BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036518
(223 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q67XL4|Y3544_ARATH Uncharacterized CRM domain-containing protein At3g25440,
chloroplastic OS=Arabidopsis thaliana GN=At3g25440 PE=2
SV=1
Length = 444
Score = 162 bits (409), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 86/187 (45%), Positives = 117/187 (62%), Gaps = 2/187 (1%)
Query: 2 AEALLFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYV 61
+E + + LRKA + L +K+ E + P LT EE FY+ KM K NYV
Sbjct: 137 SEEKILNKLRKARKKEERLMETMKKLEPSESAETTHDPEILTPEEHFYYLKMGLKCKNYV 196
Query: 62 PIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDT 121
P+GRRG++ GVILNMH+HWKKH+T++V K P ++ E A E+ARL+GGI + + +T
Sbjct: 197 PVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVELARLTGGIVLDVHEGNT 256
Query: 122 VIFYRGKNYVQP--EIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKELELYYRHIA 179
+I YRGKNYVQP EIMSP TL +KKAL+KSK +L +VR++I E+EL+L
Sbjct: 257 IIMYRGKNYVQPPTEIMSPRITLPRKKALDKSKCRDALRAVRKYIPRLEQELQLLQAQAE 316
Query: 180 LYGDPNN 186
D N
Sbjct: 317 TKRDYTN 323
>sp|Q6YYA3|CRS1_ORYSJ Chloroplastic group IIA intron splicing facilitator CRS1,
chloroplastic OS=Oryza sativa subsp. japonica
GN=Os08g0360100 PE=2 SV=1
Length = 725
Score = 86.7 bits (213), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 77/140 (55%), Gaps = 3/140 (2%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
LT EER F+K+ K +V +GRRGVF GVI +H HWK E VKV K ++ QI
Sbjct: 566 LTEEERRIFRKIGLKMDEHVLLGRRGVFEGVIEEIHQHWKHKEVVKVITKQNQASQITYT 625
Query: 102 AEEIARLSGGIPIQI---IGDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLE 158
+ + +GG I I +I YRGKNY +P +P + L+K++AL++S Q
Sbjct: 626 SMMLEVETGGTLIAIERFTTSHAIILYRGKNYRRPTKSAPSNLLTKREALQRSIEVQRRG 685
Query: 159 SVRRFIAMAEKELELYYRHI 178
S++ F +K ++ R +
Sbjct: 686 SMKYFAQERKKSIDELKREL 705
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
Query: 35 PVVKPHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSK 94
P V+P L EE Y +K A+ + +GR G+ + W+K KV K
Sbjct: 348 PGVRP-ALADEELTYLRKHARPLPTHFVLGRNTKLQGLAAAILKLWEKSLIAKVAVKVGI 406
Query: 95 PGQIHE-FAEEIARLSGGIPIQIIGDDTVIFYRGKNYV 131
HE A + RL+GG I + D +I YRGK+++
Sbjct: 407 QNTNHEQMARNLKRLTGGTVI-LRNKDYIIIYRGKDFL 443
>sp|Q9FYT6|CRS1_MAIZE Chloroplastic group IIA intron splicing facilitator CRS1,
chloroplastic OS=Zea mays GN=CRS1 PE=1 SV=1
Length = 715
Score = 84.3 bits (207), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 75/133 (56%), Gaps = 3/133 (2%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
LT EE+ F+++ +K V +GRRG+F GVI +H HWK E VKV K ++ QI
Sbjct: 564 LTEEEKIMFRRIGRKMDGLVLLGRRGIFDGVIEEIHQHWKHKEVVKVITKQNQTRQIMYA 623
Query: 102 AEEIARLSGGIPI---QIIGDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLE 158
A + +GGI I ++ +I YRGKNY +P S + L+K++AL +S Q
Sbjct: 624 ASLLEVETGGILIAVEKLTTSHAIILYRGKNYRRPAKSSFSNLLTKREALRRSIEVQRRG 683
