Query 036519
Match_columns 365
No_of_seqs 124 out of 1377
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 02:51:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036519.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036519hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02555 limonoid glucosyltran 100.0 4.6E-55 1E-59 409.3 32.4 353 8-362 1-470 (480)
2 PLN02173 UDP-glucosyl transfer 100.0 3.3E-54 7.2E-59 400.3 32.0 342 12-361 3-448 (449)
3 PLN02410 UDP-glucoronosyl/UDP- 100.0 1.5E-53 3.2E-58 397.7 31.7 342 8-361 1-450 (451)
4 PLN02562 UDP-glycosyltransfera 100.0 2.1E-53 4.6E-58 397.8 31.9 339 13-360 5-448 (448)
5 PLN02210 UDP-glucosyl transfer 100.0 1.9E-52 4.2E-57 391.7 32.0 344 11-360 5-454 (456)
6 PLN02152 indole-3-acetate beta 100.0 1.9E-52 4.1E-57 389.2 30.8 340 13-360 2-455 (455)
7 PLN02863 UDP-glucoronosyl/UDP- 100.0 3.2E-52 6.8E-57 391.4 30.9 349 12-362 7-472 (477)
8 PLN02448 UDP-glycosyltransfera 100.0 4.9E-52 1.1E-56 391.4 31.4 346 9-361 5-457 (459)
9 PLN02208 glycosyltransferase f 100.0 1.2E-51 2.6E-56 384.0 30.1 335 12-361 2-439 (442)
10 PLN02554 UDP-glycosyltransfera 100.0 4.7E-51 1E-55 386.1 30.1 342 14-363 2-480 (481)
11 PLN02992 coniferyl-alcohol glu 100.0 8.1E-51 1.7E-55 379.7 30.4 339 14-361 5-469 (481)
12 PLN02207 UDP-glycosyltransfera 100.0 1.5E-50 3.2E-55 377.3 31.1 344 13-361 2-465 (468)
13 PLN02764 glycosyltransferase f 100.0 1.6E-50 3.5E-55 374.5 30.6 338 12-362 3-446 (453)
14 PLN00164 glucosyltransferase; 100.0 1.9E-50 4.2E-55 380.5 31.6 344 13-362 2-474 (480)
15 PLN02670 transferase, transfer 100.0 1.7E-50 3.8E-55 377.2 30.2 349 10-362 2-466 (472)
16 PLN02534 UDP-glycosyltransfera 100.0 2.9E-50 6.2E-55 377.5 30.6 349 12-365 6-490 (491)
17 PLN03007 UDP-glucosyltransfera 100.0 1.4E-49 3E-54 376.6 30.6 343 13-362 4-481 (482)
18 PLN03004 UDP-glycosyltransfera 100.0 1.1E-49 2.4E-54 370.3 29.1 335 13-350 2-450 (451)
19 PLN00414 glycosyltransferase f 100.0 3.3E-49 7.2E-54 368.0 29.6 333 12-362 2-441 (446)
20 PLN02167 UDP-glycosyltransfera 100.0 3.4E-49 7.3E-54 372.9 30.0 346 13-363 2-474 (475)
21 PLN03015 UDP-glucosyl transfer 100.0 1.6E-48 3.6E-53 362.2 30.5 342 14-359 3-466 (470)
22 cd03784 GT1_Gtf_like This fami 100.0 6.2E-41 1.3E-45 314.4 20.7 309 15-341 1-381 (401)
23 TIGR01426 MGT glycosyltransfer 100.0 2.5E-39 5.4E-44 302.3 23.5 327 20-359 1-390 (392)
24 COG1819 Glycosyl transferases, 100.0 1.2E-39 2.6E-44 301.5 16.7 330 14-363 1-403 (406)
25 PF00201 UDPGT: UDP-glucoronos 100.0 3.2E-38 6.9E-43 304.0 7.4 330 16-360 2-439 (500)
26 PHA03392 egt ecdysteroid UDP-g 100.0 9.2E-36 2E-40 282.9 20.7 316 15-344 21-445 (507)
27 KOG1192 UDP-glucuronosyl and U 100.0 1.2E-30 2.6E-35 251.4 15.1 324 14-344 5-435 (496)
28 PRK12446 undecaprenyldiphospho 100.0 1.9E-27 4.1E-32 217.4 18.1 321 14-361 1-351 (352)
29 COG0707 MurG UDP-N-acetylgluco 99.9 7.2E-26 1.6E-30 204.6 20.6 327 15-360 1-352 (357)
30 PF13528 Glyco_trans_1_3: Glyc 99.9 2.3E-25 5E-30 202.5 16.8 284 15-328 1-317 (318)
31 TIGR00661 MJ1255 conserved hyp 99.9 5.4E-25 1.2E-29 199.8 18.2 288 16-334 1-317 (321)
32 PRK00726 murG undecaprenyldiph 99.9 4.4E-20 9.6E-25 170.5 22.7 323 14-359 1-355 (357)
33 cd03785 GT1_MurG MurG is an N- 99.8 9.1E-18 2E-22 154.7 17.9 307 16-344 1-337 (350)
34 TIGR01133 murG undecaprenyldip 99.8 6.6E-17 1.4E-21 148.8 20.2 308 15-344 1-334 (348)
35 TIGR00215 lpxB lipid-A-disacch 99.7 8.7E-17 1.9E-21 149.2 13.6 322 15-357 6-384 (385)
36 PRK13609 diacylglycerol glucos 99.6 1.5E-15 3.2E-20 141.5 12.2 113 240-362 255-372 (380)
37 PRK00025 lpxB lipid-A-disaccha 99.6 5.5E-15 1.2E-19 137.8 14.5 319 14-359 1-375 (380)
38 COG4671 Predicted glycosyl tra 99.6 1.5E-14 3.2E-19 125.6 15.7 307 11-330 6-364 (400)
39 TIGR03590 PseG pseudaminic aci 99.5 1.1E-14 2.3E-19 129.3 7.3 247 17-297 2-278 (279)
40 PF03033 Glyco_transf_28: Glyc 99.5 2.5E-15 5.4E-20 119.4 2.7 119 17-143 1-132 (139)
41 PF04101 Glyco_tran_28_C: Glyc 99.5 4.7E-15 1E-19 121.6 4.0 90 241-336 55-149 (167)
42 PRK13608 diacylglycerol glucos 99.5 3.7E-14 8.1E-19 132.3 5.9 110 241-361 256-371 (391)
43 TIGR03492 conserved hypothetic 99.5 1.9E-12 4.1E-17 120.4 15.5 88 243-339 281-372 (396)
44 COG3980 spsG Spore coat polysa 99.4 6.4E-12 1.4E-16 106.2 10.6 279 15-341 1-303 (318)
45 cd03823 GT1_ExpE7_like This fa 99.3 1E-09 2.2E-14 100.6 20.9 321 16-359 1-357 (359)
46 PLN02605 monogalactosyldiacylg 99.2 2.8E-11 6.1E-16 112.7 9.4 109 241-359 265-379 (382)
47 cd03814 GT1_like_2 This family 99.2 1.1E-09 2.5E-14 100.7 18.9 139 208-359 212-363 (364)
48 cd03800 GT1_Sucrose_synthase T 99.0 2.7E-08 5.9E-13 93.0 19.8 104 240-355 282-396 (398)
49 PLN02871 UDP-sulfoquinovose:DA 99.0 7.3E-09 1.6E-13 99.2 15.6 104 241-357 312-429 (465)
50 cd03808 GT1_cap1E_like This fa 99.0 4.1E-08 9E-13 89.6 20.0 306 16-354 1-356 (359)
51 cd03801 GT1_YqgM_like This fam 99.0 4.5E-08 9.8E-13 89.6 19.7 109 239-359 254-373 (374)
52 cd03794 GT1_wbuB_like This fam 99.0 4.5E-08 9.7E-13 90.6 18.8 87 240-338 274-372 (394)
53 cd04962 GT1_like_5 This family 99.0 8.6E-08 1.9E-12 88.9 20.7 110 240-361 252-370 (371)
54 PRK10307 putative glycosyl tra 99.0 1.2E-07 2.7E-12 89.3 20.8 112 241-362 284-408 (412)
55 cd03817 GT1_UGDG_like This fam 99.0 9.6E-08 2.1E-12 87.9 19.6 93 239-344 257-360 (374)
56 cd03798 GT1_wlbH_like This fam 98.8 5.1E-07 1.1E-11 82.9 19.2 111 239-361 257-376 (377)
57 cd03816 GT1_ALG1_like This fam 98.8 1.8E-06 3.8E-11 81.5 23.1 123 13-140 2-129 (415)
58 cd03825 GT1_wcfI_like This fam 98.8 1.6E-07 3.6E-12 86.6 15.7 111 239-361 242-364 (365)
59 cd03786 GT1_UDP-GlcNAc_2-Epime 98.8 6.9E-08 1.5E-12 89.4 13.1 102 241-359 258-362 (363)
60 PRK14089 ipid-A-disaccharide s 98.8 1.3E-07 2.8E-12 85.8 14.2 97 252-354 230-343 (347)
61 cd03820 GT1_amsD_like This fam 98.8 3.9E-07 8.5E-12 82.8 17.7 87 241-339 235-327 (348)
62 cd03805 GT1_ALG2_like This fam 98.8 1.8E-06 3.9E-11 80.7 21.7 83 239-334 278-367 (392)
63 PF04007 DUF354: Protein of un 98.8 5.7E-07 1.2E-11 81.1 17.2 305 15-361 1-332 (335)
64 PRK05749 3-deoxy-D-manno-octul 98.8 4E-07 8.7E-12 86.2 16.7 106 242-357 303-419 (425)
65 TIGR00236 wecB UDP-N-acetylglu 98.8 1.4E-07 3E-12 87.5 13.3 106 241-361 255-363 (365)
66 cd03818 GT1_ExpC_like This fam 98.8 9.5E-07 2.1E-11 82.9 19.0 103 240-354 280-393 (396)
67 cd03795 GT1_like_4 This family 98.7 1.8E-06 3.9E-11 79.4 19.4 90 239-338 242-339 (357)
68 cd03819 GT1_WavL_like This fam 98.7 3.2E-06 7E-11 77.7 20.2 283 24-343 9-347 (355)
69 TIGR03449 mycothiol_MshA UDP-N 98.7 5.7E-06 1.2E-10 77.8 21.2 109 240-361 282-401 (405)
70 cd03796 GT1_PIG-A_like This fa 98.6 2.1E-05 4.5E-10 73.9 22.2 108 240-361 249-367 (398)
71 cd03802 GT1_AviGT4_like This f 98.5 4.6E-06 9.9E-11 76.0 16.8 299 15-358 1-333 (335)
72 cd03821 GT1_Bme6_like This fam 98.5 6.4E-06 1.4E-10 75.7 17.9 102 240-355 261-373 (375)
73 cd03822 GT1_ecORF704_like This 98.5 3.3E-06 7.2E-11 77.6 15.6 107 239-359 245-365 (366)
74 cd03807 GT1_WbnK_like This fam 98.5 5.9E-06 1.3E-10 75.6 15.6 104 241-358 251-363 (365)
75 cd03799 GT1_amsK_like This is 98.5 1.4E-05 3E-10 73.4 17.9 83 239-333 234-329 (355)
76 cd03811 GT1_WabH_like This fam 98.4 6E-06 1.3E-10 75.0 14.9 88 240-339 245-340 (353)
77 TIGR02472 sucr_P_syn_N sucrose 98.4 8.5E-05 1.8E-09 70.7 22.8 108 240-359 316-438 (439)
78 COG0381 WecB UDP-N-acetylgluco 98.4 1.1E-05 2.4E-10 72.6 14.5 319 13-361 2-370 (383)
79 TIGR02468 sucrsPsyn_pln sucros 98.4 0.00025 5.4E-09 72.5 25.7 109 240-361 547-670 (1050)
80 cd04951 GT1_WbdM_like This fam 98.4 2.3E-05 5.1E-10 72.0 17.4 105 240-358 244-357 (360)
81 PRK09922 UDP-D-galactose:(gluc 98.3 1E-05 2.2E-10 74.9 13.3 83 239-333 234-326 (359)
82 PRK15179 Vi polysaccharide bio 98.3 0.0001 2.2E-09 73.2 20.5 110 240-359 573-691 (694)
83 cd04955 GT1_like_6 This family 98.3 4.5E-05 9.8E-10 70.2 17.2 105 239-359 246-362 (363)
84 TIGR03087 stp1 sugar transfera 98.2 2.6E-05 5.6E-10 73.2 14.3 107 240-360 279-395 (397)
85 TIGR03088 stp2 sugar transfera 98.2 0.00025 5.5E-09 65.8 20.7 109 241-361 255-372 (374)
86 cd03812 GT1_CapH_like This fam 98.2 3.4E-05 7.4E-10 71.0 14.4 90 239-341 247-341 (358)
87 PLN02275 transferase, transfer 98.1 0.0003 6.5E-09 65.4 18.8 75 241-329 286-371 (371)
88 COG1519 KdtA 3-deoxy-D-manno-o 98.1 0.00066 1.4E-08 61.9 19.6 107 242-360 301-416 (419)
89 PLN02846 digalactosyldiacylgly 98.0 0.00018 3.8E-09 68.0 14.5 134 208-360 243-390 (462)
90 KOG3349 Predicted glycosyltran 98.0 7.5E-06 1.6E-10 63.0 4.0 63 246-311 68-135 (170)
91 cd03792 GT1_Trehalose_phosphor 98.0 0.00047 1E-08 64.1 16.6 108 240-361 251-371 (372)
92 cd03809 GT1_mtfB_like This fam 97.9 0.00069 1.5E-08 62.1 16.8 88 239-340 251-345 (365)
93 PRK01021 lpxB lipid-A-disaccha 97.8 0.00014 3.1E-09 69.8 10.6 107 252-362 483-606 (608)
94 TIGR03568 NeuC_NnaA UDP-N-acet 97.8 0.00012 2.6E-09 67.7 9.8 81 241-338 262-345 (365)
95 PRK00654 glgA glycogen synthas 97.8 0.001 2.2E-08 63.8 15.3 115 239-361 335-462 (466)
96 PRK15427 colanic acid biosynth 97.7 0.00021 4.6E-09 67.2 10.0 111 239-361 277-405 (406)
97 PF00534 Glycos_transf_1: Glyc 97.7 0.00013 2.8E-09 59.7 7.2 92 239-342 71-169 (172)
98 PLN02316 synthase/transferase 97.7 0.0075 1.6E-07 62.2 20.7 113 240-360 899-1032(1036)
99 cd05844 GT1_like_7 Glycosyltra 97.7 0.0002 4.4E-09 66.1 8.7 105 239-355 243-364 (367)
100 PRK15484 lipopolysaccharide 1, 97.7 0.00039 8.5E-09 64.8 10.6 112 239-361 255-377 (380)
101 cd04946 GT1_AmsK_like This fam 97.6 0.00033 7.2E-09 66.0 8.9 108 240-356 288-406 (407)
102 cd03791 GT1_Glycogen_synthase_ 97.5 0.024 5.1E-07 54.6 21.2 112 240-359 350-474 (476)
103 cd01635 Glycosyltransferase_GT 97.5 0.00099 2.1E-08 56.6 10.1 49 239-289 159-215 (229)
104 PF02684 LpxB: Lipid-A-disacch 97.4 0.0014 2.9E-08 60.3 10.2 83 251-337 254-346 (373)
105 cd03806 GT1_ALG11_like This fa 97.3 0.032 6.8E-07 52.8 18.6 81 239-332 303-393 (419)
106 cd03804 GT1_wbaZ_like This fam 97.2 0.00048 1E-08 63.4 4.8 124 208-342 210-338 (351)
107 COG0763 LpxB Lipid A disacchar 97.1 0.0079 1.7E-07 54.5 11.9 104 253-360 260-380 (381)
108 COG1817 Uncharacterized protei 97.1 0.046 9.9E-07 48.0 15.4 103 24-142 9-114 (346)
109 cd03813 GT1_like_3 This family 97.1 0.004 8.7E-08 59.9 10.0 107 240-357 353-472 (475)
110 PF13477 Glyco_trans_4_2: Glyc 96.9 0.016 3.4E-07 45.4 10.8 103 16-140 1-107 (139)
111 TIGR02149 glgA_Coryne glycogen 96.9 0.0053 1.1E-07 57.2 9.2 108 247-361 267-386 (388)
112 cd04949 GT1_gtfA_like This fam 96.6 0.0069 1.5E-07 56.2 7.3 85 240-333 260-347 (372)
113 PF13692 Glyco_trans_1_4: Glyc 96.5 0.0024 5.3E-08 49.8 3.5 80 240-331 52-135 (135)
114 cd04950 GT1_like_1 Glycosyltra 96.5 0.02 4.4E-07 53.2 9.7 107 240-361 253-371 (373)
115 PRK09814 beta-1,6-galactofuran 96.5 0.017 3.7E-07 52.8 9.0 106 239-357 205-331 (333)
116 COG5017 Uncharacterized conser 96.5 0.0071 1.5E-07 46.1 5.2 55 253-310 61-123 (161)
117 PF13524 Glyco_trans_1_2: Glyc 96.4 0.027 5.9E-07 40.6 8.3 79 266-356 9-91 (92)
118 COG4370 Uncharacterized protei 96.4 0.017 3.8E-07 50.3 7.9 94 240-341 293-389 (412)
119 PF13844 Glyco_transf_41: Glyc 96.4 0.018 3.9E-07 54.3 8.7 90 241-339 342-438 (468)
120 TIGR02470 sucr_synth sucrose s 96.2 0.17 3.7E-06 51.1 15.0 85 240-336 618-718 (784)
121 PF02350 Epimerase_2: UDP-N-ac 96.2 0.0044 9.6E-08 56.8 3.6 104 241-359 239-345 (346)
122 TIGR02918 accessory Sec system 95.8 0.063 1.4E-06 51.9 9.8 114 240-360 375-498 (500)
123 PF13579 Glyco_trans_4_4: Glyc 95.8 0.014 3.1E-07 46.4 4.6 93 30-140 6-104 (160)
124 PLN00142 sucrose synthase 95.7 0.16 3.6E-06 51.3 12.1 90 258-359 667-768 (815)
125 PHA01633 putative glycosyl tra 95.3 0.11 2.5E-06 47.2 8.9 84 239-330 199-306 (335)
126 PLN02949 transferase, transfer 95.1 0.089 1.9E-06 50.4 8.1 110 239-361 333-456 (463)
127 PRK15490 Vi polysaccharide bio 95.1 0.15 3.2E-06 49.4 9.2 110 240-361 454-575 (578)
128 PRK14098 glycogen synthase; Pr 94.9 0.13 2.7E-06 49.8 8.4 114 238-361 359-485 (489)
129 PF13439 Glyco_transf_4: Glyco 94.6 0.24 5.3E-06 39.9 8.4 100 24-142 11-111 (177)
130 COG1618 Predicted nucleotide k 94.5 0.43 9.3E-06 38.1 8.9 102 12-121 3-110 (179)
131 TIGR00715 precor6x_red precorr 94.3 0.36 7.8E-06 42.2 9.0 90 15-138 1-98 (256)
132 PF01975 SurE: Survival protei 94.3 0.21 4.5E-06 41.7 7.2 119 15-142 1-135 (196)
133 PRK10017 colanic acid biosynth 94.0 0.24 5.2E-06 46.8 8.0 97 253-359 323-422 (426)
134 PHA01630 putative group 1 glyc 94.0 0.12 2.6E-06 47.2 5.9 104 249-361 198-330 (331)
135 TIGR02095 glgA glycogen/starch 93.8 0.31 6.8E-06 46.9 8.6 114 239-360 344-471 (473)
136 PF12000 Glyco_trans_4_3: Gkyc 93.6 0.98 2.1E-05 36.7 9.8 91 40-140 1-96 (171)
137 PF08660 Alg14: Oligosaccharid 93.0 1.1 2.3E-05 36.5 9.2 113 19-140 2-129 (170)
138 PLN02501 digalactosyldiacylgly 91.2 0.77 1.7E-05 45.6 7.3 132 209-357 562-705 (794)
139 TIGR02095 glgA glycogen/starch 91.0 3.9 8.4E-05 39.4 12.2 38 15-52 1-44 (473)
140 PLN00142 sucrose synthase 91.0 1.4 3E-05 44.9 9.2 106 34-140 320-439 (815)
141 PRK13932 stationary phase surv 90.6 8 0.00017 33.8 12.3 116 12-140 3-133 (257)
142 PRK02261 methylaspartate mutas 90.5 0.63 1.4E-05 36.4 5.1 56 13-73 2-61 (137)
143 TIGR02470 sucr_synth sucrose s 90.3 1.7 3.7E-05 44.1 9.1 121 14-138 255-414 (784)
144 PF02951 GSH-S_N: Prokaryotic 90.3 0.56 1.2E-05 35.6 4.4 40 15-54 1-43 (119)
145 TIGR03713 acc_sec_asp1 accesso 90.1 0.54 1.2E-05 45.7 5.4 75 241-332 409-489 (519)
146 PF02441 Flavoprotein: Flavopr 88.9 0.47 1E-05 36.7 3.3 44 15-59 1-44 (129)
147 PLN02939 transferase, transfer 88.9 3 6.5E-05 43.2 9.7 112 240-359 836-964 (977)
148 cd02067 B12-binding B12 bindin 88.3 0.77 1.7E-05 34.8 4.1 36 16-51 1-36 (119)
149 TIGR02400 trehalose_OtsA alpha 87.9 2.4 5.2E-05 40.6 8.0 99 247-360 342-455 (456)
150 PRK10125 putative glycosyl tra 86.8 2.9 6.2E-05 39.4 7.8 96 252-360 301-403 (405)
151 PF02571 CbiJ: Precorrin-6x re 86.5 3.2 6.9E-05 36.1 7.3 93 15-139 1-100 (249)
152 KOG4626 O-linked N-acetylgluco 86.1 0.91 2E-05 44.0 3.9 76 255-338 835-911 (966)
153 TIGR02919 accessory Sec system 85.8 1.6 3.4E-05 41.5 5.4 90 241-342 328-423 (438)
154 PRK08057 cobalt-precorrin-6x r 85.6 11 0.00025 32.7 10.2 91 14-139 2-99 (248)
155 COG0003 ArsA Predicted ATPase 85.6 9.5 0.00021 34.6 10.0 40 14-53 1-41 (322)
156 PRK13934 stationary phase surv 84.8 24 0.00052 31.0 11.8 112 15-140 1-127 (266)
157 COG0496 SurE Predicted acid ph 84.8 19 0.00041 31.2 11.0 113 15-141 1-126 (252)
158 PRK13933 stationary phase surv 84.4 27 0.00059 30.5 12.1 115 15-140 1-129 (253)
159 TIGR02015 BchY chlorophyllide 83.9 4.2 9.2E-05 38.5 7.4 90 16-139 287-380 (422)
160 COG4088 Predicted nucleotide k 83.9 23 0.00049 29.9 10.5 110 14-148 1-116 (261)
161 PRK05973 replicative DNA helic 83.2 4 8.7E-05 35.2 6.4 43 16-58 66-108 (237)
162 PRK10916 ADP-heptose:LPS hepto 83.0 9.6 0.00021 35.0 9.3 103 15-137 1-106 (348)
163 PF04413 Glycos_transf_N: 3-De 82.5 1.4 3E-05 36.5 3.2 99 17-141 24-127 (186)
164 cd05844 GT1_like_7 Glycosyltra 82.4 14 0.00031 33.6 10.4 38 101-139 73-112 (367)
165 PLN03063 alpha,alpha-trehalose 82.4 6.3 0.00014 40.7 8.4 94 253-361 371-477 (797)
166 TIGR01285 nifN nitrogenase mol 82.4 11 0.00023 35.9 9.5 87 14-138 311-397 (432)
167 smart00851 MGS MGS-like domain 82.1 6.8 0.00015 27.9 6.4 79 31-136 2-89 (90)
168 PF02142 MGS: MGS-like domain 81.8 1.6 3.5E-05 31.6 3.0 84 31-136 2-94 (95)
169 PRK07313 phosphopantothenoylcy 81.6 1.7 3.6E-05 35.9 3.3 45 14-59 1-45 (182)
170 PRK10422 lipopolysaccharide co 81.3 19 0.00041 33.1 10.6 49 11-59 2-52 (352)
171 PF12146 Hydrolase_4: Putative 81.1 4.6 9.9E-05 28.1 5.0 35 14-48 15-49 (79)
172 cd01980 Chlide_reductase_Y Chl 80.9 6.8 0.00015 37.0 7.6 95 16-140 282-376 (416)
173 PRK05647 purN phosphoribosylgl 80.7 9.5 0.00021 32.0 7.6 83 14-120 1-89 (200)
174 PRK08305 spoVFB dipicolinate s 79.5 2.2 4.7E-05 35.5 3.3 46 13-58 4-49 (196)
175 COG0438 RfaG Glycosyltransfera 79.4 18 0.0004 31.9 9.9 82 241-334 257-345 (381)
176 PF02310 B12-binding: B12 bind 78.4 5.9 0.00013 29.8 5.3 37 15-51 1-37 (121)
177 cd03788 GT1_TPS Trehalose-6-Ph 77.7 6.1 0.00013 37.9 6.3 98 246-359 346-459 (460)
178 PRK06029 3-octaprenyl-4-hydrox 77.6 2.3 5E-05 35.1 3.0 45 14-59 1-46 (185)
179 KOG2941 Beta-1,4-mannosyltrans 77.6 57 0.0012 29.8 13.1 126 10-145 8-142 (444)
180 cd01965 Nitrogenase_MoFe_beta_ 77.5 7.9 0.00017 36.8 6.9 99 13-139 298-396 (428)
181 TIGR02149 glgA_Coryne glycogen 77.4 26 0.00056 32.3 10.4 45 263-309 262-308 (388)
182 PRK13935 stationary phase surv 77.4 48 0.0011 28.9 11.9 113 15-140 1-128 (253)
183 PRK14099 glycogen synthase; Pr 77.4 9.1 0.0002 37.0 7.4 113 240-360 349-477 (485)
184 cd01974 Nitrogenase_MoFe_beta 77.2 24 0.00052 33.6 10.1 99 13-139 302-402 (435)
185 cd02070 corrinoid_protein_B12- 77.1 4.1 8.8E-05 34.2 4.4 56 13-73 81-140 (201)
186 TIGR00087 surE 5'/3'-nucleotid 77.1 34 0.00073 29.7 10.0 113 15-140 1-128 (244)
187 PRK14098 glycogen synthase; Pr 76.5 4.6 0.0001 39.1 5.1 40 12-51 3-48 (489)
188 PRK06732 phosphopantothenate-- 76.2 6.7 0.00015 33.7 5.6 31 19-51 19-49 (229)
189 cd02071 MM_CoA_mut_B12_BD meth 76.2 4.9 0.00011 30.6 4.2 36 16-51 1-36 (122)
190 COG2099 CobK Precorrin-6x redu 76.2 30 0.00064 30.0 9.2 91 14-138 2-99 (257)
191 cd01424 MGS_CPS_II Methylglyox 76.0 15 0.00033 27.2 6.8 84 26-137 10-100 (110)
192 TIGR02370 pyl_corrinoid methyl 76.0 6 0.00013 33.1 5.1 56 13-73 83-142 (197)
193 PRK02797 4-alpha-L-fucosyltran 75.7 6.7 0.00015 35.0 5.4 80 241-328 206-291 (322)
194 PF04127 DFP: DNA / pantothena 75.4 2.8 6.2E-05 34.6 2.9 31 20-52 23-53 (185)
195 KOG1111 N-acetylglucosaminyltr 75.1 21 0.00046 32.6 8.3 45 239-285 250-301 (426)
196 cd01423 MGS_CPS_I_III Methylgl 74.5 23 0.00051 26.5 7.6 85 27-137 11-106 (116)
197 cd03793 GT1_Glycogen_synthase_ 74.4 15 0.00033 36.1 7.8 77 251-332 468-553 (590)
198 PRK13789 phosphoribosylamine-- 74.0 13 0.00028 35.3 7.4 91 13-136 3-96 (426)
199 PF06925 MGDG_synth: Monogalac 73.5 15 0.00032 29.8 6.7 51 91-142 70-126 (169)
200 PRK05920 aromatic acid decarbo 73.5 3.7 8E-05 34.5 3.2 44 14-58 3-46 (204)
201 COG2185 Sbm Methylmalonyl-CoA 73.4 6.2 0.00013 30.9 4.1 39 12-50 10-48 (143)
202 COG1484 DnaC DNA replication p 73.3 4.4 9.5E-05 35.4 3.7 47 13-59 104-150 (254)
203 PRK00346 surE 5'(3')-nucleotid 72.7 64 0.0014 28.1 12.1 111 15-140 1-124 (250)
204 PF04464 Glyphos_transf: CDP-G 72.5 5.4 0.00012 36.9 4.4 93 240-341 251-347 (369)
205 COG3914 Spy Predicted O-linked 72.5 9.7 0.00021 36.9 5.9 65 251-325 502-572 (620)
206 PRK14099 glycogen synthase; Pr 72.2 6.6 0.00014 38.0 5.0 39 13-51 2-46 (485)
207 PRK06849 hypothetical protein; 71.6 8.4 0.00018 36.0 5.5 37 12-52 2-38 (389)
208 cd01425 RPS2 Ribosomal protein 70.6 15 0.00033 30.5 6.2 111 29-142 43-160 (193)
209 PRK13982 bifunctional SbtC-lik 70.3 11 0.00023 36.2 5.8 41 13-53 255-307 (475)
210 PF06506 PrpR_N: Propionate ca 70.1 33 0.00071 28.0 8.1 112 25-144 16-155 (176)
211 cd00532 MGS-like MGS-like doma 70.0 18 0.0004 27.0 6.0 84 27-137 10-104 (112)
212 TIGR02853 spore_dpaA dipicolin 69.7 13 0.00028 33.1 6.0 99 29-136 11-117 (287)
213 PF08433 KTI12: Chromatin asso 69.4 70 0.0015 28.2 10.4 107 15-149 2-114 (270)
214 PRK10867 signal recognition pa 69.2 36 0.00079 32.3 9.0 43 14-56 100-143 (433)
215 PRK04885 ppnK inorganic polyph 69.0 7.9 0.00017 34.0 4.4 53 257-331 35-93 (265)
216 cd02069 methionine_synthase_B1 68.8 11 0.00023 32.0 5.0 56 13-73 87-146 (213)
217 PRK06988 putative formyltransf 68.6 14 0.00031 33.3 6.1 33 14-51 2-34 (312)
218 TIGR02195 heptsyl_trn_II lipop 68.6 28 0.00061 31.6 8.2 101 16-136 1-104 (334)
219 PF06258 Mito_fiss_Elm1: Mitoc 68.5 18 0.00039 32.7 6.7 57 250-309 221-281 (311)
220 COG1066 Sms Predicted ATP-depe 68.3 4.5 9.7E-05 37.6 2.7 41 17-58 96-136 (456)
221 PF10649 DUF2478: Protein of u 68.3 61 0.0013 26.0 13.0 120 18-144 2-135 (159)
222 cd00561 CobA_CobO_BtuR ATP:cor 67.8 62 0.0014 26.0 9.9 97 16-122 4-106 (159)
223 PF02374 ArsA_ATPase: Anion-tr 67.6 7.5 0.00016 35.0 4.0 40 15-54 1-41 (305)
224 PRK11519 tyrosine kinase; Prov 67.3 1.4E+02 0.003 30.7 13.4 40 12-51 523-564 (719)
225 PRK10964 ADP-heptose:LPS hepto 67.1 6.3 0.00014 35.7 3.6 45 15-59 1-47 (322)
226 PRK11199 tyrA bifunctional cho 67.0 46 0.001 31.0 9.3 34 13-51 97-131 (374)
227 TIGR02852 spore_dpaB dipicolin 66.6 7.5 0.00016 32.1 3.5 41 15-55 1-41 (187)
228 KOG0853 Glycosyltransferase [C 66.5 8.3 0.00018 36.9 4.2 82 271-360 381-466 (495)
229 cd03466 Nitrogenase_NifN_2 Nit 66.4 22 0.00047 33.8 7.1 34 101-138 363-396 (429)
230 PF10820 DUF2543: Protein of u 66.1 20 0.00042 23.9 4.6 41 321-361 36-77 (81)
231 TIGR01283 nifE nitrogenase mol 65.9 82 0.0018 30.2 11.0 90 14-138 326-419 (456)
232 PRK14077 pnk inorganic polypho 65.7 10 0.00022 33.8 4.4 57 254-332 61-121 (287)
233 COG0052 RpsB Ribosomal protein 65.6 29 0.00063 29.9 6.8 32 111-142 156-189 (252)
234 PF07429 Glyco_transf_56: 4-al 65.5 12 0.00026 34.0 4.8 82 241-330 245-332 (360)
235 cd01421 IMPCH Inosine monophos 65.4 16 0.00035 30.1 5.2 82 29-120 11-100 (187)
236 PRK00771 signal recognition pa 65.3 42 0.0009 32.0 8.6 43 13-55 94-136 (437)
237 TIGR02655 circ_KaiC circadian 64.3 22 0.00047 34.4 6.8 45 15-59 264-308 (484)
238 PF02844 GARS_N: Phosphoribosy 64.3 26 0.00056 25.7 5.5 86 15-137 1-91 (100)
239 PRK02155 ppnK NAD(+)/NADH kina 63.9 12 0.00026 33.5 4.5 55 255-331 61-119 (291)
240 PRK14478 nitrogenase molybdenu 63.7 79 0.0017 30.5 10.4 89 14-137 324-416 (475)
241 PRK06249 2-dehydropantoate 2-r 63.5 11 0.00024 34.0 4.4 49 12-71 3-51 (313)
242 PRK01911 ppnK inorganic polyph 63.4 12 0.00026 33.5 4.4 57 254-332 61-121 (292)
243 cd01968 Nitrogenase_NifE_I Nit 62.9 40 0.00087 31.8 8.2 89 14-137 287-379 (410)
244 cd00550 ArsA_ATPase Oxyanion-t 62.7 33 0.00071 29.9 7.1 36 18-53 4-39 (254)
245 TIGR03878 thermo_KaiC_2 KaiC d 61.8 35 0.00075 29.9 7.1 38 15-52 37-74 (259)
246 PRK09620 hypothetical protein; 61.8 16 0.00036 31.3 4.9 22 31-52 32-53 (229)
247 PF09001 DUF1890: Domain of un 61.8 5.8 0.00013 30.6 1.8 35 24-58 9-43 (139)
248 COG4394 Uncharacterized protei 61.5 46 0.001 29.4 7.4 109 242-363 239-369 (370)
249 PF06506 PrpR_N: Propionate ca 60.9 7.5 0.00016 31.8 2.6 69 256-331 33-124 (176)
250 PLN02939 transferase, transfer 60.5 18 0.00039 37.8 5.6 42 11-52 478-525 (977)
251 TIGR00355 purH phosphoribosyla 60.4 21 0.00045 34.3 5.6 83 29-120 11-100 (511)
252 TIGR02113 coaC_strep phosphopa 60.4 9.9 0.00021 31.2 3.1 43 16-59 2-44 (177)
253 TIGR02201 heptsyl_trn_III lipo 60.1 82 0.0018 28.7 9.6 105 16-137 1-108 (344)
254 PRK13768 GTPase; Provisional 59.9 66 0.0014 28.0 8.5 39 15-53 3-41 (253)
255 PRK02649 ppnK inorganic polyph 59.9 14 0.00029 33.3 4.2 55 256-332 67-125 (305)
256 TIGR02398 gluc_glyc_Psyn gluco 59.5 56 0.0012 31.6 8.5 106 243-363 364-484 (487)
257 TIGR00421 ubiX_pad polyprenyl 59.4 7.3 0.00016 32.1 2.2 42 16-58 1-42 (181)
258 KOG3339 Predicted glycosyltran 59.4 74 0.0016 26.2 7.7 25 17-41 40-64 (211)
259 COG1703 ArgK Putative periplas 59.3 24 0.00052 31.5 5.4 50 7-56 44-93 (323)
260 PRK07206 hypothetical protein; 59.2 44 0.00095 31.5 7.8 33 15-52 3-35 (416)
261 PF05159 Capsule_synth: Capsul 59.2 8.2 0.00018 34.0 2.7 42 243-287 185-226 (269)
262 PRK04539 ppnK inorganic polyph 59.0 14 0.0003 33.1 4.1 57 254-332 65-125 (296)
263 PRK13196 pyrrolidone-carboxyla 58.6 33 0.00073 29.0 6.1 69 14-121 1-71 (211)
264 cd03789 GT1_LPS_heptosyltransf 58.6 1E+02 0.0022 27.1 9.6 44 16-59 1-46 (279)
265 PRK14477 bifunctional nitrogen 58.0 1.1E+02 0.0023 32.5 10.8 92 13-139 319-414 (917)
266 COG1797 CobB Cobyrinic acid a, 57.7 13 0.00029 34.8 3.8 34 21-54 8-42 (451)
267 TIGR03880 KaiC_arch_3 KaiC dom 57.6 22 0.00047 30.2 5.0 102 15-122 17-118 (224)
268 COG0287 TyrA Prephenate dehydr 57.3 97 0.0021 27.5 9.0 41 13-58 2-42 (279)
269 TIGR00347 bioD dethiobiotin sy 57.2 60 0.0013 25.9 7.3 28 21-48 5-32 (166)
270 PRK04328 hypothetical protein; 57.0 1.2E+02 0.0026 26.3 9.6 44 14-57 23-66 (249)
271 PF07355 GRDB: Glycine/sarcosi 57.0 30 0.00065 31.5 5.8 40 98-138 68-117 (349)
272 PRK03372 ppnK inorganic polyph 56.9 15 0.00033 33.0 4.0 56 255-332 70-129 (306)
273 COG2085 Predicted dinucleotide 56.8 18 0.00039 30.4 4.1 34 14-52 1-34 (211)
274 PRK12743 oxidoreductase; Provi 56.8 78 0.0017 27.2 8.5 33 15-50 2-34 (256)
275 PRK00881 purH bifunctional pho 56.6 31 0.00066 33.3 6.1 94 15-120 5-105 (513)
276 COG0223 Fmt Methionyl-tRNA for 56.6 50 0.0011 29.7 7.1 33 14-51 1-33 (307)
277 PF09314 DUF1972: Domain of un 56.2 1.2E+02 0.0025 25.2 11.1 57 14-73 1-62 (185)
278 KOG4479 Transcription factor e 55.9 19 0.00041 24.8 3.3 29 333-361 36-64 (92)
279 PF08323 Glyco_transf_5: Starc 55.9 16 0.00036 31.6 4.0 36 16-51 1-42 (245)
280 PRK12921 2-dehydropantoate 2-r 55.9 14 0.0003 33.1 3.6 40 15-59 1-40 (305)
281 TIGR02700 flavo_MJ0208 archaeo 55.8 15 0.00032 31.7 3.6 43 17-59 2-46 (234)
282 PF01695 IstB_IS21: IstB-like 55.8 13 0.00029 30.4 3.2 47 13-59 46-92 (178)
283 PLN02929 NADH kinase 55.6 17 0.00037 32.5 4.0 68 255-332 62-138 (301)
284 PRK03378 ppnK inorganic polyph 55.6 19 0.00041 32.2 4.4 56 254-331 60-119 (292)
285 PRK12815 carB carbamoyl phosph 55.5 1.1E+02 0.0024 33.0 10.7 45 8-52 1-51 (1068)
286 COG0541 Ffh Signal recognition 55.5 51 0.0011 31.1 7.1 47 11-57 97-143 (451)
287 PRK13011 formyltetrahydrofolat 55.3 1.2E+02 0.0027 26.9 9.4 87 10-121 85-175 (286)
288 TIGR02193 heptsyl_trn_I lipopo 55.2 13 0.00028 33.5 3.4 44 16-59 1-46 (319)
289 TIGR01501 MthylAspMutase methy 55.1 22 0.00049 27.6 4.1 54 15-73 2-59 (134)
290 PRK05579 bifunctional phosphop 55.1 15 0.00033 34.5 3.8 46 13-59 5-50 (399)
291 COG1748 LYS9 Saccharopine dehy 54.8 58 0.0013 30.4 7.4 53 14-73 1-55 (389)
292 TIGR00416 sms DNA repair prote 54.8 27 0.00058 33.5 5.5 41 17-57 97-137 (454)
293 KOG3062 RNA polymerase II elon 54.4 30 0.00065 29.5 4.9 31 14-44 1-31 (281)
294 PRK06179 short chain dehydroge 54.1 1.4E+02 0.0031 25.8 9.8 32 17-51 6-37 (270)
295 PF07015 VirC1: VirC1 protein; 53.7 38 0.00081 29.1 5.6 40 17-56 4-44 (231)
296 PRK14476 nitrogenase molybdenu 53.7 98 0.0021 29.7 9.1 85 14-138 311-395 (455)
297 cd01121 Sms Sms (bacterial rad 53.5 19 0.0004 33.5 4.1 41 17-57 85-125 (372)
298 PLN02891 IMP cyclohydrolase 53.5 53 0.0012 31.8 7.0 100 9-120 17-123 (547)
299 PRK05595 replicative DNA helic 53.2 54 0.0012 31.3 7.3 41 17-57 204-245 (444)
300 PRK03359 putative electron tra 53.2 36 0.00078 29.8 5.6 95 31-141 41-148 (256)
301 PRK11823 DNA repair protein Ra 53.2 20 0.00044 34.2 4.4 42 16-57 82-123 (446)
302 PRK01185 ppnK inorganic polyph 53.1 21 0.00046 31.5 4.2 54 257-332 52-106 (271)
303 PF00862 Sucrose_synth: Sucros 53.0 25 0.00054 33.8 4.8 112 25-141 296-433 (550)
304 PRK05784 phosphoribosylamine-- 53.0 64 0.0014 31.3 7.8 34 15-53 1-36 (486)
305 COG0859 RfaF ADP-heptose:LPS h 52.9 84 0.0018 28.7 8.3 108 14-140 1-110 (334)
306 PF01210 NAD_Gly3P_dh_N: NAD-d 52.9 8.2 0.00018 30.8 1.5 32 16-52 1-32 (157)
307 cd01124 KaiC KaiC is a circadi 52.6 20 0.00044 29.2 3.9 41 17-57 2-42 (187)
308 PRK13931 stationary phase surv 52.6 1.6E+02 0.0035 25.8 10.0 98 31-140 16-129 (261)
309 PRK08506 replicative DNA helic 52.4 70 0.0015 30.9 8.0 42 16-57 194-235 (472)
310 TIGR00708 cobA cob(I)alamin ad 52.1 1.3E+02 0.0028 24.6 10.2 95 16-121 7-107 (173)
311 PRK06027 purU formyltetrahydro 51.9 66 0.0014 28.7 7.2 89 8-121 83-175 (286)
312 COG4081 Uncharacterized protei 51.9 31 0.00066 26.4 4.2 37 22-58 12-48 (148)
313 TIGR00521 coaBC_dfp phosphopan 51.9 14 0.00029 34.7 2.9 44 14-58 3-46 (390)
314 TIGR00959 ffh signal recogniti 51.8 97 0.0021 29.5 8.6 43 14-56 99-142 (428)
315 PF03853 YjeF_N: YjeF-related 51.6 30 0.00066 28.0 4.7 37 12-49 23-59 (169)
316 CHL00072 chlL photochlorophyll 51.3 30 0.00064 30.9 5.0 36 15-50 1-36 (290)
317 PRK06522 2-dehydropantoate 2-r 51.3 12 0.00027 33.3 2.6 39 15-58 1-40 (304)
318 PLN02935 Bifunctional NADH kin 51.3 23 0.00049 34.1 4.3 54 256-332 261-319 (508)
319 PRK02231 ppnK inorganic polyph 51.1 17 0.00037 32.1 3.3 57 252-330 37-97 (272)
320 TIGR02699 archaeo_AfpA archaeo 50.9 15 0.00033 30.0 2.7 41 17-58 2-44 (174)
321 PRK14501 putative bifunctional 50.9 36 0.00078 34.9 6.0 103 245-361 346-462 (726)
322 COG0143 MetG Methionyl-tRNA sy 50.8 32 0.00069 33.8 5.3 38 14-51 4-51 (558)
323 PRK12342 hypothetical protein; 50.4 43 0.00092 29.3 5.6 95 31-141 40-145 (254)
324 cd02065 B12-binding_like B12 b 50.3 30 0.00065 26.0 4.3 35 17-51 2-36 (125)
325 COG0240 GpsA Glycerol-3-phosph 50.2 31 0.00068 31.2 4.8 41 14-59 1-42 (329)
326 PRK08229 2-dehydropantoate 2-r 50.1 14 0.0003 33.8 2.7 40 14-58 2-41 (341)
327 cd00861 ProRS_anticodon_short 49.9 41 0.00088 23.7 4.7 56 15-72 2-60 (94)
328 PF02350 Epimerase_2: UDP-N-ac 49.7 22 0.00047 32.7 3.9 41 99-140 56-99 (346)
329 PRK14075 pnk inorganic polypho 49.7 27 0.00058 30.6 4.3 54 256-331 40-94 (256)
330 PRK06067 flagellar accessory p 49.6 25 0.00054 30.1 4.1 43 14-56 25-67 (234)
331 PRK03501 ppnK inorganic polyph 49.5 25 0.00055 30.9 4.1 56 256-332 38-98 (264)
332 TIGR00640 acid_CoA_mut_C methy 49.3 37 0.0008 26.3 4.6 56 13-73 1-60 (132)
333 PRK01231 ppnK inorganic polyph 49.0 28 0.0006 31.2 4.4 55 256-332 61-119 (295)
334 PF03446 NAD_binding_2: NAD bi 48.8 18 0.00039 29.1 2.9 31 14-49 1-31 (163)
335 PRK06321 replicative DNA helic 48.4 1.4E+02 0.003 28.9 9.2 40 17-56 229-269 (472)
336 cd01452 VWA_26S_proteasome_sub 48.1 71 0.0015 26.4 6.3 60 15-74 108-174 (187)
337 PF04493 Endonuclease_5: Endon 48.1 35 0.00076 28.7 4.6 42 101-142 78-127 (206)
338 cd02034 CooC The accessory pro 47.9 46 0.00099 25.0 4.8 37 16-52 1-37 (116)
339 PLN02501 digalactosyldiacylgly 47.6 1.2E+02 0.0025 31.0 8.6 38 101-140 425-467 (794)
