical protein SORBIDRAFT_02g022940 [Sorghum bicolor]
Length = 962
Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 93/171 (54%), Gaps = 14/171 (8%)
Query: 6 LFHNLRKASALNKFLSLRLKRYEVPKVQ---GPVVKPHEL---TGEERFYFKKMAQKRSN 59
L NL++ L K + +R + KVQ P P +L T EERF F+++ K
Sbjct: 723 LLKNLKRKLILAKTKVAKAERA-LAKVQEFLSPAELPTDLETVTDEERFLFRRIGLKMRA 781
Query: 60 YVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGD 119
++ +GRR VF G + NMH+HWK E VK+ + Q+ A + S G+ I + D
Sbjct: 782 FLMLGRREVFDGTVQNMHLHWKHRELVKIIVRGKSFAQVKHIAISLEAESEGVLISL--D 839
Query: 120 DT-----VIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIA 165
T +IFYRGKNY +P+IM P + L++++AL +S Q E+++ I+
Sbjct: 840 KTSKGYAIIFYRGKNYRRPQIMKPRNLLTRRQALARSIELQRREALKHHIS 890
Score = 43.9 bits (102), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHE- 100
L +E ++++++ + + +GR G+ M W+K K+ K P ++
Sbjct: 551 LRDKEMTTLRRLSRQTAPHFALGRNREHQGLAAAMVKLWEKSAIAKIAIKRGVPNTCNDR 610
Query: 101 FAEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEI 135
AEEI +L+GG+ + + ++FYRG +++ P++
Sbjct: 611 MAEEIKKLTGGVLLSR-NKEYIVFYRGNDFIAPKV 644
>gi|242071513|ref|XP_002451033.1| hypothetical protein SORBIDRAFT_05g022980 [Sorghum bicolor]
gi|241936876|gb|EES10021.1| hypothetical protein SORBIDRAFT_05g022980 [Sorghum bicolor]
Length = 895
Score = 92.8 bits (229), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 74/131 (56%), Gaps = 3/131 (2%)
Query: 38 KPHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQ 97
+P +T EERF F+K+ + ++ +GRRGVF G I NMH+HWK E VK+ K
Sbjct: 585 RPETITDEERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWKYRELVKILVKAKSFAD 644
Query: 98 IHEFAEEIARLSGGIPI---QIIGDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYE 154
+ A + SGGI + ++ ++ +RGKNY +P + P + LSK+KAL +S
Sbjct: 645 VKRIALSLEAESGGILVSVDKVSKGYAIVVFRGKNYRRPSSLRPRNLLSKRKALARSIEL 704
Query: 155 QSLESVRRFIA 165
Q +++ R A
Sbjct: 705 QRHQALSRHFA 715
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 12/126 (9%)
Query: 50 FKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHE-FAEEIARL 108
+++A+ + +GR G+ M W+K KV K E AE+I +L
Sbjct: 386 LRRLARGLPPHFALGRSRQLQGLANAMVKLWEKSSIAKVALKRGVQLTTSERMAEDIKKL 445
Query: 109 SGGIPIQIIGDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRR-----F 163
+GG+ + ++ ++FYRGK+++ E+ + L +++ L KS Q E RR F
Sbjct: 446 TGGVMLSR-NNEFIVFYRGKDFLSSELA---EVLLERERLAKSL--QDEEEARRKAASYF 499
Query: 164 IAMAEK 169
+ AEK
Sbjct: 500 SSSAEK 505
>gi|125553229|gb|EAY98938.1| hypothetical protein OsI_20893 [Oryza sativa Indica Group]
Length = 801
Score = 92.8 bits (229), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 60/146 (41%), Positives = 83/146 (56%), Gaps = 15/146 (10%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
+T EER F+++ + Y+P+G RGVF GVI NMH+HWK E VK+ K + F
Sbjct: 601 ITDEERSVFRRIGLRLKAYLPVGIRGVFDGVIENMHLHWKHREVVKLITKQ----KTLPF 656
Query: 102 AEEIARL----SGGIPIQII---GDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYE 154
EE ARL SGGI + I +IFYRGKNY +P + P + L+K KAL+++
Sbjct: 657 VEETARLLEYESGGILVAIERVPKGYALIFYRGKNYRRPINIRPRNLLTKAKALKRAVAM 716
Query: 155 QSLESVRRFIAMAEKELELYYRHIAL 180
Q E++ + IA ELE R + L
Sbjct: 717 QRHEALSQHIA----ELENNIRQMKL 738
>gi|357441009|ref|XP_003590782.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
gi|355479830|gb|AES61033.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
Length = 838
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 81/137 (59%), Gaps = 3/137 (2%)
Query: 39 PHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQI 98
P +T EERF F+K+ + ++ +GRRGVF G I NMH+HWK E VK+ K + +
Sbjct: 627 PESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWKYRELVKIIVKANNFEHV 686
Query: 99 HEFAEEIARLSGGIPI---QIIGDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQ 155
+ A + SGG+ + ++ +++ YRGK+Y +P ++ P + L+K+KAL +S Q
Sbjct: 687 KKIALALEAESGGVLVSVDKVSKGYSILVYRGKDYQRPSMLRPKNLLTKRKALARSIELQ 746
Query: 156 SLESVRRFIAMAEKELE 172
E++ I+ + ++E
Sbjct: 747 RHEALSSHISTLQSKVE 763
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 63/137 (45%), Gaps = 17/137 (12%)
Query: 29 VPKVQGPV------VKPHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKK 82
VP Q P V+P L +E +++A+ + +GR G+ M W+K
Sbjct: 399 VPGYQPPFRVLPFGVRPT-LGFKEATSLRRIARGLPPHFALGRNRQLQGLAAAMIKLWEK 457
Query: 83 HETVKVFCKPSKPGQIHE-FAEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEIMSPIDT 141
KV K E AEEI +L+GGI I D ++FYRGKN++ P++ +
Sbjct: 458 SSIAKVALKRGVQLTTSERMAEEIKKLTGGI-ILSRNKDFLVFYRGKNFLSPDVTQAL-- 514
Query: 142 LSKKKALEKSKYEQSLE 158
LE+ K +S++
Sbjct: 515 ------LEREKMAKSMQ 525
>gi|297831030|ref|XP_002883397.1| hypothetical protein ARALYDRAFT_898801 [Arabidopsis lyrata subsp.
lyrata]
gi|297329237|gb|EFH59656.1| hypothetical protein ARALYDRAFT_898801 [Arabidopsis lyrata subsp.
lyrata]
Length = 873
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 77/137 (56%), Gaps = 3/137 (2%)
Query: 39 PHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQI 98
P +T EERF F+K+ K ++ +GRRGVF G + NMH+HWK E VK+ K +
Sbjct: 630 PDSITDEERFMFRKLGLKMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKAKTFDGV 689
Query: 99 HEFAEEIARLSGGIPIQI---IGDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQ 155
+ A + SGGI + I +I YRGK+Y +P ++ P + L+K+KAL +S Q
Sbjct: 690 KKVALALEAESGGILVSIDKVTKGYAIIVYRGKDYKRPTMLRPKNLLTKRKALARSIELQ 749
Query: 156 SLESVRRFIAMAEKELE 172
E + + I+ + + E
Sbjct: 750 RREGLLKHISTMQAKAE 766
Score = 40.0 bits (92), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Query: 46 ERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHE-FAEE 104
E +++A+ + +GR G+ M W+K K+ K E AE+
Sbjct: 422 EATALRRLARSIPPHFALGRSRQLQGLATAMVRLWEKSMLAKIAIKRGVQSTTSERMAED 481
Query: 105 IARLSGGIPIQIIGDDTVIFYRGKNYVQPEIMSPI 139
+ +L+GGI + D ++FYRGKN++ E+ +
Sbjct: 482 LKKLTGGILLSR-NKDFLVFYRGKNFLSREVADAL 515
>gi|147852748|emb|CAN79523.1| hypothetical protein VITISV_010525 [Vitis vinifera]
Length = 902
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 78/137 (56%), Gaps = 3/137 (2%)
Query: 39 PHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQI 98
P +T EERF F+K+ + ++ +GRRGVF G + NMH+HWK E VK+ K Q+
Sbjct: 642 PESITDEERFMFRKLGLRMKAFLLLGRRGVFSGTVENMHLHWKYRELVKIIVKAKTFDQV 701
Query: 99 HEFAEEIARLSGGIPIQIIGDD---TVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQ 155
+ A + SGG+ + + ++ +RGK+Y +P + P + L+K+KAL +S Q
Sbjct: 702 KKTALALESESGGVLVSVDKVSKGFAIVVFRGKDYQRPSTLRPKNLLTKRKALARSIELQ 761
Query: 156 SLESVRRFIAMAEKELE 172
E++ I+ ++ +E
Sbjct: 762 RREALYNHISALQRNVE 778
Score = 39.7 bits (91), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
Query: 46 ERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHE-FAEE 104
E +++A+ + +GR G+ + M W++ KV K E AE+
Sbjct: 436 EATALRRLARVLPPHFALGRSRQLEGLAMAMIKLWERSSIAKVALKRGVQLTTSERMAED 495
Query: 105 IARLSGGIPIQIIGDDTVIFYRGKNYVQPEIMSPI 139
I +L+GG+ + D ++FYRGKN++ ++ +
Sbjct: 496 IKKLTGGVLLSR-NKDFLVFYRGKNFLSSDVTEAL 529
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 50 FKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLS 109
+ + + N IG GV V+ + WK E VK+ C+ + + E + R +
Sbjct: 228 LRNLTMRTKNKTKIGGGGVTQAVVDMIREKWKTSEIVKLKCEGAAALNMRRIHEILERKT 287
Query: 110 GGIPIQIIGDDTVIFYRGKNYVQP 133
GG+ I G +V YRG +Y P
Sbjct: 288 GGLVIWRSG-TSVSLYRGVSYEVP 310
>gi|225432918|ref|XP_002280226.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic [Vitis vinifera]
gi|297737163|emb|CBI26364.3| unnamed protein product [Vitis vinifera]
Length = 902
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 78/137 (56%), Gaps = 3/137 (2%)
Query: 39 PHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQI 98
P +T EERF F+K+ + ++ +GRRGVF G + NMH+HWK E VK+ K Q+
Sbjct: 642 PESITDEERFMFRKLGLRMKAFLLLGRRGVFSGTVENMHLHWKYRELVKIIVKAKTFDQV 701
Query: 99 HEFAEEIARLSGGIPIQIIGDD---TVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQ 155
+ A + SGG+ + + ++ +RGK+Y +P + P + L+K+KAL +S Q
Sbjct: 702 KKTALALESESGGVLVSVDKVSKGFAIVVFRGKDYQRPSTLRPKNLLTKRKALARSIELQ 761
Query: 156 SLESVRRFIAMAEKELE 172
E++ I+ ++ +E
Sbjct: 762 RREALYNHISALQRNVE 778
Score = 39.7 bits (91), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
Query: 46 ERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHE-FAEE 104
E +++A+ + +GR G+ + M W++ KV K E AE+
Sbjct: 436 EATALRRLARVLPPHFALGRSRQLEGLAMAMIKLWERSSIAKVALKRGVQLTTSERMAED 495
Query: 105 IARLSGGIPIQIIGDDTVIFYRGKNYVQPEIMSPI 139
I +L+GG+ + D ++FYRGKN++ ++ +
Sbjct: 496 IKKLTGGVLLSR-NKDFLVFYRGKNFLSSDVTEAL 529
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 50 FKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLS 109
+ + + N IG GV V+ + WK E VK+ C+ + + E + R +
Sbjct: 228 LRNLTMRTKNKTKIGGGGVTQAVVDMIREKWKTSEIVKLKCEGAAALNMRRIHEILERKT 287
Query: 110 GGIPIQIIGDDTVIFYRGKNYVQP 133
GG+ I G +V YRG +Y P
Sbjct: 288 GGLVIWRSG-TSVSLYRGVSYEVP 310
>gi|357500379|ref|XP_003620478.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
gi|355495493|gb|AES76696.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
Length = 820
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 83/157 (52%), Gaps = 11/157 (7%)
Query: 34 GPVVKPHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPS 93
GP +T EER F+++ + Y+ +G RGVF GVI NMH+HWK E VK+ K
Sbjct: 613 GPDYDQETITDEERVVFRQIGLRMKAYLQLGIRGVFDGVIENMHLHWKHRELVKLVTKQK 672
Query: 94 KPGQIHEFAEEIARL----SGGIPI---QIIGDDTVIFYRGKNYVQPEIMSPIDTLSKKK 146
F E+ ARL SGGI + ++ + +I+YRGKNY +P + P + L+K K
Sbjct: 673 N----RAFVEDTARLLEYESGGILVAIEKVSKEFAIIYYRGKNYKRPLTLRPRNLLTKAK 728
Query: 147 ALEKSKYEQSLESVRRFIAMAEKELELYYRHIALYGD 183
AL++S E++ I E +E + + L D
Sbjct: 729 ALKRSVAMLRHEALSNHITELETTIEQMKQELGLSDD 765
>gi|297830494|ref|XP_002883129.1| EMB1865 [Arabidopsis lyrata subsp. lyrata]
gi|297328969|gb|EFH59388.1| EMB1865 [Arabidopsis lyrata subsp. lyrata]
Length = 846
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/146 (38%), Positives = 83/146 (56%), Gaps = 11/146 (7%)
Query: 34 GPVVKPHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPS 93
GP ++ EER F+K+ K Y+P+G RGVF GVI NMH+HWK E VK+ K
Sbjct: 645 GPDYDQEVISEEERAMFRKVGLKMKAYLPLGIRGVFDGVIENMHLHWKHRELVKLISKQK 704
Query: 94 KPGQIHEFAEEIARL----SGGIPI---QIIGDDTVIFYRGKNYVQPEIMSPIDTLSKKK 146
F E+ ARL SGG+ + ++ +I+YRGKNY +P + P + L+K K
Sbjct: 705 NLA----FVEDTARLLEYESGGVLVAIEKVPKGFALIYYRGKNYRRPISLRPRNLLTKAK 760
Query: 147 ALEKSKYEQSLESVRRFIAMAEKELE 172
AL++S Q E++ + I+ E+ +E
Sbjct: 761 ALKRSIAMQRHEALSQHISELERTIE 786
>gi|449452735|ref|XP_004144114.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Cucumis sativus]
Length = 846
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 78/137 (56%), Gaps = 7/137 (5%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
+T EER F+K+ Y+ +GRRGV+ G + NMH+HWK E VK+ + Q+
Sbjct: 695 ITDEERLLFRKIGLSMKPYLLLGRRGVYDGTVENMHLHWKFRELVKIIVRGKTLQQVKHV 754
Query: 102 AEEIARLSGGIPIQIIGDDT-----VIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQS 156
A + S G+ I + D T VI YRGKNY +P+ M P + L++++AL +S Q
Sbjct: 755 AISLEAESNGVVISL--DKTTKGYEVIVYRGKNYTRPDAMRPKNMLTRRQALARSIELQR 812
Query: 157 LESVRRFIAMAEKELEL 173
E+++ I E+++EL
Sbjct: 813 REALKHHILDLEEKIEL 829
Score = 43.1 bits (100), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 63/132 (47%), Gaps = 7/132 (5%)
Query: 40 HELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIH 99
H L +E F+++A+K + +GR G+ M W+K K+ K +
Sbjct: 480 HCLRNKEVTIFRRLARKMPPHFALGRNRQLQGLANAMVKLWEKCAIAKIAIKRGVENTRN 539
Query: 100 E-FAEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLE 158
E AEE+ L+GG + + ++FYRG +Y+ P I + L +++ L + +Q +E
Sbjct: 540 ERMAEELRILTGGTLLSR-NKEYIVFYRGNDYLPPTIT---EALKERRKL--ADRQQDVE 593
Query: 159 SVRRFIAMAEKE 170
R +A A E
Sbjct: 594 EQVRQVASAAIE 605
>gi|449529423|ref|XP_004171699.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like, partial [Cucumis sativus]
Length = 789
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 78/137 (56%), Gaps = 7/137 (5%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
+T EER F+K+ Y+ +GRRGV+ G + NMH+HWK E VK+ + Q+
Sbjct: 638 ITDEERLLFRKIGLSMKPYLLLGRRGVYDGTVENMHLHWKFRELVKIIVRGKTLQQVKHV 697
Query: 102 AEEIARLSGGIPIQIIGDDT-----VIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQS 156
A + S G+ I + D T VI YRGKNY +P+ M P + L++++AL +S Q
Sbjct: 698 AISLEAESNGVVISL--DKTTKGYEVIVYRGKNYTRPDAMRPKNMLTRRQALARSIELQR 755
Query: 157 LESVRRFIAMAEKELEL 173
E+++ I E+++EL
Sbjct: 756 REALKHHILDLEEKIEL 772
Score = 43.1 bits (100), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 63/132 (47%), Gaps = 7/132 (5%)
Query: 40 HELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIH 99
H L +E F+++A+K + +GR G+ M W+K K+ K +
Sbjct: 423 HCLRNKEVTIFRRLARKMPPHFALGRNRQLQGLANAMVKLWEKCAIAKIAIKRGVENTRN 482
Query: 100 E-FAEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLE 158
E AEE+ L+GG + + ++FYRG +Y+ P I + L +++ L + +Q +E
Sbjct: 483 ERMAEELRILTGGTLLSR-NKEYIVFYRGNDYLPPTIT---EALKERRKL--ADRQQDVE 536
Query: 159 SVRRFIAMAEKE 170
R +A A E
Sbjct: 537 EQVRQVASAAIE 548
>gi|125549065|gb|EAY94887.1| hypothetical protein OsI_16687 [Oryza sativa Indica Group]
Length = 893
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 90/171 (52%), Gaps = 14/171 (8%)
Query: 6 LFHNLRKASALNKFLSLRLKRYEVPKVQ---GPVVKPHEL---TGEERFYFKKMAQKRSN 59
L NL++ L K ++ ++ + KVQ P P +L T EERF +++ K
Sbjct: 655 LLRNLKRKLILAKTKVIKAEKA-LAKVQEFLSPAELPTDLETVTDEERFLLRRIGLKMKA 713
Query: 60 YVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGD 119
++ +GRR VF G + NMH+HWK E VKV K Q+ A + SGG+ I + D
Sbjct: 714 FLMLGRREVFDGTVQNMHLHWKHRELVKVLVKGKSFPQVKHIAISLEAESGGVLISV--D 771
Query: 120 DT-----VIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIA 165
T +I YRGKNY P+I+ P + LS++KAL +S Q E + I+
Sbjct: 772 KTTKGYAIILYRGKNYKTPQILKPRNLLSRRKALARSIELQRREGLNHHIS 822
Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 55/110 (50%), Gaps = 2/110 (1%)
Query: 27 YEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETV 86
Y+ P P + L +E +++A++ + + +GR G+ + W+K
Sbjct: 468 YKTPFRLLPYMVKSTLRNKEMTALRRLARQTAPHFALGRNREHQGLATAIVKLWEKSSIA 527
Query: 87 KVFCKPSKPGQIHE-FAEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEI 135
K+ K P ++ AEEI +L+GG+ + + ++FYRG +++ P++
Sbjct: 528 KIAIKRGVPNTCNDRMAEEIRKLTGGVLLSR-NKEYIVFYRGNDFITPKV 576
>gi|115478793|ref|NP_001062990.1| Os09g0363100 [Oryza sativa Japonica Group]
gi|48716728|dbj|BAD23409.1| putative CRS1 [Oryza sativa Japonica Group]
gi|50726191|dbj|BAD33710.1| putative CRS1 [Oryza sativa Japonica Group]
gi|113631223|dbj|BAF24904.1| Os09g0363100 [Oryza sativa Japonica Group]
gi|125591023|gb|EAZ31373.1| hypothetical protein OsJ_15500 [Oryza sativa Japonica Group]
Length = 947
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 90/171 (52%), Gaps = 14/171 (8%)
Query: 6 LFHNLRKASALNKFLSLRLKRYEVPKVQ---GPVVKPHEL---TGEERFYFKKMAQKRSN 59
L NL++ L K ++ ++ + KVQ P P +L T EERF +++ K
Sbjct: 710 LLRNLKRKLILAKTKVIKAEKA-LAKVQEFLSPAELPTDLETVTDEERFLLRRIGLKMKA 768
Query: 60 YVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGD 119
++ +GRR VF G + NMH+HWK E VKV K Q+ A + SGG+ I + D
Sbjct: 769 FLMLGRREVFDGTVQNMHLHWKHRELVKVLVKGKSFPQVKHIAISLEAESGGVLISV--D 826
Query: 120 DT-----VIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIA 165
T +I YRGKNY P+I+ P + LS++KAL +S Q E + I+
Sbjct: 827 KTTKGYAIILYRGKNYKTPQILKPRNLLSRRKALARSIELQRREGLNHHIS 877
Score = 44.3 bits (103), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 55/110 (50%), Gaps = 2/110 (1%)
Query: 27 YEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETV 86
Y+ P P + L +E +++A++ + + +GR G+ + W+K
Sbjct: 523 YKTPFRLLPYMVKSTLRNKEMTALRRLARQTAPHFALGRNREHQGLATAIVKLWEKSSIA 582
Query: 87 KVFCKPSKPGQIHE-FAEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEI 135
K+ K P ++ AEEI +L+GG+ + + ++FYRG +++ P++
Sbjct: 583 KIAIKRGVPNTCNDRMAEEIRKLTGGVLLSR-NKEYIVFYRGNDFITPKV 631
>gi|30686898|ref|NP_188947.2| CRM family member 3A [Arabidopsis thaliana]
gi|332643191|gb|AEE76712.1| CRM family member 3A [Arabidopsis thaliana]
Length = 881
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 74/130 (56%), Gaps = 3/130 (2%)
Query: 39 PHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQI 98
P +T EERF F+K+ K ++ +GRRGVF G + NMH+HWK E VK+ K +
Sbjct: 635 PESITDEERFMFRKLGLKMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKAKTFDGV 694
Query: 99 HEFAEEIARLSGGIPIQI---IGDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQ 155
+ A + SGGI + I +I YRG++Y +P ++ P + L+K+KAL +S Q
Sbjct: 695 KKVALALEAESGGILVSIDKVTKGYAIIVYRGQDYKRPTMLRPKNLLTKRKALARSIELQ 754
Query: 156 SLESVRRFIA 165
E + + I+
Sbjct: 755 RREGLLKHIS 764
Score = 40.4 bits (93), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Query: 46 ERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHE-FAEE 104
E +++A+ + +GR G+ M W+K K+ K E AE+
Sbjct: 427 EATALRRLARSIPPHFALGRSRQLQGLATAMVRLWEKSMLAKIAIKRGVQSTTSERMAED 486
Query: 105 IARLSGGIPIQIIGDDTVIFYRGKNYVQPEIMSPI 139
+ +L+GGI + D ++FYRGKN++ E+ +
Sbjct: 487 LKKLTGGIMLSR-NKDFLVFYRGKNFLSREVADAL 520
>gi|9294196|dbj|BAB02098.1| unnamed protein product [Arabidopsis thaliana]
Length = 850
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 74/130 (56%), Gaps = 3/130 (2%)
Query: 39 PHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQI 98
P +T EERF F+K+ K ++ +GRRGVF G + NMH+HWK E VK+ K +
Sbjct: 604 PESITDEERFMFRKLGLKMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKAKTFDGV 663
Query: 99 HEFAEEIARLSGGIPIQI---IGDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQ 155
+ A + SGGI + I +I YRG++Y +P ++ P + L+K+KAL +S Q
Sbjct: 664 KKVALALEAESGGILVSIDKVTKGYAIIVYRGQDYKRPTMLRPKNLLTKRKALARSIELQ 723
Query: 156 SLESVRRFIA 165
E + + I+
Sbjct: 724 RREGLLKHIS 733
Score = 40.4 bits (93), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Query: 46 ERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHE-FAEE 104
E +++A+ + +GR G+ M W+K K+ K E AE+
Sbjct: 396 EATALRRLARSIPPHFALGRSRQLQGLATAMVRLWEKSMLAKIAIKRGVQSTTSERMAED 455
Query: 105 IARLSGGIPIQIIGDDTVIFYRGKNYVQPEIMSPI 139
+ +L+GGI + D ++FYRGKN++ E+ +
Sbjct: 456 LKKLTGGIMLSR-NKDFLVFYRGKNFLSREVADAL 489
>gi|357158137|ref|XP_003578028.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Brachypodium distachyon]
Length = 962
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 79/135 (58%), Gaps = 7/135 (5%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
+T EERF F+++ K ++ +GRR VF G + NMH+HWK E VK+ K Q+
Sbjct: 766 VTDEERFLFRRIGLKMKAFLMLGRREVFAGTVQNMHLHWKHRELVKIIVKGKSFAQVKHI 825
Query: 102 AEEIARLSGGIPIQIIGDDT-----VIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQS 156
A + SGG+ I + D T +I YRGKNY +P+I+ P + L++++A+ +S Q
Sbjct: 826 AISLEAESGGVLISL--DKTTKGYSIIVYRGKNYKRPQILKPRNLLTRRRAMARSIELQR 883
Query: 157 LESVRRFIAMAEKEL 171
E++ I++ +++
Sbjct: 884 REALNHHISILRQKI 898
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 56/110 (50%), Gaps = 2/110 (1%)
Query: 27 YEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETV 86
Y+ P Q P L +E +++A++ + + +GR G+ + W+K V
Sbjct: 538 YKPPFRQLPYRTKLSLRDKEMTALRRLARQTAPHFALGRNREHQGLASAIVKLWEKSTIV 597
Query: 87 KVFCKPSKPGQIHE-FAEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEI 135
K+ K P ++ AEEI +L+GG+ I + +IFYRG +++ P+I
Sbjct: 598 KIAIKRGVPNTCNDRMAEEIKKLTGGVLISR-NKEYIIFYRGNDFMTPKI 646
>gi|30678323|ref|NP_186786.2| CRM family member 2 [Arabidopsis thaliana]
gi|22531018|gb|AAM97013.1| unknown protein [Arabidopsis thaliana]
gi|37202002|gb|AAQ89616.1| At3g01370 [Arabidopsis thaliana]
gi|332640136|gb|AEE73657.1| CRM family member 2 [Arabidopsis thaliana]
Length = 1011
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 79/140 (56%), Gaps = 3/140 (2%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
+T +E++ +K+ K ++ +GRRGVF G I NMH+HWK E VK+ C H+
Sbjct: 579 ITNDEKYMLRKIGLKMKPFLLLGRRGVFDGTIENMHLHWKYRELVKIICNEYSIEAAHKV 638
Query: 102 AEEIARLSGGI--PIQIIGDD-TVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLE 158
AE + SGGI ++++ +I YRGKNY +P+ + P LSK++AL++S Q +
Sbjct: 639 AEILEAESGGILVAVEMVSKGYAIIVYRGKNYERPQCLRPQTLLSKREALKRSVEAQRRK 698
Query: 159 SVRRFIAMAEKELELYYRHI 178
S++ + +E R +
Sbjct: 699 SLKLHVLKLSNNIEELNRQL 718
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 67/146 (45%), Gaps = 7/146 (4%)
Query: 23 RLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKK 82
R K +VP + + P EL + + + + + IG+ G+ G++ +H W+
Sbjct: 152 RKKEEKVPSLAELTLPPAELR-----RLRTVGIRLTKKLKIGKAGITEGIVNGIHERWRT 206
Query: 83 HETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEIMSPIDTL 142
E VK+FC+ + + + +GG+ I G ++ YRG NY P +S D L
Sbjct: 207 TEVVKIFCEDISRMNMKRTHDVLETKTGGLVIWRSGSK-ILLYRGVNYQYPYFVSDRD-L 264
Query: 143 SKKKALEKSKYEQSLESVRRFIAMAE 168
+ + A S +Q + R ++AE
Sbjct: 265 AHEAASGASSMDQGVVDSREKQSIAE 290
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 2/100 (2%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
LT +E +++ + + +GR G+ + + W+K E K+ K E
Sbjct: 378 LTDDEMTTIRRLGRPLPCHFALGRNRNLQGLAVAIVKLWEKCELAKIAVKRGVQNTNSEL 437
Query: 102 -AEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEIMSPID 140
AEE+ L+GG I D ++ YRGK+++ + S I+
Sbjct: 438 MAEELKWLTGGTLISR-DKDFIVLYRGKDFLPSAVSSAIE 476
>gi|6692258|gb|AAF24608.1|AC010870_1 unknown protein [Arabidopsis thaliana]
Length = 1020
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 79/140 (56%), Gaps = 3/140 (2%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
+T +E++ +K+ K ++ +GRRGVF G I NMH+HWK E VK+ C H+
Sbjct: 588 ITNDEKYMLRKIGLKMKPFLLLGRRGVFDGTIENMHLHWKYRELVKIICNEYSIEAAHKV 647
Query: 102 AEEIARLSGGI--PIQIIGDD-TVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLE 158
AE + SGGI ++++ +I YRGKNY +P+ + P LSK++AL++S Q +
Sbjct: 648 AEILEAESGGILVAVEMVSKGYAIIVYRGKNYERPQCLRPQTLLSKREALKRSVEAQRRK 707
Query: 159 SVRRFIAMAEKELELYYRHI 178
S++ + +E R +
Sbjct: 708 SLKLHVLKLSNNIEELNRQL 727
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 67/146 (45%), Gaps = 7/146 (4%)
Query: 23 RLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKK 82
R K +VP + + P EL + + + + + IG+ G+ G++ +H W+
Sbjct: 152 RKKEEKVPSLAELTLPPAELR-----RLRTVGIRLTKKLKIGKAGITEGIVNGIHERWRT 206
Query: 83 HETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEIMSPIDTL 142
E VK+FC+ + + + +GG+ I G ++ YRG NY P +S D L
Sbjct: 207 TEVVKIFCEDISRMNMKRTHDVLETKTGGLVIWRSGSK-ILLYRGVNYQYPYFVSDRD-L 264
Query: 143 SKKKALEKSKYEQSLESVRRFIAMAE 168
+ + A S +Q + R ++AE
Sbjct: 265 AHEAASGASSMDQGVVDSREKQSIAE 290
>gi|255582755|ref|XP_002532154.1| conserved hypothetical protein [Ricinus communis]
gi|223528164|gb|EEF30228.1| conserved hypothetical protein [Ricinus communis]
Length = 745
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 74/125 (59%), Gaps = 11/125 (8%)
Query: 34 GPVVKPHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPS 93
GP +T EER F+++ + Y+P+G RGVF GVI NMH+HWK E VK+ K
Sbjct: 612 GPDYDQETITDEERAVFRRIGLRMKAYLPLGIRGVFDGVIENMHLHWKHRELVKLISK-- 669
Query: 94 KPGQIHEFAEEIARL----SGGIPI---QIIGDDTVIFYRGKNYVQPEIMSPIDTLSKKK 146
+ FAE+ ARL SGGI + ++ +I+YRGKNY +P + P + L+K K
Sbjct: 670 --QKTLAFAEDTARLLEYESGGILVAIERVPKGFALIYYRGKNYRRPINLRPRNLLTKAK 727
Query: 147 ALEKS 151
AL++S
Sbjct: 728 ALKRS 732
>gi|413946391|gb|AFW79040.1| hypothetical protein ZEAMMB73_840751 [Zea mays]
Length = 266
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 77/134 (57%), Gaps = 3/134 (2%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
+T EE+ F+++ + Y+P+G RGVF GVI NMH+HWK E VK+ K + E
Sbjct: 2 ITDEEKSVFRRIGLRLKAYLPLGVRGVFDGVIENMHLHWKHREVVKLISKQKTLSFVEET 61
Query: 102 AEEIARLSGGIPIQII---GDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLE 158
A +A SGGI + I +IFYRGKNY +P + P + L+K KAL+++ Q E
Sbjct: 62 ARLLAYESGGILVAIERVPKGYALIFYRGKNYRRPINIRPRNLLTKAKALKRAVAMQRHE 121
Query: 159 SVRRFIAMAEKELE 172
++ + I E ++
Sbjct: 122 ALSQHIDQLESNIK 135
>gi|449515235|ref|XP_004164655.1| PREDICTED: LOW QUALITY PROTEIN: chloroplastic group IIA intron
splicing facilitator CRS1, chloroplastic-like [Cucumis
sativus]
Length = 1053
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 86/155 (55%), Gaps = 6/155 (3%)
Query: 10 LRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVPIGRRGVF 69
+RK + +FL+ K E K+Q P + +T EER+ KK+ + ++ +GRRGVF
Sbjct: 572 IRKKAKAEEFLA---KLEEEEKLQQPEIDKEGITVEERYMLKKVGLRMKPFLLLGRRGVF 628
Query: 70 GGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPI---QIIGDDTVIFYR 126
G + NMH+HWK E VK+ +H+ A + SGGI + ++ +I +R
Sbjct: 629 DGTVENMHLHWKYRELVKIITNERSFKTVHDVARTLEAESGGILVAVERVKRSFAIIIFR 688
Query: 127 GKNYVQPEIMSPIDTLSKKKALEKSKYEQSLESVR 161
GKNY +P + P L+KK+AL++S Q +S++
Sbjct: 689 GKNYKRPSRLRPESLLNKKEALKRSIEAQRRKSLK 723
