BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036519
(365 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 81/136 (59%), Gaps = 14/136 (10%)
Query: 235 FSDETTQKGLVVNWCPQLGVLAHEATGCFLTHCGWNSTIEALRLGVPMLAMPLWTDQSTN 294
F++E +GL+ +WCPQ VL H + G FLTHCGWNST E++ GVPML P + DQ T+
Sbjct: 347 FTNEIADRGLIASWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTD 406
Query: 295 SKYVMDVWKMGLKVPADEKGIVRREAIAHCIGEILEGDKWRNF----------AKEAVAK 344
+++ + W++G+++ + V+RE +A I E++ GDK + A+E
Sbjct: 407 CRFICNEWEIGMEIDTN----VKREELAKLINEVIAGDKGKKMKQKAMELKKKAEENTRP 462
Query: 345 GGSSDKNIDDFVANLI 360
GG S N++ + +++
Sbjct: 463 GGCSYMNLNKVIKDVL 478
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 106/242 (43%), Gaps = 33/242 (13%)
Query: 11 SSKLAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSL--HRDPSS---SI 65
+++ H +++ YP QGH+NPL + +K L G +T V T + K L R P +
Sbjct: 5 ANRKPHVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDGFT 64
Query: 66 SIPLETISDGYD--EGRSAQAETDQAYVDRFWQIGVQTLTELVERMND------VDCIVY 117
E+I DG EG ++ + ++ EL+ R+N V C+V
Sbjct: 65 DFNFESIPDGLTPMEGDGDVSQDVPTLCQSVRKNFLKPYCELLTRLNHSTNVPPVTCLVS 124
Query: 118 DSFLPWALDVAKKFGLTGAAFLTQS-CTVASIYH---YVNKGLIKLP---------LTGD 164
D + + + A++F L + + S C++ ++ H +V +G+I L
Sbjct: 125 DCCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGIIPFKDESYLTNGCLETK 184
Query: 165 QVFLPGLPPLDPQDTPSFI---NDPASYPAFFDMILTRQFSNIDKADWILCNTFYELEKE 221
++PGL +D FI N FF + R ++K IL NTF ELE +
Sbjct: 185 VDWIPGLKNFRLKDIVDFIRTTNPNDIMLEFFIEVADR----VNKDTTILLNTFNELESD 240
Query: 222 VI 223
VI
Sbjct: 241 VI 242
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 82/149 (55%), Gaps = 14/149 (9%)
Query: 223 IKESEQSKLPENFSDETTQKGLVVNWCPQLGVLAHEATGCFLTHCGWNSTIEALRLGVPM 282
+++ + LPE F ++T G+VV W PQ VLAHEA G F+THCGWNS E++ GVP+
Sbjct: 307 LRDKARVHLPEGFLEKTRGYGMVVPWAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPL 366
Query: 283 LAMPLWTDQSTNSKYVMDVWKMGLKVPADEKGIVRREAIAHCIGEILEGDK--------- 333
+ P + DQ N + V DV ++G+++ E G+ + + C +IL +K
Sbjct: 367 ICRPFFGDQRLNGRMVEDVLEIGVRI---EGGVFTKSGLMSCFDQILSQEKGKKLRENLR 423
Query: 334 -WRNFAKEAVAKGGSSDKNIDDFVANLIS 361
R A AV GSS +N V +L+S
Sbjct: 424 ALRETADRAVGPKGSSTENFITLV-DLVS 451
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 101/230 (43%), Gaps = 24/230 (10%)
Query: 9 SASSKLAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKV--TLVTTYFISKSLHRDPSSSIS 66
S ++ H VL++P H PLL +RL + +T + S+ D ++
Sbjct: 2 SQTTTNPHVAVLAFPFSTHAAPLLAVVRRLAAAAPHAVFSFFSTSQSNASIFHDSMHTMQ 61
Query: 67 IPLET--ISDGYDEGRSAQAETDQAYVDRFWQIGVQTLTE-----LVERMNDVDCIVYDS 119
+++ ISDG EG A Q ++ F + ++ + + E V C+V D+
Sbjct: 62 CNIKSYDISDGVPEGY-VFAGRPQEDIELFTRAAPESFRQGMVMAVAETGRPVSCLVADA 120
Query: 120 FLPWALDVAKKFGLTGAAFLTQSCTVASIYHYVNKGLIKLPLTGDQV-------FLPGLP 172
F+ +A D+A + G+ F T S + Y+++ K+ ++G Q F+PG+
Sbjct: 121 FIWFAADMAAEMGVAWLPFWTAGPNSLSTHVYIDEIREKIGVSGIQGREDELLNFIPGMS 180
Query: 173 PL---DPQDTPSFINDPASYPAFFDMILTRQFSNIDKADWILCNTFYELE 219
+ D Q+ F N + F +L R + KA + N+F EL+
Sbjct: 181 KVRFRDLQEGIVFGN----LNSLFSRMLHRMGQVLPKATAVFINSFEELD 226
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 99.0 bits (245), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 73/114 (64%), Gaps = 4/114 (3%)
Query: 231 LPENFSDETTQKGLVVN-WCPQLGVLAHEATGCFLTHCGWNSTIEALRLGVPMLAMPLWT 289
LP F + T ++G V+ W PQ VLAH +TG FLTHCGWNST+E++ G+P++A PL+
