Query 036518
Match_columns 223
No_of_seqs 169 out of 822
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 04:00:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036518.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036518hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1rq8_A Conserved hypothetical 100.0 3.8E-31 1.3E-35 207.4 13.8 97 41-139 1-97 (104)
2 1jo0_A Hypothetical protein HI 100.0 1.5E-30 5.2E-35 201.8 13.7 96 41-139 2-97 (98)
3 2h9u_A DNA/RNA-binding protein 50.6 48 0.0016 25.1 6.6 60 58-117 6-67 (102)
4 1nbw_B Glycerol dehydratase re 46.3 1E+02 0.0035 24.0 8.9 82 57-140 4-89 (117)
5 2d0o_B DIOL dehydratase-reacti 41.2 48 0.0017 26.1 5.5 79 57-136 6-85 (125)
6 1uii_A Geminin; human, DNA rep 38.1 78 0.0027 23.6 5.8 33 144-176 37-74 (83)
7 2bky_A DNA/RNA-binding protein 37.7 1E+02 0.0034 23.0 6.5 59 58-116 9-69 (97)
8 1nfj_A ALBA, conserved hypothe 35.2 1.2E+02 0.0041 22.2 6.5 57 59-116 4-62 (89)
9 1nh9_A MJA10B, DNA-binding pro 33.2 1.4E+02 0.0048 21.7 6.9 58 57-115 1-59 (87)
10 2pnv_A Small conductance calci 31.3 66 0.0023 21.1 4.0 26 155-180 16-41 (43)
11 3sbx_A Putative uncharacterize 30.1 54 0.0018 27.2 4.3 36 50-86 131-166 (189)
12 1pyi_A Protein (pyrimidine pat 30.0 1.1E+02 0.0039 21.3 5.6 21 163-183 49-69 (96)
13 1srv_A Protein (groel (HSP60 c 29.5 1.6E+02 0.0054 23.8 6.8 67 48-116 44-112 (145)
14 3n70_A Transport activator; si 28.4 1.7E+02 0.0059 21.5 6.6 47 47-94 14-63 (145)
15 3r45_C Holliday junction recog 25.2 46 0.0016 24.6 2.6 42 2-43 15-57 (81)
16 3shg_B VBHA; ampylation, adeny 23.2 49 0.0017 23.4 2.4 29 141-169 7-38 (61)
17 3vmx_A Voltage-gated hydrogen 22.3 1.8E+02 0.0063 19.5 5.4 29 154-182 17-45 (48)
18 2wvr_A Geminin; DNA replicatio 21.9 1.6E+02 0.0055 25.3 5.7 33 144-176 106-143 (209)
19 3qua_A Putative uncharacterize 21.7 76 0.0026 26.5 3.7 36 50-86 140-175 (199)
20 2dk5_A DNA-directed RNA polyme 20.6 1.6E+02 0.0054 21.3 4.9 59 33-91 9-72 (91)
No 1
>1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1
Probab=99.97 E-value=3.8e-31 Score=207.44 Aligned_cols=97 Identities=24% Similarity=0.423 Sum_probs=90.8
Q ss_pred CCCHHHHHHHHHHhhcCCCeeeeCCCCCCHHHHHHHHHHHHhCCeeEEEecCCChhhHHHHHHHHHHHhCCeeEEEECCe
Q 036518 41 ELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDD 120 (223)
Q Consensus 41 ~LT~kERk~LRk~Ah~LKpvV~IGK~GVTdgVIeeI~~~Lk~hELVKVkv~~~~~~d~keiAeeLa~~sGg~LVqvIG~~ 120 (223)
|||++||++||++||+|+|+|+|||+|||++|+++|+++|++||||||+|.+++.++++++|++||+.|||++||+||+
T Consensus 1 mLt~kqr~~LR~~ah~Lkpvv~IGK~GlTe~vi~ei~~aL~~hELIKVkvl~~~~~d~~e~a~~la~~t~a~vVq~IG~- 79 (104)
T 1rq8_A 1 MLTGKQKRYLRSLAHNIDPIFQIGKGGINENMIKQIDDTLENRELIKVHVLQNNFDDKKELAETLSEATRSELVQVIGS- 79 (104)