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 5/128 (3%)
Query: 7 FHNLR-KASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVPIGR 65
FH LR + K +R K+ E + P + LT EE + + + + +G+
Sbjct: 151 FHELRGEVQKWKKRDGVREKKREE---RAPSLAELSLTEEELGRLRTIGIRLKKKLNVGK 207
Query: 66 RGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTVIFY 125
G+ G++ +H W++ E VK+ C+ + + + R +GGI + G +I Y
Sbjct: 208 AGITEGIVNTIHEFWRRSEVVKIACEDLCRLNMKRTHDLLERKTGGIVVWRSGSK-IILY 266
Query: 126 RGKNYVQP 133
RG NY+ P
Sbjct: 267 RGPNYIYP 274
>gi|413946392|gb|AFW79041.1| hypothetical protein ZEAMMB73_840751 [Zea mays]
Length = 197
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 76/133 (57%), Gaps = 3/133 (2%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
+T EE+ F+++ + Y+P+G RGVF GVI NMH+HWK E VK+ K + E
Sbjct: 2 ITDEEKSVFRRIGLRLKAYLPLGVRGVFDGVIENMHLHWKHREVVKLISKQKTLSFVEET 61
Query: 102 AEEIARLSGGIPIQII---GDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLE 158
A +A SGGI + I +IFYRGKNY +P + P + L+K KAL+++ Q E
Sbjct: 62 ARLLAYESGGILVAIERVPKGYALIFYRGKNYRRPINIRPRNLLTKAKALKRAVAMQRHE 121
Query: 159 SVRRFIAMAEKEL 171
++ + I E +
Sbjct: 122 ALSQHIDQLESNI 134
>gi|357496109|ref|XP_003618343.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
gi|355493358|gb|AES74561.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
Length = 1096
Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 76/133 (57%), Gaps = 3/133 (2%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
+T EER+ +++ K ++ +GRRGVF G + NMH+HWK E VK+ C H+
Sbjct: 557 ITEEERYMLRRIGLKMKPFLLLGRRGVFDGTVENMHLHWKYRELVKIICNQESVEYAHQT 616
Query: 102 AEEIARLSGGIPIQIIGDD---TVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLE 158
A + SGGI + + + +I YRGKNY +P+ + P L+KK+AL++S Q E
Sbjct: 617 ARTLEAESGGILVAVERVNKGYAIIVYRGKNYSRPDSLRPRTLLNKKQALKRSIEAQRRE 676
Query: 159 SVRRFIAMAEKEL 171
+++ + +K +
Sbjct: 677 ALKLHVLKLDKNI 689
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 1/103 (0%)
Query: 35 PVVKPHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSK 94
P + LT E +++ + + +G+ GV G++ +H W++ E V+V C+
Sbjct: 144 PTLAELSLTDGEILRLRELGYQMKQKIKVGKAGVTEGIVNGIHERWRRSEVVRVVCEDLC 203
Query: 95 PGQIHEFAEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEIMS 137
+ + + R +GG+ + G +I YRG +Y P +S
Sbjct: 204 RINMKRTHDILERKTGGLVVWRSG-SKIILYRGIDYKYPYFLS 245
Score = 37.7 bits (86), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 2/99 (2%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPS-KPGQIHE 100
LT +E K++ + + +GR GV + W++ E V + K + +
Sbjct: 369 LTDDEMTTLKRLGRTLPCHFALGRNWKLQGVAAAIIKFWERCEIVNIAVKRGVQNTSNRK 428
Query: 101 FAEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEIMSPI 139
AEEI L+GG + + ++ YRGK+++ + S I
Sbjct: 429 MAEEIKYLTGGTLLS-RNKEVIVIYRGKDFLPAAVSSAI 466
>gi|449432614|ref|XP_004134094.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Cucumis sativus]
gi|449504099|ref|XP_004162252.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Cucumis sativus]
Length = 874
Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 76/132 (57%), Gaps = 3/132 (2%)
Query: 37 VKPHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPG 96
+P +T EERF F+K+ + ++ +GRR VF G + NMH+HWK E VK+ K +
Sbjct: 652 AEPDSITEEERFMFRKLGLRMKAFLLLGRREVFDGTVENMHLHWKYRELVKIMIKANSFD 711
Query: 97 QIHEFAEEIARLSGGIPIQIIGDD---TVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKY 153
+ A ++ SGG+ + I +I YRGK+Y +P ++ P + L+K+KAL +S
Sbjct: 712 HVKNIALQLEAESGGVLVSIDKVSKGYAIIVYRGKDYKRPSLLRPKNLLTKRKALARSIE 771
Query: 154 EQSLESVRRFIA 165
Q E++ + I+
Sbjct: 772 LQRHEALLKHIS 783
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 62/124 (50%), Gaps = 8/124 (6%)
Query: 50 FKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHE-FAEEIARL 108
K++A++ + +GR G+ + M W++ K+ K E AEEI +L
Sbjct: 453 LKRLARRLPPHFALGRNRQLQGLAIAMTKLWERSLIAKIALKRGVQLTTSERMAEEIKKL 512
Query: 109 SGGIPIQIIGDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKS---KYEQSLESVRRFIA 165
+GG+ + D ++FYRGK+++ PE+ + L +++ L KS K EQ+ F+
Sbjct: 513 TGGMLLSR-NKDFLVFYRGKSFLSPEV---TEALLERERLAKSLQDKEEQARLKASAFVV 568
Query: 166 MAEK 169
EK
Sbjct: 569 PIEK 572
>gi|297738658|emb|CBI27903.3| unnamed protein product [Vitis vinifera]
Length = 881
Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 78/137 (56%), Gaps = 7/137 (5%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
L+ EERF F+K+ ++ +G RG+F G + NMH+HWK E VK+ K Q+
Sbjct: 680 LSDEERFLFRKIGLSMKPFLLLGTRGIFDGTVENMHLHWKYRELVKIIVKGKNFAQVKHI 739
Query: 102 AEEIARLSGGIPIQIIGDDT-----VIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQS 156
A + SGG+ + + D T +I YRGKNY +P + P + L+K++AL +S Q
Sbjct: 740 AISLEAESGGVLVSV--DRTPKGYAIIVYRGKNYQRPHALRPKNLLTKRQALARSIELQR 797
Query: 157 LESVRRFIAMAEKELEL 173
E+++ I+ E+ ++L
Sbjct: 798 HEALKHHISDLEERIKL 814
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 57/118 (48%), Gaps = 2/118 (1%)
Query: 40 HELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIH 99
H L E + +++A+ + +GR G+ + M W++ K+ K +
Sbjct: 465 HCLRNREMTFIRRLARTMPPHFALGRSRELQGLAMAMVKLWERSAIAKIAIKRGVQNTCN 524
Query: 100 E-FAEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQS 156
+ AEE+ L+GG + D ++FYRG +++ P +M + K + L++ + EQ+
Sbjct: 525 DRMAEELKNLTGGTLVSR-NKDYIVFYRGNDFLPPHVMEALKERRKLRDLQQDEEEQA 581
>gi|414885161|tpg|DAA61175.1| TPA: hypothetical protein ZEAMMB73_652631 [Zea mays]
Length = 964
Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 75/129 (58%), Gaps = 7/129 (5%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
+T EERF F+++ K ++ +GRR VF G + NMH+HWK E VK+ + Q
Sbjct: 768 VTDEERFLFRRIGLKMRAFLMLGRREVFDGTVQNMHLHWKHRELVKIVVRGKSFAQAKHI 827
Query: 102 AEEIARLSGGIPIQIIGDDT-----VIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQS 156
A + S G+ I + D T +IFYRGKNY +P+IM P + L++++AL +S Q
Sbjct: 828 AISLEAESEGVLISL--DKTTKGYVIIFYRGKNYRRPQIMKPRNLLTRRQALARSIELQR 885
Query: 157 LESVRRFIA 165
E+++ I+
Sbjct: 886 REALKHHIS 894
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 64/127 (50%), Gaps = 7/127 (5%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHE- 100
L +E +++A++ + + +GR G+ M W+K K+ K P ++
Sbjct: 555 LRDKEMTTLRRLARQTAPHFALGRNREHQGLAAAMVKLWEKSAIAKIAIKRGIPNTCNDR 614
Query: 101 FAEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLESV 160
AEEI +L+GG+ + + ++FYRG +++ P++ L +K+ E++ +Q E +
Sbjct: 615 MAEEIKKLTGGVLLSR-NKEFIVFYRGNDFIAPKVRQ---VLVEKQ--EQAITQQDEEEL 668
Query: 161 RRFIAMA 167
R A A
Sbjct: 669 ARLKASA 675
>gi|356573408|ref|XP_003554853.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 1027
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 101/196 (51%), Gaps = 12/196 (6%)
Query: 10 LRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVPIGRRGVF 69
L + + K LS L+ E P Q + +T EE++ +++ K S ++ +GRRGVF
Sbjct: 514 LEEKAKAEKLLS-ELENAESP--QEEEINKEGITEEEKYMLRRIGLKMSPFLLLGRRGVF 570
Query: 70 GGVILNMHMHWKKHETVKVFC-KPSKPGQIHEFAEEIARLSGGIPIQIIGDD---TVIFY 125
G + NMH+HWK E VK+ C K + + A+ + SGGI I + + +I Y
Sbjct: 571 DGTVENMHLHWKYRELVKIICNKQMSLEDVQQIAQTLEAESGGILIAVERVNKSYAIIVY 630
Query: 126 RGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKELELYYRHIALYGDPN 185
RGKNY +P + P L+KK+AL++S Q ES++ + ++ + +A + N
Sbjct: 631 RGKNYSRPASLRPRTLLNKKQALKRSIEAQRCESLKLHVLKLDRNINELKHQMAKDMEAN 690
Query: 186 NR-----NPMSIMDNP 196
++ N +I + P
Sbjct: 691 SKQTSVDNQQAIQEQP 706
Score = 41.2 bits (95), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 63 IGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTV 122
+G+ G+ G++ +H W+ E V++ C+ + + + R +GG+ + G +
Sbjct: 151 VGKAGLTEGIVNGIHERWRSFEVVRIVCEDLSRFNMKRTHDLLERKTGGLVVWRSG-SKI 209
Query: 123 IFYRGKNYVQPEIMS 137
I YRG +Y P +S
Sbjct: 210 ILYRGTDYKYPYFLS 224
Score = 40.4 bits (93), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 53/107 (49%), Gaps = 7/107 (6%)
Query: 37 VKPHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPG 96
VKP +LT +E +++ + + +GR G+ + W++ E VK+ K
Sbjct: 345 VKP-KLTDDEMTTMRRLGKHLPCHFALGRNKKLHGLAAAIIKLWERCEIVKIAIKRGVLN 403
Query: 97 QIHEF-AEEIARLSGGIPIQIIGDDT--VIFYRGKNYVQPEIMSPID 140
E AEEI L+GG +I D ++FYRGK+++ + S I+
Sbjct: 404 TNGELMAEEIKYLTGGT---LIARDKEFIVFYRGKDFLPTAVSSAIE 447
>gi|359484307|ref|XP_002279505.2| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Vitis vinifera]
Length = 884
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 78/137 (56%), Gaps = 7/137 (5%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
L+ EERF F+K+ ++ +G RG+F G + NMH+HWK E VK+ K Q+
Sbjct: 683 LSDEERFLFRKIGLSMKPFLLLGTRGIFDGTVENMHLHWKYRELVKIIVKGKNFAQVKHI 742
Query: 102 AEEIARLSGGIPIQIIGDDT-----VIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQS 156
A + SGG+ + + D T +I YRGKNY +P + P + L+K++AL +S Q
Sbjct: 743 AISLEAESGGVLVSV--DRTPKGYAIIVYRGKNYQRPHALRPKNLLTKRQALARSIELQR 800
Query: 157 LESVRRFIAMAEKELEL 173
E+++ I+ E+ ++L
Sbjct: 801 HEALKHHISDLEERIKL 817
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 57/118 (48%), Gaps = 2/118 (1%)
Query: 40 HELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIH 99
H L E + +++A+ + +GR G+ + M W++ K+ K +
Sbjct: 468 HCLRNREMTFIRRLARTMPPHFALGRSRELQGLAMAMVKLWERSAIAKIAIKRGVQNTCN 527
Query: 100 E-FAEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQS 156
+ AEE+ L+GG + D ++FYRG +++ P +M + K + L++ + EQ+
Sbjct: 528 DRMAEELKNLTGGTLVSR-NKDYIVFYRGNDFLPPHVMEALKERRKLRDLQQDEEEQA 584
>gi|242076096|ref|XP_002447984.1| hypothetical protein SORBIDRAFT_06g019250 [Sorghum bicolor]
gi|241939167|gb|EES12312.1| hypothetical protein SORBIDRAFT_06g019250 [Sorghum bicolor]
Length = 800
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 75/134 (55%), Gaps = 3/134 (2%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
++ +ER+ +K+ K ++ +GRRGVF G I NMH+HWK E VK+ CK + +
Sbjct: 633 ISEDERYMLRKVGLKMKQFLLLGRRGVFDGTIENMHLHWKYRELVKIICKEHRLEDVEYA 692
Query: 102 AEEIARLSGGIPI---QIIGDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLE 158
A + SGGI + ++ +I YRGKNY +P + P LSK+ AL++S Q +
Sbjct: 693 ARTLEAESGGILVAVEKVSKGHAIIVYRGKNYQRPSKLRPKTLLSKRDALKRSVENQRCK 752
Query: 159 SVRRFIAMAEKELE 172
S++ + K ++
Sbjct: 753 SLKVHVLKLSKNID 766
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 63 IGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTV 122
+G+ G+ G++ +H W+ E VK+ C+ + E + R +GG+ I G T+
Sbjct: 166 VGKAGITEGIVNGIHERWRNAEVVKLRCEDVWAMNMRRTHEILERKTGGLVIWRSG-STI 224
Query: 123 IFYRGKNYVQP 133
I YRG NY P
Sbjct: 225 ILYRGTNYKYP 235
Score = 43.5 bits (101), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 2/107 (1%)
Query: 35 PVVKPHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSK 94
P P +LT E +++A + +GR G+ +M W++ E K+ K
Sbjct: 431 PSGVPPKLTDREMTILRRLAHPLPFHYALGRSSNLQGLAASMIKLWERCEVAKIALKRDA 490
Query: 95 PGQIHEF-AEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEIMSPID 140
E EEI L+GG + ++++FYRGK+++ P + I+
Sbjct: 491 HNTDSELITEEIKDLTGGTLLS-RDKESIVFYRGKDFLPPAVSLAIE 536
>gi|218194999|gb|EEC77426.1| hypothetical protein OsI_16218 [Oryza sativa Indica Group]
Length = 818
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 75/134 (55%), Gaps = 3/134 (2%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
++ EER+ +K+ K +++ +GRRGVF G + NMH+HWK E VK+ CK +
Sbjct: 386 ISEEERYMLRKVGLKMKSFLLLGRRGVFDGTVENMHLHWKYRELVKIICKEHNIKDVEYA 445
Query: 102 AEEIARLSGGIPI---QIIGDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLE 158
A + SGGI + ++ +I YRGKNY +P + P L+KK AL++S Q +
Sbjct: 446 ARTLEAESGGILVAVERVSKAHAIIIYRGKNYQRPSTLRPKSLLNKKDALKRSVEYQRYK 505
Query: 159 SVRRFIAMAEKELE 172
S++ + K ++
Sbjct: 506 SLKLHVLNLSKNID 519
>gi|125590660|gb|EAZ31010.1| hypothetical protein OsJ_15093 [Oryza sativa Japonica Group]
Length = 818
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 75/134 (55%), Gaps = 3/134 (2%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
++ EER+ +K+ K +++ +GRRGVF G + NMH+HWK E VK+ CK +
Sbjct: 386 ISEEERYMLRKVGLKMKSFLLLGRRGVFDGTVENMHLHWKYRELVKIICKEHNIKDVEYA 445
Query: 102 AEEIARLSGGIPI---QIIGDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLE 158
A + SGGI + ++ +I YRGKNY +P + P L+KK AL++S Q +
Sbjct: 446 ARTLEAESGGILVAVERVSKAHAIIIYRGKNYQRPSTLRPKSLLNKKDALKRSVEYQRYK 505
Query: 159 SVRRFIAMAEKELE 172
S++ + K ++
Sbjct: 506 SLKLHVLNLSKNID 519
>gi|449459492|ref|XP_004147480.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Cucumis sativus]
Length = 1032
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 85/155 (54%), Gaps = 6/155 (3%)
Query: 10 LRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVPIGRRGVF 69
L K + +FL+ K E K+Q P + +T EER+ KK+ + ++ +GRRGVF
Sbjct: 551 LEKKAKAEEFLA---KLEEEEKLQQPEIDKEGITVEERYMLKKVGLRMKPFLLLGRRGVF 607
Query: 70 GGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPI---QIIGDDTVIFYR 126
G + NMH+HWK E VK+ +H+ A + SGGI + ++ +I +R
Sbjct: 608 DGTVENMHLHWKYRELVKIITNERSFKTVHDVARTLEAESGGILVAVERVKRSFAIIIFR 667
Query: 127 GKNYVQPEIMSPIDTLSKKKALEKSKYEQSLESVR 161
GKNY +P + P L+KK+AL++S Q +S++
Sbjct: 668 GKNYKRPSRLRPESLLNKKEALKRSIEAQRRKSLK 702
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 61/128 (47%), Gaps = 5/128 (3%)
Query: 7 FHNLR-KASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVPIGR 65
FH LR + K +R K+ E + P + LT EE + + + + +G+
Sbjct: 131 FHELRGEVQKWKKRDGVREKKREE---RAPSLAELSLTEEELGRLRTIGIRLKKKLNVGK 187
Query: 66 RGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTVIFY 125
G+ G++ +H +W++ E VK+ C+ + + + R +GGI + G +I Y
Sbjct: 188 AGITEGIVNTIHEYWRRSEVVKIACEDLCRLNMKRTHDLLERKTGGIVVWRSGSK-IILY 246
Query: 126 RGKNYVQP 133
RG NY+ P
Sbjct: 247 RGPNYIYP 254
>gi|116310121|emb|CAH67138.1| OSIGBa0130P02.2 [Oryza sativa Indica Group]
Length = 1048
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 75/134 (55%), Gaps = 3/134 (2%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
++ EER+ +K+ K +++ +GRRGVF G + NMH+HWK E VK+ CK +
Sbjct: 616 ISEEERYMLRKVGLKMKSFLLLGRRGVFDGTVENMHLHWKYRELVKIICKEHNIKDVEYA 675
Query: 102 AEEIARLSGGIPI---QIIGDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLE 158
A + SGGI + ++ +I YRGKNY +P + P L+KK AL++S Q +
Sbjct: 676 ARTLEAESGGILVAVERVSKAHAIIIYRGKNYQRPSTLRPKSLLNKKDALKRSVEYQRYK 735
Query: 159 SVRRFIAMAEKELE 172
S++ + K ++
Sbjct: 736 SLKLHVLNLSKNID 749
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 59 NYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIG 118
N + +G+ GV G++ +H W+ E VK+ C + E + R +GG+ I G
Sbjct: 158 NRLKVGKAGVTEGIVNGIHERWRNAELVKIRCDDVSAMNMKRTHEILERKTGGLVIWRSG 217
Query: 119 DDTVIFYRGKNYVQP 133
T+I YRG +Y P
Sbjct: 218 -STIILYRGTDYKYP 231
Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
Query: 35 PVVKPHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSK 94
P P LT E +++A+ + +GR G+ +M W++ E KV K
Sbjct: 408 PSGVPPRLTDREMTILRRLARPLPYHYALGRSSNLQGLAASMIKLWERCEVAKVAIKRGA 467
Query: 95 PGQIHEF-AEEIARLSGGIPIQIIGDDTVIFYRGKNYV 131
+ +E++ L+GG + +++++FYRGK+++
Sbjct: 468 ENIDSDLISEKLKGLTGGTLLS-RDNESIVFYRGKDFL 504
>gi|297602873|ref|NP_001053020.2| Os04g0464800 [Oryza sativa Japonica Group]
gi|255675534|dbj|BAF14934.2| Os04g0464800 [Oryza sativa Japonica Group]
Length = 1042
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 75/134 (55%), Gaps = 3/134 (2%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
++ EER+ +K+ K +++ +GRRGVF G + NMH+HWK E VK+ CK +
Sbjct: 580 ISEEERYMLRKVGLKMKSFLLLGRRGVFDGTVENMHLHWKYRELVKIICKEHNIKDVEYA 639
Query: 102 AEEIARLSGGIPI---QIIGDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLE 158
A + SGGI + ++ +I YRGKNY +P + P L+KK AL++S Q +
Sbjct: 640 ARTLEAESGGILVAVERVSKAHAIIIYRGKNYQRPSTLRPKSLLNKKDALKRSVEYQRYK 699
Query: 159 SVRRFIAMAEKELE 172
S++ + K ++
Sbjct: 700 SLKLHVLNLSKNID 713
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 59 NYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIG 118
N + +G+ GV G++ +H W+ E VK+ C + E + R +GG+ I G
Sbjct: 158 NRLKVGKAGVTEGIVNGIHERWRNAELVKIRCDDVSAMNMKRTHEILERKTGGLVIWRSG 217
Query: 119 DDTVIFYRGKNYVQP 133
T+I YRG +Y P
Sbjct: 218 -STIILYRGTDYKYP 231
>gi|154986383|gb|ABS89145.1| CFM2 [Zea mays]
Length = 942
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 77/138 (55%), Gaps = 4/138 (2%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
++ +ER+ +K+ K ++ +GRRGVF G I NMH+HWK E VK+ CK + +
Sbjct: 531 ISEDERYMLRKVGLKMKQFLLLGRRGVFDGTIENMHLHWKYRELVKIICKEHRLEDVEYA 590
Query: 102 AEEIARLSGGIPI---QIIGDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLE 158
A + SGGI + ++ +I YRGKNY +P + P LSK+ AL++S Q +
Sbjct: 591 ARTLEAESGGILVAVEKVSKGHAIIVYRGKNYKRPSKLRPKTLLSKRDALKRSLENQRCK 650
Query: 159 SVRRFIAMAEKELELYYR 176
S++ + K ++ Y R
Sbjct: 651 SLKVHVLKLSKNID-YLR 667
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 63 IGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTV 122
+G+ G+ G++ +H W+ E VK+ C+ + E + R +GG+ I G T+
Sbjct: 67 VGKAGITEGIVNGIHERWRNAEVVKLRCEDVWAMNMRRTHEILERKTGGLVIWRSG-STI 125
Query: 123 IFYRGKNYVQP 133
I YRG NY P
Sbjct: 126 ILYRGTNYTYP 136
Score = 43.5 bits (101), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 2/107 (1%)
Query: 35 PVVKPHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSK 94
P P +LT E +++A + +GR G+ +M W++ E K+ K
Sbjct: 329 PSGVPPKLTDREMTILRRLAHALPFHYALGRSSNLQGLAASMIKLWERCEVAKIALKRDA 388
Query: 95 PGQIHEF-AEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEIMSPID 140
E EE+ L+GG + ++++FYRGK+++ P + I+
Sbjct: 389 HNTDSELITEEVKELTGGTLLS-RDKESIVFYRGKDFLPPAVSLAIE 434
>gi|21741981|emb|CAD41031.1| OSJNBa0060P14.12 [Oryza sativa Japonica Group]
gi|32492164|emb|CAE04823.1| OSJNBb0048E02.3 [Oryza sativa Japonica Group]
Length = 1012
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 75/134 (55%), Gaps = 3/134 (2%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
++ EER+ +K+ K +++ +GRRGVF G + NMH+HWK E VK+ CK +
Sbjct: 580 ISEEERYMLRKVGLKMKSFLLLGRRGVFDGTVENMHLHWKYRELVKIICKEHNIKDVEYA 639
Query: 102 AEEIARLSGGIPI---QIIGDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLE 158
A + SGGI + ++ +I YRGKNY +P + P L+KK AL++S Q +
Sbjct: 640 ARTLEAESGGILVAVERVSKAHAIIIYRGKNYQRPSTLRPKSLLNKKDALKRSVEYQRYK 699
Query: 159 SVRRFIAMAEKELE 172
S++ + K ++
Sbjct: 700 SLKLHVLNLSKNID 713
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 59 NYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIG 118
N + +G+ GV G++ +H W+ E VK+ C + E + R +GG+ I G
Sbjct: 158 NRLKVGKAGVTEGIVNGIHERWRNAELVKIRCDDVSAMNMKRTHEILERKTGGLVIWRSG 217
Query: 119 DDTVIFYRGKNYVQP 133
T+I YRG +Y P
Sbjct: 218 -STIILYRGTDYKYP 231
>gi|413918579|gb|AFW58511.1| CFM2 [Zea mays]
Length = 1039
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 77/138 (55%), Gaps = 4/138 (2%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
++ +ER+ +K+ K ++ +GRRGVF G I NMH+HWK E VK+ CK + +
Sbjct: 628 ISEDERYMLRKVGLKMKQFLLLGRRGVFDGTIENMHLHWKYRELVKIICKEHRLEDVEYA 687
Query: 102 AEEIARLSGGIPI---QIIGDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLE 158
A + SGGI + ++ +I YRGKNY +P + P LSK+ AL++S Q +
Sbjct: 688 ARTLEAESGGILVAVEKVSKGHAIIVYRGKNYKRPSKLRPKTLLSKRDALKRSLENQRCK 747
Query: 159 SVRRFIAMAEKELELYYR 176
S++ + K ++ Y R
Sbjct: 748 SLKVHVLKLSKNID-YLR 764
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 63 IGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTV 122
+G+ G+ G++ +H W+ E VK+ C+ + E + R +GG+ I G T+
Sbjct: 164 VGKAGITEGIVNGIHERWRNAEVVKLRCEDVWAMNMRRTHEILERKTGGLVIWRSG-STI 222
Query: 123 IFYRGKNYVQP 133
I YRG NY P
Sbjct: 223 ILYRGTNYTYP 233
Score = 43.5 bits (101), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 2/107 (1%)
Query: 35 PVVKPHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSK 94
P P +LT E +++A + +GR G+ +M W++ E K+ K
Sbjct: 426 PSGVPPKLTDREMTILRRLAHALPFHYALGRSSNLQGLAASMIKLWERCEVAKIALKRDA 485
Query: 95 PGQIHEF-AEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEIMSPID 140
E EE+ L+GG + ++++FYRGK+++ P + I+
Sbjct: 486 HNTDSELITEEVKELTGGTLLS-RDKESIVFYRGKDFLPPAVSLAIE 531
>gi|326497411|dbj|BAK05795.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1070
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 88/167 (52%), Gaps = 5/167 (2%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
++ EER+ +K+ + ++ +GRRGVF G I NMH+HWK E VK+ CK +
Sbjct: 650 ISEEERYMLRKVGLQMKPFLLLGRRGVFDGTIENMHLHWKYRELVKIICKEHSMEDVTYA 709
Query: 102 AEEIARLSGGIPI---QIIGDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLE 158
A + SGGI + ++ +I YRGKNY +P + P L+KK AL++S Q +
Sbjct: 710 ARTLEAESGGILVAVERVSKGHAIIMYRGKNYQRPSSLRPKSLLNKKDALKRSVELQRRK 769
Query: 159 SVRRFIAMAEKELELYYRHIALYGDPNNRNPMSIMDNPSKVTKESWK 205
S++ + K ++ Y R + N+ + DN S+ + E+ K
Sbjct: 770 SLKLHVLNLSKNID-YLRGQLMNSGHENKGMHDLCDN-SRTSGETSK 814
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 63 IGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTV 122
+G+ GV G++ +H W+ E VK+ C + E + R +GG+ I G T+
Sbjct: 163 VGKPGVTEGIVNGIHERWRNAELVKIRCDDISAMNMRRTHEVLERKTGGLVIWRSG-STI 221
Query: 123 IFYRGKNYVQP 133
I YRG NY P
Sbjct: 222 ILYRGTNYKYP 232
>gi|296087726|emb|CBI34982.3| unnamed protein product [Vitis vinifera]
Length = 1028
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 109/219 (49%), Gaps = 10/219 (4%)
Query: 10 LRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVPIGRRGVF 69
L K K L+ L+ ++P Q P + +T EER+ +K+ + ++ +GRRG+F
Sbjct: 577 LEKKERAEKLLA-ELEEAQIP--QQPEIDKEGITEEERYMLRKVGLRMKPFLLLGRRGIF 633
Query: 70 GGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPI---QIIGDDTVIFYR 126
G + NMH+HWK E VK+ IH A + SGGI + ++ +I YR
Sbjct: 634 DGTVENMHLHWKYRELVKIISNGRSIEDIHGVARTLEAESGGILVAVERVSKGYAIIMYR 693
Query: 127 GKNYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKEL-ELYYRHIALYGDPN 185
GKNY +P + P L+K++AL++S Q ES++ + + + EL ++ ++ D
Sbjct: 694 GKNYKRPASLRPQTLLNKREALKRSLEAQRRESLKLHVLRLTRNIDELKHQLVSRIKDKE 753
Query: 186 NRNPMSIMDNPSKVTKESWKFKMV---ERKSLDSTYDAL 221
+ + + + +E + ++ +DS+ D+L
Sbjct: 754 TNSKQLVDKSRLHLARERYGADVILIHSSDGMDSSRDSL 792
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 59/131 (45%), Gaps = 7/131 (5%)
Query: 7 FHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVPIGRR 66
FH LRK K +L R E + P + L EE K + + + +G+
Sbjct: 157 FHELRKEVKREK----KLVRKE--DERAPTLAELTLPEEELRRLKGIGIQIRKKLKVGKA 210
Query: 67 GVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTVIFYR 126
G+ G++ +H W++ E VK+ C+ + + + R +GG+ I G +I YR
Sbjct: 211 GITEGIVNGIHERWRRAEVVKIRCEDICKLNMKRTHDILERKTGGLVIWRSG-SYIILYR 269
Query: 127 GKNYVQPEIMS 137
G NY P +S
Sbjct: 270 GANYKYPYFLS 280
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 67/138 (48%), Gaps = 10/138 (7%)
Query: 37 VKPHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPG 96
+KP +LT +E +++ + + +GR G+ +M W+K E K+ K
Sbjct: 401 LKP-KLTNDEMTVLRRLGRPLPCHFALGRNRKLQGLAASMIKLWEKCEIAKIAVKRGVQN 459
Query: 97 QIHEF-AEEIARLSGGIPIQIIGDDT--VIFYRGKNYVQPEIMSPIDTLSKKKALEKSKY 153
E AEE+ L+GG ++ D ++FYRGK+++ P + S I+ +K + + K
Sbjct: 460 TNSEMMAEELKNLTGGT---LLSRDREFIVFYRGKDFLPPAVSSAIEA-RRKYGIHRGK- 514
Query: 154 EQSLESVRRFIAMAEKEL 171
Q ++ R I E EL
Sbjct: 515 -QKIDHHRLAINAEESEL 531
>gi|334186525|ref|NP_193187.3| CRM family member 3B [Arabidopsis thaliana]
gi|332658053|gb|AEE83453.1| CRM family member 3B [Arabidopsis thaliana]
Length = 907
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 72/126 (57%), Gaps = 3/126 (2%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
+T EERF F+K+ K ++ +GRRGVF G + NMH+HWK E +K+ K +
Sbjct: 665 ITEEERFMFQKLGLKMKAFLLLGRRGVFDGTVENMHLHWKYRELIKILVKAKTLEGAQKV 724
Query: 102 AEEIARLSGGIPI---QIIGDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLE 158
A + SGGI + +I VI YRGK+Y +P + P + L+K+KAL +S Q E
Sbjct: 725 AMALEAESGGILVSVDKISKGYAVIVYRGKDYKRPTTLRPKNLLTKRKALARSLELQKRE 784
Query: 159 SVRRFI 164
++ + I
Sbjct: 785 ALIKHI 790
Score = 37.7 bits (86), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 2/110 (1%)
Query: 27 YEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETV 86
YE P P L +E +++A + +GR G+ M W+K
Sbjct: 408 YEPPFRALPYGVRSTLGTKEATSLRRIATVLPPHFALGRSRQLQGLATAMVKLWQKSLIA 467
Query: 87 KVFCKPSKPGQIHE-FAEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEI 135
KV K E AE+I RL+GG+ + D ++FYRGK+++ E+
Sbjct: 468 KVALKRGVQLTTSERMAEDIKRLTGGMLLSR-NKDFLVFYRGKSFLSLEV 516
>gi|225452572|ref|XP_002275511.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Vitis vinifera]
Length = 1044
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 109/219 (49%), Gaps = 10/219 (4%)
Query: 10 LRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVPIGRRGVF 69
L K K L+ L+ ++P Q P + +T EER+ +K+ + ++ +GRRG+F
Sbjct: 577 LEKKERAEKLLA-ELEEAQIP--QQPEIDKEGITEEERYMLRKVGLRMKPFLLLGRRGIF 633