340 TIGR03575 selen_PSTK_euk L-ser 47.6 2.3E+02 0.0049 26.0 11.2 38 17-54 2-40 (340)
341 PRK12311 rpsB 30S ribosomal pr 47.4 59 0.0013 29.6 6.1 32 111-142 152-185 (326)
342 cd02032 Bchl_like This family 47.2 34 0.00074 29.9 4.7 35 15-49 1-35 (267)
343 TIGR01007 eps_fam capsular exo 47.2 42 0.00091 27.9 5.0 37 15-51 17-55 (204)
344 PRK03767 NAD(P)H:quinone oxido 47.1 40 0.00086 28.1 4.8 38 14-51 1-40 (200)
345 COG3349 Uncharacterized conser 46.9 20 0.00044 34.3 3.3 32 15-51 1-32 (485)
346 PRK12481 2-deoxy-D-gluconate 3 46.9 1.2E+02 0.0027 26.0 8.1 32 16-50 9-40 (251)
347 PF02606 LpxK: Tetraacyldisacc 46.6 1.5E+02 0.0033 27.0 8.8 38 17-54 40-77 (326)
348 PRK09165 replicative DNA helic 46.6 79 0.0017 30.8 7.3 41 17-57 220-275 (497)
349 cd06559 Endonuclease_V Endonuc 46.5 26 0.00057 29.5 3.6 41 102-142 83-131 (208)
350 TIGR01281 DPOR_bchL light-inde 46.4 36 0.00079 29.8 4.7 34 15-48 1-34 (268)
351 PLN02949 transferase, transfer 46.2 2.8E+02 0.0061 26.7 12.5 124 12-142 31-170 (463)
352 COG1087 GalE UDP-glucose 4-epi 45.9 65 0.0014 28.9 5.9 88 15-137 1-90 (329)
353 PRK13236 nitrogenase reductase 45.8 45 0.00098 29.8 5.3 38 12-49 3-41 (296)
354 KOG0081 GTPase Rab27, small G 45.5 48 0.001 26.5 4.6 42 101-142 108-165 (219)
355 PF05728 UPF0227: Uncharacteri 45.5 52 0.0011 27.2 5.2 42 101-143 48-92 (187)
356 TIGR01918 various_sel_PB selen 45.4 56 0.0012 30.7 5.7 42 96-138 62-113 (431)
357 PRK13194 pyrrolidone-carboxyla 45.4 72 0.0016 26.9 6.0 26 15-40 1-28 (208)
358 TIGR01917 gly_red_sel_B glycin 45.3 56 0.0012 30.7 5.7 43 95-138 61-113 (431)
359 PRK06395 phosphoribosylamine-- 45.3 1.7E+02 0.0037 27.9 9.3 33 14-51 2-34 (435)
360 KOG0832 Mitochondrial/chloropl 45.2 4.3 9.3E-05 34.2 -1.2 114 23-142 89-206 (251)
361 TIGR01861 ANFD nitrogenase iro 45.2 1.2E+02 0.0027 29.5 8.4 89 14-138 328-422 (513)
362 PRK04148 hypothetical protein; 45.1 53 0.0012 25.5 4.8 40 13-58 16-56 (134)
363 PF02585 PIG-L: GlcNAc-PI de-N 45.1 1.3E+02 0.0028 22.7 7.1 22 96-118 86-107 (128)
364 PRK13982 bifunctional SbtC-lik 44.9 23 0.0005 34.0 3.3 45 14-59 70-114 (475)
365 TIGR00639 PurN phosphoribosylg 44.9 1.8E+02 0.0039 24.1 8.6 81 15-120 1-88 (190)
366 PF02702 KdpD: Osmosensitive K 44.7 41 0.00089 28.2 4.3 40 12-51 3-42 (211)
367 TIGR03446 mycothiol_Mca mycoth 44.7 1.2E+02 0.0026 27.0 7.6 19 98-117 109-127 (283)
368 PRK08760 replicative DNA helic 44.6 69 0.0015 30.9 6.6 41 17-57 232-273 (476)
369 PF01470 Peptidase_C15: Pyrogl 43.9 76 0.0016 26.6 6.0 26 15-40 1-28 (202)
370 PRK03708 ppnK inorganic polyph 43.6 29 0.00063 30.8 3.6 53 257-331 57-112 (277)
371 PF10087 DUF2325: Uncharacteri 43.3 79 0.0017 22.7 5.3 34 111-144 48-87 (97)
372 TIGR01380 glut_syn glutathione 43.2 45 0.00097 30.1 4.9 42 15-56 1-45 (312)
373 cd08783 Death_MALT1 Death doma 43.1 1.3E+02 0.0027 21.8 6.3 51 289-346 20-72 (97)
374 KOG0780 Signal recognition par 42.9 1.4E+02 0.003 27.9 7.7 59 13-71 100-161 (483)
375 PRK05986 cob(I)alamin adenolsy 42.8 2E+02 0.0043 24.0 10.2 99 14-122 22-126 (191)
376 PF00282 Pyridoxal_deC: Pyrido 42.8 51 0.0011 30.7 5.2 69 261-331 105-191 (373)
377 PF05225 HTH_psq: helix-turn-h 42.7 40 0.00086 20.5 3.1 24 317-340 1-25 (45)
378 COG2861 Uncharacterized protei 42.5 1.6E+02 0.0034 25.5 7.5 39 99-137 137-178 (250)
379 TIGR02195 heptsyl_trn_II lipop 42.3 1.8E+02 0.004 26.2 8.9 101 15-142 175-280 (334)
380 PRK06947 glucose-1-dehydrogena 42.3 1.7E+02 0.0037 24.8 8.3 33 14-49 1-33 (248)
381 CHL00076 chlB photochlorophyll 42.2 42 0.00092 32.7 4.8 34 102-139 366-399 (513)
382 PRK13869 plasmid-partitioning 42.0 51 0.0011 31.1 5.2 36 14-49 120-157 (405)
383 PRK08862 short chain dehydroge 41.9 1.5E+02 0.0033 25.1 7.8 32 16-50 6-37 (227)
384 TIGR01286 nifK nitrogenase mol 41.8 43 0.00092 32.7 4.7 31 104-138 431-461 (515)
385 COG1435 Tdk Thymidine kinase [ 41.8 2.1E+02 0.0045 24.0 10.0 39 14-52 3-42 (201)
386 PF13720 Acetyltransf_11: Udp 41.6 88 0.0019 21.9 5.1 46 316-362 31-77 (83)
387 PRK06935 2-deoxy-D-gluconate 3 41.5 1.4E+02 0.003 25.7 7.6 33 16-51 16-48 (258)
388 PRK14076 pnk inorganic polypho 41.5 34 0.00074 33.9 4.1 54 257-332 348-405 (569)
389 cd07039 TPP_PYR_POX Pyrimidine 41.5 77 0.0017 25.5 5.5 26 261-286 65-96 (164)
390 cd07038 TPP_PYR_PDC_IPDC_like 41.4 50 0.0011 26.5 4.4 27 261-287 61-93 (162)
391 PRK02910 light-independent pro 41.3 45 0.00098 32.6 4.9 34 102-139 354-387 (519)
392 PRK13695 putative NTPase; Prov 41.3 1.3E+02 0.0028 24.2 7.0 32 15-46 1-32 (174)
393 cd01141 TroA_d Periplasmic bin 40.9 47 0.001 27.1 4.3 29 111-139 69-99 (186)
394 PRK05636 replicative DNA helic 40.7 69 0.0015 31.2 5.9 41 17-57 268-309 (505)
395 TIGR00877 purD phosphoribosyla 40.6 1.7E+02 0.0036 27.6 8.5 35 15-54 1-35 (423)
396 TIGR03453 partition_RepA plasm 40.4 55 0.0012 30.6 5.1 40 12-51 101-142 (387)
397 COG2099 CobK Precorrin-6x redu 40.4 61 0.0013 28.1 4.8 104 33-138 119-228 (257)
398 PF14359 DUF4406: Domain of un 40.3 48 0.001 23.8 3.7 28 19-46 2-33 (92)
399 PLN00016 RNA-binding protein; 40.2 41 0.0009 31.2 4.3 38 13-52 51-90 (378)
400 COG0299 PurN Folate-dependent 40.2 48 0.001 27.5 4.0 31 111-141 29-59 (200)
401 cd01981 Pchlide_reductase_B Pc 40.1 51 0.0011 31.3 4.9 35 102-140 362-396 (430)
402 TIGR03877 thermo_KaiC_1 KaiC d 39.6 2.3E+02 0.005 24.2 8.6 44 14-57 21-64 (237)
403 PLN02735 carbamoyl-phosphate s 39.5 2.5E+02 0.0054 30.5 10.3 39 14-52 23-67 (1102)
404 PRK13197 pyrrolidone-carboxyla 39.5 1E+02 0.0022 26.2 6.1 27 14-40 1-29 (215)
405 PRK06835 DNA replication prote 39.4 33 0.00072 31.3 3.4 44 15-58 184-227 (329)
406 TIGR01278 DPOR_BchB light-inde 39.4 51 0.0011 32.2 4.9 33 102-138 356-388 (511)
407 PRK13185 chlL protochlorophyll 39.1 57 0.0012 28.5 4.8 33 17-49 5-37 (270)
408 PF01372 Melittin: Melittin; 38.9 5.1 0.00011 20.6 -1.1 17 268-284 1-17 (26)
409 cd01976 Nitrogenase_MoFe_alpha 38.9 42 0.00091 31.8 4.1 35 101-139 360-394 (421)
410 PF12695 Abhydrolase_5: Alpha/ 38.5 77 0.0017 24.0 5.1 33 17-49 1-33 (145)
411 COG0503 Apt Adenine/guanine ph 38.5 1.9E+02 0.0041 23.7 7.4 37 103-140 46-84 (179)
412 PLN02496 probable phosphopanto 38.4 42 0.0009 28.3 3.5 46 12-59 17-62 (209)
413 PRK07773 replicative DNA helic 38.4 1E+02 0.0022 32.6 7.1 41 17-57 220-261 (886)
414 PRK07478 short chain dehydroge 38.4 2.2E+02 0.0048 24.2 8.5 33 16-51 7-39 (254)
415 PRK06194 hypothetical protein; 38.2 1.7E+02 0.0036 25.6 7.8 32 16-50 7-38 (287)
416 TIGR01832 kduD 2-deoxy-D-gluco 38.1 2.1E+02 0.0045 24.3 8.2 33 16-51 6-38 (248)
417 COG0771 MurD UDP-N-acetylmuram 38.0 55 0.0012 31.2 4.7 36 14-54 7-42 (448)
418 PRK14619 NAD(P)H-dependent gly 37.8 44 0.00096 30.0 4.0 34 13-51 3-36 (308)
419 PRK13604 luxD acyl transferase 37.8 76 0.0016 28.6 5.3 36 13-48 35-70 (307)
420 PF03720 UDPG_MGDP_dh_C: UDP-g 37.8 43 0.00093 24.6 3.2 22 29-50 17-38 (106)
421 PF02635 DrsE: DsrE/DsrF-like 37.7 1.4E+02 0.0029 22.0 6.2 44 15-58 1-50 (122)
422 PRK08993 2-deoxy-D-gluconate 3 37.4 1.9E+02 0.0041 24.7 7.9 32 16-50 11-42 (253)
423 PRK08125 bifunctional UDP-gluc 37.4 79 0.0017 32.0 6.0 33 15-52 1-34 (660)
424 cd00501 Peptidase_C15 Pyroglut 37.3 1.7E+02 0.0037 24.2 7.1 27 15-41 1-29 (194)
425 PRK12859 3-ketoacyl-(acyl-carr 36.9 1.5E+02 0.0033 25.4 7.2 33 16-49 7-39 (256)
426 PRK10037 cell division protein 36.7 64 0.0014 27.9 4.7 34 16-49 3-37 (250)
427 PRK11780 isoprenoid biosynthes 36.7 81 0.0017 26.8 5.1 38 15-52 2-43 (217)
428 PLN02695 GDP-D-mannose-3',5'-e 36.6 70 0.0015 29.6 5.2 37 10-50 17-53 (370)
429 PRK00094 gpsA NAD(P)H-dependen 36.6 42 0.00092 30.2 3.7 33 14-51 1-33 (325)
430 PRK07856 short chain dehydroge 36.4 2.7E+02 0.0059 23.7 8.7 33 16-51 7-39 (252)
431 COG2910 Putative NADH-flavin r 36.4 36 0.00079 28.1 2.8 36 15-54 1-36 (211)
432 PF07991 IlvN: Acetohydroxy ac 36.3 19 0.00041 29.0 1.1 50 14-73 4-55 (165)
433 KOG1209 1-Acyl dihydroxyaceton 36.3 49 0.0011 28.1 3.5 33 12-49 5-39 (289)
434 cd00316 Oxidoreductase_nitroge 36.1 3.4E+02 0.0074 25.2 9.8 34 102-139 340-373 (399)
435 TIGR03018 pepcterm_TyrKin exop 36.0 91 0.002 26.0 5.4 40 12-51 32-74 (207)
436 PRK08462 biotin carboxylase; V 36.0 3.9E+02 0.0084 25.4 10.5 36 14-54 4-39 (445)
437 PF00070 Pyr_redox: Pyridine n 35.9 57 0.0012 22.3 3.5 25 29-53 9-33 (80)
438 COG2327 WcaK Polysaccharide py 35.9 79 0.0017 29.4 5.2 76 252-337 280-357 (385)
439 COG2084 MmsB 3-hydroxyisobutyr 35.9 53 0.0011 29.2 4.0 32 15-51 1-32 (286)
440 PF03721 UDPG_MGDP_dh_N: UDP-g 35.9 58 0.0013 26.8 4.0 39 15-58 1-40 (185)
441 PF01380 SIS: SIS domain SIS d 35.7 68 0.0015 24.1 4.3 36 24-59 62-97 (131)
442 TIGR00064 ftsY signal recognit 35.6 1E+02 0.0022 27.2 5.8 40 14-53 72-111 (272)
443 PF13450 NAD_binding_8: NAD(P) 35.6 50 0.0011 22.0 3.0 21 31-51 8-28 (68)
444 PRK05246 glutathione synthetas 35.4 69 0.0015 29.0 4.8 43 14-56 1-46 (316)
445 PF02558 ApbA: Ketopantoate re 35.4 23 0.00051 27.7 1.6 36 32-72 11-46 (151)
446 cd01983 Fer4_NifH The Fer4_Nif 35.3 96 0.0021 21.4 4.8 33 17-49 2-34 (99)
447 PF07894 DUF1669: Protein of u 35.2 80 0.0017 28.0 4.9 44 98-141 135-183 (284)
448 PHA02519 plasmid partition pro 35.1 78 0.0017 29.6 5.2 37 13-49 104-142 (387)
449 COG3959 Transketolase, N-termi 35.1 2.9E+02 0.0063 23.7 8.2 44 8-51 104-150 (243)
450 PF14626 RNase_Zc3h12a_2: Zc3h 35.1 54 0.0012 24.7 3.3 32 28-59 9-40 (122)
451 TIGR02128 G6PI_arch bifunction 35.0 2.5E+02 0.0054 25.4 8.2 113 18-139 69-184 (308)
452 cd03115 SRP The signal recogni 34.9 91 0.002 25.0 5.1 38 17-54 3-40 (173)
453 TIGR00460 fmt methionyl-tRNA f 34.8 48 0.001 30.0 3.7 31 15-50 1-31 (313)
454 PRK09739 hypothetical protein; 34.8 1.1E+02 0.0024 25.3 5.7 37 13-49 2-41 (199)
455 PRK00207 sulfur transfer compl 34.8 78 0.0017 24.3 4.3 44 15-58 1-48 (128)
456 PRK00750 lysK lysyl-tRNA synth 34.7 1.1E+02 0.0024 29.8 6.3 35 25-59 39-76 (510)
457 PF02571 CbiJ: Precorrin-6x re 34.7 1.2E+02 0.0026 26.4 6.0 103 31-138 118-225 (249)
458 PF00551 Formyl_trans_N: Formy 34.5 93 0.002 25.4 5.1 105 15-141 1-110 (181)
459 PRK01175 phosphoribosylformylg 34.5 3.2E+02 0.007 24.0 10.2 57 14-77 3-59 (261)
460 COG2120 Uncharacterized protei 34.4 74 0.0016 27.4 4.6 42 10-51 6-47 (237)
461 PRK06756 flavodoxin; Provision 34.3 85 0.0018 24.5 4.7 37 14-50 1-38 (148)
462 COG2109 BtuR ATP:corrinoid ade 34.2 2.7E+02 0.006 23.1 10.2 103 12-122 26-133 (198)
463 COG1043 LpxA Acyl-[acyl carrie 34.2 1.1E+02 0.0023 26.5 5.2 46 317-363 209-255 (260)
464 PRK08939 primosomal protein Dn 34.1 51 0.0011 29.7 3.7 45 14-58 156-200 (306)
465 PF00148 Oxidored_nitro: Nitro 34.1 2.4E+02 0.0052 26.3 8.5 92 14-138 271-365 (398)
466 PRK00885 phosphoribosylamine-- 34.1 1.1E+02 0.0025 28.8 6.3 29 15-48 1-30 (420)
467 PRK12475 thiamine/molybdopteri 33.9 1.5E+02 0.0032 27.2 6.7 32 14-50 24-56 (338)
468 PLN03064 alpha,alpha-trehalose 33.9 2.7E+02 0.0059 29.5 9.2 95 253-361 455-561 (934)
469 COG0452 Dfp Phosphopantothenoy 33.9 53 0.0012 30.8 3.9 43 16-59 6-48 (392)
470 TIGR02329 propionate_PrpR prop 33.9 3.3E+02 0.0071 26.8 9.4 97 26-140 37-171 (526)
471 PRK08181 transposase; Validate 33.8 47 0.001 29.3 3.3 45 14-58 106-150 (269)
472 PLN00141 Tic62-NAD(P)-related 33.8 1E+02 0.0022 26.5 5.5 34 13-50 16-49 (251)
473 TIGR03026 NDP-sugDHase nucleot 33.7 59 0.0013 30.7 4.2 31 15-50 1-31 (411)
474 cd01715 ETF_alpha The electron 33.5 1.2E+02 0.0025 24.4 5.4 42 100-142 73-117 (168)
475 PRK03094 hypothetical protein; 33.4 41 0.00089 23.4 2.3 20 32-51 11-30 (80)
476 PRK12829 short chain dehydroge 33.3 1E+02 0.0022 26.5 5.5 40 8-51 5-44 (264)
477 PRK06222 ferredoxin-NADP(+) re 33.2 85 0.0018 27.8 5.0 36 15-52 99-134 (281)
478 PRK10125 putative glycosyl tra 33.2 72 0.0016 30.0 4.7 39 15-53 1-41 (405)
479 TIGR00853 pts-lac PTS system, 32.9 1.3E+02 0.0027 21.7 4.9 39 13-51 2-40 (95)
480 CHL00175 minD septum-site dete 32.7 96 0.0021 27.3 5.2 39 13-51 13-53 (281)
481 PRK14618 NAD(P)H-dependent gly 32.6 55 0.0012 29.7 3.8 33 14-51 4-36 (328)
482 COG0859 RfaF ADP-heptose:LPS h 32.5 69 0.0015 29.2 4.4 101 14-142 175-280 (334)
483 PF13460 NAD_binding_10: NADH( 32.5 1E+02 0.0022 24.8 5.1 44 22-73 4-47 (183)
484 cd02040 NifH NifH gene encodes 32.4 86 0.0019 27.3 4.9 35 15-49 2-36 (270)
485 KOG0991 Replication factor C, 32.2 57 0.0012 28.2 3.3 33 8-40 42-74 (333)
486 PRK06526 transposase; Provisio 32.2 31 0.00067 30.2 1.9 45 14-58 98-142 (254)
487 PRK06603 enoyl-(acyl carrier p 32.1 1E+02 0.0022 26.7 5.3 35 15-50 8-42 (260)
488 PF09334 tRNA-synt_1g: tRNA sy 32.1 34 0.00074 32.0 2.3 35 24-58 15-53 (391)
489 TIGR00745 apbA_panE 2-dehydrop 32.1 32 0.0007 30.4 2.1 34 33-71 5-38 (293)
490 PF03698 UPF0180: Uncharacteri 32.0 44 0.00096 23.3 2.3 22 31-52 10-31 (80)
491 PF05524 PEP-utilisers_N: PEP- 32.0 1.2E+02 0.0027 22.8 5.1 41 320-360 68-108 (123)
492 KOG2825 Putative arsenite-tran 31.9 1.8E+02 0.0039 25.5 6.2 43 11-53 15-58 (323)
493 PF01497 Peripla_BP_2: Peripla 31.9 70 0.0015 27.0 4.2 36 106-142 56-93 (238)
494 PRK06719 precorrin-2 dehydroge 31.8 65 0.0014 25.7 3.6 39 14-58 13-51 (157)
495 PF04244 DPRP: Deoxyribodipyri 31.7 47 0.001 28.4 2.9 26 27-52 47-72 (224)
496 PRK10818 cell division inhibit 31.7 84 0.0018 27.4 4.7 38 15-52 2-41 (270)
497 PRK13849 putative crown gall t 31.6 85 0.0018 26.9 4.5 36 17-52 4-40 (231)
498 PF07801 DUF1647: Protein of u 31.5 85 0.0018 24.7 4.0 62 12-73 57-120 (142)
499 cd00860 ThrRS_anticodon ThrRS 31.5 1E+02 0.0023 21.3 4.4 33 15-48 2-34 (91)
500 PRK08309 short chain dehydroge 31.5 63 0.0014 26.4 3.6 97 15-134 1-101 (177)
No 1
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=4.6e-55 Score=409.26 Aligned_cols=353 Identities=38% Similarity=0.694 Sum_probs=271.3
Q ss_pred hccCCCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCccccccccCCC-------C--CCCCeeEEEcCCCCCC
Q 036519 8 ASASSKLAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLHRDP-------S--SSISIPLETISDGYDE 78 (365)
Q Consensus 8 ~~~~~~~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~~~~-------~--~~~gi~~~~l~~~~~~ 78 (365)
|.+...+.||+++|+|++||++|++.||+.|+.+|..|||++|+.+...+.+.. . +...+.|..+|+++|+
T Consensus 1 ~~~~~~~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~pdglp~ 80 (480)
T PLN02555 1 MESESSLVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFEDGWAE 80 (480)
T ss_pred CCCCCCCCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCCCCCCC
Confidence 445566789999999999999999999999999999999999998766554200 0 1123677778888876
Q ss_pred CCCCCcCCHHHHHHHHHHHhHHHHHHHHHhcC---C-CcEEEEcCCCccHHHHHHHhCCceEEEecccHHHHHHHHHhhc
Q 036519 79 GRSAQAETDQAYVDRFWQIGVQTLTELVERMN---D-VDCIVYDSFLPWALDVAKKFGLTGAAFLTQSCTVASIYHYVNK 154 (365)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~---~-pD~vv~D~~~~~a~~~A~~~giP~v~~~~~~~~~~~~~~~~~~ 154 (365)
+.+...++..++..+.....+.++++++++. + ++|||+|.+++|+..+|+++|||.+.|++++++..+.+++...
T Consensus 81 -~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~~~~~~ 159 (480)
T PLN02555 81 -DDPRRQDLDLYLPQLELVGKREIPNLVKRYAEQGRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAYYHYYH 159 (480)
T ss_pred -CcccccCHHHHHHHHHHhhhHHHHHHHHHHhccCCCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHHHHHhh
Confidence 3333334555566666566777888887642 3 4999999999999999999999999999999999998877755
Q ss_pred ccccCCC---CCCccccCCCCCCCCCCCCCccCCCCCchhHHHHHHHhhhhccccchhHhHhhHhhhhhhh---------
Q 036519 155 GLIKLPL---TGDQVFLPGLPPLDPQDTPSFINDPASYPAFFDMILTRQFSNIDKADWILCNTFYELEKEV--------- 222 (365)
Q Consensus 155 ~~~~~~~---~~~~~~~pg~p~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------- 222 (365)
+..++.. ...++.+||+|+++..++|.++........++..+ ........+++.+++|+|.+||..+
T Consensus 160 ~~~~~~~~~~~~~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~-~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~~~~~ 238 (480)
T PLN02555 160 GLVPFPTETEPEIDVQLPCMPLLKYDEIPSFLHPSSPYPFLRRAI-LGQYKNLDKPFCILIDTFQELEKEIIDYMSKLCP 238 (480)
T ss_pred cCCCcccccCCCceeecCCCCCcCHhhCcccccCCCCchHHHHHH-HHHHHhcccCCEEEEEchHHHhHHHHHHHhhCCC
Confidence 5333222 12346799999999999998775322223333333 3333444555667777777776543
Q ss_pred -----------------------------------------------------------------------hCchh----
Q 036519 223 -----------------------------------------------------------------------IKESE---- 227 (365)
Q Consensus 223 -----------------------------------------------------------------------~~~~~---- 227 (365)
+|...
T Consensus 239 v~~iGPl~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~l~~~~~~flW~~~~~~~ 318 (480)
T PLN02555 239 IKPVGPLFKMAKTPNSDVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYGVLNSGVSFLWVMRPPHK 318 (480)
T ss_pred EEEeCcccCccccccccccccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHHHHhcCCeEEEEEecCcc
Confidence 34321
Q ss_pred -----hCCCCcccccccCCCCeEEeecchhhhhcccccccccccCChhhHHHHHHcCCCeeeccccCchhhHHHHHHhHh
Q 036519 228 -----QSKLPENFSDETTQKGLVVNWCPQLGVLAHEATGCFLTHCGWNSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVW 302 (365)
Q Consensus 228 -----~~~~p~~~~~~~~~~~~~~~~~p~~~~L~~~~~~~~I~hgG~gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~~ 302 (365)
.+.+|+++.++.++|+++++|+||.+||.|.++++||||||+||++||+++|||||++|++.||+.||+++++.|
T Consensus 319 ~~~~~~~~lp~~~~~~~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~ 398 (480)
T PLN02555 319 DSGVEPHVLPEEFLEKAGDKGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVCFPQWGDQVTDAVYLVDVF 398 (480)
T ss_pred cccchhhcCChhhhhhcCCceEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCEEeCCCccccHHHHHHHHHHh
Confidence 124677887778889999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeEecCC--CCCcccHHHHHHHHHHHhcCH---HHHHHHHHH-------HHcCCCcHHHHHHHHHHHHhc
Q 036519 303 KMGLKVPAD--EKGIVRREAIAHCIGEILEGD---KWRNFAKEA-------VAKGGSSDKNIDDFVANLISS 362 (365)
Q Consensus 303 G~G~~~~~~--~~~~~~~~~l~~~i~~ll~~~---~~~~~a~~~-------~~~~g~s~~~~~~~~~~i~~~ 362 (365)
|+|+.+... .++.+++++|.++|+++|.++ ++|+||+++ .++||||++++++||+.|.++
T Consensus 399 gvGv~l~~~~~~~~~v~~~~v~~~v~~vm~~~~g~~~r~ra~~l~~~a~~A~~egGSS~~~l~~~v~~i~~~ 470 (480)
T PLN02555 399 KTGVRLCRGEAENKLITREEVAECLLEATVGEKAAELKQNALKWKEEAEAAVAEGGSSDRNFQEFVDKLVRK 470 (480)
T ss_pred CceEEccCCccccCcCcHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhc
Confidence 999999531 123689999999999999653 566666554 556899999999999999865
No 2
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=3.3e-54 Score=400.32 Aligned_cols=342 Identities=43% Similarity=0.803 Sum_probs=261.0
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCccccccccCCCCCCCCeeEEEcCCCCCCCCCCCcCCHHHHH
Q 036519 12 SKLAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLHRDPSSSISIPLETISDGYDEGRSAQAETDQAYV 91 (365)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~~~~~~~~gi~~~~l~~~~~~~~~~~~~~~~~~~ 91 (365)
+++.||+++|+|++||++|++.||+.|+.+|+.|||++|+.+...+.. ...+++.|+.+|+++|+...+...++..++
T Consensus 3 ~~~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~--~~~~~i~~~~ipdglp~~~~~~~~~~~~~~ 80 (449)
T PLN02173 3 KMRGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHL--DPSSPISIATISDGYDQGGFSSAGSVPEYL 80 (449)
T ss_pred CCCcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhccc--CCCCCEEEEEcCCCCCCcccccccCHHHHH
Confidence 456799999999999999999999999999999999999987666542 222469999999988862223333455666
Q ss_pred HHHHHHhHHHHHHHHHhcC---CC-cEEEEcCCCccHHHHHHHhCCceEEEecccHHHHHHHHHhhcccccCCCCCCccc
Q 036519 92 DRFWQIGVQTLTELVERMN---DV-DCIVYDSFLPWALDVAKKFGLTGAAFLTQSCTVASIYHYVNKGLIKLPLTGDQVF 167 (365)
Q Consensus 92 ~~~~~~~~~~l~~ll~~~~---~p-D~vv~D~~~~~a~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (365)
..+...+.+.+++++++.. +| +|||+|.+++|+..+|+++|||++.|++++++....+++.... .....+.
T Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~~~~~-----~~~~~~~ 155 (449)
T PLN02173 81 QNFKTFGSKTVADIIRKHQSTDNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYLSYIN-----NGSLTLP 155 (449)
T ss_pred HHHHHhhhHHHHHHHHHhhccCCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHhHHhc-----cCCccCC
Confidence 6666677778888888642 45 9999999999999999999999999999988887666543211 1123356
Q ss_pred cCCCCCCCCCCCCCccCCCCCchhHHHHHHHhhhhccccchhHhHhhHhhhhhhh---------------hC--------
Q 036519 168 LPGLPPLDPQDTPSFINDPASYPAFFDMILTRQFSNIDKADWILCNTFYELEKEV---------------IK-------- 224 (365)
Q Consensus 168 ~pg~p~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---------------~~-------- 224 (365)
+||+|+++.+++|.++........++..+ ........+++.+++|+|.++|.++ +.
T Consensus 156 ~pg~p~l~~~dlp~~~~~~~~~~~~~~~~-~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~v~~VGPl~~~~~~~~~ 234 (449)
T PLN02173 156 IKDLPLLELQDLPTFVTPTGSHLAYFEMV-LQQFTNFDKADFVLVNSFHDLDLHENELLSKVCPVLTIGPTVPSMYLDQQ 234 (449)
T ss_pred CCCCCCCChhhCChhhcCCCCchHHHHHH-HHHHhhhccCCEEEEeCHHHhhHHHHHHHHhcCCeeEEcccCchhhcccc
Confidence 89999999999998775432222233333 3333455566678888888887653 10
Q ss_pred --------------------------------------------------------------chh---hCCCCccccccc
Q 036519 225 --------------------------------------------------------------ESE---QSKLPENFSDET 239 (365)
Q Consensus 225 --------------------------------------------------------------~~~---~~~~p~~~~~~~ 239 (365)
... ...+|+++.++.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gLs~~~flWvvr~~~~~~lp~~~~~~~ 314 (449)
T PLN02173 235 IKSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAISNFSYLWVVRASEESKLPPGFLETV 314 (449)
T ss_pred ccccccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHhcCCCEEEEEeccchhcccchHHHhh
Confidence 000 001333444333
Q ss_pred -CCCCeEEeecchhhhhcccccccccccCChhhHHHHHHcCCCeeeccccCchhhHHHHHHhHhcceeEecCCC-CCccc
Q 036519 240 -TQKGLVVNWCPQLGVLAHEATGCFLTHCGWNSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVWKMGLKVPADE-KGIVR 317 (365)
Q Consensus 240 -~~~~~~~~~~p~~~~L~~~~~~~~I~hgG~gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~-~~~~~ 317 (365)
++|+++++|+||.+||+|+++++||||||+||++|++++|||||++|++.||+.||+++++.||+|+.+.... ++.++
T Consensus 315 ~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~~g~Gv~v~~~~~~~~~~ 394 (449)
T PLN02173 315 DKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQDVWKVGVRVKAEKESGIAK 394 (449)
T ss_pred cCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEecCchhcchHHHHHHHHHhCceEEEeecccCCccc
Confidence 4678889999999999999999999999999999999999999999999999999999999889999997541 23479
Q ss_pred HHHHHHHHHHHhcCH---HHHHHHHH-------HHHcCCCcHHHHHHHHHHHHh
Q 036519 318 REAIAHCIGEILEGD---KWRNFAKE-------AVAKGGSSDKNIDDFVANLIS 361 (365)
Q Consensus 318 ~~~l~~~i~~ll~~~---~~~~~a~~-------~~~~~g~s~~~~~~~~~~i~~ 361 (365)
+++|+++|+++|.|+ ++|++|++ +.+++|||++++++|++.+.-
T Consensus 395 ~e~v~~av~~vm~~~~~~~~r~~a~~~~~~a~~Av~~gGSS~~~l~~~v~~~~~ 448 (449)
T PLN02173 395 REEIEFSIKEVMEGEKSKEMKENAGKWRDLAVKSLSEGGSTDININTFVSKIQI 448 (449)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcc
Confidence 999999999999764 45655554 455799999999999998853
No 3
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.5e-53 Score=397.69 Aligned_cols=342 Identities=27% Similarity=0.469 Sum_probs=262.6
Q ss_pred hccCCCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCccccccccCCCCCCCCeeEEEcCCCCCCCCCCCcCCH
Q 036519 8 ASASSKLAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLHRDPSSSISIPLETISDGYDEGRSAQAETD 87 (365)
Q Consensus 8 ~~~~~~~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~~~~~~~~gi~~~~l~~~~~~~~~~~~~~~ 87 (365)
|++.....||+++|+|++||++|++.||+.|+.+|+.|||++++.+..... ....++.|..+|+++|+...+.. ..
T Consensus 1 ~~~~~~~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~~~---~~~~~i~~~~ip~glp~~~~~~~-~~ 76 (451)
T PLN02410 1 MEEKPARRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFSPS---DDFTDFQFVTIPESLPESDFKNL-GP 76 (451)
T ss_pred CCcCCCCCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCcccccccc---cCCCCeEEEeCCCCCCccccccc-CH
Confidence 344456789999999999999999999999999999999999997753211 11146999999998886222222 23
Q ss_pred HHHHHHHHHHhHHHHHHHHHhcC-----CCcEEEEcCCCccHHHHHHHhCCceEEEecccHHHHHHHHHhhc---c-c-c
Q 036519 88 QAYVDRFWQIGVQTLTELVERMN-----DVDCIVYDSFLPWALDVAKKFGLTGAAFLTQSCTVASIYHYVNK---G-L-I 157 (365)
Q Consensus 88 ~~~~~~~~~~~~~~l~~ll~~~~-----~pD~vv~D~~~~~a~~~A~~~giP~v~~~~~~~~~~~~~~~~~~---~-~-~ 157 (365)
..++..+...+...+.++++++. +|+|||+|.+++|+..+|+++|||++.|++++++..+.++.... . . .
T Consensus 77 ~~~~~~~~~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~~~~~ 156 (451)
T PLN02410 77 IEFLHKLNKECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDKLYANNVLA 156 (451)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHHHHhccCCC
Confidence 34555555566667777777641 57999999999999999999999999999999998877665321 1 0 1
Q ss_pred cCCC--CCCccccCCCCCCCCCCCCCccCCCCCchhHHHHHHHhhhhccccchhHhHhhHhhhhhhh-------------
Q 036519 158 KLPL--TGDQVFLPGLPPLDPQDTPSFINDPASYPAFFDMILTRQFSNIDKADWILCNTFYELEKEV------------- 222 (365)
Q Consensus 158 ~~~~--~~~~~~~pg~p~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------------- 222 (365)
+... ......+||+|+++..++|.+.... ...+...+ ... ....+++.+++|+|.++|.++
T Consensus 157 ~~~~~~~~~~~~iPg~~~~~~~dlp~~~~~~--~~~~~~~~-~~~-~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~~~v~ 232 (451)
T PLN02410 157 PLKEPKGQQNELVPEFHPLRCKDFPVSHWAS--LESIMELY-RNT-VDKRTASSVIINTASCLESSSLSRLQQQLQIPVY 232 (451)
T ss_pred CccccccCccccCCCCCCCChHHCcchhcCC--cHHHHHHH-HHH-hhcccCCEEEEeChHHhhHHHHHHHHhccCCCEE
Confidence 2111 1123468999988888888754321 11222222 221 123456677888888887664
Q ss_pred ----------------------------------------------------------------hCchhh---------C
Q 036519 223 ----------------------------------------------------------------IKESEQ---------S 229 (365)
Q Consensus 223 ----------------------------------------------------------------~~~~~~---------~ 229 (365)
+|.... .
T Consensus 233 ~vGpl~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv~r~~~~~~~~~~~ 312 (451)
T PLN02410 233 PIGPLHLVASAPTSLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVIRPGSVRGSEWIE 312 (451)
T ss_pred EecccccccCCCccccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEEEccCcccccchhh
Confidence 343221 1
Q ss_pred CCCcccccccCCCCeEEeecchhhhhcccccccccccCChhhHHHHHHcCCCeeeccccCchhhHHHHHHhHhcceeEec
Q 036519 230 KLPENFSDETTQKGLVVNWCPQLGVLAHEATGCFLTHCGWNSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVWKMGLKVP 309 (365)
Q Consensus 230 ~~p~~~~~~~~~~~~~~~~~p~~~~L~~~~~~~~I~hgG~gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~~~ 309 (365)
.+|++|.++.++|+++++|+||.+||+|+++++||||||+||++||+++|||||++|++.||+.||+++++.||+|+.+.
T Consensus 313 ~lp~~f~er~~~~g~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~ 392 (451)
T PLN02410 313 SLPKEFSKIISGRGYIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFSSDQKVNARYLECVWKIGIQVE 392 (451)
T ss_pred cCChhHHHhccCCeEEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEeccccccCHHHHHHHHHHhCeeEEeC
Confidence 37889998899999999999999999999999999999999999999999999999999999999999999899999997
Q ss_pred CCCCCcccHHHHHHHHHHHhcCH---HHHHHHHHH-------HHcCCCcHHHHHHHHHHHHh
Q 036519 310 ADEKGIVRREAIAHCIGEILEGD---KWRNFAKEA-------VAKGGSSDKNIDDFVANLIS 361 (365)
Q Consensus 310 ~~~~~~~~~~~l~~~i~~ll~~~---~~~~~a~~~-------~~~~g~s~~~~~~~~~~i~~ 361 (365)
. .+++++|+++|+++|.|+ ++|++++++ .++||||++++++||+.++.
T Consensus 393 -~---~~~~~~v~~av~~lm~~~~~~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~fv~~~~~ 450 (451)
T PLN02410 393 -G---DLDRGAVERAVKRLMVEEEGEEMRKRAISLKEQLRASVISGGSSHNSLEEFVHFMRT 450 (451)
T ss_pred -C---cccHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Confidence 3 689999999999999764 677777654 34789999999999999875
No 4
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=2.1e-53 Score=397.78 Aligned_cols=339 Identities=28% Similarity=0.519 Sum_probs=255.1
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCccccccccCCCCCCCCeeEEEcCCCCCCCCCCCcCCHHHHHH
Q 036519 13 KLAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLHRDPSSSISIPLETISDGYDEGRSAQAETDQAYVD 92 (365)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~~~~~~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~ 92 (365)
.+.||+++|+|++||++|++.||+.|+.+|++|||++++.+.+.+.+.....+++.|+.+|++++. +. ..++..+..
T Consensus 5 ~~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~~~~~i~~v~lp~g~~~-~~--~~~~~~l~~ 81 (448)
T PLN02562 5 QRPKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLDPKLGITFMSISDGQDD-DP--PRDFFSIEN 81 (448)
T ss_pred CCcEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccCCCCCEEEEECCCCCCC-Cc--cccHHHHHH
Confidence 346999999999999999999999999999999999999887666531011247999999987764 22 123434444
Q ss_pred HHHHHhHHHHHHHHHhcC---CCcEEEEcCCCccHHHHHHHhCCceEEEecccHHHHHHHHHhh----cccccCCC---C
Q 036519 93 RFWQIGVQTLTELVERMN---DVDCIVYDSFLPWALDVAKKFGLTGAAFLTQSCTVASIYHYVN----KGLIKLPL---T 162 (365)
Q Consensus 93 ~~~~~~~~~l~~ll~~~~---~pD~vv~D~~~~~a~~~A~~~giP~v~~~~~~~~~~~~~~~~~----~~~~~~~~---~ 162 (365)
.+...+.+.+.++++++. +++|||+|.+.+|+..+|+++|||++.|+++++..++.+++.. .+..+..+ .
T Consensus 82 a~~~~~~~~l~~ll~~l~~~~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (448)
T PLN02562 82 SMENTMPPQLERLLHKLDEDGEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRTGLISETGCPRQ 161 (448)
T ss_pred HHHHhchHHHHHHHHHhcCCCCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhcccccccccccc
Confidence 444456777888888763 3489999999999999999999999999999988777765432 11122111 1
Q ss_pred CCcc-ccCCCCCCCCCCCCCccCCCCCchhHHHHHHHhhhhccccchhHhHhhHhhhhhhh-------------------
Q 036519 163 GDQV-FLPGLPPLDPQDTPSFINDPASYPAFFDMILTRQFSNIDKADWILCNTFYELEKEV------------------- 222 (365)
Q Consensus 163 ~~~~-~~pg~p~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------------------- 222 (365)
..++ .+||+|.++..++|.++.........+..+ ........++..+++|+|.++|...