Sbjct: 328 LPPGFLERTKKRGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYA 387
Query: 290 DQSTNSKYVMDVWKMGLKVPADEKGIVRREAIAHCIGEILEGDKW---RNFAKE 340
+Q N+ + + + L+ A + G+VRRE +A + ++EG++ RN KE
Sbjct: 388 EQKMNAVLLSEDIRAALRPRAGDDGLVRREEVARVVKGLMEGEEGKGVRNKMKE 441
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 96/232 (41%), Gaps = 16/232 (6%)
Query: 12 SKLAHCLVLSYPAQGHMNPLLQFSKRLEH-NGIKVTLVTTYFISKS------LHRDPSSS 64
SK H ++ P GH+ PL++F+KRL H +G+ VT V S L PSS
Sbjct: 4 SKTPHVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGPPSKAQRTVLDSLPSSI 63
Query: 65 ISIPLETISDGYDEGRSAQAETDQAY-VDRFWQIGVQTLTELVERMNDVDCIVYDSFLPW 123
S+ L + D D S + E+ + V R + VE +V D F
Sbjct: 64 SSVFLPPV-DLTDLSSSTRIESRISLTVTRSNPELRKVFDSFVEGGRLPTALVVDLFGTD 122
Query: 124 ALDVAKKFGLTGAAFLTQSCTVASIYHYVNK----GLIKLPLTGDQVFLPGLPPLDPQDT 179
A DVA +F + F + V S + ++ K + + + LPG P+ +D
Sbjct: 123 AFDVAVEFHVPPYIFYPTTANVLSFFLHLPKLDETVSCEFRELTEPLMLPGCVPVAGKD- 181
Query: 180 PSFINDPASYPAFFDMILTRQFSNIDKADWILCNTFYELEKEVIKESEQSKL 231
F++ L +A+ IL NTF+ELE IK ++ L
Sbjct: 182 --FLDPAQDRKDDAYKWLLHNTKRYKEAEGILVNTFFELEPNAIKALQEPGL 231
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 84/150 (56%), Gaps = 13/150 (8%)
Query: 226 SEQSKLPENFSD--ETTQKGLVVNWCPQLGVLAHEATGCFLTHCGWNSTIEALRLGVPML 283
+E+ PE F + E KG++ W PQ+ VLAH+A G F++HCGWNS +E++ GVP+L
Sbjct: 315 AEKKVFPEGFLEWMELEGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPIL 374
Query: 284 AMPLWTDQSTNSKYVMDVWKMGLKVPAD-EKG--IVRREAIAHCIGEILEGD-------- 332
P++ +Q N+ ++ W +GL + D KG +V E I + ++++ D
Sbjct: 375 TWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLMDKDSIVHKKVQ 434
Query: 333 KWRNFAKEAVAKGGSSDKNIDDFVANLISS 362
+ + ++ AV GGSS ++ + ++ S
Sbjct: 435 EMKEMSRNAVVDGGSSLISVGKLIDDITGS 464
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 82/149 (55%), Gaps = 17/149 (11%)
Query: 226 SEQSKLPENFSD--ETTQKGLVVNWCPQLGVLAHEATGCFLTHCGWNSTIEALRLGVPML 283
+E+ PE F + E KG++ W PQ+ VLAH+A G F++HCGWNS +E++ GVP+L
Sbjct: 315 AEKKVFPEGFLEWMELEGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPIL 374
Query: 284 AMPLWTDQSTNSKYVMDVWKMGLKVPAD-EKG--IVRREAIAHCIGEILEGD-------- 332
P++ +Q N+ ++ W +GL + D KG +V E I + ++++ D
Sbjct: 375 TWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLMDKDSIVHKKVQ 434
Query: 333 KWRNFAKEAVAKGGSS----DKNIDDFVA 357
+ + ++ AV GGSS K IDD
Sbjct: 435 EMKEMSRNAVVDGGSSLISVGKLIDDITG 463
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 62/106 (58%), Gaps = 3/106 (2%)
Query: 228 QSKLPENFSDETTQKGLVVNWCPQLGVLAHEATGCFLTHCGWNSTIEALRLGVPMLAMPL 287
+ KLP+ F + T KG +V W PQ+ +L H + G FLTH GWNS +E + GVPM++ P
Sbjct: 314 KEKLPKGFLERTKTKGKIVAWAPQVEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPF 373
Query: 288 WTDQSTNSKYVMDVWKMGLKVPADEKGIVRREAIAHCIGEILEGDK 333
+ DQ N+ V ++G+ V + G++ +E+I + + +K
Sbjct: 374 FGDQGLNTILTESVLEIGVGV---DNGVLTKESIKKALELTMSSEK 416
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 47/224 (20%), Positives = 83/224 (37%), Gaps = 18/224 (8%)
Query: 6 KKASASSKLAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKS---LHRDPS 62
K + L H VL++P H PLL K++ KVT + + R
Sbjct: 5 KNEMNGNNLLHVAVLAFPFGTHAAPLLSLVKKIATEAPKVTFSFFCTTTTNDTLFSRSNE 64
Query: 63 SSISIPLETISDGYDEGRSAQAETDQA---YVDRFWQIGVQTLTELV-ERMNDVDCIVYD 118
+I + DG +G + + ++ + + E V E ++ C+V D
Sbjct: 65 FLPNIKYYNVHDGLPKGYVSSGNPREPIFLFIKAMQENFKHVIDEAVAETGKNITCLVTD 124
Query: 119 SFLPWALDVAKKFGLTGAAFLTQSCTVASIYHYVNKGLIKLPLTGDQV-------FLPGL 171