Query: 70 GGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPI---QIIGDDTVIFYR 126
G + NMH+HWK E VK+ IH A + SGGI + ++ +I YR
Sbjct: 634 DGTVENMHLHWKYRELVKIISNGRSIEDIHGVARTLEAESGGILVAVERVSKGYAIIMYR 693
Query: 127 GKNYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKEL-ELYYRHIALYGDPN 185
GKNY +P + P L+K++AL++S Q ES++ + + + EL ++ ++ D
Sbjct: 694 GKNYKRPASLRPQTLLNKREALKRSLEAQRRESLKLHVLRLTRNIDELKHQLVSRIKDKE 753
Query: 186 NRNPMSIMDNPSKVTKESWKFKMV---ERKSLDSTYDAL 221
+ + + + +E + ++ +DS+ D+L
Sbjct: 754 TNSKQLVDKSRLHLARERYGADVILIHSSDGMDSSRDSL 792
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 59/131 (45%), Gaps = 7/131 (5%)
Query: 7 FHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVPIGRR 66
FH LRK K +L R E + P + L EE K + + + +G+
Sbjct: 157 FHELRKEVKREK----KLVRKE--DERAPTLAELTLPEEELRRLKGIGIQIRKKLKVGKA 210
Query: 67 GVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTVIFYR 126
G+ G++ +H W++ E VK+ C+ + + + R +GG+ I G +I YR
Sbjct: 211 GITEGIVNGIHERWRRAEVVKIRCEDICKLNMKRTHDILERKTGGLVIWRSG-SYIILYR 269
Query: 127 GKNYVQPEIMS 137
G NY P +S
Sbjct: 270 GANYKYPYFLS 280
Score = 45.1 bits (105), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 67/138 (48%), Gaps = 10/138 (7%)
Query: 37 VKPHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPG 96
+KP +LT +E +++ + + +GR G+ +M W+K E K+ K
Sbjct: 401 LKP-KLTNDEMTVLRRLGRPLPCHFALGRNRKLQGLAASMIKLWEKCEIAKIAVKRGVQN 459
Query: 97 QIHEF-AEEIARLSGGIPIQIIGDDT--VIFYRGKNYVQPEIMSPIDTLSKKKALEKSKY 153
E AEE+ L+GG ++ D ++FYRGK+++ P + S I+ +K + + K
Sbjct: 460 TNSEMMAEELKNLTGGT---LLSRDREFIVFYRGKDFLPPAVSSAIEA-RRKYGIHRGK- 514
Query: 154 EQSLESVRRFIAMAEKEL 171
Q ++ R I E EL
Sbjct: 515 -QKIDHHRLAINAEESEL 531
>gi|2244807|emb|CAB10230.1| hypothetical protein [Arabidopsis thaliana]
gi|7268157|emb|CAB78493.1| hypothetical protein [Arabidopsis thaliana]
Length = 918
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 72/126 (57%), Gaps = 3/126 (2%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
+T EERF F+K+ K ++ +GRRGVF G + NMH+HWK E +K+ K +
Sbjct: 676 ITEEERFMFQKLGLKMKAFLLLGRRGVFDGTVENMHLHWKYRELIKILVKAKTLEGAQKV 735
Query: 102 AEEIARLSGGIPI---QIIGDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLE 158
A + SGGI + +I VI YRGK+Y +P + P + L+K+KAL +S Q E
Sbjct: 736 AMALEAESGGILVSVDKISKGYAVIVYRGKDYKRPTTLRPKNLLTKRKALARSLELQKRE 795
Query: 159 SVRRFI 164
++ + I
Sbjct: 796 ALIKHI 801
>gi|413946390|gb|AFW79039.1| hypothetical protein ZEAMMB73_840751 [Zea mays]
Length = 132
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 68/113 (60%), Gaps = 3/113 (2%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
+T EE+ F+++ + Y+P+G RGVF GVI NMH+HWK E VK+ K + E
Sbjct: 2 ITDEEKSVFRRIGLRLKAYLPLGVRGVFDGVIENMHLHWKHREVVKLISKQKTLSFVEET 61
Query: 102 AEEIARLSGGIPIQII---GDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKS 151
A +A SGGI + I +IFYRGKNY +P + P + L+K KAL+++
Sbjct: 62 ARLLAYESGGILVAIERVPKGYALIFYRGKNYRRPINIRPRNLLTKAKALKRA 114
>gi|218201029|gb|EEC83456.1| hypothetical protein OsI_28955 [Oryza sativa Indica Group]
Length = 514
Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 77/140 (55%), Gaps = 3/140 (2%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
LT EER F+K+ K +V +GRRGVF GVI +H HWK E VKV K ++ QI
Sbjct: 355 LTEEERRIFRKIGLKMDEHVLLGRRGVFEGVIEEIHQHWKHKEVVKVITKQNQANQITYT 414
Query: 102 AEEIARLSGGIPIQI---IGDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLE 158
+ + +GG I I +I YRGKNY +P +P + L+K++AL++S Q
Sbjct: 415 SMMLEVETGGTLIAIERFTTSHAIILYRGKNYRRPTKSAPSNLLTKREALQRSIEVQRRG 474
Query: 159 SVRRFIAMAEKELELYYRHI 178
S++ F +K ++ R +
Sbjct: 475 SMKYFAQERKKSIDELKREL 494
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
Query: 35 PVVKPHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSK 94
P V+P L EE Y +K A+ + +GR G+ + W+K KV K
Sbjct: 137 PGVRP-TLADEELTYLRKHARPLPTHFVLGRNTKLQGLAAAILKLWEKSLIAKVAVKVGI 195
Query: 95 PGQIHE-FAEEIARLSGGIPIQIIGDDTVIFYRGKNYV 131
HE A + RL+GG I + D +I YRGK+++
Sbjct: 196 QNSNHEQMARNLKRLTGGTVI-LRNKDYIIIYRGKDFL 232
>gi|115476078|ref|NP_001061635.1| Os08g0360100 [Oryza sativa Japonica Group]
gi|75132343|sp|Q6YYA3.1|CRS1_ORYSJ RecName: Full=Chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic; AltName: Full=Chloroplastic RNA
splicing factor 1; AltName: Full=Protein CHLOROPLAST RNA
SPLICING 1; Flags: Precursor
gi|38637564|dbj|BAD03815.1| putative CRS1 [Oryza sativa Japonica Group]
gi|113623604|dbj|BAF23549.1| Os08g0360100 [Oryza sativa Japonica Group]
Length = 725
Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 77/140 (55%), Gaps = 3/140 (2%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
LT EER F+K+ K +V +GRRGVF GVI +H HWK E VKV K ++ QI
Sbjct: 566 LTEEERRIFRKIGLKMDEHVLLGRRGVFEGVIEEIHQHWKHKEVVKVITKQNQASQITYT 625
Query: 102 AEEIARLSGGIPIQI---IGDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLE 158
+ + +GG I I +I YRGKNY +P +P + L+K++AL++S Q
Sbjct: 626 SMMLEVETGGTLIAIERFTTSHAIILYRGKNYRRPTKSAPSNLLTKREALQRSIEVQRRG 685
Query: 159 SVRRFIAMAEKELELYYRHI 178
S++ F +K ++ R +
Sbjct: 686 SMKYFAQERKKSIDELKREL 705
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
Query: 35 PVVKPHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSK 94
P V+P L EE Y +K A+ + +GR G+ + W+K KV K
Sbjct: 348 PGVRP-ALADEELTYLRKHARPLPTHFVLGRNTKLQGLAAAILKLWEKSLIAKVAVKVGI 406
Query: 95 PGQIHE-FAEEIARLSGGIPIQIIGDDTVIFYRGKNYV 131
HE A + RL+GG I + D +I YRGK+++
Sbjct: 407 QNTNHEQMARNLKRLTGGTVI-LRNKDYIIIYRGKDFL 443
>gi|357167767|ref|XP_003581323.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Brachypodium distachyon]
Length = 1053
Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 76/138 (55%), Gaps = 4/138 (2%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
++ EER+ +K+ + ++ +GRRGVF G I NMH+HWK E VK+ CK +
Sbjct: 636 ISDEERYMLRKIGLQMKPFLLLGRRGVFDGTIENMHLHWKYRELVKIICKEHSMKDVEYA 695
Query: 102 AEEIARLSGGIPI---QIIGDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLE 158
A + SGGI + ++ +I YRGKNY +P + P L+K+ AL++S Q +
Sbjct: 696 ARTLESQSGGILVAVERVSKGHAIIMYRGKNYHRPSTLRPKSLLNKRDALKRSVEYQRQK 755
Query: 159 SVRRFIAMAEKELELYYR 176
S++ + K ++ Y R
Sbjct: 756 SLKLHVLNLSKNID-YLR 772
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 63 IGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTV 122
+G+ GV G++ +H W+ E VK+ C + E + R +GG+ I G T+
Sbjct: 161 VGKPGVTEGIVNGIHERWRNVELVKIRCDDVSAMNMRRTHEILERKTGGLVIWRSG-STI 219
Query: 123 IFYRGKNYVQP 133
I YRG NY P
Sbjct: 220 ILYRGTNYKYP 230
Score = 43.5 bits (101), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 53/107 (49%), Gaps = 2/107 (1%)
Query: 35 PVVKPHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSK 94
P P +LT E +++A+ + +GR G+ ++M W++ E K+ K
Sbjct: 435 PSGVPSKLTDREMTILRRLARPLPYHYALGRSSNLQGLAVSMIKLWERCEVAKIAIKRGA 494
Query: 95 PGQIHEF-AEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEIMSPID 140
E +EE+ L+GG + + +++FYRGK+++ P + I+
Sbjct: 495 YCIDSELVSEELKGLTGGTLLS-RDNKSIVFYRGKDFLSPAVSLAIE 540
Score = 40.4 bits (93), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 48/114 (42%), Gaps = 18/114 (15%)
Query: 42 LTGEERFYFKKMA--QKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQ-I 98
L+ ER +K A K+ + IGR V GV + H+KKH V K G +
Sbjct: 923 LSNRERLMLRKQALKMKKRPVLAIGRNNVITGVAKTIQTHFKKHPLAIVNIKNRADGTPV 982
Query: 99 HEFAEEIARLSGGIPIQIIGDDTVIFYRG--------------KNYVQPEIMSP 138
+ E+ R +G + + + VI YRG N V+ E++SP
Sbjct: 983 QQLISELERATGSVLVS-REPNKVILYRGWGAEVTQKSSKENSTNEVEKEVISP 1035
>gi|222640429|gb|EEE68561.1| hypothetical protein OsJ_27045 [Oryza sativa Japonica Group]
Length = 725
Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 77/140 (55%), Gaps = 3/140 (2%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
LT EER F+K+ K +V +GRRGVF GVI +H HWK E VKV K ++ QI
Sbjct: 566 LTEEERRIFRKIGLKMDEHVLLGRRGVFEGVIEEIHQHWKHKEVVKVITKQNQASQITYT 625
Query: 102 AEEIARLSGGIPIQI---IGDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLE 158
+ + +GG I I +I YRGKNY +P +P + L+K++AL++S Q
Sbjct: 626 SMMLEVETGGTLIAIERFTTSHAIILYRGKNYRRPTKSAPSNLLTKREALQRSIEVQRRG 685
Query: 159 SVRRFIAMAEKELELYYRHI 178
S++ F +K ++ R +
Sbjct: 686 SMKYFAQERKKSIDELKREL 705
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
Query: 35 PVVKPHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSK 94
P V+P L EE Y +K A+ + +GR G+ + W+K KV K
Sbjct: 348 PGVRP-ALADEELTYLRKHARPLPTHFVLGRNTKLQGLAAAILKLWEKSLIAKVAVKVGI 406
Query: 95 PGQIHE-FAEEIARLSGGIPIQIIGDDTVIFYRGKNYV 131
HE A + RL+GG I + D +I YRGK+++
Sbjct: 407 QNTNHEQMARNLKRLTGGTVI-LRNKDYIIIYRGKDFL 443
>gi|326492786|dbj|BAJ90249.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 730
Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 79/139 (56%), Gaps = 4/139 (2%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
LT EER F+K+ K +V +GRRG+F GVI +H HWK E VKV K ++ QI
Sbjct: 579 LTEEERMIFRKIGLKMDEHVLLGRRGIFDGVIEEIHQHWKHKEIVKVITKQNQAYQITYT 638
Query: 102 AEEIARLSGGIPI---QIIGDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLE 158
+ + +GG+ I ++ +I YRGKNY +P SP + L+K++AL +S Q
Sbjct: 639 SMLLEVETGGMLIATQKLTNSHAIILYRGKNYHRPTKSSPSNLLTKREALRRSVEVQRRG 698
Query: 159 SVRRFIAMAEKELE-LYYR 176
S++ ++ K +E L +R
Sbjct: 699 SMKYYVWERHKSIEDLQWR 717
Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
Query: 35 PVVKPHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSK 94
P V+P L EE Y +K+A+ + +GR G+ + W+K K+ K
Sbjct: 360 PGVRP-TLADEELTYLRKLARPLPTHFALGRNTRLQGLAAAVLKLWEKSLIAKIAVKVGI 418
Query: 95 PGQIHE-FAEEIARLSGGIPIQIIGDDTVIFYRGKNYV 131
+E A + L+GG I + D VI YRGK+++
Sbjct: 419 QNTNNEQMAWNLKHLTGGT-IILRNKDFVILYRGKDFL 455
>gi|297800788|ref|XP_002868278.1| hypothetical protein ARALYDRAFT_330061 [Arabidopsis lyrata subsp.
lyrata]
gi|297314114|gb|EFH44537.1| hypothetical protein ARALYDRAFT_330061 [Arabidopsis lyrata subsp.
lyrata]
Length = 919
Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 72/126 (57%), Gaps = 3/126 (2%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
+T EERF F+K+ + ++ +GRRGVF G + NMH+HWK E +K+ K +
Sbjct: 670 ITEEERFMFQKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELIKILVKAKSLEGAKKV 729
Query: 102 AEEIARLSGGIPI---QIIGDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLE 158
A + SGGI + +I VI YRGK+Y +P + P + L+K+KAL +S Q E
Sbjct: 730 AMALEAESGGILVSVDKISKGYAVIVYRGKDYKRPTTLRPKNLLTKRKALARSLELQKRE 789
Query: 159 SVRRFI 164
++ + I
Sbjct: 790 ALIKHI 795
>gi|154986387|gb|ABS89147.1| CFM2 alternative polyadenylation form 2 [Zea mays]
Length = 783
Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 67/117 (57%), Gaps = 3/117 (2%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
++ +ER+ +K+ K ++ +GRRGVF G I NMH+HWK E VK+ CK + +
Sbjct: 621 ISEDERYMLRKVGLKMKQFLLLGRRGVFDGTIENMHLHWKYRELVKIICKEHRLEDVEYA 680
Query: 102 AEEIARLSGGIPI---QIIGDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQ 155
A + SGGI + ++ +I YRGKNY +P + P LSK+ AL++S Q
Sbjct: 681 ARTLEAESGGILVAVEKVSKGHAIIVYRGKNYKRPSKLRPKTLLSKRDALKRSLENQ 737
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 63 IGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTV 122
+G+ G+ G++ +H W+ E VK+ C+ + E + R +GG+ I G T+
Sbjct: 157 VGKAGITEGIVNGIHERWRNAEVVKLRCEDVWAMNMRRTHEILERKTGGLVIWRSG-STI 215
Query: 123 IFYRGKNYVQP 133
I YRG NY P
Sbjct: 216 ILYRGTNYTYP 226
Score = 43.5 bits (101), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 2/107 (1%)
Query: 35 PVVKPHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSK 94
P P +LT E +++A + +GR G+ +M W++ E K+ K
Sbjct: 419 PSGVPPKLTDREMTILRRLAHALPFHYALGRSSNLQGLAASMIKLWERCEVAKIALKRDA 478
Query: 95 PGQIHEF-AEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEIMSPID 140
E EE+ L+GG + ++++FYRGK+++ P + I+
Sbjct: 479 HNTDSELITEEVKELTGGTLLS-RDKESIVFYRGKDFLPPAVSLAIE 524
>gi|357145812|ref|XP_003573775.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Brachypodium distachyon]
Length = 730
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 81/139 (58%), Gaps = 5/139 (3%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
LT EER F+K+ K +V +GRRGVF GVI +H HWK E VKV K ++ QI
Sbjct: 580 LTEEERMIFRKIGLKMDEHVLLGRRGVFDGVIEEIHQHWKHKEIVKVITKQNQSYQITYT 639
Query: 102 AEEIARLSGGIPI---QIIGDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLE 158
+ + +GG+ I ++ +I YRGKNY +PE SP + L+K++AL +S Q
Sbjct: 640 SMLLEVETGGVLIATQKLPHSHAIILYRGKNYRRPE-KSPSNLLTKREALRRSVEVQRRG 698
Query: 159 SVRRFIAMAEKEL-ELYYR 176
S++ ++ +K + EL +R
Sbjct: 699 SMKYYVWERQKSIEELQWR 717
Score = 37.7 bits (86), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
Query: 35 PVVKPHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSK 94
P V+P L EE Y +K+A+ + +GR G+ + W+K K+ K
Sbjct: 361 PGVRP-TLADEELTYLRKLARPLPAHFALGRNTKLQGLAAAILKLWEKSLVAKIAVKVGI 419
Query: 95 PGQIHE-FAEEIARLSGGIPIQIIGDDTVIFYRGKNYV 131
+E A + L+GG I + D +I YRGK+++
Sbjct: 420 ENTNNEQMAWNLKHLTGGT-IILRNKDFIILYRGKDFL 456
>gi|356573410|ref|XP_003554854.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 1028
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 77/133 (57%), Gaps = 4/133 (3%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
++ EE++ +++ ++ +GRRGVF G + NMH+HWK E VK+ C S ++H+
Sbjct: 563 ISKEEKYMLRRIGLMMKPFLLLGRRGVFDGTVENMHLHWKYRELVKIICNGSLE-EVHQI 621
Query: 102 AEEIARLSGGIPI---QIIGDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLE 158
A + SGGI + ++ +I YRGKNY P + P L+K++AL++S Q E
Sbjct: 622 ALTLEAESGGILVAVERVRKGFAIIVYRGKNYSVPVCLRPQTLLNKRQALKRSIEAQRRE 681
Query: 159 SVRRFIAMAEKEL 171
S++ I +KE+
Sbjct: 682 SLKLRILTLDKEI 694
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 61 VPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDD 120
V + + G+ ++ +H WK+ E V+VFC+ + + + R +GG+ + G
Sbjct: 168 VRLAKAGITEQIVDVIHERWKRSEVVRVFCEELSRDDMRRTHDLLERKTGGLVVWRSGTK 227
Query: 121 TVIFYRGKNYVQPEIMS 137
+I YRG +Y P +S
Sbjct: 228 -IILYRGADYKYPYFLS 243
Score = 37.7 bits (86), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 6/101 (5%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
LT +E K++ + + +GR G+ + W++ E VK+ K +
Sbjct: 369 LTDDEMTTLKRLGKPLPCHFALGRNRKLQGLAAAIIKLWERCEIVKIAVKRGVQNTSSKI 428
Query: 102 -AEEIARLSGGIPIQIIGDDT--VIFYRGKNYVQPEIMSPI 139
A+E+ L+GGI ++ D +FYRGK+Y+ + S I
Sbjct: 429 MAKELKHLTGGI---LLSRDREFFVFYRGKDYLPAAVSSAI 466
>gi|297803062|ref|XP_002869415.1| hypothetical protein ARALYDRAFT_328739 [Arabidopsis lyrata subsp.
lyrata]
gi|297315251|gb|EFH45674.1| hypothetical protein ARALYDRAFT_328739 [Arabidopsis lyrata subsp.
lyrata]
Length = 775
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 90/178 (50%), Gaps = 16/178 (8%)
Query: 22 LRLKRYEVPKVQGPVVKPHEL-------TGEERFYFKKMAQKRSNYVPIGRRGVFGGVIL 74
LR ++ KVQ + P EL T EER ++K+ ++ +GRR V+ G I
Sbjct: 578 LRRAERDLAKVQKDL-DPSELPTDSETITEEERLLYRKIGLSMDPFLLLGRREVYDGTIE 636
Query: 75 NMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQI---IGDDTVIFYRGKNYV 131
NMH+HWK E VKV + Q+ A + SGG+ + + + ++I YRGKNY
Sbjct: 637 NMHLHWKHRELVKVIVRGKSLPQVKHIAISLEAESGGVLVSVDKTMKGYSIILYRGKNYQ 696
Query: 132 QPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKELELYYRHIALYGDPNNRNP 189
P + P + L++KKA +S Q E+++ +A E+ +EL G ++R P
Sbjct: 697 MPFRLRPSNLLTRKKAFARSIELQRREALKYHVADLEERIELLK-----TGQDDDREP 749
Score = 37.0 bits (84), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 48/104 (46%), Gaps = 3/104 (2%)
Query: 37 VKPHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPG 96
VKP L+ E +++A+ + +GR G+ M W K K+ K
Sbjct: 384 VKPC-LSNTEMTEMRRLARTSPPHFALGRSRELQGLAKAMVKLWAKSAIAKIAIKRGVEN 442
Query: 97 QIHE-FAEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEIMSPI 139
+E AEE+ RL+ G+ + + ++FYRG +++ P + +
Sbjct: 443 TRNERMAEELKRLTRGVLVSR-NKEYIVFYRGNDFMPPAVAEAL 485
>gi|5123569|emb|CAB45335.1| putative protein [Arabidopsis thaliana]
gi|7269874|emb|CAB79733.1| putative protein [Arabidopsis thaliana]
Length = 776
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 94/183 (51%), Gaps = 24/183 (13%)
Query: 12 KASALNKFLSLRL-------KRYE--VPKVQGPVVKPHEL-------TGEERFYFKKMAQ 55
K +AL + L LRL +R E + KVQ + P EL T EER ++K+
Sbjct: 560 KRAALIRDLELRLLYGKQKLRRAERDLAKVQKDL-DPSELPTDSEIITEEERLLYRKIGL 618
Query: 56 KRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQ 115
++ +GRR V+ G I NMH+HWK E VKV + Q+ A + SGG+ +
Sbjct: 619 SMDPFLLLGRREVYDGTIENMHLHWKHRELVKVIVRGKSLPQVKHIAISLEAESGGVLVS 678
Query: 116 IIGDDT-----VIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKE 170
+ D T +I YRGKNY P + P + L++KKA +S Q E+++ +A E+
Sbjct: 679 V--DKTMKGYAIILYRGKNYQMPFRLRPSNLLTRKKAFARSIELQRREALKYHVADLEER 736
Query: 171 LEL 173
+EL
Sbjct: 737 IEL 739
>gi|242078893|ref|XP_002444215.1| hypothetical protein SORBIDRAFT_07g015120 [Sorghum bicolor]
gi|241940565|gb|EES13710.1| hypothetical protein SORBIDRAFT_07g015120 [Sorghum bicolor]
Length = 728
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 77/140 (55%), Gaps = 3/140 (2%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
LT EE+ F+++ +K V +GRRG+F GVI +H HWK E VKV K ++ QI
Sbjct: 577 LTEEEKIMFRRIGRKMDGLVLLGRRGIFDGVIEEIHQHWKHKEVVKVITKQNQARQIMYT 636
Query: 102 AEEIARLSGGIPI---QIIGDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLE 158
A + +GGI I ++ +I YRGKNY +P S + L+K++AL +S Q
Sbjct: 637 ANLLEVETGGILIAVEKLTTSHAIILYRGKNYRRPAKSSFSNLLTKREALRRSLEVQRRG 696
Query: 159 SVRRFIAMAEKELELYYRHI 178
S++ F+ +K + R +
Sbjct: 697 SMKYFVRERQKSISELKRRL 716
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
Query: 35 PVVKPHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSK 94
P V+P L EE Y +K+A+ + +GR G+ + W+K K+ K
Sbjct: 357 PGVRP-TLADEELTYLRKLARPLPTHFALGRNTRLQGLAAAILKLWEKSLIAKIAVKVGI 415
Query: 95 PGQIHE-FAEEIARLSGGIPIQIIGDDTVIFYRGKNYV 131
+E A + L+GG I + D VI YRGK+++
Sbjct: 416 QNTNNEQMAWNLKHLTGGTVI-LRNKDFVILYRGKDFL 452
>gi|334187011|ref|NP_194704.2| CRS1 / YhbY (CRM) domain-containing protein [Arabidopsis thaliana]
gi|332660271|gb|AEE85671.1| CRS1 / YhbY (CRM) domain-containing protein [Arabidopsis thaliana]
Length = 841
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 85/164 (51%), Gaps = 15/164 (9%)
Query: 22 LRLKRYEVPKVQGPVVKPHEL-------TGEERFYFKKMAQKRSNYVPIGRRGVFGGVIL 74
LR ++ KVQ + P EL T EER ++K+ ++ +GRR V+ G I
Sbjct: 621 LRRAERDLAKVQKDL-DPSELPTDSEIITEEERLLYRKIGLSMDPFLLLGRREVYDGTIE 679
Query: 75 NMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDT-----VIFYRGKN 129
NMH+HWK E VKV + Q+ A + SGG+ + + D T +I YRGKN
Sbjct: 680 NMHLHWKHRELVKVIVRGKSLPQVKHIAISLEAESGGVLVSV--DKTMKGYAIILYRGKN 737
Query: 130 YVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKELEL 173
Y P + P + L++KKA +S Q E+++ +A E+ +EL
Sbjct: 738 YQMPFRLRPSNLLTRKKAFARSIELQRREALKYHVADLEERIEL 781
Score = 37.0 bits (84), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 48/104 (46%), Gaps = 3/104 (2%)
Query: 37 VKPHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPG 96
VKP L+ E +++A+ + +GR G+ M W K K+ K
Sbjct: 427 VKPC-LSNTEMTEMRRLARTSPPHFALGRSRELQGLAKAMVKLWAKSAIAKIAIKRGVEN 485
Query: 97 QIHE-FAEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEIMSPI 139
+E AEE+ RL+ G+ + + ++FYRG +++ P + +
Sbjct: 486 TRNERMAEELKRLTRGVLVSR-NKEYIVFYRGNDFMPPAVAEAL 528
>gi|302768979|ref|XP_002967909.1| hypothetical protein SELMODRAFT_61058 [Selaginella moellendorffii]
gi|300164647|gb|EFJ31256.1| hypothetical protein SELMODRAFT_61058 [Selaginella moellendorffii]
Length = 557
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 69/120 (57%), Gaps = 3/120 (2%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
+T EER+ +++ K ++ +GRRGV+ G+I NMH+HWK E VKV K I +
Sbjct: 438 ITEEERYTLQRVGLKMKAFLLLGRRGVYSGIIENMHLHWKYRELVKVVYKGKDRMDIEDT 497
Query: 102 AEEIARLSGGIPIQII---GDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLE 158
A+ I SGGI I I ++YRGKNY +PE + P + L+K+KAL + Q E
Sbjct: 498 AKMIECESGGILIGIYPVSKGQVFLYYRGKNYRRPEELRPHNLLTKRKALARYTETQRRE 557
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 4/93 (4%)
Query: 61 VPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDD 120
+ + + G+ V+ +H W+ E VK+ C + + EE+ + +GG+ I G
Sbjct: 52 IKVKKLGITRNVVQAIHQKWRTSEIVKLKCDQEVAMNMRKVHEELEKRTGGLVIWRAGTA 111
Query: 121 TVIFYRGKNYVQP--EIMSPIDTLSK-KKALEK 150
VI YRGK+Y P E P +++SK K+++EK
Sbjct: 112 LVI-YRGKDYAGPPKERWIPTESVSKPKESVEK 143
>gi|147852955|emb|CAN81271.1| hypothetical protein VITISV_006146 [Vitis vinifera]
Length = 1399
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 11/156 (7%)
Query: 10 LRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVPIGRRGVF 69
L K K L+ L+ ++P Q P + +T EER+ +K+ + ++ +GRRG+F
Sbjct: 952 LEKKERAEKLLA-ELEEAQIP--QQPEIDKEGITEEERYMLRKVGLRMKPFLLLGRRGIF 1008
Query: 70 GGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPI---QIIGDDTVIFYR 126
G + NMH+HWK E VK+ IH A + SGGI + ++ +I YR
Sbjct: 1009 DGTVENMHLHWKYRELVKIISNGRSIEDIHGVARTLEAESGGILVAVERVSKGYAIIMYR 1068
Query: 127 GKNYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRR 162
GKNY +P + P L+K++A+++ SLE+ RR
Sbjct: 1069 GKNYKRPASLRPQTLLNKREAMKR-----SLEAQRR 1099
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 59/131 (45%), Gaps = 7/131 (5%)
Query: 7 FHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVPIGRR 66
FH LRK K +L R E + P + L EE K + + + +G+
Sbjct: 349 FHELRKEVKREK----KLVRKE--DERAPTLAELTLPEEELRRLKGIGIQIRKKLKVGKA 402
Query: 67 GVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTVIFYR 126
G+ G++ +H W++ E VK+ C+ + + + R +GG+ I G +I YR
Sbjct: 403 GITEGIVNGIHERWRRAEVVKIRCEDICKLNMKRTHDILERKTGGLVIWRSG-SYIILYR 461
Query: 127 GKNYVQPEIMS 137
G NY P +S
Sbjct: 462 GANYKYPYFLS 472
>gi|414870652|tpg|DAA49209.1| TPA: chloroplast RNA splicing1 [Zea mays]
Length = 715
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 75/133 (56%), Gaps = 3/133 (2%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
LT EE+ F+++ +K V +GRRG+F GVI +H HWK E VKV K ++ QI
Sbjct: 564 LTEEEKIMFRRIGRKMDGLVLLGRRGIFDGVIEEIHQHWKHKEVVKVITKQNQTRQIMYA 623
Query: 102 AEEIARLSGGIPI---QIIGDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLE 158
A + +GGI I ++ +I YRGKNY +P S + L+K++AL +S Q
Sbjct: 624 ASLLEVETGGILIAVEKLTTSHAIILYRGKNYRRPAKSSFSNLLTKREALRRSIEVQRRG 683
Query: 159 SVRRFIAMAEKEL 171
S++ F+ +K +
Sbjct: 684 SMKYFVRERQKSI 696
>gi|162463484|ref|NP_001105008.1| chloroplastic group IIA intron splicing facilitator CRS1,
chloroplastic precursor [Zea mays]
gi|75173308|sp|Q9FYT6.1|CRS1_MAIZE RecName: Full=Chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic; AltName: Full=Chloroplastic RNA
splicing factor 1; AltName: Full=Protein CHLOROPLAST RNA
SPLICING 1; Flags: Precursor
gi|9837550|gb|AAG00595.1|AF290414_1 CRS1 [Zea mays]
Length = 715
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 75/133 (56%), Gaps = 3/133 (2%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
LT EE+ F+++ +K V +GRRG+F GVI +H HWK E VKV K ++ QI
Sbjct: 564 LTEEEKIMFRRIGRKMDGLVLLGRRGIFDGVIEEIHQHWKHKEVVKVITKQNQTRQIMYA 623
Query: 102 AEEIARLSGGIPI---QIIGDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLE 158
A + +GGI I ++ +I YRGKNY +P S + L+K++AL +S Q
Sbjct: 624 ASLLEVETGGILIAVEKLTTSHAIILYRGKNYRRPAKSSFSNLLTKREALRRSIEVQRRG 683
Query: 159 SVRRFIAMAEKEL 171
S++ F+ +K +
Sbjct: 684 SMKYFVRERQKSI 696
>gi|167998334|ref|XP_001751873.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696971|gb|EDQ83308.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 590
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/144 (38%), Positives = 81/144 (56%), Gaps = 17/144 (11%)
Query: 40 HELTGEERFYFKKM-----AQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSK 94
+++ EER+ F K+ A+ + GRRGVF GV+ NMH+HWK E VKV K
Sbjct: 145 EQISDEERYMFMKLGLRMRARLLMGKLSSGRRGVFDGVVENMHLHWKHRELVKVIFK--- 201
Query: 95 PGQIHEFAEEIARL----SGGIPIQIIG---DDTVIFYRGKNYVQPEIMSPIDTLSKKKA 147
G I E AE+ A++ SGG+ + I+ +IFYRGKNY +P + P LSK++A
Sbjct: 202 -GPIFE-AEQTAKILEMESGGVLVGIVTTTKGQAIIFYRGKNYQRPSELRPRHLLSKRQA 259
Query: 148 LEKSKYEQSLESVRRFIAMAEKEL 171
E+S Q S+ + + EKE+
Sbjct: 260 YERSLEMQRKRSLEQHMLKLEKEI 283
>gi|326499694|dbj|BAJ86158.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 730
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 78/139 (56%), Gaps = 4/139 (2%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
LT EER F+K+ K +V +GRRG+F GVI +H HWK E VKV K ++ QI
Sbjct: 579 LTEEERMIFRKIGLKMDEHVLLGRRGIFDGVIEEIHQHWKHKEIVKVITKQNQAYQITYT 638
Query: 102 AEEIARLSGGIPI---QIIGDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLE 158
+ + +GG+ I ++ +I YRGKNY +P SP + +K++AL +S Q
Sbjct: 639 SMLLEVETGGMLIATQKLTNSHAIILYRGKNYHRPTKSSPSNLRTKREALRRSVEVQRRG 698
Query: 159 SVRRFIAMAEKELE-LYYR 176
S++ ++ K +E L +R
Sbjct: 699 SMKYYVWERHKSIEDLQWR 717
Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