T Consensus 162 ~~~~~~~Pg~~~l~~~dl~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~~~~~v~~i 240 (448)
T PLN02562 162 LEKICVLPEQPLLSTEDLPWLIGTPKARKARFKFW-TRTLERTKSLRWILMNSFKDEEYDDVKNHQASYNNGQNPQILQI 240 (448)
T ss_pred ccccccCCCCCCCChhhCcchhcCCCcchHHHHHH-HHHHhccccCCEEEEcChhhhCHHHHHHHHhhhccccCCCEEEe
Confidence 1222 589999888899998764322122222333 2323334444556666666665431
Q ss_pred ------------------------------------------------------------------hCchh---hCCCCc
Q 036519 223 ------------------------------------------------------------------IKESE---QSKLPE 233 (365)
Q Consensus 223 ------------------------------------------------------------------~~~~~---~~~~p~ 233 (365)
+|... .+.+|+
T Consensus 241 Gpl~~~~~~~~~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~fiW~~~~~~~~~l~~ 320 (448)
T PLN02562 241 GPLHNQEATTITKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALEASGRPFIWVLNPVWREGLPP 320 (448)
T ss_pred cCcccccccccCCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHHHCCCCEEEEEcCCchhhCCH
Confidence 33221 123555
Q ss_pred ccccccCCCCeEEeecchhhhhcccccccccccCChhhHHHHHHcCCCeeeccccCchhhHHHHHHhHhcceeEecCCCC
Q 036519 234 NFSDETTQKGLVVNWCPQLGVLAHEATGCFLTHCGWNSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVWKMGLKVPADEK 313 (365)
Q Consensus 234 ~~~~~~~~~~~~~~~~p~~~~L~~~~~~~~I~hgG~gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~ 313 (365)
++.++.++|+++++|+||.+||+|+++++||||||+||++|++++|||||++|+++||+.||+++++.||+|+.+.
T Consensus 321 ~~~~~~~~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~---- 396 (448)
T PLN02562 321 GYVERVSKQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDVWKIGVRIS---- 396 (448)
T ss_pred HHHHHhccCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEeCCcccchHHHHHHHHHHhCceeEeC----
Confidence 6666667899999999999999999999999999999999999999999999999999999999987679999985
Q ss_pred CcccHHHHHHHHHHHhcCHHHHHHHHHHHHc------CCCcHHHHHHHHHHHH
Q 036519 314 GIVRREAIAHCIGEILEGDKWRNFAKEAVAK------GGSSDKNIDDFVANLI 360 (365)
Q Consensus 314 ~~~~~~~l~~~i~~ll~~~~~~~~a~~~~~~------~g~s~~~~~~~~~~i~ 360 (365)
++++++|.++|+++|.|++||++|++++++ ||||++++++||+.++
T Consensus 397 -~~~~~~l~~~v~~~l~~~~~r~~a~~l~~~~~~~~~gGSS~~nl~~~v~~~~ 448 (448)
T PLN02562 397 -GFGQKEVEEGLRKVMEDSGMGERLMKLRERAMGEEARLRSMMNFTTLKDELK 448 (448)
T ss_pred -CCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhC
Confidence 579999999999999999999999876332 4899999999999874
No 5
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=1.9e-52 Score=391.67 Aligned_cols=344 Identities=31% Similarity=0.589 Sum_probs=251.1
Q ss_pred CCCCcEEEEEcCCCCCChHHHHHHHHH--HHhCCCeEEEEeCccccccccCCCCCCCCeeEEEcCCCCCCCCCCCcCCHH
Q 036519 11 SSKLAHCLVLSYPAQGHMNPLLQFSKR--LEHNGIKVTLVTTYFISKSLHRDPSSSISIPLETISDGYDEGRSAQAETDQ 88 (365)
Q Consensus 11 ~~~~~~il~~~~~~~GH~~p~l~la~~--L~~~Gh~Vt~~~~~~~~~~v~~~~~~~~gi~~~~l~~~~~~~~~~~~~~~~ 88 (365)
.+.+.||+|+|+|++||++|++.||++ |++||++|||++++.+.+.++........+.+..+|+++|+ +.. .+..
T Consensus 5 ~~~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~~~~~glp~-~~~--~~~~ 81 (456)
T PLN02210 5 EGQETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTVEKPRRPVDLVFFSDGLPK-DDP--RAPE 81 (456)
T ss_pred CCCCCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhccccCCCCceEEEECCCCCCC-Ccc--cCHH
Confidence 345689999999999999999999999 55899999999999987766531112346888888888887 332 2444
Q ss_pred HHHHHHHHHhHHHHHHHHHhcCCCcEEEEcCCCccHHHHHHHhCCceEEEecccHHHHHHHHHhhcccccCCCC---CCc
Q 036519 89 AYVDRFWQIGVQTLTELVERMNDVDCIVYDSFLPWALDVAKKFGLTGAAFLTQSCTVASIYHYVNKGLIKLPLT---GDQ 165 (365)
Q Consensus 89 ~~~~~~~~~~~~~l~~ll~~~~~pD~vv~D~~~~~a~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 165 (365)
.++..+.+.+...+.++++.. +|||||+|.++.|+..+|+++|||.+.|++.++..++.+++.+....+++.. ...
T Consensus 82 ~~~~~~~~~~~~~l~~~l~~~-~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (456)
T PLN02210 82 TLLKSLNKVGAKNLSKIIEEK-RYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMKTNSFPDLEDLNQT 160 (456)
T ss_pred HHHHHHHHhhhHHHHHHHhcC-CCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhccCCCCcccccCCe
Confidence 566666666666788888877 8999999999999999999999999999999998888777553322122211 133
Q ss_pred cccCCCCCCCCCCCCCccCCCCCchhHHHHHHHhhhhccccchhHhHhhHhhhhhhh-----------------------
Q 036519 166 VFLPGLPPLDPQDTPSFINDPASYPAFFDMILTRQFSNIDKADWILCNTFYELEKEV----------------------- 222 (365)
Q Consensus 166 ~~~pg~p~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----------------------- 222 (365)
+.+||+|++...++|.++..... ..+...+ ........++..+++|+|.++|.++
T Consensus 161 ~~~Pgl~~~~~~dl~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~v~~VGPl~~~~~~~ 238 (456)
T PLN02210 161 VELPALPLLEVRDLPSFMLPSGG-AHFNNLM-AEFADCLRYVKWVLVNSFYELESEIIESMADLKPVIPIGPLVSPFLLG 238 (456)
T ss_pred eeCCCCCCCChhhCChhhhcCCc-hHHHHHH-HHHHHhcccCCEEEEeCHHHHhHHHHHHHhhcCCEEEEcccCchhhcC
Confidence 56899988888888876643211 1111112 1222222333344444444444322
Q ss_pred ---------------------------------------------------------------hCchhhC---CCCcccc
Q 036519 223 ---------------------------------------------------------------IKESEQS---KLPENFS 236 (365)
Q Consensus 223 ---------------------------------------------------------------~~~~~~~---~~p~~~~ 236 (365)
+|..... ..++.+.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~flw~~~~~~~~~~~~~~~ 318 (456)
T PLN02210 239 DDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRGVPFLWVIRPKEKAQNVQVLQ 318 (456)
T ss_pred cccccccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEeCCccccchhhHH
Confidence 2221110 1122222
Q ss_pred ccc-CCCCeEEeecchhhhhcccccccccccCChhhHHHHHHcCCCeeeccccCchhhHHHHHHhHhcceeEecCCC-CC
Q 036519 237 DET-TQKGLVVNWCPQLGVLAHEATGCFLTHCGWNSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVWKMGLKVPADE-KG 314 (365)
Q Consensus 237 ~~~-~~~~~~~~~~p~~~~L~~~~~~~~I~hgG~gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~-~~ 314 (365)
+.. ++++++++|+||.+||+|+++++||||||+||++|++++|||||++|++.||+.||+++++.||+|+.+.... ++
T Consensus 319 ~~~~~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P~~~DQ~~na~~~~~~~g~G~~l~~~~~~~ 398 (456)
T PLN02210 319 EMVKEGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSWTDQPIDARLLVDVFGIGVRMRNDAVDG 398 (456)
T ss_pred hhccCCCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEecccccccHHHHHHHHHHhCeEEEEeccccCC
Confidence 222 3666788999999999999988899999999999999999999999999999999999998559999997431 34
Q ss_pred cccHHHHHHHHHHHhcCH---HHHHHHHH-------HHHcCCCcHHHHHHHHHHHH
Q 036519 315 IVRREAIAHCIGEILEGD---KWRNFAKE-------AVAKGGSSDKNIDDFVANLI 360 (365)
Q Consensus 315 ~~~~~~l~~~i~~ll~~~---~~~~~a~~-------~~~~~g~s~~~~~~~~~~i~ 360 (365)
.+++++|+++|+++|.|+ ++|++|++ +.++||||++++++||+.|+
T Consensus 399 ~~~~~~l~~av~~~m~~~~g~~~r~~a~~l~~~a~~Av~~gGSS~~~l~~~v~~~~ 454 (456)
T PLN02210 399 ELKVEEVERCIEAVTEGPAAADIRRRAAELKHVARLALAPGGSSARNLDLFISDIT 454 (456)
T ss_pred cCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Confidence 799999999999999765 36666654 45679999999999999886
No 6
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=1.9e-52 Score=389.17 Aligned_cols=340 Identities=34% Similarity=0.642 Sum_probs=252.2
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHh-CCCeEEEEeCccc-cccccCCCCCCCCeeEEEcCCCCCCCCCC-CcCCHHH
Q 036519 13 KLAHCLVLSYPAQGHMNPLLQFSKRLEH-NGIKVTLVTTYFI-SKSLHRDPSSSISIPLETISDGYDEGRSA-QAETDQA 89 (365)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~la~~L~~-~Gh~Vt~~~~~~~-~~~v~~~~~~~~gi~~~~l~~~~~~~~~~-~~~~~~~ 89 (365)
++.||+++|+|++||++|++.||+.|+. +|+.|||++++.+ ...+.+.....+++.|+.+++++++ +.. ...++..
T Consensus 2 ~~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~~~~~~~i~~~~i~dglp~-g~~~~~~~~~~ 80 (455)
T PLN02152 2 APPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPNHNNVENLSFLTFSDGFDD-GVISNTDDVQN 80 (455)
T ss_pred CCcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhccCCCCCCEEEEEcCCCCCC-ccccccccHHH
Confidence 3469999999999999999999999996 6999999999854 2222210111236999999988887 432 2345555
Q ss_pred HHHHHHHHhHHHHHHHHHhcC----CCcEEEEcCCCccHHHHHHHhCCceEEEecccHHHHHHHHHhhcccccCCCCCCc
Q 036519 90 YVDRFWQIGVQTLTELVERMN----DVDCIVYDSFLPWALDVAKKFGLTGAAFLTQSCTVASIYHYVNKGLIKLPLTGDQ 165 (365)
Q Consensus 90 ~~~~~~~~~~~~l~~ll~~~~----~pD~vv~D~~~~~a~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (365)
++..+...+.+.+.++++++. +++|||+|.+.+|+..+|+++|||++.|++++++..+.++..+... ...
T Consensus 81 ~~~~~~~~~~~~l~~~l~~l~~~~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~~------~~~ 154 (455)
T PLN02152 81 RLVNFERNGDKALSDFIEANLNGDSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTGN------NSV 154 (455)
T ss_pred HHHHHHHhccHHHHHHHHHhhccCCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhccC------CCe
Confidence 666666677778888887642 4599999999999999999999999999999999998887665321 134
Q ss_pred cccCCCCCCCCCCCCCccCCCCCchhHHHHHHHhhhhcccc--chhHhHhhHhhhhhhh---------------------
Q 036519 166 VFLPGLPPLDPQDTPSFINDPASYPAFFDMILTRQFSNIDK--ADWILCNTFYELEKEV--------------------- 222 (365)
Q Consensus 166 ~~~pg~p~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~--------------------- 222 (365)
+.+||+|++..+++|+++........+...+ ......... +..+++|+|.++|.++
T Consensus 155 ~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~v~~VGPL~~~~~~ 233 (455)
T PLN02152 155 FEFPNLPSLEIRDLPSFLSPSNTNKAAQAVY-QELMEFLKEESNPKILVNTFDSLEPEFLTAIPNIEMVAVGPLLPAEIF 233 (455)
T ss_pred eecCCCCCCchHHCchhhcCCCCchhHHHHH-HHHHHHhhhccCCEEEEeChHHhhHHHHHhhhcCCEEEEcccCccccc
Confidence 5699999898999998775322222111121 111111111 1233333333332221
Q ss_pred ------------------------------------------------------------hCchhh----------C---
Q 036519 223 ------------------------------------------------------------IKESEQ----------S--- 229 (365)
Q Consensus 223 ------------------------------------------------------------~~~~~~----------~--- 229 (365)
+|.... .
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flWv~r~~~~~~~~~~~~~~~ 313 (455)
T PLN02152 234 TGSESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWVITDKLNREAKIEGEEET 313 (455)
T ss_pred cccccCccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCeEEEEecCccccccccccccc
Confidence 443221 0
Q ss_pred --CCCcccccccCCCCeEEeecchhhhhcccccccccccCChhhHHHHHHcCCCeeeccccCchhhHHHHHHhHhcceeE
Q 036519 230 --KLPENFSDETTQKGLVVNWCPQLGVLAHEATGCFLTHCGWNSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVWKMGLK 307 (365)
Q Consensus 230 --~~p~~~~~~~~~~~~~~~~~p~~~~L~~~~~~~~I~hgG~gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~ 307 (365)
.+|++|.++.++|+++++|+||.+||+|+++++||||||+||++|++++|||+|++|++.||+.||+++++.||+|+.
T Consensus 314 ~~~~~~~f~e~~~~~g~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~ 393 (455)
T PLN02152 314 EIEKIAGFRHELEEVGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFPMWSDQPANAKLLEEIWKTGVR 393 (455)
T ss_pred ccccchhHHHhccCCeEEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEeccccccchHHHHHHHHHhCceEE
Confidence 135677777888999999999999999999999999999999999999999999999999999999999998889888
Q ss_pred ecCCCCCcccHHHHHHHHHHHhcCH--HHHHHHHH-------HHHcCCCcHHHHHHHHHHHH
Q 036519 308 VPADEKGIVRREAIAHCIGEILEGD--KWRNFAKE-------AVAKGGSSDKNIDDFVANLI 360 (365)
Q Consensus 308 ~~~~~~~~~~~~~l~~~i~~ll~~~--~~~~~a~~-------~~~~~g~s~~~~~~~~~~i~ 360 (365)
+..+.++..++++|+++|+++|+|+ ++|++|++ +..+||+|++++++||+.|+
T Consensus 394 ~~~~~~~~~~~e~l~~av~~vm~~~~~~~r~~a~~~~~~~~~a~~~ggsS~~nl~~li~~i~ 455 (455)
T PLN02152 394 VRENSEGLVERGEIRRCLEAVMEEKSVELRESAEKWKRLAIEAGGEGGSSDKNVEAFVKTLC 455 (455)
T ss_pred eecCcCCcCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhC
Confidence 8643233579999999999999765 46777743 35568999999999999874
No 7
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=3.2e-52 Score=391.42 Aligned_cols=349 Identities=26% Similarity=0.364 Sum_probs=248.2
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCccccccccCCCCCCCCeeEEEcC----CCCCCCCCCCcCCH
Q 036519 12 SKLAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLHRDPSSSISIPLETIS----DGYDEGRSAQAETD 87 (365)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~~~~~~~~gi~~~~l~----~~~~~~~~~~~~~~ 87 (365)
..++||+++|+|++||++|++.||+.|+.+|+.|||++|+.+..+++......+++.++.+| +++|+ +.+...++
T Consensus 7 ~~~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~~~~~i~~~~lp~P~~~~lPd-G~~~~~~~ 85 (477)
T PLN02863 7 PAGTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLSKHPSIETLVLPFPSHPSIPS-GVENVKDL 85 (477)
T ss_pred CCCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhcccCCCeeEEeCCCCCcCCCCC-CCcChhhc
Confidence 45789999999999999999999999999999999999998887766411122467887764 24555 43333222
Q ss_pred ----HHHHHHHHHHhHHHHHHHHHhcC-CCcEEEEcCCCccHHHHHHHhCCceEEEecccHHHHHHHHHhhcccccC---
Q 036519 88 ----QAYVDRFWQIGVQTLTELVERMN-DVDCIVYDSFLPWALDVAKKFGLTGAAFLTQSCTVASIYHYVNKGLIKL--- 159 (365)
Q Consensus 88 ----~~~~~~~~~~~~~~l~~ll~~~~-~pD~vv~D~~~~~a~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~--- 159 (365)
...+........+.+.+++.+.. +|+|||+|.+.+|+..+|+++|||++.|++++++.++.+++.+......
T Consensus 86 ~~~~~~~~~~a~~~~~~~~~~~l~~~~~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~~~~~~~~~ 165 (477)
T PLN02863 86 PPSGFPLMIHALGELYAPLLSWFRSHPSPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWREMPTKINP 165 (477)
T ss_pred chhhHHHHHHHHHHhHHHHHHHHHhCCCCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhhcccccccc
Confidence 12233333344556667777643 6799999999999999999999999999999999999988765432111
Q ss_pred CCCCCcc---ccCCCCCCCCCCCCCccCCCCCchhHHHHHHHhhhhccccchhHhHhhHhhhhhhh--------------
Q 036519 160 PLTGDQV---FLPGLPPLDPQDTPSFINDPASYPAFFDMILTRQFSNIDKADWILCNTFYELEKEV-------------- 222 (365)
Q Consensus 160 ~~~~~~~---~~pg~p~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------------- 222 (365)
.+....+ .+||+|.++..++|.+++.......+...+ .........+..+++|+|.++|..+
T Consensus 166 ~~~~~~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~-~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~~v~ 244 (477)
T PLN02863 166 DDQNEILSFSKIPNCPKYPWWQISSLYRSYVEGDPAWEFI-KDSFRANIASWGLVVNSFTELEGIYLEHLKKELGHDRVW 244 (477)
T ss_pred cccccccccCCCCCCCCcChHhCchhhhccCccchHHHHH-HHHHhhhccCCEEEEecHHHHHHHHHHHHHhhcCCCCeE
Confidence 1111222 478888888889987665321111122222 1211112222234444444443322
Q ss_pred -----------------------------------------------------------------------hCchh----
Q 036519 223 -----------------------------------------------------------------------IKESE---- 227 (365)
Q Consensus 223 -----------------------------------------------------------------------~~~~~---- 227 (365)
+|..+
T Consensus 245 ~IGPL~~~~~~~~~~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~flw~~~~~~~ 324 (477)
T PLN02863 245 AVGPILPLSGEKSGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEKSGVHFIWCVKEPVN 324 (477)
T ss_pred EeCCCcccccccccccccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHhCCCcEEEEECCCcc
Confidence 33221
Q ss_pred ----hCCCCcccccccCC-CCeEEeecchhhhhcccccccccccCChhhHHHHHHcCCCeeeccccCchhhHHHHHHhHh
Q 036519 228 ----QSKLPENFSDETTQ-KGLVVNWCPQLGVLAHEATGCFLTHCGWNSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVW 302 (365)
Q Consensus 228 ----~~~~p~~~~~~~~~-~~~~~~~~p~~~~L~~~~~~~~I~hgG~gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~~ 302 (365)
...+|+++.++..+ ++.+.+|+||.++|+|.++++||||||+||++||+++|||||++|++.||+.||+++++.|
T Consensus 325 ~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~ 404 (477)
T PLN02863 325 EESDYSNIPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPMAADQFVNASLLVDEL 404 (477)
T ss_pred cccchhhCCHHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeCCccccchhhHHHHHHhh
Confidence 11345555444333 3445589999999999999999999999999999999999999999999999999988766
Q ss_pred cceeEecCCCCCcccHHHHHHHHHHHh-cCHHHHHHHHHH-------HHcCCCcHHHHHHHHHHHHhc
Q 036519 303 KMGLKVPADEKGIVRREAIAHCIGEIL-EGDKWRNFAKEA-------VAKGGSSDKNIDDFVANLISS 362 (365)
Q Consensus 303 G~G~~~~~~~~~~~~~~~l~~~i~~ll-~~~~~~~~a~~~-------~~~~g~s~~~~~~~~~~i~~~ 362 (365)
|+|+++....++..+.+++.++|+++| ++++||+||+++ .++||||++++++||+.|++.
T Consensus 405 gvG~~~~~~~~~~~~~~~v~~~v~~~m~~~~~~r~~a~~l~e~a~~Av~~gGSS~~~l~~~v~~i~~~ 472 (477)
T PLN02863 405 KVAVRVCEGADTVPDSDELARVFMESVSENQVERERAKELRRAALDAIKERGSSVKDLDGFVKHVVEL 472 (477)
T ss_pred ceeEEeccCCCCCcCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHh
Confidence 999999643223578999999999999 677888888765 456899999999999999864
No 8
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=4.9e-52 Score=391.37 Aligned_cols=346 Identities=32% Similarity=0.559 Sum_probs=257.4
Q ss_pred ccCCCCcEEEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEeCccccccccCCCCCCCCeeEEEcCCCCCCCCCCCcCC
Q 036519 9 SASSKLAHCLVLSYPAQGHMNPLLQFSKRLEHN--GIKVTLVTTYFISKSLHRDPSSSISIPLETISDGYDEGRSAQAET 86 (365)
Q Consensus 9 ~~~~~~~~il~~~~~~~GH~~p~l~la~~L~~~--Gh~Vt~~~~~~~~~~v~~~~~~~~gi~~~~l~~~~~~~~~~~~~~ 86 (365)
+++..+.||+++|+|++||++|+++||++|+++ ||+|||++++.+.+.+++ .....++.|+.+|+++++ ......+
T Consensus 5 ~~~~~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~-~~~~~gi~fv~lp~~~p~-~~~~~~~ 82 (459)
T PLN02448 5 SSPTTSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGS-DPKPDNIRFATIPNVIPS-ELVRAAD 82 (459)
T ss_pred CCCCCCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhc-cCCCCCEEEEECCCCCCC-ccccccC
Confidence 456778999999999999999999999999999 999999999999887775 111247999999987776 3333345
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhcC-CCcEEEEcCCCccHHHHHHHhCCceEEEecccHHHHHHHHHhhc----ccccCCC
Q 036519 87 DQAYVDRFWQIGVQTLTELVERMN-DVDCIVYDSFLPWALDVAKKFGLTGAAFLTQSCTVASIYHYVNK----GLIKLPL 161 (365)
Q Consensus 87 ~~~~~~~~~~~~~~~l~~ll~~~~-~pD~vv~D~~~~~a~~~A~~~giP~v~~~~~~~~~~~~~~~~~~----~~~~~~~ 161 (365)
+..++..+.+.+...+.++++++. ++||||+|.++.|+..+|+++|||++.|++.++...+.+.+... +..+...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~~~~~~~~ 162 (459)
T PLN02448 83 FPGFLEAVMTKMEAPFEQLLDRLEPPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQNGHFPVEL 162 (459)
T ss_pred HHHHHHHHHHHhHHHHHHHHHhcCCCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhhccCCCCcc
Confidence 555556555566777888888763 67999999999999999999999999999999977776655421 1112111
Q ss_pred ---CCCcc-ccCCCCCCCCCCCCCccCCCCCchhHHHHHHHhhhhccccchhHhHhhHhhhhhhh---------------
Q 036519 162 ---TGDQV-FLPGLPPLDPQDTPSFINDPASYPAFFDMILTRQFSNIDKADWILCNTFYELEKEV--------------- 222 (365)
Q Consensus 162 ---~~~~~-~~pg~p~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------------- 222 (365)
....+ .+||++++...++|.++... ....+..+ ........++..+++|+|.++|..+
T Consensus 163 ~~~~~~~~~~iPg~~~l~~~dlp~~~~~~--~~~~~~~~-~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~~~~~~i 239 (459)
T PLN02448 163 SESGEERVDYIPGLSSTRLSDLPPIFHGN--SRRVLKRI-LEAFSWVPKAQYLLFTSFYELEAQAIDALKSKFPFPVYPI 239 (459)
T ss_pred ccccCCccccCCCCCCCChHHCchhhcCC--chHHHHHH-HHHHhhcccCCEEEEccHHHhhHHHHHHHHhhcCCceEEe
Confidence 01112 47888888888888766432 11222233 2323334444566666666666542
Q ss_pred -------------------------------------------------------------------hCchhhCCCCccc
Q 036519 223 -------------------------------------------------------------------IKESEQSKLPENF 235 (365)
Q Consensus 223 -------------------------------------------------------------------~~~~~~~~~p~~~ 235 (365)
+|.... ...++
T Consensus 240 GP~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw~~~~--~~~~~ 317 (459)
T PLN02448 240 GPSIPYMELKDNSSSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLWVARG--EASRL 317 (459)
T ss_pred cCcccccccCCCccccccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCEEEEEcC--chhhH
Confidence 111000 00112
Q ss_pred ccccCCCCeEEeecchhhhhcccccccccccCChhhHHHHHHcCCCeeeccccCchhhHHHHHHhHhcceeEecCC--CC
Q 036519 236 SDETTQKGLVVNWCPQLGVLAHEATGCFLTHCGWNSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVWKMGLKVPAD--EK 313 (365)
Q Consensus 236 ~~~~~~~~~~~~~~p~~~~L~~~~~~~~I~hgG~gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~~~~~--~~ 313 (365)
.+..++|+++++|+||.+||+|+++++||||||+||++||+++|||||++|++.||+.||+++++.||+|+.+... .+
T Consensus 318 ~~~~~~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~G~~~~~~~~~~ 397 (459)
T PLN02448 318 KEICGDMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIVEDWKIGWRVKREVGEE 397 (459)
T ss_pred hHhccCCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEEecccccC
Confidence 2222357888899999999999999999999999999999999999999999999999999999977999998642 12
Q ss_pred CcccHHHHHHHHHHHhcCH-----HHHHHHHHH-------HHcCCCcHHHHHHHHHHHHh
Q 036519 314 GIVRREAIAHCIGEILEGD-----KWRNFAKEA-------VAKGGSSDKNIDDFVANLIS 361 (365)
Q Consensus 314 ~~~~~~~l~~~i~~ll~~~-----~~~~~a~~~-------~~~~g~s~~~~~~~~~~i~~ 361 (365)
+.+++++|+++|+++|.|+ ++|++|+++ .++||||++++++|++.|++
T Consensus 398 ~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a~~~gGss~~~l~~~v~~~~~ 457 (459)
T PLN02448 398 TLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGAIAKGGSSDTNLDAFIRDISQ 457 (459)
T ss_pred CcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Confidence 3689999999999999752 576666554 55789999999999999874
No 9
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=1.2e-51 Score=384.02 Aligned_cols=335 Identities=21% Similarity=0.363 Sum_probs=248.5
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCccccccccCCCCCCCCeeEEEc--C--CCCCCCCCCCcCCH
Q 036519 12 SKLAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLHRDPSSSISIPLETI--S--DGYDEGRSAQAETD 87 (365)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~~~~~~~~gi~~~~l--~--~~~~~~~~~~~~~~ 87 (365)
+.++||+++|+|++||++|++.||+.|+++|++|||++++.+...+++......++.|..+ | +++|+ +.+...++
T Consensus 2 ~~~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~a~~~~i~~~~l~~p~~dgLp~-g~~~~~~l 80 (442)
T PLN02208 2 EPKFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHNLFPDSIVFHPLTIPPVNGLPA-GAETTSDI 80 (442)
T ss_pred CCCCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhcccCCCCceEEEEeCCCCccCCCC-Ccccccch
Confidence 4568999999999999999999999999999999999999888777641111234666655 3 45665 33322233
Q ss_pred H----HHHHHHHHHhHHHHHHHHHhcCCCcEEEEcCCCccHHHHHHHhCCceEEEecccHHHHHHHHHhhcccccCCCCC
Q 036519 88 Q----AYVDRFWQIGVQTLTELVERMNDVDCIVYDSFLPWALDVAKKFGLTGAAFLTQSCTVASIYHYVNKGLIKLPLTG 163 (365)
Q Consensus 88 ~----~~~~~~~~~~~~~l~~ll~~~~~pD~vv~D~~~~~a~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (365)
. .++........+.+++++++. +|||||+| ++.|+..+|+++|||++.|++++++... +++......
T Consensus 81 ~~~l~~~~~~~~~~~~~~l~~~L~~~-~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~~~~~------ 151 (442)
T PLN02208 81 PISMDNLLSEALDLTRDQVEAAVRAL-RPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVPGGKL------ 151 (442)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccCcccc------
Confidence 2 223333445666788888887 89999999 5789999999999999999999987654 333222111
Q ss_pred CccccCCCCC----CCCCCCCCccCCCCCchhHHHHHHHhhhhccccchhHhHhhHhhhhhhh-----------------
Q 036519 164 DQVFLPGLPP----LDPQDTPSFINDPASYPAFFDMILTRQFSNIDKADWILCNTFYELEKEV----------------- 222 (365)
Q Consensus 164 ~~~~~pg~p~----~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----------------- 222 (365)
...+||+|. ++..++|.+. .....+..+. ........+++.+++|+|.++|..+
T Consensus 152 -~~~~pglp~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~vl~Ntf~eLE~~~~~~~~~~~~~~v~~vGp 226 (442)
T PLN02208 152 -GVPPPGYPSSKVLFRENDAHALA---TLSIFYKRLY-HQITTGLKSCDVIALRTCKEIEGKFCDYISRQYHKKVLLTGP 226 (442)
T ss_pred -CCCCCCCCCcccccCHHHcCccc---ccchHHHHHH-HHHHhhhccCCEEEEECHHHHHHHHHHHHHhhcCCCEEEEee
Confidence 122578875 4566777541 1112222222 3333455567788899999998765
Q ss_pred -----------------------------------------------------------hCchh------hCCCCccccc
Q 036519 223 -----------------------------------------------------------IKESE------QSKLPENFSD 237 (365)
Q Consensus 223 -----------------------------------------------------------~~~~~------~~~~p~~~~~ 237 (365)
++... .+.+|++|.+
T Consensus 227 l~~~~~~~~~~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf~wv~r~~~~~~~~~~~lp~~f~~ 306 (442)
T PLN02208 227 MFPEPDTSKPLEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPFLIAVKPPRGSSTVQEGLPEGFEE 306 (442)
T ss_pred cccCcCCCCCCHHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEEeCCCcccchhhhCCHHHHH
Confidence 22211 1246777766
Q ss_pred ccCC-CCeEEeecchhhhhcccccccccccCChhhHHHHHHcCCCeeeccccCchhhHHHHHHhHhcceeEecCCCCCcc
Q 036519 238 ETTQ-KGLVVNWCPQLGVLAHEATGCFLTHCGWNSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVWKMGLKVPADEKGIV 316 (365)
Q Consensus 238 ~~~~-~~~~~~~~p~~~~L~~~~~~~~I~hgG~gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~ 316 (365)
+..+ |+.+.+|+||.+||+|+++++||||||+||++|++++|||||++|+++||+.||+++++.||+|+.+....++.+
T Consensus 307 r~~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~ 386 (442)
T PLN02208 307 RVKGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEEFEVSVEVSREKTGWF 386 (442)
T ss_pred HHhcCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcchhhHHHHHHHHHHhceeEEeccccCCcC
Confidence 6554 445558999999999999999999999999999999999999999999999999998875599999986522359
Q ss_pred cHHHHHHHHHHHhcCH-----HHHHHHHHH---HHcCCCcHHHHHHHHHHHHh
Q 036519 317 RREAIAHCIGEILEGD-----KWRNFAKEA---VAKGGSSDKNIDDFVANLIS 361 (365)
Q Consensus 317 ~~~~l~~~i~~ll~~~-----~~~~~a~~~---~~~~g~s~~~~~~~~~~i~~ 361 (365)
++++|.++|+++|+|+ ++|++++++ +.++|||++++++||+.+++
T Consensus 387 ~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~~~gsS~~~l~~~v~~l~~ 439 (442)
T PLN02208 387 SKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILVSPGLLTGYVDKFVEELQE 439 (442)
T ss_pred cHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 9999999999999754 488888876 34589999999999999864
No 10
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=4.7e-51 Score=386.09 Aligned_cols=342 Identities=28% Similarity=0.413 Sum_probs=250.5
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCC--CeEEEEeCccccccc-------cCC-CCCCCCeeEEEcCCCCCCCCCCC
Q 036519 14 LAHCLVLSYPAQGHMNPLLQFSKRLEHNG--IKVTLVTTYFISKSL-------HRD-PSSSISIPLETISDGYDEGRSAQ 83 (365)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~la~~L~~~G--h~Vt~~~~~~~~~~v-------~~~-~~~~~gi~~~~l~~~~~~~~~~~ 83 (365)
++||+++|+|++||++|++.||+.|+.+| ..|||++++.+...+ .+. ....+++.|+.+|++.+. ...
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~-~~~- 79 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQP-TTE- 79 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCCC-ccc-
Confidence 68999999999999999999999999998 889999998775421 110 001236999999876543 111
Q ss_pred cCCHHHHHHHHHHHhHHHHHHHHHhcC----C-CcEEEEcCCCccHHHHHHHhCCceEEEecccHHHHHHHHHhhccc--
Q 036519 84 AETDQAYVDRFWQIGVQTLTELVERMN----D-VDCIVYDSFLPWALDVAKKFGLTGAAFLTQSCTVASIYHYVNKGL-- 156 (365)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~l~~ll~~~~----~-pD~vv~D~~~~~a~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~-- 156 (365)
...+..++..+...+.+.+++++.... + ++|||+|.+++|+..+|+++|||++.|++++++.++.+++.....
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~~~~~~~~ 159 (481)
T PLN02554 80 DPTFQSYIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLHVQMLYDE 159 (481)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHhhhhhccc
Confidence 113334444455555555666654321 2 389999999999999999999999999999999998887754321
Q ss_pred --ccCC---CCCCccccCCCC-CCCCCCCCCccCCCCCchhHHHHHHHhhhhccccchhHhHhhHhhhhhhh--------
Q 036519 157 --IKLP---LTGDQVFLPGLP-PLDPQDTPSFINDPASYPAFFDMILTRQFSNIDKADWILCNTFYELEKEV-------- 222 (365)
Q Consensus 157 --~~~~---~~~~~~~~pg~p-~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------- 222 (365)
.+++ +...++.+||++ +++..++|.++... .++..+ ........+++.+++|+|.+++.++
T Consensus 160 ~~~~~~~~~~~~~~v~iPgl~~pl~~~dlp~~~~~~----~~~~~~-~~~~~~~~~~~gvlvNt~~eLe~~~~~~l~~~~ 234 (481)
T PLN02554 160 KKYDVSELEDSEVELDVPSLTRPYPVKCLPSVLLSK----EWLPLF-LAQARRFREMKGILVNTVAELEPQALKFFSGSS 234 (481)
T ss_pred cccCccccCCCCceeECCCCCCCCCHHHCCCcccCH----HHHHHH-HHHHHhcccCCEEEEechHHHhHHHHHHHHhcc
Confidence 1211 111346789985 78888888765421 112222 2222333344455555555554422
Q ss_pred ------------------------------------------------------------------------hCchhh--
Q 036519 223 ------------------------------------------------------------------------IKESEQ-- 228 (365)
Q Consensus 223 ------------------------------------------------------------------------~~~~~~-- 228 (365)
+|....
T Consensus 235 ~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la~~l~~~~~~flW~~~~~~ 314 (481)
T PLN02554 235 GDLPPVYPVGPVLHLENSGDDSKDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIAIALERSGHRFLWSLRRAS 314 (481)
T ss_pred cCCCCEEEeCCCccccccccccccccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHHcCCCeEEEEcCCc
Confidence 443221
Q ss_pred ---------------CCCCcccccccCCCCeEEeecchhhhhcccccccccccCChhhHHHHHHcCCCeeeccccCchhh
Q 036519 229 ---------------SKLPENFSDETTQKGLVVNWCPQLGVLAHEATGCFLTHCGWNSTIEALRLGVPMLAMPLWTDQST 293 (365)
Q Consensus 229 ---------------~~~p~~~~~~~~~~~~~~~~~p~~~~L~~~~~~~~I~hgG~gs~~eal~~GvP~v~~P~~~DQ~~ 293 (365)
..+|++|.++.++|+++++|+||.+||.|.++++||||||+||++|++++|||||++|+++||+.
T Consensus 315 ~~~~~~~~~~~~~~~~~lp~~~~~r~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~~GVP~l~~P~~~DQ~~ 394 (481)
T PLN02554 315 PNIMKEPPGEFTNLEEILPEGFLDRTKDIGKVIGWAPQVAVLAKPAIGGFVTHCGWNSILESLWFGVPMAAWPLYAEQKF 394 (481)
T ss_pred ccccccccccccchhhhCChHHHHHhccCceEEeeCCHHHHhCCcccCcccccCccchHHHHHHcCCCEEecCccccchh
Confidence 12577887778899999999999999999999999999999999999999999999999999999
Q ss_pred HHHH-HHhHhcceeEecCC--------CCCcccHHHHHHHHHHHhc-CHHHHHHHHHH-------HHcCCCcHHHHHHHH
Q 036519 294 NSKY-VMDVWKMGLKVPAD--------EKGIVRREAIAHCIGEILE-GDKWRNFAKEA-------VAKGGSSDKNIDDFV 356 (365)
Q Consensus 294 nA~~-v~~~~G~G~~~~~~--------~~~~~~~~~l~~~i~~ll~-~~~~~~~a~~~-------~~~~g~s~~~~~~~~ 356 (365)
||++ +++. |+|+.+... .++.+++++|+++|+++|+ |++||++|+++ .++||+|++++++||
T Consensus 395 Na~~~v~~~-g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~r~~a~~l~~~~~~av~~gGss~~~l~~lv 473 (481)
T PLN02554 395 NAFEMVEEL-GLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQDSDVRKRVKEMSEKCHVALMDGGSSHTALKKFI 473 (481)
T ss_pred hHHHHHHHh-CceEEeeccccccccccccCeEcHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 9955 6666 999998631 1236899999999999996 78898888765 356899999999999
Q ss_pred HHHHhcc
Q 036519 357 ANLISSK 363 (365)
Q Consensus 357 ~~i~~~~ 363 (365)
+.|+++.
T Consensus 474 ~~~~~~~ 480 (481)
T PLN02554 474 QDVTKNI 480 (481)
T ss_pred HHHHhhC
Confidence 9998763
No 11
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=8.1e-51 Score=379.74 Aligned_cols=339 Identities=26% Similarity=0.424 Sum_probs=249.9
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHH-hCCCeEEEEeCccccccccCCCCCCCCeeEEEcCC----CCCCCCCCCcCCHH
Q 036519 14 LAHCLVLSYPAQGHMNPLLQFSKRLE-HNGIKVTLVTTYFISKSLHRDPSSSISIPLETISD----GYDEGRSAQAETDQ 88 (365)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~la~~L~-~~Gh~Vt~~~~~~~~~~v~~~~~~~~gi~~~~l~~----~~~~~~~~~~~~~~ 88 (365)
+.||+++|+|++||++|++.||+.|+ ++|++|||++++.+...+.+......++.++.+|. ++++ ...+..
T Consensus 5 ~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~~~~~i~~~~lp~p~~~glp~----~~~~~~ 80 (481)
T PLN02992 5 KPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFLNSTGVDIVGLPSPDISGLVD----PSAHVV 80 (481)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhccccCCCceEEECCCccccCCCC----CCccHH
Confidence 46999999999999999999999998 68999999999987655532011113689999984 3331 111222
Q ss_pred HHHHHHHHHhHHHHHHHHHhcC-CCcEEEEcCCCccHHHHHHHhCCceEEEecccHHHHHHHHHhh--cccccCC--CCC
Q 036519 89 AYVDRFWQIGVQTLTELVERMN-DVDCIVYDSFLPWALDVAKKFGLTGAAFLTQSCTVASIYHYVN--KGLIKLP--LTG 163 (365)
Q Consensus 89 ~~~~~~~~~~~~~l~~ll~~~~-~pD~vv~D~~~~~a~~~A~~~giP~v~~~~~~~~~~~~~~~~~--~~~~~~~--~~~ 163 (365)
..+..+...+.+.+++++++.. +|+|||+|.+++|+..+|+++|||++.|+++++..++.+.+.. ....... ...
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~~~~~~~~~~ 160 (481)
T PLN02992 81 TKIGVIMREAVPTLRSKIAEMHQKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDKDIKEEHTVQR 160 (481)
T ss_pred HHHHHHHHHhHHHHHHHHHhcCCCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhccccccccccCC
Confidence 2333344455667888887753 7899999999999999999999999999999998877655432 1211110 111
Q ss_pred CccccCCCCCCCCCCCCCccCCCCCchhHHHHHHHhhhhccccchhHhHhhHhhhhhhh---------------------
Q 036519 164 DQVFLPGLPPLDPQDTPSFINDPASYPAFFDMILTRQFSNIDKADWILCNTFYELEKEV--------------------- 222 (365)
Q Consensus 164 ~~~~~pg~p~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------------------- 222 (365)
.++.+||+|+++..++|..+..+.. . .+..+ ........+++.+++|+|.+||..+
T Consensus 161 ~~~~iPg~~~l~~~dlp~~~~~~~~-~-~~~~~-~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~~~~~~~~~~~~v~~V 237 (481)
T PLN02992 161 KPLAMPGCEPVRFEDTLDAYLVPDE-P-VYRDF-VRHGLAYPKADGILVNTWEEMEPKSLKSLQDPKLLGRVARVPVYPI 237 (481)
T ss_pred CCcccCCCCccCHHHhhHhhcCCCc-H-HHHHH-HHHHHhcccCCEEEEechHHHhHHHHHHHhhccccccccCCceEEe
Confidence 3456899998888899864433221 2 22333 3333445556677777777776421
Q ss_pred ----------------------------------------------------------hCchh-----------------
Q 036519 223 ----------------------------------------------------------IKESE----------------- 227 (365)
Q Consensus 223 ----------------------------------------------------------~~~~~----------------- 227 (365)
+|...
T Consensus 238 GPl~~~~~~~~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW~~r~~~~~~~~~~~~~~~~~ 317 (481)
T PLN02992 238 GPLCRPIQSSKTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVWVVRPPVDGSACSAYFSANGG 317 (481)
T ss_pred cCccCCcCCCcchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCEEEEEeCCcccccccccccCccc
Confidence 44331
Q ss_pred ------hCCCCcccccccCCCCeEE-eecchhhhhcccccccccccCChhhHHHHHHcCCCeeeccccCchhhHHHHHH-
Q 036519 228 ------QSKLPENFSDETTQKGLVV-NWCPQLGVLAHEATGCFLTHCGWNSTIEALRLGVPMLAMPLWTDQSTNSKYVM- 299 (365)
Q Consensus 228 ------~~~~p~~~~~~~~~~~~~~-~~~p~~~~L~~~~~~~~I~hgG~gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~- 299 (365)
.+.+|++|.++..++..++ +|+||.+||+|+++++||||||+||++|++++|||||++|++.||+.||++++
T Consensus 318 ~~~~~~~~~lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~~~~ 397 (481)
T PLN02992 318 ETRDNTPEYLPEGFVSRTHDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLESVVGGVPMIAWPLFAEQNMNAALLSD 397 (481)
T ss_pred ccccchhhhCCHHHHHHhcCCCEEEeecCCHHHHhCCcccCeeEecCchhHHHHHHHcCCCEEecCccchhHHHHHHHHH
Confidence 0136777777777666554 89999999999999999999999999999999999999999999999999996
Q ss_pred hHhcceeEecCCCCCcccHHHHHHHHHHHhcCH---HHHHHHH-------HHH--HcCCCcHHHHHHHHHHHHh
Q 036519 300 DVWKMGLKVPADEKGIVRREAIAHCIGEILEGD---KWRNFAK-------EAV--AKGGSSDKNIDDFVANLIS 361 (365)
Q Consensus 300 ~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~---~~~~~a~-------~~~--~~~g~s~~~~~~~~~~i~~ 361 (365)
+. |+|+.++.. ++.++.++|+++|+++|.|+ ++|++++ ++. ++||||++++++|++.+.+
T Consensus 398 ~~-g~gv~~~~~-~~~~~~~~l~~av~~vm~~~~g~~~r~~a~~~~~~a~~Av~~~~GGSS~~~l~~~v~~~~~ 469 (481)
T PLN02992 398 EL-GIAVRSDDP-KEVISRSKIEALVRKVMVEEEGEEMRRKVKKLRDTAEMSLSIDGGGVAHESLCRVTKECQR 469 (481)
T ss_pred Hh-CeeEEecCC-CCcccHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHH
Confidence 55 999999853 23699999999999999763 4555554 445 3489999999999998864
No 12
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=1.5e-50 Score=377.25 Aligned_cols=344 Identities=25% Similarity=0.442 Sum_probs=247.7
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhCC--CeEEEEeCcccc-ccccC----CCCCCCCeeEEEcCCCCCCCCCCCcC
Q 036519 13 KLAHCLVLSYPAQGHMNPLLQFSKRLEHNG--IKVTLVTTYFIS-KSLHR----DPSSSISIPLETISDGYDEGRSAQAE 85 (365)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~la~~L~~~G--h~Vt~~~~~~~~-~~v~~----~~~~~~gi~~~~l~~~~~~~~~~~~~ 85 (365)
++.||+|+|+|++||++|++.||+.|+.+| ..|||++++.+. ..+.. .....+++.|+.+|+...........