+F + D+A++ T S+ +V LI+ +V LPG
Sbjct: 125 AFFWFGADLAEEMHAKWVPLWTAGP--HSLLTHVYTDLIREKTGSKEVHDVKSIDVLPGF 182
Query: 172 PPLDPQDTPSFINDPASYPAFFDMILTRQFSNIDKADWILCNTF 215
P L D P + P F +L + + +A+ + N+F
Sbjct: 183 PELKASDLPEGVIKDIDVP--FATMLHKMGLELPRANAVAINSF 224
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 201 FSNIDKADWILCNTFYELEKEVIKESEQSKLPENFSDETTQKGLVVNWCPQLGVLAHEAT 260
S +D DW + + + ++ ++P N V W PQL +L +
Sbjct: 277 LSAVDGLDWHVVLSVGRF----VDPADLGEVPPNVE--------VHQWVPQLDILTKAS- 323
Query: 261 GCFLTHCGWNSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVWKMGLKVPADEKGIVR-RE 319
F+TH G ST+EAL VPM+A+P +Q+ N++ ++++ +G +P D+ + RE
Sbjct: 324 -AFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVEL-GLGRHIPRDQVTAEKLRE 381
Query: 320 AI 321
A+
Sbjct: 382 AV 383
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 51/122 (41%), Gaps = 10/122 (8%)
Query: 1 MENNEKKASASSKLAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLHRD 60
M + + AS + + H + P GH+NP L + L G +V +Y I+
Sbjct: 1 MTSEHRSASVTPR--HISFFNIPGHGHVNPSLGIVQELVARGHRV----SYAITDEFAAQ 54
Query: 61 PSSSISIPL--ETISDGYDEGRSAQAETDQAYVDRFWQIGVQTLTELVERMND--VDCIV 116
++ + P+ ++I + E ++ + F V+ L +L + D D IV
Sbjct: 55 VKAAGATPVVYDSILPKESNPEESWPEDQESAMGLFLDEAVRVLPQLEDAYADDRPDLIV 114
Query: 117 YD 118
YD
Sbjct: 115 YD 116
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%)
Query: 248 WCPQLGVLAHEATGCFLTHCGWNSTIEALRLGVPMLAMPLWTDQSTN 294
W PQ +L H T F+TH G N EA+ G+P + +PL+ DQ N
Sbjct: 75 WIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDN 121
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 17/106 (16%)
Query: 190 PAFFDMILTRQFSNIDKADWILCNTFYELEKEVIKESEQSKLPENFSDETTQKGLVVNWC 249
PAF+ + R F N+ W L ++ ++V +E +LP+N V +W
Sbjct: 247 PAFYRECV-RAFGNL--PGWHLV---LQIGRKVTP-AELGELPDNVE--------VHDWV 291
Query: 250 PQLGVLAHEATGCFLTHCGWNSTIEALRLGVPMLAMPLWTDQSTNS 295
PQL +L F+TH G + E L PM+A+P DQ N+
Sbjct: 292 PQLAILRQ--ADLFVTHAGAGGSQEGLATATPMIAVPQAVDQFGNA 335
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 52/127 (40%), Gaps = 6/127 (4%)
Query: 15 AHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTL-VTTYFISKSLHRDPSSSISIPLETIS 73
AH + S A GH+NP L+ + L G +VT + F K P + +
Sbjct: 8 AHIAMFSIAAHGHVNPSLEVIRELVARGHRVTYAIPPVFADKVAATGPRPVL---YHSTL 64
Query: 74 DGYDEGRSAQAETDQAYVDRFWQIGVQTLTELVERMND--VDCIVYDSFLPWALDVAKKF 131
G D A T V+ F +Q L +L + D D +++D A +A+++
Sbjct: 65 PGPDADPEAWGSTLLDNVEPFLNDAIQALPQLADAYADDIPDLVLHDITSYPARVLARRW 124
Query: 132 GLTGAAF 138
G+ +
Sbjct: 125 GVPAVSL 131
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 247 NWCPQLGVLAHEATGCFLTHCGWNSTIEALRLGVPMLAMPLWTDQSTNS 295
W P VLAH A C LTH + +EA GVP++ +P + ++ S
Sbjct: 287 QWIPFHSVLAH-ARAC-LTHGTTGAVLEAFAAGVPLVLVPHFATEAAPS 333
>pdb|3IAA|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
pdb|3IAA|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
Length = 416
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 247 NWCPQLGVLAHEATGCFLTHCGWNSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVWKMGL 306
W P + VL +AT C +TH G + EAL G P++ +P D ++ V D +G
Sbjct: 303 RWVPHVKVL-EQATVC-VTHGGXGTLXEALYWGRPLVVVPQSFDVQPXARRV-DQLGLGA 359
Query: 307 KVPADE 312
+P ++
Sbjct: 360 VLPGEK 365
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 247 NWCPQLGVLAHEATGCFLTHCGWNSTIEALRLGVPMLAMPLWTDQS 292
+W PQ +L H + H G +T+ AL GVP L+ P W S