Query: 35 PVVKPHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSK 94
P V+P L EE Y +K+A+ + +GR G+ + W+K K+ K
Sbjct: 360 PGVRP-TLADEELTYLRKLARPLPTHFALGRNTRLQGLAAAVLKLWEKSLIAKIAVKVGI 418
Query: 95 PGQIHE-FAEEIARLSGGIPIQIIGDDTVIFYRGKNYV 131
+E A + L+GG I + D VI YRGK+++
Sbjct: 419 QNTNNEQMAWNLKHLTGGT-IILRNKDFVILYRGKDFL 455
>gi|225452088|ref|XP_002280704.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Vitis vinifera]
Length = 1184
Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 71/125 (56%), Gaps = 3/125 (2%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
+T EER F+K+ QK + + +GRRGVF GVI +H HWK E VKV Q+
Sbjct: 635 ITEEERECFRKIGQKMDSSLLLGRRGVFDGVIEGLHQHWKHREIVKVITMQRSFSQVLYT 694
Query: 102 AEEIARLSGGIPIQIIG---DDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLE 158
A+ + SGG+ + I +I YRGKNY +P + P + L+K++AL +S Q +
Sbjct: 695 AKLLESESGGVLVSIDKLKEGHAIIIYRGKNYRRPIKLVPKNLLTKREALNRSLEMQRIG 754
Query: 159 SVRRF 163
S++ F
Sbjct: 755 SLKFF 759
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 41 ELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHE 100
+LT +E Y +K+A + +GR G+ + W+K VK+ K P +E
Sbjct: 421 KLTDDELTYLRKLAYALPTHFVLGRNRKLQGLAAAILKLWEKSLIVKIAIKWGIPNTKNE 480
Query: 101 -FAEEIARLSGGIPIQIIGDDTVIFYRGKNYV 131
A E+ L+GG+ + + +I YRGK+++
Sbjct: 481 QMANELKCLTGGV-LLLRNKFFIILYRGKDFL 511
>gi|296087258|emb|CBI33632.3| unnamed protein product [Vitis vinifera]
Length = 529
Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 71/125 (56%), Gaps = 3/125 (2%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
+T EER F+K+ QK + + +GRRGVF GVI +H HWK E VKV Q+
Sbjct: 336 ITEEERECFRKIGQKMDSSLLLGRRGVFDGVIEGLHQHWKHREIVKVITMQRSFSQVLYT 395
Query: 102 AEEIARLSGGIPIQIIG---DDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLE 158
A+ + SGG+ + I +I YRGKNY +P + P + L+K++AL +S Q +
Sbjct: 396 AKLLESESGGVLVSIDKLKEGHAIIIYRGKNYRRPIKLVPKNLLTKREALNRSLEMQRIG 455
Query: 159 SVRRF 163
S++ F
Sbjct: 456 SLKFF 460
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 2/99 (2%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHE- 100
LT +E Y +K+A + +GR G+ + W+K VK+ K P +E
Sbjct: 123 LTDDELTYLRKLAYALPTHFVLGRNRKLQGLAAAILKLWEKSLIVKIAIKWGIPNTKNEQ 182
Query: 101 FAEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEIMSPI 139
A E+ L+GG+ + + +I YRGK+++ + + I
Sbjct: 183 MANELKCLTGGV-LLLRNKFFIILYRGKDFLPCRVANLI 220
>gi|449490080|ref|XP_004158502.1| PREDICTED: LOW QUALITY PROTEIN: chloroplastic group IIA intron
splicing facilitator CRS1, chloroplastic-like [Cucumis
sativus]
Length = 760
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 73/133 (54%), Gaps = 3/133 (2%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
+T EER F+KM K + + +GRRGVF GVI +H HWK E VKV Q++
Sbjct: 613 ITNEERICFRKMGLKMDSCLTLGRRGVFDGVIEGLHQHWKHREVVKVITMQRAFNQVNYT 672
Query: 102 AEEIARLSGGIPIQIIG---DDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLE 158
A+ + SGGI + + +I +RGKNY +P + L+K+KAL +S Q +
Sbjct: 673 AKLLEAESGGILVSVDKLKEGYAIIIFRGKNYKRPLHSVSKNLLTKRKALSRSLEMQRIG 732
Query: 159 SVRRFIAMAEKEL 171
S++ F ++++
Sbjct: 733 SLKFFANQRQQKI 745
>gi|449441730|ref|XP_004138635.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Cucumis sativus]
Length = 760
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 73/133 (54%), Gaps = 3/133 (2%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
+T EER F+KM K + + +GRRGVF GVI +H HWK E VKV Q++
Sbjct: 613 ITNEERICFRKMGLKMDSCLTLGRRGVFDGVIEGLHQHWKHREVVKVITMQRAFNQVNYT 672
Query: 102 AEEIARLSGGIPIQIIG---DDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLE 158
A+ + SGGI + + +I +RGKNY +P + L+K+KAL +S Q +
Sbjct: 673 AKLLEAESGGILVSVDKLKEGYAIIIFRGKNYKRPLHSVSKNLLTKRKALSRSLEMQRIG 732
Query: 159 SVRRFIAMAEKEL 171
S++ F ++++
Sbjct: 733 SLKFFANQRQQKI 745
>gi|302761182|ref|XP_002964013.1| hypothetical protein SELMODRAFT_20706 [Selaginella moellendorffii]
gi|300167742|gb|EFJ34346.1| hypothetical protein SELMODRAFT_20706 [Selaginella moellendorffii]
Length = 555
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 69/121 (57%), Gaps = 4/121 (3%)
Query: 42 LTGEERFYFKKMAQKRSNYVPI-GRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHE 100
+T EER+ +++ K ++ + GRRGV+ G+I NMH+HWK E VKV K I +
Sbjct: 435 ITEEERYTLQRVGLKMKAFLLLAGRRGVYSGIIENMHLHWKYRELVKVVYKGKDRMDIED 494
Query: 101 FAEEIARLSGGIPIQII---GDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSL 157
A+ I SGGI I I ++YRGKNY +PE + P + L+K+KAL + Q
Sbjct: 495 TAKMIECESGGILIGIYPVSKGQVFLYYRGKNYRRPEELRPHNLLTKRKALARYTETQRR 554
Query: 158 E 158
E
Sbjct: 555 E 555
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 4/93 (4%)
Query: 61 VPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDD 120
+ + + G+ V+ +H W+ E VK+ C + + EE+ + +GG+ I G
Sbjct: 53 IKVKKLGITRNVVQAIHQKWRTSEIVKLKCDQEVAMNMRKVHEELEKRTGGLVIWRAGAA 112
Query: 121 TVIFYRGKNYVQP--EIMSPIDTLSK-KKALEK 150
VI YRGK+Y P E P +++SK K+++EK
Sbjct: 113 LVI-YRGKDYAGPPKERWIPTESVSKPKESVEK 144
>gi|356567264|ref|XP_003551841.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 712
Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 77/140 (55%), Gaps = 8/140 (5%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
+T EER F+K+ K + + +GRRG+F GV+ +H HWK E VKV Q+
Sbjct: 557 MTDEERECFRKIGLKMQSSLLLGRRGIFDGVLEGLHQHWKHREVVKVITMQKLFSQVINT 616
Query: 102 AEEIARLSGGIPIQIIG---DDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLE 158
A+ + SGGI + + +I YRGKNY +P I + L+K++AL +S Q +
Sbjct: 617 AKVLETESGGILVSVDKLKEGHAIIIYRGKNYKRPSIKLAKNLLTKREALRRSLEMQRIG 676
Query: 159 SVRRFI-----AMAEKELEL 173
S++ F A++E E++L
Sbjct: 677 SMKFFAHQREQAISELEVKL 696
Score = 44.3 bits (103), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 68/145 (46%), Gaps = 12/145 (8%)
Query: 28 EVPKVQGP--VVKPH---ELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKK 82
EVP Q P + PH +LT E YF+K+AQ + +GR G+ + W+K
Sbjct: 325 EVPGFQPPFRLCPPHSSAKLTDYELTYFRKLAQSLPTHFVLGRNKGLKGLASAILKLWEK 384
Query: 83 HETVKVFCKPSKPGQIHE-FAEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEIMSPIDT 141
K+ K P +E A E+ L+GG+ + + ++ YRG +++ + S
Sbjct: 385 SLIAKIAIKYGIPNTDNEMMANELKCLTGGV-LLLRNKFYILLYRGNDFLPRSVAS---- 439
Query: 142 LSKKKALEKSKYEQSLESVRRFIAM 166
L +K+ LE K Q E V R A+
Sbjct: 440 LVEKRELE-LKSRQLHEEVARMKAI 463
>gi|297612106|ref|NP_001068192.2| Os11g0592400 [Oryza sativa Japonica Group]
gi|255680227|dbj|BAF28555.2| Os11g0592400, partial [Oryza sativa Japonica Group]
Length = 108
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 57/95 (60%), Gaps = 4/95 (4%)
Query: 61 VPI-GRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPI---QI 116
VP+ GRRGVF G I NMH+HWK E VK+ K G + + A + SGGI + ++
Sbjct: 4 VPLSGRRGVFDGTIENMHLHWKYRELVKILVKAKSFGDVKKIALSLEAESGGILVSVDKV 63
Query: 117 IGDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKS 151
++ +RGK+Y +P + P + LSK+KAL +S
Sbjct: 64 SKGYAIVVFRGKDYARPSKLRPRNLLSKRKALARS 98
>gi|255551422|ref|XP_002516757.1| conserved hypothetical protein [Ricinus communis]
gi|223544130|gb|EEF45655.1| conserved hypothetical protein [Ricinus communis]
Length = 742
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 69/125 (55%), Gaps = 4/125 (3%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
+T EER +K+ K + + +GRRGVF GVI +H HWK E VKV Q+
Sbjct: 594 MTEEERECLRKIGLKMRSSLLLGRRGVFDGVIEGLHQHWKHREVVKVISLQRMFAQVIRT 653
Query: 102 AEEIARLSGGIPIQIIG---DDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLE 158
A+ + +GGI + I +I YRGKNY +P+ + + L+K+KAL +S Q +
Sbjct: 654 AKFLEAETGGILVSIDKLKEGHAIIIYRGKNYRRPQRLLN-NLLTKRKALCRSLEMQRIG 712
Query: 159 SVRRF 163
S+R F
Sbjct: 713 SLRFF 717
>gi|357521157|ref|XP_003630867.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
gi|355524889|gb|AET05343.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
Length = 676
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 68/129 (52%), Gaps = 3/129 (2%)
Query: 34 GPVVKPHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPS 93
GP + +T EER F+ + + Y+ + GVF VI NMH+HW++ E VK+ K
Sbjct: 517 GPDNRRETITDEERVMFRVVGLRLKVYLQLDTLGVFDSVIENMHLHWRQRELVKLITKQK 576
Query: 94 KPGQIHEFAEEIARLSGGIPIQII---GDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEK 150
+ E A + SGGI + I ++I+YRGK+Y +P + + L+K KAL+
Sbjct: 577 SLAFVEETASLLEYKSGGILVAIDRLPKGFSLIYYRGKDYKRPITLRHRNLLTKTKALQH 636
Query: 151 SKYEQSLES 159
S Q ES
Sbjct: 637 SISMQRHES 645
>gi|224127512|ref|XP_002329296.1| predicted protein [Populus trichocarpa]
gi|222870750|gb|EEF07881.1| predicted protein [Populus trichocarpa]
Length = 687
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 69/131 (52%), Gaps = 3/131 (2%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
+T EER F+K+ K + +GRRGVF GV+ +H HWK E VKV Q+
Sbjct: 528 MTEEERECFRKIGLKLRGSLVLGRRGVFEGVMEGLHQHWKHREVVKVITMQRVFSQVIHT 587
Query: 102 AEEIARLSGGIPIQIIG---DDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLE 158
A + S GI + + +I YRGKNY +P + + L+K++AL++S Q +
Sbjct: 588 ATLLEAESDGILVSVDKLKEGHAIIIYRGKNYKRPLRLLKKNLLTKREALKRSLLIQRVG 647
Query: 159 SVRRFIAMAEK 169
S++ F E+
Sbjct: 648 SLKYFANQRER 658
>gi|186523322|ref|NP_197122.2| ortholog of maize chloroplast splicing factor CRS1 [Arabidopsis
thaliana]
gi|374095377|sp|Q9LF10.2|CRS1_ARATH RecName: Full=Chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic; AltName: Full=Chloroplastic RNA
splicing factor 1; AltName: Full=Protein CHLOROPLAST RNA
SPLICING 1; Flags: Precursor
gi|332004875|gb|AED92258.1| ortholog of maize chloroplast splicing factor CRS1 [Arabidopsis
thaliana]
Length = 720
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 75/136 (55%), Gaps = 6/136 (4%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
LT EER +++ K ++ + +GRRGVF GV+ +H HWK E KV ++
Sbjct: 572 LTNEERECLRRIGLKMNSSLVLGRRGVFFGVMEGLHQHWKHREVAKVITMQKLFSRVVYT 631
Query: 102 AEEIARLSGGIPIQIIG---DDTVIFYRGKNYVQP--EIMSPIDTLSKKKALEKSKYEQS 156
A+ + S G+ I I ++ YRGKNY +P ++M+ + L+K+KAL++S Q
Sbjct: 632 AKALETESNGVLISIEKLKEGHAILIYRGKNYKRPSSKLMAQ-NLLTKRKALQRSVVMQR 690
Query: 157 LESVRRFIAMAEKELE 172
L S++ F E+ +E
Sbjct: 691 LGSLKFFAYQRERAIE 706
Score = 43.9 bits (102), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 64/137 (46%), Gaps = 6/137 (4%)
Query: 27 YEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETV 86
Y P + P +LT EE Y + +AQ + +GR G+ + W+K
Sbjct: 346 YMTPSRRCPPNTRAKLTDEELTYLRNIAQPLPFHFVLGRNYGLQGLASAIVKLWEKCIIA 405
Query: 87 KVFCK-PSKPGQIHEFAEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEIMSPIDT---- 141
K+ K + E A+E+ L+GG+ I + ++ YRGK+++ E+ ++
Sbjct: 406 KIAIKWGALNTNNEEMADELRYLTGGVLI-LRNKYLIVLYRGKDFLSDEVADLVEDRERL 464
Query: 142 LSKKKALEKSKYEQSLE 158
LS+ + E++K E +E
Sbjct: 465 LSRYQHFEETKRESDIE 481
>gi|9755828|emb|CAC01859.1| putative protein [Arabidopsis thaliana]
Length = 718
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 75/136 (55%), Gaps = 6/136 (4%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
LT EER +++ K ++ + +GRRGVF GV+ +H HWK E KV ++
Sbjct: 570 LTNEERECLRRIGLKMNSSLVLGRRGVFFGVMEGLHQHWKHREVAKVITMQKLFSRVVYT 629
Query: 102 AEEIARLSGGIPIQIIG---DDTVIFYRGKNYVQP--EIMSPIDTLSKKKALEKSKYEQS 156
A+ + S G+ I I ++ YRGKNY +P ++M+ + L+K+KAL++S Q
Sbjct: 630 AKALETESNGVLISIEKLKEGHAILIYRGKNYKRPSSKLMAQ-NLLTKRKALQRSVVMQR 688
Query: 157 LESVRRFIAMAEKELE 172
L S++ F E+ +E
Sbjct: 689 LGSLKFFAYQRERAIE 704
Score = 43.9 bits (102), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 64/137 (46%), Gaps = 6/137 (4%)
Query: 27 YEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETV 86
Y P + P +LT EE Y + +AQ + +GR G+ + W+K
Sbjct: 344 YMTPSRRCPPNTRAKLTDEELTYLRNIAQPLPFHFVLGRNYGLQGLASAIVKLWEKCIIA 403
Query: 87 KVFCK-PSKPGQIHEFAEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEIMSPIDT---- 141
K+ K + E A+E+ L+GG+ I + ++ YRGK+++ E+ ++
Sbjct: 404 KIAIKWGALNTNNEEMADELRYLTGGVLI-LRNKYLIVLYRGKDFLSDEVADLVEDRERL 462
Query: 142 LSKKKALEKSKYEQSLE 158
LS+ + E++K E +E
Sbjct: 463 LSRYQHFEETKRESDIE 479
>gi|168014862|ref|XP_001759970.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162688720|gb|EDQ75095.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 512
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 66/129 (51%), Gaps = 18/129 (13%)
Query: 40 HELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPS-----K 94
++T EE + +K+ + Y+ +GRR VF GVI NMH+HWK + VK+ K S +
Sbjct: 343 EDVTEEEMYTLRKIGLRMKPYLLLGRREVFSGVIENMHLHWKWRQLVKIIVKKSYFMYRE 402
Query: 95 PGQIHEFAEEIARLSGGIPIQIIG---DDTVIFYRGKNYVQ----------PEIMSPIDT 141
I A + SGG+ + I + +I YRGKNY + P+ + P
Sbjct: 403 RDDIENIARMLEIESGGVLVGICTIPVGEAIIVYRGKNYQRPNDGISPQGHPDGLRPCGL 462
Query: 142 LSKKKALEK 150
L+KK+A E+
Sbjct: 463 LTKKQAWER 471
>gi|147838476|emb|CAN69859.1| hypothetical protein VITISV_037991 [Vitis vinifera]
Length = 371
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 62/113 (54%), Gaps = 5/113 (4%)
Query: 54 AQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIP 113
Q++ +Y GRRGVF GVI +H HWK E VKV Q+ A+ + SGG+
Sbjct: 111 GQEQGDY--FGRRGVFDGVIEGLHQHWKHREIVKVITMQRSFSQVLYTAKLLESESGGVL 168
Query: 114 IQIIG---DDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRF 163
+ I +I YRGKNY +P + P + L+K++AL +S Q + S++ F
Sbjct: 169 VSIDKLKEGHAIIIYRGKNYRRPIKLVPKNLLTKREALNRSLEMQRIGSLKFF 221
>gi|357454755|ref|XP_003597658.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
gi|355486706|gb|AES67909.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
Length = 880
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 77/160 (48%), Gaps = 19/160 (11%)
Query: 11 RKASALNKFL---SLRLKRYEVP-KVQGPVVKPHELTGEERFYFKKMAQK-RSNYV---- 61
RKA LNK + ++ L + K G + +T EER F+KM K RS V
Sbjct: 629 RKAFILNKKIERSTMELSKLNAAWKPSGEDIDLEIMTDEERECFRKMGLKMRSCLVLGKA 688
Query: 62 -------PIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPI 114
GRRGVF GV+ +H HWK E KV ++ ++ + R SGGI +
Sbjct: 689 ISLHSTTSAGRRGVFDGVLEGLHQHWKHREVAKVITMQRLISRVIYTSQFLERESGGILV 748
Query: 115 ---QIIGDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKS 151
Q+ +I YRGKNY +P + L+K+KAL +S
Sbjct: 749 SVDQLKEGYAIIIYRGKNYSRPSEKIAKNLLTKRKALRRS 788
Score = 37.4 bits (85), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 7/109 (6%)
Query: 29 VPKVQGP--VVKPH---ELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKH 83
VP + P + PH +LT E YF++++ + +GR G+ + W K
Sbjct: 431 VPGFEPPLRICPPHASAKLTDGELTYFRRISHPLPTHFVLGRNRGLQGLAAAILKLWHKS 490
Query: 84 ETVKVFCKPSKPGQIHE-FAEEIARLSGGIPIQIIGDDTVIFYRGKNYV 131
K+ K +E A E+ RL+GG+ + + ++ YRGK+++
Sbjct: 491 HIAKIAIKYGVQNTDNETMANELKRLTGGV-LLLRNKFYILLYRGKDFL 538
>gi|302759655|ref|XP_002963250.1| hypothetical protein SELMODRAFT_404989 [Selaginella moellendorffii]
gi|300168518|gb|EFJ35121.1| hypothetical protein SELMODRAFT_404989 [Selaginella moellendorffii]
Length = 274
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 64/108 (59%), Gaps = 2/108 (1%)
Query: 24 LKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKH 83
L+ Y+ P+ PV P L+ E K+ + +++ IG+RGV+ G I +++ HW H
Sbjct: 83 LQEYDFPE-DKPVHDPEYLSPEFMTALKERNRCIDDFLTIGKRGVWEGFIRDIYSHWINH 141
Query: 84 ETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDD-TVIFYRGKNY 130
ET++++C+ ++ AE++AR+SG + I + + + I YRG+N+
Sbjct: 142 ETLRIYCEGYPLRKLRPMAEKVARMSGAVVIAVTEETMSFILYRGRNF 189
>gi|302781424|ref|XP_002972486.1| hypothetical protein SELMODRAFT_412905 [Selaginella moellendorffii]
gi|300159953|gb|EFJ26572.1| hypothetical protein SELMODRAFT_412905 [Selaginella moellendorffii]
Length = 795
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 45/75 (60%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
+T EER+ FKK+ + ++ IGRRGVF GVI NMH+HWK E VK+ K E
Sbjct: 602 ITEEERYMFKKLGLRMDAFLLIGRRGVFDGVIENMHLHWKHRELVKLILKEKDKAIALEV 661
Query: 102 AEEIARLSGGIPIQI 116
A+ + SGGI + +
Sbjct: 662 AKMLEIESGGILVGV 676
>gi|297807647|ref|XP_002871707.1| ATCRS1/CRS1 [Arabidopsis lyrata subsp. lyrata]
gi|297317544|gb|EFH47966.1| ATCRS1/CRS1 [Arabidopsis lyrata subsp. lyrata]
Length = 727
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 63/115 (54%), Gaps = 6/115 (5%)
Query: 63 IGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIG---D 119
+GRRGVF G++ +H HWK E KV ++ A+ + S G+ I I
Sbjct: 600 LGRRGVFVGIMEGLHQHWKHREVAKVITMQKIFSRVVYTAKSLEAESNGVLISIEKLKEG 659
Query: 120 DTVIFYRGKNYVQP--EIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKELE 172
++ YRGKNY +P ++M+ + L+K+KAL++S Q L S++ F E+ +E
Sbjct: 660 HAILIYRGKNYKRPSSKLMAQ-NLLTKRKALQRSVAMQRLGSLKFFAYQRERVIE 713
Score = 43.9 bits (102), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 2/115 (1%)
Query: 27 YEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETV 86
Y P + P +L+ EE Y + +AQ + +GR G+ + W+K
Sbjct: 319 YRTPSRRCPPNTRAKLSDEELTYLRNIAQALPFHFVLGRNHGLQGLASAIVKLWEKCIIA 378
Query: 87 KVFCK-PSKPGQIHEFAEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEIMSPID 140
K+ K + E A+E+ L+GG+ I + +I YRGK+++ E+ +D
Sbjct: 379 KIAIKWGALNTNNEEMADELKHLTGGVLI-LRNKYLIILYRGKDFLSDEVTDLVD 432
>gi|297603821|ref|NP_001054631.2| Os05g0145300 [Oryza sativa Japonica Group]
gi|255676015|dbj|BAF16545.2| Os05g0145300, partial [Oryza sativa Japonica Group]
Length = 92
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 49/72 (68%)
Query: 19 FLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHM 78
L +LK+YE+P + P P LT E+ +KK+ + NYVP+G RGVFGGV+ NMHM
Sbjct: 17 LLLQKLKKYELPDLPAPRHDPELLTAEQLQAYKKIGFRNRNYVPVGVRGVFGGVVQNMHM 76
Query: 79 HWKKHETVKVFC 90
HWK HETV+V C
Sbjct: 77 HWKFHETVQVCC 88
>gi|399924152|ref|ZP_10781510.1| RNA binding protein [Peptoniphilus rhinitidis 1-13]
Length = 95
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
LTG+ER Y K +A + +G+ G+ G + + + + HE VK+ + P ++ E
Sbjct: 2 LTGKERAYLKSLAHNMDPLIQLGKDGINDGFLKQIDILLEDHEIVKINVLQNAPVEVDEI 61
Query: 102 AEEIARLSGGIPIQIIGDDTVIFYRGK 128
+EI +G +Q IG I+ K
Sbjct: 62 VDEILDATGAEFVQKIGKKLTIYRESK 88
>gi|302754228|ref|XP_002960538.1| hypothetical protein SELMODRAFT_402884 [Selaginella moellendorffii]
gi|300171477|gb|EFJ38077.1| hypothetical protein SELMODRAFT_402884 [Selaginella moellendorffii]
Length = 961
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 97 QIHEFAEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEIMSP--IDTLSKKKALEKSKYE 154
+ E+ARLSGGI + ++ D TVI +RGKNY PE + P ++ + ++ A + +
Sbjct: 164 ETRRIGAELARLSGGIVLDVLEDRTVIMFRGKNYQTPEELYPPTLEAVDRRNADSRHHIQ 223
Query: 155 QSLES 159
++L+S
Sbjct: 224 RALDS 228
>gi|350566233|ref|ZP_08934922.1| RNA-binding protein YhbY [Peptoniphilus indolicus ATCC 29427]
gi|348662982|gb|EGY79606.1| RNA-binding protein YhbY [Peptoniphilus indolicus ATCC 29427]
Length = 95
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
LTG++R Y K +A + + +G+ G+ GV+ + + HE VK+ + P + E
Sbjct: 2 LTGKQRSYLKSIANTLNPLIQVGKGGIGDGVLSQIDKSLEDHELVKITVLKNSPVEAREI 61
Query: 102 AEEIARLSGGIPIQIIGDDTVIFYRGK 128
EEI + +Q IG+ I+ K
Sbjct: 62 VEEILDATNAEFVQQIGNKLTIYRESK 88
>gi|154986385|gb|ABS89146.1| CFM2 alternative polyadenylation form 1 [Zea mays]
Length = 668
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 63 IGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTV 122
+G+ G+ G++ +H W+ E VK+ C+ + E + R +GG+ I G T+
Sbjct: 151 VGKAGITEGIVNGIHERWRNAEVVKLRCEDVWAMNMRRTHEILERKTGGLVIWRSG-STI 209
Query: 123 IFYRGKNYVQP 133
I YRG NY P
Sbjct: 210 ILYRGTNYTYP 220
Score = 43.1 bits (100), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 2/107 (1%)
Query: 35 PVVKPHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSK 94
P P +LT E +++A + +GR G+ +M W++ E K+ K
Sbjct: 413 PSGVPPKLTDREMTILRRLAHALPFHYALGRSSNLQGLAASMIKLWERCEVAKIALKRDA 472
Query: 95 PGQIHEF-AEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEIMSPID 140
E EE+ L+GG + ++++FYRGK+++ P + I+
Sbjct: 473 HNTDSELITEEVKELTGGTLLS-RDKESIVFYRGKDFLPPAVSLAIE 518
>gi|413918578|gb|AFW58510.1| CFM2 alternative polyadenylation form 1 [Zea mays]
Length = 681
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 63 IGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTV 122
+G+ G+ G++ +H W+ E VK+ C+ + E + R +GG+ I G T+
Sbjct: 164 VGKAGITEGIVNGIHERWRNAEVVKLRCEDVWAMNMRRTHEILERKTGGLVIWRSG-STI 222
Query: 123 IFYRGKNYVQP 133
I YRG NY P
Sbjct: 223 ILYRGTNYTYP 233
Score = 43.1 bits (100), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 48/102 (47%), Gaps = 2/102 (1%)
Query: 35 PVVKPHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSK 94
P P +LT E +++A + +GR G+ +M W++ E K+ K
Sbjct: 426 PSGVPPKLTDREMTILRRLAHALPFHYALGRSSNLQGLAASMIKLWERCEVAKIALKRDA 485
Query: 95 PGQIHEF-AEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEI 135
E EE+ L+GG + ++++FYRGK+++ P +
Sbjct: 486 HNTDSELITEEVKELTGGTLLS-RDKESIVFYRGKDFLPPAV 526
>gi|242082009|ref|XP_002445773.1| hypothetical protein SORBIDRAFT_07g025550 [Sorghum bicolor]
gi|241942123|gb|EES15268.1| hypothetical protein SORBIDRAFT_07g025550 [Sorghum bicolor]
Length = 674
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
LT EE F K + K + +GR G+ ++ N+H HWK+ K+ CK +
Sbjct: 185 LTKEEVFELVKGSLKTKRQLNMGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTVDMDNI 244
Query: 102 AEEIARLSGGIPIQIIGDDTVIFYRGKNY 130
+++ GG I G + +RG+NY
Sbjct: 245 CQQLEEKVGGKVIHRQG-GVIFLFRGRNY 272
>gi|313888400|ref|ZP_07822068.1| RNA-binding protein, YhbY family [Peptoniphilus harei
ACS-146-V-Sch2b]
gi|312845597|gb|EFR32990.1| RNA-binding protein, YhbY family [Peptoniphilus harei
ACS-146-V-Sch2b]
Length = 95
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
LTG+ER Y K +A + +G+ G+ G + + + HE VK+ + P ++ E
Sbjct: 2 LTGKERSYLKSLAHNMDPLIQLGKDGINEGFLSQIDKLLEDHEIVKINVLQNAPVEVDEI 61
Query: 102 AEEIARLSGGIPIQIIGDDTVIFYRGK 128
++I +G +Q IG I+ K
Sbjct: 62 VDDILDATGAEFVQKIGKKLTIYRESK 88
>gi|406888285|gb|EKD34815.1| hypothetical protein ACD_75C02178G0007 [uncultured bacterium]
Length = 115
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 44/83 (53%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
LT ++ + K +A S V IG+ G+ G++ ++ HE +KV + + H
Sbjct: 12 LTTRQKQFLKGLAHPLSPLVQIGKEGMSQGIVNTINAELLNHELIKVKIGNNSGLEKHTT 71
Query: 102 AEEIARLSGGIPIQIIGDDTVIF 124
++E A L+G I +Q+IG V++
Sbjct: 72 SQEAAELTGSILVQLIGKTFVLY 94
>gi|326525845|dbj|BAJ93099.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 607
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
LT E K + + IGR G+ ++ +H HW++ E KV C+ ++
Sbjct: 232 LTSAETRELVKPHMSHNRQLNIGRDGLTHNMLEMIHCHWRRQEVCKVRCRGVPTVDMNNL 291
Query: 102 AEEIARLSGGIPIQIIGDDTVIFYRGKNY 130
+ SGG I+ +G V YRG+NY
Sbjct: 292 CYHLEEKSGGKVIKRVG-GVVFLYRGRNY 319
>gi|115436730|ref|NP_001043122.1| Os01g0495900 [Oryza sativa Japonica Group]
gi|75109409|sp|Q5VMQ5.1|CAF1P_ORYSJ RecName: Full=CRS2-associated factor 1, chloroplastic; AltName:
Full=Chloroplastic group IIA intron splicing facilitator
CRS2-associated factor 1; Flags: Precursor
gi|55297418|dbj|BAD69270.1| putative CRS2-associated factor 1 [Oryza sativa Japonica Group]
gi|55297612|dbj|BAD68987.1| putative CRS2-associated factor 1 [Oryza sativa Japonica Group]
gi|113532653|dbj|BAF05036.1| Os01g0495900 [Oryza sativa Japonica Group]
gi|215694476|dbj|BAG89423.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222618506|gb|EEE54638.1| hypothetical protein OsJ_01906 [Oryza sativa Japonica Group]
Length = 701
Score = 45.1 bits (105), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 3/112 (2%)
Query: 19 FLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHM 78
FL+ RY+ + + +P LT EE K K + IGR G+ ++ N+H
Sbjct: 164 FLAGTEPRYQAASREEVLGEP--LTKEEVDELVKATLKTKRQLNIGRDGLTHNMLENIHS 221
Query: 79 HWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTVIFYRGKNY 130
HWK+ K+ CK + +++ GG I G + +RG+NY
Sbjct: 222 HWKRKRVCKIKCKGVCTVDMDNVCQQLEEKVGGKVIHHQG-GVIFLFRGRNY 272
>gi|218188278|gb|EEC70705.1| hypothetical protein OsI_02075 [Oryza sativa Indica Group]
Length = 701
Score = 45.1 bits (105), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 3/112 (2%)
Query: 19 FLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHM 78
FL+ RY+ + + +P LT EE K K + IGR G+ ++ N+H
Sbjct: 164 FLAGTEPRYQAASREEVLGEP--LTKEEVDELVKATLKTKRQLNIGRDGLTHNMLENIHS 221
Query: 79 HWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTVIFYRGKNY 130
HWK+ K+ CK + +++ GG I G + +RG+NY
Sbjct: 222 HWKRKRVCKIKCKGVCTVDMDNVCQQLEEKVGGKVIHHQG-GVIFLFRGRNY 272
>gi|385800115|ref|YP_005836519.1| hypothetical protein [Halanaerobium praevalens DSM 2228]
gi|309389479|gb|ADO77359.1| protein of unknown function UPF0044 [Halanaerobium praevalens DSM
2228]
Length = 95
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 39/83 (46%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