T Consensus 2 ~~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~~ 81 (468)
T PLN02207 2 RNAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPELEEKPTLGGTQ 81 (468)
T ss_pred CCcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCCCCCCcccccc
Confidence 457999999999999999999999999998 999999998764 22211 00112469999999643210101122
Q ss_pred CHHHHHHHHHHHh----HHHHHHHHHhcC---C-CcEEEEcCCCccHHHHHHHhCCceEEEecccHHHHHHHHHhhcccc
Q 036519 86 TDQAYVDRFWQIG----VQTLTELVERMN---D-VDCIVYDSFLPWALDVAKKFGLTGAAFLTQSCTVASIYHYVNKGLI 157 (365)
Q Consensus 86 ~~~~~~~~~~~~~----~~~l~~ll~~~~---~-pD~vv~D~~~~~a~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~ 157 (365)
+...++..+.... .+.+.+++++.. + ++|||+|.+++|+..+|+++|||.+.|+++++...+.+++......
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~~~~~~~~ 161 (468)
T PLN02207 82 SVEAYVYDVIEKNIPLVRNIVMDILSSLALDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQYLADRHS 161 (468)
T ss_pred CHHHHHHHHHHhcchhHHHHHHHHHHHhccCCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHHHhhhccc
Confidence 3443333333333 445666666431 3 4899999999999999999999999999999988887765532211
Q ss_pred c-----CCCCCCccccCCC-CCCCCCCCCCccCCCCCchhHHHHHHHhhhhccccchhHhHhhHhhhhhh----------
Q 036519 158 K-----LPLTGDQVFLPGL-PPLDPQDTPSFINDPASYPAFFDMILTRQFSNIDKADWILCNTFYELEKE---------- 221 (365)
Q Consensus 158 ~-----~~~~~~~~~~pg~-p~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---------- 221 (365)
+ ++..+..+.+||+ |++...++|.++....... .+ ........+++.+++|+|.++|..
T Consensus 162 ~~~~~~~~~~~~~~~vPgl~~~l~~~dlp~~~~~~~~~~----~~-~~~~~~~~~~~~vlvNtf~~LE~~~~~~~~~~~~ 236 (468)
T PLN02207 162 KDTSVFVRNSEEMLSIPGFVNPVPANVLPSALFVEDGYD----AY-VKLAILFTKANGILVNSSFDIEPYSVNHFLDEQN 236 (468)
T ss_pred cccccCcCCCCCeEECCCCCCCCChHHCcchhcCCccHH----HH-HHHHHhcccCCEEEEEchHHHhHHHHHHHHhccC
Confidence 1 1111234678999 6899999998764322111 11 111122333334444444444432
Q ss_pred ----------------------------------------------------------------------hhCchh----
Q 036519 222 ----------------------------------------------------------------------VIKESE---- 227 (365)
Q Consensus 222 ----------------------------------------------------------------------~~~~~~---- 227 (365)
++|...
T Consensus 237 ~p~v~~VGPl~~~~~~~~~~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~~flW~~r~~~~ 316 (468)
T PLN02207 237 YPSVYAVGPIFDLKAQPHPEQDLARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLELCQYRFLWSLRTEEV 316 (468)
T ss_pred CCcEEEecCCcccccCCCCccccchhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHHHCCCcEEEEEeCCCc
Confidence 144432
Q ss_pred --hCCCCcccccccCCCCeEEeecchhhhhcccccccccccCChhhHHHHHHcCCCeeeccccCchhhHHHHHHhHhcce
Q 036519 228 --QSKLPENFSDETTQKGLVVNWCPQLGVLAHEATGCFLTHCGWNSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVWKMG 305 (365)
Q Consensus 228 --~~~~p~~~~~~~~~~~~~~~~~p~~~~L~~~~~~~~I~hgG~gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~~G~G 305 (365)
.+.+|++|.++.++|+++++|+||.+||+|+++++||||||+||++||+++|||||++|+++||+.||+++++.||+|
T Consensus 317 ~~~~~lp~~f~er~~~~g~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvG 396 (468)
T PLN02207 317 TNDDLLPEGFLDRVSGRGMICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMYAEQQLNAFLMVKELKLA 396 (468)
T ss_pred cccccCCHHHHhhcCCCeEEEEeCCHHHHhcccccceeeecCccccHHHHHHcCCCEEecCccccchhhHHHHHHHhCce
Confidence 234778888888899999999999999999999999999999999999999999999999999999999988866999
Q ss_pred eEecCC----CCCcccHHHHHHHHHHHhc--CHHHHHHHHHH-------HHcCCCcHHHHHHHHHHHHh
Q 036519 306 LKVPAD----EKGIVRREAIAHCIGEILE--GDKWRNFAKEA-------VAKGGSSDKNIDDFVANLIS 361 (365)
Q Consensus 306 ~~~~~~----~~~~~~~~~l~~~i~~ll~--~~~~~~~a~~~-------~~~~g~s~~~~~~~~~~i~~ 361 (365)
+++..+ .++..++++|+++|+++|+ +++||+||+++ .++||||++++++||+.+..
T Consensus 397 v~~~~~~~~~~~~~v~~e~i~~av~~vm~~~~~~~r~~a~~l~~~a~~A~~~GGSS~~~l~~~v~~~~~ 465 (468)
T PLN02207 397 VELKLDYRVHSDEIVNANEIETAIRCVMNKDNNVVRKRVMDISQMIQRATKNGGSSFAAIEKFIHDVIG 465 (468)
T ss_pred EEEecccccccCCcccHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh
Confidence 987421 1225699999999999997 57888888764 45689999999999999875
No 13
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=1.6e-50 Score=374.52 Aligned_cols=338 Identities=24% Similarity=0.388 Sum_probs=253.3
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCccccccccCCCCC-C--CCeeEEEcC--CCCCCCCCCCcCC
Q 036519 12 SKLAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLHRDPSS-S--ISIPLETIS--DGYDEGRSAQAET 86 (365)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~~~~~~-~--~gi~~~~l~--~~~~~~~~~~~~~ 86 (365)
+-++||+++|+|++||++|++.||+.|+.+|+.|||++++.+...+.. ... . ..+.++++| +++|+ +.+...+
T Consensus 3 ~~~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~-~~~~~~~~~v~~~~~p~~~glp~-g~e~~~~ 80 (453)
T PLN02764 3 GLKFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEH-LNLFPHNIVFRSVTVPHVDGLPV-GTETVSE 80 (453)
T ss_pred CCCcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhcc-cccCCCCceEEEEECCCcCCCCC-ccccccc
Confidence 346899999999999999999999999999999999999988766553 111 1 126777777 67776 4333222
Q ss_pred HH----HHHHHHHHHhHHHHHHHHHhcCCCcEEEEcCCCccHHHHHHHhCCceEEEecccHHHHHHHHHhhcccccCCCC
Q 036519 87 DQ----AYVDRFWQIGVQTLTELVERMNDVDCIVYDSFLPWALDVAKKFGLTGAAFLTQSCTVASIYHYVNKGLIKLPLT 162 (365)
Q Consensus 87 ~~----~~~~~~~~~~~~~l~~ll~~~~~pD~vv~D~~~~~a~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (365)
+. ..+........+.+.++++.. +|||||+|+ +.|+..+|+++|||++.|+++++..++.+.. ..+..
T Consensus 81 ~~~~~~~~~~~a~~~~~~~~~~~l~~~-~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~-~~~~~----- 152 (453)
T PLN02764 81 IPVTSADLLMSAMDLTRDQVEVVVRAV-EPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLV-PGGEL----- 152 (453)
T ss_pred CChhHHHHHHHHHHHhHHHHHHHHHhC-CCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhc-ccccC-----
Confidence 21 223334445567888899887 899999995 8999999999999999999999988877753 11111
Q ss_pred CCccccCCCCC----CCCCCCCCccCCC--CCchhHHHHHHHhhhhccccchhHhHhhHhhhhhhh--------------
Q 036519 163 GDQVFLPGLPP----LDPQDTPSFINDP--ASYPAFFDMILTRQFSNIDKADWILCNTFYELEKEV-------------- 222 (365)
Q Consensus 163 ~~~~~~pg~p~----~~~~~lp~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------------- 222 (365)
...+||+|. ++..++|.+.... ........++ ........++..+++|+|.++|..+
T Consensus 153 --~~~~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~vlvNTf~eLE~~~~~~~~~~~~~~v~~ 229 (453)
T PLN02764 153 --GVPPPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLL-ERVTTSLMNSDVIAIRTAREIEGNFCDYIEKHCRKKVLL 229 (453)
T ss_pred --CCCCCCCCCCcccCcHhhCcchhhcCCCccchhHHHHH-HHHHHhhccCCEEEEeccHHhhHHHHHHHHhhcCCcEEE
Confidence 122478873 5667777643311 1111222333 3333445556677788888776543
Q ss_pred ------------------------------------------------------------hCchh--------hCCCCcc
Q 036519 223 ------------------------------------------------------------IKESE--------QSKLPEN 234 (365)
Q Consensus 223 ------------------------------------------------------------~~~~~--------~~~~p~~ 234 (365)
+|... .+.+|++
T Consensus 230 VGPL~~~~~~~~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~r~~~~~~~~~~~lp~~ 309 (453)
T PLN02764 230 TGPVFPEPDKTRELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAVKPPRGSSTIQEALPEG 309 (453)
T ss_pred eccCccCccccccchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEEeCCCCCcchhhhCCcc
Confidence 11111 2358889
Q ss_pred cccccCCCCeEE-eecchhhhhcccccccccccCChhhHHHHHHcCCCeeeccccCchhhHHHHHHhHhcceeEecCCCC
Q 036519 235 FSDETTQKGLVV-NWCPQLGVLAHEATGCFLTHCGWNSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVWKMGLKVPADEK 313 (365)
Q Consensus 235 ~~~~~~~~~~~~-~~~p~~~~L~~~~~~~~I~hgG~gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~ 313 (365)
|.++..++..++ +|+||.+||+|+++++||||||+||++|++++|||||++|++.||+.||+++++.||+|+.+..++.
T Consensus 310 f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~l~~~~g~gv~~~~~~~ 389 (453)
T PLN02764 310 FEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQVLNTRLLSDELKVSVEVAREET 389 (453)
T ss_pred hHhhhccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcccchHHHHHHHHHHhceEEEeccccC
Confidence 988887777666 8999999999999999999999999999999999999999999999999999765599999864312
Q ss_pred CcccHHHHHHHHHHHhcCH-----HHHHHHHHH---HHcCCCcHHHHHHHHHHHHhc
Q 036519 314 GIVRREAIAHCIGEILEGD-----KWRNFAKEA---VAKGGSSDKNIDDFVANLISS 362 (365)
Q Consensus 314 ~~~~~~~l~~~i~~ll~~~-----~~~~~a~~~---~~~~g~s~~~~~~~~~~i~~~ 362 (365)
+.+++++|+++|+++|+++ ++|++++++ ++++|||++++++||+.+.+.
T Consensus 390 ~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~~~~GSS~~~l~~lv~~~~~~ 446 (453)
T PLN02764 390 GWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETLASPGLLTGYVDNFIESLQDL 446 (453)
T ss_pred CccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 3689999999999999763 488888765 557899999999999999875
No 14
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=1.9e-50 Score=380.54 Aligned_cols=344 Identities=25% Similarity=0.404 Sum_probs=253.0
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhCC----CeEEEEeCccccc----cccC----CCCCCCCeeEEEcCCCCCCCC
Q 036519 13 KLAHCLVLSYPAQGHMNPLLQFSKRLEHNG----IKVTLVTTYFISK----SLHR----DPSSSISIPLETISDGYDEGR 80 (365)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~la~~L~~~G----h~Vt~~~~~~~~~----~v~~----~~~~~~gi~~~~l~~~~~~~~ 80 (365)
++.||+|+|+|++||++|++.||+.|+.+| +.|||++++.+.. .+.. ......++.|+.+|++.++.+
T Consensus 2 ~~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~~ 81 (480)
T PLN00164 2 AAPTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAVEPPTD 81 (480)
T ss_pred CCCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCCCCCCc
Confidence 456999999999999999999999999986 7999999876432 2221 001112699999986543212
Q ss_pred CCCcCCHHHHHHHHHHHhHHHHHHHHHhcC-CCcEEEEcCCCccHHHHHHHhCCceEEEecccHHHHHHHHHhhcc--cc
Q 036519 81 SAQAETDQAYVDRFWQIGVQTLTELVERMN-DVDCIVYDSFLPWALDVAKKFGLTGAAFLTQSCTVASIYHYVNKG--LI 157 (365)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~-~pD~vv~D~~~~~a~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~--~~ 157 (365)
. .+...++..+...+.+.++++++++. +++|||+|.+++|+..+|+++|||++.|+++++..++.+++.... ..
T Consensus 82 ~---e~~~~~~~~~~~~~~~~l~~~L~~l~~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~~ 158 (480)
T PLN00164 82 A---AGVEEFISRYIQLHAPHVRAAIAGLSCPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALMLRLPALDEEV 158 (480)
T ss_pred c---ccHHHHHHHHHHhhhHHHHHHHHhcCCCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHhhhhhhcccc
Confidence 1 23445555566677778888888764 469999999999999999999999999999999988887765321 11
Q ss_pred c--CCCCCCccccCCCCCCCCCCCCCccCCCCCchhHHHHHHHhhhhccccchhHhHhhHhhhhhhh-------------
Q 036519 158 K--LPLTGDQVFLPGLPPLDPQDTPSFINDPASYPAFFDMILTRQFSNIDKADWILCNTFYELEKEV------------- 222 (365)
Q Consensus 158 ~--~~~~~~~~~~pg~p~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------------- 222 (365)
+ .+....++.+||+|+++..++|.++..... . .+..+ ........+++.+++|+|.++|.++
T Consensus 159 ~~~~~~~~~~~~iPGlp~l~~~dlp~~~~~~~~-~-~~~~~-~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~~~ 235 (480)
T PLN00164 159 AVEFEEMEGAVDVPGLPPVPASSLPAPVMDKKS-P-NYAWF-VYHGRRFMEAAGIIVNTAAELEPGVLAAIADGRCTPGR 235 (480)
T ss_pred cCcccccCcceecCCCCCCChHHCCchhcCCCc-H-HHHHH-HHHHHhhhhcCEEEEechHHhhHHHHHHHHhccccccC
Confidence 1 111113456999999999999987653221 1 11222 2222344556667777777775432
Q ss_pred ---------------------------------------------------------------------hCchhh-----
Q 036519 223 ---------------------------------------------------------------------IKESEQ----- 228 (365)
Q Consensus 223 ---------------------------------------------------------------------~~~~~~----- 228 (365)
+|....
T Consensus 236 ~~~~v~~vGPl~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL~~s~~~flWv~~~~~~~~ 315 (480)
T PLN00164 236 PAPTVYPIGPVISLAFTPPAEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAAGLERSGHRFLWVLRGPPAAG 315 (480)
T ss_pred CCCceEEeCCCccccccCCCccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCEEEEEcCCcccc
Confidence 322211
Q ss_pred ----------CCCCcccccccCCCCeEE-eecchhhhhcccccccccccCChhhHHHHHHcCCCeeeccccCchhhHHHH
Q 036519 229 ----------SKLPENFSDETTQKGLVV-NWCPQLGVLAHEATGCFLTHCGWNSTIEALRLGVPMLAMPLWTDQSTNSKY 297 (365)
Q Consensus 229 ----------~~~p~~~~~~~~~~~~~~-~~~p~~~~L~~~~~~~~I~hgG~gs~~eal~~GvP~v~~P~~~DQ~~nA~~ 297 (365)
..+|+++.++..++..++ +|+||.+||+|+++++||||||+||++|++++|||||++|+++||+.||++
T Consensus 316 ~~~~~~~~~~~~lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~ 395 (480)
T PLN00164 316 SRHPTDADLDELLPEGFLERTKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMAPWPLYAEQHLNAFE 395 (480)
T ss_pred cccccccchhhhCChHHHHHhcCCCeEEeecCCHHHHhcCcccCeEEeecccchHHHHHHcCCCEEeCCccccchhHHHH
Confidence 125666666666666666 899999999999999999999999999999999999999999999999998
Q ss_pred HHhHhcceeEecCCC--CCcccHHHHHHHHHHHhcCH-----HHHHHHHHH-------HHcCCCcHHHHHHHHHHHHhc
Q 036519 298 VMDVWKMGLKVPADE--KGIVRREAIAHCIGEILEGD-----KWRNFAKEA-------VAKGGSSDKNIDDFVANLISS 362 (365)
Q Consensus 298 v~~~~G~G~~~~~~~--~~~~~~~~l~~~i~~ll~~~-----~~~~~a~~~-------~~~~g~s~~~~~~~~~~i~~~ 362 (365)
+++.||+|+.+.... ++.+++++|.++|+++|.|+ .+|++|+++ .++||||++++++||+.|.+.
T Consensus 396 ~~~~~gvG~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~~~~~~~~a~~~gGSS~~~l~~~v~~~~~~ 474 (480)
T PLN00164 396 LVADMGVAVAMKVDRKRDNFVEAAELERAVRSLMGGGEEEGRKAREKAAEMKAACRKAVEEGGSSYAALQRLAREIRHG 474 (480)
T ss_pred HHHHhCeEEEeccccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhc
Confidence 876569999986431 23579999999999999652 356666554 456899999999999999865
No 15
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=1.7e-50 Score=377.19 Aligned_cols=349 Identities=24% Similarity=0.401 Sum_probs=250.5
Q ss_pred cCCCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCccccccccCC-CCCCCCeeEEEcC----CCCCCCCCCCc
Q 036519 10 ASSKLAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLHRD-PSSSISIPLETIS----DGYDEGRSAQA 84 (365)
Q Consensus 10 ~~~~~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~~~-~~~~~gi~~~~l~----~~~~~~~~~~~ 84 (365)
+.+.+.||+++|+|++||++|++.||+.|+.+|+.|||++++.+...+.+. .....++.|+.+| +++|+ +.+..
T Consensus 2 ~~~~~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~i~~~~lp~p~~dglp~-~~~~~ 80 (472)
T PLN02670 2 KREEVLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPSQLSSSITLVSFPLPSVPGLPS-SAESS 80 (472)
T ss_pred CCCCCcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhccccCCCCeeEEECCCCccCCCCC-Ccccc
Confidence 345567999999999999999999999999999999999999887665531 0112468999998 66775 33333
Q ss_pred CCHH----HHHHHHHHHhHHHHHHHHHhcCCCcEEEEcCCCccHHHHHHHhCCceEEEecccHHHHHHHHHhhc--cccc
Q 036519 85 ETDQ----AYVDRFWQIGVQTLTELVERMNDVDCIVYDSFLPWALDVAKKFGLTGAAFLTQSCTVASIYHYVNK--GLIK 158 (365)
Q Consensus 85 ~~~~----~~~~~~~~~~~~~l~~ll~~~~~pD~vv~D~~~~~a~~~A~~~giP~v~~~~~~~~~~~~~~~~~~--~~~~ 158 (365)
.++. .++....+.+.+.+++++++. +|+|||+|.+++|+..+|+++|||++.|+++++...+.+++... ..-.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~~~~~ 159 (472)
T PLN02670 81 TDVPYTKQQLLKKAFDLLEPPLTTFLETS-KPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSLMEGGD 159 (472)
T ss_pred cccchhhHHHHHHHHHHhHHHHHHHHHhC-CCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhhhhccc
Confidence 3332 344455566777888999887 89999999999999999999999999999999988888654311 1111
Q ss_pred CCCCCCcc-ccCCCCC------CCCCCCCCccCCCCCchhHHHHHHHhhhhccccchhHhHhhHhhhhhhh---------
Q 036519 159 LPLTGDQV-FLPGLPP------LDPQDTPSFINDPASYPAFFDMILTRQFSNIDKADWILCNTFYELEKEV--------- 222 (365)
Q Consensus 159 ~~~~~~~~-~~pg~p~------~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------- 222 (365)
........ .+|++++ +...++|.++............+ ........+++.+++|+|.+||..+
T Consensus 160 ~~~~~~~~~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~-~~~~~~~~~~~gvlvNTf~eLE~~~l~~l~~~~~ 238 (472)
T PLN02670 160 LRSTAEDFTVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDS-VRFGFAIGGSDVVIIRSSPEFEPEWFDLLSDLYR 238 (472)
T ss_pred CCCccccccCCCCcCCCCccccccHHHhhHHHhccCccchHHHHH-HHHHhhcccCCEEEEeCHHHHhHHHHHHHHHhhC
Confidence 11111222 2555432 33457777664211111111111 1111222233334444444333222
Q ss_pred ------------------------------------------------------------------------hCchhh--
Q 036519 223 ------------------------------------------------------------------------IKESEQ-- 228 (365)
Q Consensus 223 ------------------------------------------------------------------------~~~~~~-- 228 (365)
+|....
T Consensus 239 ~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~~FlWv~r~~~ 318 (472)
T PLN02670 239 KPIIPIGFLPPVIEDDEEDDTIDVKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEKSETPFFWVLRNEP 318 (472)
T ss_pred CCeEEEecCCccccccccccccccchhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCc
Confidence 333211
Q ss_pred -------CCCCcccccccCCCCeEE-eecchhhhhcccccccccccCChhhHHHHHHcCCCeeeccccCchhhHHHHHHh
Q 036519 229 -------SKLPENFSDETTQKGLVV-NWCPQLGVLAHEATGCFLTHCGWNSTIEALRLGVPMLAMPLWTDQSTNSKYVMD 300 (365)
Q Consensus 229 -------~~~p~~~~~~~~~~~~~~-~~~p~~~~L~~~~~~~~I~hgG~gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~ 300 (365)
..+|++|.++..++..++ +|+||.+||+|+++++||||||+||++|++++|||||++|++.||+.||+++++
T Consensus 319 ~~~~~~~~~lp~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~ 398 (472)
T PLN02670 319 GTTQNALEMLPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFPVLNEQGLNTRLLHG 398 (472)
T ss_pred ccccchhhcCChHHHHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEEeCcchhccHHHHHHHHH
Confidence 136667766666666665 899999999999999999999999999999999999999999999999999988
Q ss_pred HhcceeEecCCC-CCcccHHHHHHHHHHHhcCH---HHHHHHHHHHH---cCCCcHHHHHHHHHHHHhc
Q 036519 301 VWKMGLKVPADE-KGIVRREAIAHCIGEILEGD---KWRNFAKEAVA---KGGSSDKNIDDFVANLISS 362 (365)
Q Consensus 301 ~~G~G~~~~~~~-~~~~~~~~l~~~i~~ll~~~---~~~~~a~~~~~---~~g~s~~~~~~~~~~i~~~ 362 (365)
. |+|+.+.... ++.+++++|+++|+++|.|+ +||++|+++++ +.++..+.+++|++.+.+.
T Consensus 399 ~-g~Gv~l~~~~~~~~~~~e~i~~av~~vm~~~~g~~~r~~a~~l~~~~~~~~~~~~~~~~~~~~l~~~ 466 (472)
T PLN02670 399 K-KLGLEVPRDERDGSFTSDSVAESVRLAMVDDAGEEIRDKAKEMRNLFGDMDRNNRYVDELVHYLREN 466 (472)
T ss_pred c-CeeEEeeccccCCcCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHh
Confidence 7 9999997542 24689999999999999775 79999998754 4688999999999998864
No 16
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=2.9e-50 Score=377.47 Aligned_cols=349 Identities=27% Similarity=0.481 Sum_probs=247.3
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCccccccccCCC----CCCCCeeEEEcC-----CCCCCCCCC
Q 036519 12 SKLAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLHRDP----SSSISIPLETIS-----DGYDEGRSA 82 (365)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~~~~----~~~~gi~~~~l~-----~~~~~~~~~ 82 (365)
.++.||+++|+|++||++|++.||+.|+.+|+.|||++++.+...+.... .....+.|+.+| +++|+ +.+
T Consensus 6 ~~~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~-~~~ 84 (491)
T PLN02534 6 AKQLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGLPI-GCE 84 (491)
T ss_pred CCCCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCCCC-Ccc
Confidence 44579999999999999999999999999999999999998866554300 001248999997 57776 433
Q ss_pred CcCCHH--HHHHH---HHHHhHHHHHHHHHhcC-CCcEEEEcCCCccHHHHHHHhCCceEEEecccHHHHHHHHHhhc--
Q 036519 83 QAETDQ--AYVDR---FWQIGVQTLTELVERMN-DVDCIVYDSFLPWALDVAKKFGLTGAAFLTQSCTVASIYHYVNK-- 154 (365)
Q Consensus 83 ~~~~~~--~~~~~---~~~~~~~~l~~ll~~~~-~pD~vv~D~~~~~a~~~A~~~giP~v~~~~~~~~~~~~~~~~~~-- 154 (365)
...++. .+... ....+.+.+.+++.+.. +|+|||+|.+++|+..+|+++|||++.|++++++..+.++..+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~l~~~l~~lL~~~~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~~~~~ 164 (491)
T PLN02534 85 NLDTLPSRDLLRKFYDAVDKLQQPLERFLEQAKPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNIRLHN 164 (491)
T ss_pred ccccCCcHHHHHHHHHHHHHhHHHHHHHHHhcCCCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHHHHhc
Confidence 322211 23333 23345667888887643 78999999999999999999999999999999988776543321
Q ss_pred ccccCCCCCCccccCCCCC---CCCCCCCCccCCCCCchhHHHHHHHhhhhccccchhHhHhhHhhhhhhh---------
Q 036519 155 GLIKLPLTGDQVFLPGLPP---LDPQDTPSFINDPASYPAFFDMILTRQFSNIDKADWILCNTFYELEKEV--------- 222 (365)
Q Consensus 155 ~~~~~~~~~~~~~~pg~p~---~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------- 222 (365)
......+...++.+||+|+ +...++|.++........+...+ ......+..+++|+|.+||..+
T Consensus 165 ~~~~~~~~~~~~~iPg~p~~~~l~~~dlp~~~~~~~~~~~~~~~~----~~~~~~a~~vlvNTf~eLE~~~l~~l~~~~~ 240 (491)
T PLN02534 165 AHLSVSSDSEPFVVPGMPQSIEITRAQLPGAFVSLPDLDDVRNKM----REAESTAFGVVVNSFNELEHGCAEAYEKAIK 240 (491)
T ss_pred ccccCCCCCceeecCCCCccccccHHHCChhhcCcccHHHHHHHH----HhhcccCCEEEEecHHHhhHHHHHHHHhhcC
Confidence 1112223334567899884 67778887543211111111111 0111112233334443333211
Q ss_pred ---------------------------------------------------------------------------hCchh
Q 036519 223 ---------------------------------------------------------------------------IKESE 227 (365)
Q Consensus 223 ---------------------------------------------------------------------------~~~~~ 227 (365)
+|...
T Consensus 241 ~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~~~flW~~r 320 (491)
T PLN02534 241 KKVWCVGPVSLCNKRNLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGLEASKKPFIWVIK 320 (491)
T ss_pred CcEEEECcccccccccccccccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEe
Confidence 44433
Q ss_pred h--------C-CCCcccccccC-CCCeEEeecchhhhhcccccccccccCChhhHHHHHHcCCCeeeccccCchhhHHHH
Q 036519 228 Q--------S-KLPENFSDETT-QKGLVVNWCPQLGVLAHEATGCFLTHCGWNSTIEALRLGVPMLAMPLWTDQSTNSKY 297 (365)
Q Consensus 228 ~--------~-~~p~~~~~~~~-~~~~~~~~~p~~~~L~~~~~~~~I~hgG~gs~~eal~~GvP~v~~P~~~DQ~~nA~~ 297 (365)
. + .+|++|.++.. .++.+.+|+||..+|+|+++++||||||+||++||+++|||||++|++.||+.||++
T Consensus 321 ~~~~~~~~~~~~~p~gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~~P~~~dq~~na~~ 400 (491)
T PLN02534 321 TGEKHSELEEWLVKENFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMITWPLFAEQFLNEKL 400 (491)
T ss_pred cCccccchhhhcCchhhHHhhccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCCEEeccccccHHHHHHH
Confidence 1 1 25778876644 455566899999999999999999999999999999999999999999999999999
Q ss_pred HHhHhcceeEecCC--------CC-C-cccHHHHHHHHHHHhc---C--HHHHHHHHHH-------HHcCCCcHHHHHHH
Q 036519 298 VMDVWKMGLKVPAD--------EK-G-IVRREAIAHCIGEILE---G--DKWRNFAKEA-------VAKGGSSDKNIDDF 355 (365)
Q Consensus 298 v~~~~G~G~~~~~~--------~~-~-~~~~~~l~~~i~~ll~---~--~~~~~~a~~~-------~~~~g~s~~~~~~~ 355 (365)
+++.||+|+++... ++ + ..++++|+++|+++|. + +++|+||+++ .++||||++++++|
T Consensus 401 ~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~~a~~Av~~GGSS~~nl~~f 480 (491)
T PLN02534 401 IVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQELGVMARKAMELGGSSHINLSIL 480 (491)
T ss_pred HHHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 99999999988521 01 2 4899999999999995 2 3677666554 55689999999999
Q ss_pred HHHHHhccCC
Q 036519 356 VANLISSKSL 365 (365)
Q Consensus 356 ~~~i~~~~~~ 365 (365)
|+.|.+..+|
T Consensus 481 v~~i~~~~~~ 490 (491)
T PLN02534 481 IQDVLKQQSL 490 (491)
T ss_pred HHHHHHHhcc
Confidence 9999876543
No 17
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=1.4e-49 Score=376.57 Aligned_cols=343 Identities=26% Similarity=0.427 Sum_probs=230.5
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCccccccccCCCC----CCC----CeeEEEcC---CCCCCCCC
Q 036519 13 KLAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLHRDPS----SSI----SIPLETIS---DGYDEGRS 81 (365)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~~~~~----~~~----gi~~~~l~---~~~~~~~~ 81 (365)
+++||+++|+|++||++|++.||++|++||++|||++++.+.+.+++... ..+ .+.+..+| +++|+ +.
T Consensus 4 ~~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~-g~ 82 (482)
T PLN03007 4 EKLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPE-GC 82 (482)
T ss_pred CCcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCC-Cc
Confidence 46799999999999999999999999999999999999988766653000 011 34445555 45665 33
Q ss_pred CCcC--------CHHHHHHHHH---HHhHHHHHHHHHhcCCCcEEEEcCCCccHHHHHHHhCCceEEEecccHHHHHHHH
Q 036519 82 AQAE--------TDQAYVDRFW---QIGVQTLTELVERMNDVDCIVYDSFLPWALDVAKKFGLTGAAFLTQSCTVASIYH 150 (365)
Q Consensus 82 ~~~~--------~~~~~~~~~~---~~~~~~l~~ll~~~~~pD~vv~D~~~~~a~~~A~~~giP~v~~~~~~~~~~~~~~ 150 (365)
+... ....+...+. ..+.+.+.++++.. +|||||+|.+++|+..+|+++|||++.|++++++..+.++
T Consensus 83 e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~~~~~ 161 (482)
T PLN03007 83 ENVDFITSNNNDDSGDLFLKFLFSTKYFKDQLEKLLETT-RPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSLCASY 161 (482)
T ss_pred ccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhcC-CCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHHHHHH
Confidence 2221 1223333333 34455566666665 8999999999999999999999999999999988777655
Q ss_pred Hhhccc-c-cCCCCCCccccCCCCC---CCCCCCCCccCCCCCchhHHHHHHHhhhhccccchhH---------------
Q 036519 151 YVNKGL-I-KLPLTGDQVFLPGLPP---LDPQDTPSFINDPASYPAFFDMILTRQFSNIDKADWI--------------- 210 (365)
Q Consensus 151 ~~~~~~-~-~~~~~~~~~~~pg~p~---~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 210 (365)
..+... . ...+....+.+||+|. +...+++..- ....+..++ ........+.+.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~pg~p~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~vl~Nt~~~le~~~~~~ 236 (482)
T PLN03007 162 CIRVHKPQKKVASSSEPFVIPDLPGDIVITEEQINDAD----EESPMGKFM-KEVRESEVKSFGVLVNSFYELESAYADF 236 (482)
T ss_pred HHHhcccccccCCCCceeeCCCCCCccccCHHhcCCCC----CchhHHHHH-HHHHhhcccCCEEEEECHHHHHHHHHHH
Confidence 432111 1 1111122345778762 2222333110 000000011 0000001111111
Q ss_pred ---------------------------------------------------------------------hHhhHhhhhhh
Q 036519 211 ---------------------------------------------------------------------LCNTFYELEKE 221 (365)
Q Consensus 211 ---------------------------------------------------------------------~~~~~~~l~~~ 221 (365)
+...+...+.+
T Consensus 237 ~~~~~~~~~~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~~~~l~~~~~~ 316 (482)
T PLN03007 237 YKSFVAKRAWHIGPLSLYNRGFEEKAERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFEIAAGLEGSGQN 316 (482)
T ss_pred HHhccCCCEEEEccccccccccccccccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHHHHHHHHHCCCC
Confidence 11222222233
Q ss_pred hhCchhh--------CCCCccccccc-CCCCeEEeecchhhhhcccccccccccCChhhHHHHHHcCCCeeeccccCchh
Q 036519 222 VIKESEQ--------SKLPENFSDET-TQKGLVVNWCPQLGVLAHEATGCFLTHCGWNSTIEALRLGVPMLAMPLWTDQS 292 (365)
Q Consensus 222 ~~~~~~~--------~~~p~~~~~~~-~~~~~~~~~~p~~~~L~~~~~~~~I~hgG~gs~~eal~~GvP~v~~P~~~DQ~ 292 (365)
++|.... +.+|++|.++. +.++.+.+|+||.+||+|+++++||||||+||++||+++|||||++|+++||+
T Consensus 317 flw~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GVP~v~~P~~~DQ~ 396 (482)
T PLN03007 317 FIWVVRKNENQGEKEEWLPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAAGLPMVTWPVGAEQF 396 (482)
T ss_pred EEEEEecCCcccchhhcCCHHHHHHhccCCEEEecCCCHHHHhccCccceeeecCcchHHHHHHHcCCCeeeccchhhhh
Confidence 3554321 24677776554 45666779999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhHhcceeEecCC-----CCCcccHHHHHHHHHHHhcCH---HHHHHHHHH-------HHcCCCcHHHHHHHHH
Q 036519 293 TNSKYVMDVWKMGLKVPAD-----EKGIVRREAIAHCIGEILEGD---KWRNFAKEA-------VAKGGSSDKNIDDFVA 357 (365)
Q Consensus 293 ~nA~~v~~~~G~G~~~~~~-----~~~~~~~~~l~~~i~~ll~~~---~~~~~a~~~-------~~~~g~s~~~~~~~~~ 357 (365)
.||+++++.|++|+.+... ..+.+++++|+++|+++|.|+ +||++|+++ .++||||++++++|++
T Consensus 397 ~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~~~r~~a~~~~~~a~~a~~~gGsS~~~l~~~v~ 476 (482)
T PLN03007 397 YNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIVGEEAEERRLRAKKLAEMAKAAVEEGGSSFNDLNKFME 476 (482)
T ss_pred hhHHHHHHhhcceeEeccccccccccCcccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 9999998766788776421 123689999999999999876 787777654 4468999999999999
Q ss_pred HHHhc
Q 036519 358 NLISS 362 (365)
Q Consensus 358 ~i~~~ 362 (365)
.|.+.
T Consensus 477 ~~~~~ 481 (482)
T PLN03007 477 ELNSR 481 (482)
T ss_pred HHHhc
Confidence 98763
No 18
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=1.1e-49 Score=370.32 Aligned_cols=335 Identities=24% Similarity=0.385 Sum_probs=244.0
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhCC--CeEEE--EeCccccccc----cCCCCCCCCeeEEEcCCCCCC-CCCCC
Q 036519 13 KLAHCLVLSYPAQGHMNPLLQFSKRLEHNG--IKVTL--VTTYFISKSL----HRDPSSSISIPLETISDGYDE-GRSAQ 83 (365)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~la~~L~~~G--h~Vt~--~~~~~~~~~v----~~~~~~~~gi~~~~l~~~~~~-~~~~~ 83 (365)
++.||+++|+|++||++|++.||+.|+.+| +.||+ ++++.+...+ +......+++.|+.+|++.+. .....
T Consensus 2 ~~~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~ 81 (451)
T PLN03004 2 GEEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYISSVSSSFPSITFHHLPAVTPYSSSSTS 81 (451)
T ss_pred CCcEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhccccCCCCCeEEEEcCCCCCCCCcccc
Confidence 457999999999999999999999999998 55655 5554432221 110011246999999976642 12122
Q ss_pred cCCHHHHHHHHHHHhHHHHHHHHHhcC---CCcEEEEcCCCccHHHHHHHhCCceEEEecccHHHHHHHHHhhcc--ccc
Q 036519 84 AETDQAYVDRFWQIGVQTLTELVERMN---DVDCIVYDSFLPWALDVAKKFGLTGAAFLTQSCTVASIYHYVNKG--LIK 158 (365)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~l~~ll~~~~---~pD~vv~D~~~~~a~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~--~~~ 158 (365)
..+....+..+.......+.+++.++. +++|||+|.+++|+..+|+++|||++.|++++++.++++++.... ..+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~~~~~~~~ 161 (451)
T PLN03004 82 RHHHESLLLEILCFSNPSVHRTLFSLSRNFNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLPTIDETTP 161 (451)
T ss_pred ccCHHHHHHHHHHhhhHHHHHHHHhcCCCCCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHHhcccccc
Confidence 223334444455566667788887652 459999999999999999999999999999999999988775422 111
Q ss_pred CC--CCCCccccCCCCCCCCCCCCCccCCCCCchhHHHHHHHhhhhccccchhHhHhhHhhhhhhh--------------
Q 036519 159 LP--LTGDQVFLPGLPPLDPQDTPSFINDPASYPAFFDMILTRQFSNIDKADWILCNTFYELEKEV-------------- 222 (365)
Q Consensus 159 ~~--~~~~~~~~pg~p~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------------- 222 (365)
.. ....++.+||+|.++..++|.++.... ...+..+ ........+++.+++|+|.++|.++
T Consensus 162 ~~~~~~~~~v~iPg~p~l~~~dlp~~~~~~~--~~~~~~~-~~~~~~~~~~~~vl~NTf~eLE~~~l~~l~~~~~~~~v~ 238 (451)
T PLN03004 162 GKNLKDIPTVHIPGVPPMKGSDMPKAVLERD--DEVYDVF-IMFGKQLSKSSGIIINTFDALENRAIKAITEELCFRNIY 238 (451)
T ss_pred ccccccCCeecCCCCCCCChHHCchhhcCCc--hHHHHHH-HHHHHhhcccCeeeeeeHHHhHHHHHHHHHhcCCCCCEE
Confidence 11 111235789999999999998775422 1222333 3333444556677777777776632
Q ss_pred ----------------------------------------------------------------hCchhh----------
Q 036519 223 ----------------------------------------------------------------IKESEQ---------- 228 (365)
Q Consensus 223 ----------------------------------------------------------------~~~~~~---------- 228 (365)
+|....
T Consensus 239 ~vGPl~~~~~~~~~~~~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~~r~~~~~~~~~~~ 318 (451)
T PLN03004 239 PIGPLIVNGRIEDRNDNKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWVVRNPPELEKTELD 318 (451)
T ss_pred EEeeeccCccccccccchhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCccccccccc
Confidence 343321
Q ss_pred -C-CCCcccccccCCC-CeEEeecchhhhhcccccccccccCChhhHHHHHHcCCCeeeccccCchhhHHHHHHhHhcce
Q 036519 229 -S-KLPENFSDETTQK-GLVVNWCPQLGVLAHEATGCFLTHCGWNSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVWKMG 305 (365)
Q Consensus 229 -~-~~p~~~~~~~~~~-~~~~~~~p~~~~L~~~~~~~~I~hgG~gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~~G~G 305 (365)
. .+|++|.++..++ +.+.+|+||.+||+|+++++||||||+||++|++++|||||++|++.||+.||+++++.||+|
T Consensus 319 ~~~~lp~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~~DQ~~na~~~~~~~g~g 398 (451)
T PLN03004 319 LKSLLPEGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAEQRFNRVMIVDEIKIA 398 (451)
T ss_pred hhhhCChHHHHhccCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEeccccccchhhHHHHHHHhCce
Confidence 1 2677787776654 456689999999999999999999999999999999999999999999999999998766999
Q ss_pred eEecCCCCCcccHHHHHHHHHHHhcCHHHHHHHHHH-------HHcCCCcHH
Q 036519 306 LKVPADEKGIVRREAIAHCIGEILEGDKWRNFAKEA-------VAKGGSSDK 350 (365)
Q Consensus 306 ~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~~-------~~~~g~s~~ 350 (365)
+.++...++.+++++|+++|+++|+|++||++++++ .++||||++
T Consensus 399 ~~l~~~~~~~~~~e~l~~av~~vm~~~~~r~~a~~~~~~a~~Av~~GGSS~~ 450 (451)
T PLN03004 399 ISMNESETGFVSSTEVEKRVQEIIGECPVRERTMAMKNAAELALTETGSSHT 450 (451)
T ss_pred EEecCCcCCccCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 999854223679999999999999998887777654 456788864
No 19
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=3.3e-49 Score=368.00 Aligned_cols=333 Identities=22% Similarity=0.356 Sum_probs=239.9
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCccccccccCCCCCCCCeeEEEcC----CCCCCCCCCCcCCH
Q 036519 12 SKLAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLHRDPSSSISIPLETIS----DGYDEGRSAQAETD 87 (365)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~~~~~~~~gi~~~~l~----~~~~~~~~~~~~~~ 87 (365)
..+.||+++|+|++||++|++.||+.|+++|++|||++++.+...++.......++.|..++ +++|+ +.+...++
T Consensus 2 ~~~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~~~~~~i~~~~i~lP~~dGLP~-g~e~~~~l 80 (446)
T PLN00414 2 GSKFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLNLFPDSIVFEPLTLPPVDGLPF-GAETASDL 80 (446)
T ss_pred CCCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhcccccCCCceEEEEecCCCcCCCCC-cccccccc
Confidence 34679999999999999999999999999999999999998877665311112357885553 56776 33332222
Q ss_pred H----HHHHHHHHHhHHHHHHHHHhcCCCcEEEEcCCCccHHHHHHHhCCceEEEecccHHHHHHHHHhhcccccCCCCC
Q 036519 88 Q----AYVDRFWQIGVQTLTELVERMNDVDCIVYDSFLPWALDVAKKFGLTGAAFLTQSCTVASIYHYVNKGLIKLPLTG 163 (365)
Q Consensus 88 ~----~~~~~~~~~~~~~l~~ll~~~~~pD~vv~D~~~~~a~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (365)
. ..+..........+.+++... +|||||+|. ++|+..+|+++|||++.|+++++...+.+++.... .