T ss_dssp CCCHHHHHHHHHHTTSSCCSCEECSSSCCHHHHHHHHHHHHHSSEEEEEECCCCHHHHHHHHHHHHHHHTEEEEEEETT-
T ss_pred CCCHHHHHHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHHHHHHhCCEEEEEECC-
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCCCCCCCc
Q 036518 121 TVIFYRGKNYVQPEIMSPI 139 (223)
Q Consensus 121 aII~YRgKny~~P~~l~P~ 139 (223)
++++||++. ..|.+..|-
T Consensus 80 ~~VLYR~~~-~~~~i~~~~ 97 (104)
T 1rq8_A 80 MIVIYRESK-ENKEIELPL 97 (104)
T ss_dssp EEEEEECCC-SCCSCCCC-
T ss_pred EEEEEeCCC-CCCceeccc
Confidence 556799875 677777773
No 2
>1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A
Probab=99.97 E-value=1.5e-30 Score=201.80 Aligned_cols=96 Identities=22% Similarity=0.367 Sum_probs=89.3
Q ss_pred CCCHHHHHHHHHHhhcCCCeeeeCCCCCCHHHHHHHHHHHHhCCeeEEEecCCChhhHHHHHHHHHHHhCCeeEEEECCe
Q 036518 41 ELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDD 120 (223)
Q Consensus 41 ~LT~kERk~LRk~Ah~LKpvV~IGK~GVTdgVIeeI~~~Lk~hELVKVkv~~~~~~d~keiAeeLa~~sGg~LVqvIG~~ 120 (223)
.||++||++||++||+|+|+|+||++|||++|+++|+++|++||||||+|.+++.++++++|++||+.|||++||+||+
T Consensus 2 ~Lt~kqr~~Lr~~ah~l~pvv~IGk~GlT~~vi~ei~~aL~~~ELIKVkvl~~~~~~~~e~a~~la~~t~a~~Vq~IG~- 80 (98)
T 1jo0_A 2 TLSTKQKQFLKGLAHHLNPVVMLGGNGLTEGVLAEIENALNHHELIKVKVAGADRETKQLIINAIVRETKAAQVQTIGH- 80 (98)
T ss_dssp CCCHHHHHHHHHHHTTBCCSEEECTTCSCHHHHHHHHHHHHHHSEEEEEETTCCHHHHHHHHHHHHHHHCCEEEEEETT-
T ss_pred CCCHHHHHHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHHCCeEEEEEeCCCHHHHHHHHHHHHHHhCCEEEEEECC-
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCCCCCCCc
Q 036518 121 TVIFYRGKNYVQPEIMSPI 139 (223)
Q Consensus 121 aII~YRgKny~~P~~l~P~ 139 (223)
++++||+. ..|.+..|.
T Consensus 81 ~~vLyR~~--~~~~i~lp~ 97 (98)
T 1jo0_A 81 ILVLYRPS--EEAKIQLPR 97 (98)
T ss_dssp EEEEECCC--SSCCBCCCC
T ss_pred EEEEEccC--CCCCcCCCC
Confidence 55679986 336666664
No 3
>2h9u_A DNA/RNA-binding protein ALBA 2; archaea, DNA binding protein, structural G NPPSFA, national project on protein structural and function analyses; 2.00A {Aeropyrum pernix} PDB: 3u6y_A*
Probab=50.59 E-value=48 Score=25.13 Aligned_cols=60 Identities=20% Similarity=0.185 Sum_probs=48.9
Q ss_pred CCeeeeCCCCCCHHHHHHHHHHHHh-CCeeEEEecCCChhhHHHHHHHHHHHh-CCeeEEEE
Q 036518 58 SNYVPIGRRGVFGGVILNMHMHWKK-HETVKVFCKPSKPGQIHEFAEEIARLS-GGIPIQII 117 (223)
Q Consensus 58 KpvV~IGK~GVTdgVIeeI~~~Lk~-hELVKVkv~~~~~~d~keiAeeLa~~s-Gg~LVqvI 117 (223)
...|.||+.|++..|...+...|.. ..=|.|+-.+.+-...=.+|+.|.+.. +|.-|+.+
T Consensus 6 ~n~I~V~~k~~~nyV~~a~~~ll~~g~~eV~ikA~G~AIskAV~vaEilk~r~~~gl~~q~i 67 (102)
T 2h9u_A 6 APEVRIGRKPVMNYVLAILTTLMEQGTNQVVVKARGRNINRAVDAVEIVRKRFAKNIEIKDI 67 (102)
T ss_dssp CCEEECCSSCHHHHHHHHHHHHTSTTCCEEEEEEETTHHHHHHHHHHHHHHHTTTTEEEEEE