LTG+ R Y + A + V +G+ G+ VI + HE +KV S
Sbjct: 2 LTGKNRSYLRSEANSLNPIVHVGKDGITESVIEQLDSALADHELLKVRILESTGRTTRSA 61
Query: 102 AEEIARLSGGIPIQIIGDDTVIF 124
AEE+A +G +Q+IG V+F
Sbjct: 62 AEELATATGAELVQVIGGIAVLF 84
>gi|356527769|ref|XP_003532480.1| PREDICTED: CRS2-associated factor 1, chloroplastic-like [Glycine
max]
Length = 723
Score = 44.7 bits (104), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
LT EE K K + IGR G+ ++ N+H HWK+ K+ CK +
Sbjct: 201 LTQEEIRDLVKSCMKAQRQLNIGRDGLTHNMLDNIHAHWKRRRACKIRCKGVCTVDMDNV 260
Query: 102 AEEIARLSGGIPIQIIGDDTVIFYRGKNY 130
++ +GG I G + +RG+NY
Sbjct: 261 CHQLEERTGGKIIHRKG-GVLYLFRGRNY 288
>gi|356495236|ref|XP_003516485.1| PREDICTED: CRS2-associated factor 1, chloroplastic-like [Glycine
max]
Length = 705
Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 11/108 (10%)
Query: 31 KVQGPVVKPHE------LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHE 84
++ GPV + + LT +E K +K S + IGR G+ ++ N+H +W +
Sbjct: 222 RLAGPVWESRDEVLGEPLTKDEINRLIKATEKSSRQLNIGRDGLTHNMLENIHTYWMRRS 281
Query: 85 TVKVFCKPSKPGQIHEFAEEIARLSGGIPIQII--GDDTVIFYRGKNY 130
K+ C+ + +++ +GG +II TV +RGKNY
Sbjct: 282 ACKIKCRGVCTVDMDNVCQQLEERTGG---KIIYRQAGTVYLFRGKNY 326
>gi|326525102|dbj|BAK07821.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 443
Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Query: 42 LTGEERFYFKKMAQKRSN--YVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIH 99
LT ER + + QK + +GR G+ ++ ++H HWK E V+V C +
Sbjct: 163 LTPAERSFLVEKCQKNRTKRQINLGRDGLTHNMLNDIHNHWKHGEGVRVKCLGVPTVDMQ 222
Query: 100 EFAEEIARLSGGIPIQIIGDDTVIFYRGKNY 130
E+ +GG+ I G +I YRG++Y
Sbjct: 223 NVCHELEDKTGGLIIHRHG-GQLILYRGRHY 252
>gi|357144801|ref|XP_003573418.1| PREDICTED: CRS2-associated factor 1, mitochondrial-like
[Brachypodium distachyon]
Length = 437
Score = 44.3 bits (103), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 42 LTGEER-FYFKKMAQKRSN-YVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIH 99
LT ER F K + R+ V +GR G+ ++ ++H HWK E V+V C +
Sbjct: 158 LTPAERTFVVDKCQRNRTKRQVNLGRDGLTHNMLNDIHNHWKHGEAVRVKCLGVPTVDMQ 217
Query: 100 EFAEEIARLSGGIPIQIIGDDTVIFYRGKNY 130
E+ +GG+ I G +I YRG++Y
Sbjct: 218 NVCHELEDKTGGLIIHRHG-GQLILYRGRHY 247
>gi|259047029|ref|ZP_05737430.1| RNA-binding protein YhbY [Granulicatella adiacens ATCC 49175]
gi|259036348|gb|EEW37603.1| RNA-binding protein YhbY [Granulicatella adiacens ATCC 49175]
Length = 108
Score = 44.3 bits (103), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%)
Query: 41 ELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHE 100
EL G+ER +FKK A IG+ G+ +I + +K E +KV + + E
Sbjct: 2 ELKGKERQFFKKEAHSLKPIFQIGKGGLSEEMIHQIQNAVEKRELIKVTLLQNTLEEPQE 61
Query: 101 FAEEIARLSGGIPIQIIGDDTVIFYRGKN 129
AE IA +G IQ+IG V++ +N
Sbjct: 62 AAETIAEATGSTIIQVIGHTIVLYKEARN 90
>gi|299144204|ref|ZP_07037284.1| probable RNA-binding protein YqeI [Peptoniphilus sp. oral taxon 386
str. F0131]
gi|298518689|gb|EFI42428.1| probable RNA-binding protein YqeI [Peptoniphilus sp. oral taxon 386
str. F0131]
Length = 95
Score = 44.3 bits (103), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
+TG +R Y K +A + + +G+ GV +I + + HE VK+ + P E
Sbjct: 2 ITGRQRSYLKSLANTLNPLLQVGKNGVTENLIKQIDELLEYHELVKITVLKNSPVYAREI 61
Query: 102 AEEIARLSGGIPIQIIGDDTVIFYRGK 128
EEI +G +Q IG+ I+ K
Sbjct: 62 VEEILEQTGAEFVQQIGNKLTIYRESK 88
>gi|222618317|gb|EEE54449.1| hypothetical protein OsJ_01538 [Oryza sativa Japonica Group]
Length = 587
Score = 44.3 bits (103), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 63 IGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTV 122
IGR G+ ++ +H HW++ E KV C+ + + SGG I +G V
Sbjct: 231 IGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMKNLCYHLEEKSGGKVIHRVG-GVV 289
Query: 123 IFYRGKNY 130
YRG+NY
Sbjct: 290 FLYRGRNY 297
>gi|125602364|gb|EAZ41689.1| hypothetical protein OsJ_26223 [Oryza sativa Japonica Group]
Length = 615
Score = 44.3 bits (103), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 42 LTGEERFYFKKMAQKRSN--YVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIH 99
LT ER + QK + +GR G+ ++ ++H HWK E V+V C +
Sbjct: 133 LTPAERAFLVSKCQKSRTKKQINLGRDGLTHNMLNDIHNHWKNDEAVRVKCLGVPTVDMQ 192
Query: 100 EFAEEIARLSGGIPIQIIGDDTVIFYRGKNY 130
++ +GG+ I G +I YRG++Y
Sbjct: 193 NVCHQLEDKTGGLIIHRHG-GQLILYRGRHY 222
Score = 40.0 bits (92), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 64 GRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTVI 123
GR G+ ++ ++H HWK E V+V C + ++ +GG+ I G +I
Sbjct: 368 GRDGLTHNMLNDIHNHWKNDEAVRVKCLGVPTVDMQNVCHQLEDKTGGLIIHRHG-GQLI 426
Query: 124 FYRGKNY 130
YRG++Y
Sbjct: 427 LYRGRHY 433
>gi|125525663|gb|EAY73777.1| hypothetical protein OsI_01650 [Oryza sativa Indica Group]
Length = 609
Score = 44.3 bits (103), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 63 IGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTV 122
IGR G+ ++ +H HW++ E KV C+ + + SGG I +G V
Sbjct: 253 IGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMKNLCYHLEEKSGGKVIHRVG-GVV 311
Query: 123 IFYRGKNY 130
YRG+NY
Sbjct: 312 FLYRGRNY 319
>gi|115436276|ref|NP_001042896.1| Os01g0323300 [Oryza sativa Japonica Group]
gi|75115027|sp|Q657G7.1|CAF2P_ORYSJ RecName: Full=CRS2-associated factor 2, chloroplastic; AltName:
Full=Chloroplastic group IIA intron splicing facilitator
CRS2-associated factor 2; Flags: Precursor
gi|52075771|dbj|BAD44991.1| putative CRS2-associated factor 2 [Oryza sativa Japonica Group]
gi|52076260|dbj|BAD45045.1| putative CRS2-associated factor 2 [Oryza sativa Japonica Group]
gi|113532427|dbj|BAF04810.1| Os01g0323300 [Oryza sativa Japonica Group]
Length = 607
Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 63 IGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTV 122
IGR G+ ++ +H HW++ E KV C+ + + SGG I +G V
Sbjct: 251 IGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMKNLCYHLEEKSGGKVIHRVG-GVV 309
Query: 123 IFYRGKNY 130
YRG+NY
Sbjct: 310 FLYRGRNY 317
>gi|357132021|ref|XP_003567631.1| PREDICTED: CRS2-associated factor 2, chloroplastic-like
[Brachypodium distachyon]
Length = 607
Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 63 IGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTV 122
IGR G+ ++ +H HW++ E KV C+ + + SGG I +G V
Sbjct: 254 IGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMKNLCYHLEEKSGGKVIHRVG-GVV 312
Query: 123 IFYRGKNY 130
YRG+NY
Sbjct: 313 FLYRGRNY 320
>gi|115475027|ref|NP_001061110.1| Os08g0174900 [Oryza sativa Japonica Group]
gi|75133775|sp|Q6Z4U2.1|CAF1M_ORYSJ RecName: Full=CRS2-associated factor 1, mitochondrial; Flags:
Precursor
gi|40253285|dbj|BAD05220.1| putative CRS2-associated factor 1 [Oryza sativa Japonica Group]
gi|40253602|dbj|BAD05547.1| putative CRS2-associated factor 1 [Oryza sativa Japonica Group]
gi|113623079|dbj|BAF23024.1| Os08g0174900 [Oryza sativa Japonica Group]
gi|125560323|gb|EAZ05771.1| hypothetical protein OsI_28005 [Oryza sativa Indica Group]
Length = 428
Score = 43.9 bits (102), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 42 LTGEERFYFKKMAQKRSN--YVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIH 99
LT ER + QK + +GR G+ ++ ++H HWK E V+V C +
Sbjct: 157 LTPAERAFLVSKCQKSRTKKQINLGRDGLTHNMLNDIHNHWKNDEAVRVKCLGVPTVDMQ 216
Query: 100 EFAEEIARLSGGIPIQIIGDDTVIFYRGKNY 130
++ +GG+ I G +I YRG++Y
Sbjct: 217 NVCHQLEDKTGGLIIHRHG-GQLILYRGRHY 246
>gi|383453083|ref|YP_005367072.1| hypothetical protein COCOR_01066 [Corallococcus coralloides DSM
2259]
gi|380727846|gb|AFE03848.1| hypothetical protein COCOR_01066 [Corallococcus coralloides DSM
2259]
Length = 118
Score = 43.9 bits (102), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
LTG+ER + + + V +G GV GVI + HE +KV G+ HE
Sbjct: 3 LTGKERRHLRALGHHLEPVVIVGSSGVTEGVIAAVEQALNDHELIKVKINEGPEGR-HEG 61
Query: 102 AEEIARLSGGIPIQIIGDDTVIFYRGKN 129
A+ IA +G Q++G + F R K
Sbjct: 62 ADSIAEATGSELAQLLGRTALFFKRRKQ 89
>gi|357132246|ref|XP_003567742.1| PREDICTED: CRS2-associated factor 1, chloroplastic-like
[Brachypodium distachyon]
Length = 702
Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
L+ EE K K + IGR G+ ++ N+H HWK+ K+ CK +
Sbjct: 183 LSKEEVAELVKGNLKAKRQLNIGRDGLTHNMLENIHAHWKRKRVCKIKCKGVCTVDMDNV 242
Query: 102 AEEIARLSGGIPIQIIGDDTVIFYRGKNY 130
+++ GG I G V +RG+NY
Sbjct: 243 CQQLEERVGGKVIHRQG-GVVFLFRGRNY 270
>gi|293400787|ref|ZP_06644932.1| probable RNA-binding protein YqeI [Erysipelotrichaceae bacterium
5_2_54FAA]
gi|373451899|ref|ZP_09543817.1| YhbY family putative RNA-binding protein [Eubacterium sp. 3_1_31]
gi|291305813|gb|EFE47057.1| probable RNA-binding protein YqeI [Erysipelotrichaceae bacterium
5_2_54FAA]
gi|371967331|gb|EHO84802.1| YhbY family putative RNA-binding protein [Eubacterium sp. 3_1_31]
Length = 94
Score = 43.9 bits (102), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
LT +++ + +AQ R IG+ GV +I + + HE VKV + P + E
Sbjct: 2 LTSKDKKTLRSIAQTRKALFQIGKDGVTLNMIKTISDSLEAHELVKVSLLKTCPLSVQEA 61
Query: 102 AEEIARLSGGIPIQIIGDDTVIFYR 126
A +IA + +Q IG TVIFYR
Sbjct: 62 ALDIAGGTRSEVVQTIG-RTVIFYR 85
>gi|375309510|ref|ZP_09774791.1| protein of unknown function UPF0044 [Paenibacillus sp. Aloe-11]
gi|375078819|gb|EHS57046.1| protein of unknown function UPF0044 [Paenibacillus sp. Aloe-11]
Length = 98
Score = 43.9 bits (102), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 49/94 (52%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
LTG+++ Y + MA +G+ G ++ +++ +K E +KV + HE
Sbjct: 2 LTGKQKRYLRSMAHHLDPVFQVGKNGTNEHLMRHINDAIEKRELMKVQILNNCLDDKHEI 61
Query: 102 AEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEI 135
AEE+A +G +QIIG +++ +++ Q E+
Sbjct: 62 AEELATETGSELVQIIGSTIILYKESRDHKQIEL 95
>gi|335040464|ref|ZP_08533592.1| RNA-binding, CRM domain containing protein [Caldalkalibacillus
thermarum TA2.A1]
gi|334179653|gb|EGL82290.1| RNA-binding, CRM domain containing protein [Caldalkalibacillus
thermarum TA2.A1]
Length = 96
Score = 43.5 bits (101), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 47/94 (50%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
LTG+++ Y + +A + +G+ GV ++ + K E +KV + HE
Sbjct: 2 LTGKQKRYLRSLAHHLNPIFQVGKGGVNDNMLQQIKDALKARELIKVSVLQNCEQDKHEV 61
Query: 102 AEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEI 135
AEE+A+ +G +Q+IG V++ + Q E+
Sbjct: 62 AEELAKGTGAELVQVIGKQIVLYKESEENKQIEL 95
>gi|260584201|ref|ZP_05851949.1| RNA-binding protein YqeI [Granulicatella elegans ATCC 700633]
gi|260158827|gb|EEW93895.1| RNA-binding protein YqeI [Granulicatella elegans ATCC 700633]
Length = 108
Score = 43.5 bits (101), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%)
Query: 41 ELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHE 100
EL G+ER +FKK A IG+ G+ +I + +K E +KV + + E
Sbjct: 2 ELKGKERQFFKKEAHSIKPIFQIGKGGLSEEMIQQIQFAIEKRELIKVSLLQNTMEEPQE 61
Query: 101 FAEEIARLSGGIPIQIIGDDTVIFYRGKN 129
AE +A +G IQ+IG V++ + +N
Sbjct: 62 AAEVLAEQTGSTIIQVIGHTIVLYKQARN 90
>gi|194688996|gb|ACF78582.1| unknown [Zea mays]
gi|194700546|gb|ACF84357.1| unknown [Zea mays]
gi|223974875|gb|ACN31625.1| unknown [Zea mays]
Length = 560
Score = 43.1 bits (100), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
LT EE K + K + +GR G+ ++ N+H HWK+ K+ CK +
Sbjct: 71 LTKEEVSELVKGSLKSKRQLNMGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTIDMDNI 130
Query: 102 AEEIARLSGGIPIQIIGDDTVIFYRGKNY 130
++ GG I G + +RG+NY
Sbjct: 131 CHQLEEKVGGKVIHRQG-GVIFLFRGRNY 158
>gi|220932245|ref|YP_002509153.1| hypothetical protein Hore_14090 [Halothermothrix orenii H 168]
gi|219993555|gb|ACL70158.1| conserved hypothetical protein TIGR00253 [Halothermothrix orenii H
168]
Length = 96
Score = 42.7 bits (99), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 43/87 (49%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
LTG++R Y + A + + IG+ G+ ++ + HE +K + G+ F
Sbjct: 2 LTGKQRSYLRSEANNLNPVIHIGKDGITPSLLNQVDAALDDHELIKCRVLKNSLGEPRSF 61
Query: 102 AEEIARLSGGIPIQIIGDDTVIFYRGK 128
A+EI+ +Q+IG+ V+F R +
Sbjct: 62 ADEISSQLNCDVVQVIGNVFVLFRRNE 88
>gi|375336636|ref|ZP_09777980.1| hypothetical protein SbacW_06573 [Succinivibrionaceae bacterium
WG-1]
Length = 99
Score = 42.7 bits (99), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%)
Query: 41 ELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHE 100
ELT ++ Y K AQ+ V IG+ G+ VI + + HE +KV Q E
Sbjct: 2 ELTTKQLNYLKLKAQELKPVVMIGKNGITENVINEIKSSIEHHELIKVKAHVEDRTQKEE 61
Query: 101 FAEEIARLSGGIPIQIIGDDTVIFYRGK 128
A +A S +Q +G++ +F + K
Sbjct: 62 LANYLANASESTVVQYLGNNITLFKKAK 89
>gi|310643104|ref|YP_003947862.1| dihydrodipicolinate reductase [Paenibacillus polymyxa SC2]
gi|309248054|gb|ADO57621.1| dihydrodipicolinate reductase [Paenibacillus polymyxa SC2]
gi|392303904|emb|CCI70267.1| CRS2-associated factor 1 [Paenibacillus polymyxa M1]
Length = 98
Score = 42.7 bits (99), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 49/94 (52%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
LTG+++ Y + MA +G+ G ++ +++ +K E +KV + HE
Sbjct: 2 LTGKQKRYLRSMAHHLDPVFQVGKNGTNEHLMRHINDAIEKRELMKVQILNNCLDDKHEI 61
Query: 102 AEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEI 135
AEE+A +G +Q+IG +++ +++ Q E+
Sbjct: 62 AEELAAETGSELVQLIGSTIILYKESRDHKQIEL 95
>gi|162452193|ref|YP_001614560.1| hypothetical protein sce3920 [Sorangium cellulosum So ce56]
gi|161162775|emb|CAN94080.1| hypothetical protein sce3920 [Sorangium cellulosum So ce56]
Length = 100
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 53/99 (53%), Gaps = 4/99 (4%)
Query: 41 ELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHE 100
+LTG++R + + + V +G+ G+ GV+ + ++HE VKV P ++ +
Sbjct: 2 DLTGKQRRHLRALGHHLDPVVQLGKAGLTDGVVAAVDAALERHELVKVRLGTECPDELDD 61
Query: 101 FAEEIA-RLSGGIPIQIIGDDTVIFYRGKNYVQPEIMSP 138
A+ ++ RL + Q +G T++ YR ++ +P+I P
Sbjct: 62 VADTLSERLRAAVA-QTLG-RTILLYR-RHPKEPKIKLP 97
>gi|162462028|ref|NP_001105220.1| CRS2-associated factor 1, chloroplastic precursor [Zea mays]
gi|75147312|sp|Q84N49.1|CAF1P_MAIZE RecName: Full=CRS2-associated factor 1, chloroplastic; AltName:
Full=Chloroplastic group IIA intron splicing facilitator
CRS2-associated factor 1; Flags: Precursor
gi|30349367|gb|AAP22135.1| CRS2-associated factor 1 [Zea mays]
Length = 674
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
LT EE K + K + +GR G+ ++ N+H HWK+ K+ CK +
Sbjct: 185 LTKEEVSELVKGSLKSKRQLNMGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTIDMDNI 244
Query: 102 AEEIARLSGGIPIQIIGDDTVIFYRGKNY 130
++ GG I G + +RG+NY
Sbjct: 245 CHQLEEKVGGKVIHRQG-GVIFLFRGRNY 272
>gi|194697426|gb|ACF82797.1| unknown [Zea mays]
Length = 611
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 63 IGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTV 122
IGR G+ ++ +H HW++ E KV C+ + + SGG I +G V
Sbjct: 255 IGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMKNLCYHLEEKSGGKVIHRVG-GVV 313
Query: 123 IFYRGKNY 130
YRG++Y
Sbjct: 314 FLYRGRHY 321
>gi|162464008|ref|NP_001105669.1| CRS2-associated factor 2, chloroplastic precursor [Zea mays]
gi|75147311|sp|Q84N48.1|CAF2P_MAIZE RecName: Full=CRS2-associated factor 2, chloroplastic; AltName:
Full=Chloroplastic group IIA intron splicing facilitator
CRS2-associated factor 2; Flags: Precursor
gi|30349369|gb|AAP22136.1| CRS2-associated factor 2 [Zea mays]
gi|414877310|tpg|DAA54441.1| TPA: crs2 associated factor2 [Zea mays]
Length = 611
Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 63 IGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTV 122
IGR G+ ++ +H HW++ E KV C+ + + SGG I +G V
Sbjct: 255 IGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMKNLCYHLEEKSGGKVIHRVG-GVV 313
Query: 123 IFYRGKNY 130
YRG++Y
Sbjct: 314 FLYRGRHY 321
>gi|258645346|ref|ZP_05732815.1| RNA-binding protein YhbY [Dialister invisus DSM 15470]
gi|260402695|gb|EEW96242.1| RNA-binding protein YhbY [Dialister invisus DSM 15470]
Length = 96
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
LTG+++ Y K A S V IG+ G+ VI ++ E +KV + I +
Sbjct: 2 LTGKQKQYLKSTAVDFSAVVQIGKEGITDNVINSVTEALAARELIKVKINQNSAENIRKA 61
Query: 102 AEEIARLSGGIPIQIIGDDTVIF 124
A+ ++ SG +QIIG + ++F
Sbjct: 62 AKLLSEESGCEIVQIIGRNCILF 84
>gi|406956215|gb|EKD84395.1| hypothetical protein ACD_39C00075G0001 [uncultured bacterium]
Length = 101
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 51/98 (52%), Gaps = 1/98 (1%)
Query: 41 ELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHE 100
+L+ +R + + +A V IG++G+ +IL++ + +E +K+ S P E
Sbjct: 2 KLSSNQRKHLEGLAHHLEPIVRIGKQGLASKIILSVVEAFNTNELIKIKLLDSAPVDAEE 61
Query: 101 FAEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEIMSP 138
A EI + SG + ++IIG ++ YR + P+I P
Sbjct: 62 AAIEICKKSGALLVRIIG-RVIVLYRPFSEKPPKIELP 98
>gi|308069992|ref|YP_003871597.1| hypothetical protein PPE_03241 [Paenibacillus polymyxa E681]
gi|305859271|gb|ADM71059.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
Length = 98
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 49/94 (52%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
LTG+++ Y + MA +G+ G ++ +++ +K E +KV + HE
Sbjct: 2 LTGKQKRYLRSMAHHLDPVFQVGKNGTNEHLMRHINDAIEKRELMKVQILNNCLDDKHEI 61
Query: 102 AEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEI 135
AEE+A +G +QIIG +++ +++ + E+
Sbjct: 62 AEELAAETGSELVQIIGSTIILYKESRDHKEIEL 95
>gi|169838023|ref|ZP_02871211.1| hypothetical protein cdivTM_13159 [candidate division TM7
single-cell isolate TM7a]
Length = 120
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 58/116 (50%), Gaps = 2/116 (1%)
Query: 41 ELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIH- 99
+L+ +ER + +K+A V IG+ G+ V+ ++ KK E +KV + + +
Sbjct: 3 QLSSKERAFLRKLAHNLDPIVRIGKDGIDENVLNSIAEVVKKRELIKVKILQNSSVEFNR 62
Query: 100 EFAEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQ 155
E +EIA + I + IG + +IF++ K+ +I D K KA + K E+
Sbjct: 63 EMGDEIANSTKSIFVDKIG-NILIFFKPKHKKDAKITPEFDKFRKSKAKNRKKIER 117
>gi|242052829|ref|XP_002455560.1| hypothetical protein SORBIDRAFT_03g013160 [Sorghum bicolor]
gi|241927535|gb|EES00680.1| hypothetical protein SORBIDRAFT_03g013160 [Sorghum bicolor]
Length = 614
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 63 IGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTV 122
IGR G+ ++ +H HW++ E KV C+ + + SGG I +G V
Sbjct: 257 IGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMKNLCYHLEEKSGGKVIHRVG-GVV 315
Query: 123 IFYRGKNY 130
YRG++Y
Sbjct: 316 FVYRGRHY 323
>gi|406952956|gb|EKD82389.1| hypothetical protein ACD_39C01328G0004 [uncultured bacterium]
Length = 101
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
L+ +R + + +A V IG++G+ +IL++ + HE +K+ S P E
Sbjct: 3 LSSHQRKHLEALAHHLEPIVRIGKQGLESKIILSVIEAFNTHELIKIKLLDSSPVDADEA 62
Query: 102 AEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEIMSP 138
A+EI + + + +++IG ++ YR + P+I P
Sbjct: 63 AKEICQEAEAVLVRVIG-RVIVLYRPFSDKPPKIELP 98
>gi|374324960|ref|YP_005078089.1| dihydrodipicolinate reductase [Paenibacillus terrae HPL-003]
gi|357203969|gb|AET61866.1| dihydrodipicolinate reductase [Paenibacillus terrae HPL-003]
Length = 98
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 48/94 (51%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
LTG+++ Y + MA +G+ G ++ +++ +K E +KV + HE
Sbjct: 2 LTGKQKRYLRSMAHHLDPVFQVGKNGTNEHLMRHINDAIEKRELMKVQILNNCLDDKHEI 61
Query: 102 AEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEI 135
AEE+A +G +Q+IG +++ ++ Q E+
Sbjct: 62 AEELATETGSELVQLIGSTIILYKESRDNKQIEL 95
>gi|357520913|ref|XP_003630745.1| CRS2-associated factor [Medicago truncatula]
gi|355524767|gb|AET05221.1| CRS2-associated factor [Medicago truncatula]
Length = 698
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
LT EE + K S + +GR G ++ N+H HWK+ K+ C +
Sbjct: 172 LTKEEINELVRSTLKSSRQLNLGRDGFIHNMLDNIHAHWKRRRVCKIKCIGVCTVDMDNV 231
Query: 102 AEEIARLSGGIPIQIIGDDTVIFYRGKNY 130
+++ +GG I G + +RG+NY
Sbjct: 232 CQQLEEKTGGKVIYRRG-GVIYLFRGRNY 259
>gi|308050592|ref|YP_003914158.1| hypothetical protein Fbal_2882 [Ferrimonas balearica DSM 9799]
gi|307632782|gb|ADN77084.1| protein of unknown function UPF0044 [Ferrimonas balearica DSM 9799]
Length = 100
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Query: 41 ELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHE 100
+LT +++ Y K +A V +G G+ GV+ + HE +KV
Sbjct: 3 QLTNKQKQYLKGLAHSLRPVVLLGANGLTEGVLAEIEQALDHHELIKVKAATEDREMKRA 62
Query: 101 FAEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEIMSP 138
+ IAR +G +Q+IG V++ K QP+I P
Sbjct: 63 IMDAIARETGATEVQVIGHIQVLYRPSK---QPKIELP 97
>gi|375089691|ref|ZP_09736016.1| YhbY family putative RNA-binding protein [Facklamia languida CCUG
37842]
gi|374566538|gb|EHR37777.1| YhbY family putative RNA-binding protein [Facklamia languida CCUG
37842]
Length = 105
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 41 ELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHE 100
EL ++ Y +K AQK IG+ G+ I + K E VK + +I E
Sbjct: 3 ELNKQQMKYLRKYAQKEKAIFQIGKLGLTEVFIQQVEAALNKRELVKFNVLQNSDEEIKE 62
Query: 101 FAEEIARLSGGIPIQIIGDDTVIFYR 126
A++++ + + +Q IG +T I YR
Sbjct: 63 VAQQLSEVLQAVVVQTIG-NTAILYR 87
>gi|338812029|ref|ZP_08624228.1| hypothetical protein ALO_08043 [Acetonema longum DSM 6540]
gi|337275998|gb|EGO64436.1| hypothetical protein ALO_08043 [Acetonema longum DSM 6540]
Length = 98
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 41/83 (49%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
LT +++ Y K + + V IG+ GV V+ E +KV + P ++ E
Sbjct: 2 LTTKQKRYLKSLGMTQDPIVQIGKAGVTATVVAGTEAALLARELIKVRVLNNSPQEVKEA 61
Query: 102 AEEIARLSGGIPIQIIGDDTVIF 124
+E+A +G +Q+IG + +++
Sbjct: 62 IQELAIETGAQLVQVIGHNGLLY 84
>gi|158320778|ref|YP_001513285.1| hypothetical protein Clos_1749 [Alkaliphilus oremlandii OhILAs]
gi|158140977|gb|ABW19289.1| protein of unknown function UPF0044 [Alkaliphilus oremlandii
OhILAs]
Length = 98
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
LTG++R Y K +A IG+ G+ + + + E VKV + + E
Sbjct: 2 LTGKQRSYLKSIANGLKPITQIGKSGITDAFLEQLDLALNSREIVKVTILETSLLETKET 61
Query: 102 AEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEIMSP 138
A E+A+ +Q IG+ VI YR KN+ P+I P
Sbjct: 62 ANEVAQKVRAEFVQAIGNKFVI-YR-KNHENPKIELP 96
>gi|390453030|ref|ZP_10238558.1| dihydrodipicolinate reductase [Paenibacillus peoriae KCTC 3763]
Length = 98
Score = 41.2 bits (95), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 48/94 (51%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
LTG+++ Y + MA +G+ G ++ +++ +K E +KV + HE
Sbjct: 2 LTGKQKRYLRSMAHHLDPVFQVGKNGTNEHLMRHINDAIEKRELMKVQILNNCLDDKHEI 61
Query: 102 AEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEI 135
AEE+A + +QIIG +++ +++ Q E+
Sbjct: 62 AEELAAETDSELVQIIGSTIILYKESRDHKQIEL 95
>gi|225445140|ref|XP_002280611.1| PREDICTED: CRS2-associated factor 1, chloroplastic [Vitis vinifera]
Length = 752
Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
LT EE + K + +GR G+ ++ N+H HWK+ K+ CK +
Sbjct: 244 LTEEEIKELVQGCVKSKRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIKCKGVCTVDMDNV 303
Query: 102 AEEIARLSGGIPIQIIGDDTVIF-YRGKNY 130
+++ +GG I G V+F +RG+NY
Sbjct: 304 RQQLEEKTGG--KVIYGKGGVLFLFRGRNY 331
>gi|297739073|emb|CBI28562.3| unnamed protein product [Vitis vinifera]
Length = 422
Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 61 VPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDD 120
V +GR G+ ++ +H HWK+ KV+CK + + +GG I +G
Sbjct: 82 VNLGRDGLTHNMLELIHSHWKRQRVCKVWCKGVPTIDMDNVCHHLEEKTGGKIIHRVG-G 140
Query: 121 TVIFYRGKNY 130
V +RG+NY
Sbjct: 141 VVYLFRGRNY 150
>gi|444918138|ref|ZP_21238217.1| RNA binding protein [Cystobacter fuscus DSM 2262]
gi|444710252|gb|ELW51239.1| RNA binding protein [Cystobacter fuscus DSM 2262]
Length = 96
Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
LTG++R + + V +G+ GV GVI + HE +KV P + HE
Sbjct: 3 LTGKQRRQLRALGHHLEPVVIVGQAGVSEGVIAAVAQALHDHELIKVKINEG-PEERHEA 61
Query: 102 AEEIARLSGGIPIQIIGDDTVIFYR 126
AE++A+ +G Q++G ++F +
Sbjct: 62 AEKLAQGTGAELAQLLGRTVLLFKK 86
>gi|297738777|emb|CBI28022.3| unnamed protein product [Vitis vinifera]
Length = 723
Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
LT EE + K + +GR G+ ++ N+H HWK+ K+ CK +
Sbjct: 244 LTEEEIKELVQGCVKSKRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIKCKGVCTVDMDNV 303
Query: 102 AEEIARLSGGIPIQIIGDDTVIF-YRGKNY 130
+++ +GG I G V+F +RG+NY
Sbjct: 304 RQQLEEKTGG--KVIYGKGGVLFLFRGRNY 331
>gi|242078343|ref|XP_002443940.1| hypothetical protein SORBIDRAFT_07g004760 [Sorghum bicolor]
gi|241940290|gb|EES13435.1| hypothetical protein SORBIDRAFT_07g004760 [Sorghum bicolor]
Length = 437
Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 42 LTGEERFYFKKMAQKRSN--YVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIH 99