T Consensus 81 ~~~~~~~~~~a~~~l~~~l~~~L~~~-~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~~~~~-~------ 151 (446)
T PLN00414 81 PNSTKKPIFDAMDLLRDQIEAKVRAL-KPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLAPRAE-L------ 151 (446)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcC-CCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhCcHhh-c------
Confidence 2 222333334556677777766 899999995 89999999999999999999999888877652211 0
Q ss_pred CccccCCCCC----CCCCC--CCCccCCCCCchhHHHHHHHhhhhccccchhHhHhhHhhhhhhh---------------
Q 036519 164 DQVFLPGLPP----LDPQD--TPSFINDPASYPAFFDMILTRQFSNIDKADWILCNTFYELEKEV--------------- 222 (365)
Q Consensus 164 ~~~~~pg~p~----~~~~~--lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------------- 222 (365)
...+||+|. ++..+ +|.++.. .. ..+ ........+++.+++|+|.++|..+
T Consensus 152 -~~~~pg~p~~~~~~~~~~~~~~~~~~~--~~----~~~-~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~v~~V 223 (446)
T PLN00414 152 -GFPPPDYPLSKVALRGHDANVCSLFAN--SH----ELF-GLITKGLKNCDVVSIRTCVELEGNLCDFIERQCQRKVLLT 223 (446)
T ss_pred -CCCCCCCCCCcCcCchhhcccchhhcc--cH----HHH-HHHHHhhccCCEEEEechHHHHHHHHHHHHHhcCCCeEEE
Confidence 012456653 22222 2333321 01 112 2222333445566666666665543
Q ss_pred -------------------------------------------------------------hCch----h----hCCCCc
Q 036519 223 -------------------------------------------------------------IKES----E----QSKLPE 233 (365)
Q Consensus 223 -------------------------------------------------------------~~~~----~----~~~~p~ 233 (365)
+|.. + .+.+|+
T Consensus 224 GPl~~~~~~~~~~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~Flwvvr~~~~~~~~~~~lp~ 303 (446)
T PLN00414 224 GPMLPEPQNKSGKPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPFLIAVMPPKGSSTVQEALPE 303 (446)
T ss_pred cccCCCcccccCcccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCeEEEEecCCCcccchhhCCh
Confidence 2221 1 135899
Q ss_pred ccccccCCCCeEE-eecchhhhhcccccccccccCChhhHHHHHHcCCCeeeccccCchhhHHHHHHhHhcceeEecCCC
Q 036519 234 NFSDETTQKGLVV-NWCPQLGVLAHEATGCFLTHCGWNSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVWKMGLKVPADE 312 (365)
Q Consensus 234 ~~~~~~~~~~~~~-~~~p~~~~L~~~~~~~~I~hgG~gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~ 312 (365)
+|.++..++..++ +|+||..||+|+++++||||||+||++|++++|||||++|++.||+.||+++++.||+|+.+....
T Consensus 304 ~f~~r~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~~~g~g~~~~~~~ 383 (446)
T PLN00414 304 GFEERVKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQVLITRLLTEELEVSVKVQRED 383 (446)
T ss_pred hHHHHhcCCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcccchHHHHHHHHHHhCeEEEecccc
Confidence 9998888888887 799999999999999999999999999999999999999999999999999976559999997542
Q ss_pred CCcccHHHHHHHHHHHhcCH-----HHHHHHHHHHH---cCCCcHHHHHHHHHHHHhc
Q 036519 313 KGIVRREAIAHCIGEILEGD-----KWRNFAKEAVA---KGGSSDKNIDDFVANLISS 362 (365)
Q Consensus 313 ~~~~~~~~l~~~i~~ll~~~-----~~~~~a~~~~~---~~g~s~~~~~~~~~~i~~~ 362 (365)
++.+++++|+++++++|.|+ ++|++++++++ +.|++...+++||+.+++.
T Consensus 384 ~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~~~~gg~ss~l~~~v~~~~~~ 441 (446)
T PLN00414 384 SGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETLVSPGLLSGYADKFVEALENE 441 (446)
T ss_pred CCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh
Confidence 23589999999999999753 48888887633 3444345599999998753
No 20
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=3.4e-49 Score=372.90 Aligned_cols=346 Identities=26% Similarity=0.430 Sum_probs=238.8
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhCCC---eEEEEeCccccc-----cccCCCCCCCCeeEEEcCCCCCCCCCCC-
Q 036519 13 KLAHCLVLSYPAQGHMNPLLQFSKRLEHNGI---KVTLVTTYFISK-----SLHRDPSSSISIPLETISDGYDEGRSAQ- 83 (365)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~la~~L~~~Gh---~Vt~~~~~~~~~-----~v~~~~~~~~gi~~~~l~~~~~~~~~~~- 83 (365)
++.||+|+|+|++||++|++.||+.|+.+|. .||+..++.... .+.......+++.|+.+|++..+...+.
T Consensus 2 ~~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~~~~~~ 81 (475)
T PLN02167 2 KEAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSLIASEPRIRLVTLPEVQDPPPMELF 81 (475)
T ss_pred CccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhcccCCCCeEEEECCCCCCCcccccc
Confidence 4569999999999999999999999999984 466666543221 1211001124699999986542101110
Q ss_pred cCCHHHHHHHHHHHhHHHHHHHHHhcC---------CCcEEEEcCCCccHHHHHHHhCCceEEEecccHHHHHHHHHhhc
Q 036519 84 AETDQAYVDRFWQIGVQTLTELVERMN---------DVDCIVYDSFLPWALDVAKKFGLTGAAFLTQSCTVASIYHYVNK 154 (365)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~l~~ll~~~~---------~pD~vv~D~~~~~a~~~A~~~giP~v~~~~~~~~~~~~~~~~~~ 154 (365)
.......+..+...+...+.+.++++. +++|||+|.+++|+..+|+++|||++.|++++++.++.+++...
T Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~~~~~~ 161 (475)
T PLN02167 82 VKASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGMMKYLPE 161 (475)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHHHHHHHH
Confidence 111212223333344444455444331 34999999999999999999999999999999988888775432
Q ss_pred --cccc--CC--CCCCccccCCCC-CCCCCCCCCccCCCCCchhHHHHHHHhhhhccccchhHhHhhHhhhhhhh-----
Q 036519 155 --GLIK--LP--LTGDQVFLPGLP-PLDPQDTPSFINDPASYPAFFDMILTRQFSNIDKADWILCNTFYELEKEV----- 222 (365)
Q Consensus 155 --~~~~--~~--~~~~~~~~pg~p-~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----- 222 (365)
+... ++ ....++.+||+| +++..++|.++..... ...+ ........+++.+++|+|.++|..+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~iPgl~~~l~~~dlp~~~~~~~~----~~~~-~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~ 236 (475)
T PLN02167 162 RHRKTASEFDLSSGEEELPIPGFVNSVPTKVLPPGLFMKES----YEAW-VEIAERFPEAKGILVNSFTELEPNAFDYFS 236 (475)
T ss_pred hccccccccccCCCCCeeECCCCCCCCChhhCchhhhCcch----HHHH-HHHHHhhcccCEeeeccHHHHHHHHHHHHH
Confidence 1111 11 112346789994 6888888865532111 1111 1222233334455555555554422
Q ss_pred ----------------------------------------------------------------------------hCch
Q 036519 223 ----------------------------------------------------------------------------IKES 226 (365)
Q Consensus 223 ----------------------------------------------------------------------------~~~~ 226 (365)
+|..
T Consensus 237 ~~~~~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela~~l~~~~~~flw~~ 316 (475)
T PLN02167 237 RLPENYPPVYPVGPILSLKDRTSPNLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIAQALELVGCRFLWSI 316 (475)
T ss_pred hhcccCCeeEEeccccccccccCCCCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCcEEEEE
Confidence 4432
Q ss_pred h---------hCCCCcccccccCCCCeEEeecchhhhhcccccccccccCChhhHHHHHHcCCCeeeccccCchhhHHHH
Q 036519 227 E---------QSKLPENFSDETTQKGLVVNWCPQLGVLAHEATGCFLTHCGWNSTIEALRLGVPMLAMPLWTDQSTNSKY 297 (365)
Q Consensus 227 ~---------~~~~p~~~~~~~~~~~~~~~~~p~~~~L~~~~~~~~I~hgG~gs~~eal~~GvP~v~~P~~~DQ~~nA~~ 297 (365)
. ...+|++|.++..+++++++|+||.+||+|+++++||||||+||++||+++|||||++|+++||+.||++
T Consensus 317 ~~~~~~~~~~~~~lp~~~~er~~~rg~v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~ 396 (475)
T PLN02167 317 RTNPAEYASPYEPLPEGFMDRVMGRGLVCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVPIATWPMYAEQQLNAFT 396 (475)
T ss_pred ecCcccccchhhhCChHHHHHhccCeeeeccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCCCEEeccccccchhhHHH
Confidence 2 1136778877777888899999999999999999999999999999999999999999999999999987
Q ss_pred HHhHhcceeEecCC---C-CCcccHHHHHHHHHHHhcCH-HHHHHHHHH-------HHcCCCcHHHHHHHHHHHHhcc
Q 036519 298 VMDVWKMGLKVPAD---E-KGIVRREAIAHCIGEILEGD-KWRNFAKEA-------VAKGGSSDKNIDDFVANLISSK 363 (365)
Q Consensus 298 v~~~~G~G~~~~~~---~-~~~~~~~~l~~~i~~ll~~~-~~~~~a~~~-------~~~~g~s~~~~~~~~~~i~~~~ 363 (365)
+.+.||+|+.+... . ++.+++++|+++|+++|.++ +||++|+++ .++||||++++++||+.|.+.+
T Consensus 397 ~~~~~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~r~~a~~~~~~~~~av~~gGsS~~~l~~~v~~i~~~~ 474 (475)
T PLN02167 397 MVKELGLAVELRLDYVSAYGEIVKADEIAGAVRSLMDGEDVPRKKVKEIAEAARKAVMDGGSSFVAVKRFIDDLLGDH 474 (475)
T ss_pred HHHHhCeeEEeecccccccCCcccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcC
Confidence 54444999998642 0 13579999999999999754 677777654 5678999999999999998765
No 21
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=1.6e-48 Score=362.19 Aligned_cols=342 Identities=24% Similarity=0.403 Sum_probs=250.0
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhC-CCeEEEEeCcccccccc-C--C-CC-CCCCeeEEEcCCCCCCCCC-CCcCC
Q 036519 14 LAHCLVLSYPAQGHMNPLLQFSKRLEHN-GIKVTLVTTYFISKSLH-R--D-PS-SSISIPLETISDGYDEGRS-AQAET 86 (365)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~la~~L~~~-Gh~Vt~~~~~~~~~~v~-~--~-~~-~~~gi~~~~l~~~~~~~~~-~~~~~ 86 (365)
..||+++|+|++||++|++.||+.|+.+ |..|||++++.+...+. + . .. ...++.|+.+|++..+ +. ....+
T Consensus 3 ~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~-~l~~~~~~ 81 (470)
T PLN03015 3 QPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAAARTTCQITEIPSVDVD-NLVEPDAT 81 (470)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhccccccccccCCCceEEEECCCCccc-cCCCCCcc
Confidence 3599999999999999999999999987 99999998876543321 0 0 01 1125999999853322 22 11113
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhcC-CCcEEEEcCCCccHHHHHHHhCCc-eEEEecccHHHHHHHHHhh--cccccC--C
Q 036519 87 DQAYVDRFWQIGVQTLTELVERMN-DVDCIVYDSFLPWALDVAKKFGLT-GAAFLTQSCTVASIYHYVN--KGLIKL--P 160 (365)
Q Consensus 87 ~~~~~~~~~~~~~~~l~~ll~~~~-~pD~vv~D~~~~~a~~~A~~~giP-~v~~~~~~~~~~~~~~~~~--~~~~~~--~ 160 (365)
....+......+.+.++++++++. +|+|||+|.+++|+..+|+++||| .+.|++++++..+.+++.. .+...- .
T Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~~~~~~~~~~~ 161 (470)
T PLN03015 82 IFTKMVVKMRAMKPAVRDAVKSMKRKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPVLDTVVEGEYV 161 (470)
T ss_pred HHHHHHHHHHhchHHHHHHHHhcCCCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhhhhcccccccC
Confidence 333344444566778899988764 789999999999999999999999 5888888887776665532 221111 1
Q ss_pred CCCCccccCCCCCCCCCCCCCccCCCCCchhHHHHHHHhhhhccccchhHhHhhHhhhhhhh------------------
Q 036519 161 LTGDQVFLPGLPPLDPQDTPSFINDPASYPAFFDMILTRQFSNIDKADWILCNTFYELEKEV------------------ 222 (365)
Q Consensus 161 ~~~~~~~~pg~p~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------------------ 222 (365)
+...++.+||+|+++..++|.++.... ...+ ..+ ........+++.+++|+|.+||..+
T Consensus 162 ~~~~~~~vPg~p~l~~~dlp~~~~~~~-~~~~-~~~-~~~~~~~~~a~gvlvNTf~eLE~~~~~~l~~~~~~~~~~~~~v 238 (470)
T PLN03015 162 DIKEPLKIPGCKPVGPKELMETMLDRS-DQQY-KEC-VRSGLEVPMSDGVLVNTWEELQGNTLAALREDMELNRVMKVPV 238 (470)
T ss_pred CCCCeeeCCCCCCCChHHCCHhhcCCC-cHHH-HHH-HHHHHhcccCCEEEEechHHHhHHHHHHHHhhcccccccCCce
Confidence 112456799999999999997664322 2222 223 2222345566777777777776421
Q ss_pred -------------------------------------------------------------hCchh--------------
Q 036519 223 -------------------------------------------------------------IKESE-------------- 227 (365)
Q Consensus 223 -------------------------------------------------------------~~~~~-------------- 227 (365)
+|...
T Consensus 239 ~~VGPl~~~~~~~~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~FlWv~r~~~~~~~~~~~~~~ 318 (470)
T PLN03015 239 YPIGPIVRTNVHVEKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELSGQRFVWVLRRPASYLGASSSDDD 318 (470)
T ss_pred EEecCCCCCcccccchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhCCCcEEEEEecCcccccccccccc
Confidence 34321
Q ss_pred --hCCCCcccccccCCCCeEE-eecchhhhhcccccccccccCChhhHHHHHHcCCCeeeccccCchhhHHHHHHhHhcc
Q 036519 228 --QSKLPENFSDETTQKGLVV-NWCPQLGVLAHEATGCFLTHCGWNSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVWKM 304 (365)
Q Consensus 228 --~~~~p~~~~~~~~~~~~~~-~~~p~~~~L~~~~~~~~I~hgG~gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~~G~ 304 (365)
.+.+|++|.++..++..++ +|+||..||+|+++++||||||+||++|++++|||||++|++.||+.||+++++.||+
T Consensus 319 ~~~~~lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~v~~P~~~DQ~~na~~~~~~~gv 398 (470)
T PLN03015 319 QVSASLPEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPIVAWPLYAEQWMNATLLTEEIGV 398 (470)
T ss_pred chhhcCChHHHHhhccCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCCCEEecccccchHHHHHHHHHHhCe
Confidence 1147778877777777655 8999999999999999999999999999999999999999999999999999777799
Q ss_pred eeEecC-CCCCcccHHHHHHHHHHHhc-----CHHHHHHHHH-------HHHcCCCcHHHHHHHHHHH
Q 036519 305 GLKVPA-DEKGIVRREAIAHCIGEILE-----GDKWRNFAKE-------AVAKGGSSDKNIDDFVANL 359 (365)
Q Consensus 305 G~~~~~-~~~~~~~~~~l~~~i~~ll~-----~~~~~~~a~~-------~~~~~g~s~~~~~~~~~~i 359 (365)
|+++.. ..++.+++++|+++|+++|. ++++|+||++ +.++||||++++++|++.+
T Consensus 399 g~~~~~~~~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a~~Av~eGGSS~~nl~~~~~~~ 466 (470)
T PLN03015 399 AVRTSELPSEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSSERAWSHGGSSYNSLFEWAKRC 466 (470)
T ss_pred eEEecccccCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHhc
Confidence 999962 11236899999999999994 1355655554 4567999999999999876
No 22
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=6.2e-41 Score=314.40 Aligned_cols=309 Identities=18% Similarity=0.210 Sum_probs=208.9
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCccccccccCCCCCCCCeeEEEcCCCCCCC--CCC--------Cc
Q 036519 15 AHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLHRDPSSSISIPLETISDGYDEG--RSA--------QA 84 (365)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~~~~~~~~gi~~~~l~~~~~~~--~~~--------~~ 84 (365)
|||+|++.|++||++|+++||++|++|||+|+|++++.+.+.+++ .|++|+++++..... ... ..
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~~-----~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEA-----AGLEFVPVGGDPDELLASPERNAGLLLLGP 75 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHHH-----cCCceeeCCCCHHHHHhhhhhcccccccch
Confidence 799999999999999999999999999999999999999999987 899999997543320 000 01
Q ss_pred CCHHHHHHHHHHHhHHHHHHHHHhcC--CCcEEEEcCCCccHHHHHHHhCCceEEEecccHHHHHH--------------
Q 036519 85 ETDQAYVDRFWQIGVQTLTELVERMN--DVDCIVYDSFLPWALDVAKKFGLTGAAFLTQSCTVASI-------------- 148 (365)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~~ll~~~~--~pD~vv~D~~~~~a~~~A~~~giP~v~~~~~~~~~~~~-------------- 148 (365)
.........+.......++++++... +||+||+|.+++++..+|+++|||++.+++.+......
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (401)
T cd03784 76 GLLLGALRLLRREAEAMLDDLVAAARDWGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTSAFPPPLGRANLRLYA 155 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCccccCCCccchHHHHHHH
Confidence 11222333344444445555555432 99999999988889999999999999988766432110
Q ss_pred ------HHH-h------hcccccCCCC------CCc--c-ccCCCCCC--CCCC---------------------CCCcc
Q 036519 149 ------YHY-V------NKGLIKLPLT------GDQ--V-FLPGLPPL--DPQD---------------------TPSFI 183 (365)
Q Consensus 149 ------~~~-~------~~~~~~~~~~------~~~--~-~~pg~p~~--~~~~---------------------lp~~~ 183 (365)
... . ....+.++.. ... . ..+.+.+. ++.. +..++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 235 (401)
T cd03784 156 LLEAELWQDLLGAWLRARRRRLGLPPLSLLDGSDVPELYGFSPAVLPPPPDWPRFDLVTGYGFRDVPYNGPPPPELWLFL 235 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCcEEEecCcccCCCCCCccccCcEeCCCCCCCCCCCCCCHHHHHHH
Confidence 000 0 0000111110 000 0 01111000 0000 00111
Q ss_pred CCCCCchhHHHHHHHhhhhccc-cchhHhHhhHhhhhhhhhCchhhCCCCcccccccCCCCeEEeecchhhhhccccccc
Q 036519 184 NDPASYPAFFDMILTRQFSNID-KADWILCNTFYELEKEVIKESEQSKLPENFSDETTQKGLVVNWCPQLGVLAHEATGC 262 (365)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~p~~~~L~~~~~~~ 262 (365)
. ...+.++..+ |+...... .....+++++..++.++++..+...... ...++|+++.+|+||.++|++|++
T Consensus 236 ~--~~~~~v~v~~-Gs~~~~~~~~~~~~~~~a~~~~~~~~i~~~g~~~~~~---~~~~~~v~~~~~~p~~~ll~~~d~-- 307 (401)
T cd03784 236 A--AGRPPVYVGF-GSMVVRDPEALARLDVEAVATLGQRAILSLGWGGLGA---EDLPDNVRVVDFVPHDWLLPRCAA-- 307 (401)
T ss_pred h--CCCCcEEEeC-CCCcccCHHHHHHHHHHHHHHcCCeEEEEccCccccc---cCCCCceEEeCCCCHHHHhhhhhe--
Confidence 1 1123333344 44332222 2335566777776666666554433222 245789999999999999999999
Q ss_pred ccccCChhhHHHHHHcCCCeeeccccCchhhHHHHHHhHhcceeEecCCCCCcccHHHHHHHHHHHhcCHHHHHHHHHH
Q 036519 263 FLTHCGWNSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVWKMGLKVPADEKGIVRREAIAHCIGEILEGDKWRNFAKEA 341 (365)
Q Consensus 263 ~I~hgG~gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~~ 341 (365)
||||||+||++|++++|||+|++|+..||+.||+++++. |+|+.+... .+++++|.++|+++++++.+ +++++.
T Consensus 308 ~I~hgG~~t~~eal~~GvP~v~~P~~~dQ~~~a~~~~~~-G~g~~l~~~---~~~~~~l~~al~~~l~~~~~-~~~~~~ 381 (401)
T cd03784 308 VVHHGGAGTTAAALRAGVPQLVVPFFGDQPFWAARVAEL-GAGPALDPR---ELTAERLAAALRRLLDPPSR-RRAAAL 381 (401)
T ss_pred eeecCCchhHHHHHHcCCCEEeeCCCCCcHHHHHHHHHC-CCCCCCCcc---cCCHHHHHHHHHHHhCHHHH-HHHHHH
Confidence 999999999999999999999999999999999999999 999999877 78999999999999986544 444443
No 23
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=2.5e-39 Score=302.32 Aligned_cols=327 Identities=21% Similarity=0.286 Sum_probs=219.6
Q ss_pred EcCCCCCChHHHHHHHHHHHhCCCeEEEEeCccccccccCCCCCCCCeeEEEcCCCCCCCCCCCc---CCHHHHHHHHHH
Q 036519 20 LSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLHRDPSSSISIPLETISDGYDEGRSAQA---ETDQAYVDRFWQ 96 (365)
Q Consensus 20 ~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~~~~~~~~gi~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~ 96 (365)
+.+|++||++|+++||++|+++||+|+|++++.+.+.+++ .|+.|+.++..+........ .++......+..
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~-----~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEA-----AGAEFVLYGSALPPPDNPPENTEEEPIDIIEKLLD 75 (392)
T ss_pred CCCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHH-----cCCEEEecCCcCccccccccccCcchHHHHHHHHH
Confidence 3579999999999999999999999999999999999997 89999999865432101000 233334444444
Q ss_pred HhHHHHHHHHHhcC--CCcEEEEcCCCccHHHHHHHhCCceEEEecccHHHH-------------H-H----------HH
Q 036519 97 IGVQTLTELVERMN--DVDCIVYDSFLPWALDVAKKFGLTGAAFLTQSCTVA-------------S-I----------YH 150 (365)
Q Consensus 97 ~~~~~l~~ll~~~~--~pD~vv~D~~~~~a~~~A~~~giP~v~~~~~~~~~~-------------~-~----------~~ 150 (365)
.....++.+.+.+. +||+||+|.+++++..+|+++|||+|.+.+.+.... + . ..
T Consensus 76 ~~~~~~~~l~~~~~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (392)
T TIGR01426 76 EAEDVLPQLEEAYKGDRPDLIVYDIASWTGRLLARKWDVPVISSFPTFAANEEFEEMVSPAGEGSAEEGAIAERGLAEYV 155 (392)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEECCccHHHHHHHHHhCCCEEEEehhhcccccccccccccchhhhhhhccccchhHHHH
Confidence 43334444443332 899999999888999999999999998865431110 0 0 00
Q ss_pred Hh---hcccccCC--CC------CC--cc-cc-CCC-------C---------CCCCCCCCCccCCCCCchhHHHHHHHh
Q 036519 151 YV---NKGLIKLP--LT------GD--QV-FL-PGL-------P---------PLDPQDTPSFINDPASYPAFFDMILTR 199 (365)
Q Consensus 151 ~~---~~~~~~~~--~~------~~--~~-~~-pg~-------p---------~~~~~~lp~~~~~~~~~~~~~~~~~~~ 199 (365)
.. +...+-++ .. .. .+ .. +.+ | .....+.+.+.......+.++..+ |+
T Consensus 156 ~~~~~~r~~~gl~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~Gp~~~~~~~~~~~~~~~~~~~~v~vs~-Gs 234 (392)
T TIGR01426 156 ARLSALLEEHGITTPPVEFLAAPRRDLNLVYTPKAFQPAGETFDDSFTFVGPCIGDRKEDGSWERPGDGRPVVLISL-GT 234 (392)
T ss_pred HHHHHHHHHhCCCCCCHHHHhcCCcCcEEEeCChHhCCCccccCCCeEEECCCCCCccccCCCCCCCCCCCEEEEec-Cc
Confidence 00 00000000 00 00 00 00 000 0 000011122222223344555555 55
Q ss_pred hhhccccchhHhHhhHhhhhhhhhCchhhCCCCcccccccCCCCeEEeecchhhhhcccccccccccCChhhHHHHHHcC
Q 036519 200 QFSNIDKADWILCNTFYELEKEVIKESEQSKLPENFSDETTQKGLVVNWCPQLGVLAHEATGCFLTHCGWNSTIEALRLG 279 (365)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~p~~~~L~~~~~~~~I~hgG~gs~~eal~~G 279 (365)
...........+++.+.+++.++++..+.+...+.+ ...++|+.+.+|+|+.++|++|++ +|||||+||++||+++|
T Consensus 235 ~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~~~~~~-~~~~~~v~~~~~~p~~~ll~~~~~--~I~hgG~~t~~Eal~~G 311 (392)
T TIGR01426 235 VFNNQPSFYRTCVEAFRDLDWHVVLSVGRGVDPADL-GELPPNVEVRQWVPQLEILKKADA--FITHGGMNSTMEALFNG 311 (392)
T ss_pred cCCCCHHHHHHHHHHHhcCCCeEEEEECCCCChhHh-ccCCCCeEEeCCCCHHHHHhhCCE--EEECCCchHHHHHHHhC
Confidence 432222233456677777776666554433222222 235688999999999999999999 99999999999999999
Q ss_pred CCeeeccccCchhhHHHHHHhHhcceeEecCCCCCcccHHHHHHHHHHHhcCHHHHHHHHHHHHc---CCCcHHHHHHHH
Q 036519 280 VPMLAMPLWTDQSTNSKYVMDVWKMGLKVPADEKGIVRREAIAHCIGEILEGDKWRNFAKEAVAK---GGSSDKNIDDFV 356 (365)
Q Consensus 280 vP~v~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~~~~~---~g~s~~~~~~~~ 356 (365)
+|+|++|...||+.||+++++. |+|+.+... ++++++|.++|+++++|++|++++++++++ .++...+++.+.
T Consensus 312 ~P~v~~p~~~dq~~~a~~l~~~-g~g~~l~~~---~~~~~~l~~ai~~~l~~~~~~~~~~~l~~~~~~~~~~~~aa~~i~ 387 (392)
T TIGR01426 312 VPMVAVPQGADQPMTARRIAEL-GLGRHLPPE---EVTAEKLREAVLAVLSDPRYAERLRKMRAEIREAGGARRAADEIE 387 (392)
T ss_pred CCEEecCCcccHHHHHHHHHHC-CCEEEeccc---cCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999999999999 999999876 899999999999999999999999887544 455666776666
Q ss_pred HHH
Q 036519 357 ANL 359 (365)
Q Consensus 357 ~~i 359 (365)
+.+
T Consensus 388 ~~~ 390 (392)
T TIGR01426 388 GFL 390 (392)
T ss_pred Hhh
Confidence 554
No 24
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-39 Score=301.46 Aligned_cols=330 Identities=20% Similarity=0.229 Sum_probs=219.5
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCccccccccCCCCCCCCeeEEEcCCC-CCCCCCCCcCCHHHHHH
Q 036519 14 LAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLHRDPSSSISIPLETISDG-YDEGRSAQAETDQAYVD 92 (365)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~~~~~~~~gi~~~~l~~~-~~~~~~~~~~~~~~~~~ 92 (365)
+|||+|+..|++||++|+++||++|.++||+|+|+|++.+.+.+++ .|+.|..++.. ......+........+.
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~-----ag~~f~~~~~~~~~~~~~~~~~~~~~~~~ 75 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEA-----AGLAFVAYPIRDSELATEDGKFAGVKSFR 75 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHHH-----hCcceeeccccCChhhhhhhhhhccchhH
Confidence 6899999999999999999999999999999999999999999997 77778887642 11101111111111111
Q ss_pred HHHHHhHH---HHHHHHHhcCCCcEEEEcCCCccHHHHHHHhCCceEEEecccHHHHHHHHHh-----------------
Q 036519 93 RFWQIGVQ---TLTELVERMNDVDCIVYDSFLPWALDVAKKFGLTGAAFLTQSCTVASIYHYV----------------- 152 (365)
Q Consensus 93 ~~~~~~~~---~l~~ll~~~~~pD~vv~D~~~~~a~~~A~~~giP~v~~~~~~~~~~~~~~~~----------------- 152 (365)
........ .+-+++.+. .||+++.|...+.+ .+++..++|++.......+........
T Consensus 76 ~~~~~~~~~~~~~~~~~~e~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (406)
T COG1819 76 RLLQQFKKLIRELLELLREL-EPDLVVDDARLSLG-LAARLLGIPVVGINVAPYTPLPAAGLPLPPVGIAGKLPIPLYPL 153 (406)
T ss_pred HHhhhhhhhhHHHHHHHHhc-chhhhhcchhhhhh-hhhhhcccchhhhhhhhccCCcccccCccccccccccccccccc
Confidence 01111121 223445555 88988888654433 777778887774322211111000000
Q ss_pred -------------h--------cccccCC----------C---------------CCCccccCCCCCCC---CCCCCCcc
Q 036519 153 -------------N--------KGLIKLP----------L---------------TGDQVFLPGLPPLD---PQDTPSFI 183 (365)
Q Consensus 153 -------------~--------~~~~~~~----------~---------------~~~~~~~pg~p~~~---~~~lp~~~ 183 (365)
+ ...+... + ++.+...+.++++. ..++|.+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~- 232 (406)
T COG1819 154 PPRLVRPLIFARSWLPKLVVRRNLGLELGLPNIRRLFASGPLLEIAYTDVLFPPGDRLPFIGPYIGPLLGEAANELPYW- 232 (406)
T ss_pred ChhhccccccchhhhhhhhhhhhccccccccchHHHhcCCCCccccccccccCCCCCCCCCcCccccccccccccCcch-
Confidence 0 0000000 0 00011111111111 1122222
Q ss_pred CCCCCchhHHHHHHHhhhhccccchhHhHhhHhhhhhhhhCchhhCCCCcccccccCCCCeEEeecchhhhhcccccccc
Q 036519 184 NDPASYPAFFDMILTRQFSNIDKADWILCNTFYELEKEVIKESEQSKLPENFSDETTQKGLVVNWCPQLGVLAHEATGCF 263 (365)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~p~~~~L~~~~~~~~ 263 (365)
....++.++..+ ++.... .+....+++++.+++.+++...+... . -....++|+++.+|+||.++|++||+ |
T Consensus 233 -~~~d~~~vyvsl-Gt~~~~-~~l~~~~~~a~~~l~~~vi~~~~~~~--~-~~~~~p~n~~v~~~~p~~~~l~~ad~--v 304 (406)
T COG1819 233 -IPADRPIVYVSL-GTVGNA-VELLAIVLEALADLDVRVIVSLGGAR--D-TLVNVPDNVIVADYVPQLELLPRADA--V 304 (406)
T ss_pred -hcCCCCeEEEEc-CCcccH-HHHHHHHHHHHhcCCcEEEEeccccc--c-ccccCCCceEEecCCCHHHHhhhcCE--E
Confidence 112344455555 554433 44557899999999999887764411 1 22457899999999999999999999 9
Q ss_pred cccCChhhHHHHHHcCCCeeeccccCchhhHHHHHHhHhcceeEecCCCCCcccHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 036519 264 LTHCGWNSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVWKMGLKVPADEKGIVRREAIAHCIGEILEGDKWRNFAKEAVA 343 (365)
Q Consensus 264 I~hgG~gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~~~~ 343 (365)
|||||+||++|||++|||+|++|...||++||.|+++. |+|+.+..+ +++++.|+++|+++|+|+.|+++++++.+
T Consensus 305 I~hGG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~~-G~G~~l~~~---~l~~~~l~~av~~vL~~~~~~~~~~~~~~ 380 (406)
T COG1819 305 IHHGGAGTTSEALYAGVPLVVIPDGADQPLNAERVEEL-GAGIALPFE---ELTEERLRAAVNEVLADDSYRRAAERLAE 380 (406)
T ss_pred EecCCcchHHHHHHcCCCEEEecCCcchhHHHHHHHHc-CCceecCcc---cCCHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999 999999988 89999999999999999999999988755
Q ss_pred cC---CCcHHHHHHHHHHHHhcc
Q 036519 344 KG---GSSDKNIDDFVANLISSK 363 (365)
Q Consensus 344 ~~---g~s~~~~~~~~~~i~~~~ 363 (365)
.. ++..+..+.+.++..++.
T Consensus 381 ~~~~~~g~~~~a~~le~~~~~~~ 403 (406)
T COG1819 381 EFKEEDGPAKAADLLEEFAREKK 403 (406)
T ss_pred HhhhcccHHHHHHHHHHHHhccc
Confidence 53 444445555555555443
No 25
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=3.2e-38 Score=303.99 Aligned_cols=330 Identities=23% Similarity=0.289 Sum_probs=185.8
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCccccccccCCCCCCCCeeEEEcCCCCCCCCCCCc-CCH-HH----
Q 036519 16 HCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLHRDPSSSISIPLETISDGYDEGRSAQA-ETD-QA---- 89 (365)
Q Consensus 16 ~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~~~~~~~~gi~~~~l~~~~~~~~~~~~-~~~-~~---- 89 (365)
||+++|. +++|+.++..|+++|++|||+||++++.... .+.. .....+.+..++.+.+....... ... ..
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPSPSS-SLNP--SKPSNIRFETYPDPYPEEEFEEIFPEFISKFFSE 77 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH-TTSEEEHHHHHH-T--------S-CCEEEE-----TT------TTHHHHHHHH
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEeeccc-cccc--ccccceeeEEEcCCcchHHHhhhhHHHHHHHhhh
Confidence 5777774 7899999999999999999999999876432 2221 12256777777654443111111 111 00
Q ss_pred ------H---HHHH---HHHhHHHH---------HHHHHhcCCCcEEEEcCCCccHHHHHHHhCCceEEEecccHH----
Q 036519 90 ------Y---VDRF---WQIGVQTL---------TELVERMNDVDCIVYDSFLPWALDVAKKFGLTGAAFLTQSCT---- 144 (365)
Q Consensus 90 ------~---~~~~---~~~~~~~l---------~~ll~~~~~pD~vv~D~~~~~a~~~A~~~giP~v~~~~~~~~---- 144 (365)
. +... ........ .+.++.. +.|++|+|.+..++..+|+.+|+|.+.+.+....
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~~-~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~~~~~~~~ 156 (500)
T PF00201_consen 78 SSFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKSE-KFDLVISDAFDPCGLALAHYLGIPVIIISSSTPMYDLS 156 (500)
T ss_dssp HCCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHHH-HHCT-EEEEEESSHHHHHHHHHHTHHHHHHCCSCSCCT
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhh-ccccceEeeccchhHHHHHHhcCCeEEEecccccchhh
Confidence 1 0000 00000011 1122222 7899999988888999999999999843221000
Q ss_pred -----------------------------------H--HHHHHHhhcccc-c-----CCCC-------------------
Q 036519 145 -----------------------------------V--ASIYHYVNKGLI-K-----LPLT------------------- 162 (365)
Q Consensus 145 -----------------------------------~--~~~~~~~~~~~~-~-----~~~~------------------- 162 (365)
. ............ . ....
T Consensus 157 ~~~~g~p~~psyvP~~~s~~~~~msf~~Ri~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~ns~~ 236 (500)
T PF00201_consen 157 SFSGGVPSPPSYVPSMFSDFSDRMSFWQRIKNFLFYLYFRFIFRYFFSPQDKLYKKYFGFPFSFRELLSNASLVLINSHP 236 (500)
T ss_dssp CCTSCCCTSTTSTTCBCCCSGTTSSSST--TTSHHHHHHHHHHHHGGGS-TTS-EEESS-GGGCHHHHHHHHHCCSSTEE
T ss_pred hhccCCCCChHHhccccccCCCccchhhhhhhhhhhhhhccccccchhhHHHHHhhhcccccccHHHHHHHHHHhhhccc
Confidence 0 000000000000 0 0000
Q ss_pred ---------CCccccCCCCCCCCCCCC----CccCCCCCchhHHHHHHHhhhhccccc-hhHhHhhHhhhhhhhhCchhh
Q 036519 163 ---------GDQVFLPGLPPLDPQDTP----SFINDPASYPAFFDMILTRQFSNIDKA-DWILCNTFYELEKEVIKESEQ 228 (365)
Q Consensus 163 ---------~~~~~~pg~p~~~~~~lp----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~ 228 (365)
++.+.+.|+...+.+.+| .++......+.++..+ |+....+++. ...++++|+.++++++|..+.
T Consensus 237 ~ld~prp~~p~v~~vGgl~~~~~~~l~~~~~~~~~~~~~~~vv~vsf-Gs~~~~~~~~~~~~~~~~~~~~~~~~iW~~~~ 315 (500)
T PF00201_consen 237 SLDFPRPLLPNVVEVGGLHIKPAKPLPEELWNFLDSSGKKGVVYVSF-GSIVSSMPEEKLKEIAEAFENLPQRFIWKYEG 315 (500)
T ss_dssp E----HHHHCTSTTGCGC-S----TCHHHHHHHTSTTTTTEEEEEE--TSSSTT-HHHHHHHHHHHHHCSTTEEEEEETC
T ss_pred cCcCCcchhhcccccCccccccccccccccchhhhccCCCCEEEEec-CcccchhHHHHHHHHHHHHhhCCCcccccccc
Confidence 111122333222233333 3554433456666677 7766555554 467899999999999998754
Q ss_pred CCCCcccccccCCCCeEEeecchhhhhcccccccccccCChhhHHHHHHcCCCeeeccccCchhhHHHHHHhHhcceeEe
Q 036519 229 SKLPENFSDETTQKGLVVNWCPQLGVLAHEATGCFLTHCGWNSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVWKMGLKV 308 (365)
Q Consensus 229 ~~~p~~~~~~~~~~~~~~~~~p~~~~L~~~~~~~~I~hgG~gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~~ 308 (365)
. ....+++|+++.+|+||.++|.|+++++||||||+||+.||+++|||+|++|+++||+.||+++++. |+|+.+
T Consensus 316 ~-----~~~~l~~n~~~~~W~PQ~~lL~hp~v~~fitHgG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~~~~-G~g~~l 389 (500)
T PF00201_consen 316 E-----PPENLPKNVLIVKWLPQNDLLAHPRVKLFITHGGLNSTQEALYHGVPMLGIPLFGDQPRNAARVEEK-GVGVVL 389 (500)
T ss_dssp S-----HGCHHHTTEEEESS--HHHHHTSTTEEEEEES--HHHHHHHHHCT--EEE-GCSTTHHHHHHHHHHT-TSEEEE
T ss_pred c-----ccccccceEEEeccccchhhhhcccceeeeeccccchhhhhhhccCCccCCCCcccCCccceEEEEE-eeEEEE
Confidence 1 1223568899999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred cCCCCCcccHHHHHHHHHHHhcCHHHHHHHHHHHHcCC-CcHHHHHHHHHHHH
Q 036519 309 PADEKGIVRREAIAHCIGEILEGDKWRNFAKEAVAKGG-SSDKNIDDFVANLI 360 (365)
Q Consensus 309 ~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~~~~~~g-~s~~~~~~~~~~i~ 360 (365)
+.. +++.++|.++|+++|+|++|++||+++++..- .....+++++..|+
T Consensus 390 ~~~---~~~~~~l~~ai~~vl~~~~y~~~a~~ls~~~~~~p~~p~~~~~~~ie 439 (500)
T PF00201_consen 390 DKN---DLTEEELRAAIREVLENPSYKENAKRLSSLFRDRPISPLERAVWWIE 439 (500)
T ss_dssp GGG---C-SHHHHHHHHHHHHHSHHHHHHHHHHHHTTT---------------
T ss_pred Eec---CCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 988 89999999999999999999999999876642 24455666665554
No 26
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=9.2e-36 Score=282.85 Aligned_cols=316 Identities=19% Similarity=0.218 Sum_probs=203.3
Q ss_pred cEEEEE-cCCCCCChHHHHHHHHHHHhCCCeEEEEeCccccccccCCCCCCCCeeEEEcCCCCCC--CCCCCc------C
Q 036519 15 AHCLVL-SYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLHRDPSSSISIPLETISDGYDE--GRSAQA------E 85 (365)
Q Consensus 15 ~~il~~-~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~~~~~~~~gi~~~~l~~~~~~--~~~~~~------~ 85 (365)
.||+.+ |.++.+|..-+-.|+++|++|||+||++++.... .... ....++..+.++..... ...... .
T Consensus 21 ~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~-~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 97 (507)
T PHA03392 21 ARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRV-YYAS--HLCGNITEIDASLSVEYFKKLVKSSAVFRKRG 97 (507)
T ss_pred ccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEeccccc-cccc--CCCCCEEEEEcCCChHHHHHHHhhhhHHHhhh
Confidence 458765 7789999999999999999999999999765321 1110 01145665555310000 000000 0
Q ss_pred ---CH----HHHHHHHHHHh-----HHHHHHHHH--hcCCCcEEEEcCCCccHHHHHHHh-CCceEEEecccHHHH--H-
Q 036519 86 ---TD----QAYVDRFWQIG-----VQTLTELVE--RMNDVDCIVYDSFLPWALDVAKKF-GLTGAAFLTQSCTVA--S- 147 (365)
Q Consensus 86 ---~~----~~~~~~~~~~~-----~~~l~~ll~--~~~~pD~vv~D~~~~~a~~~A~~~-giP~v~~~~~~~~~~--~- 147 (365)
.. ......+...+ ...+.++++ +. +.|+||+|.+..++..+|+.+ ++|+|.+++...... .
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~-kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~~~~~~~~ 176 (507)
T PHA03392 98 VVADSSTVTADNYMGLVRMISDQFDLPNVKNLIANKNN-KFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYGLAENFET 176 (507)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCCC-ceeEEEecccchhHHHHHHHhCCCCEEEEcCCCCchhHHHh
Confidence 00 00111111111 223456665 33 799999998888888899999 999887655322111 0
Q ss_pred HH-HHhhccccc-------------------------------------------CCC----C-----------------
Q 036519 148 IY-HYVNKGLIK-------------------------------------------LPL----T----------------- 162 (365)
Q Consensus 148 ~~-~~~~~~~~~-------------------------------------------~~~----~----------------- 162 (365)
.. .+....+.| +.. .
T Consensus 177 ~gg~p~~~syvP~~~~~~~~~Msf~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~~~~~~l~~~~~l~lvns~~~ 256 (507)
T PHA03392 177 MGAVSRHPVYYPNLWRSKFGNLNVWETINEIYTELRLYNEFSLLADEQNKLLKQQFGPDTPTIRELRNRVQLLFVNVHPV 256 (507)
T ss_pred hccCCCCCeeeCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCHHHHHhCCcEEEEecCcc
Confidence 00 000000000 000 0
Q ss_pred --------CCccccCCCCC--CCCCCCC----CccCCCCCchhHHHHHHHhhhh--ccc-cchhHhHhhHhhhhhhhhCc
Q 036519 163 --------GDQVFLPGLPP--LDPQDTP----SFINDPASYPAFFDMILTRQFS--NID-KADWILCNTFYELEKEVIKE 225 (365)
Q Consensus 163 --------~~~~~~pg~p~--~~~~~lp----~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~l~~~~~~~ 225 (365)
++.+.+.|+.. -....+| .|+... ..+.++..+ |+... ..+ +....+++++..++.+++|.
T Consensus 257 ~d~~rp~~p~v~~vGgi~~~~~~~~~l~~~l~~fl~~~-~~g~V~vS~-GS~~~~~~~~~~~~~~~l~a~~~l~~~viw~ 334 (507)
T PHA03392 257 FDNNRPVPPSVQYLGGLHLHKKPPQPLDDYLEEFLNNS-TNGVVYVSF-GSSIDTNDMDNEFLQMLLRTFKKLPYNVLWK 334 (507)
T ss_pred ccCCCCCCCCeeeecccccCCCCCCCCCHHHHHHHhcC-CCcEEEEEC-CCCCcCCCCCHHHHHHHHHHHHhCCCeEEEE
Confidence 00001111110 0111222 233322 223444455 55432 122 23377889999999998988
Q ss_pred hhhCCCCcccccccCCCCeEEeecchhhhhcccccccccccCChhhHHHHHHcCCCeeeccccCchhhHHHHHHhHhcce
Q 036519 226 SEQSKLPENFSDETTQKGLVVNWCPQLGVLAHEATGCFLTHCGWNSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVWKMG 305 (365)
Q Consensus 226 ~~~~~~p~~~~~~~~~~~~~~~~~p~~~~L~~~~~~~~I~hgG~gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~~G~G 305 (365)
.+.+..+ ...++|+++.+|+||.++|+|+.+++||||||+||++||+++|||+|++|+++||+.||+|+++. |+|
T Consensus 335 ~~~~~~~----~~~p~Nv~i~~w~Pq~~lL~hp~v~~fItHGG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv~~~-G~G 409 (507)
T PHA03392 335 YDGEVEA----INLPANVLTQKWFPQRAVLKHKNVKAFVTQGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKYVEL-GIG 409 (507)
T ss_pred ECCCcCc----ccCCCceEEecCCCHHHHhcCCCCCEEEecCCcccHHHHHHcCCCEEECCCCccHHHHHHHHHHc-CcE
Confidence 7643332 23678999999999999998877777999999999999999999999999999999999999999 999
Q ss_pred eEecCCCCCcccHHHHHHHHHHHhcCHHHHHHHHHHHHc
Q 036519 306 LKVPADEKGIVRREAIAHCIGEILEGDKWRNFAKEAVAK 344 (365)
Q Consensus 306 ~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~~~~~ 344 (365)
+.++.. ++++++|.++|+++++|++|+++|+++++.