T ss_pred CCEEEEcCCCHHHHHHHHHHHHHhCCCCEEEEEEechhhhHHHHHHHHHHHhccCCceEEEE
Confidence 4789999999998888888566754 678888988888778888999999998 67555654
No 4
>1nbw_B Glycerol dehydratase reactivase beta subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.51.3.2
Probab=46.35 E-value=1e+02 Score=23.96 Aligned_cols=82 Identities=13% Similarity=-0.006 Sum_probs=56.4
Q ss_pred CCCeeeeCC--CCCCHHHHHHHHHHHHhCCeeEEEecCCChhhHHHHHHHHHHHhCCee-EEEECC-eEEEEecCCCCCC
Q 036518 57 RSNYVPIGR--RGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIP-IQIIGD-DTVIFYRGKNYVQ 132 (223)
Q Consensus 57 LKpvV~IGK--~GVTdgVIeeI~~~Lk~hELVKVkv~~~~~~d~keiAeeLa~~sGg~L-VqvIG~-~aII~YRgKny~~ 132 (223)
-+|.+.|.- ++....++.+|-.-++..++-=.........|+..+|..-+..|+.-| |.+... +++|-||.-...+
T Consensus 4 ~~PaI~i~~~~~~~~~~~l~~vl~GIEEEGip~~v~~~~~~~d~~~lA~~AA~~S~lgVGIGi~~~G~~vih~~~L~~~~ 83 (117)
T 1nbw_B 4 SPPGVRLFYDPRGHHAGAINELCWGLEEQGVPCQTITYDGGGDAAALGALAARSSPLRVGIGLSASGEIALTHAQLPADA 83 (117)
T ss_dssp -CCCEEEEECTTSCCHHHHHHHHHHHHHTTCCEEEEECTTCCCHHHHHHHHHHHCTTSEEEEECTTSEEEEEETTSCTTC
T ss_pred CCCEEEEEeCCCCCCHHHHHHHHhhhhhcCCCeEEEEeCCCCCHHHHHHHHHHhCCCceEEEECCCCCEEEEcCCCCCCC
Confidence 367777776 666789999999999988864333332223789999999999887433 555544 6888898766566
Q ss_pred CCCCCCcc
Q 036518 133 PEIMSPID 140 (223)
Q Consensus 133 P~~l~P~~ 140 (223)
|. ++..
T Consensus 84 pL--f~~~ 89 (117)
T 1nbw_B 84 PL--ATGH 89 (117)
T ss_dssp CS--EEEE
T ss_pred Cc--ccCC
Confidence 63 5444
No 5
>2d0o_B DIOL dehydratase-reactivating factor small subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.51.3.2 PDB: 2d0p_B
Probab=41.24 E-value=48 Score=26.15 Aligned_cols=79 Identities=14% Similarity=0.069 Sum_probs=55.4
Q ss_pred CCCeeeeCCCCCCHHHHHHHHHHHHhCCeeEEEecCCChhhHHHHHHHHHHHhCC-eeEEEECCeEEEEecCCCCCCCCC
Q 036518 57 RSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGG-IPIQIIGDDTVIFYRGKNYVQPEI 135 (223)
Q Consensus 57 LKpvV~IGK~GVTdgVIeeI~~~Lk~hELVKVkv~~~~~~d~keiAeeLa~~sGg-~LVqvIG~~aII~YRgKny~~P~~ 135 (223)
-+|.+.|.-.+-.++++.+|-.-++..++-=. +......|+..+|..-+..|+. +=|.+.+++++|-||.-...+|..
T Consensus 6 ~kPaI~i~~~~~~~~~l~evl~GIEEEGip~~-v~~~~~~d~~~lA~~AA~~S~LgVGIGi~~~~~vih~k~L~~~~pL~ 84 (125)
T 2d0o_B 6 SAPAIAIAVIDGCDGLWREVLLGIEEEGIPFR-LQHHPAGEVVDSAWQAARSSPLLVGIACDRHMLVVHYKNLPASAPLF 84 (125)
T ss_dssp CCCCEEEEEETTCGGGGHHHHHHHHHTTCCEE-EEEESSCCHHHHHHHHHHTCTTSEEEEECSSEEEEEETTSCTTCCSE
T ss_pred CCCEEEEEeCCCcHHHHHHHHhhhcccCCCeE-EEecCCCCHHHHHHHHHHhCCCceeEEECCCcEEEEcCCCCCCCChh
Confidence 36777776666667888888888888776322 3333347889999999998874 346666778889898766666654
Q ss_pred C
Q 036518 136 M 136 (223)
Q Consensus 136 l 136 (223)
.