Sbjct: 298 SWVPQAALLPH--VDLVVHHGGSGTTLGALGAGVPQLSFP-WAGDS 340
>pdb|3RSC|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
pdb|3RSC|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
Length = 415
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 247 NWCPQLGVLAHEATGCFLTHCGWNSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVWKMGL 306
W P + VL +AT C +TH G + EAL G P++ +P D ++ V D +G
Sbjct: 303 RWVPHVKVL-EQATVC-VTHGGXGTLXEALYWGRPLVVVPQSFDVQPXARRV-DQLGLGA 359
Query: 307 KVPADE 312
+P ++
Sbjct: 360 VLPGEK 365
>pdb|1A71|A Chain A, Ternary Complex Of An Active Site Double Mutant Of Horse
Liver Alcohol Dehydrogenase, Phe93>trp, Val203>ala With
Nad And Trifluoroethanol
pdb|1A71|B Chain B, Ternary Complex Of An Active Site Double Mutant Of Horse
Liver Alcohol Dehydrogenase, Phe93>trp, Val203>ala With
Nad And Trifluoroethanol
pdb|1A72|A Chain A, An Active-Site Double Mutant (Phe93->trp, Val203->ala) Of
Horse Liver Alcohol Dehydrogenase In Complex With The
Isosteric Nad Analog Cpad
Length = 374
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Query: 28 MNPLLQFSKRLEHNGI--------KVTLVTTYFISKSLHRDPSSSISIPLETISDGYDEG 79
MNP+L S R I V + F++K DP + +P E I++G+D
Sbjct: 303 MNPMLLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINEGFDLL 362
Query: 80 RSAQA 84
RS ++
Sbjct: 363 RSGES 367
>pdb|1AXE|A Chain A, Crystal Structure Of The Active-Site Mutant Phe93->trp Of
Horse Liver Alcohol Dehydrogenase In Complex With Nad
And Inhibitor Trifluoroethanol
pdb|1AXE|B Chain B, Crystal Structure Of The Active-Site Mutant Phe93->trp Of
Horse Liver Alcohol Dehydrogenase In Complex With Nad
And Inhibitor Trifluoroethanol
Length = 374
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Query: 28 MNPLLQFSKRLEHNGI--------KVTLVTTYFISKSLHRDPSSSISIPLETISDGYDEG 79
MNP+L S R I V + F++K DP + +P E I++G+D
Sbjct: 303 MNPMLLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINEGFDLL 362
Query: 80 RSAQA 84
RS ++
Sbjct: 363 RSGES 367
>pdb|1QV6|A Chain A, Horse Liver Alcohol Dehydrogenase His51glnLYS228ARG MUTANT
Complexed With Nad+ And 2,4-Difluorobenzyl Alcohol
pdb|1QV6|B Chain B, Horse Liver Alcohol Dehydrogenase His51glnLYS228ARG MUTANT
Complexed With Nad+ And 2,4-Difluorobenzyl Alcohol
pdb|1QV7|A Chain A, Horse Liver Alcohol Dehydrogenase His51glnLYS228ARG MUTANT
Complexed With Nad+ And 2,3-Difluorobenzyl Alcohol
pdb|1QV7|B Chain B, Horse Liver Alcohol Dehydrogenase His51glnLYS228ARG MUTANT
Complexed With Nad+ And 2,3-Difluorobenzyl Alcohol
Length = 374
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Query: 28 MNPLLQFSKRLEHNGI--------KVTLVTTYFISKSLHRDPSSSISIPLETISDGYDEG 79
MNP+L S R I V + F++K DP + +P E I++G+D
Sbjct: 303 MNPMLLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINEGFDLL 362
Query: 80 RSAQA 84
RS ++
Sbjct: 363 RSGES 367
>pdb|1AXG|A Chain A, Crystal Structure Of The Val203->ala Mutant Of Liver
Alcohol Dehydrogenase Complexed With Cofactor Nad And
Inhibitor Trifluoroethanol Solved To 2.5 Angstrom
Resolution
pdb|1AXG|B Chain B, Crystal Structure Of The Val203->ala Mutant Of Liver
Alcohol Dehydrogenase Complexed With Cofactor Nad And
Inhibitor Trifluoroethanol Solved To 2.5 Angstrom
Resolution
pdb|1AXG|C Chain C, Crystal Structure Of The Val203->ala Mutant Of Liver
Alcohol Dehydrogenase Complexed With Cofactor Nad And
Inhibitor Trifluoroethanol Solved To 2.5 Angstrom
Resolution
pdb|1AXG|D Chain D, Crystal Structure Of The Val203->ala Mutant Of Liver