Query: 159 SVRRFIAMAEKEL 171
S++ F+ +K +
Sbjct: 684 SMKYFVRERQKSI 696
Score = 37.7 bits (86), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
Query: 35 PVVKPHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSK 94
P V+P L EE Y +K+A+ + +GR G+ + W+K K+ K
Sbjct: 346 PGVRP-TLADEELTYLRKLARLLPTHFALGRNTRLQGLAAAILKLWEKSLIAKIAVKIGI 404
Query: 95 PGQIHE-FAEEIARLSGGIPIQIIGDDTVIFYRGKNYV 131
+E A + L+GG I + D +I YRGK+++
Sbjct: 405 QNTNNEQMAWNLKHLTGGTVI-LRNKDFIILYRGKDFL 441
>sp|Q9LF10|CRS1_ARATH Chloroplastic group IIA intron splicing facilitator CRS1,
chloroplastic OS=Arabidopsis thaliana GN=At5g16180 PE=2
SV=2
Length = 720
Score = 71.6 bits (174), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 75/136 (55%), Gaps = 6/136 (4%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
LT EER +++ K ++ + +GRRGVF GV+ +H HWK E KV ++
Sbjct: 572 LTNEERECLRRIGLKMNSSLVLGRRGVFFGVMEGLHQHWKHREVAKVITMQKLFSRVVYT 631
Query: 102 AEEIARLSGGIPIQIIG---DDTVIFYRGKNYVQP--EIMSPIDTLSKKKALEKSKYEQS 156
A+ + S G+ I I ++ YRGKNY +P ++M+ + L+K+KAL++S Q
Sbjct: 632 AKALETESNGVLISIEKLKEGHAILIYRGKNYKRPSSKLMAQ-NLLTKRKALQRSVVMQR 690
Query: 157 LESVRRFIAMAEKELE 172
L S++ F E+ +E
Sbjct: 691 LGSLKFFAYQRERAIE 706
Score = 43.9 bits (102), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 64/137 (46%), Gaps = 6/137 (4%)
Query: 27 YEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETV 86
Y P + P +LT EE Y + +AQ + +GR G+ + W+K
Sbjct: 346 YMTPSRRCPPNTRAKLTDEELTYLRNIAQPLPFHFVLGRNYGLQGLASAIVKLWEKCIIA 405
Query: 87 KVFCK-PSKPGQIHEFAEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEIMSPIDT---- 141
K+ K + E A+E+ L+GG+ I + ++ YRGK+++ E+ ++
Sbjct: 406 KIAIKWGALNTNNEEMADELRYLTGGVLI-LRNKYLIVLYRGKDFLSDEVADLVEDRERL 464
Query: 142 LSKKKALEKSKYEQSLE 158
LS+ + E++K E +E
Sbjct: 465 LSRYQHFEETKRESDIE 481
>sp|Q5VMQ5|CAF1P_ORYSJ CRS2-associated factor 1, chloroplastic OS=Oryza sativa subsp.
japonica GN=Os01g0495900 PE=2 SV=1
Length = 701
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 3/112 (2%)
Query: 19 FLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHM 78
FL+ RY+ + + +P LT EE K K + IGR G+ ++ N+H
Sbjct: 164 FLAGTEPRYQAASREEVLGEP--LTKEEVDELVKATLKTKRQLNIGRDGLTHNMLENIHS 221
Query: 79 HWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTVIFYRGKNY 130
HWK+ K+ CK + +++ GG I G + +RG+NY
Sbjct: 222 HWKRKRVCKIKCKGVCTVDMDNVCQQLEEKVGGKVIHHQG-GVIFLFRGRNY 272
>sp|Q657G7|CAF2P_ORYSJ CRS2-associated factor 2, chloroplastic OS=Oryza sativa subsp.
japonica GN=Os01g0323300 PE=2 SV=1
Length = 607
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 63 IGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTV 122
IGR G+ ++ +H HW++ E KV C+ + + SGG I +G V
Sbjct: 251 IGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMKNLCYHLEEKSGGKVIHRVG-GVV 309
Query: 123 IFYRGKNY 130
YRG+NY
Sbjct: 310 FLYRGRNY 317
>sp|Q6Z4U2|CAF1M_ORYSJ CRS2-associated factor 1, mitochondrial OS=Oryza sativa subsp.