T Consensus 85 ~ 85 (125)
T 2d0o_B 85 T 85 (125)
T ss_dssp E
T ss_pred h
Confidence 3
No 6
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=38.05 E-value=78 Score=23.56 Aligned_cols=33 Identities=27% Similarity=0.222 Sum_probs=24.2
Q ss_pred HHHHHHHhHHH-----HHHHHHHHHHHHHHHHHHHHHH
Q 036518 144 KKKALEKSKYE-----QSLESVRRFIAMAEKELELYYR 176 (223)
Q Consensus 144 KrkAl~rs~~~-----q~~~~l~~~i~~~e~~~~~~~~ 176 (223)
+|+||..+++. ++++++..-|..+.++.++++.
T Consensus 37 RR~AL~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 37 RRKALYEALKENEKLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999884 5566677777777776666654
No 7
>2bky_A DNA/RNA-binding protein ALBA 1; archaeal DNA binding protein, DNA condensation, DNA-binding, DNA binding protein; 1.70A {Sulfolobus solfataricus} SCOP: d.68.6.1 PDB: 1h0x_A* 1h0y_A* 1y9x_A
Probab=37.74 E-value=1e+02 Score=23.05 Aligned_cols=59 Identities=15% Similarity=0.077 Sum_probs=44.7
Q ss_pred CCeeeeCCCCCCHHHHHHHHHHHHhCCeeEEEecCCChhhHHHHHHHHHHHhCCe-e-EEE
Q 036518 58 SNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGI-P-IQI 116 (223)
Q Consensus 58 KpvV~IGK~GVTdgVIeeI~~~Lk~hELVKVkv~~~~~~d~keiAeeLa~~sGg~-L-Vqv 116 (223)
...|.||+.|+..-|...+.+-=+...=|.|+-.+.+-...=.+|+.|.+...+. + ++-
T Consensus 9 ~n~I~V~~k~v~~YV~~a~~ll~~g~~eV~ikA~G~AIskAV~vaeilk~r~~~~~l~~~~ 69 (97)
T 2bky_A 9 SNVVLIGKKPVMNYVLAALTLLNQGVSEIVIKARGRAISKAVDTVEIVRNRFLPDKIEIKE 69 (97)
T ss_dssp CCEEECCSSCHHHHHHHHHHHHHTTCCEEEEEEETTHHHHHHHHHHHHHHHTSTTTEEEEE
T ss_pred CCEEEEcCcCHHHHHHHHHHHHhCCCCEEEEEEechHHHHHHHHHHHHHHhccCCceEEEE
Confidence 4789999999876666666543344788999999988777888999999988553 4 454
No 8
>1nfj_A ALBA, conserved hypothetical protein AF1956; SIR2, HDAC, gene regulation, transcription; 2.00A {Archaeoglobus fulgidus} SCOP: d.68.6.1 PDB: 1nfh_A 2z7c_A*
Probab=35.21 E-value=1.2e+02 Score=22.18 Aligned_cols=57 Identities=14% Similarity=0.208 Sum_probs=44.9
Q ss_pred CeeeeCCCCCCHHHHHHHHHHHHh-CCeeEEEecCCChhhHHHHHHHHHHHh-CCeeEEE
Q 036518 59 NYVPIGRRGVFGGVILNMHMHWKK-HETVKVFCKPSKPGQIHEFAEEIARLS-GGIPIQI 116 (223)
Q Consensus 59 pvV~IGK~GVTdgVIeeI~~~Lk~-hELVKVkv~~~~~~d~keiAeeLa~~s-Gg~LVqv 116 (223)
..+.||+.|++.-|...+.+ |.. +.=|.|+-.+.+-...=.+|+.|.+.. .|.-|+-
T Consensus 4 n~I~V~~k~v~~yV~~~~~~-l~~g~~eV~ika~G~AIskAV~vaeilk~r~~~gl~i~~ 62 (89)
T 1nfj_A 4 HVVYVGNKPVMNYVLATLTQ-LNEGADEVVIKARGRAISRAVDVAEIVRNRFMPGVKVKE 62 (89)
T ss_dssp EEEECCSSCHHHHHHHHHHH-HHTTCSEEEEEEETTHHHHHHHHHHHHHHHTCTTCEEEE