LT ER + QK + +GR G+ ++ ++H +WK E V++ C +
Sbjct: 164 LTPAERAFLVDKCQKNRTKRQINLGRDGLTHNMLNDIHNNWKTCEAVRIKCLGVPTVDMQ 223
Query: 100 EFAEEIARLSGGIPIQIIGDDTVIFYRGKNY 130
++ +GG+ I G +I YRG++Y
Sbjct: 224 NVCHQLEDKTGGVIIHRHG-SLLILYRGRHY 253
>gi|255589857|ref|XP_002535109.1| conserved hypothetical protein [Ricinus communis]
gi|223524018|gb|EEF27274.1| conserved hypothetical protein [Ricinus communis]
Length = 748
Score = 40.8 bits (94), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
LT EE + K + +GR G+ ++ N+H HWK+ K+ C +
Sbjct: 252 LTTEEVKILIEGCLKTRRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIKCMGVCTVDMDNV 311
Query: 102 AEEIARLSGGIPIQIIGDDTVIFYRGKNY 130
+++ +GG I G V +RG+NY
Sbjct: 312 CQQLEERTGGKVIYRKG-GVVYLFRGRNY 339
>gi|335049201|ref|ZP_08542203.1| RNA-binding protein, YhbY family [Megasphaera sp. UPII 199-6]
gi|333763699|gb|EGL41135.1| RNA-binding protein, YhbY family [Megasphaera sp. UPII 199-6]
Length = 97
Score = 40.8 bits (94), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 41/88 (46%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
+TG+++ K M + V IG+ G+ VI + E +K P+ G E
Sbjct: 1 MTGKDKKMLKAMGSQLPAVVQIGKEGLSAAVIDSARAVLTARELIKAHVLPNAGGDTEEI 60
Query: 102 AEEIARLSGGIPIQIIGDDTVIFYRGKN 129
E++ + G IQ+IG ++F + K+
Sbjct: 61 LHELSTMLGAELIQVIGRYGILFKKKKD 88
>gi|160915284|ref|ZP_02077497.1| hypothetical protein EUBDOL_01293 [Eubacterium dolichum DSM 3991]
gi|158433083|gb|EDP11372.1| putative RNA-binding protein, YhbY family [Eubacterium dolichum DSM
3991]
Length = 94
Score = 40.8 bits (94), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
LTG+++ + +AQ R IG+ + +I + + HE VK+ + P +E
Sbjct: 2 LTGKQKSELRGIAQTRKALFQIGKDAISENLIKTLQDSLEAHELVKLSLLKTCPITPNEA 61
Query: 102 AEEIARLSGGIPIQIIGDDTVIFYR 126
A E++ + +QIIG TVI YR
Sbjct: 62 AIELSAATHSEVVQIIGH-TVILYR 85
>gi|282882857|ref|ZP_06291462.1| RNA-binding protein YhbY [Peptoniphilus lacrimalis 315-B]
gi|300814148|ref|ZP_07094431.1| RNA-binding protein, YhbY family [Peptoniphilus sp. oral taxon 836
str. F0141]
gi|281297268|gb|EFA89759.1| RNA-binding protein YhbY [Peptoniphilus lacrimalis 315-B]
gi|300511805|gb|EFK39022.1| RNA-binding protein, YhbY family [Peptoniphilus sp. oral taxon 836
str. F0141]
Length = 97
Score = 40.4 bits (93), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
L G++R Y K +A V IG+ G+ + + + HE VK+ + P + E
Sbjct: 2 LRGKDRSYLKSLANNLDPLVQIGKFGLSESLFDQLDKSLEDHELVKIKVLKNSPVEAKEI 61
Query: 102 AEEIARLSGGIPIQIIGDDTVIFYRGK 128
+EI +G +Q IG I+ + K
Sbjct: 62 VQEILEKTGAEFVQQIGSKLTIYRQSK 88
>gi|399003674|ref|ZP_10706330.1| sugar phosphate isomerase/epimerase [Pseudomonas sp. GM18]
gi|398122124|gb|EJM11728.1| sugar phosphate isomerase/epimerase [Pseudomonas sp. GM18]
Length = 307
Score = 40.4 bits (93), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 8/130 (6%)
Query: 45 EERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEE 104
EER Y + + VP RG+ + + W + V+ P G I EFA+E
Sbjct: 122 EERDYAAGHSDRAPRLVPEAWRGMMAHIRAIAELAWTEF-GVRTVIHPHAGGYI-EFADE 179
Query: 105 IARLSGGIPIQIIG---DDTVIFYRGKNYVQP--EIMSPIDTLSKKKALEKSKYEQSLES 159
+ARL IP ++ G D ++Y G + VQ + +D L K ++++ ++Q L
Sbjct: 180 LARLVEDIPYEVAGLCLDTGHLYYAGMDPVQTLRQYADRVDYLHFKD-IDQAVFDQVLGE 238
Query: 160 VRRFIAMAEK 169
F A K
Sbjct: 239 HITFFAACAK 248
>gi|359473240|ref|XP_003631275.1| PREDICTED: LOW QUALITY PROTEIN: CRS2-associated factor 2,
chloroplastic-like [Vitis vinifera]
Length = 560
Score = 40.4 bits (93), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 61 VPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDD 120
V +GR G+ ++ +H HWK+ KV+CK + + +GG I +G
Sbjct: 215 VNLGRDGLTHNMLELIHSHWKRQRVCKVWCKGVPTIDMDNVCHHLEEKTGGKIIHRVG-G 273
Query: 121 TVIFYRGKNY 130
V +RG+NY
Sbjct: 274 VVYLFRGRNY 283
>gi|307135966|gb|ADN33825.1| RNA splicing factor [Cucumis melo subsp. melo]
Length = 603
Score = 40.4 bits (93), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 61 VPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDD 120
V +GR G+ ++ +H HWK+ KV CK + I +GG I +G
Sbjct: 261 VNLGRDGLTHNMLELIHSHWKRQRVCKVRCKGVPTVDMDNICHHIEEKTGGKIIHRVG-G 319
Query: 121 TVIFYRGKNY 130
+ +RG+NY
Sbjct: 320 VLYLFRGRNY 329
>gi|224113759|ref|XP_002332503.1| predicted protein [Populus trichocarpa]
gi|222832483|gb|EEE70960.1| predicted protein [Populus trichocarpa]
Length = 699
Score = 40.4 bits (93), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 63 IGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTV 122
+GR G+ ++ N+H HWK+ K+ CK + +++ +GG I G +
Sbjct: 269 MGRDGLTHNMLDNIHAHWKRRRVCKIKCKGVCTVDMDNVCQQLEERTGGKIIYRKG-GVL 327
Query: 123 IFYRGKNY 130
+RG+NY
Sbjct: 328 YLFRGRNY 335
>gi|22329751|ref|NP_173754.2| CRS2-associated factor 2 [Arabidopsis thaliana]
gi|75173812|sp|Q9LDA9.1|CAF2P_ARATH RecName: Full=CRS2-associated factor 2, chloroplastic; AltName:
Full=Chloroplastic group IIA intron splicing facilitator
CRS2-associated factor 2; Flags: Precursor
gi|8778588|gb|AAF79596.1|AC007945_16 F28C11.4 [Arabidopsis thaliana]
gi|9295699|gb|AAF87005.1|AC005292_14 F26F24.27 [Arabidopsis thaliana]
gi|17065312|gb|AAL32810.1| Unknown protein [Arabidopsis thaliana]
gi|21387129|gb|AAM47968.1| unknown protein [Arabidopsis thaliana]
gi|332192262|gb|AEE30383.1| CRS2-associated factor 2 [Arabidopsis thaliana]
Length = 564
Score = 40.0 bits (92), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 19/107 (17%)
Query: 24 LKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKH 83
LKR+E +G ++KPH M R V +GR G ++ +H HWK+
Sbjct: 203 LKRWE----KGMLIKPH------------MHDNRQ--VNLGRDGFTHNMLELIHSHWKRR 244
Query: 84 ETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTVIFYRGKNY 130
KV CK ++ + +GG I +G V +RG+NY
Sbjct: 245 RVCKVRCKGVPTVDMNNVCRVLEEKTGGEIIHRVG-GVVYLFRGRNY 290
>gi|375084589|ref|ZP_09731451.1| YhbY family putative RNA-binding protein [Megamonas funiformis YIT
11815]
gi|374567978|gb|EHR39174.1| YhbY family putative RNA-binding protein [Megamonas funiformis YIT
11815]
Length = 101
Score = 40.0 bits (92), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
Query: 40 HELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIH 99
+ LTG+++ + + + VPIG+ G+ V+ + +K E +KV + P I
Sbjct: 4 NTLTGKQKRFLRSLGMTLEPIVPIGKEGITPAVVNSADEAIEKRELIKVRVLQNCPEDIE 63
Query: 100 EFAEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEIMSP 138
+A + +Q+IG + +++ R N+ +P+I P
Sbjct: 64 VAITTLAERTNCDLVQVIGRNGLLWRR--NFKKPKIELP 100
>gi|110742047|dbj|BAE98956.1| hypothetical protein [Arabidopsis thaliana]
Length = 717
Score = 40.0 bits (92), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHE- 100
L +E +++A+ + +GR G+ M W+K K+ K E
Sbjct: 423 LGPKEATALRRLARSIPPHFALGRSRQLQGLATAMVRLWEKSMLAKIAIKRGVQSTTSER 482
Query: 101 FAEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEIMSPI 139
AE++ +L+GGI + D ++FYRGKN++ E+ +
Sbjct: 483 MAEDLKKLTGGIMLSR-NKDFLVFYRGKNFLSREVADAL 520
>gi|374295608|ref|YP_005045799.1| putative RNA-binding protein, YhbY family [Clostridium clariflavum
DSM 19732]
gi|359825102|gb|AEV67875.1| putative RNA-binding protein, YhbY family [Clostridium clariflavum
DSM 19732]
Length = 96
Score = 40.0 bits (92), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 40/87 (45%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
LTG++R Y + +A +G+ G+ ++ + + E +KV + I
Sbjct: 2 LTGKQRSYLRSLANNIEPIFQVGKGGINENMVKQFNEALEARELIKVSVLKNSADDIRTI 61
Query: 102 AEEIARLSGGIPIQIIGDDTVIFYRGK 128
E A L+G +Q+IG+ V++ K
Sbjct: 62 CNEAAELTGSEIVQVIGNKFVLYKESK 88
>gi|449478585|ref|XP_004155360.1| PREDICTED: LOW QUALITY PROTEIN: CRS2-associated factor 2,
chloroplastic-like [Cucumis sativus]
Length = 603
Score = 40.0 bits (92), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 61 VPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDD 120
V +GR G+ ++ +H HWK+ KV CK + I +GG I +G
Sbjct: 261 VNLGRDGLTHNMLELIHSHWKRQRVCKVRCKGVPTVDMDNICHHIEEKTGGKIIHRVG-G 319
Query: 121 TVIFYRGKNY 130
+ +RG+NY
Sbjct: 320 VLYLFRGRNY 329
>gi|449434945|ref|XP_004135256.1| PREDICTED: LOW QUALITY PROTEIN: CRS2-associated factor 2,
chloroplastic-like [Cucumis sativus]
Length = 602
Score = 40.0 bits (92), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 61 VPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDD 120
V +GR G+ ++ +H HWK+ KV CK + I +GG I +G
Sbjct: 260 VNLGRDGLTHNMLELIHSHWKRQRVCKVRCKGVPTVDMDNICHHIEEKTGGKIIHRVG-G 318
Query: 121 TVIFYRGKNY 130
+ +RG+NY
Sbjct: 319 VLYLFRGRNY 328
>gi|365904268|ref|ZP_09442027.1| YhbY domain RNA binding protein [Lactobacillus versmoldensis KCTC
3814]
Length = 104
Score = 40.0 bits (92), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
+ G++ Y + AQ V +GR G+ ++ + K+E +KV + + +
Sbjct: 3 IKGKKNRYLRSQAQTMKPVVRVGREGISDNLLTQIQQLLYKNELIKVSFLQNTMAEPQQL 62
Query: 102 AEEIARLSGGIP-IQIIGDDTVIFYR 126
A+ + L GGI IQ IG IFY+
Sbjct: 63 ADALTELDGGIALIQTIGSKA-IFYK 87
>gi|226508160|ref|NP_001140244.1| uncharacterized protein LOC100272285 [Zea mays]
gi|194698680|gb|ACF83424.1| unknown [Zea mays]
gi|413917198|gb|AFW57130.1| hypothetical protein ZEAMMB73_054545 [Zea mays]
Length = 424
Score = 39.7 bits (91), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Query: 42 LTGEERFYFKKMAQKRSN--YVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIH 99
LT ER + QK + +GR G ++ ++H +WK E V++ C +
Sbjct: 165 LTPAERAFLVDRCQKNRTKRQINLGRDGFTHNMLSDVHNNWKTCEAVRIKCLGVPTVDMQ 224
Query: 100 EFAEEIARLSGGIPIQIIGDDTVIFYRGKNY 130
++ +GG+ I G +I YRG++Y
Sbjct: 225 NVCHQLEDKTGGLIIHRHG-SLLILYRGRHY 254
>gi|147799432|emb|CAN76866.1| hypothetical protein VITISV_012308 [Vitis vinifera]
Length = 393
Score = 39.7 bits (91), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
LT EE + K + +GR G+ ++ N+H HWK+ K+ CK +
Sbjct: 244 LTEEEIKELVQGCVKSKRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIKCKGVCTVDMDNV 303
Query: 102 AEEIARLSGGIPIQIIGDDTVIF-YRGKNY 130
+++ +GG I G V+F +RG+NY
Sbjct: 304 RQQLEEKTGG--KVIYGKGGVLFLFRGRNY 331
>gi|427414360|ref|ZP_18904550.1| hypothetical protein HMPREF9282_01957 [Veillonella ratti
ACS-216-V-Col6b]
gi|425714736|gb|EKU77739.1| hypothetical protein HMPREF9282_01957 [Veillonella ratti
ACS-216-V-Col6b]
Length = 95
Score = 39.7 bits (91), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 3/97 (3%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
+TG+++ + + +A V IG+ G+ VI + E +KV + P E
Sbjct: 1 MTGKQKRFLRALASTMPAVVMIGKGGLEDAVIDSARAAITARELIKVKVLNNAPVDPEET 60
Query: 102 AEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEIMSP 138
EE+A + G +Q+IG + V++ K+ P+I+ P
Sbjct: 61 FEELADMLGAELVQVIGHNGVLYKAKKD---PKIILP 94
>gi|146313248|ref|YP_001178322.1| RNA-binding protein YhbY [Enterobacter sp. 638]
gi|145320124|gb|ABP62271.1| protein of unknown function UPF0044 [Enterobacter sp. 638]
Length = 110
Score = 39.7 bits (91), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 50/111 (45%), Gaps = 12/111 (10%)
Query: 16 LNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILN 75
+N+F S R ++Y + L+ +++ + K +A V +G G+ GV+
Sbjct: 1 MNRFQSQRKQKYTM-----------NLSTKQKQHLKGLAHPLKPVVMLGNNGLTEGVLAE 49
Query: 76 MHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTVIFYR 126
+ + + HE +KV E I R +G +Q+IG T++ YR
Sbjct: 50 IELALEHHELIKVKIASEDRDSKTLIVEAIVRETGACNVQVIG-KTLVLYR 99
>gi|125972688|ref|YP_001036598.1| hypothetical protein Cthe_0164 [Clostridium thermocellum ATCC
27405]
gi|256004846|ref|ZP_05429820.1| protein of unknown function UPF0044 [Clostridium thermocellum DSM
2360]
gi|281416875|ref|ZP_06247895.1| protein of unknown function UPF0044 [Clostridium thermocellum JW20]
gi|385779396|ref|YP_005688561.1| hypothetical protein Clo1313_2069 [Clostridium thermocellum DSM
1313]
gi|419722582|ref|ZP_14249722.1| RNA-binding, CRM domain-containing protein [Clostridium
thermocellum AD2]
gi|419725539|ref|ZP_14252580.1| RNA-binding, CRM domain-containing protein [Clostridium
thermocellum YS]
gi|125712913|gb|ABN51405.1| protein of unknown function UPF0044 [Clostridium thermocellum ATCC
27405]
gi|255991156|gb|EEU01264.1| protein of unknown function UPF0044 [Clostridium thermocellum DSM
2360]
gi|281408277|gb|EFB38535.1| protein of unknown function UPF0044 [Clostridium thermocellum JW20]
gi|316941076|gb|ADU75110.1| protein of unknown function UPF0044 [Clostridium thermocellum DSM
1313]
gi|380771109|gb|EIC04988.1| RNA-binding, CRM domain-containing protein [Clostridium
thermocellum YS]
gi|380781349|gb|EIC11007.1| RNA-binding, CRM domain-containing protein [Clostridium
thermocellum AD2]
Length = 96
Score = 39.7 bits (91), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 40/87 (45%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
LTG++R Y + +A IG+ G+ +I + + E +KV + E
Sbjct: 2 LTGKQRSYLRSLANSIEPIFQIGKGGINDNMIKQFNEALEARELIKVAVLKNAMVDTKEV 61
Query: 102 AEEIARLSGGIPIQIIGDDTVIFYRGK 128
E+A L G +Q+IG+ V++ K
Sbjct: 62 CHEVASLVGAEVVQVIGNKFVLYKESK 88
>gi|302391360|ref|YP_003827180.1| hypothetical protein [Acetohalobium arabaticum DSM 5501]
gi|302203437|gb|ADL12115.1| protein of unknown function UPF0044 [Acetohalobium arabaticum DSM
5501]
Length = 97
Score = 39.7 bits (91), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 42/83 (50%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
LTG++R Y +K + + V IG++G+ ++ + + E +K+ + E
Sbjct: 2 LTGKQRSYLRKQGNQLNPVVQIGKKGITPDLLKQVEEVLEAKELIKIRALNNSLYTAREM 61
Query: 102 AEEIARLSGGIPIQIIGDDTVIF 124
AEE+A +Q+IG+ +I+
Sbjct: 62 AEELAEECNAEIVQVIGNVCLIY 84
>gi|294634506|ref|ZP_06713041.1| RNA-binding protein YhbY [Edwardsiella tarda ATCC 23685]
gi|451966460|ref|ZP_21919713.1| putative RNA-binding protein [Edwardsiella tarda NBRC 105688]
gi|291092020|gb|EFE24581.1| RNA-binding protein YhbY [Edwardsiella tarda ATCC 23685]
gi|451314761|dbj|GAC65075.1| putative RNA-binding protein [Edwardsiella tarda NBRC 105688]
Length = 97
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 39/83 (46%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
LT +++ + K +A V +G G+ GV+ + HE +KV +
Sbjct: 3 LTNKQKQHLKSLAHSLKPVVQLGANGLTEGVLAEIEQALAHHELIKVKIAAEERETKTLI 62
Query: 102 AEEIARLSGGIPIQIIGDDTVIF 124
A+ I R +G +Q+IG+ VI+
Sbjct: 63 ADAIVRETGACNVQLIGNVLVIY 85
>gi|150390075|ref|YP_001320124.1| hypothetical protein Amet_2308 [Alkaliphilus metalliredigens QYMF]
gi|149949937|gb|ABR48465.1| protein of unknown function UPF0044 [Alkaliphilus metalliredigens
QYMF]
Length = 113
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 2/97 (2%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
LTG++R Y +K+A IG+ G+ ++ + + E +KV + E
Sbjct: 17 LTGKQRSYLRKLANGIRPVTQIGKAGITDSLLEQLELTLASRELIKVSILETSLLDTKET 76
Query: 102 AEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEIMSP 138
A E++ +Q IG+ VI+ K Y P+I P
Sbjct: 77 ANEVSTKLRAEFVQAIGNKFVIYR--KAYENPQIELP 111
>gi|261342623|ref|ZP_05970481.1| RNA-binding protein YhbY [Enterobacter cancerogenus ATCC 35316]
gi|334125789|ref|ZP_08499775.1| RNA-binding protein YhbY [Enterobacter hormaechei ATCC 49162]
gi|345301002|ref|YP_004830360.1| RNA-binding, CRM domain-containing protein [Enterobacter asburiae
LF7a]
gi|365972269|ref|YP_004953830.1| RNA-binding protein YhbY [Enterobacter cloacae EcWSU1]
gi|401676916|ref|ZP_10808897.1| RNA-binding protein YhbY [Enterobacter sp. SST3]
gi|288315271|gb|EFC54209.1| RNA-binding protein YhbY [Enterobacter cancerogenus ATCC 35316]
gi|295097666|emb|CBK86756.1| conserved hypothetical protein TIGR00253 [Enterobacter cloacae
subsp. cloacae NCTC 9394]
gi|333386551|gb|EGK57764.1| RNA-binding protein YhbY [Enterobacter hormaechei ATCC 49162]
gi|345094939|gb|AEN66575.1| RNA-binding, CRM domain-containing protein [Enterobacter asburiae
LF7a]
gi|365751182|gb|AEW75409.1| RNA-binding protein YhbY [Enterobacter cloacae EcWSU1]
gi|400215825|gb|EJO46730.1| RNA-binding protein YhbY [Enterobacter sp. SST3]
Length = 110
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 50/111 (45%), Gaps = 12/111 (10%)
Query: 16 LNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILN 75
+N+F S R ++Y + L+ +++ + K +A V +G G+ GV+
Sbjct: 1 MNRFQSQRKQKYTM-----------NLSTKQKQHLKGLAHPLKPVVMLGNNGLTEGVLAE 49
Query: 76 MHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTVIFYR 126
+ + HE +KV + E I R +G +Q+IG T++ YR
Sbjct: 50 IEQALEHHELIKVKIASEDRDTKNLIVEAIVRETGACNVQVIG-KTLVLYR 99
>gi|290968186|ref|ZP_06559730.1| RNA-binding protein, YhbY family [Megasphaera genomosp. type_1 str.
28L]
gi|290781764|gb|EFD94348.1| RNA-binding protein, YhbY family [Megasphaera genomosp. type_1 str.
28L]
Length = 97
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 41/88 (46%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
+TG+++ K M + V IG+ G+ VI + E +K P+ G E
Sbjct: 1 MTGKDKKMLKAMGSQLPAVVQIGKEGLSAPVIDSARAVLTARELIKAHVLPNAGGDTEEI 60
Query: 102 AEEIARLSGGIPIQIIGDDTVIFYRGKN 129
E++ + G IQ+IG ++F + K+
Sbjct: 61 LHELSTMLGAELIQVIGRYGILFKKKKD 88
>gi|253574705|ref|ZP_04852045.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
str. D14]
gi|251845751|gb|EES73759.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
str. D14]
Length = 96
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 46/94 (48%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
LTG+++ Y + +A +G+ G +I + ++ E +K+ + E
Sbjct: 2 LTGKQKRYLRSLAHGLQPIFQVGKGGTNEHMIKQISEALERRELIKISVLNNNLDDPQEI 61
Query: 102 AEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEI 135
AEE+A+ +G +Q+IG +++ + Y Q E+
Sbjct: 62 AEELAQGAGAELVQLIGRTIILYKESREYKQIEL 95
>gi|296104891|ref|YP_003615037.1| putative RNA-binding protein [Enterobacter cloacae subsp. cloacae
ATCC 13047]
gi|295059350|gb|ADF64088.1| putative RNA-binding protein [Enterobacter cloacae subsp. cloacae
ATCC 13047]
Length = 110
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 50/111 (45%), Gaps = 12/111 (10%)
Query: 16 LNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILN 75
+N+F S R ++Y + L+ +++ + K +A V +G G+ GV+
Sbjct: 1 MNRFQSQRKQKYTM-----------NLSTKQKQHLKGLAHPLKPVVMLGNNGLTEGVLAE 49
Query: 76 MHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTVIFYR 126
+ + HE +KV + E I R +G +Q+IG T++ YR
Sbjct: 50 IEQALEHHELIKVKIASEDRDTKNLIVEAIVRETGACNVQVIG-KTLVLYR 99
>gi|268592833|ref|ZP_06127054.1| RNA-binding protein YhbY [Providencia rettgeri DSM 1131]
gi|422007184|ref|ZP_16354170.1| RNA-binding protein [Providencia rettgeri Dmel1]
gi|291311619|gb|EFE52072.1| RNA-binding protein YhbY [Providencia rettgeri DSM 1131]
gi|414097074|gb|EKT58729.1| RNA-binding protein [Providencia rettgeri Dmel1]
Length = 97
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 36/76 (47%)
Query: 49 YFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARL 108
+ K +A + V IG G+ GV+ + + HE +KV + A+ I R
Sbjct: 10 HLKSLAHHLNPVVMIGNNGLTEGVLAEIELSLAHHELIKVKIAGEDRDTKNLIADAIVRE 69
Query: 109 SGGIPIQIIGDDTVIF 124
+G + +QIIG VI+
Sbjct: 70 TGAVNVQIIGKILVIY 85
>gi|257125131|ref|YP_003163245.1| hypothetical protein Lebu_0336 [Leptotrichia buccalis C-1013-b]
gi|257049070|gb|ACV38254.1| protein of unknown function UPF0044 [Leptotrichia buccalis
C-1013-b]
Length = 112
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
Query: 41 ELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQI-H 99
+L+ +ER + +K+A V IG+ G+ V+ ++ KK E +KV + +I
Sbjct: 3 QLSSKERAFLRKLAHNLEPIVRIGKDGIDENVLKSIAEVVKKRELIKVKILQNSSVEIDR 62
Query: 100 EFAEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEI 135
E A+EIAR + + + IG +IF++ K +I
Sbjct: 63 EMADEIARDTKSVFVDRIG-KILIFFKPKTTKDAKI 97
>gi|383790376|ref|YP_005474950.1| putative RNA-binding protein [Spirochaeta africana DSM 8902]
gi|383106910|gb|AFG37243.1| putative RNA-binding protein, YhbY family [Spirochaeta africana DSM
8902]
Length = 118
Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 41 ELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHE 100
+L +R Y + A V +G+RG ++ + HE +K+ K ++
Sbjct: 13 QLNSSQRRYLSRQAHDLDPIVMVGKRGFTDQIVEAVQQALHAHELIKIRFVDYKADRV-T 71
Query: 101 FAEEIARLSGGIPIQIIGDDTVIF 124
EE+AR + + +++IG+ ++F
Sbjct: 72 ITEELARRADAVVVRVIGNVAILF 95
>gi|302763677|ref|XP_002965260.1| hypothetical protein SELMODRAFT_62891 [Selaginella moellendorffii]
gi|302809791|ref|XP_002986588.1| hypothetical protein SELMODRAFT_42935 [Selaginella moellendorffii]
gi|300145771|gb|EFJ12445.1| hypothetical protein SELMODRAFT_42935 [Selaginella moellendorffii]
gi|300167493|gb|EFJ34098.1| hypothetical protein SELMODRAFT_62891 [Selaginella moellendorffii]
Length = 366
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 4/97 (4%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
LT +E K V IG+ G+ ++ +H HWK+ +K+ CK +
Sbjct: 94 LTPDEIGDLVLACNKEHRQVNIGKDGLTHNMLDLIHCHWKRRRVIKLRCKGVPTIDMDNV 153
Query: 102 AEEIARLSGGIPIQIIGDDTVIFYRGKNY---VQPEI 135
I +GG IQ G ++ +RG+NY +PEI
Sbjct: 154 CFHIEDKTGGKIIQRHG-GSIYLFRGRNYNPRYRPEI 189
>gi|289207886|ref|YP_003459952.1| hypothetical protein TK90_0701 [Thioalkalivibrio sp. K90mix]
gi|288943517|gb|ADC71216.1| protein of unknown function UPF0044 [Thioalkalivibrio sp. K90mix]
Length = 99
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 37/85 (43%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
LT +R + + +A R V IGR G+ V+ + HE VK+ +
Sbjct: 3 LTDAQRRHLRSLAHPRKPIVTIGRNGLTDAVVKELEQALAHHELVKIKVNIGDREARNGT 62
Query: 102 AEEIARLSGGIPIQIIGDDTVIFYR 126
E++ +GG +Q IG +F R
Sbjct: 63 VEDLCERTGGALVQRIGYVATLFRR 87
>gi|15240416|ref|NP_200300.1| CRS2-associated factor 2 [Arabidopsis thaliana]
gi|75170294|sp|Q9FFU1.1|CAF2M_ARATH RecName: Full=CRS2-associated factor 2, mitochondrial; Flags:
Precursor
gi|9758269|dbj|BAB08768.1| unnamed protein product [Arabidopsis thaliana]
gi|332009170|gb|AED96553.1| CRS2-associated factor 2 [Arabidopsis thaliana]
Length = 358
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 61 VPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDD 120
+ +G+ GV +I ++H HWKK E V++ C + + SGG I +
Sbjct: 164 INLGKGGVTHNMIDDIHNHWKKAEAVRIKCLGVPTLDMDNICFHLEEKSGG-KIVYRNIN 222
Query: 121 TVIFYRGKNY 130
++ YRG+NY
Sbjct: 223 ILVLYRGRNY 232
>gi|304440694|ref|ZP_07400578.1| RNA-binding protein YhbY [Peptoniphilus duerdenii ATCC BAA-1640]
gi|304370881|gb|EFM24503.1| RNA-binding protein YhbY [Peptoniphilus duerdenii ATCC BAA-1640]
Length = 95
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/87 (20%), Positives = 40/87 (45%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
+ ++R Y K +A + +G+ G+ G++ + + HE +K+ + P + E
Sbjct: 2 INSKQRAYLKSLAHDLKPLIQVGKSGITEGLLSQIDASLESHELIKITFLQNSPVEGKEV 61
Query: 102 AEEIARLSGGIPIQIIGDDTVIFYRGK 128
+EI +G + +IG ++ K
Sbjct: 62 VDEIIEATGADFVNLIGKKLTLYRESK 88
>gi|339010604|ref|ZP_08643174.1| putative RNA-binding protein YqeI [Brevibacillus laterosporus LMG
15441]
gi|421873987|ref|ZP_16305596.1| putative uncharacterized protein [Brevibacillus laterosporus GI-9]
gi|338772759|gb|EGP32292.1| putative RNA-binding protein YqeI [Brevibacillus laterosporus LMG
15441]
gi|372457098|emb|CCF15145.1| putative uncharacterized protein [Brevibacillus laterosporus GI-9]
Length = 96
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
LTG+++ Y + MA + +G+ GV ++ + + E +KV + H
Sbjct: 2 LTGKQKRYLRSMAHHLTPIFQVGKGGVNENMVKQIQEALEVRELIKVSILQNNMDDKHAV 61
Query: 102 AEEIARLSGGIPIQIIGDDTVIFYR 126
AE++A +G +Q+IG TV+ Y+
Sbjct: 62 AEDLATGAGAEMVQLIG-HTVVLYK 85
>gi|297792957|ref|XP_002864363.1| hypothetical protein ARALYDRAFT_331830 [Arabidopsis lyrata subsp.
lyrata]
gi|297310198|gb|EFH40622.1| hypothetical protein ARALYDRAFT_331830 [Arabidopsis lyrata subsp.
lyrata]
Length = 362
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 58 SNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQII 117
S + +G+ GV +I ++H HWKK E V++ C + + SGG I
Sbjct: 157 SRQINLGKGGVTHNMIDDIHNHWKKAEAVRIKCLGVPTLDMDNICFHLEEKSGG-KIVYR 215
Query: 118 GDDTVIFYRGKNY 130
+ ++ YRG+NY
Sbjct: 216 HINILVLYRGRNY 228
>gi|238918416|ref|YP_002931930.1| conserved hypothetical protein TIGR00253 [Edwardsiella ictaluri
93-146]
gi|238867984|gb|ACR67695.1| conserved hypothetical protein TIGR00253 [Edwardsiella ictaluri
93-146]
Length = 97
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 38/83 (45%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
LT +++ + K +A V +G G+ GV+ + HE +KV +
Sbjct: 3 LTNKQKQHLKSLAHSLKPVVQLGANGLTEGVLAEIEQALAHHELIKVRIAAEERDTKTLI 62
Query: 102 AEEIARLSGGIPIQIIGDDTVIF 124
A I R +G +Q+IG+ VI+
Sbjct: 63 ANAIVRETGAYNVQLIGNILVIY 85
>gi|442804003|ref|YP_007372152.1| RNA-binding protein YqeI [Clostridium stercorarium subsp.
stercorarium DSM 8532]
gi|442739853|gb|AGC67542.1| RNA-binding protein YqeI [Clostridium stercorarium subsp.