japonica GN=Os08g0174900 PE=2 SV=1
Length = 428
Score = 43.9 bits (102), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 42 LTGEERFYFKKMAQKRSN--YVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIH 99
LT ER + QK + +GR G+ ++ ++H HWK E V+V C +
Sbjct: 157 LTPAERAFLVSKCQKSRTKKQINLGRDGLTHNMLNDIHNHWKNDEAVRVKCLGVPTVDMQ 216
Query: 100 EFAEEIARLSGGIPIQIIGDDTVIFYRGKNY 130
++ +GG+ I G +I YRG++Y
Sbjct: 217 NVCHQLEDKTGGLIIHRHG-GQLILYRGRHY 246
>sp|Q84N49|CAF1P_MAIZE CRS2-associated factor 1, chloroplastic OS=Zea mays GN=CAF1 PE=1
SV=1
Length = 674
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
LT EE K + K + +GR G+ ++ N+H HWK+ K+ CK +
Sbjct: 185 LTKEEVSELVKGSLKSKRQLNMGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTIDMDNI 244
Query: 102 AEEIARLSGGIPIQIIGDDTVIFYRGKNY 130
++ GG I G + +RG+NY
Sbjct: 245 CHQLEEKVGGKVIHRQG-GVIFLFRGRNY 272
>sp|Q84N48|CAF2P_MAIZE CRS2-associated factor 2, chloroplastic OS=Zea mays GN=CAF2 PE=1
SV=1
Length = 611
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 63 IGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTV 122
IGR G+ ++ +H HW++ E KV C+ + + SGG I +G V
Sbjct: 255 IGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMKNLCYHLEEKSGGKVIHRVG-GVV 313
Query: 123 IFYRGKNY 130
YRG++Y
Sbjct: 314 FLYRGRHY 321
>sp|Q9LDA9|CAF2P_ARATH CRS2-associated factor 2, chloroplastic OS=Arabidopsis thaliana
GN=At1g23400 PE=2 SV=1
Length = 564
Score = 40.0 bits (92), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 19/107 (17%)
Query: 24 LKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKH 83
LKR+E +G ++KPH M R V +GR G ++ +H HWK+
Sbjct: 203 LKRWE----KGMLIKPH------------MHDNRQ--VNLGRDGFTHNMLELIHSHWKRR 244
Query: 84 ETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTVIFYRGKNY 130
KV CK ++ + +GG I +G V +RG+NY
Sbjct: 245 RVCKVRCKGVPTVDMNNVCRVLEEKTGGEIIHRVG-GVVYLFRGRNY 290
>sp|Q9FFU1|CAF2M_ARATH CRS2-associated factor 2, mitochondrial OS=Arabidopsis thaliana
GN=At5g54890 PE=2 SV=1
Length = 358
Score = 38.9 bits (89), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 61 VPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDD 120
+ +G+ GV +I ++H HWKK E V++ C + + SGG I +
Sbjct: 164 INLGKGGVTHNMIDDIHNHWKKAEAVRIKCLGVPTLDMDNICFHLEEKSGG-KIVYRNIN 222
Query: 121 TVIFYRGKNY 130
++ YRG+NY
Sbjct: 223 ILVLYRGRNY 232
>sp|Q8VYD9|CAF1M_ARATH CRS2-associated factor 1, mitochondrial OS=Arabidopsis thaliana
GN=At4g31010 PE=2 SV=1
Length = 405
Score = 37.4 bits (85), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 26/111 (23%)
Query: 31 KVQGPVVKPHELTGEERFYFKKMAQ--KRSNYVPIGRRGVFGGVILNMHMHWKKHETVKV 88
K+QG LT ER + ++ Q K V +GR G+ ++ +++ HWK E V+V
Sbjct: 153 KIQGA-----SLTEAERKFLVELCQRNKTKRQVNLGRDGLTHNMLNDVYNHWKHAEAVRV 207
Query: 89 FC--KPS---KPGQIH----EFAEEIARLSGGIPIQIIGDDTVIFYRGKNY 130
C P+ K H F + +++ SG T++ YRG+NY
Sbjct: 208 KCLGVPTLDMKNVIFHLEDKTFGQVVSKHSG----------TLVLYRGRNY 248
>sp|Q0J7J7|CAF2M_ORYSJ CRS2-associated factor 2, mitochondrial OS=Oryza sativa subsp.