T ss_pred CEEEEcCCCHHHHHHHHHHH-HhCCCCEEEEEEecHHHHHHHHHHHHHHHhccCCcEEEE
Confidence 57899999998777777765 544 788999999988778888999999988 5544343
No 9
>1nh9_A MJA10B, DNA-binding protein ALBA; 2.00A {Methanocaldococcus jannaschii} SCOP: d.68.6.1
Probab=33.20 E-value=1.4e+02 Score=21.74 Aligned_cols=58 Identities=21% Similarity=0.224 Sum_probs=45.6
Q ss_pred CCCeeeeCCCCCCHHHHHHHHHHHHhCCeeEEEecCCChhhHHHHHHHHHHHh-CCeeEE
Q 036518 57 RSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLS-GGIPIQ 115 (223)
Q Consensus 57 LKpvV~IGK~GVTdgVIeeI~~~Lk~hELVKVkv~~~~~~d~keiAeeLa~~s-Gg~LVq 115 (223)
|...+.||+..+..-|...+.+ |....=|.|+-.+.+-...=.+|+.|.+.. ++.-|+
T Consensus 1 ~~n~I~V~~k~v~~YV~~~~~~-l~~g~eV~ikA~G~AIskAV~vaeilk~r~~~~l~v~ 59 (87)
T 1nh9_A 1 MDNVVLIGKKPVMNYVVAVLTQ-LTSNDEVIIKARGKAINKAVDVAEMIRNRFIKDIKIK 59 (87)
T ss_dssp CCSEEEECSSCHHHHHHHHHHH-HHHCSEEEEEEEGGGHHHHHHHHHHHHHHTCTTCEEE
T ss_pred CCCEEEEeCcchHHHHHHHHHH-hcCCCEEEEEEechHHHHHHHHHHHHHHhccCCeEEE
Confidence 5678999999888888777764 445588889988888778888999999988 544434
No 10
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=31.29 E-value=66 Score=21.06 Aligned_cols=26 Identities=23% Similarity=0.221 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 036518 155 QSLESVRRFIAMAEKELELYYRHIAL 180 (223)
Q Consensus 155 q~~~~l~~~i~~~e~~~~~~~~~~~~ 180 (223)
-|.+.|...|..||..++.+.+.+..
T Consensus 16 ~r~e~LE~Ri~~LE~KLd~L~~~l~a 41 (43)
T 2pnv_A 16 ERSEDFEKRIVTLETKLETLIGSIHA 41 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 36789999999999999999988754
No 11
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=30.07 E-value=54 Score=27.16 Aligned_cols=36 Identities=14% Similarity=0.127 Sum_probs=27.7
Q ss_pred HHHHhhcCCCeeeeCCCCCCHHHHHHHHHHHHhCCee
Q 036518 50 FKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETV 86 (223)
Q Consensus 50 LRk~Ah~LKpvV~IGK~GVTdgVIeeI~~~Lk~hELV 86 (223)
+..++.+-+|++.+|.+|.++++++-++ ++-....|
T Consensus 131 ~~qlg~~~kPvvlln~~gfw~~l~~~l~-~~~~~Gfi 166 (189)
T 3sbx_A 131 EGYLGMHDKSIVVLDPWGHFDGLRAWLS-ELADTGYV 166 (189)
T ss_dssp HHHTTSCCCCEEEECTTCTTHHHHHHHH-HHHHTTSS
T ss_pred HHHhcccCCCEEEecCCccchHHHHHHH-HHHHCCCC
Confidence 4566667799999999999999998886 55555443
No 12
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=30.01 E-value=1.1e+02 Score=21.31 Aligned_cols=21 Identities=24% Similarity=0.477 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHhhhcCC
Q 036518 163 FIAMAEKELELYYRHIALYGD 183 (223)
Q Consensus 163 ~i~~~e~~~~~~~~~~~~~~~ 183 (223)
++..||..|..|...+...+.