stercorarium DSM 8532]
Length = 96
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 38/87 (43%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
LTG++R Y + +A IG+ G+ VI + E VK + E
Sbjct: 2 LTGKQRSYLRSLANDIPAIFQIGKGGISDNVIKQFDEALEARELVKATVLKNSALSSREV 61
Query: 102 AEEIARLSGGIPIQIIGDDTVIFYRGK 128
EE+A G +Q+IG+ V++ K
Sbjct: 62 CEELAAALGAEIVQVIGNRFVLYRESK 88
>gi|373454564|ref|ZP_09546430.1| YhbY family putative RNA-binding protein [Dialister succinatiphilus
YIT 11850]
gi|371935839|gb|EHO63582.1| YhbY family putative RNA-binding protein [Dialister succinatiphilus
YIT 11850]
Length = 96
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
LTG+++ Y K A YV IG+ G+ V+ ++ E VKV + I +
Sbjct: 2 LTGKQKQYLKSEAVSLPAYVQIGKEGMTSSVVQSVEDVLLARELVKVKINQNSDEDIRDT 61
Query: 102 AEEIARLSGGIPIQIIGDDTVIF 124
A +A +QIIG + V+F
Sbjct: 62 ASLLAEKLDCEIVQIIGRNCVLF 84
>gi|386827852|ref|ZP_10114959.1| putative RNA-binding protein, YhbY family [Beggiatoa alba B18LD]
gi|386428736|gb|EIJ42564.1| putative RNA-binding protein, YhbY family [Beggiatoa alba B18LD]
Length = 99
Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 38/83 (45%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
LT + Y + +A V +G +G+ ++ + HE +KV + E
Sbjct: 3 LTSHQTRYLRSIAHALKPVVMVGSKGITDALLAELDSALAAHELIKVSIASDDREERREI 62
Query: 102 AEEIARLSGGIPIQIIGDDTVIF 124
+ +++ SG +Q+IG +V++
Sbjct: 63 TDALSKASGAEIVQLIGRTSVLY 85
>gi|218281648|ref|ZP_03488049.1| hypothetical protein EUBIFOR_00616 [Eubacterium biforme DSM 3989]
gi|218217255|gb|EEC90793.1| hypothetical protein EUBIFOR_00616 [Eubacterium biforme DSM 3989]
Length = 96
Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 40/87 (45%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
LT + + Y +K+ + IG+ G+ ++ + + HE VK + P + E
Sbjct: 2 LTSQNKKYLRKLGMDYKSLFQIGKDGLSDNLMDTLSDSLEAHELVKCNLLKTCPVDVREA 61
Query: 102 AEEIARLSGGIPIQIIGDDTVIFYRGK 128
A E A +G + I+G +++ R K
Sbjct: 62 AIECASATGSEVVHIVGHTFLLYRRSK 88
>gi|225425575|ref|XP_002267079.1| PREDICTED: CRS2-associated factor 2, chloroplastic [Vitis vinifera]
gi|297739063|emb|CBI28552.3| unnamed protein product [Vitis vinifera]
Length = 561
Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 61 VPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDD 120
V +GR G+ ++ +H HWK+ KV CK + + +GG I +G
Sbjct: 215 VNLGRDGLTHNMLELIHSHWKRQRVCKVRCKGVPTIDMDNVCHHLEEKTGGKIIHRVG-G 273
Query: 121 TVIFYRGKNY 130
V +RG+NY
Sbjct: 274 VVYLFRGRNY 283
>gi|269137755|ref|YP_003294455.1| RNA-binding protein YhbY [Edwardsiella tarda EIB202]
gi|387866499|ref|YP_005697968.1| RNA binding protein [Edwardsiella tarda FL6-60]
gi|267983415|gb|ACY83244.1| RNA-binding protein YhbY [Edwardsiella tarda EIB202]
gi|304557812|gb|ADM40476.1| RNA binding protein [Edwardsiella tarda FL6-60]
Length = 97
Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 38/83 (45%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
LT +++ + K +A V +G G+ GV+ + HE +KV +
Sbjct: 3 LTNKQKQHLKSLAHSLKPVVQLGANGLTEGVLAEIEQALAHHELIKVKIAAEERETKTLI 62
Query: 102 AEEIARLSGGIPIQIIGDDTVIF 124
A I R +G +Q+IG+ VI+
Sbjct: 63 ANAIVRETGACNVQLIGNILVIY 85
>gi|449443167|ref|XP_004139352.1| PREDICTED: CRS2-associated factor 1, chloroplastic-like [Cucumis
sativus]
gi|449521361|ref|XP_004167698.1| PREDICTED: CRS2-associated factor 1, chloroplastic-like [Cucumis
sativus]
Length = 745
Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 63 IGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTV 122
IGR G+ ++ N+H WK+ K+ CK + +++ +GG I G +
Sbjct: 273 IGRDGLTHNMLENIHALWKRRRVCKIKCKGVCTVDMDNVKQQLEERTGGKIIYSRG-GAL 331
Query: 123 IFYRGKNY 130
YRG+NY
Sbjct: 332 YLYRGRNY 339
>gi|407795084|ref|ZP_11142095.1| RNA-binding protein [Idiomarina xiamenensis 10-D-4]
gi|407209417|gb|EKE79313.1| RNA-binding protein [Idiomarina xiamenensis 10-D-4]
Length = 98
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 3/98 (3%)
Query: 41 ELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHE 100
+LT +++ + K +A V +G G+ GV+ + + HE +KV + +
Sbjct: 2 QLTNKQKQHLKALAHPLKPVVLLGANGLTEGVVAEIELALSHHELIKVKVPEEERELRQQ 61
Query: 101 FAEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEIMSP 138
I R +G +Q+IG T I YR QP+I P
Sbjct: 62 IYAAIVRETGASEVQVIG-KTQILYRPAE--QPKIQLP 96
>gi|226941816|ref|YP_002796890.1| hypothetical protein LHK_02903 [Laribacter hongkongensis HLHK9]
gi|226716743|gb|ACO75881.1| CRS1_YhbY domain containing protein [Laribacter hongkongensis
HLHK9]
Length = 106
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 16/92 (17%)
Query: 41 ELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHE 100
ELT E+R Y K +A + V IG G+ VI + ++ HE +KV ++H
Sbjct: 4 ELTPEQRQYLKGLAHALNPVVMIGNNGLSDSVIREIAVNLDAHELIKV--------RVHG 55
Query: 101 FAEEI-ARLSGGI-------PIQIIGDDTVIF 124
E+ A L G I P+Q+IG VI+
Sbjct: 56 DDREVRAALYGQICDDLDAAPVQMIGKLLVIY 87
>gi|123440805|ref|YP_001004796.1| hypothetical protein YE0426 [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|238750118|ref|ZP_04611621.1| Transcription elongation factor GreA [Yersinia rohdei ATCC 43380]
gi|238757568|ref|ZP_04618753.1| Transcription elongation factor GreA [Yersinia aldovae ATCC 35236]
gi|238761760|ref|ZP_04622734.1| Transcription elongation factor GreA [Yersinia kristensenii ATCC
33638]
gi|238783523|ref|ZP_04627545.1| Transcription elongation factor GreA [Yersinia bercovieri ATCC
43970]
gi|238787586|ref|ZP_04631384.1| Transcription elongation factor GreA [Yersinia frederiksenii ATCC
33641]
gi|238793014|ref|ZP_04636643.1| Transcription elongation factor GreA [Yersinia intermedia ATCC
29909]
gi|238797560|ref|ZP_04641057.1| Transcription elongation factor GreA [Yersinia mollaretii ATCC
43969]
gi|332160071|ref|YP_004296648.1| hypothetical protein YE105_C0447 [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|386311106|ref|YP_006007162.1| RNA binding protein [Yersinia enterocolitica subsp. palearctica
Y11]
gi|418239867|ref|ZP_12866411.1| hypothetical protein IOK_00325 [Yersinia enterocolitica subsp.
palearctica PhRBD_Ye1]
gi|420260785|ref|ZP_14763455.1| RNA binding protein [Yersinia enterocolitica subsp. enterocolitica
WA-314]
gi|433551935|ref|ZP_20507975.1| FIG004454: RNA binding protein [Yersinia enterocolitica IP 10393]
gi|122087766|emb|CAL10552.1| conserved hypothetical protein [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|238699874|gb|EEP92617.1| Transcription elongation factor GreA [Yersinia kristensenii ATCC
33638]
gi|238704330|gb|EEP96862.1| Transcription elongation factor GreA [Yersinia aldovae ATCC 35236]
gi|238711662|gb|EEQ03877.1| Transcription elongation factor GreA [Yersinia rohdei ATCC 43380]
gi|238715578|gb|EEQ07568.1| Transcription elongation factor GreA [Yersinia bercovieri ATCC
43970]
gi|238718557|gb|EEQ10376.1| Transcription elongation factor GreA [Yersinia mollaretii ATCC
43969]
gi|238724373|gb|EEQ16015.1| Transcription elongation factor GreA [Yersinia frederiksenii ATCC
33641]
gi|238727614|gb|EEQ19139.1| Transcription elongation factor GreA [Yersinia intermedia ATCC
29909]
gi|318607369|emb|CBY28867.1| RNA binding protein [Yersinia enterocolitica subsp. palearctica
Y11]
gi|325664301|gb|ADZ40945.1| hypothetical protein YE105_C0447 [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|330862038|emb|CBX72204.1| RNA-binding protein yhbY [Yersinia enterocolitica W22703]
gi|351780693|gb|EHB22758.1| hypothetical protein IOK_00325 [Yersinia enterocolitica subsp.
palearctica PhRBD_Ye1]
gi|404511806|gb|EKA25671.1| RNA binding protein [Yersinia enterocolitica subsp. enterocolitica
WA-314]
gi|431787233|emb|CCO71015.1| FIG004454: RNA binding protein [Yersinia enterocolitica IP 10393]
Length = 97
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
L +++ + K +A V +G G+ GV+ + + HE +KV +
Sbjct: 3 LNNKQKQHLKSLAHPLKPVVMLGNNGLTEGVLAEIEQTLEHHELIKVKITAEERETKALI 62
Query: 102 AEEIARLSGGIPIQIIGDDTVIFYR 126
A+ I R +G + +QIIG + ++ YR
Sbjct: 63 ADAIVRETGAVNVQIIG-NILVLYR 86
>gi|326492864|dbj|BAJ90288.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 630
Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 64/141 (45%), Gaps = 7/141 (4%)
Query: 35 PVVKPHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSK 94
P V+P L EE Y +K+A+ + +GR G+ + W+K K+ K
Sbjct: 360 PGVRP-TLADEELTYLRKLARPLPTHFALGRNTRLQGLAAAVLKLWEKSLIAKIAVKVGI 418
Query: 95 PGQIHE-FAEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKY 153
+E A + L+GG I + D VI YRGK+++ + + + ++ K
Sbjct: 419 QNTNNEQMAWNLKHLTGGT-IILRNKDFVILYRGKDFLPGGVKQSVIEQEARVYAQQVKE 477
Query: 154 EQS----LESVRRFIAMAEKE 170
E++ ++S++ F + +E
Sbjct: 478 EEARLMVMDSLKMFAGLPSEE 498
>gi|160934416|ref|ZP_02081803.1| hypothetical protein CLOLEP_03289 [Clostridium leptum DSM 753]
gi|156867089|gb|EDO60461.1| putative RNA-binding protein, YhbY family [Clostridium leptum DSM
753]
Length = 98
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 2/97 (2%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
LT ++R Y + + + +G+ G+ ++ E +K C + P E
Sbjct: 2 LTSKQRAYLRGLGNPLDTILMVGKGGMSPEILKQADDAITAREIIKGKCLETSPLSSREA 61
Query: 102 AEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEIMSP 138
AEEIA G +Q+IG +++ R N +P I+ P
Sbjct: 62 AEEIASQIGAEVVQVIGTKFILYRR--NEKKPVIVLP 96
>gi|268608886|ref|ZP_06142613.1| hypothetical protein RflaF_05249 [Ruminococcus flavefaciens FD-1]
Length = 100
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 40/85 (47%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
LT ++R Y + +A IG+ GV + ++ +K E +K+ + E
Sbjct: 2 LTSKQRAYLRGIASTYETIYQIGKGGVTEAMCKDIAEALRKRELIKLRVLENSGWTAREA 61
Query: 102 AEEIARLSGGIPIQIIGDDTVIFYR 126
A+ +A +G +Q+IG V+F R
Sbjct: 62 ADAVAEQTGADVVQVIGSKFVLFKR 86
>gi|320353005|ref|YP_004194344.1| hypothetical protein Despr_0879 [Desulfobulbus propionicus DSM
2032]
gi|320121507|gb|ADW17053.1| protein of unknown function UPF0044 [Desulfobulbus propionicus DSM
2032]
Length = 109
Score = 38.1 bits (87), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 41/84 (48%)
Query: 41 ELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHE 100
+LT ++ + + V +G+ G ++ +M K HE +K+ + P + +
Sbjct: 12 DLTSGQKKSLRSLGHHLEPVVHVGKEGFSPALLKSMDAALKAHELIKIKLGQNCPVERNA 71
Query: 101 FAEEIARLSGGIPIQIIGDDTVIF 124
E+AR+SG +Q+IG ++F
Sbjct: 72 AGPELARMSGAALVQVIGRMILLF 95
>gi|392395171|ref|YP_006431773.1| RNA-binding protein [Desulfitobacterium dehalogenans ATCC 51507]
gi|390526249|gb|AFM01980.1| putative RNA-binding protein, YhbY family [Desulfitobacterium
dehalogenans ATCC 51507]
Length = 97
Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 41/87 (47%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
LTG+++ + + M + + IG+ GV VI + E +K P+ +
Sbjct: 2 LTGKQKGFLRSMGNEMDPILQIGKGGVTEAVITQADETLEARELIKGRVLPNSVEDVQRA 61
Query: 102 AEEIARLSGGIPIQIIGDDTVIFYRGK 128
AEE+A + +Q+IG + +++ K
Sbjct: 62 AEELAERTSAELVQVIGRNFLLYRESK 88
>gi|430750626|ref|YP_007213534.1| RNA-binding protein [Thermobacillus composti KWC4]
gi|430734591|gb|AGA58536.1| putative RNA-binding protein, YhbY family [Thermobacillus composti
KWC4]
Length = 96
Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 48/94 (51%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
LTG+++ + + +A + +G+ G+ +I ++ + E +KV ++ G E
Sbjct: 2 LTGKQKRFLRALAHPLNPIFQVGKGGINEHLIRHVSEALEARELIKVSVLNNQEGDPKEI 61
Query: 102 AEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEI 135
EIA +G +Q+IG V++ K++ + E+
Sbjct: 62 GAEIAERAGAELVQVIGKTIVLYRESKDHKKIEL 95
>gi|74317149|ref|YP_314889.1| hypothetical protein Tbd_1131 [Thiobacillus denitrificans ATCC
25259]
gi|74056644|gb|AAZ97084.1| Protein of unknown function UPF0044 [Thiobacillus denitrificans
ATCC 25259]
Length = 98
Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 3/97 (3%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
LT +R Y + +A R V I +G+ V+ + HE +K+ + +
Sbjct: 4 LTPAQRQYLRGLAHNRQPVVMIRGQGLTPAVLKEIERALAAHELIKIKAASDESEVRRAW 63
Query: 102 AEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEIMSP 138
EI SG P+Q IG VI+ + +PEI P
Sbjct: 64 LTEICAASGAEPVQQIGKVLVIY---RPAAKPEITLP 97
>gi|297850808|ref|XP_002893285.1| hypothetical protein ARALYDRAFT_335585 [Arabidopsis lyrata subsp.
lyrata]
gi|297339127|gb|EFH69544.1| hypothetical protein ARALYDRAFT_335585 [Arabidopsis lyrata subsp.
lyrata]
Length = 565
Score = 38.1 bits (87), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 19/113 (16%)
Query: 18 KFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMH 77
+ L LK++E +G ++KPH M R V +GR G ++ +H
Sbjct: 199 EILGEPLKKWE----KGMLIKPH------------MHDNRQ--VNLGRDGFTHNMLELIH 240
Query: 78 MHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTVIFYRGKNY 130
HWK+ KV CK + + +GG I +G V +RG+NY
Sbjct: 241 SHWKRRRVCKVRCKGVPTVDMDNVCRVLEEKTGGEIIHRVG-GVVYLFRGRNY 292
>gi|366166417|ref|ZP_09466172.1| hypothetical protein AcelC_22357 [Acetivibrio cellulolyticus CD2]
Length = 96
Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 39/87 (44%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
LTG++R Y + +A +G+ G+ ++ + + E +KV + E
Sbjct: 2 LTGKQRSYLRSLANNIDPIFQVGKGGINDNMVKQFNDALEARELIKVSVLKNSVDDTREV 61
Query: 102 AEEIARLSGGIPIQIIGDDTVIFYRGK 128
E A L+ +Q+IG+ V++ K
Sbjct: 62 CNEAANLTDSEVVQVIGNKFVLYKESK 88
>gi|225453847|ref|XP_002272563.1| PREDICTED: CRS2-associated factor 1, mitochondrial [Vitis vinifera]
gi|296089125|emb|CBI38828.3| unnamed protein product [Vitis vinifera]
Length = 418
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
Query: 42 LTGEERFYFKKMAQKRSN--YVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIH 99
LT ER + Q+ + +GR G+ ++ ++H HWK E V++ C +
Sbjct: 164 LTAAERKILVEKCQRHRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCMGVPTVDMK 223
Query: 100 EFAEEIARLSGGIPIQIIGDDTVIFYRGKNY 130
++ + G I G ++ YRG+NY
Sbjct: 224 NVCTQLEDKTSGKVIHRQG-GLLVLYRGRNY 253
>gi|315634154|ref|ZP_07889443.1| RNA-binding protein YhbY [Aggregatibacter segnis ATCC 33393]
gi|315477404|gb|EFU68147.1| RNA-binding protein YhbY [Aggregatibacter segnis ATCC 33393]
Length = 100
Score = 37.7 bits (86), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
L+ +++ Y K +A S V +G G+ GV+ + + HE +KV S
Sbjct: 5 LSTKQKQYLKSLAHHLSPVVMLGGNGLTEGVLAEIDLSLNHHELIKVKINGSDRETKQLI 64
Query: 102 AEEIARLSGGIPIQIIGDDTVIFYR 126
+ I R +G +Q IG ++ YR
Sbjct: 65 IDAIVRETGAAEVQTIG-HVLVLYR 88
>gi|329120972|ref|ZP_08249603.1| RNA-binding protein YhbY [Dialister micraerophilus DSM 19965]
gi|327471134|gb|EGF16588.1| RNA-binding protein YhbY [Dialister micraerophilus DSM 19965]
Length = 104
Score = 37.7 bits (86), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
LTG+++ Y K +A K V IG+ G+ VI ++ K E +KV + I+
Sbjct: 10 LTGKQKQYLKGIASKFPAVVQIGKNGIEESVIESIFNALKARELIKVKINQNSVEDINNT 69
Query: 102 AEEIARLSGGIPIQIIGDDTVIFYRGK 128
A+ ++ +Q+IG + ++F + K
Sbjct: 70 AKFLSEKLSCELVQVIGRNCILFNQKK 96
>gi|317493618|ref|ZP_07952039.1| CRS1/YhbY domain-containing protein [Enterobacteriaceae bacterium
9_2_54FAA]
gi|365836759|ref|ZP_09378146.1| RNA-binding protein, YhbY family [Hafnia alvei ATCC 51873]
gi|316918561|gb|EFV39899.1| CRS1/YhbY domain-containing protein [Enterobacteriaceae bacterium
9_2_54FAA]
gi|364563441|gb|EHM41250.1| RNA-binding protein, YhbY family [Hafnia alvei ATCC 51873]
Length = 97
Score = 37.7 bits (86), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 38/83 (45%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
L +++ + K +A V +G G+ GV+ + HE +KV +
Sbjct: 3 LNNKQKQHLKSLAHPLKPVVQLGNNGLTEGVLAEIEQALAHHELIKVKIAAEERDTKTLI 62
Query: 102 AEEIARLSGGIPIQIIGDDTVIF 124
A+ I R +G +Q+IG+ VI+
Sbjct: 63 ADAIVRETGACQVQLIGNVLVIY 85
>gi|397905219|ref|ZP_10506087.1| FIG004454: RNA binding protein [Caloramator australicus RC3]
gi|397161731|emb|CCJ33421.1| FIG004454: RNA binding protein [Caloramator australicus RC3]
Length = 97
Score = 37.7 bits (86), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
L G++R Y + +A + + IG+ G+ V+ + E +K+ + +E
Sbjct: 2 LKGKQRSYLRGLANNIESIIQIGKNGLDEAVLKQIDEALTARELIKITVLKNSLLDPYET 61
Query: 102 AEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEIMSP 138
+++ P+Q+IG+ VI+ R N +P+I P
Sbjct: 62 CQDVCHSLKAEPVQVIGNKFVIYRR--NDKKPQINFP 96
>gi|320540169|ref|ZP_08039824.1| putative RNA-binding protein [Serratia symbiotica str. Tucson]
gi|320029835|gb|EFW11859.1| putative RNA-binding protein [Serratia symbiotica str. Tucson]
Length = 97
Score = 37.7 bits (86), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
L +++ + K +A V +G G+ GV+ + + HE +KV
Sbjct: 3 LNNKQKQHLKGLAHPLKPVVMLGNHGLTEGVLAEIEQTLEHHELIKVKIAAEDRETKTLI 62
Query: 102 AEEIARLSGGIPIQIIGDDTVIFYR 126
A+ I R +G +Q+IG +T+I YR
Sbjct: 63 ADAIVRETGACNVQVIG-NTLILYR 86
>gi|311277846|ref|YP_003940077.1| hypothetical protein Entcl_0516 [Enterobacter cloacae SCF1]
gi|308747041|gb|ADO46793.1| protein of unknown function UPF0044 [Enterobacter cloacae SCF1]
Length = 110
Score = 37.7 bits (86), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 12/111 (10%)
Query: 16 LNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILN 75
+N+F S R ++Y + L+ +++ + K +A V +G G+ GV+
Sbjct: 1 MNRFQSQRKQKYTM-----------NLSTKQKQHLKGLAHPLKPVVMLGNNGLTEGVLAE 49
Query: 76 MHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTVIFYR 126
+ + HE +KV E I R +G +Q+IG T++ YR
Sbjct: 50 IEQALEHHELIKVKIASEDRETKTLIVEAIVRETGACNVQVIG-KTLVLYR 99
>gi|168045030|ref|XP_001774982.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673729|gb|EDQ60248.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 295
Score = 37.7 bits (86), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
LT E QK + +GR G ++ ++H +WK+ + V++ CK +
Sbjct: 91 LTTAEVEELVMQCQKEDRQLNLGRDGFTHNMLASVHDYWKRRQVVRIKCKGVPTVDMDNV 150
Query: 102 AEEIARLSGGIPIQIIGDDTVIFYRGKNY 130
+ +GG I G V +RG+NY
Sbjct: 151 CTVLEDKTGGKIISRAG-GVVYLFRGRNY 178
>gi|407790497|ref|ZP_11137591.1| hypothetical protein B3C1_09418 [Gallaecimonas xiamenensis 3-C-1]
gi|407204045|gb|EKE74027.1| hypothetical protein B3C1_09418 [Gallaecimonas xiamenensis 3-C-1]
Length = 97
Score = 37.7 bits (86), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 41 ELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHE 100
ELT ++R + K +A V +G G+ GV+ + + + HE +KV P+K ++ +
Sbjct: 2 ELTPKQRQHLKALAHPLKPVVLLGANGLTEGVLAEIELALEHHELIKVKA-PTKDRELKD 60
Query: 101 -FAEEIARLSGGIPIQIIGDDTVIFYRGKNYV 131
E IA+ + +Q IG V++ K V
Sbjct: 61 AIFETIAQQTNATKVQKIGHMLVLYRPAKEPV 92
>gi|260891167|ref|ZP_05902430.1| RNA-binding protein YhbY [Leptotrichia hofstadii F0254]
gi|260859194|gb|EEX73694.1| RNA-binding protein YhbY [Leptotrichia hofstadii F0254]
Length = 115
Score = 37.4 bits (85), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 2/110 (1%)
Query: 41 ELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKV-FCKPSKPGQIH 99
+L+ +ER + KK+A V IG+ G+ V+ ++ KK E +KV + S
Sbjct: 3 QLSSKERAFLKKLAHNLDPIVRIGKDGIDENVLKSISEVVKKRELIKVKILQNSSVEFDR 62
Query: 100 EFAEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEIMSPIDTLSKKKALE 149
E A EIA+ + + + IG +IF++ K +I + K K ++
Sbjct: 63 EMATEIAQKTKSVFVDKIG-SVLIFFKPKTTKDAKITPEFNEFRKSKKIK 111
>gi|356524038|ref|XP_003530640.1| PREDICTED: CRS2-associated factor 2, chloroplastic-like [Glycine
max]
Length = 593
Score = 37.4 bits (85), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 61 VPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDD 120
V +GR G+ ++ +H HWK+ K+ C + I +GG I +G
Sbjct: 216 VNLGRDGLTHNMLELIHSHWKRRRVCKIRCLGVPTVDMDNVCHHIEEKTGGKIIHRVG-G 274
Query: 121 TVIFYRGKNY 130
V +RG+NY
Sbjct: 275 VVYLFRGRNY 284
>gi|313891929|ref|ZP_07825530.1| RNA-binding protein, YhbY family [Dialister microaerophilus UPII
345-E]
gi|313119572|gb|EFR42763.1| RNA-binding protein, YhbY family [Dialister microaerophilus UPII
345-E]
Length = 96
Score = 37.4 bits (85), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
LTG+++ Y K +A K V IG+ G+ VI ++ K E +KV + I+
Sbjct: 2 LTGKQKQYLKGIASKFPAVVQIGKNGIEESVIESIFNALKARELIKVKINQNSVEDINNT 61
Query: 102 AEEIARLSGGIPIQIIGDDTVIFYRGK 128
A+ ++ +Q+IG + ++F + K
Sbjct: 62 AKFLSEKLSCELVQVIGRNCILFKQKK 88
>gi|218200589|gb|EEC83016.1| hypothetical protein OsI_28075 [Oryza sativa Indica Group]
Length = 365
Score = 37.4 bits (85), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 58 SNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQII 117
S + +G+ GV +I ++H HWK+ E V++ C + + +GG ++I
Sbjct: 162 SRQINLGKGGVTHNMIDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKTGG---KVI 218
Query: 118 --GDDTVIFYRGKNY 130
+ +I YRG+NY
Sbjct: 219 YRNINILILYRGRNY 233
>gi|117620746|ref|YP_857803.1| hypothetical protein AHA_3314 [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|145298035|ref|YP_001140876.1| hypothetical protein ASA_0999 [Aeromonas salmonicida subsp.
salmonicida A449]
gi|411008247|ref|ZP_11384576.1| hypothetical protein AaquA_00795 [Aeromonas aquariorum AAK1]
gi|418361759|ref|ZP_12962406.1| hypothetical protein IYQ_15483 [Aeromonas salmonicida subsp.
salmonicida 01-B526]
gi|423195543|ref|ZP_17182126.1| RNA-binding protein [Aeromonas hydrophila SSU]
gi|117562153|gb|ABK39101.1| conserved hypothetical protein [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|142850807|gb|ABO89128.1| conserved hypothetical protein [Aeromonas salmonicida subsp.
salmonicida A449]
gi|356686875|gb|EHI51465.1| hypothetical protein IYQ_15483 [Aeromonas salmonicida subsp.
salmonicida 01-B526]
gi|404633318|gb|EKB29867.1| RNA-binding protein [Aeromonas hydrophila SSU]
Length = 98
Score = 37.4 bits (85), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 3/97 (3%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
L +++ Y K +A V +G+ G+ GV+ + + HE +KV
Sbjct: 3 LNNKQKQYLKGLAHSLKPVVLLGQHGLTEGVLAEIDLALNHHELIKVKVASEDREMKQLV 62
Query: 102 AEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEIMSP 138
+ I R +G + +Q IG + YR N +P+I P
Sbjct: 63 MDAIVRETGAVKVQSIG-HVLTIYRQAN--EPKIQLP 96
>gi|336449998|ref|ZP_08620455.1| putative RNA-binding protein, YhbY family [Idiomarina sp. A28L]
gi|336283155|gb|EGN76362.1| putative RNA-binding protein, YhbY family [Idiomarina sp. A28L]
Length = 97
Score = 37.4 bits (85), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 41 ELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHE 100
+L+ +++ + K +A V +G G+ GV+ + + + HE +K+
Sbjct: 2 QLSNKQKQFLKGLAHPLKPVVLLGGNGLTEGVLAEIELALEHHELIKIKVPEEDREMRQA 61
Query: 101 FAEEIARLSGGIPIQIIGDDTVIFYR 126
+ I R + G+ +Q+IG T++ YR
Sbjct: 62 IYDAIVRETAGVQVQVIG-KTLVLYR 86
>gi|115475115|ref|NP_001061154.1| Os08g0188000 [Oryza sativa Japonica Group]
gi|113623123|dbj|BAF23068.1| Os08g0188000, partial [Oryza sativa Japonica Group]
Length = 361
Score = 37.4 bits (85), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 58 SNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQII 117
S + +G+ GV +I ++H HWK+ E V++ C + + +GG ++I
Sbjct: 158 SRQINLGKGGVTHNMIDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKTGG---KVI 214
Query: 118 --GDDTVIFYRGKNY 130
+ +I YRG+NY
Sbjct: 215 YRNINILILYRGRNY 229
>gi|22329043|ref|NP_194830.2| CRS2-associated factor 1 [Arabidopsis thaliana]
gi|75161464|sp|Q8VYD9.1|CAF1M_ARATH RecName: Full=CRS2-associated factor 1, mitochondrial; Flags:
Precursor
gi|18176015|gb|AAL59968.1| unknown protein [Arabidopsis thaliana]
gi|20465409|gb|AAM20129.1| unknown protein [Arabidopsis thaliana]
gi|332660446|gb|AEE85846.1| CRS2-associated factor 1 [Arabidopsis thaliana]
Length = 405
Score = 37.4 bits (85), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 26/111 (23%)
Query: 31 KVQGPVVKPHELTGEERFYFKKMAQ--KRSNYVPIGRRGVFGGVILNMHMHWKKHETVKV 88
K+QG LT ER + ++ Q K V +GR G+ ++ +++ HWK E V+V
Sbjct: 153 KIQGA-----SLTEAERKFLVELCQRNKTKRQVNLGRDGLTHNMLNDVYNHWKHAEAVRV 207
Query: 89 FC--KPS---KPGQIH----EFAEEIARLSGGIPIQIIGDDTVIFYRGKNY 130
C P+ K H F + +++ SG T++ YRG+NY
Sbjct: 208 KCLGVPTLDMKNVIFHLEDKTFGQVVSKHSG----------TLVLYRGRNY 248
>gi|143955290|sp|Q0J7J7.2|CAF2M_ORYSJ RecName: Full=CRS2-associated factor 2, mitochondrial; Flags:
Precursor
gi|222640037|gb|EEE68169.1| hypothetical protein OsJ_26288 [Oryza sativa Japonica Group]
Length = 366
Score = 37.4 bits (85), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 58 SNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQII 117
S + +G+ GV +I ++H HWK+ E V++ C + + +GG ++I
Sbjct: 163 SRQINLGKGGVTHNMIDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKTGG---KVI 219
Query: 118 --GDDTVIFYRGKNY 130
+ +I YRG+NY
Sbjct: 220 YRNINILILYRGRNY 234
>gi|255563935|ref|XP_002522967.1| conserved hypothetical protein [Ricinus communis]
gi|223537779|gb|EEF39397.1| conserved hypothetical protein [Ricinus communis]
Length = 409
Score = 37.4 bits (85), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 58 SNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQII 117
S + +G+ GV ++ ++H HWKK E V++ C + + SGG +II
Sbjct: 203 SRQINLGKGGVTHNMLDDIHNHWKKAEAVRIKCLGVPTLDMDNVCFHLEDKSGG---KII 259
Query: 118 GD--DTVIFYRGKNY 130
+ ++ YRG+NY
Sbjct: 260 YRHINILLLYRGRNY 274
>gi|297836246|ref|XP_002886005.1| hypothetical protein ARALYDRAFT_480467 [Arabidopsis lyrata subsp.
lyrata]
gi|297331845|gb|EFH62264.1| hypothetical protein ARALYDRAFT_480467 [Arabidopsis lyrata subsp.
lyrata]
Length = 700
Score = 37.4 bits (85), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
LT EE K + + +GR G+ ++ N+H WK+ K+ CK + +
Sbjct: 243 LTKEEIRELVTSCLKTTRQLNMGRDGLTHNMLNNIHDLWKRRRVCKIKCKGVCTVDMDKV 302
Query: 102 AEEIARLSGGIPIQIIGDDTVIFYRGKNY 130
E++ GG I G + +RG+NY
Sbjct: 303 CEQLEEKIGGKVIYRRG-GVLFLFRGRNY 330
>gi|18399222|ref|NP_565462.1| CRS2-associated factor 1 [Arabidopsis thaliana]
gi|75266026|sp|Q9SL79.2|CAF1P_ARATH RecName: Full=CRS2-associated factor 1, chloroplastic; AltName:
Full=Chloroplastic group IIA intron splicing facilitator
CRS2-associated factor 1; Flags: Precursor
gi|15028051|gb|AAK76556.1| unknown protein [Arabidopsis thaliana]
gi|20197570|gb|AAD24394.2| expressed protein [Arabidopsis thaliana]
gi|28393847|gb|AAO42331.1| unknown protein [Arabidopsis thaliana]
gi|330251862|gb|AEC06956.1| CRS2-associated factor 1 [Arabidopsis thaliana]
Length = 701
Score = 37.0 bits (84), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
LT EE K + + +GR G+ ++ N+H WK+ K+ CK +
Sbjct: 243 LTKEEVRELVTSCLKTTRQLNMGRDGLTHNMLNNIHDLWKRRRVCKIKCKGVCTVDMDNV 302
Query: 102 AEEIARLSGGIPIQIIGDDTVIFYRGKNY 130
E++ GG I G + +RG+NY
Sbjct: 303 CEQLEEKIGGKVIYRRG-GVLFLFRGRNY 330
>gi|224110940|ref|XP_002315689.1| predicted protein [Populus trichocarpa]
gi|222864729|gb|EEF01860.1| predicted protein [Populus trichocarpa]
Length = 506
Score = 37.0 bits (84), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 61 VPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDD 120
V +G G+ ++ +H HWK+ KV CK + + +GG I +G
Sbjct: 161 VNLGEDGLTHNMLELVHSHWKRRRVCKVRCKGVPTVDMDNVCRHLEEKTGGKIIHRVG-G 219
Query: 121 TVIFYRGKNY 130
V +RG+NY
Sbjct: 220 VVYLFRGRNY 229
>gi|168040806|ref|XP_001772884.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675795|gb|EDQ62286.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 463
Score = 37.0 bits (84), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
LT E A+K + +GR G+ ++ +H HWK+ KV CK +
Sbjct: 91 LTSAEVRELVTKARKEPRQINLGRDGLTHNMLNLVHEHWKRRRVCKVKCKGVPTVDMDNV 150
Query: 102 AEEIARLSGGIPIQIIGDDTVIFYRGKNY 130
+ +GG I G V +RG+NY
Sbjct: 151 CRVLEEKTGGKIILRQG-GAVYLFRGRNY 178
>gi|334705611|ref|ZP_08521477.1| 23S rRNA methyltransferase J [Aeromonas caviae Ae398]
Length = 98
Score = 37.0 bits (84), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 3/97 (3%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
L +++ Y K +A V +G+ G+ GV+ + + HE +KV
Sbjct: 3 LNNKQKQYLKGLAHSLKPVVLLGQHGLTEGVLAEIDLALNHHELIKVKVASEDREMKQLV 62
Query: 102 AEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEIMSP 138
+ I R +G I +Q +G I+ + K +P+I P
Sbjct: 63 MDAIVRETGAIKVQSMGHVLTIYRQAK---EPKIQLP 96
>gi|417908018|ref|ZP_12551785.1| RNA-binding protein, YhbY family [Staphylococcus capitis VCU116]
gi|341595105|gb|EGS37783.1| RNA-binding protein, YhbY family [Staphylococcus capitis VCU116]
Length = 96
Score = 37.0 bits (84), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
LTG+++ Y + +A IG+ G+ +I + +K E +K+ + +E
Sbjct: 2 LTGKQKRYLRSLAHNTDPTFQIGKGGINENMISQIDETLEKRELIKIHVLQNNFDDKNEL 61
Query: 102 AEEIARLSGGIPIQIIGDDTVI---FYRGKNYVQP 133
A E+++ + +Q+IG V+ F K+ V P
Sbjct: 62 ANELSQATKSELVQVIGSMIVLYKEFQENKDIVLP 96
>gi|356560247|ref|XP_003548405.1| PREDICTED: CRS2-associated factor 1, mitochondrial-like [Glycine
max]
Length = 396
Score = 37.0 bits (84), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 56 KRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQ 115
K + +V +GR G+ ++ +H HWK E V++ C ++ ++ + G I
Sbjct: 175 KTNRHVNLGRDGLTHNMLNVIHNHWKFAEAVRIKCMGVPTMDMNNICTQLEDKTFGKVIF 234
Query: 116 IIGDDTVIFYRGKNY 130
G T+I YRG+NY
Sbjct: 235 RHG-GTLILYRGRNY 248
>gi|85058347|ref|YP_454049.1| hypothetical protein SG0369 [Sodalis glossinidius str. 'morsitans']
gi|84778867|dbj|BAE73644.1| conserved hypothetical protein [Sodalis glossinidius str.