Alcohol Dehydrogenase Complexed With Cofactor Nad And
Inhibitor Trifluoroethanol Solved To 2.5 Angstrom
Resolution
Length = 374
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Query: 28 MNPLLQFSKRLEHNGI--------KVTLVTTYFISKSLHRDPSSSISIPLETISDGYDEG 79
MNP+L S R I V + F++K DP + +P E I++G+D
Sbjct: 303 MNPMLLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINEGFDLL 362
Query: 80 RSAQA 84
RS ++
Sbjct: 363 RSGES 367
>pdb|1QLH|A Chain A, Horse Liver Alcohol Dehydrogenase Complexed To Nad Double
Mutant Of Gly 293 Ala And Pro 295 Thr
pdb|1QLJ|A Chain A, Horse Liver Alcohol Dehydrogenase Apo Enzyme Double Mutant
Of Gly 293 Ala And Pro 295 Thr
Length = 374
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Query: 28 MNPLLQFSKRLEHNGI--------KVTLVTTYFISKSLHRDPSSSISIPLETISDGYDEG 79
MNP+L S R I V + F++K DP + +P E I++G+D
Sbjct: 303 MNPMLLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINEGFDLL 362
Query: 80 RSAQA 84
RS ++
Sbjct: 363 RSGES 367
>pdb|1EE2|A Chain A, The Structure Of Steroid-Active Alcohol Dehydrogenase At
1.54 A Resolution
Length = 373
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Query: 28 MNPLLQFSKRLEHNGI--------KVTLVTTYFISKSLHRDPSSSISIPLETISDGYDEG 79
MNP+L S R I V + F++K DP + +P E I++G+D
Sbjct: 302 MNPMLLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINEGFDLL 361
Query: 80 RSAQA 84
RS ++
Sbjct: 362 RSGKS 366
>pdb|1MGO|A Chain A, Horse Liver Alcohol Dehydrogenase Phe93ala Mutant
pdb|1MGO|B Chain B, Horse Liver Alcohol Dehydrogenase Phe93ala Mutant
Length = 374
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Query: 28 MNPLLQFSKRLEHNGI--------KVTLVTTYFISKSLHRDPSSSISIPLETISDGYDEG 79
MNP+L S R I V + F++K DP + +P E I++G+D
Sbjct: 303 MNPMLLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINEGFDLL 362
Query: 80 RSAQA 84
RS ++
Sbjct: 363 RSGES 367
>pdb|6ADH|A Chain A, Structure Of Triclinic Ternary Complex Of Horse Liver
Alcohol Dehydrogenase At 2.9 Angstroms Resolution
pdb|6ADH|B Chain B, Structure Of Triclinic Ternary Complex Of Horse Liver
Alcohol Dehydrogenase At 2.9 Angstroms Resolution
pdb|2OHX|A Chain A, Refined Crystal Structure Of Liver Alcohol Dehydrogenase-
Nadh Complex At 1.8 Angstroms Resolution
pdb|2OHX|B Chain B, Refined Crystal Structure Of Liver Alcohol Dehydrogenase-
Nadh Complex At 1.8 Angstroms Resolution
pdb|2OXI|A Chain A, Refined Crystal Structure Of Cu-Substituted Alcohol
Dehydrogenase At 2.1 Angstroms Resolution
pdb|2OXI|B Chain B, Refined Crystal Structure Of Cu-Substituted Alcohol
Dehydrogenase At 2.1 Angstroms Resolution
pdb|1HLD|A Chain A, Structures Of Horse Liver Alcohol Dehydrogenase Complexed
With Nad+ And Substituted Benzyl Alcohols
pdb|1HLD|B Chain B, Structures Of Horse Liver Alcohol Dehydrogenase Complexed
With Nad+ And Substituted Benzyl Alcohols
pdb|1ADB|A Chain A, Crystallographic Studies Of Isosteric Nad Analogues Bound
To Alcohol Dehydrogenase: Specificity And Substrate
Binding In Two Ternary Complexes
pdb|1ADB|B Chain B, Crystallographic Studies Of Isosteric Nad Analogues Bound
To Alcohol Dehydrogenase: Specificity And Substrate
Binding In Two Ternary Complexes
pdb|1ADC|A Chain A, Crystallographic Studies Of Isosteric Nad Analogues Bound
To Alcohol Dehydrogenase: Specificity And Substrate
Binding In Two Ternary Complexes
pdb|1ADC|B Chain B, Crystallographic Studies Of Isosteric Nad Analogues Bound