T Consensus 410 ~~l~~~---~~t~~~l~~ai~~vl~~~~y~~~a~~ls~~ 445 (507)
T PHA03392 410 RALDTV---TVSAAQLVLAIVDVIENPKYRKNLKELRHL 445 (507)
T ss_pred EEeccC---CcCHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999987 899999999999999999999999988555
No 27
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=99.97 E-value=1.2e-30 Score=251.42 Aligned_cols=324 Identities=24% Similarity=0.351 Sum_probs=200.3
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCccccccccCCCCCC--------CCeeEEEcCCCCCCCCCCCcC
Q 036519 14 LAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLHRDPSSS--------ISIPLETISDGYDEGRSAQAE 85 (365)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~~~~~~~--------~gi~~~~l~~~~~~~~~~~~~ 85 (365)
..+++++++|++||++|++.+|++|+++||+||++++......... .... ..+.+...+++++. .+....
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 82 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSK-SSKSKSIKKINPPPFEFLTIPDGLPE-GWEDDD 82 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCC-cccceeeeeeecChHHhhhhhhhhcc-chHHHH
Confidence 5788899999999999999999999999999999998876655442 0000 11112121223333 211110
Q ss_pred -CHHHHHHHHHHHhHHHHHHHHHhcC-----CCcEEEEcCCCccHHHHHHHhC-CceEEEecccHHHHHHHHHhhccccc
Q 036519 86 -TDQAYVDRFWQIGVQTLTELVERMN-----DVDCIVYDSFLPWALDVAKKFG-LTGAAFLTQSCTVASIYHYVNKGLIK 158 (365)
Q Consensus 86 -~~~~~~~~~~~~~~~~l~~ll~~~~-----~pD~vv~D~~~~~a~~~A~~~g-iP~v~~~~~~~~~~~~~~~~~~~~~~ 158 (365)
........+...+...+.+...... ++|++|+|.+..|...++...+ +|...+.+.++.....+.+....+.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~p 162 (496)
T KOG1192|consen 83 LDISESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLPSPLSYVP 162 (496)
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCcCcccccC
Confidence 1111123333343434444332221 4999999998777777776664 88887776655544433221100000
Q ss_pred ------------------------------------------------CCCC----------------------------
Q 036519 159 ------------------------------------------------LPLT---------------------------- 162 (365)
Q Consensus 159 ------------------------------------------------~~~~---------------------------- 162 (365)
...+
T Consensus 163 ~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ln~~~~~~~~~~~ 242 (496)
T KOG1192|consen 163 SPFSLSSGDDMSFPERVPNLIKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGIIVNASFIFLNSNPLLDFEPRP 242 (496)
T ss_pred cccCccccccCcHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHhhhcCeEEEEccCcccCCCCCC
Confidence 0000
Q ss_pred --CCccccCCCCCCCCCC---CC-CccCCCCC--chhHHHHHHHhhhh--ccccc-hhHhHhhHhhh-hhhhhCchhhCC
Q 036519 163 --GDQVFLPGLPPLDPQD---TP-SFINDPAS--YPAFFDMILTRQFS--NIDKA-DWILCNTFYEL-EKEVIKESEQSK 230 (365)
Q Consensus 163 --~~~~~~pg~p~~~~~~---lp-~~~~~~~~--~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~l-~~~~~~~~~~~~ 230 (365)
.+.+.+.|+....... ++ .+....+. ...++..+ |+... .+++. ...+..++..+ +..++|......
T Consensus 243 ~~~~v~~IG~l~~~~~~~~~~~~~~wl~~~~~~~~~vvyvSf-GS~~~~~~lp~~~~~~l~~~l~~~~~~~FiW~~~~~~ 321 (496)
T KOG1192|consen 243 LLPKVIPIGPLHVKDSKQKSPLPLEWLDILDESRHSVVYISF-GSMVNSADLPEEQKKELAKALESLQGVTFLWKYRPDD 321 (496)
T ss_pred CCCCceEECcEEecCccccccccHHHHHHHhhccCCeEEEEC-CcccccccCCHHHHHHHHHHHHhCCCceEEEEecCCc
Confidence 0000001110000000 11 11111111 23444445 55543 34333 35577888888 444577765432
Q ss_pred ---CCcccccccCCCCeEEeecchhhh-hcccccccccccCChhhHHHHHHcCCCeeeccccCchhhHHHHHHhHhccee
Q 036519 231 ---LPENFSDETTQKGLVVNWCPQLGV-LAHEATGCFLTHCGWNSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVWKMGL 306 (365)
Q Consensus 231 ---~p~~~~~~~~~~~~~~~~~p~~~~-L~~~~~~~~I~hgG~gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~~G~G~ 306 (365)
.++++.++.++|+...+|+||.++ |.|.++++||||||+||++|++++|||+|++|+++||+.||+++++. |.|.
T Consensus 322 ~~~~~~~~~~~~~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~nSt~E~~~~GvP~v~~Plf~DQ~~Na~~i~~~-g~~~ 400 (496)
T KOG1192|consen 322 SIYFPEGLPNRGRGNVVLSKWAPQNDLLLDHPAVGGFVTHGGWNSTLESIYSGVPMVCVPLFGDQPLNARLLVRH-GGGG 400 (496)
T ss_pred chhhhhcCCCCCcCceEEecCCCcHHHhcCCCcCcEEEECCcccHHHHHHhcCCceecCCccccchhHHHHHHhC-CCEE
Confidence 234443223567888899999998 59999999999999999999999999999999999999999999999 5555
Q ss_pred EecCCCCCcccHHHHHHHHHHHhcCHHHHHHHHHHHHc
Q 036519 307 KVPADEKGIVRREAIAHCIGEILEGDKWRNFAKEAVAK 344 (365)
Q Consensus 307 ~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~~~~~ 344 (365)
.+... +++...+.+++.+++++++|++++++++..
T Consensus 401 v~~~~---~~~~~~~~~~~~~il~~~~y~~~~~~l~~~ 435 (496)
T KOG1192|consen 401 VLDKR---DLVSEELLEAIKEILENEEYKEAAKRLSEI 435 (496)
T ss_pred EEehh---hcCcHHHHHHHHHHHcChHHHHHHHHHHHH
Confidence 55555 566666999999999999999999998665
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.95 E-value=1.9e-27 Score=217.39 Aligned_cols=321 Identities=12% Similarity=0.112 Sum_probs=195.8
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCcccccc--ccCCCCCCCCeeEEEcCC-CCCCCCCCCcCCHHHH
Q 036519 14 LAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKS--LHRDPSSSISIPLETISD-GYDEGRSAQAETDQAY 90 (365)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~--v~~~~~~~~gi~~~~l~~-~~~~~~~~~~~~~~~~ 90 (365)
|.+|+|.+.|+.||++|.++||++|.++||+|+|++++...+. +.+ .|++|..++. ++.. ...+. .
T Consensus 1 ~~~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~l~~~-----~g~~~~~~~~~~l~~-----~~~~~-~ 69 (352)
T PRK12446 1 MKKIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKTIIEK-----ENIPYYSISSGKLRR-----YFDLK-N 69 (352)
T ss_pred CCeEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCccccccCcc-----cCCcEEEEeccCcCC-----CchHH-H
Confidence 4579999999999999999999999999999999998766532 332 5788888862 2221 11221 2
Q ss_pred HHHHHHHhHH--HHHHHHHhcCCCcEEEEcCC--CccHHHHHHHhCCceEEEecccHHHHHH--HHHhhcc-cccCCC--
Q 036519 91 VDRFWQIGVQ--TLTELVERMNDVDCIVYDSF--LPWALDVAKKFGLTGAAFLTQSCTVASI--YHYVNKG-LIKLPL-- 161 (365)
Q Consensus 91 ~~~~~~~~~~--~l~~ll~~~~~pD~vv~D~~--~~~a~~~A~~~giP~v~~~~~~~~~~~~--~~~~~~~-~~~~~~-- 161 (365)
+......... ....++++. +||+|++..- +.++..+|+.+|+|++.+.......... ..+.... ...++.
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~-kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n~~~g~~nr~~~~~a~~v~~~f~~~~ 148 (352)
T PRK12446 70 IKDPFLVMKGVMDAYVRIRKL-KPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESDMTPGLANKIALRFASKIFVTFEEAA 148 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-CCCEEEecCchhhHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHhhCEEEEEccchh
Confidence 2222222221 234567888 9999998743 2347999999999999865543221111 1111110 000111
Q ss_pred ---CCCccccCCCCCCCCC-CC-C----CccCCCCCchhHHHHHHHhhhh-ccccchhHhHhhHhhhhhhhhCchhhCCC
Q 036519 162 ---TGDQVFLPGLPPLDPQ-DT-P----SFINDPASYPAFFDMILTRQFS-NIDKADWILCNTFYELEKEVIKESEQSKL 231 (365)
Q Consensus 162 ---~~~~~~~pg~p~~~~~-~l-p----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 231 (365)
+...+.+.|.|-.+.. +. . ..+...+..+.++.++ |+++. .+++....++..+.. ..++++..+...+
T Consensus 149 ~~~~~~k~~~tG~Pvr~~~~~~~~~~~~~~~~l~~~~~~iLv~G-GS~Ga~~in~~~~~~l~~l~~-~~~vv~~~G~~~~ 226 (352)
T PRK12446 149 KHLPKEKVIYTGSPVREEVLKGNREKGLAFLGFSRKKPVITIMG-GSLGAKKINETVREALPELLL-KYQIVHLCGKGNL 226 (352)
T ss_pred hhCCCCCeEEECCcCCcccccccchHHHHhcCCCCCCcEEEEEC-CccchHHHHHHHHHHHHhhcc-CcEEEEEeCCchH
Confidence 0123456677632211 00 0 0111112233444455 55442 222221222222211 1334444333221
Q ss_pred CcccccccCCCCeEEeec-ch-hhhhcccccccccccCChhhHHHHHHcCCCeeecccc-----CchhhHHHHHHhHhcc
Q 036519 232 PENFSDETTQKGLVVNWC-PQ-LGVLAHEATGCFLTHCGWNSTIEALRLGVPMLAMPLW-----TDQSTNSKYVMDVWKM 304 (365)
Q Consensus 232 p~~~~~~~~~~~~~~~~~-p~-~~~L~~~~~~~~I~hgG~gs~~eal~~GvP~v~~P~~-----~DQ~~nA~~v~~~~G~ 304 (365)
.+.. ... .++.+.+|+ +. ..++.+||+ +|||||.+|++|++++|+|+|++|+. .||..||..+++. |+
T Consensus 227 ~~~~-~~~-~~~~~~~f~~~~m~~~~~~adl--vIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~~-g~ 301 (352)
T PRK12446 227 DDSL-QNK-EGYRQFEYVHGELPDILAITDF--VISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFERQ-GY 301 (352)
T ss_pred HHHH-hhc-CCcEEecchhhhHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHHHHC-CC
Confidence 1111 111 245566887 43 459999999 99999999999999999999999984 4899999999999 99
Q ss_pred eeEecCCCCCcccHHHHHHHHHHHhcCH-HHHHHHHHHHHcCCCcHHHHHHHHHHHHh
Q 036519 305 GLKVPADEKGIVRREAIAHCIGEILEGD-KWRNFAKEAVAKGGSSDKNIDDFVANLIS 361 (365)
Q Consensus 305 G~~~~~~~~~~~~~~~l~~~i~~ll~~~-~~~~~a~~~~~~~g~s~~~~~~~~~~i~~ 361 (365)
|..+... +++++.|.+++.++++|+ .++++++++... ++.+++++.|.+
T Consensus 302 ~~~l~~~---~~~~~~l~~~l~~ll~~~~~~~~~~~~~~~~-----~aa~~i~~~i~~ 351 (352)
T PRK12446 302 ASVLYEE---DVTVNSLIKHVEELSHNNEKYKTALKKYNGK-----EAIQTIIDHISE 351 (352)
T ss_pred EEEcchh---cCCHHHHHHHHHHHHcCHHHHHHHHHHcCCC-----CHHHHHHHHHHh
Confidence 9999877 899999999999999886 565555443222 455666666543
No 29
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.94 E-value=7.2e-26 Score=204.63 Aligned_cols=327 Identities=16% Similarity=0.169 Sum_probs=201.5
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCC-eEEEEeCccccccccCCCCCCCCeeEEEcCCCCCCCCCCCcCCHHHHHHH
Q 036519 15 AHCLVLSYPAQGHMNPLLQFSKRLEHNGI-KVTLVTTYFISKSLHRDPSSSISIPLETISDGYDEGRSAQAETDQAYVDR 93 (365)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~la~~L~~~Gh-~Vt~~~~~~~~~~v~~~~~~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~ 93 (365)
|+|++...++-||+.|.++|+++|.++|+ +|.+..+....+.... ...++.+..++.+-.. .......+... ..
T Consensus 1 ~~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~---~~~~~~~~~I~~~~~~-~~~~~~~~~~~-~~ 75 (357)
T COG0707 1 KKIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLV---KQYGIEFELIPSGGLR-RKGSLKLLKAP-FK 75 (357)
T ss_pred CeEEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeec---cccCceEEEEeccccc-ccCcHHHHHHH-HH
Confidence 57899999999999999999999999999 5888877666554432 1247888888744333 11111122222 22
Q ss_pred HHHHhHHHHHHHHHhcCCCcEEEEc--CCCccHHHHHHHhCCceEEEecccHHHHHH-HHHhhccccc--CC-----CCC
Q 036519 94 FWQIGVQTLTELVERMNDVDCIVYD--SFLPWALDVAKKFGLTGAAFLTQSCTVASI-YHYVNKGLIK--LP-----LTG 163 (365)
Q Consensus 94 ~~~~~~~~l~~ll~~~~~pD~vv~D--~~~~~a~~~A~~~giP~v~~~~~~~~~~~~-~~~~~~~~~~--~~-----~~~ 163 (365)
++.. ....+.++++. +||+|++- +.+.++..+|..+|||++..-........- ....+....- ++ ...
T Consensus 76 ~~~~-~~~a~~il~~~-kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEqn~~~G~ank~~~~~a~~V~~~f~~~~~~~~~ 153 (357)
T COG0707 76 LLKG-VLQARKILKKL-KPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQNAVPGLANKILSKFAKKVASAFPKLEAGVKP 153 (357)
T ss_pred HHHH-HHHHHHHHHHc-CCCEEEecCCccccHHHHHHHhCCCCEEEEecCCCcchhHHHhHHhhceeeeccccccccCCC
Confidence 2222 22467889998 99999985 455668999999999999876543322211 1111111000 11 012
Q ss_pred CccccCCCCCCCC-CCCCCccCC---CCCchhHHHHHHHhhhh-ccccchhHhHhhHhhhh--hhhhCchhhCCCCcccc
Q 036519 164 DQVFLPGLPPLDP-QDTPSFIND---PASYPAFFDMILTRQFS-NIDKADWILCNTFYELE--KEVIKESEQSKLPENFS 236 (365)
Q Consensus 164 ~~~~~pg~p~~~~-~~lp~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~p~~~~ 236 (365)
....+.|.|-.+. ...+..-.. +...+.+..++ |+++. .++ ..+......+. .+++...+.+. .+...
T Consensus 154 ~~~~~tG~Pvr~~~~~~~~~~~~~~~~~~~~~ilV~G-GS~Ga~~ln---~~v~~~~~~l~~~~~v~~~~G~~~-~~~~~ 228 (357)
T COG0707 154 ENVVVTGIPVRPEFEELPAAEVRKDGRLDKKTILVTG-GSQGAKALN---DLVPEALAKLANRIQVIHQTGKND-LEELK 228 (357)
T ss_pred CceEEecCcccHHhhccchhhhhhhccCCCcEEEEEC-CcchhHHHH---HHHHHHHHHhhhCeEEEEEcCcch-HHHHH
Confidence 2345667762221 001111000 01234444455 55542 222 23333333333 23444333332 22222
Q ss_pred cccC-CC-CeEEeecchhh-hhcccccccccccCChhhHHHHHHcCCCeeeccc-c---CchhhHHHHHHhHhcceeEec
Q 036519 237 DETT-QK-GLVVNWCPQLG-VLAHEATGCFLTHCGWNSTIEALRLGVPMLAMPL-W---TDQSTNSKYVMDVWKMGLKVP 309 (365)
Q Consensus 237 ~~~~-~~-~~~~~~~p~~~-~L~~~~~~~~I~hgG~gs~~eal~~GvP~v~~P~-~---~DQ~~nA~~v~~~~G~G~~~~ 309 (365)
.... .+ +.+.+|++.+. +|+.+|+ +||++|++|+.|+++.|+|+|.+|+ . .||..||..+++. |.|+.++
T Consensus 229 ~~~~~~~~~~v~~f~~dm~~~~~~ADL--vIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l~~~-gaa~~i~ 305 (357)
T COG0707 229 SAYNELGVVRVLPFIDDMAALLAAADL--VISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFLEKA-GAALVIR 305 (357)
T ss_pred HHHhhcCcEEEeeHHhhHHHHHHhccE--EEeCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHHHhC-CCEEEec
Confidence 2222 22 67778988775 9999999 9999999999999999999999998 2 4899999999999 9999999
Q ss_pred CCCCCcccHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 036519 310 ADEKGIVRREAIAHCIGEILEGDKWRNFAKEAVAKGGSSDKNIDDFVANLI 360 (365)
Q Consensus 310 ~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~~~~~~g~s~~~~~~~~~~i~ 360 (365)
.. ++|++.+.+.|.+++++++-.+.+++.+.+.+..+ +.+++.+.+.
T Consensus 306 ~~---~lt~~~l~~~i~~l~~~~~~l~~m~~~a~~~~~p~-aa~~i~~~~~ 352 (357)
T COG0707 306 QS---ELTPEKLAELILRLLSNPEKLKAMAENAKKLGKPD-AAERIADLLL 352 (357)
T ss_pred cc---cCCHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC-HHHHHHHHHH
Confidence 88 89999999999999998533333333333333222 4444444443
No 30
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.93 E-value=2.3e-25 Score=202.48 Aligned_cols=284 Identities=17% Similarity=0.193 Sum_probs=172.1
Q ss_pred cEEEEEcCC-CCCChHHHHHHHHHHHhCCCeEEEEeCccccccccCCCCCCCCeeEEEcCCCCCCCCCCCcCCHHHHHHH
Q 036519 15 AHCLVLSYP-AQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLHRDPSSSISIPLETISDGYDEGRSAQAETDQAYVDR 93 (365)
Q Consensus 15 ~~il~~~~~-~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~~~~~~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~ 93 (365)
|||+|...+ +.||+.++++||++| +||+|+|++.....+.+.+ . +.+..+++--.. ..+..-+.......
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~-~~~~~~~~~~~~~~ 71 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLKP-----R-FPVREIPGLGPI-QENGRLDRWKTVRN 71 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhcc-----c-cCEEEccCceEe-ccCCccchHHHHHH
Confidence 789888886 999999999999999 5999999998877666663 3 566666532111 11111222111111
Q ss_pred HH------HHhHHHHHHHHHhcCCCcEEEEcCCCccHHHHHHHhCCceEEEecccHHHH---HHH-----HHhhccccc-
Q 036519 94 FW------QIGVQTLTELVERMNDVDCIVYDSFLPWALDVAKKFGLTGAAFLTQSCTVA---SIY-----HYVNKGLIK- 158 (365)
Q Consensus 94 ~~------~~~~~~l~~ll~~~~~pD~vv~D~~~~~a~~~A~~~giP~v~~~~~~~~~~---~~~-----~~~~~~~~~- 158 (365)
.. ......+.+++++. +||+||+|. .+.+..+|+..|||++.+........ ... .........
T Consensus 72 ~~~~~~~~~~~~~~~~~~l~~~-~pDlVIsD~-~~~~~~aa~~~giP~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (318)
T PF13528_consen 72 NIRWLARLARRIRREIRWLREF-RPDLVISDF-YPLAALAARRAGIPVIVISNQYWFLHPNFWLPWDQDFGRLIERYIDR 149 (318)
T ss_pred HHHhhHHHHHHHHHHHHHHHhc-CCCEEEEcC-hHHHHHHHHhcCCCEEEEEehHHcccccCCcchhhhHHHHHHHhhhh
Confidence 11 11122334556666 999999994 45578999999999998776654321 000 000000000
Q ss_pred --CCCCCCccccCCCCCC----CCCCCCCccCC-----C-CCchhHHHHHHHhhhhccccchhHhHhhHhhhhh-hhhCc
Q 036519 159 --LPLTGDQVFLPGLPPL----DPQDTPSFIND-----P-ASYPAFFDMILTRQFSNIDKADWILCNTFYELEK-EVIKE 225 (365)
Q Consensus 159 --~~~~~~~~~~pg~p~~----~~~~lp~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~ 225 (365)
+.+....+..+..++. .....++.... . ...+.+...+ +.... ..+++.+..++. .++.-
T Consensus 150 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~iLv~~-gg~~~------~~~~~~l~~~~~~~~~v~ 222 (318)
T PF13528_consen 150 YHFPPADRRLALSFYPPLPPFFRVPFVGPIIRPEIRELPPEDEPKILVYF-GGGGP------GDLIEALKALPDYQFIVF 222 (318)
T ss_pred ccCCcccceecCCccccccccccccccCchhcccccccCCCCCCEEEEEe-CCCcH------HHHHHHHHhCCCCeEEEE
Confidence 1111111111111000 00001111110 0 0111122222 11111 145566666652 32222
Q ss_pred hhhCCCCcccccccCCCCeEEeec--chhhhhcccccccccccCChhhHHHHHHcCCCeeeccc--cCchhhHHHHHHhH
Q 036519 226 SEQSKLPENFSDETTQKGLVVNWC--PQLGVLAHEATGCFLTHCGWNSTIEALRLGVPMLAMPL--WTDQSTNSKYVMDV 301 (365)
Q Consensus 226 ~~~~~~p~~~~~~~~~~~~~~~~~--p~~~~L~~~~~~~~I~hgG~gs~~eal~~GvP~v~~P~--~~DQ~~nA~~v~~~ 301 (365)
+... .+...+|+.+.+|. +..++|+.||+ +|+|||+||++|++++|+|+|++|. ..||..||+.++++
T Consensus 223 -g~~~-----~~~~~~ni~~~~~~~~~~~~~m~~ad~--vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~~ 294 (318)
T PF13528_consen 223 -GPNA-----ADPRPGNIHVRPFSTPDFAELMAAADL--VISKGGYTTISEALALGKPALVIPRPGQDEQEYNARKLEEL 294 (318)
T ss_pred -cCCc-----ccccCCCEEEeecChHHHHHHHHhCCE--EEECCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHHC
Confidence 2111 11236788888875 55669999999 9999999999999999999999999 78999999999999
Q ss_pred hcceeEecCCCCCcccHHHHHHHHHHH
Q 036519 302 WKMGLKVPADEKGIVRREAIAHCIGEI 328 (365)
Q Consensus 302 ~G~G~~~~~~~~~~~~~~~l~~~i~~l 328 (365)
|+|+.++.+ +++++.|++.|+++
T Consensus 295 -G~~~~~~~~---~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 295 -GLGIVLSQE---DLTPERLAEFLERL 317 (318)
T ss_pred -CCeEEcccc---cCCHHHHHHHHhcC
Confidence 999999988 89999999999864
No 31
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.93 E-value=5.4e-25 Score=199.81 Aligned_cols=288 Identities=12% Similarity=0.118 Sum_probs=166.4
Q ss_pred EEEEEcC-CCCCChHHHHHHHHHHHhCCCeEEEEeCccccccccCCCCCCCCee-EEEcCCCCCCCCCCCcCCHHHHHH-
Q 036519 16 HCLVLSY-PAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLHRDPSSSISIP-LETISDGYDEGRSAQAETDQAYVD- 92 (365)
Q Consensus 16 ~il~~~~-~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~~~~~~~~gi~-~~~l~~~~~~~~~~~~~~~~~~~~- 92 (365)
||++... .++||+.|.++|+++|++ ||+|+|+++......+.. .++. +..+|. +.-......-+....+.
T Consensus 1 ril~~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~~~~~~~~-----~~~~~~~~~p~-~~~~~~~~~~~~~~~l~~ 73 (321)
T TIGR00661 1 KILYSVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGRSKNYISK-----YGFKVFETFPG-IKLKGEDGKVNIVKTLRN 73 (321)
T ss_pred CEEEEEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCCHHHhhhh-----hcCcceeccCC-ceEeecCCcCcHHHHHHh
Confidence 4667555 466999999999999999 999999998885555554 3444 333321 11101111112222221
Q ss_pred --HHHHHhHHHHHHHHHhcCCCcEEEEcCCCccHHHHHHHhCCceEEEecccHHHHHH-----H---HHhhccccc----
Q 036519 93 --RFWQIGVQTLTELVERMNDVDCIVYDSFLPWALDVAKKFGLTGAAFLTQSCTVASI-----Y---HYVNKGLIK---- 158 (365)
Q Consensus 93 --~~~~~~~~~l~~ll~~~~~pD~vv~D~~~~~a~~~A~~~giP~v~~~~~~~~~~~~-----~---~~~~~~~~~---- 158 (365)
.+.........+++++. +||+||+| ..+.+..+|+.+|||++.+..+....... . ........+
T Consensus 74 ~~~~~~~~~~~~~~~l~~~-~pDlVi~d-~~~~~~~aA~~~~iP~i~i~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (321)
T TIGR00661 74 KEYSPKKAIRREINIIREY-NPDLIISD-FEYSTVVAAKLLKIPVICISNQNYTRYPLKTDLIVYPTMAALRIFNERCER 151 (321)
T ss_pred hccccHHHHHHHHHHHHhc-CCCEEEEC-CchHHHHHHHhcCCCEEEEecchhhcCCcccchhHHHHHHHHHHhccccce
Confidence 11011122345677777 99999999 55668999999999999777654321100 0 000000000
Q ss_pred CCCCCCccccCCCCCCCCCCCC-CccC------CCCCchhHHHHHHHhhhhccccchhHhHhhHhhhhh-hhhCchhhCC
Q 036519 159 LPLTGDQVFLPGLPPLDPQDTP-SFIN------DPASYPAFFDMILTRQFSNIDKADWILCNTFYELEK-EVIKESEQSK 230 (365)
Q Consensus 159 ~~~~~~~~~~pg~p~~~~~~lp-~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~ 230 (365)
+-........++.|+... .++ +... .....+.++..+ +. .....++..+.+++. .++.. +.+.
T Consensus 152 ~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~iLv~~-g~------~~~~~l~~~l~~~~~~~~i~~-~~~~ 222 (321)
T TIGR00661 152 FIVPDYPFPYTICPKIIK-NMEGPLIRYDVDDVDNYGEDYILVYI-GF------EYRYKILELLGKIANVKFVCY-SYEV 222 (321)
T ss_pred EeeecCCCCCCCCccccc-cCCCcccchhhhccccCCCCcEEEEC-Cc------CCHHHHHHHHHhCCCeEEEEe-CCCC
Confidence 000000111122332110 011 0000 000011111112 11 112334555655543 22211 1111
Q ss_pred CCcccccccCCCCeEEeecc--hhhhhcccccccccccCChhhHHHHHHcCCCeeeccccC--chhhHHHHHHhHhccee
Q 036519 231 LPENFSDETTQKGLVVNWCP--QLGVLAHEATGCFLTHCGWNSTIEALRLGVPMLAMPLWT--DQSTNSKYVMDVWKMGL 306 (365)
Q Consensus 231 ~p~~~~~~~~~~~~~~~~~p--~~~~L~~~~~~~~I~hgG~gs~~eal~~GvP~v~~P~~~--DQ~~nA~~v~~~~G~G~ 306 (365)
. ....++|+.+.+|.+ ...+|+.|++ +|||||++|++|++++|+|++++|... ||..||+.+++. |+|+
T Consensus 223 ~----~~~~~~~v~~~~~~~~~~~~~l~~ad~--vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~-g~~~ 295 (321)
T TIGR00661 223 A----KNSYNENVEIRRITTDNFKELIKNAEL--VITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDL-GCGI 295 (321)
T ss_pred C----ccccCCCEEEEECChHHHHHHHHhCCE--EEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHC-CCEE
Confidence 1 123457888899986 4568899999 999999999999999999999999854 999999999999 9999
Q ss_pred EecCCCCCcccHHHHHHHHHHHhcCHHH
Q 036519 307 KVPADEKGIVRREAIAHCIGEILEGDKW 334 (365)
Q Consensus 307 ~~~~~~~~~~~~~~l~~~i~~ll~~~~~ 334 (365)
.++.. ++ ++.+++.++++|+.|
T Consensus 296 ~l~~~---~~---~~~~~~~~~~~~~~~ 317 (321)
T TIGR00661 296 ALEYK---EL---RLLEAILDIRNMKRY 317 (321)
T ss_pred EcChh---hH---HHHHHHHhccccccc
Confidence 99865 44 677777788877655
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.86 E-value=4.4e-20 Score=170.52 Aligned_cols=323 Identities=16% Similarity=0.175 Sum_probs=185.6
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCccc--cccccCCCCCCCCeeEEEcCC-CCCCCCCCCcCCHHHH
Q 036519 14 LAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFI--SKSLHRDPSSSISIPLETISD-GYDEGRSAQAETDQAY 90 (365)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~--~~~v~~~~~~~~gi~~~~l~~-~~~~~~~~~~~~~~~~ 90 (365)
||||+|+..+..||...++.|++.|.++||+|++++.+.. .+..++ .|++++.++. ++.. ......
T Consensus 1 ~~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~------~~~~~~ 69 (357)
T PRK00726 1 MKKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGMEARLVPK-----AGIEFHFIPSGGLRR------KGSLAN 69 (357)
T ss_pred CcEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchhhhcccc-----CCCcEEEEeccCcCC------CChHHH
Confidence 6899999999999999999999999999999999988653 222232 4777777752 1111 111111
Q ss_pred HHHHHH--HhHHHHHHHHHhcCCCcEEEEcCC--CccHHHHHHHhCCceEEEecccH---HHHHHHHHhhcccccCC---
Q 036519 91 VDRFWQ--IGVQTLTELVERMNDVDCIVYDSF--LPWALDVAKKFGLTGAAFLTQSC---TVASIYHYVNKGLIKLP--- 160 (365)
Q Consensus 91 ~~~~~~--~~~~~l~~ll~~~~~pD~vv~D~~--~~~a~~~A~~~giP~v~~~~~~~---~~~~~~~~~~~~~~~~~--- 160 (365)
+..... .....+..++++. +||+|++... .+.+..+++..++|++....... ...+.+ ...+......
T Consensus 70 l~~~~~~~~~~~~~~~~ik~~-~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~~~~~~r~~~-~~~d~ii~~~~~~ 147 (357)
T PRK00726 70 LKAPFKLLKGVLQARKILKRF-KPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQNAVPGLANKLLA-RFAKKVATAFPGA 147 (357)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-CCCEEEECCCcchhHHHHHHHHcCCCEEEEcCCCCccHHHHHHH-HHhchheECchhh
Confidence 111111 1122356677777 9999999853 33467778889999987532211 011111 1111111100
Q ss_pred ---CCCCccccCCCC--C--CCCCCCCCccCCCCCchhHHHHHHHhhhhccccchhHhHhhHhhhhhh--hhCchhhCCC
Q 036519 161 ---LTGDQVFLPGLP--P--LDPQDTPSFINDPASYPAFFDMILTRQFSNIDKADWILCNTFYELEKE--VIKESEQSKL 231 (365)
Q Consensus 161 ---~~~~~~~~pg~p--~--~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~ 231 (365)
.....+.+-+.+ . .........+......+.+.... +.... ......+..++.++... .+...+.+..
T Consensus 148 ~~~~~~~~i~vi~n~v~~~~~~~~~~~~~~~~~~~~~~i~~~g-g~~~~--~~~~~~l~~a~~~~~~~~~~~~~~G~g~~ 224 (357)
T PRK00726 148 FPEFFKPKAVVTGNPVREEILALAAPPARLAGREGKPTLLVVG-GSQGA--RVLNEAVPEALALLPEALQVIHQTGKGDL 224 (357)
T ss_pred hhccCCCCEEEECCCCChHhhcccchhhhccCCCCCeEEEEEC-CcHhH--HHHHHHHHHHHHHhhhCcEEEEEcCCCcH
Confidence 000111111111 0 00000000000001111111111 11000 00112233444444332 2222222221
Q ss_pred Ccccccc--cCCCCeEEeec-chhhhhcccccccccccCChhhHHHHHHcCCCeeeccc----cCchhhHHHHHHhHhcc
Q 036519 232 PENFSDE--TTQKGLVVNWC-PQLGVLAHEATGCFLTHCGWNSTIEALRLGVPMLAMPL----WTDQSTNSKYVMDVWKM 304 (365)
Q Consensus 232 p~~~~~~--~~~~~~~~~~~-p~~~~L~~~~~~~~I~hgG~gs~~eal~~GvP~v~~P~----~~DQ~~nA~~v~~~~G~ 304 (365)
+.+.+. .+-++.+.+|+ +..++|+.+|+ +|+|+|.++++||+++|+|+|++|. ..||..|+..+.+. |.
T Consensus 225 -~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~--~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~~-~~ 300 (357)
T PRK00726 225 -EEVRAAYAAGINAEVVPFIDDMAAAYAAADL--VICRAGASTVAELAAAGLPAILVPLPHAADDHQTANARALVDA-GA 300 (357)
T ss_pred -HHHHHHhhcCCcEEEeehHhhHHHHHHhCCE--EEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHHC-CC
Confidence 222111 22236777888 45679999999 9999999999999999999999997 46899999999999 99
Q ss_pred eeEecCCCCCcccHHHHHHHHHHHhcCHHHHHHHHHHHHcC---CCcHHHHHHHHHHH
Q 036519 305 GLKVPADEKGIVRREAIAHCIGEILEGDKWRNFAKEAVAKG---GSSDKNIDDFVANL 359 (365)
Q Consensus 305 G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~~~~~~---g~s~~~~~~~~~~i 359 (365)
|+.+..+ +++++.|.+++.++++|+++++.+.+...+. .+..+.++.+.+.+
T Consensus 301 g~~~~~~---~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (357)
T PRK00726 301 ALLIPQS---DLTPEKLAEKLLELLSDPERLEAMAEAARALGKPDAAERLADLIEELA 355 (357)
T ss_pred EEEEEcc---cCCHHHHHHHHHHHHcCHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHh
Confidence 9999877 6789999999999999988777666655443 33444444444443
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.78 E-value=9.1e-18 Score=154.66 Aligned_cols=307 Identities=17% Similarity=0.166 Sum_probs=174.1
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCccccc--cccCCCCCCCCeeEEEcCCC-CCCCCCCCcCCHHHHHH
Q 036519 16 HCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISK--SLHRDPSSSISIPLETISDG-YDEGRSAQAETDQAYVD 92 (365)
Q Consensus 16 ~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~--~v~~~~~~~~gi~~~~l~~~-~~~~~~~~~~~~~~~~~ 92 (365)
+|++.+.+..||....+.+++.|.++||+|++++...... ... ..++++..++.. +.. . .....+.
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-----~-~~~~~~~ 69 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLEARLVP-----KAGIPLHTIPVGGLRR-----K-GSLKKLK 69 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcchhhccc-----ccCCceEEEEecCcCC-----C-ChHHHHH
Confidence 5899999999999999999999999999999998764321 112 135777766521 111 1 1111111
Q ss_pred HHHH--HhHHHHHHHHHhcCCCcEEEEcCC--CccHHHHHHHhCCceEEEecccHHHH-HH-HHHhhcccccCCC-----
Q 036519 93 RFWQ--IGVQTLTELVERMNDVDCIVYDSF--LPWALDVAKKFGLTGAAFLTQSCTVA-SI-YHYVNKGLIKLPL----- 161 (365)
Q Consensus 93 ~~~~--~~~~~l~~ll~~~~~pD~vv~D~~--~~~a~~~A~~~giP~v~~~~~~~~~~-~~-~~~~~~~~~~~~~----- 161 (365)
.+.. .....+..++++. +||+|++... ..++..+|+..|+|++.......... .. .+...+..+...+
T Consensus 70 ~~~~~~~~~~~~~~~i~~~-~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~~~~~~~~~~~~~~~~~vi~~s~~~~~~ 148 (350)
T cd03785 70 APFKLLKGVLQARKILKKF-KPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQNAVPGLANRLLARFADRVALSFPETAKY 148 (350)
T ss_pred HHHHHHHHHHHHHHHHHhc-CCCEEEECCCCcchHHHHHHHHhCCCEEEEcCCCCccHHHHHHHHhhCEEEEcchhhhhc
Confidence 1111 1122456777777 9999998742 34467889999999986432211100 00 0110111110000
Q ss_pred -CCCccccCCCC---C-CCCCCCCCccCCCCCchhHHHHHHHhhhhccccchhHhHhhHhhhh---hhhhCchhhCCCCc
Q 036519 162 -TGDQVFLPGLP---P-LDPQDTPSFINDPASYPAFFDMILTRQFSNIDKADWILCNTFYELE---KEVIKESEQSKLPE 233 (365)
Q Consensus 162 -~~~~~~~pg~p---~-~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~p~ 233 (365)
....+.+-+.+ . +.................+.... +.... ......++.++..+. ..++...+.+ ..+
T Consensus 149 ~~~~~~~~i~n~v~~~~~~~~~~~~~~~~~~~~~~i~~~~-g~~~~--~~~~~~l~~a~~~l~~~~~~~~~i~G~g-~~~ 224 (350)
T cd03785 149 FPKDKAVVTGNPVREEILALDRERARLGLRPGKPTLLVFG-GSQGA--RAINEAVPEALAELLRKRLQVIHQTGKG-DLE 224 (350)
T ss_pred CCCCcEEEECCCCchHHhhhhhhHHhcCCCCCCeEEEEEC-CcHhH--HHHHHHHHHHHHHhhccCeEEEEEcCCc-cHH
Confidence 01111111111 0 00000000000011111111111 11110 011122334444443 1122222222 112
Q ss_pred cccc---ccCCCCeEEeec-chhhhhcccccccccccCChhhHHHHHHcCCCeeeccc----cCchhhHHHHHHhHhcce
Q 036519 234 NFSD---ETTQKGLVVNWC-PQLGVLAHEATGCFLTHCGWNSTIEALRLGVPMLAMPL----WTDQSTNSKYVMDVWKMG 305 (365)
Q Consensus 234 ~~~~---~~~~~~~~~~~~-p~~~~L~~~~~~~~I~hgG~gs~~eal~~GvP~v~~P~----~~DQ~~nA~~v~~~~G~G 305 (365)
.+.+ ...+|+.+.+|+ +...+|+.||+ +|+++|.+|+.||+++|+|+|+.|. ..+|..|+..+.+. |.|
T Consensus 225 ~l~~~~~~~~~~v~~~g~~~~~~~~l~~ad~--~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~~-g~g 301 (350)
T cd03785 225 EVKKAYEELGVNYEVFPFIDDMAAAYAAADL--VISRAGASTVAELAALGLPAILIPLPYAADDHQTANARALVKA-GAA 301 (350)
T ss_pred HHHHHHhccCCCeEEeehhhhHHHHHHhcCE--EEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHHhC-CCE
Confidence 2221 124688888998 55669999999 9999999999999999999999986 46789999999999 999
Q ss_pred eEecCCCCCcccHHHHHHHHHHHhcCHHHHHHHHHHHHc
Q 036519 306 LKVPADEKGIVRREAIAHCIGEILEGDKWRNFAKEAVAK 344 (365)
Q Consensus 306 ~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~~~~~ 344 (365)
+.++.. ..++++|.+++.++++|++.++.+.+.+.+
T Consensus 302 ~~v~~~---~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~ 337 (350)
T cd03785 302 VLIPQE---ELTPERLAAALLELLSDPERLKAMAEAARS 337 (350)
T ss_pred EEEecC---CCCHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 999865 568999999999999988766655544333
No 34
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.76 E-value=6.6e-17 Score=148.82 Aligned_cols=308 Identities=15% Similarity=0.138 Sum_probs=169.0
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCccccc--cccCCCCCCCCeeEEEcCCCCCCCCCCCcCCHHHHHH
Q 036519 15 AHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISK--SLHRDPSSSISIPLETISDGYDEGRSAQAETDQAYVD 92 (365)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~--~v~~~~~~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~ 92 (365)
|||+|++.+..||+...+.||++|.++||+|++++.+.... ...+ .|++++.++..-.. ...+...+.
T Consensus 1 ~~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~~~~~~~-----~g~~~~~i~~~~~~-----~~~~~~~l~ 70 (348)
T TIGR01133 1 KKVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKRGLEKRLVPK-----AGIEFYFIPVGGLR-----RKGSFRLIK 70 (348)
T ss_pred CeEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCCcchhccccc-----CCCceEEEeccCcC-----CCChHHHHH
Confidence 58999999999999988899999999999999998754321 1222 56777777521111 112222222
Q ss_pred HHHH--HhHHHHHHHHHhcCCCcEEEEcCCC--ccHHHHHHHhCCceEEEecccHH---HHHHHHHhhcccccCCCC-CC
Q 036519 93 RFWQ--IGVQTLTELVERMNDVDCIVYDSFL--PWALDVAKKFGLTGAAFLTQSCT---VASIYHYVNKGLIKLPLT-GD 164 (365)
Q Consensus 93 ~~~~--~~~~~l~~ll~~~~~pD~vv~D~~~--~~a~~~A~~~giP~v~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~ 164 (365)
.... .....+..++++. +||+|++.... .++..+++.+|+|++.+...... ..+. +...+..+...+. ..