T Consensus 49 ~~~~Le~rl~~le~~l~~~~~ 69 (96)
T 1pyi_A 49 YVFFLEDRLAVMMRVLKEYGV 69 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHhCC
Confidence 344555555555555554444
No 13
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1
Probab=29.48 E-value=1.6e+02 Score=23.84 Aligned_cols=67 Identities=21% Similarity=0.211 Sum_probs=45.7
Q ss_pred HHHHHHhhcCCCeeeeCCCCCCHHHHHHHHHHHHhCCeeEEEecCC--ChhhHHHHHHHHHHHhCCeeEEE
Q 036518 48 FYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPS--KPGQIHEFAEEIARLSGGIPIQI 116 (223)
Q Consensus 48 k~LRk~Ah~LKpvV~IGK~GVTdgVIeeI~~~Lk~hELVKVkv~~~--~~~d~keiAeeLa~~sGg~LVqv 116 (223)
-.|-+.++.-+|.+.|. ..|....+..+- .-+-+..++|..-.. -.+.++++-+.||-.|||.+|+-
T Consensus 44 P~LE~v~~~~~pLlIIA-edvegeaLatLv-vNklrg~l~v~AVKAPgfGd~Rk~~L~DiAilTGg~vise 112 (145)
T 1srv_A 44 PILEQVAQTGKPLLIIA-EDVEGEALATLV-VNKLRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGGTVISE 112 (145)
T ss_dssp HHHHHHHTTTCCEEEEE-SEECHHHHHHHH-HHHHTTSCCEEEEECCSSHHHHHHHHHHHHHHHTCCEECT
T ss_pred HHHHHHHHHCCCEEEEe-cccchhhhhhhh-hhhhcccceEEEEeCCCcchhhHHHHHHHHHHhCCEEEcc
Confidence 45667777888977775 455555555433 234466666654332 26888999999999999999853
No 14
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=28.45 E-value=1.7e+02 Score=21.50 Aligned_cols=47 Identities=13% Similarity=-0.004 Sum_probs=33.3
Q ss_pred HHHHHHHhhcCCCeeeeCCCCCCHHHHH-HHHHHHH--hCCeeEEEecCCC
Q 036518 47 RFYFKKMAQKRSNYVPIGRRGVFGGVIL-NMHMHWK--KHETVKVFCKPSK 94 (223)
Q Consensus 47 Rk~LRk~Ah~LKpvV~IGK~GVTdgVIe-eI~~~Lk--~hELVKVkv~~~~ 94 (223)
+..++..+..-.|++..|-.|.--..+. .||.... ...+| |.|....
T Consensus 14 ~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~ 63 (145)
T 3n70_A 14 RRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPD 63 (145)
T ss_dssp HHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTT
T ss_pred HHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCC
Confidence 3455566778889999999999888765 4554432 45678 8887643
No 15
>3r45_C Holliday junction recognition protein; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=25.18 E-value=46 Score=24.59 Aligned_cols=42 Identities=26% Similarity=0.359 Sum_probs=32.8
Q ss_pred hHHhHHHHHHHHHHHHHHHHHH-hccCCCCCCCCCCCCCCCCC
Q 036518 2 AEALLFHNLRKASALNKFLSLR-LKRYEVPKVQGPVVKPHELT 43 (223)
Q Consensus 2 ~~~~~~~~~~~a~~k~~~l~~~-L~~~e~~~~~~p~~dpe~LT 43 (223)
.|.++..||...+......+.+ +++|..|....|-..-++||
T Consensus 15 ~d~~Ll~kLr~sr~RFQ~~Mq~lieKYn~PFeD~plV~M~TLT 57 (81)
T 3r45_C 15 EDDQLLQKLRASRRRFQRRMQRLIEKYNQPFEDTPVVQMATLT 57 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHCSCCTTSCEEBTTTTE
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCceeeeeeee
Confidence 4678899999888888777776 79999998777766655665
No 16
>3shg_B VBHA; ampylation, adenylylation, toxin-antitoxin complex, FIC fold transfer, transferase-protein binding complex; HET: TLA; 1.50A {Bartonella schoenbuchensis R1}
Probab=23.24 E-value=49 Score=23.38 Aligned_cols=29 Identities=17% Similarity=0.276 Sum_probs=23.8
Q ss_pred cccHHHHHHHhHHHHHHHHHH---HHHHHHHH
Q 036518 141 TLSKKKALEKSKYEQSLESVR---RFIAMAEK 169 (223)
Q Consensus 141 lL~KrkAl~rs~~~q~~~~l~---~~i~~~e~ 169 (223)
-+++|+|.+.++.-||++-|. +++.+.|.