To Alcohol Dehydrogenase: Specificity And Substrate
Binding In Two Ternary Complexes
pdb|3BTO|A Chain A, Horse Liver Alcohol Dehydrogenase Complexed To Nadh And
(1s, 3s)3-Butylthiolane 1-Oxide
pdb|3BTO|B Chain B, Horse Liver Alcohol Dehydrogenase Complexed To Nadh And
(1s, 3s)3-Butylthiolane 1-Oxide
pdb|3BTO|C Chain C, Horse Liver Alcohol Dehydrogenase Complexed To Nadh And
(1s, 3s)3-Butylthiolane 1-Oxide
pdb|3BTO|D Chain D, Horse Liver Alcohol Dehydrogenase Complexed To Nadh And
(1s, 3s)3-Butylthiolane 1-Oxide
pdb|1LDY|A Chain A, Horse Liver Alcohol Dehydrogenase Complexed To Nadh And
Cyclohexyl Formamide (Cxf)
pdb|1LDY|B Chain B, Horse Liver Alcohol Dehydrogenase Complexed To Nadh And
Cyclohexyl Formamide (Cxf)
pdb|1LDY|C Chain C, Horse Liver Alcohol Dehydrogenase Complexed To Nadh And
Cyclohexyl Formamide (Cxf)
pdb|1LDY|D Chain D, Horse Liver Alcohol Dehydrogenase Complexed To Nadh And
Cyclohexyl Formamide (Cxf)
pdb|1LDE|A Chain A, Horse Liver Alcohol Dehydrogenase Complexed To Nadh And
N-Formyl Piperdine
pdb|1LDE|B Chain B, Horse Liver Alcohol Dehydrogenase Complexed To Nadh And
N-Formyl Piperdine
pdb|1LDE|C Chain C, Horse Liver Alcohol Dehydrogenase Complexed To Nadh And
N-Formyl Piperdine
pdb|1LDE|D Chain D, Horse Liver Alcohol Dehydrogenase Complexed To Nadh And
N-Formyl Piperdine
pdb|1BTO|A Chain A, Horse Liver Alcohol Dehydrogenase Complexed To Nadh And
(1s, 3r)3-Butylthiolane 1-Oxide
pdb|1BTO|B Chain B, Horse Liver Alcohol Dehydrogenase Complexed To Nadh And
(1s, 3r)3-Butylthiolane 1-Oxide
pdb|1BTO|C Chain C, Horse Liver Alcohol Dehydrogenase Complexed To Nadh And
(1s, 3r)3-Butylthiolane 1-Oxide
pdb|1BTO|D Chain D, Horse Liver Alcohol Dehydrogenase Complexed To Nadh And
(1s, 3r)3-Butylthiolane 1-Oxide
pdb|1HET|A Chain A, Atomic X-Ray Structure Of Liver Alcohol Dehydrogenase
Containing A Hydroxide Adduct To Nadh
pdb|1HET|B Chain B, Atomic X-Ray Structure Of Liver Alcohol Dehydrogenase
Containing A Hydroxide Adduct To Nadh
pdb|1HEU|A Chain A, Atomic X-Ray Structure Of Liver Alcohol Dehydrogenase
Containing Cadmium And A Hydroxide Adduct To Nadh
pdb|1HEU|B Chain B, Atomic X-Ray Structure Of Liver Alcohol Dehydrogenase
Containing Cadmium And A Hydroxide Adduct To Nadh
pdb|1HF3|A Chain A, Atomic X-Ray Structure Of Liver Alcohol Dehydrogenase
Containing Cadmium And A Hydroxide Adduct To Nadh
pdb|1HF3|B Chain B, Atomic X-Ray Structure Of Liver Alcohol Dehydrogenase
Containing Cadmium And A Hydroxide Adduct To Nadh
pdb|1MG0|A Chain A, Horse Liver Alcohol Dehydrogenase Complexed With Nad+ And
2, 3-Difluorobenzyl Alcohol
pdb|1MG0|B Chain B, Horse Liver Alcohol Dehydrogenase Complexed With Nad+ And
2, 3-Difluorobenzyl Alcohol
pdb|1MG0|C Chain C, Horse Liver Alcohol Dehydrogenase Complexed With Nad+ And
2, 3-Difluorobenzyl Alcohol
pdb|1MG0|D Chain D, Horse Liver Alcohol Dehydrogenase Complexed With Nad+ And
2, 3-Difluorobenzyl Alcohol
pdb|1N92|A Chain A, Horse Liver Alcohol Dehydrogenase Complexed With Nad+ And
4- Iodopyrazole
pdb|1N92|B Chain B, Horse Liver Alcohol Dehydrogenase Complexed With Nad+ And
4- Iodopyrazole
pdb|1P1R|A Chain A, Horse Liver Alcohol Dehydrogenase Complexed With Nadh And
R- N-1-Methylhexylformamide
pdb|1P1R|B Chain B, Horse Liver Alcohol Dehydrogenase Complexed With Nadh And
R- N-1-Methylhexylformamide
pdb|1P1R|C Chain C, Horse Liver Alcohol Dehydrogenase Complexed With Nadh And