T Consensus 71 ~~~~~~~~~~~l~~~i~~~-~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~~~~~~~~~~~~~~-~~~~d~ii~~~~~~~~ 148 (348)
T TIGR01133 71 TPLKLLKAVFQARRILKKF-KPDAVIGFGGYVSGPAGLAAKLLGIPLFHHEQNAVPGLTNKLL-SRFAKKVLISFPGAKD 148 (348)
T ss_pred HHHHHHHHHHHHHHHHHhc-CCCEEEEcCCcccHHHHHHHHHcCCCEEEECCCCCccHHHHHH-HHHhCeeEECchhHhh
Confidence 1111 1122456777877 99999987432 34666788899999864221111 1111 1111111111110 00
Q ss_pred --ccccCCCCCC----CCCCCCCccCCCCCchhHHHHHHHhhhhccccchhHhHhhHhhhhh---hhhCchhhCCCCccc
Q 036519 165 --QVFLPGLPPL----DPQDTPSFINDPASYPAFFDMILTRQFSNIDKADWILCNTFYELEK---EVIKESEQSKLPENF 235 (365)
Q Consensus 165 --~~~~pg~p~~----~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~p~~~ 235 (365)
...+.|.|.. ........+...+....+.... +.... ......+..++..+.. .++...+.+.. +.+
T Consensus 149 ~~~~~~i~n~v~~~~~~~~~~~~~~~~~~~~~~i~~~g-g~~~~--~~~~~~l~~a~~~l~~~~~~~~~~~g~~~~-~~l 224 (348)
T TIGR01133 149 HFEAVLVGNPVRQEIRSLPVPRERFGLREGKPTILVLG-GSQGA--KILNELVPKALAKLAEKGIQIVHQTGKNDL-EKV 224 (348)
T ss_pred cCCceEEcCCcCHHHhcccchhhhcCCCCCCeEEEEEC-CchhH--HHHHHHHHHHHHHHhhcCcEEEEECCcchH-HHH
Confidence 0111122100 0000000000011111111111 11100 0001223344444422 22211121111 212
Q ss_pred ccccCC-C-CeEEeec--chhhhhcccccccccccCChhhHHHHHHcCCCeeecccc---CchhhHHHHHHhHhcceeEe
Q 036519 236 SDETTQ-K-GLVVNWC--PQLGVLAHEATGCFLTHCGWNSTIEALRLGVPMLAMPLW---TDQSTNSKYVMDVWKMGLKV 308 (365)
Q Consensus 236 ~~~~~~-~-~~~~~~~--p~~~~L~~~~~~~~I~hgG~gs~~eal~~GvP~v~~P~~---~DQ~~nA~~v~~~~G~G~~~ 308 (365)
.+.... + ..++.|. +...+|+.||+ +|+++|.+|+.||+++|+|+|++|.. .+|..|+..+++. |.|..+
T Consensus 225 ~~~~~~~~l~~~v~~~~~~~~~~l~~ad~--~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~~-~~G~~~ 301 (348)
T TIGR01133 225 KNVYQELGIEAIVTFIDENMAAAYAAADL--VISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLEDL-GAGLVI 301 (348)
T ss_pred HHHHhhCCceEEecCcccCHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHHC-CCEEEE
Confidence 111111 1 1222333 55679999999 99999989999999999999999873 4788899999999 999998
Q ss_pred cCCCCCcccHHHHHHHHHHHhcCHHHHHHHHHHHHc
Q 036519 309 PADEKGIVRREAIAHCIGEILEGDKWRNFAKEAVAK 344 (365)
Q Consensus 309 ~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~~~~~ 344 (365)
+.. +.++++|.+++.++++|++.++++.+...+
T Consensus 302 ~~~---~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~ 334 (348)
T TIGR01133 302 RQK---ELLPEKLLEALLKLLLDPANLEAMAEAARK 334 (348)
T ss_pred ecc---cCCHHHHHHHHHHHHcCHHHHHHHHHHHHh
Confidence 866 678999999999999998776666554443
No 35
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.71 E-value=8.7e-17 Score=149.24 Aligned_cols=322 Identities=12% Similarity=0.038 Sum_probs=171.1
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCccccccccCCCCCCCCeeEEEcCCCCCCCCCCCcCCHHHHHHHH
Q 036519 15 AHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLHRDPSSSISIPLETISDGYDEGRSAQAETDQAYVDRF 94 (365)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~~~~~~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ 94 (365)
.||+|+.+++.||++|. +|+++|+++|++|+|++.... .+++ .....++++..++. - +.. ..+ ..+..+
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg~--~m~~-~g~~~~~~~~~l~v--~--G~~--~~l-~~~~~~ 74 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKEHYPNARFIGVAGP--RMAA-EGCEVLYSMEELSV--M--GLR--EVL-GRLGRL 74 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEccH--HHHh-CcCccccChHHhhh--c--cHH--HHH-HHHHHH
Confidence 57999999999999999 999999999999999986532 2332 00002344443331 0 110 011 122222
Q ss_pred HHHhHHHHHHHHHhcCCCcEEEE-cCCCccHHH--HHHHhCCceEEEe-------cccHH-HHHHHHHhhccccc-----
Q 036519 95 WQIGVQTLTELVERMNDVDCIVY-DSFLPWALD--VAKKFGLTGAAFL-------TQSCT-VASIYHYVNKGLIK----- 158 (365)
Q Consensus 95 ~~~~~~~l~~ll~~~~~pD~vv~-D~~~~~a~~--~A~~~giP~v~~~-------~~~~~-~~~~~~~~~~~~~~----- 158 (365)
..... ....++++. +||+||. |+....... +|+.+|||++.+. ..... .+.-+....-..++
T Consensus 75 ~~~~~-~~~~~l~~~-kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i~P~~waw~~~~~r~l~~~~d~v~~~~~~e~~~ 152 (385)
T TIGR00215 75 LKIRK-EVVQLAKQA-KPDLLVGIDAPDFNLTKELKKKDPGIKIIYYISPQVWAWRKWRAKKIEKATDFLLAILPFEKAF 152 (385)
T ss_pred HHHHH-HHHHHHHhc-CCCEEEEeCCCCccHHHHHHHhhCCCCEEEEeCCcHhhcCcchHHHHHHHHhHhhccCCCcHHH
Confidence 22222 456777777 9999995 654434334 8899999999862 21110 11000000000000
Q ss_pred CCCCCCccccCCCCCCCCCCC--C------CccCCCCCchhHHHHHHHhhhhccccchhHhHhhHhhhhhh-----hhCc
Q 036519 159 LPLTGDQVFLPGLPPLDPQDT--P------SFINDPASYPAFFDMILTRQFSNIDKADWILCNTFYELEKE-----VIKE 225 (365)
Q Consensus 159 ~~~~~~~~~~pg~p~~~~~~l--p------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~ 225 (365)
+..........|.|-.+.... + ..+......+.+..+. ++...........++.++..+... .+..
T Consensus 153 ~~~~g~~~~~vGnPv~~~~~~~~~~~~~~r~~lgl~~~~~~Ilvl~-GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~ 231 (385)
T TIGR00215 153 YQKKNVPCRFVGHPLLDAIPLYKPDRKSAREKLGIDHNGETLALLP-GSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLP 231 (385)
T ss_pred HHhcCCCEEEECCchhhhccccCCCHHHHHHHcCCCCCCCEEEEEC-CCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEE
Confidence 011011222334432111000 0 0001111112111122 222222112223334444444221 1111
Q ss_pred hhhCCCCc---ccccccCCCCeEEeec-chhhhhcccccccccccCChhhHHHHHHcCCCeeec----cccC--------
Q 036519 226 SEQSKLPE---NFSDETTQKGLVVNWC-PQLGVLAHEATGCFLTHCGWNSTIEALRLGVPMLAM----PLWT-------- 289 (365)
Q Consensus 226 ~~~~~~p~---~~~~~~~~~~~~~~~~-p~~~~L~~~~~~~~I~hgG~gs~~eal~~GvP~v~~----P~~~-------- 289 (365)
...+...+ .+.+....+..+..+. +...+|+.+|+ +|+.+|..|+ |++++|+|+|++ |+..
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~aADl--~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~~~~~ 308 (385)
T TIGR00215 232 VVNFKRRLQFEQIKAEYGPDLQLHLIDGDARKAMFAADA--ALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIARRLVK 308 (385)
T ss_pred eCCchhHHHHHHHHHHhCCCCcEEEECchHHHHHHhCCE--EeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHHHHHHc
Confidence 10010001 1111111122222221 33458999999 9999999998 999999999999 8632
Q ss_pred -chhhHHHHHHhHhcceeEecCCCCCcccHHHHHHHHHHHhcCH----HHHHHHHH----HHHc---CCCcHHHHHHHHH
Q 036519 290 -DQSTNSKYVMDVWKMGLKVPADEKGIVRREAIAHCIGEILEGD----KWRNFAKE----AVAK---GGSSDKNIDDFVA 357 (365)
Q Consensus 290 -DQ~~nA~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~----~~~~~a~~----~~~~---~g~s~~~~~~~~~ 357 (365)
.|..|+..+++. ++...+... +.|++.|.+.+.++++|+ +++++.++ +.+. .|.+.++.+.+.+
T Consensus 309 ~~~~~~~nil~~~-~~~pel~q~---~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~i~~ 384 (385)
T TIGR00215 309 TDYISLPNILANR-LLVPELLQE---ECTPHPLAIALLLLLENGLKAYKEMHRERQFFEELRQRIYCNADSERAAQAVLE 384 (385)
T ss_pred CCeeeccHHhcCC-ccchhhcCC---CCCHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhh
Confidence 377899999999 999998877 899999999999999998 66555543 3333 2456666665543
No 36
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.64 E-value=1.5e-15 Score=141.55 Aligned_cols=113 Identities=19% Similarity=0.223 Sum_probs=87.4
Q ss_pred CCCCeEEeecchh-hhhcccccccccccCChhhHHHHHHcCCCeeec-cccCchhhHHHHHHhHhcceeEecCCCCCccc
Q 036519 240 TQKGLVVNWCPQL-GVLAHEATGCFLTHCGWNSTIEALRLGVPMLAM-PLWTDQSTNSKYVMDVWKMGLKVPADEKGIVR 317 (365)
Q Consensus 240 ~~~~~~~~~~p~~-~~L~~~~~~~~I~hgG~gs~~eal~~GvP~v~~-P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~ 317 (365)
++++.+.+|+++. .++..||+ +|+.+|..|+.||+++|+|+|+. |..+.+..|+..+++. |+|+... +
T Consensus 255 ~~~v~~~g~~~~~~~l~~~aD~--~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~~-G~~~~~~-------~ 324 (380)
T PRK13609 255 PDALKVFGYVENIDELFRVTSC--MITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYFERK-GAAVVIR-------D 324 (380)
T ss_pred CCcEEEEechhhHHHHHHhccE--EEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHhC-CcEEEEC-------C
Confidence 4678888999875 69999999 99999989999999999999985 6667778899999999 9987543 5
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHc---CCCcHHHHHHHHHHHHhc
Q 036519 318 REAIAHCIGEILEGDKWRNFAKEAVAK---GGSSDKNIDDFVANLISS 362 (365)
Q Consensus 318 ~~~l~~~i~~ll~~~~~~~~a~~~~~~---~g~s~~~~~~~~~~i~~~ 362 (365)
+++|.++|.++++|++.++.+++...+ ..+.++.++.+.+.+...
T Consensus 325 ~~~l~~~i~~ll~~~~~~~~m~~~~~~~~~~~s~~~i~~~i~~~~~~~ 372 (380)
T PRK13609 325 DEEVFAKTEALLQDDMKLLQMKEAMKSLYLPEPADHIVDDILAENHVE 372 (380)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHhhhhh
Confidence 789999999999998655554433322 245566666666655543
No 37
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.63 E-value=5.5e-15 Score=137.75 Aligned_cols=319 Identities=12% Similarity=0.041 Sum_probs=156.1
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCcc--ccccccCCCCCCCCeeEEEcCCCCCCCCCCCcCCHHHHH
Q 036519 14 LAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYF--ISKSLHRDPSSSISIPLETISDGYDEGRSAQAETDQAYV 91 (365)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~--~~~~v~~~~~~~~gi~~~~l~~~~~~~~~~~~~~~~~~~ 91 (365)
+|||+|+..+..||++|.+ ++++|+++++++.+++... ..+...+ .++++..++- ..+...+
T Consensus 1 ~~ki~i~~Ggt~G~i~~a~-l~~~L~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~----------~g~~~~~ 64 (380)
T PRK00025 1 PLRIAIVAGEVSGDLLGAG-LIRALKARAPNLEFVGVGGPRMQAAGCE-----SLFDMEELAV----------MGLVEVL 64 (380)
T ss_pred CceEEEEecCcCHHHHHHH-HHHHHHhcCCCcEEEEEccHHHHhCCCc-----cccCHHHhhh----------ccHHHHH
Confidence 5899999999999999999 9999999887777765332 2222111 2233333320 1111222
Q ss_pred HH---HHHHhHHHHHHHHHhcCCCcEEEE-cCCCccH--HHHHHHhCCceEEEecccHH-----HHHHHHHhhccccc--
Q 036519 92 DR---FWQIGVQTLTELVERMNDVDCIVY-DSFLPWA--LDVAKKFGLTGAAFLTQSCT-----VASIYHYVNKGLIK-- 158 (365)
Q Consensus 92 ~~---~~~~~~~~l~~ll~~~~~pD~vv~-D~~~~~a--~~~A~~~giP~v~~~~~~~~-----~~~~~~~~~~~~~~-- 158 (365)
.. +.. ....+..++++. +||+|++ ++...+. ..+|++.|||++.+...... .........+..+.
T Consensus 65 ~~~~~~~~-~~~~~~~~l~~~-kPdivi~~~~~~~~~~~a~~a~~~~ip~i~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 142 (380)
T PRK00025 65 PRLPRLLK-IRRRLKRRLLAE-PPDVFIGIDAPDFNLRLEKKLRKAGIPTIHYVSPSVWAWRQGRAFKIAKATDHVLALF 142 (380)
T ss_pred HHHHHHHH-HHHHHHHHHHHc-CCCEEEEeCCCCCCHHHHHHHHHCCCCEEEEeCCchhhcCchHHHHHHHHHhhheeCC
Confidence 22 222 233567888888 9999875 4322343 33477889999876432100 00000001111110
Q ss_pred ------CCCCCCccccCCCCCCCCCCC-C------CccCCCCCchhHHHHHHHhhhhccccchhHhHhhHhhhhh-----
Q 036519 159 ------LPLTGDQVFLPGLPPLDPQDT-P------SFINDPASYPAFFDMILTRQFSNIDKADWILCNTFYELEK----- 220 (365)
Q Consensus 159 ------~~~~~~~~~~pg~p~~~~~~l-p------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----- 220 (365)
+......+.+.|.|..+.... + ..+......+.+..+. ++...........++.++..+..
T Consensus 143 ~~~~~~~~~~g~~~~~~G~p~~~~~~~~~~~~~~~~~l~~~~~~~~il~~~-gsr~~~~~~~~~~l~~a~~~l~~~~~~~ 221 (380)
T PRK00025 143 PFEAAFYDKLGVPVTFVGHPLADAIPLLPDRAAARARLGLDPDARVLALLP-GSRGQEIKRLLPPFLKAAQLLQQRYPDL 221 (380)
T ss_pred ccCHHHHHhcCCCeEEECcCHHHhcccccChHHHHHHcCCCCCCCEEEEEC-CCCHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 000011133344432111000 0 0000000111111111 11111111111233444444321
Q ss_pred hhhCchhhCCCCccccc---cc-CCCCeEEeecchhhhhcccccccccccCChhhHHHHHHcCCCeeeccccC-------
Q 036519 221 EVIKESEQSKLPENFSD---ET-TQKGLVVNWCPQLGVLAHEATGCFLTHCGWNSTIEALRLGVPMLAMPLWT------- 289 (365)
Q Consensus 221 ~~~~~~~~~~~p~~~~~---~~-~~~~~~~~~~p~~~~L~~~~~~~~I~hgG~gs~~eal~~GvP~v~~P~~~------- 289 (365)
+++...+.....+.+.+ .. +-++.+.. -+-..+++.||+ +|+.+|.+++ |++++|+|+|+.|-..
T Consensus 222 ~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~aDl--~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~ 297 (380)
T PRK00025 222 RFVLPLVNPKRREQIEEALAEYAGLEVTLLD-GQKREAMAAADA--ALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIA 297 (380)
T ss_pred EEEEecCChhhHHHHHHHHhhcCCCCeEEEc-ccHHHHHHhCCE--EEECccHHHH-HHHHhCCCEEEEEccCHHHHHHH
Confidence 22332221111111211 11 12232222 123468999999 9999999888 9999999999995321
Q ss_pred -chhhH-----HHHHHhHhcceeEecCCCCCcccHHHHHHHHHHHhcCHHHHHHHHH----HHH--cCCCcHHHHHHHHH
Q 036519 290 -DQSTN-----SKYVMDVWKMGLKVPADEKGIVRREAIAHCIGEILEGDKWRNFAKE----AVA--KGGSSDKNIDDFVA 357 (365)
Q Consensus 290 -DQ~~n-----A~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~----~~~--~~g~s~~~~~~~~~ 357 (365)
.|..| +..+++. +++..+... +.+++.|.+++.++++|++.++.+.+ +.+ ..|++.+.++.+.+
T Consensus 298 ~~~~~~~~~~l~~~~~~~-~~~~~~~~~---~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~ 373 (380)
T PRK00025 298 KRLVKVPYVSLPNLLAGR-ELVPELLQE---EATPEKLARALLPLLADGARRQALLEGFTELHQQLRCGADERAAQAVLE 373 (380)
T ss_pred HHHHcCCeeehHHHhcCC-CcchhhcCC---CCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 12222 2333444 444445544 68999999999999999866654433 223 33555555555555
Q ss_pred HH
Q 036519 358 NL 359 (365)
Q Consensus 358 ~i 359 (365)
.+
T Consensus 374 ~~ 375 (380)
T PRK00025 374 LL 375 (380)
T ss_pred Hh
Confidence 44
No 38
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.62 E-value=1.5e-14 Score=125.56 Aligned_cols=307 Identities=12% Similarity=0.111 Sum_probs=166.8
Q ss_pred CCCCcEEEEEcCC--CCCChHHHHHHHHHHHhC--CCeEEEEeCccccccccCCCCCCCCeeEEEcCCCCCCC-CCCCcC
Q 036519 11 SSKLAHCLVLSYP--AQGHMNPLLQFSKRLEHN--GIKVTLVTTYFISKSLHRDPSSSISIPLETISDGYDEG-RSAQAE 85 (365)
Q Consensus 11 ~~~~~~il~~~~~--~~GH~~p~l~la~~L~~~--Gh~Vt~~~~~~~~~~v~~~~~~~~gi~~~~l~~~~~~~-~~~~~~ 85 (365)
..+.+||+|.+.- +.||+.+++.||++|.+. |.+|+++++..-..-.. ...|++|+.+|.-.... +.-...
T Consensus 6 ~~~~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~----~~~gVd~V~LPsl~k~~~G~~~~~ 81 (400)
T COG4671 6 ASKRPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFP----GPAGVDFVKLPSLIKGDNGEYGLV 81 (400)
T ss_pred hhccceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCC----CcccCceEecCceEecCCCceeee
Confidence 4556799999985 779999999999999997 99999998765543333 12789999998432221 111111
Q ss_pred CHHHHHHHHHHHhHHHHHHHHHhcCCCcEEEEcCCCccH-----HHHHH--HhCCceEEEeccc-------------HHH
Q 036519 86 TDQAYVDRFWQIGVQTLTELVERMNDVDCIVYDSFLPWA-----LDVAK--KFGLTGAAFLTQS-------------CTV 145 (365)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~ll~~~~~pD~vv~D~~~~~a-----~~~A~--~~giP~v~~~~~~-------------~~~ 145 (365)
+...-...+.+.-...+-...+.. +||++|+|.+-... ..++. ..+-+++....+- .-.
T Consensus 82 d~~~~l~e~~~~Rs~lil~t~~~f-kPDi~IVd~~P~Glr~EL~ptL~yl~~~~t~~vL~lr~i~D~p~~~~~~w~~~~~ 160 (400)
T COG4671 82 DLDGDLEETKKLRSQLILSTAETF-KPDIFIVDKFPFGLRFELLPTLEYLKTTGTRLVLGLRSIRDIPQELEADWRRAET 160 (400)
T ss_pred ecCCCHHHHHHHHHHHHHHHHHhc-CCCEEEEeccccchhhhhhHHHHHHhhcCCcceeehHhhhhchhhhccchhhhHH
Confidence 111113444444344556667777 99999999664431 12222 1232232211100 000
Q ss_pred HHHHHHhhc-----ccccCCCCC----------CccccCCCC--CCCCCCCCCccCCCCCchhHHHHHHHhhhhccccch
Q 036519 146 ASIYHYVNK-----GLIKLPLTG----------DQVFLPGLP--PLDPQDTPSFINDPASYPAFFDMILTRQFSNIDKAD 208 (365)
Q Consensus 146 ~~~~~~~~~-----~~~~~~~~~----------~~~~~pg~p--~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (365)
......+++ +...+-+.. ..+...|+- +++...+|..-.. .....+...+.|.-+..+....
T Consensus 161 ~~~I~r~yD~V~v~GdP~f~d~~~~~~~~~~i~~k~~ytG~vq~~~~~~~~p~~~~p-E~~~Ilvs~GGG~dG~eLi~~~ 239 (400)
T COG4671 161 VRLINRFYDLVLVYGDPDFYDPLTEFPFAPAIRAKMRYTGFVQRSLPHLPLPPHEAP-EGFDILVSVGGGADGAELIETA 239 (400)
T ss_pred HHHHHHhheEEEEecCccccChhhcCCccHhhhhheeEeEEeeccCcCCCCCCcCCC-ccceEEEecCCChhhHHHHHHH
Confidence 001111110 000000000 001111221 0111111111100 0011111111011111111111
Q ss_pred hHhHhhHhhhhhhhhCchhhCCCCccc----ccccC--CCCeEEeecchh-hhhcccccccccccCChhhHHHHHHcCCC
Q 036519 209 WILCNTFYELEKEVIKESEQSKLPENF----SDETT--QKGLVVNWCPQL-GVLAHEATGCFLTHCGWNSTIEALRLGVP 281 (365)
Q Consensus 209 ~~~~~~~~~l~~~~~~~~~~~~~p~~~----~~~~~--~~~~~~~~~p~~-~~L~~~~~~~~I~hgG~gs~~eal~~GvP 281 (365)
.-..+...++..+.+.-.+ ..+|... ....+ +++.+..|-.+. .++..|+. +|+-||+||++|-|.+|+|
T Consensus 240 l~A~~~l~~l~~~~~ivtG-P~MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~~--vVSm~GYNTvCeILs~~k~ 316 (400)
T COG4671 240 LAAAQLLAGLNHKWLIVTG-PFMPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGARL--VVSMGGYNTVCEILSFGKP 316 (400)
T ss_pred HHHhhhCCCCCcceEEEeC-CCCCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhhe--eeecccchhhhHHHhCCCc
Confidence 1011111111111111111 1233322 22233 678888987654 59999999 9999999999999999999
Q ss_pred eeecccc---CchhhHHHHHHhHhcceeEecCCCCCcccHHHHHHHHHHHhc
Q 036519 282 MLAMPLW---TDQSTNSKYVMDVWKMGLKVPADEKGIVRREAIAHCIGEILE 330 (365)
Q Consensus 282 ~v~~P~~---~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~ 330 (365)
.+++|.. .||..-|.|++++ |+--.+.++ .++++.++++|...++
T Consensus 317 aLivPr~~p~eEQliRA~Rl~~L-GL~dvL~pe---~lt~~~La~al~~~l~ 364 (400)
T COG4671 317 ALIVPRAAPREEQLIRAQRLEEL-GLVDVLLPE---NLTPQNLADALKAALA 364 (400)
T ss_pred eEEeccCCCcHHHHHHHHHHHhc-CcceeeCcc---cCChHHHHHHHHhccc
Confidence 9999983 4999999999999 999889888 8999999999999997
No 39
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.54 E-value=1.1e-14 Score=129.25 Aligned_cols=247 Identities=16% Similarity=0.149 Sum_probs=132.1
Q ss_pred EEEEcCC----CCCChHHHHHHHHHHHhCCCeEEEEeCcccc---ccccCCCCCCCCeeEEEcCCCCCCCCCCCcCCHHH
Q 036519 17 CLVLSYP----AQGHMNPLLQFSKRLEHNGIKVTLVTTYFIS---KSLHRDPSSSISIPLETISDGYDEGRSAQAETDQA 89 (365)
Q Consensus 17 il~~~~~----~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~---~~v~~~~~~~~gi~~~~l~~~~~~~~~~~~~~~~~ 89 (365)
|+|.+-+ +.||+.+++.||++|+++||+|+|++..... +.+++ .|+++..+++. . .
T Consensus 2 i~ir~Da~~~iG~GHv~Rcl~LA~~l~~~g~~v~f~~~~~~~~~~~~i~~-----~g~~v~~~~~~--~-~--------- 64 (279)
T TIGR03590 2 ILFRADASSEIGLGHVMRCLTLARALHAQGAEVAFACKPLPGDLIDLLLS-----AGFPVYELPDE--S-S--------- 64 (279)
T ss_pred EEEEecCCccccccHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHH-----cCCeEEEecCC--C-c---------
Confidence 4554443 7899999999999999999999999986433 45555 78888888632 1 1
Q ss_pred HHHHHHHHhHHHHHHHHHhcCCCcEEEEcCCCccH--HHHHHHhCCceEEEecccHHHHH----HHHHhhc---ccccCC
Q 036519 90 YVDRFWQIGVQTLTELVERMNDVDCIVYDSFLPWA--LDVAKKFGLTGAAFLTQSCTVAS----IYHYVNK---GLIKLP 160 (365)
Q Consensus 90 ~~~~~~~~~~~~l~~ll~~~~~pD~vv~D~~~~~a--~~~A~~~giP~v~~~~~~~~~~~----~~~~~~~---~~~~~~ 160 (365)
...-...+.+++++. +||+||+|...... ....+..+.+++.+-=....... +...+.. .+..+.
T Consensus 65 -----~~~d~~~~~~~l~~~-~~d~vV~D~y~~~~~~~~~~k~~~~~l~~iDD~~~~~~~~D~vin~~~~~~~~~y~~~~ 138 (279)
T TIGR03590 65 -----RYDDALELINLLEEE-KFDILIVDHYGLDADWEKLIKEFGRKILVIDDLADRPHDCDLLLDQNLGADASDYQGLV 138 (279)
T ss_pred -----hhhhHHHHHHHHHhc-CCCEEEEcCCCCCHHHHHHHHHhCCeEEEEecCCCCCcCCCEEEeCCCCcCHhHhcccC
Confidence 011122356677777 99999999754332 23333456665554321100000 0000000 000000
Q ss_pred CCCCccccCCC--CCCCCCCCCCccCCC------CCchhHHHHHHHhhhhccccchhHhHhhHhhhhhh--hhCchhhC-
Q 036519 161 LTGDQVFLPGL--PPLDPQDTPSFINDP------ASYPAFFDMILTRQFSNIDKADWILCNTFYELEKE--VIKESEQS- 229 (365)
Q Consensus 161 ~~~~~~~~pg~--p~~~~~~lp~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~- 229 (365)
+ .....+.|. .+++. +|.... ...+.++.++.++ ........+++.+.++..+ +..-.+..
T Consensus 139 ~-~~~~~l~G~~Y~~lr~----eF~~~~~~~~~~~~~~~iLi~~GG~---d~~~~~~~~l~~l~~~~~~~~i~vv~G~~~ 210 (279)
T TIGR03590 139 P-ANCRLLLGPSYALLRE----EFYQLATANKRRKPLRRVLVSFGGA---DPDNLTLKLLSALAESQINISITLVTGSSN 210 (279)
T ss_pred c-CCCeEEecchHHhhhH----HHHHhhHhhhcccccCeEEEEeCCc---CCcCHHHHHHHHHhccccCceEEEEECCCC
Confidence 0 011112222 11110 111000 0001111112011 1111123344444443211 11111111
Q ss_pred CCCccccc--ccCCCCeEEeecchh-hhhcccccccccccCChhhHHHHHHcCCCeeeccccCchhhHHHH
Q 036519 230 KLPENFSD--ETTQKGLVVNWCPQL-GVLAHEATGCFLTHCGWNSTIEALRLGVPMLAMPLWTDQSTNSKY 297 (365)
Q Consensus 230 ~~p~~~~~--~~~~~~~~~~~~p~~-~~L~~~~~~~~I~hgG~gs~~eal~~GvP~v~~P~~~DQ~~nA~~ 297 (365)
...+.+.+ ....|+.+..|++++ .+|+.||+ +|++|| +|++|+++.|+|+|++|...+|..||+.
T Consensus 211 ~~~~~l~~~~~~~~~i~~~~~~~~m~~lm~~aDl--~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 211 PNLDELKKFAKEYPNIILFIDVENMAELMNEADL--AIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred cCHHHHHHHHHhCCCEEEEeCHHHHHHHHHHCCE--EEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 11112211 123578888999887 69999999 999999 9999999999999999999999999975
No 40
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.54 E-value=2.5e-15 Score=119.41 Aligned_cols=119 Identities=18% Similarity=0.249 Sum_probs=81.6
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCccccccccCCCCCCCCeeEEEcCCCCCCCCCCCcCCHHHHHHHH--
Q 036519 17 CLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLHRDPSSSISIPLETISDGYDEGRSAQAETDQAYVDRF-- 94 (365)
Q Consensus 17 il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~~~~~~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~-- 94 (365)
|+|++.|+.||++|+++||++|++|||+|++++++.+.+.+++ .|++|++++.+ .. ..........+...
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~-----~Gl~~~~~~~~-~~--~~~~~~~~~~~~~~~~ 72 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVEA-----AGLEFVPIPGD-SR--LPRSLEPLANLRRLAR 72 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHH-----TT-EEEESSSC-GG--GGHHHHHHHHHHCHHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceecccc-----cCceEEEecCC-cC--cCcccchhhhhhhHHH
Confidence 7899999999999999999999999999999999999999987 89999999854 11 11100111111111
Q ss_pred ----HHHhHHHHHHHHHhc----C---CCcEEEEcCCCccHHHHHHHhCCceEEEecccH
Q 036519 95 ----WQIGVQTLTELVERM----N---DVDCIVYDSFLPWALDVAKKFGLTGAAFLTQSC 143 (365)
Q Consensus 95 ----~~~~~~~l~~ll~~~----~---~pD~vv~D~~~~~a~~~A~~~giP~v~~~~~~~ 143 (365)
.......+.+..... . .+|+++.+.....+..+|+++|||++.....+.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~ 132 (139)
T PF03033_consen 73 LIRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPW 132 (139)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGG
T ss_pred HhhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCc
Confidence 111111222222211 1 678888888778899999999999999877653
No 41
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.53 E-value=4.7e-15 Score=121.62 Aligned_cols=90 Identities=22% Similarity=0.305 Sum_probs=76.7
Q ss_pred CCCeEEeecc-hhhhhcccccccccccCChhhHHHHHHcCCCeeeccccC----chhhHHHHHHhHhcceeEecCCCCCc
Q 036519 241 QKGLVVNWCP-QLGVLAHEATGCFLTHCGWNSTIEALRLGVPMLAMPLWT----DQSTNSKYVMDVWKMGLKVPADEKGI 315 (365)
Q Consensus 241 ~~~~~~~~~p-~~~~L~~~~~~~~I~hgG~gs~~eal~~GvP~v~~P~~~----DQ~~nA~~v~~~~G~G~~~~~~~~~~ 315 (365)
.++.+.+|++ ...++..||+ +|||||.||++|++++|+|+|++|... +|..||..+++. |+|+.+... .
T Consensus 55 ~~v~~~~~~~~m~~~m~~aDl--vIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~-g~~~~~~~~---~ 128 (167)
T PF04101_consen 55 PNVKVFGFVDNMAELMAAADL--VISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKK-GAAIMLDES---E 128 (167)
T ss_dssp CCCEEECSSSSHHHHHHHHSE--EEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHC-CCCCCSECC---C
T ss_pred CcEEEEechhhHHHHHHHcCE--EEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHc-CCccccCcc---c
Confidence 6889999999 6679999999 999999999999999999999999977 999999999999 999999977 7
Q ss_pred ccHHHHHHHHHHHhcCHHHHH
Q 036519 316 VRREAIAHCIGEILEGDKWRN 336 (365)
Q Consensus 316 ~~~~~l~~~i~~ll~~~~~~~ 336 (365)
.+++.|.++|.+++.++....
T Consensus 129 ~~~~~L~~~i~~l~~~~~~~~ 149 (167)
T PF04101_consen 129 LNPEELAEAIEELLSDPEKLK 149 (167)
T ss_dssp -SCCCHHHHHHCHCCCHH-SH
T ss_pred CCHHHHHHHHHHHHcCcHHHH
Confidence 889999999999999875533
No 42
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.48 E-value=3.7e-14 Score=132.31 Aligned_cols=110 Identities=14% Similarity=0.182 Sum_probs=87.5
Q ss_pred CCCeEEeecchh-hhhcccccccccccCChhhHHHHHHcCCCeeec-cccCchhhHHHHHHhHhcceeEecCCCCCcccH
Q 036519 241 QKGLVVNWCPQL-GVLAHEATGCFLTHCGWNSTIEALRLGVPMLAM-PLWTDQSTNSKYVMDVWKMGLKVPADEKGIVRR 318 (365)
Q Consensus 241 ~~~~~~~~~p~~-~~L~~~~~~~~I~hgG~gs~~eal~~GvP~v~~-P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~~ 318 (365)
+++.+.+|+++. .+++.||+ +|+..|..|+.||++.|+|+|++ |..+.|..|+..+++. |+|+... ++
T Consensus 256 ~~v~~~G~~~~~~~~~~~aDl--~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~-G~g~~~~-------~~ 325 (391)
T PRK13608 256 ENVLILGYTKHMNEWMASSQL--MITKPGGITISEGLARCIPMIFLNPAPGQELENALYFEEK-GFGKIAD-------TP 325 (391)
T ss_pred CCeEEEeccchHHHHHHhhhE--EEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhC-CcEEEeC-------CH
Confidence 577888999765 49999999 99999989999999999999998 6666777899999999 9997644 68
Q ss_pred HHHHHHHHHHhcCHHHH----HHHHHHHHcCCCcHHHHHHHHHHHHh
Q 036519 319 EAIAHCIGEILEGDKWR----NFAKEAVAKGGSSDKNIDDFVANLIS 361 (365)
Q Consensus 319 ~~l~~~i~~ll~~~~~~----~~a~~~~~~~g~s~~~~~~~~~~i~~ 361 (365)
+++.++|.++++|++.+ +++++.. +..+..+.++++.+.+.+
T Consensus 326 ~~l~~~i~~ll~~~~~~~~m~~~~~~~~-~~~s~~~i~~~l~~l~~~ 371 (391)
T PRK13608 326 EEAIKIVASLTNGNEQLTNMISTMEQDK-IKYATQTICRDLLDLIGH 371 (391)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHhhh
Confidence 89999999999987544 3344332 235567777777777654
No 43
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.45 E-value=1.9e-12 Score=120.43 Aligned_cols=88 Identities=14% Similarity=0.069 Sum_probs=68.7
Q ss_pred CeEEeecc-hhhhhcccccccccccCChhhHHHHHHcCCCeeeccccCchhhHHHHHHhH---hcceeEecCCCCCcccH
Q 036519 243 GLVVNWCP-QLGVLAHEATGCFLTHCGWNSTIEALRLGVPMLAMPLWTDQSTNSKYVMDV---WKMGLKVPADEKGIVRR 318 (365)
Q Consensus 243 ~~~~~~~p-~~~~L~~~~~~~~I~hgG~gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~---~G~G~~~~~~~~~~~~~ 318 (365)
+.+..+.. -..+++.||+ +|+.+|..| .|+.+.|+|+|++|+...|. ||..+++. .|.++.+. ..++
T Consensus 281 ~~v~~~~~~~~~~l~~ADl--vI~rSGt~T-~E~a~lg~P~Ilip~~~~q~-na~~~~~~~~l~g~~~~l~-----~~~~ 351 (396)
T TIGR03492 281 LEVLLGRGAFAEILHWADL--GIAMAGTAT-EQAVGLGKPVIQLPGKGPQF-TYGFAEAQSRLLGGSVFLA-----SKNP 351 (396)
T ss_pred eEEEechHhHHHHHHhCCE--EEECcCHHH-HHHHHhCCCEEEEeCCCCHH-HHHHHHhhHhhcCCEEecC-----CCCH
Confidence 44555543 3459999999 999999877 99999999999999877776 98877762 16666666 3456
Q ss_pred HHHHHHHHHHhcCHHHHHHHH
Q 036519 319 EAIAHCIGEILEGDKWRNFAK 339 (365)
Q Consensus 319 ~~l~~~i~~ll~~~~~~~~a~ 339 (365)
+.|.+++.++++|++.++++.
T Consensus 352 ~~l~~~l~~ll~d~~~~~~~~ 372 (396)
T TIGR03492 352 EQAAQVVRQLLADPELLERCR 372 (396)
T ss_pred HHHHHHHHHHHcCHHHHHHHH
Confidence 999999999999987665544
No 44
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.35 E-value=6.4e-12 Score=106.15 Aligned_cols=279 Identities=16% Similarity=0.164 Sum_probs=167.0
Q ss_pred cEEEEEcCC----CCCChHHHHHHHHHHHhCCCeEEEEeCccccccccCCCCCCCCeeEEEcCCCCCCCCCCCcCCHHHH
Q 036519 15 AHCLVLSYP----AQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLHRDPSSSISIPLETISDGYDEGRSAQAETDQAY 90 (365)
Q Consensus 15 ~~il~~~~~----~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~~~~~~~~gi~~~~l~~~~~~~~~~~~~~~~~~ 90 (365)
|||+|++-+ +.||+.+++.||++|.++|.+++|++.++..+.+.+ -..++.+..+ .. .+
T Consensus 1 M~V~i~~Dgg~~iGmGHV~R~l~LA~~l~k~~~~~~fl~k~~~e~~~~~---~~~~f~~~~~----~~------~n---- 63 (318)
T COG3980 1 MKVLIRCDGGLEIGMGHVMRTLTLARELEKRGFACLFLTKQDIEAIIHK---VYEGFKVLEG----RG------NN---- 63 (318)
T ss_pred CcEEEEecCCcccCcchhhhHHHHHHHHHhcCceEEEecccchhhhhhh---hhhhccceee----ec------cc----
Confidence 789999887 679999999999999999999999999887765542 0022222111 10 00
Q ss_pred HHHHHHHhHHHHHHHHHhcCCCcEEEEcCCCcc---HHHHHHHhCCceEEEecccHHHHHHHHHhhccccc-------CC
Q 036519 91 VDRFWQIGVQTLTELVERMNDVDCIVYDSFLPW---ALDVAKKFGLTGAAFLTQSCTVASIYHYVNKGLIK-------LP 160 (365)
Q Consensus 91 ~~~~~~~~~~~l~~ll~~~~~pD~vv~D~~~~~---a~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~-------~~ 160 (365)
.+++. ++|++|.|..... ...+..+++.+.+.|-.-....+.-.......... ++
T Consensus 64 --------------~ik~~-k~d~lI~Dsygl~~dd~k~ik~e~~~k~l~fDd~~~~~~~d~d~ivN~~~~a~~~y~~v~ 128 (318)
T COG3980 64 --------------LIKEE-KFDLLIFDSYGLNADDFKLIKEEAGSKILIFDDENAKSFKDNDLIVNAILNANDYYGLVP 128 (318)
T ss_pred --------------ccccc-cCCEEEEeccCCCHHHHHHHHHHhCCcEEEecCCCccchhhhHhhhhhhhcchhhccccC
Confidence 45555 9999999987765 46777789999999876554333311111111111 11
Q ss_pred CCCCccccCCCCCCCCCCCCCccCCCCC--chhHHHHHHHhhhhccccchhHhHhhHhhhhhhh-----hCchhhCCCCc
Q 036519 161 LTGDQVFLPGLPPLDPQDTPSFINDPAS--YPAFFDMILTRQFSNIDKADWILCNTFYELEKEV-----IKESEQSKLPE 233 (365)
Q Consensus 161 ~~~~~~~~pg~p~~~~~~lp~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~p~ 233 (365)
.......=|++-+++ |+|...+.. .+.....+ .+++...+ .......+..+++.- +.+ ...+-+.
T Consensus 129 ~k~~~~lGp~y~~lr----~eF~~~r~~~~~r~~r~il-I~lGGsDp--k~lt~kvl~~L~~~~~nl~iV~g-s~~p~l~ 200 (318)
T COG3980 129 NKTRYYLGPGYAPLR----PEFYALREENTERPKRDIL-ITLGGSDP--KNLTLKVLAELEQKNVNLHIVVG-SSNPTLK 200 (318)
T ss_pred cceEEEecCCceecc----HHHHHhHHHHhhcchheEE-EEccCCCh--hhhHHHHHHHhhccCeeEEEEec-CCCcchh
Confidence 111111122222221 112211100 00011111 11111111 133334444444322 222 2223333
Q ss_pred ccccccC--CCCeEEeecchh-hhhcccccccccccCChhhHHHHHHcCCCeeeccccCchhhHHHHHHhHhcceeEecC
Q 036519 234 NFSDETT--QKGLVVNWCPQL-GVLAHEATGCFLTHCGWNSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVWKMGLKVPA 310 (365)
Q Consensus 234 ~~~~~~~--~~~~~~~~~p~~-~~L~~~~~~~~I~hgG~gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~~~~ 310 (365)
+++++.. .|+.+.-..+.+ .+++.||+ .|+-|| .|++|++..|+|.+++|+...|---|..++.+ |+-..+..
T Consensus 201 ~l~k~~~~~~~i~~~~~~~dma~LMke~d~--aI~AaG-stlyEa~~lgvP~l~l~~a~NQ~~~a~~f~~l-g~~~~l~~ 276 (318)
T COG3980 201 NLRKRAEKYPNINLYIDTNDMAELMKEADL--AISAAG-STLYEALLLGVPSLVLPLAENQIATAKEFEAL-GIIKQLGY 276 (318)
T ss_pred HHHHHHhhCCCeeeEecchhHHHHHHhcch--heeccc-hHHHHHHHhcCCceEEeeeccHHHHHHHHHhc-CchhhccC
Confidence 3333222 445454444433 49999999 999877 48899999999999999999999999999999 88777764
Q ss_pred CCCCcccHHHHHHHHHHHhcCHHHHHHHHHH
Q 036519 311 DEKGIVRREAIAHCIGEILEGDKWRNFAKEA 341 (365)
Q Consensus 311 ~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~~ 341 (365)
- +++......+.++.+|...|.+....
T Consensus 277 ~----l~~~~~~~~~~~i~~d~~~rk~l~~~ 303 (318)
T COG3980 277 H----LKDLAKDYEILQIQKDYARRKNLSFG 303 (318)
T ss_pred C----CchHHHHHHHHHhhhCHHHhhhhhhc
Confidence 2 67777888888999998888776554
No 45
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.26 E-value=1e-09 Score=100.65 Aligned_cols=321 Identities=15% Similarity=0.105 Sum_probs=161.7
Q ss_pred EEEEEcCC-----CCCChHHHHHHHHHHHhCCCeEEEEeCccccccccCCCCCCCCeeEEEcCCCCCCCCCCCcCCHHHH
Q 036519 16 HCLVLSYP-----AQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLHRDPSSSISIPLETISDGYDEGRSAQAETDQAY 90 (365)
Q Consensus 16 ~il~~~~~-----~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~~~~~~~~gi~~~~l~~~~~~~~~~~~~~~~~~ 90 (365)
||++++.. ..|+-.-...++++|.++||+|+++++......... . ............... ...........