japonica GN=Os08g0188000 PE=2 SV=2
Length = 366
Score = 37.4 bits (85), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 58 SNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQII 117
S + +G+ GV +I ++H HWK+ E V++ C + + +GG ++I
Sbjct: 163 SRQINLGKGGVTHNMIDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKTGG---KVI 219
Query: 118 --GDDTVIFYRGKNY 130
+ +I YRG+NY
Sbjct: 220 YRNINILILYRGRNY 234
>sp|Q9SL79|CAF1P_ARATH CRS2-associated factor 1, chloroplastic OS=Arabidopsis thaliana
GN=At2g20020 PE=1 SV=2
Length = 701
Score = 37.0 bits (84), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
LT EE K + + +GR G+ ++ N+H WK+ K+ CK +
Sbjct: 243 LTKEEVRELVTSCLKTTRQLNMGRDGLTHNMLNNIHDLWKRRRVCKIKCKGVCTVDMDNV 302
Query: 102 AEEIARLSGGIPIQIIGDDTVIFYRGKNY 130
E++ GG I G + +RG+NY
Sbjct: 303 CEQLEEKIGGKVIYRRG-GVLFLFRGRNY 330
>sp|P0AGK7|YHBY_SHIFL RNA-binding protein YhbY OS=Shigella flexneri GN=yhbY PE=4 SV=1
Length = 97
Score = 35.8 bits (81), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
L+ +++ + K +A V +G G+ GV+ + + HE +KV
Sbjct: 3 LSTKQKQHLKGLAHPLKPVVLLGSNGLTEGVLAEIEQALEHHELIKVKIATEDRETKTLI 62
Query: 102 AEEIARLSGGIPIQIIGDDTVIFYR 126
E I R +G +Q+IG T++ YR
Sbjct: 63 VEAIVRETGACNVQVIG-KTLVLYR 86
>sp|P0AGK4|YHBY_ECOLI RNA-binding protein YhbY OS=Escherichia coli (strain K12) GN=yhbY
PE=1 SV=1
Length = 97
Score = 35.8 bits (81), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
L+ +++ + K +A V +G G+ GV+ + + HE +KV
Sbjct: 3 LSTKQKQHLKGLAHPLKPVVLLGSNGLTEGVLAEIEQALEHHELIKVKIATEDRETKTLI 62
Query: 102 AEEIARLSGGIPIQIIGDDTVIFYR 126
E I R +G +Q+IG T++ YR
Sbjct: 63 VEAIVRETGACNVQVIG-KTLVLYR 86
>sp|P0AGK5|YHBY_ECOL6 RNA-binding protein YhbY OS=Escherichia coli O6:H1 (strain CFT073 /
ATCC 700928 / UPEC) GN=yhbY PE=4 SV=1
Length = 97
Score = 35.8 bits (81), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
L+ +++ + K +A V +G G+ GV+ + + HE +KV
Sbjct: 3 LSTKQKQHLKGLAHPLKPVVLLGSNGLTEGVLAEIEQALEHHELIKVKIATEDRETKTLI 62
Query: 102 AEEIARLSGGIPIQIIGDDTVIFYR 126
E I R +G +Q+IG T++ YR
Sbjct: 63 VEAIVRETGACNVQVIG-KTLVLYR 86
>sp|P0AGK6|YHBY_ECO57 RNA-binding protein YhbY OS=Escherichia coli O157:H7 GN=yhbY PE=4
SV=1
Length = 97
Score = 35.8 bits (81), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
L+ +++ + K +A V +G G+ GV+ + + HE +KV
Sbjct: 3 LSTKQKQHLKGLAHPLKPVVLLGSNGLTEGVLAEIEQALEHHELIKVKIATEDRETKTLI 62
Query: 102 AEEIARLSGGIPIQIIGDDTVIFYR 126
E I R +G +Q+IG T++ YR
Sbjct: 63 VEAIVRETGACNVQVIG-KTLVLYR 86
>sp|P0CR70|SPT5_CRYNJ Transcription elongation factor SPT5 OS=Cryptococcus neoformans
var. neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=SPT5 PE=3 SV=1
Length = 1152
Score = 33.5 bits (75), Expect = 1.2, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 84 ETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEIMSPIDTLS 143
+ + VFC+ S PG I F E AR S + + G + RG N V E M+P+ +
Sbjct: 238 DVISVFCRDSIPGMI--FIE--ARQSASVSAAVNGIVGIFMSRGVNLVPIEEMAPLLKMK 293
Query: 144 KK 145
KK
Sbjct: 294 KK 295
>sp|P0CR71|SPT5_CRYNB Transcription elongation factor SPT5 OS=Cryptococcus neoformans
var. neoformans serotype D (strain B-3501A) GN=SPT5 PE=3
SV=1
Length = 1152
Score = 33.5 bits (75), Expect = 1.2, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 84 ETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEIMSPIDTLS 143
+ + VFC+ S PG I F E AR S + + G + RG N V E M+P+ +
Sbjct: 238 DVISVFCRDSIPGMI--FIE--ARQSASVSAAVNGIVGIFMSRGVNLVPIEEMAPLLKMK 293
Query: 144 KK 145
KK
Sbjct: 294 KK 295
>sp|Q07356|PDS_ARATH 15-cis-phytoene desaturase, chloroplastic/chromoplastic
OS=Arabidopsis thaliana GN=PDS PE=1 SV=1
Length = 566
Score = 32.3 bits (72), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 66 RGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