R- N-1-Methylhexylformamide
pdb|1P1R|D Chain D, Horse Liver Alcohol Dehydrogenase Complexed With Nadh And
R- N-1-Methylhexylformamide
pdb|1YE3|A Chain A, Horse Liver Alcohol Dehydrogenase Apoenzyme
pdb|2JHF|A Chain A, Structural Evidence For A Ligand Coordination Switch In
Liver Alcohol Dehydrogenase
pdb|2JHF|B Chain B, Structural Evidence For A Ligand Coordination Switch In
Liver Alcohol Dehydrogenase
pdb|2JHG|A Chain A, Structural Evidence For A Ligand Coordination Switch In
Liver Alcohol Dehydrogenase
pdb|2JHG|B Chain B, Structural Evidence For A Ligand Coordination Switch In
Liver Alcohol Dehydrogenase
pdb|1ADF|A Chain A, Crystallographic Studies Of Two Alcohol
Dehydrogenase-Bound Analogs Of Thiazole-4-Carboxamide
Adenine Dinucleotide (Tad), The Active Anabolite Of The
Antitumor Agent Tiazofurin
pdb|1ADG|A Chain A, Crystallographic Studies Of Two Alcohol
Dehydrogenase-Bound Analogs Of Thiazole-4-Carboxamide
Adenine Dinucleotide (Tad), The Active Anabolite Of The
Antitumor Agent Tiazofurin
pdb|5ADH|A Chain A, Interdomain Motion In Liver Alcohol Dehydrogenase.
Structural And Energetic Analysis Of The Hinge Bending
Mode
pdb|7ADH|A Chain A, Three-Dimensional Structure Of Isonicotinimidylated Liver
Alcohol Dehydrogenase
pdb|8ADH|A Chain A, Interdomain Motion In Liver Alcohol Dehydrogenase.
Structural And Energetic Analysis Of The Hinge Bending
Mode
pdb|4DWV|A Chain A, Horse Alcohol Dehydrogenase Complexed With Nad+ And
2,3,4,5,6- Pentafluorobenzyl Alcohol
pdb|4DWV|B Chain B, Horse Alcohol Dehydrogenase Complexed With Nad+ And
2,3,4,5,6- Pentafluorobenzyl Alcohol
pdb|4DXH|A Chain A, Horse Liver Alcohol Dehydrogenase Complexed With Nad+ And
2,2,2- Trifluoroethanol
pdb|4DXH|B Chain B, Horse Liver Alcohol Dehydrogenase Complexed With Nad+ And
2,2,2- Trifluoroethanol
Length = 374
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Query: 28 MNPLLQFSKRLEHNGI--------KVTLVTTYFISKSLHRDPSSSISIPLETISDGYDEG 79
MNP+L S R I V + F++K DP + +P E I++G+D
Sbjct: 303 MNPMLLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINEGFDLL 362
Query: 80 RSAQA 84
RS ++
Sbjct: 363 RSGES 367
>pdb|1JU9|A Chain A, Horse Liver Alcohol Dehydrogenase Val292ser Mutant
pdb|1JU9|B Chain B, Horse Liver Alcohol Dehydrogenase Val292ser Mutant
Length = 374
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Query: 28 MNPLLQFSKRLEHNGI--------KVTLVTTYFISKSLHRDPSSSISIPLETISDGYDEG 79
MNP+L S R I V + F++K DP + +P E I++G+D
Sbjct: 303 MNPMLLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINEGFDLL 362
Query: 80 RSAQA 84
RS ++
Sbjct: 363 RSGES 367
>pdb|1N8K|A Chain A, Horse Liver Alcohol Dehydrogenase Val292thr Mutant
Complexed To Nad+ And Pyrazole
pdb|1N8K|B Chain B, Horse Liver Alcohol Dehydrogenase Val292thr Mutant
Complexed To Nad+ And Pyrazole
Length = 374
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Query: 28 MNPLLQFSKRLEHNGI--------KVTLVTTYFISKSLHRDPSSSISIPLETISDGYDEG 79
MNP+L S R I V + F++K DP + +P E I++G+D
Sbjct: 303 MNPMLLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINEGFDLL 362
Query: 80 RSAQA 84
RS ++
Sbjct: 363 RSGES 367
>pdb|1EE2|B Chain B, The Structure Of Steroid-Active Alcohol Dehydrogenase At
1.54 A Resolution
Length = 373
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Query: 28 MNPLLQFSKRLEHNGI--------KVTLVTTYFISKSLHRDPSSSISIPLETISDGYDEG 79
MNP+L S R I V + F++K DP + +P E I++G+D