'morsitans']
Length = 97
Score = 37.0 bits (84), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
L +++ + K +A V +G G+ GV+ + + HE +KV +
Sbjct: 3 LNNKQKQHLKGLAHSLKPVVMLGNNGLTEGVLAEIEQALEHHELIKVKIAAEEHKTKTLI 62
Query: 102 AEEIARLSGGIPIQIIGDDTVIFYR 126
A+ I R SG +Q+IG + ++ YR
Sbjct: 63 ADAIVRESGASKVQVIG-NILVLYR 86
>gi|224124340|ref|XP_002319307.1| predicted protein [Populus trichocarpa]
gi|222857683|gb|EEE95230.1| predicted protein [Populus trichocarpa]
Length = 354
Score = 37.0 bits (84), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 58 SNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQII 117
S + +G+ GV ++ ++H HWK+ E V++ C + + SGG +
Sbjct: 157 SRQINLGKGGVTHNMLDDIHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEDKSGG-KVVYR 215
Query: 118 GDDTVIFYRGKNY 130
+ ++ YRG+NY
Sbjct: 216 NINILLLYRGRNY 228
>gi|238755148|ref|ZP_04616494.1| Transcription elongation factor GreA [Yersinia ruckeri ATCC 29473]
gi|238706595|gb|EEP98966.1| Transcription elongation factor GreA [Yersinia ruckeri ATCC 29473]
Length = 97
Score = 37.0 bits (84), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
L +++ + K +A V +G G+ GV+ + + HE +KV +
Sbjct: 3 LNNKQKQHLKSLAHPLKPVVMLGNNGLTEGVLAEIEQTLEHHELIKVKITAEERETKALI 62
Query: 102 AEEIARLSGGIPIQIIGDDTVIFYR 126
A+ I R +G +QIIG + ++ YR
Sbjct: 63 ADAIVRETGAANVQIIG-NILVLYR 86
>gi|402815731|ref|ZP_10865323.1| putative RNA-binding protein YqeI [Paenibacillus alvei DSM 29]
gi|402506771|gb|EJW17294.1| putative RNA-binding protein YqeI [Paenibacillus alvei DSM 29]
Length = 96
Score = 37.0 bits (84), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 46/94 (48%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
LTG+++ Y + +A +G+ G+ ++ ++ +K E +KV + E
Sbjct: 2 LTGKQKRYLRSLAHHLQPIFQVGKGGMNDQLVRHVEDAIEKRELMKVSVLNNCLEDPREI 61
Query: 102 AEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEI 135
EE+A SG +Q+IG V++ ++ Q E+
Sbjct: 62 GEELASRSGSELVQVIGKTIVLYKESTDHKQIEL 95
>gi|374603052|ref|ZP_09676037.1| dihydrodipicolinate reductase [Paenibacillus dendritiformis C454]
gi|374391365|gb|EHQ62702.1| dihydrodipicolinate reductase [Paenibacillus dendritiformis C454]
Length = 96
Score = 37.0 bits (84), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 44/94 (46%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
LTG+++ Y + +A +G+ G +I ++ + E +KV + E
Sbjct: 2 LTGKQKRYLRSLAHHVQPIFQVGKGGTNDQLIRHIEEALEVRELIKVSILNNCMDDRFEV 61
Query: 102 AEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEI 135
AEE+A SG +Q+IG V++ + Q E+
Sbjct: 62 AEELASRSGAELVQVIGKTIVLYKESAEHKQIEL 95
>gi|14596153|gb|AAK68804.1| Unknown protein [Arabidopsis thaliana]
Length = 284
Score = 37.0 bits (84), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 26/111 (23%)
Query: 31 KVQGPVVKPHELTGEERFYFKKMAQ--KRSNYVPIGRRGVFGGVILNMHMHWKKHETVKV 88
K+QG LT ER + ++ Q K V +GR G+ ++ +++ HWK E V+V
Sbjct: 153 KIQGA-----SLTEAERKFLVELCQRNKTKRQVNLGRDGLTHNMLNDVYNHWKHAEAVRV 207
Query: 89 FC--KPS---KPGQIH----EFAEEIARLSGGIPIQIIGDDTVIFYRGKNY 130
C P+ K H F + +++ SG T++ YRG+NY
Sbjct: 208 KCLGVPTLDMKNVIFHLEDKTFGQVVSKHSG----------TLVLYRGRNY 248
>gi|22124594|ref|NP_668017.1| hypothetical protein y0680 [Yersinia pestis KIM10+]
gi|45440433|ref|NP_991972.1| RNA-binding protein [Yersinia pestis biovar Microtus str. 91001]
gi|51594824|ref|YP_069015.1| hypothetical protein YPTB0472 [Yersinia pseudotuberculosis IP
32953]
gi|108806052|ref|YP_649968.1| hypothetical protein YPA_0054 [Yersinia pestis Antiqua]
gi|108813408|ref|YP_649175.1| hypothetical protein YPN_3248 [Yersinia pestis Nepal516]
gi|145600800|ref|YP_001164876.1| hypothetical protein YPDSF_3553 [Yersinia pestis Pestoides F]
gi|153947563|ref|YP_001402558.1| hypothetical protein YpsIP31758_3604 [Yersinia pseudotuberculosis
IP 31758]
gi|153997281|ref|ZP_02022381.1| hypothetical protein YPE_3725 [Yersinia pestis CA88-4125]
gi|162420347|ref|YP_001608278.1| hypothetical protein YpAngola_A3983 [Yersinia pestis Angola]
gi|165928184|ref|ZP_02224016.1| conserved hypothetical protein TIGR00253 [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165937407|ref|ZP_02225970.1| conserved hypothetical protein TIGR00253 [Yersinia pestis biovar
Orientalis str. IP275]
gi|166011415|ref|ZP_02232313.1| conserved hypothetical protein TIGR00253 [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166213973|ref|ZP_02240008.1| conserved hypothetical protein TIGR00253 [Yersinia pestis biovar
Antiqua str. B42003004]
gi|167401325|ref|ZP_02306825.1| conserved hypothetical protein TIGR00253 [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167420615|ref|ZP_02312368.1| conserved hypothetical protein TIGR00253 [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167423443|ref|ZP_02315196.1| conserved hypothetical protein TIGR00253 [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|167470194|ref|ZP_02334898.1| hypothetical protein YpesF_20455 [Yersinia pestis FV-1]
gi|170025953|ref|YP_001722458.1| hypothetical protein YPK_3738 [Yersinia pseudotuberculosis YPIII]
gi|186893833|ref|YP_001870945.1| hypothetical protein YPTS_0502 [Yersinia pseudotuberculosis PB1/+]
gi|218930518|ref|YP_002348393.1| hypothetical protein YPO3504 [Yersinia pestis CO92]
gi|229839156|ref|ZP_04459315.1| predicted RNA-binding protein [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229896645|ref|ZP_04511812.1| predicted RNA-binding protein [Yersinia pestis Pestoides A]
gi|229899720|ref|ZP_04514861.1| predicted RNA-binding protein [Yersinia pestis biovar Orientalis
str. India 195]
gi|229903882|ref|ZP_04518995.1| predicted RNA-binding protein [Yersinia pestis Nepal516]
gi|270489128|ref|ZP_06206202.1| RNA-binding protein, YhbY family [Yersinia pestis KIM D27]
gi|384138645|ref|YP_005521347.1| hypothetical protein A1122_08380 [Yersinia pestis A1122]
gi|384413203|ref|YP_005622565.1| putative RNA-binding protein [Yersinia pestis biovar Medievalis
str. Harbin 35]
gi|420548662|ref|ZP_15046454.1| RNA-binding protein YhbY [Yersinia pestis PY-01]
gi|420553986|ref|ZP_15051201.1| RNA-binding protein YhbY [Yersinia pestis PY-02]
gi|420559589|ref|ZP_15056070.1| RNA-binding protein YhbY [Yersinia pestis PY-03]
gi|420564971|ref|ZP_15060906.1| RNA-binding protein YhbY [Yersinia pestis PY-04]
gi|420570015|ref|ZP_15065488.1| RNA-binding protein YhbY [Yersinia pestis PY-05]
gi|420575677|ref|ZP_15070609.1| RNA-binding protein YhbY [Yersinia pestis PY-06]
gi|420581012|ref|ZP_15075464.1| RNA-binding protein YhbY [Yersinia pestis PY-07]
gi|420586355|ref|ZP_15080298.1| RNA-binding protein YhbY [Yersinia pestis PY-08]
gi|420591459|ref|ZP_15084890.1| RNA-binding protein YhbY [Yersinia pestis PY-09]
gi|420596846|ref|ZP_15089732.1| RNA-binding protein YhbY [Yersinia pestis PY-10]
gi|420602525|ref|ZP_15094777.1| RNA-binding protein YhbY [Yersinia pestis PY-11]
gi|420607917|ref|ZP_15099664.1| RNA-binding protein YhbY [Yersinia pestis PY-12]
gi|420613344|ref|ZP_15104530.1| RNA-binding protein YhbY [Yersinia pestis PY-13]
gi|420618692|ref|ZP_15109191.1| CRS1 / YhbY domain protein [Yersinia pestis PY-14]
gi|420624027|ref|ZP_15113999.1| RNA-binding protein YhbY [Yersinia pestis PY-15]
gi|420629000|ref|ZP_15118510.1| RNA-binding protein YhbY [Yersinia pestis PY-16]
gi|420634205|ref|ZP_15123175.1| RNA-binding protein YhbY [Yersinia pestis PY-19]
gi|420639425|ref|ZP_15127872.1| RNA-binding protein YhbY [Yersinia pestis PY-25]
gi|420644884|ref|ZP_15132862.1| RNA-binding protein YhbY [Yersinia pestis PY-29]
gi|420650187|ref|ZP_15137642.1| RNA-binding protein YhbY [Yersinia pestis PY-32]
gi|420655798|ref|ZP_15142688.1| RNA-binding protein YhbY [Yersinia pestis PY-34]
gi|420661248|ref|ZP_15147559.1| RNA-binding protein YhbY [Yersinia pestis PY-36]
gi|420666600|ref|ZP_15152382.1| RNA-binding protein YhbY [Yersinia pestis PY-42]
gi|420671469|ref|ZP_15156823.1| CRS1 / YhbY domain protein [Yersinia pestis PY-45]
gi|420676812|ref|ZP_15161678.1| RNA-binding protein YhbY [Yersinia pestis PY-46]
gi|420682360|ref|ZP_15166686.1| RNA-binding protein YhbY [Yersinia pestis PY-47]
gi|420687772|ref|ZP_15171501.1| RNA-binding protein YhbY [Yersinia pestis PY-48]
gi|420693012|ref|ZP_15176091.1| RNA-binding protein YhbY [Yersinia pestis PY-52]
gi|420698781|ref|ZP_15181177.1| RNA-binding protein YhbY [Yersinia pestis PY-53]
gi|420704630|ref|ZP_15185803.1| CRS1 / YhbY domain protein [Yersinia pestis PY-54]
gi|420709925|ref|ZP_15190530.1| RNA-binding protein YhbY [Yersinia pestis PY-55]
gi|420715415|ref|ZP_15195405.1| RNA-binding protein YhbY [Yersinia pestis PY-56]
gi|420720937|ref|ZP_15200131.1| RNA-binding protein YhbY [Yersinia pestis PY-58]
gi|420726397|ref|ZP_15204946.1| RNA-binding protein YhbY [Yersinia pestis PY-59]
gi|420731905|ref|ZP_15209896.1| RNA-binding protein YhbY [Yersinia pestis PY-60]
gi|420736896|ref|ZP_15214407.1| RNA-binding protein YhbY [Yersinia pestis PY-61]
gi|420742383|ref|ZP_15219336.1| RNA-binding protein YhbY [Yersinia pestis PY-63]
gi|420748231|ref|ZP_15224266.1| RNA-binding protein YhbY [Yersinia pestis PY-64]
gi|420753517|ref|ZP_15229005.1| RNA-binding protein YhbY [Yersinia pestis PY-65]
gi|420759456|ref|ZP_15233770.1| RNA-binding protein YhbY [Yersinia pestis PY-66]
gi|420764682|ref|ZP_15238388.1| RNA-binding protein YhbY [Yersinia pestis PY-71]
gi|420769918|ref|ZP_15243080.1| RNA-binding protein YhbY [Yersinia pestis PY-72]
gi|420774887|ref|ZP_15247587.1| RNA-binding protein YhbY [Yersinia pestis PY-76]
gi|420780522|ref|ZP_15252540.1| RNA-binding protein YhbY [Yersinia pestis PY-88]
gi|420786113|ref|ZP_15257425.1| RNA-binding protein YhbY [Yersinia pestis PY-89]
gi|420791169|ref|ZP_15261968.1| CRS1 / YhbY domain protein [Yersinia pestis PY-90]
gi|420796731|ref|ZP_15266975.1| RNA-binding protein YhbY [Yersinia pestis PY-91]
gi|420801834|ref|ZP_15271556.1| RNA-binding protein YhbY [Yersinia pestis PY-92]
gi|420807179|ref|ZP_15276403.1| RNA-binding protein YhbY [Yersinia pestis PY-93]
gi|420812567|ref|ZP_15281233.1| CRS1 / YhbY domain protein [Yersinia pestis PY-94]
gi|420818070|ref|ZP_15286217.1| RNA-binding protein YhbY [Yersinia pestis PY-95]
gi|420823373|ref|ZP_15290964.1| RNA-binding protein YhbY [Yersinia pestis PY-96]
gi|420828446|ref|ZP_15295531.1| RNA-binding protein YhbY [Yersinia pestis PY-98]
gi|420834060|ref|ZP_15300599.1| RNA-binding protein YhbY [Yersinia pestis PY-99]
gi|420838992|ref|ZP_15305061.1| RNA-binding protein YhbY [Yersinia pestis PY-100]
gi|420844193|ref|ZP_15309777.1| RNA-binding protein YhbY [Yersinia pestis PY-101]
gi|420849854|ref|ZP_15314858.1| RNA-binding protein YhbY [Yersinia pestis PY-102]
gi|420855539|ref|ZP_15319660.1| RNA-binding protein YhbY [Yersinia pestis PY-103]
gi|420860644|ref|ZP_15324159.1| RNA-binding protein YhbY [Yersinia pestis PY-113]
gi|421765014|ref|ZP_16201801.1| hypothetical protein INS_18146 [Yersinia pestis INS]
gi|21957397|gb|AAM84268.1|AE013670_5 hypothetical protein y0680 [Yersinia pestis KIM10+]
gi|45435290|gb|AAS60849.1| Predicted RNA-binding protein containing KH domain, possibly
ribosomal protein [Yersinia pestis biovar Microtus str.
91001]
gi|51588106|emb|CAH19712.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP
32953]
gi|108777056|gb|ABG19575.1| hypothetical protein YPN_3248 [Yersinia pestis Nepal516]
gi|108777965|gb|ABG12023.1| hypothetical protein YPA_0054 [Yersinia pestis Antiqua]
gi|115349129|emb|CAL22092.1| conserved hypothetical protein [Yersinia pestis CO92]
gi|145212496|gb|ABP41903.1| hypothetical protein YPDSF_3553 [Yersinia pestis Pestoides F]
gi|149288918|gb|EDM38998.1| hypothetical protein YPE_3725 [Yersinia pestis CA88-4125]
gi|152959058|gb|ABS46519.1| conserved hypothetical protein TIGR00253 [Yersinia
pseudotuberculosis IP 31758]
gi|162353162|gb|ABX87110.1| conserved hypothetical protein TIGR00253 [Yersinia pestis Angola]
gi|165914512|gb|EDR33126.1| conserved hypothetical protein TIGR00253 [Yersinia pestis biovar
Orientalis str. IP275]
gi|165919871|gb|EDR37172.1| conserved hypothetical protein TIGR00253 [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165989799|gb|EDR42100.1| conserved hypothetical protein TIGR00253 [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166204768|gb|EDR49248.1| conserved hypothetical protein TIGR00253 [Yersinia pestis biovar
Antiqua str. B42003004]
gi|166961421|gb|EDR57442.1| conserved hypothetical protein TIGR00253 [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167049350|gb|EDR60758.1| conserved hypothetical protein TIGR00253 [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167057613|gb|EDR67359.1| conserved hypothetical protein TIGR00253 [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|169752487|gb|ACA70005.1| protein of unknown function UPF0044 [Yersinia pseudotuberculosis
YPIII]
gi|186696859|gb|ACC87488.1| protein of unknown function UPF0044 [Yersinia pseudotuberculosis
PB1/+]
gi|229679652|gb|EEO75755.1| predicted RNA-binding protein [Yersinia pestis Nepal516]
gi|229687212|gb|EEO79287.1| predicted RNA-binding protein [Yersinia pestis biovar Orientalis
str. India 195]
gi|229695522|gb|EEO85569.1| predicted RNA-binding protein [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229700423|gb|EEO88455.1| predicted RNA-binding protein [Yersinia pestis Pestoides A]
gi|270337632|gb|EFA48409.1| RNA-binding protein, YhbY family [Yersinia pestis KIM D27]
gi|320013707|gb|ADV97278.1| putative RNA-binding protein [Yersinia pestis biovar Medievalis
str. Harbin 35]
gi|342853774|gb|AEL72327.1| hypothetical protein A1122_08380 [Yersinia pestis A1122]
gi|391422327|gb|EIQ84915.1| RNA-binding protein YhbY [Yersinia pestis PY-01]
gi|391422514|gb|EIQ85085.1| RNA-binding protein YhbY [Yersinia pestis PY-02]
gi|391422677|gb|EIQ85232.1| RNA-binding protein YhbY [Yersinia pestis PY-03]
gi|391437473|gb|EIQ98326.1| RNA-binding protein YhbY [Yersinia pestis PY-04]
gi|391438556|gb|EIQ99291.1| RNA-binding protein YhbY [Yersinia pestis PY-05]
gi|391442301|gb|EIR02709.1| RNA-binding protein YhbY [Yersinia pestis PY-06]
gi|391454444|gb|EIR13656.1| RNA-binding protein YhbY [Yersinia pestis PY-07]
gi|391454977|gb|EIR14133.1| RNA-binding protein YhbY [Yersinia pestis PY-08]
gi|391456982|gb|EIR15961.1| RNA-binding protein YhbY [Yersinia pestis PY-09]
gi|391470196|gb|EIR27884.1| RNA-binding protein YhbY [Yersinia pestis PY-10]
gi|391471173|gb|EIR28756.1| RNA-binding protein YhbY [Yersinia pestis PY-11]
gi|391472455|gb|EIR29913.1| RNA-binding protein YhbY [Yersinia pestis PY-12]
gi|391486086|gb|EIR42155.1| RNA-binding protein YhbY [Yersinia pestis PY-13]
gi|391487756|gb|EIR43657.1| RNA-binding protein YhbY [Yersinia pestis PY-15]
gi|391487847|gb|EIR43741.1| CRS1 / YhbY domain protein [Yersinia pestis PY-14]
gi|391502292|gb|EIR56605.1| RNA-binding protein YhbY [Yersinia pestis PY-19]
gi|391502480|gb|EIR56771.1| RNA-binding protein YhbY [Yersinia pestis PY-16]
gi|391507349|gb|EIR61183.1| RNA-binding protein YhbY [Yersinia pestis PY-25]
gi|391518156|gb|EIR70890.1| RNA-binding protein YhbY [Yersinia pestis PY-29]
gi|391519481|gb|EIR72111.1| RNA-binding protein YhbY [Yersinia pestis PY-34]
gi|391520280|gb|EIR72841.1| RNA-binding protein YhbY [Yersinia pestis PY-32]
gi|391532721|gb|EIR84076.1| RNA-binding protein YhbY [Yersinia pestis PY-36]
gi|391535482|gb|EIR86546.1| RNA-binding protein YhbY [Yersinia pestis PY-42]
gi|391538016|gb|EIR88853.1| CRS1 / YhbY domain protein [Yersinia pestis PY-45]
gi|391550945|gb|EIS00504.1| RNA-binding protein YhbY [Yersinia pestis PY-46]
gi|391551258|gb|EIS00784.1| RNA-binding protein YhbY [Yersinia pestis PY-47]
gi|391551597|gb|EIS01092.1| RNA-binding protein YhbY [Yersinia pestis PY-48]
gi|391565884|gb|EIS13935.1| RNA-binding protein YhbY [Yersinia pestis PY-52]
gi|391567241|gb|EIS15129.1| RNA-binding protein YhbY [Yersinia pestis PY-53]
gi|391571231|gb|EIS18609.1| CRS1 / YhbY domain protein [Yersinia pestis PY-54]
gi|391580553|gb|EIS26534.1| RNA-binding protein YhbY [Yersinia pestis PY-55]
gi|391582383|gb|EIS28144.1| RNA-binding protein YhbY [Yersinia pestis PY-56]
gi|391592965|gb|EIS37328.1| RNA-binding protein YhbY [Yersinia pestis PY-58]
gi|391596305|gb|EIS40254.1| RNA-binding protein YhbY [Yersinia pestis PY-60]
gi|391597055|gb|EIS40911.1| RNA-binding protein YhbY [Yersinia pestis PY-59]
gi|391610770|gb|EIS53016.1| RNA-binding protein YhbY [Yersinia pestis PY-61]
gi|391611134|gb|EIS53338.1| RNA-binding protein YhbY [Yersinia pestis PY-63]
gi|391613169|gb|EIS55165.1| RNA-binding protein YhbY [Yersinia pestis PY-64]
gi|391623983|gb|EIS64679.1| RNA-binding protein YhbY [Yersinia pestis PY-65]
gi|391627796|gb|EIS67966.1| RNA-binding protein YhbY [Yersinia pestis PY-66]
gi|391634401|gb|EIS73681.1| RNA-binding protein YhbY [Yersinia pestis PY-71]
gi|391636214|gb|EIS75275.1| RNA-binding protein YhbY [Yersinia pestis PY-72]
gi|391646474|gb|EIS84212.1| RNA-binding protein YhbY [Yersinia pestis PY-76]
gi|391649761|gb|EIS87117.1| RNA-binding protein YhbY [Yersinia pestis PY-88]
gi|391654081|gb|EIS90947.1| RNA-binding protein YhbY [Yersinia pestis PY-89]
gi|391659465|gb|EIS95745.1| CRS1 / YhbY domain protein [Yersinia pestis PY-90]
gi|391667056|gb|EIT02431.1| RNA-binding protein YhbY [Yersinia pestis PY-91]
gi|391676377|gb|EIT10790.1| RNA-binding protein YhbY [Yersinia pestis PY-93]
gi|391676838|gb|EIT11202.1| RNA-binding protein YhbY [Yersinia pestis PY-92]
gi|391677280|gb|EIT11601.1| CRS1 / YhbY domain protein [Yersinia pestis PY-94]
gi|391690425|gb|EIT23452.1| RNA-binding protein YhbY [Yersinia pestis PY-95]
gi|391692991|gb|EIT25778.1| RNA-binding protein YhbY [Yersinia pestis PY-96]
gi|391694693|gb|EIT27328.1| RNA-binding protein YhbY [Yersinia pestis PY-98]
gi|391707777|gb|EIT39093.1| RNA-binding protein YhbY [Yersinia pestis PY-99]
gi|391710674|gb|EIT41706.1| RNA-binding protein YhbY [Yersinia pestis PY-100]
gi|391711205|gb|EIT42187.1| RNA-binding protein YhbY [Yersinia pestis PY-101]
gi|391723581|gb|EIT53249.1| RNA-binding protein YhbY [Yersinia pestis PY-102]
gi|391724049|gb|EIT53666.1| RNA-binding protein YhbY [Yersinia pestis PY-103]
gi|391726998|gb|EIT56275.1| RNA-binding protein YhbY [Yersinia pestis PY-113]
gi|411173920|gb|EKS43957.1| hypothetical protein INS_18146 [Yersinia pestis INS]
Length = 97
Score = 36.6 bits (83), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
L +++ + K +A V +G G+ GV+ + HE +KV +
Sbjct: 3 LNNKQKQHLKSLAHPLKPVVMLGNNGLTEGVLAEIEQTLAHHELIKVKITAEERETKALI 62
Query: 102 AEEIARLSGGIPIQIIGDDTVIFYR 126
A+ I R +G + +Q+IG + ++ YR
Sbjct: 63 ADAIVRETGAVNVQMIG-NILVLYR 86
>gi|226530577|ref|NP_001147995.1| LOC100281604 [Zea mays]
gi|195615022|gb|ACG29341.1| CRS2-associated factor 1 [Zea mays]
Length = 362
Score = 36.6 bits (83), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 58 SNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQII 117
S + +G+ GV ++ ++H HWK+ E V++ C + + +GG +++
Sbjct: 159 SRQINLGKGGVTHNMLDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKTGG---KVV 215
Query: 118 GD--DTVIFYRGKNY 130
+ +I YRG+NY
Sbjct: 216 SRSINIIILYRGRNY 230
>gi|42573097|ref|NP_974645.1| CRS2-associated factor 1 [Arabidopsis thaliana]
gi|332660445|gb|AEE85845.1| CRS2-associated factor 1 [Arabidopsis thaliana]
Length = 341
Score = 36.6 bits (83), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 12/104 (11%)
Query: 31 KVQGPVVKPHELTGEERFYFKKMAQ--KRSNYVPIGRRGVFGGVILNMHMHWKKHETVKV 88
K+QG LT ER + ++ Q K V +GR G+ ++ +++ HWK E V+V
Sbjct: 153 KIQGA-----SLTEAERKFLVELCQRNKTKRQVNLGRDGLTHNMLNDVYNHWKHAEAVRV 207
Query: 89 FCKPSKPGQIHEFAEEIARLSGGIPIQIIG--DDTVIFYRGKNY 130
C + + + G Q++ T++ YRG+NY
Sbjct: 208 KCLGVPTLDMKNVIFHLEDKTFG---QVVSKHSGTLVLYRGRNY 248
>gi|238014734|gb|ACR38402.1| unknown [Zea mays]
gi|413921148|gb|AFW61080.1| CRS2-associated factor 1 [Zea mays]
Length = 362
Score = 36.6 bits (83), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 58 SNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQII 117
S + +G+ GV ++ ++H HWK+ E V++ C + + +GG +++
Sbjct: 159 SRQINLGKGGVTHNMLDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKTGG---KVV 215
Query: 118 GD--DTVIFYRGKNY 130
+ +I YRG+NY
Sbjct: 216 SRSINIIILYRGRNY 230
>gi|413921149|gb|AFW61081.1| hypothetical protein ZEAMMB73_173916 [Zea mays]
Length = 291
Score = 36.6 bits (83), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 58 SNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQII 117
S + +G+ GV ++ ++H HWK+ E V++ C + + +GG +++
Sbjct: 159 SRQINLGKGGVTHNMLDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKTGG---KVV 215
Query: 118 GD--DTVIFYRGKNY 130
+ +I YRG+NY
Sbjct: 216 SRSINIIILYRGRNY 230
>gi|356530475|ref|XP_003533806.1| PREDICTED: CRS2-associated factor 2, mitochondrial-like [Glycine
max]
Length = 388
Score = 36.6 bits (83), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 19/125 (15%)
Query: 46 ERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEI 105
ER+ A++ + +G+ GV ++ ++H HWKK E V++ C + +
Sbjct: 152 ERYRHSDCARQ----INLGKGGVTHNMLGDIHNHWKKAEVVRIKCLGVPTLDMDNVCFHL 207
Query: 106 ARLSGGIPIQII--GDDTVIFYRGKNY------VQPEIM----SPIDTLSKKKALEKSKY 153
SGG ++I + ++ YRG+NY V P ++ +PI K +E Y
Sbjct: 208 EDKSGG---KVIYRNINILLLYRGRNYDTKNCPVIPLMLWKPYAPIYPRLVKNVIEGLTY 264
Query: 154 EQSLE 158
E++ E
Sbjct: 265 EETKE 269
>gi|242080803|ref|XP_002445170.1| hypothetical protein SORBIDRAFT_07g005220 [Sorghum bicolor]
gi|241941520|gb|EES14665.1| hypothetical protein SORBIDRAFT_07g005220 [Sorghum bicolor]
Length = 353
Score = 36.6 bits (83), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 58 SNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQII 117
S + +G+ GV ++ ++H HWK+ E V++ C + + +GG ++I
Sbjct: 163 SRQINLGKGGVTHNMLDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKTGG---KVI 219
Query: 118 --GDDTVIFYRGKNY 130
+ +I YRG+NY
Sbjct: 220 YRSINIIILYRGRNY 234
>gi|2980765|emb|CAA18192.1| hypothetical protein [Arabidopsis thaliana]
gi|7270003|emb|CAB79819.1| hypothetical protein [Arabidopsis thaliana]
Length = 392
Score = 36.6 bits (83), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 12/104 (11%)
Query: 31 KVQGPVVKPHELTGEERFYFKKMAQ--KRSNYVPIGRRGVFGGVILNMHMHWKKHETVKV 88
K+QG LT ER + ++ Q K V +GR G+ ++ +++ HWK E V+V
Sbjct: 153 KIQGA-----SLTEAERKFLVELCQRNKTKRQVNLGRDGLTHNMLNDVYNHWKHAEAVRV 207
Query: 89 FCKPSKPGQIHEFAEEIARLSGGIPIQIIG--DDTVIFYRGKNY 130
C + + + G Q++ T++ YRG+NY
Sbjct: 208 KCLGVPTLDMKNVIFHLEDKTFG---QVVSKHSGTLVLYRGRNY 248
>gi|297802930|ref|XP_002869349.1| DNA binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297315185|gb|EFH45608.1| DNA binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 408
Score = 36.6 bits (83), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 12/104 (11%)
Query: 31 KVQGPVVKPHELTGEERFYFKKMAQ--KRSNYVPIGRRGVFGGVILNMHMHWKKHETVKV 88
K+QG LT ER + ++ Q K V +GR G+ ++ +++ HWK E V+V
Sbjct: 154 KIQGA-----SLTEAERKFLVELCQRNKTKRQVNLGRDGLTHNMLNDIYNHWKHAEAVRV 208
Query: 89 FCKPSKPGQIHEFAEEIARLSGGIPIQIIGD--DTVIFYRGKNY 130
C + + + G Q++ T++ YRG+NY
Sbjct: 209 KCLGVPTLDMKNVIFHLEDKTFG---QVVSKHCGTLVLYRGRNY 249
>gi|384123834|ref|YP_005506454.1| hypothetical protein YPD4_3247 [Yersinia pestis D106004]
gi|262363430|gb|ACY60151.1| hypothetical protein YPD4_3247 [Yersinia pestis D106004]
Length = 129
Score = 36.2 bits (82), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 40/87 (45%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
L +++ + K +A V +G G+ GV+ + HE +KV +
Sbjct: 3 LNNKQKQHLKSLAHPLKPVVMLGNNGLTEGVLAEIEQTLAHHELIKVKITAEERETKALI 62
Query: 102 AEEIARLSGGIPIQIIGDDTVIFYRGK 128
A+ I R +G + +Q+IG+ V++ K
Sbjct: 63 ADAIVRETGAVNVQMIGNILVLYRPAK 89
>gi|356496030|ref|XP_003516873.1| PREDICTED: CRS2-associated factor 2, mitochondrial-like [Glycine
max]
Length = 358
Score = 36.2 bits (82), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 19/125 (15%)
Query: 46 ERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEI 105
ER+ A++ + +G+ GV ++ ++H HWKK E V++ C + +
Sbjct: 152 ERYRHSDCARQ----INLGKGGVTHNMLGDIHNHWKKAEAVRIKCLGVPTLDMDNVCFHL 207
Query: 106 ARLSGGIPIQII--GDDTVIFYRGKNY------VQPEIM----SPIDTLSKKKALEKSKY 153
SGG ++I + ++ YRG+NY V P ++ +PI K +E Y
Sbjct: 208 EDKSGG---KVIYRNINILLLYRGRNYDTKNCPVIPLMLWKPYAPIYPRLVKNVIEGLTY 264
Query: 154 EQSLE 158
E++ E
Sbjct: 265 EETKE 269
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.135 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,407,778,908
Number of Sequences: 23463169
Number of extensions: 134948766
Number of successful extensions: 360711
Number of sequences better than 100.0: 353
Number of HSP's better than 100.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 114
Number of HSP's that attempted gapping in prelim test: 360045
Number of HSP's gapped (non-prelim): 564
length of query: 223
length of database: 8,064,228,071
effective HSP length: 137
effective length of query: 86
effective length of database: 9,144,741,214
effective search space: 786447744404
effective search space used: 786447744404
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 74 (33.1 bits)