+ +FG + +N + WK+H + F PSKPG+ F
Sbjct: 157 QNLFGELGINDRLQWKEHSMI--FAMPSKPGEFSRF 190
>sp|P28554|CRTI_SOLLC Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Solanum
lycopersicum GN=PDS PE=2 SV=1
Length = 583
Score = 32.0 bits (71), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 66 RGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
+ +FG + +N + WK+H + F PSKPG+ F
Sbjct: 176 QNLFGELGINDRLQWKEHSMI--FAMPSKPGEFSRF 209
>sp|Q7TMB7|LPPR4_RAT Lipid phosphate phosphatase-related protein type 4 OS=Rattus
norvegicus GN=Lppr4 PE=2 SV=1
Length = 766
Score = 31.6 bits (70), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 45/109 (41%), Gaps = 15/109 (13%)
Query: 119 DDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLESVR-----RFIAMAEKELEL 173
+ TV RG N QP IM I ++ L+ S +V R+ + + E
Sbjct: 564 EKTVACNRGNN--QPRIMQVIAMSKQQGVLQSSPKNAEGSTVTCTGSIRYKTLTDHEPSG 621
Query: 174 YYRHIALYGDPNNRNPMSIMDNPSKVTKE---SWKFKMVERKSLDSTYD 219
R + P N P I+ PS E SWK+K E+ SL TY+
Sbjct: 622 IVR---VEAHPENNRP--IIQIPSSTEGEGSGSWKWKAPEKSSLRQTYE 665
>sp|P28553|CRTI_SOYBN Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Glycine max
GN=PDS1 PE=2 SV=1
Length = 570
Score = 30.8 bits (68), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 66 RGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
+ +FG + +N + WK+H +F P+KPG+ F
Sbjct: 163 QNLFGELGINDRLQWKEHSM--IFAMPNKPGEFSRF 196
>sp|P80093|PDS_CAPAN 15-cis-phytoene desaturase, chloroplastic/chromoplastic OS=Capsicum
annuum GN=PDS PE=1 SV=1
Length = 582
Score = 30.8 bits (68), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 66 RGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
+ +FG + +N + WK+H +F P+KPG+ F
Sbjct: 175 QNLFGELGINDRLQWKEHSM--IFAMPNKPGEFSRF 208
>sp|B6YSU8|NIKR_THEON Putative nickel-responsive regulator OS=Thermococcus onnurineus
(strain NA1) GN=TON_0150 PE=3 SV=1
Length = 138
Score = 30.4 bits (67), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 72 VILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSG 110
++ ++H+H +H ++V K G+I E AE + L G
Sbjct: 84 IVSSLHVHMDEHNCLEVVVVKGKAGRIKEIAERLISLKG 122
>sp|Q0DUI8|CRTI_ORYSJ Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Oryza sativa
subsp. japonica GN=PDS PE=2 SV=2
Length = 578
Score = 30.4 bits (67), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 66 RGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
+ +FG + +N + WK+H +F P+KPG+ F
Sbjct: 169 QNLFGELGINDRLQWKEHSM--IFAMPNKPGEFSRF 202
>sp|A2XDA1|CRTI_ORYSI Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Oryza sativa
subsp. indica GN=PDS1 PE=2 SV=2
Length = 578
Score = 30.4 bits (67), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 66 RGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
+ +FG + +N + WK+H +F P+KPG+ F
Sbjct: 169 QNLFGELGINDRLQWKEHSM--IFAMPNKPGEFSRF 202
>sp|Q40406|CRTI_NARPS Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Narcissus
pseudonarcissus GN=PDS1 PE=1 SV=1
Length = 570
Score = 30.4 bits (67), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 66 RGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
+ +FG + +N + WK+H +F P+KPG+ F
Sbjct: 162 QNLFGELGINDRLQWKEHSM--IFAMPNKPGEFSRF 195
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,072,851
Number of Sequences: 539616
Number of extensions: 3332300
Number of successful extensions: 10476
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 10441
Number of HSP's gapped (non-prelim): 39
length of query: 223
length of database: 191,569,459
effective HSP length: 113
effective length of query: 110
effective length of database: 130,592,851
effective search space: 14365213610
effective search space used: 14365213610
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)