Sbjct: 302 MNPMLLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINEGFDLL 361
Query: 80 RSAQA 84
RS ++
Sbjct: 362 RSGKS 366
>pdb|4AMB|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AMB|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
Length = 400
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 245 VVNWCPQLGVLAHEATGCFLTHCGWNSTIEALRLGVPMLAMPLWTDQSTN 294
VV W P LG L E + H G + + AL GVP +P + Q TN
Sbjct: 292 VVEWIP-LGALL-ETCDAIIHHGGSGTLLTALAAGVPQCVIPHGSYQDTN 339
>pdb|4AMG|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AMG|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|C Chain C, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|D Chain D, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
Length = 400
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 245 VVNWCPQLGVLAHEATGCFLTHCGWNSTIEALRLGVPMLAMPLWTDQSTN 294
VV W P LG L E + H G + + AL GVP +P + Q TN
Sbjct: 292 VVEWIP-LGALL-ETCDAIIHHGGSGTLLTALAAGVPQCVIPHGSYQDTN 339
>pdb|4A0G|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0G|B Chain B, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0G|C Chain C, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0G|D Chain D, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0H|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To 7-Keto
8-Amino Pelargonic Acid (Kapa)
pdb|4A0H|B Chain B, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To 7-Keto
8-Amino Pelargonic Acid (Kapa)
pdb|4A0R|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To
Dethiobiotin (Dtb).
pdb|4A0R|B Chain B, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To
Dethiobiotin (Dtb)
Length = 831
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Query: 94 FWQIGVQTLTELVERMNDVDC---IVYDSFLPWALDVA 128
FW++GV+T TEL+ D+ C ++ +P A+ +A
Sbjct: 641 FWRLGVETTTELLGCKPDIACFAKLLTGGMVPLAVTLA 678
>pdb|4B6V|A Chain A, The Third Member Of The Eif4e Family Represses Gene
Expression Via A Novel Mode Of Recognition Of The
Methyl-7 Guanosine Cap Moiety
Length = 207
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Query: 286 PLWTDQSTNSKYVMDVWKMGLKVPADEKGIVRREAIAHCIGE 327
PLW ++S N+K VWKM KVP D V +E + IGE
Sbjct: 96 PLWEEES-NAK--GGVWKM--KVPKDSTSTVWKELLLATIGE 132
>pdb|2P6P|A Chain A, X-Ray Crystal Structure Of C-C Bond-Forming
Dtdp-D-Olivose-Transferase Urdgt2
pdb|2P6P|B Chain B, X-Ray Crystal Structure Of C-C Bond-Forming
Dtdp-D-Olivose-Transferase Urdgt2
Length = 384
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 6/95 (6%)
Query: 246 VNWCPQLGVLAHEATGCFLTHCGWNSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVWKMG 305
V W P L V+A + H G ST+ L GVP L +P + ++ V D
Sbjct: 268 VGWTP-LDVVA-PTCDLLVHHAGGVSTLTGLSAGVPQLLIPKGSVLEAPARRVADYGAAI 325
Query: 306 LKVPADEKGIVRREAIAHCIGEILEGDKWRNFAKE 340
+P ++ EAIA E+ D + A++
Sbjct: 326 ALLPGEDS----TEAIADSCQELQAKDTYARRAQD 356
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,026,373
Number of Sequences: 62578
Number of extensions: 460903
Number of successful extensions: 1124
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1103
Number of HSP's gapped (non-prelim): 40
length of query: 365
length of database: 14,973,337
effective HSP length: 100
effective length of query: 265
effective length of database: 8,715,537
effective search space: 2309617305
effective search space used: 2309617305
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)