T Consensus 7 ~~~Rr~avq~Aian~RLEGLEpd~~~l~~~er 38 (61)
T 3shg_B 7 IEYRRRDARNALASQRLEGLEPDPQVVAQMER 38 (61)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhccCCCCHHHHHHHHH
Confidence 467999999999999998874 67777665
No 17
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=22.29 E-value=1.8e+02 Score=19.50 Aligned_cols=29 Identities=14% Similarity=0.192 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 036518 154 EQSLESVRRFIAMAEKELELYYRHIALYG 182 (223)
Q Consensus 154 ~q~~~~l~~~i~~~e~~~~~~~~~~~~~~ 182 (223)
.++..+|.+--.+.|+||+-+++.+.-++
T Consensus 17 ~~kv~~Le~~c~~~eQEieRL~~LLkqHg 45 (48)
T 3vmx_A 17 ATKIQHLEFSCSEKEQEIERLNKLLKQNG 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHHHcC
Confidence 78889999999999999999998876554
No 18
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=21.87 E-value=1.6e+02 Score=25.29 Aligned_cols=33 Identities=27% Similarity=0.222 Sum_probs=25.6
Q ss_pred HHHHHHHhHHH-----HHHHHHHHHHHHHHHHHHHHHH
Q 036518 144 KKKALEKSKYE-----QSLESVRRFIAMAEKELELYYR 176 (223)
Q Consensus 144 KrkAl~rs~~~-----q~~~~l~~~i~~~e~~~~~~~~ 176 (223)
+|+||.-++++ ++++.+..-|..|.++.+.++.
T Consensus 106 RR~AL~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLke 143 (209)
T 2wvr_A 106 RRKALYEALKENEKLHKEIEQKDNEIARLKKENKELAE 143 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999984 5667777788888777766654
No 19
>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str}
Probab=21.69 E-value=76 Score=26.46 Aligned_cols=36 Identities=8% Similarity=0.108 Sum_probs=27.9
Q ss_pred HHHHhhcCCCeeeeCCCCCCHHHHHHHHHHHHhCCee
Q 036518 50 FKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETV 86 (223)
Q Consensus 50 LRk~Ah~LKpvV~IGK~GVTdgVIeeI~~~Lk~hELV 86 (223)
+..++.+-+|++.+|.+|-++++++-++ ++-....|
T Consensus 140 ~~qlg~~~kPvvlln~~gfw~~l~~~l~-~~~~~Gfi 175 (199)
T 3qua_A 140 AGYLGMHDKPLILLDPFGHYDGLLTWLR-GLVPTGYV 175 (199)
T ss_dssp HHHTTSCCCCEEEECTTSTTHHHHHHHH-HTTTTTSS
T ss_pred HHHhccCCCCEEEEcCCccchHHHHHHH-HHHHCCCC
Confidence 4556667799999999999999999886 55555444
No 20
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=20.62 E-value=1.6e+02 Score=21.27 Aligned_cols=59 Identities=8% Similarity=0.008 Sum_probs=43.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhcCCCeeee----CCCCCCHHHHHHHHHHHHhCCeeE-EEec
Q 036518 33 QGPVVKPHELTGEERFYFKKMAQKRSNYVPI----GRRGVFGGVILNMHMHWKKHETVK-VFCK 91 (223)
Q Consensus 33 ~~p~~dpe~LT~kERk~LRk~Ah~LKpvV~I----GK~GVTdgVIeeI~~~Lk~hELVK-Vkv~ 91 (223)
+.+......||+.|...|+.+.+.-.+-++. -+-|+..+++..+=..|+...||| ++..
T Consensus 9 ~~~~~k~~~Lt~~q~~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk~LE~kglIkr~~~~ 72 (91)
T 2dk5_A 9 SQNAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLESKKLIKAVKSV 72 (91)
T ss_dssp CCCCCCCCCSCSSHHHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEECCS
T ss_pred HHHHhhhcCCCHHHHHHHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCC
Confidence 3444556679999999999999855444433 346788888999999999999998 4433
Done!