T Consensus 1 kIl~i~~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~-~~~~~~~~~~~ 76 (359)
T cd03823 1 RILVVNHLYPPRSVGGAEVVAHDLAEALAKRGHEVAVLTAGEDPPRQDK--E-VIGVVVYGRPIDEVL-RSALPRDLFHL 76 (359)
T ss_pred CeeEEcccCCcccccchHHHHHHHHHHHHhcCCceEEEeCCCCCCCccc--c-cccceeecccccccc-CCCchhhhhHH
Confidence 46666543 257888889999999999999999987655433221 0 011121111100000 00001111111
Q ss_pred HHHHHHHhHHHHHHHHHhcCCCcEEEEcCCCcc---HHHHHHHhCCceEEEecccHHHHHHHHHhh---cccc-------
Q 036519 91 VDRFWQIGVQTLTELVERMNDVDCIVYDSFLPW---ALDVAKKFGLTGAAFLTQSCTVASIYHYVN---KGLI------- 157 (365)
Q Consensus 91 ~~~~~~~~~~~l~~ll~~~~~pD~vv~D~~~~~---a~~~A~~~giP~v~~~~~~~~~~~~~~~~~---~~~~------- 157 (365)
...........+..++++. +||+|++...... ....+++.++|++................. +..+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~-~~dii~~~~~~~~~~~~~~~~~~~~~~~i~~~hd~~~~~~~~~~~~~~~d~ii~~s~~~~ 155 (359)
T cd03823 77 SDYDNPAVVAEFARLLEDF-RPDVVHFHHLQGLGVSILRAARDRGIPIVLTLHDYWLICPRQGLFKKGGDAVIAPSRFLL 155 (359)
T ss_pred HhccCHHHHHHHHHHHHHc-CCCEEEECCccchHHHHHHHHHhcCCCEEEEEeeeeeecchhhhhccCCCEEEEeCHHHH
Confidence 1222223344567777777 9999998764332 345678889999875443211000000000 0000
Q ss_pred ---c-C-CCCCCcccc-CCCCCCCCCCCCCccCCCCCchhHHHHHHHhhhhccccchhHhHhhHhhhhh-hh-hCchhhC
Q 036519 158 ---K-L-PLTGDQVFL-PGLPPLDPQDTPSFINDPASYPAFFDMILTRQFSNIDKADWILCNTFYELEK-EV-IKESEQS 229 (365)
Q Consensus 158 ---~-~-~~~~~~~~~-pg~p~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~-~~~~~~~ 229 (365)
. . ........+ .|........... .. ...+..+.+. ++... .+....++..+..+.. ++ +.-.+.+
T Consensus 156 ~~~~~~~~~~~~~~vi~n~~~~~~~~~~~~--~~-~~~~~~i~~~-G~~~~--~k~~~~li~~~~~l~~~~~~l~i~G~~ 229 (359)
T cd03823 156 DRYVANGLFAEKISVIRNGIDLDRAKRPRR--AP-PGGRLRFGFI-GQLTP--HKGVDLLLEAFKRLPRGDIELVIVGNG 229 (359)
T ss_pred HHHHHcCCCccceEEecCCcChhhcccccc--CC-CCCceEEEEE-ecCcc--ccCHHHHHHHHHHHHhcCcEEEEEcCc
Confidence 0 0 000000111 1221100000000 00 1111111122 22111 1223455666666542 11 1111111
Q ss_pred CCCccc--ccccCCCCeEEeecchhh---hhcccccccccc-----cCChhhHHHHHHcCCCeeeccccCchhhHHHHHH
Q 036519 230 KLPENF--SDETTQKGLVVNWCPQLG---VLAHEATGCFLT-----HCGWNSTIEALRLGVPMLAMPLWTDQSTNSKYVM 299 (365)
Q Consensus 230 ~~p~~~--~~~~~~~~~~~~~~p~~~---~L~~~~~~~~I~-----hgG~gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~ 299 (365)
...... .....+++.+.+|+++.. ++..+|+ +|+ -|...++.||+++|+|+|+.+. ..+...++
T Consensus 230 ~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~--~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~----~~~~e~i~ 303 (359)
T cd03823 230 LELEEESYELEGDPRVEFLGAYPQEEIDDFYAEIDV--LVVPSIWPENFPLVIREALAAGVPVIASDI----GGMAELVR 303 (359)
T ss_pred hhhhHHHHhhcCCCeEEEeCCCCHHHHHHHHHhCCE--EEEcCcccCCCChHHHHHHHCCCCEEECCC----CCHHHHhc
Confidence 111110 012346788889987554 7999999 663 2334589999999999998654 45667777
Q ss_pred hHhcceeEecCCCCCcccHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 036519 300 DVWKMGLKVPADEKGIVRREAIAHCIGEILEGDKWRNFAKEAVAKGGSSDKNIDDFVANL 359 (365)
Q Consensus 300 ~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~~~~~~g~s~~~~~~~~~~i 359 (365)
+. +.|..++. -+.+++.+++.++++|++.++.+.+.+.+.-..+...+++++..
T Consensus 304 ~~-~~g~~~~~-----~d~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (359)
T cd03823 304 DG-VNGLLFPP-----GDAEDLAAALERLIDDPDLLERLRAGIEPPRSIEDQAEEYLKLY 357 (359)
T ss_pred CC-CcEEEECC-----CCHHHHHHHHHHHHhChHHHHHHHHhHHHhhhHHHHHHHHHHHh
Confidence 77 78988884 36999999999999988655555444333323355666666554
No 46
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.24 E-value=2.8e-11 Score=112.75 Aligned_cols=109 Identities=18% Similarity=0.170 Sum_probs=83.5
Q ss_pred CCCeEEeecchhh-hhcccccccccccCChhhHHHHHHcCCCeeeccccCchh-hHHHHHHhHhcceeEecCCCCCcccH
Q 036519 241 QKGLVVNWCPQLG-VLAHEATGCFLTHCGWNSTIEALRLGVPMLAMPLWTDQS-TNSKYVMDVWKMGLKVPADEKGIVRR 318 (365)
Q Consensus 241 ~~~~~~~~~p~~~-~L~~~~~~~~I~hgG~gs~~eal~~GvP~v~~P~~~DQ~-~nA~~v~~~~G~G~~~~~~~~~~~~~ 318 (365)
.++.+.+|+++.. ++..+|+ +|+.+|.+|+.||+++|+|+|+.+....|. .|+..+.+. |.|+... ++
T Consensus 265 ~~v~~~G~~~~~~~l~~aaDv--~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~~-g~g~~~~-------~~ 334 (382)
T PLN02605 265 IPVKVRGFVTNMEEWMGACDC--IITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVDN-GFGAFSE-------SP 334 (382)
T ss_pred CCeEEEeccccHHHHHHhCCE--EEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHHhC-CceeecC-------CH
Confidence 4677888988654 9999999 999999999999999999999998766665 699999999 9997542 68
Q ss_pred HHHHHHHHHHhcC-HHHHHHHHHHHHc---CCCcHHHHHHHHHHH
Q 036519 319 EAIAHCIGEILEG-DKWRNFAKEAVAK---GGSSDKNIDDFVANL 359 (365)
Q Consensus 319 ~~l~~~i~~ll~~-~~~~~~a~~~~~~---~g~s~~~~~~~~~~i 359 (365)
++|.++|.++++| ++.++++++.+.+ ..++.+.++.+.+.+
T Consensus 335 ~~la~~i~~ll~~~~~~~~~m~~~~~~~~~~~a~~~i~~~l~~~~ 379 (382)
T PLN02605 335 KEIARIVAEWFGDKSDELEAMSENALKLARPEAVFDIVHDLHELV 379 (382)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCchHHHHHHHHHHHh
Confidence 9999999999987 7655555444333 233444455554443
No 47
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.22 E-value=1.1e-09 Score=100.67 Aligned_cols=139 Identities=16% Similarity=0.127 Sum_probs=91.7
Q ss_pred hhHhHhhHhhhhhh--h-hCchhhCCCCcccccccCCCCeEEeecchhh---hhcccccccccccCC----hhhHHHHHH
Q 036519 208 DWILCNTFYELEKE--V-IKESEQSKLPENFSDETTQKGLVVNWCPQLG---VLAHEATGCFLTHCG----WNSTIEALR 277 (365)
Q Consensus 208 ~~~~~~~~~~l~~~--~-~~~~~~~~~p~~~~~~~~~~~~~~~~~p~~~---~L~~~~~~~~I~hgG----~gs~~eal~ 277 (365)
...++..+..+..+ + +.-.+.+...+.+. ....++.+.+|+++.+ ++..+|+ +|+.+. .+++.||++
T Consensus 212 ~~~~i~~~~~l~~~~~~~l~i~G~~~~~~~~~-~~~~~v~~~g~~~~~~~~~~~~~~d~--~l~~s~~e~~~~~~lEa~a 288 (364)
T cd03814 212 LEALLDADLPLRRRPPVRLVIVGDGPARARLE-ARYPNVHFLGFLDGEELAAAYASADV--FVFPSRTETFGLVVLEAMA 288 (364)
T ss_pred HHHHHHHHHHhhhcCCceEEEEeCCchHHHHh-ccCCcEEEEeccCHHHHHHHHHhCCE--EEECcccccCCcHHHHHHH
Confidence 35567777776532 1 11112121112121 3457888999988664 8999999 886654 478999999
Q ss_pred cCCCeeeccccCchhhHHHHHHhHhcceeEecCCCCCcccHHHHHHHHHHHhcCHHHHHHHHHHHH---cCCCcHHHHHH
Q 036519 278 LGVPMLAMPLWTDQSTNSKYVMDVWKMGLKVPADEKGIVRREAIAHCIGEILEGDKWRNFAKEAVA---KGGSSDKNIDD 354 (365)
Q Consensus 278 ~GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~~~~---~~g~s~~~~~~ 354 (365)
+|+|+|+.+.. .+...+++. +.|...+. -+.+++.+++.++++|++.++.+.+.+. +.-+.....++
T Consensus 289 ~g~PvI~~~~~----~~~~~i~~~-~~g~~~~~-----~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (364)
T cd03814 289 SGLPVVAPDAG----GPADIVTDG-ENGLLVEP-----GDAEAFAAALAALLADPELRRRMAARARAEAERRSWEAFLDN 358 (364)
T ss_pred cCCCEEEcCCC----CchhhhcCC-cceEEcCC-----CCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence 99999987754 456677888 89988874 4788899999999998755444433222 23455666666
Q ss_pred HHHHH
Q 036519 355 FVANL 359 (365)
Q Consensus 355 ~~~~i 359 (365)
+++.+
T Consensus 359 ~~~~~ 363 (364)
T cd03814 359 LLEAY 363 (364)
T ss_pred HHHhh
Confidence 66543
No 48
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.04 E-value=2.7e-08 Score=93.03 Aligned_cols=104 Identities=14% Similarity=0.132 Sum_probs=74.9
Q ss_pred CCCCeEEeecchhh---hhccccccccccc----CChhhHHHHHHcCCCeeeccccCchhhHHHHHHhHhcceeEecCCC
Q 036519 240 TQKGLVVNWCPQLG---VLAHEATGCFLTH----CGWNSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVWKMGLKVPADE 312 (365)
Q Consensus 240 ~~~~~~~~~~p~~~---~L~~~~~~~~I~h----gG~gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~ 312 (365)
.+++.+.+|+|+.+ ++..+|+ +++. |-..++.||+++|+|+|+... ......+++. +.|..++.
T Consensus 282 ~~~v~~~g~~~~~~~~~~~~~adi--~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~----~~~~e~i~~~-~~g~~~~~-- 352 (398)
T cd03800 282 IDRVDFPGRVSREDLPALYRAADV--FVNPALYEPFGLTALEAMACGLPVVATAV----GGPRDIVVDG-VTGLLVDP-- 352 (398)
T ss_pred CceEEEeccCCHHHHHHHHHhCCE--EEecccccccCcHHHHHHhcCCCEEECCC----CCHHHHccCC-CCeEEeCC--
Confidence 36788889998765 6899999 7744 334689999999999987654 3456678887 88988874
Q ss_pred CCcccHHHHHHHHHHHhcCHH----HHHHHHHHHHcCCCcHHHHHHH
Q 036519 313 KGIVRREAIAHCIGEILEGDK----WRNFAKEAVAKGGSSDKNIDDF 355 (365)
Q Consensus 313 ~~~~~~~~l~~~i~~ll~~~~----~~~~a~~~~~~~g~s~~~~~~~ 355 (365)
-+.+++.++|.++++|++ +.+++++...+.-+.+...+++
T Consensus 353 ---~~~~~l~~~i~~l~~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~ 396 (398)
T cd03800 353 ---RDPEALAAALRRLLTDPALRRRLSRAGLRRARARYTWERVAARL 396 (398)
T ss_pred ---CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 469999999999998874 3444444443444444444443
No 49
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.03 E-value=7.3e-09 Score=99.20 Aligned_cols=104 Identities=14% Similarity=0.077 Sum_probs=72.1
Q ss_pred CCCeEEeecchhh---hhcccccccccccCC----hhhHHHHHHcCCCeeeccccCchhhHHHHHHh---HhcceeEecC
Q 036519 241 QKGLVVNWCPQLG---VLAHEATGCFLTHCG----WNSTIEALRLGVPMLAMPLWTDQSTNSKYVMD---VWKMGLKVPA 310 (365)
Q Consensus 241 ~~~~~~~~~p~~~---~L~~~~~~~~I~hgG----~gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~---~~G~G~~~~~ 310 (365)
.++.+.+|+++.+ +|..+|+ +|.-.. ..++.||+++|+|+|+.... .....+++ . +.|..++.
T Consensus 312 ~~V~f~G~v~~~ev~~~~~~aDv--~V~pS~~E~~g~~vlEAmA~G~PVI~s~~g----g~~eiv~~~~~~-~~G~lv~~ 384 (465)
T PLN02871 312 TPTVFTGMLQGDELSQAYASGDV--FVMPSESETLGFVVLEAMASGVPVVAARAG----GIPDIIPPDQEG-KTGFLYTP 384 (465)
T ss_pred CCeEEeccCCHHHHHHHHHHCCE--EEECCcccccCcHHHHHHHcCCCEEEcCCC----CcHhhhhcCCCC-CceEEeCC
Confidence 4677888987553 8999999 775432 45789999999999987542 34445666 7 88888874
Q ss_pred CCCCcccHHHHHHHHHHHhcCHH----HHHHHHHHHHcCCCcHHHHHHHHH
Q 036519 311 DEKGIVRREAIAHCIGEILEGDK----WRNFAKEAVAKGGSSDKNIDDFVA 357 (365)
Q Consensus 311 ~~~~~~~~~~l~~~i~~ll~~~~----~~~~a~~~~~~~g~s~~~~~~~~~ 357 (365)
-+++++.++|.++++|++ +.+++++.+++ =+-+..++++.+
T Consensus 385 -----~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~-fsw~~~a~~l~~ 429 (465)
T PLN02871 385 -----GDVDDCVEKLETLLADPELRERMGAAAREEVEK-WDWRAATRKLRN 429 (465)
T ss_pred -----CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHh-CCHHHHHHHHHH
Confidence 368999999999999874 44455544433 233344444443
No 50
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.03 E-value=4.1e-08 Score=89.65 Aligned_cols=306 Identities=15% Similarity=0.120 Sum_probs=156.5
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCccccc-cccCCCCCCCCeeEEEcCCCCCCCCCCCcCCHHHHHHHH
Q 036519 16 HCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISK-SLHRDPSSSISIPLETISDGYDEGRSAQAETDQAYVDRF 94 (365)
Q Consensus 16 ~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~-~v~~~~~~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ 94 (365)
||++++....|+......++++|.++||+|++++...... .... .++.+..++..... ......+..
T Consensus 1 kIl~i~~~~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~------~~~~~~~~~- 68 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKALRAAGYEVHVVAPPGDELEELEA-----LGVKVIPIPLDRRG------INPFKDLKA- 68 (359)
T ss_pred CeeEEEecchhHHHHHHHHHHHHHhcCCeeEEEecCCCccccccc-----CCceEEeccccccc------cChHhHHHH-
Confidence 5788888888999999999999999999999998776554 2333 56777776522100 111111111
Q ss_pred HHHhHHHHHHHHHhcCCCcEEEEcCCCc--cHHHHHHHhCCceEEEecccHHHH-H------HHHHh--------hcccc
Q 036519 95 WQIGVQTLTELVERMNDVDCIVYDSFLP--WALDVAKKFGLTGAAFLTQSCTVA-S------IYHYV--------NKGLI 157 (365)
Q Consensus 95 ~~~~~~~l~~ll~~~~~pD~vv~D~~~~--~a~~~A~~~giP~v~~~~~~~~~~-~------~~~~~--------~~~~~ 157 (365)
...+..++++. +||+|++..... ++..+++..+.|.+.+........ . ..... .+..+
T Consensus 69 ----~~~~~~~~~~~-~~dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii 143 (359)
T cd03808 69 ----LLRLYRLLRKE-RPDIVHTHTPKPGILGRLAARLAGVPKVIYTVHGLGFVFTSGGLKRRLYLLLERLALRFTDKVI 143 (359)
T ss_pred ----HHHHHHHHHhc-CCCEEEEccccchhHHHHHHHHcCCCCEEEEecCcchhhccchhHHHHHHHHHHHHHhhccEEE
Confidence 12345666666 999999874432 245555546666554432211100 0 00000 00000
Q ss_pred cCC-------------CCCCccccCCCCCCCCCCCCCccCCCCCchhHHHHHHHhhhhccccchhHhHhhHhhhhh---h
Q 036519 158 KLP-------------LTGDQVFLPGLPPLDPQDTPSFINDPASYPAFFDMILTRQFSNIDKADWILCNTFYELEK---E 221 (365)
Q Consensus 158 ~~~-------------~~~~~~~~pg~p~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~ 221 (365)
..+ +....+.+++.. .+..............+..+.+. |+... .+....++..+..+.. +
T Consensus 144 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~-G~~~~--~k~~~~li~~~~~l~~~~~~ 219 (359)
T cd03808 144 FQNEDDRDLALKLGIIKKKKTVLIPGSG-VDLDRFSPSPEPIPEDDPVFLFV-ARLLK--DKGIDELLEAARILKAKGPN 219 (359)
T ss_pred EcCHHHHHHHHHhcCCCcCceEEecCCC-CChhhcCccccccCCCCcEEEEE-ecccc--ccCHHHHHHHHHHHHhcCCC
Confidence 000 000111111111 11000100000001111111222 22111 1233455666666532 1
Q ss_pred h-hCchhhCCCCccc-----cc-ccCCCCeEEeecch-hhhhcccccccccccCC----hhhHHHHHHcCCCeeeccccC
Q 036519 222 V-IKESEQSKLPENF-----SD-ETTQKGLVVNWCPQ-LGVLAHEATGCFLTHCG----WNSTIEALRLGVPMLAMPLWT 289 (365)
Q Consensus 222 ~-~~~~~~~~~p~~~-----~~-~~~~~~~~~~~~p~-~~~L~~~~~~~~I~hgG----~gs~~eal~~GvP~v~~P~~~ 289 (365)
+ +.-.+.+...... .. ....++...++..+ ..++..+|+ +|..+. .+++.||+++|+|+|+-+..
T Consensus 220 ~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi--~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~- 296 (359)
T cd03808 220 VRLLLVGDGDEENPAAILEIEKLGLEGRVEFLGFRDDVPELLAAADV--FVLPSYREGLPRVLLEAMAMGRPVIATDVP- 296 (359)
T ss_pred eEEEEEcCCCcchhhHHHHHHhcCCcceEEEeeccccHHHHHHhccE--EEecCcccCcchHHHHHHHcCCCEEEecCC-
Confidence 1 1111111111110 01 12356666666443 358999999 775443 68999999999999986543
Q ss_pred chhhHHHHHHhHhcceeEecCCCCCcccHHHHHHHHHHHhcCHHH----HHHHHHHHHcCCCcHHHHHH
Q 036519 290 DQSTNSKYVMDVWKMGLKVPADEKGIVRREAIAHCIGEILEGDKW----RNFAKEAVAKGGSSDKNIDD 354 (365)
Q Consensus 290 DQ~~nA~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~----~~~a~~~~~~~g~s~~~~~~ 354 (365)
.+...+++. +.|..++. -+++++.+++.++++|++. .+++++...+.=+.....++
T Consensus 297 ---~~~~~i~~~-~~g~~~~~-----~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 356 (359)
T cd03808 297 ---GCREAVIDG-VNGFLVPP-----GDAEALADAIERLIEDPELRARMGQAARKRAEEEFDEEIVVKK 356 (359)
T ss_pred ---CchhhhhcC-cceEEECC-----CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 345666767 88888773 4799999999999988743 34444443444444444443
No 51
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.01 E-value=4.5e-08 Score=89.56 Aligned_cols=109 Identities=24% Similarity=0.247 Sum_probs=79.7
Q ss_pred cCCCCeEEeecchh---hhhcccccccccc----cCChhhHHHHHHcCCCeeeccccCchhhHHHHHHhHhcceeEecCC
Q 036519 239 TTQKGLVVNWCPQL---GVLAHEATGCFLT----HCGWNSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVWKMGLKVPAD 311 (365)
Q Consensus 239 ~~~~~~~~~~~p~~---~~L~~~~~~~~I~----hgG~gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~~~~~ 311 (365)
.++++.+.+++++. .++..+++ +|+ -|..+++.||+++|+|+|+.+. ..++..+++. +.|...+.
T Consensus 254 ~~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~~~~-~~g~~~~~- 325 (374)
T cd03801 254 LGDRVTFLGFVPDEDLPALYAAADV--FVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVVEDG-ETGLLVPP- 325 (374)
T ss_pred CCcceEEEeccChhhHHHHHHhcCE--EEecchhccccchHHHHHHcCCcEEEeCC----CChhHHhcCC-cceEEeCC-
Confidence 45788888999755 38999999 663 3567899999999999998765 4566677777 88888884
Q ss_pred CCCcccHHHHHHHHHHHhcCHHHH----HHHHHHHHcCCCcHHHHHHHHHHH
Q 036519 312 EKGIVRREAIAHCIGEILEGDKWR----NFAKEAVAKGGSSDKNIDDFVANL 359 (365)
Q Consensus 312 ~~~~~~~~~l~~~i~~ll~~~~~~----~~a~~~~~~~g~s~~~~~~~~~~i 359 (365)
.+++++.+++.++++|++.+ +++++...+.-+-+...+++++.+
T Consensus 326 ----~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (374)
T cd03801 326 ----GDPEALAEAILRLLDDPELRRRLGEAARERVAERFSWDRVAARTEEVY 373 (374)
T ss_pred ----CCHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhh
Confidence 46999999999999887543 333333344455666666666654
No 52
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=98.99 E-value=4.5e-08 Score=90.56 Aligned_cols=87 Identities=24% Similarity=0.202 Sum_probs=63.5
Q ss_pred CCCCeEEeecchhh---hhcccccccccccCC---------hhhHHHHHHcCCCeeeccccCchhhHHHHHHhHhcceeE
Q 036519 240 TQKGLVVNWCPQLG---VLAHEATGCFLTHCG---------WNSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVWKMGLK 307 (365)
Q Consensus 240 ~~~~~~~~~~p~~~---~L~~~~~~~~I~hgG---------~gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~ 307 (365)
..++.+.+++++.. ++..+|+ +|.... .+++.||+++|+|+|+.+..+. ...+.+. +.|..
T Consensus 274 ~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~----~~~~~~~-~~g~~ 346 (394)
T cd03794 274 LDNVTFLGRVPKEELPELLAAADV--GLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGES----AELVEEA-GAGLV 346 (394)
T ss_pred CCcEEEeCCCChHHHHHHHHhhCe--eEEeccCcccccccCchHHHHHHHCCCcEEEecCCCc----hhhhccC-CcceE
Confidence 36788888987654 7899999 664322 3447999999999999876543 3344555 67777
Q ss_pred ecCCCCCcccHHHHHHHHHHHhcCHHHHHHH
Q 036519 308 VPADEKGIVRREAIAHCIGEILEGDKWRNFA 338 (365)
Q Consensus 308 ~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a 338 (365)
++. -+.+++.+++.++++|++.++++
T Consensus 347 ~~~-----~~~~~l~~~i~~~~~~~~~~~~~ 372 (394)
T cd03794 347 VPP-----GDPEALAAAILELLDDPEERAEM 372 (394)
T ss_pred eCC-----CCHHHHHHHHHHHHhChHHHHHH
Confidence 773 47899999999999887544433
No 53
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.99 E-value=8.6e-08 Score=88.87 Aligned_cols=110 Identities=21% Similarity=0.202 Sum_probs=78.5
Q ss_pred CCCCeEEeecchh-hhhccccccccccc----CChhhHHHHHHcCCCeeeccccCchhhHHHHHHhHhcceeEecCCCCC
Q 036519 240 TQKGLVVNWCPQL-GVLAHEATGCFLTH----CGWNSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVWKMGLKVPADEKG 314 (365)
Q Consensus 240 ~~~~~~~~~~p~~-~~L~~~~~~~~I~h----gG~gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~ 314 (365)
.+++.+.++.+.. .++..+|+ +|.- |...++.||+++|+|+|+... ...+..+++. ..|...+.
T Consensus 252 ~~~v~~~g~~~~~~~~~~~~d~--~v~ps~~E~~~~~~~EAma~g~PvI~s~~----~~~~e~i~~~-~~G~~~~~---- 320 (371)
T cd04962 252 QDDVLFLGKQDHVEELLSIADL--FLLPSEKESFGLAALEAMACGVPVVASNA----GGIPEVVKHG-ETGFLVDV---- 320 (371)
T ss_pred CceEEEecCcccHHHHHHhcCE--EEeCCCcCCCccHHHHHHHcCCCEEEeCC----CCchhhhcCC-CceEEcCC----
Confidence 3567777776643 48999999 6632 345699999999999998644 4566677776 77877763
Q ss_pred cccHHHHHHHHHHHhcCHH----HHHHHHHHHHcCCCcHHHHHHHHHHHHh
Q 036519 315 IVRREAIAHCIGEILEGDK----WRNFAKEAVAKGGSSDKNIDDFVANLIS 361 (365)
Q Consensus 315 ~~~~~~l~~~i~~ll~~~~----~~~~a~~~~~~~g~s~~~~~~~~~~i~~ 361 (365)
-+.+++.+++.++++|++ +++++++...+.-+.....+++.+..++
T Consensus 321 -~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~y~~ 370 (371)
T cd04962 321 -GDVEAMAEYALSLLEDDELWQEFSRAARNRAAERFDSERIVPQYEALYRR 370 (371)
T ss_pred -CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 478999999999998874 4555555545555666667777666543
No 54
>PRK10307 putative glycosyl transferase; Provisional
Probab=98.96 E-value=1.2e-07 Score=89.32 Aligned_cols=112 Identities=15% Similarity=0.138 Sum_probs=78.4
Q ss_pred CCCeEEeecchhh---hhcccccccccccCCh------hhHHHHHHcCCCeeeccccCchhhHHHHHHhHhcceeEecCC
Q 036519 241 QKGLVVNWCPQLG---VLAHEATGCFLTHCGW------NSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVWKMGLKVPAD 311 (365)
Q Consensus 241 ~~~~~~~~~p~~~---~L~~~~~~~~I~hgG~------gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~~~~~ 311 (365)
+|+.+.+|+++.. ++..+|+.++.+..+. +.+.|++++|+|+|+....+.. ....++ +.|+.++.
T Consensus 284 ~~v~f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~~--~~~~i~---~~G~~~~~- 357 (412)
T PRK10307 284 PNVHFLPLQPYDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGTE--LGQLVE---GIGVCVEP- 357 (412)
T ss_pred CceEEeCCCCHHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCch--HHHHHh---CCcEEeCC-
Confidence 4788888988653 7899998444444332 3478999999999998653311 122333 56777774
Q ss_pred CCCcccHHHHHHHHHHHhcCH----HHHHHHHHHHHcCCCcHHHHHHHHHHHHhc
Q 036519 312 EKGIVRREAIAHCIGEILEGD----KWRNFAKEAVAKGGSSDKNIDDFVANLISS 362 (365)
Q Consensus 312 ~~~~~~~~~l~~~i~~ll~~~----~~~~~a~~~~~~~g~s~~~~~~~~~~i~~~ 362 (365)
-+++++.++|.++++|+ ++++++++.+++-=+.+..++++++.+++.
T Consensus 358 ----~d~~~la~~i~~l~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~ 408 (412)
T PRK10307 358 ----ESVEALVAAIAALARQALLRPKLGTVAREYAERTLDKENVLRQFIADIRGL 408 (412)
T ss_pred ----CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 37899999999999887 456666666666666777888888777653
No 55
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=98.96 E-value=9.6e-08 Score=87.92 Aligned_cols=93 Identities=18% Similarity=0.255 Sum_probs=68.8
Q ss_pred cCCCCeEEeecchhh---hhccccccccccc----CChhhHHHHHHcCCCeeeccccCchhhHHHHHHhHhcceeEecCC
Q 036519 239 TTQKGLVVNWCPQLG---VLAHEATGCFLTH----CGWNSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVWKMGLKVPAD 311 (365)
Q Consensus 239 ~~~~~~~~~~~p~~~---~L~~~~~~~~I~h----gG~gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~~~~~ 311 (365)
..+++.+.+++++.+ ++..+|+ +|.. |..+++.||+++|+|+|+... ...+..+++. +.|..++..
T Consensus 257 ~~~~v~~~g~~~~~~~~~~~~~ad~--~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~----~~~~~~i~~~-~~g~~~~~~ 329 (374)
T cd03817 257 LADRVIFTGFVPREELPDYYKAADL--FVFASTTETQGLVLLEAMAAGLPVVAVDA----PGLPDLVADG-ENGFLFPPG 329 (374)
T ss_pred CCCcEEEeccCChHHHHHHHHHcCE--EEecccccCcChHHHHHHHcCCcEEEeCC----CChhhheecC-ceeEEeCCC
Confidence 346788889998764 7889999 6643 335789999999999998653 4466777777 888888854
Q ss_pred CCCcccHHHHHHHHHHHhcCHH----HHHHHHHHHHc
Q 036519 312 EKGIVRREAIAHCIGEILEGDK----WRNFAKEAVAK 344 (365)
Q Consensus 312 ~~~~~~~~~l~~~i~~ll~~~~----~~~~a~~~~~~ 344 (365)
+ . ++.+++.++++|++ +.+++++..++
T Consensus 330 ---~--~-~~~~~i~~l~~~~~~~~~~~~~~~~~~~~ 360 (374)
T cd03817 330 ---D--E-ALAEALLRLLQDPELRRRLSKNAEESAEK 360 (374)
T ss_pred ---C--H-HHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 2 3 99999999998875 44444444433
No 56
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=98.82 E-value=5.1e-07 Score=82.86 Aligned_cols=111 Identities=20% Similarity=0.179 Sum_probs=80.3
Q ss_pred cCCCCeEEeecchh---hhhcccccccccc----cCChhhHHHHHHcCCCeeeccccCchhhHHHHHHhHhcceeEecCC
Q 036519 239 TTQKGLVVNWCPQL---GVLAHEATGCFLT----HCGWNSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVWKMGLKVPAD 311 (365)
Q Consensus 239 ~~~~~~~~~~~p~~---~~L~~~~~~~~I~----hgG~gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~~~~~ 311 (365)
..+++.+.+++++. .++..||+ +|. -|..+++.||+++|+|+|+-+. ......+++. +.|...+.
T Consensus 257 ~~~~v~~~g~~~~~~~~~~~~~ad~--~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~----~~~~~~~~~~-~~g~~~~~- 328 (377)
T cd03798 257 LEDRVTFLGAVPHEEVPAYYAAADV--FVLPSLREGFGLVLLEAMACGLPVVATDV----GGIPEIITDG-ENGLLVPP- 328 (377)
T ss_pred CcceEEEeCCCCHHHHHHHHHhcCe--eecchhhccCChHHHHHHhcCCCEEEecC----CChHHHhcCC-cceeEECC-
Confidence 34678888999865 47888998 652 3566889999999999987654 3455667777 77888874
Q ss_pred CCCcccHHHHHHHHHHHhcCHH--HHHHHHHHHHcCCCcHHHHHHHHHHHHh
Q 036519 312 EKGIVRREAIAHCIGEILEGDK--WRNFAKEAVAKGGSSDKNIDDFVANLIS 361 (365)
Q Consensus 312 ~~~~~~~~~l~~~i~~ll~~~~--~~~~a~~~~~~~g~s~~~~~~~~~~i~~ 361 (365)
-+.+++.+++.++++++. +.+++++...+.-+.+...+++.+.+++
T Consensus 329 ----~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 376 (377)
T cd03798 329 ----GDPEALAEAILRLLADPWLRLGRAARRRVAERFSWENVAERLLELYRE 376 (377)
T ss_pred ----CCHHHHHHHHHHHhcCcHHHHhHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 479999999999999876 3344444444444555666777776654
No 57
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=98.82 E-value=1.8e-06 Score=81.51 Aligned_cols=123 Identities=14% Similarity=-0.090 Sum_probs=73.9
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCccccccccCCCCCCCCeeEEEcCCCCCCCCCCCcCCHHHHHH
Q 036519 13 KLAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLHRDPSSSISIPLETISDGYDEGRSAQAETDQAYVD 92 (365)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~~~~~~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~ 92 (365)
+..||.+++....|+-..+..+|++|+++||+|++++.......-+ .....++.++.++..-.. ......+..+..
T Consensus 2 ~~~~~~~~~~~~~~~~~R~~~~a~~L~~~G~~V~ii~~~~~~~~~~--~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~ 77 (415)
T cd03816 2 KRKRVCVLVLGDIGRSPRMQYHALSLAKHGWKVDLVGYLETPPHDE--ILSNPNITIHPLPPPPQR--LNKLPFLLFAPL 77 (415)
T ss_pred CccEEEEEEecccCCCHHHHHHHHHHHhcCceEEEEEecCCCCCHH--HhcCCCEEEEECCCCccc--cccchHHHHHHH
Confidence 3467888888999999999999999999999999998653221111 011267888887521100 011111112222
Q ss_pred HHHHHhHHHHHHHHHhcCCCcEEEEcC-CC---c-cHHHHHHHhCCceEEEec
Q 036519 93 RFWQIGVQTLTELVERMNDVDCIVYDS-FL---P-WALDVAKKFGLTGAAFLT 140 (365)
Q Consensus 93 ~~~~~~~~~l~~ll~~~~~pD~vv~D~-~~---~-~a~~~A~~~giP~v~~~~ 140 (365)
.........+..++... +||+|++.. .. . .+..+++..|+|+|..+.
T Consensus 78 ~~~~~~~~~~~~l~~~~-~~Dvi~~~~~~~~~~~~~a~~~~~~~~~~~V~~~h 129 (415)
T cd03816 78 KVLWQFFSLLWLLYKLR-PADYILIQNPPSIPTLLIAWLYCLLRRTKLIIDWH 129 (415)
T ss_pred HHHHHHHHHHHHHHhcC-CCCEEEEeCCCCchHHHHHHHHHHHhCCeEEEEcC
Confidence 22223333444455555 899999743 21 1 245567778999987544
No 58
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=98.81 E-value=1.6e-07 Score=86.57 Aligned_cols=111 Identities=16% Similarity=0.071 Sum_probs=79.8
Q ss_pred cCCCCeEEeecc-hh---hhhccccccccccc----CChhhHHHHHHcCCCeeeccccCchhhHHHHHHhHhcceeEecC
Q 036519 239 TTQKGLVVNWCP-QL---GVLAHEATGCFLTH----CGWNSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVWKMGLKVPA 310 (365)
Q Consensus 239 ~~~~~~~~~~~p-~~---~~L~~~~~~~~I~h----gG~gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~~~~ 310 (365)
...++...+|++ +. .+++.+|+ +|.- |..+++.||+++|+|+|+... ......+.+. +.|..++
T Consensus 242 ~~~~v~~~g~~~~~~~~~~~~~~ad~--~l~ps~~e~~g~~~~Eam~~g~PvI~~~~----~~~~e~~~~~-~~g~~~~- 313 (365)
T cd03825 242 LPFPVHYLGSLNDDESLALIYSAADV--FVVPSLQENFPNTAIEALACGTPVVAFDV----GGIPDIVDHG-VTGYLAK- 313 (365)
T ss_pred CCCceEecCCcCCHHHHHHHHHhCCE--EEeccccccccHHHHHHHhcCCCEEEecC----CCChhheeCC-CceEEeC-
Confidence 456777788888 33 47999999 8774 335899999999999987654 2334455555 6777777
Q ss_pred CCCCcccHHHHHHHHHHHhcCHH----HHHHHHHHHHcCCCcHHHHHHHHHHHHh
Q 036519 311 DEKGIVRREAIAHCIGEILEGDK----WRNFAKEAVAKGGSSDKNIDDFVANLIS 361 (365)
Q Consensus 311 ~~~~~~~~~~l~~~i~~ll~~~~----~~~~a~~~~~~~g~s~~~~~~~~~~i~~ 361 (365)
..+.+++.+++.++++|++ +.+++++.+.+.-+.+...+++++..++
T Consensus 314 ----~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~y~~ 364 (365)
T cd03825 314 ----PGDPEDLAEGIEWLLADPDEREELGEAARELAENEFDSRVQAKRYLSLYEE 364 (365)
T ss_pred ----CCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 4478999999999998874 4455555555556667777777776653
No 59
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.81 E-value=6.9e-08 Score=89.40 Aligned_cols=102 Identities=23% Similarity=0.221 Sum_probs=70.3
Q ss_pred CCCeEEeecchh---hhhcccccccccccCChhhHHHHHHcCCCeeeccccCchhhHHHHHHhHhcceeEecCCCCCccc
Q 036519 241 QKGLVVNWCPQL---GVLAHEATGCFLTHCGWNSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVWKMGLKVPADEKGIVR 317 (365)
Q Consensus 241 ~~~~~~~~~p~~---~~L~~~~~~~~I~hgG~gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~ 317 (365)
+++.+.+..++. .++..||+ +|+.+| |.+.|+++.|+|+|+++...+ +..+.+. |+++.+. . +
T Consensus 258 ~~v~~~~~~~~~~~~~l~~~ad~--~v~~Sg-gi~~Ea~~~g~PvI~~~~~~~----~~~~~~~-g~~~~~~-----~-~ 323 (363)
T cd03786 258 PNVLLISPLGYLYFLLLLKNADL--VLTDSG-GIQEEASFLGVPVLNLRDRTE----RPETVES-GTNVLVG-----T-D 323 (363)
T ss_pred CCEEEECCcCHHHHHHHHHcCcE--EEEcCc-cHHhhhhhcCCCEEeeCCCCc----cchhhhe-eeEEecC-----C-C
Confidence 566666544433 46888999 999999 888899999999999874322 3345567 7765554 2 5
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 036519 318 REAIAHCIGEILEGDKWRNFAKEAVAKGGSSDKNIDDFVANL 359 (365)
Q Consensus 318 ~~~l~~~i~~ll~~~~~~~~a~~~~~~~g~s~~~~~~~~~~i 359 (365)
+++|.+++.++++|+..+++++ ....| ...+.+++++.|
T Consensus 324 ~~~i~~~i~~ll~~~~~~~~~~--~~~~~-~~~a~~~I~~~l 362 (363)
T cd03786 324 PEAILAAIEKLLSDEFAYSLMS--INPYG-DGNASERIVEIL 362 (363)
T ss_pred HHHHHHHHHHHhcCchhhhcCC--CCCCC-CCHHHHHHHHHh
Confidence 8999999999999876665554 22223 334556666654
No 60
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.80 E-value=1.3e-07 Score=85.85 Aligned_cols=97 Identities=15% Similarity=0.115 Sum_probs=69.1
Q ss_pred hhhhcccccccccccCChhhHHHHHHcCCCeeeccc--cCchhhHHHHHH---hHhcceeEecC---------C-CCCcc
Q 036519 252 LGVLAHEATGCFLTHCGWNSTIEALRLGVPMLAMPL--WTDQSTNSKYVM---DVWKMGLKVPA---------D-EKGIV 316 (365)
Q Consensus 252 ~~~L~~~~~~~~I~hgG~gs~~eal~~GvP~v~~P~--~~DQ~~nA~~v~---~~~G~G~~~~~---------~-~~~~~ 316 (365)
.+++..||+ +|+.+|..|+ |+...|+|+|+ ++ ..-|+.||+++. .. |+.-.+.. + -..+.
T Consensus 230 ~~~m~~aDl--al~~SGT~TL-E~al~g~P~Vv-~Yk~~~lty~iak~lv~~~~i-gL~Nii~~~~~~~~vvPEllQ~~~ 304 (347)
T PRK14089 230 HKALLEAEF--AFICSGTATL-EAALIGTPFVL-AYKAKAIDYFIAKMFVKLKHI-GLANIFFDFLGKEPLHPELLQEFV 304 (347)
T ss_pred HHHHHhhhH--HHhcCcHHHH-HHHHhCCCEEE-EEeCCHHHHHHHHHHHcCCee-ehHHHhcCCCcccccCchhhcccC
Confidence 468999999 9999999999 99999999988 55 346888999999 55 66544411 0 01278
Q ss_pred cHHHHHHHHHHHhcCHHHHHHHHHHHHcC--CCcHHHHHH
Q 036519 317 RREAIAHCIGEILEGDKWRNFAKEAVAKG--GSSDKNIDD 354 (365)
Q Consensus 317 ~~~~l~~~i~~ll~~~~~~~~a~~~~~~~--g~s~~~~~~ 354 (365)
|++.|.+++.+ ...+++++...++.+.. +++.+..+.
T Consensus 305 t~~~la~~i~~-~~~~~~~~~~~~l~~~l~~~a~~~~A~~ 343 (347)
T PRK14089 305 TVENLLKAYKE-MDREKFFKKSKELREYLKHGSAKNVAKI 343 (347)
T ss_pred CHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 99999999988 33345666666655543 344444443
No 61
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=98.80 E-value=3.9e-07 Score=82.78 Aligned_cols=87 Identities=18% Similarity=0.250 Sum_probs=61.4
Q ss_pred CCCeEEeecc-hhhhhcccccccccccC----ChhhHHHHHHcCCCeeeccccCchhhHHHHHHhHhc-ceeEecCCCCC
Q 036519 241 QKGLVVNWCP-QLGVLAHEATGCFLTHC----GWNSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVWK-MGLKVPADEKG 314 (365)
Q Consensus 241 ~~~~~~~~~p-~~~~L~~~~~~~~I~hg----G~gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~~G-~G~~~~~~~~~ 314 (365)
.++.+.++.+ -..++..+++ +|.-. ..+++.||+++|+|+|+.+..+.+ ..+... | .|...+
T Consensus 235 ~~v~~~g~~~~~~~~~~~ad~--~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~----~~~~~~-~~~g~~~~----- 302 (348)
T cd03820 235 DRVILLGFTKNIEEYYAKASI--FVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGP----SEIIED-GVNGLLVP----- 302 (348)
T ss_pred CeEEEcCCcchHHHHHHhCCE--EEeCccccccCHHHHHHHHcCCCEEEecCCCch----Hhhhcc-CcceEEeC-----
Confidence 4555666532 3358999998 77654 257899999999999987654333 233344 4 788877
Q ss_pred cccHHHHHHHHHHHhcCHHHHHHHH
Q 036519 315 IVRREAIAHCIGEILEGDKWRNFAK 339 (365)
Q Consensus 315 ~~~~~~l~~~i~~ll~~~~~~~~a~ 339 (365)
..+.+++.+++.++++|++.++.+.
T Consensus 303 ~~~~~~~~~~i~~ll~~~~~~~~~~ 327 (348)
T cd03820 303 NGDVEALAEALLRLMEDEELRKRMG 327 (348)
T ss_pred CCCHHHHHHHHHHHHcCHHHHHHHH
Confidence 3478999999999999986554443
No 62
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=98.78 E-value=1.8e-06 Score=80.73 Aligned_cols=83 Identities=14% Similarity=0.107 Sum_probs=61.8
Q ss_pred cCCCCeEEeecchh---hhhccccccccccc----CChhhHHHHHHcCCCeeeccccCchhhHHHHHHhHhcceeEecCC
Q 036519 239 TTQKGLVVNWCPQL---GVLAHEATGCFLTH----CGWNSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVWKMGLKVPAD 311 (365)
Q Consensus 239 ~~~~~~~~~~~p~~---~~L~~~~~~~~I~h----gG~gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~~~~~ 311 (365)
..+++.+.++++.. .+|..+|+ ++.. |-..++.||+++|+|+|+.-. ......+.+. +.|...+
T Consensus 278 l~~~V~f~g~~~~~~~~~~l~~ad~--~l~~s~~E~~g~~~lEAma~G~PvI~s~~----~~~~e~i~~~-~~g~~~~-- 348 (392)
T cd03805 278 LEDQVIFLPSISDSQKELLLSSARA--LLYTPSNEHFGIVPLEAMYAGKPVIACNS----GGPLETVVDG-ETGFLCE-- 348 (392)
T ss_pred CCceEEEeCCCChHHHHHHHhhCeE--EEECCCcCCCCchHHHHHHcCCCEEEECC----CCcHHHhccC-CceEEeC--
Confidence 34688899999876 47889998 6642 223678999999999998744 3344556666 6787665
Q ss_pred CCCcccHHHHHHHHHHHhcCHHH
Q 036519 312 EKGIVRREAIAHCIGEILEGDKW 334 (365)
Q Consensus 312 ~~~~~~~~~l~~~i~~ll~~~~~ 334 (365)
. +++++.++|.++++|++.
T Consensus 349 ---~-~~~~~a~~i~~l~~~~~~ 367 (392)
T cd03805 349 ---P-TPEEFAEAMLKLANDPDL 367 (392)
T ss_pred ---C-CHHHHHHHHHHHHhChHH
Confidence 3 689999999999988743
No 63
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.77 E-value=5.7e-07 Score=81.07 Aligned_cols=305 Identities=14% Similarity=0.106 Sum_probs=153.6
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCccc--cccccCCCCCCCCeeEEEcCCCCCCCCCCCcCCHHHHHH
Q 036519 15 AHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFI--SKSLHRDPSSSISIPLETISDGYDEGRSAQAETDQAYVD 92 (365)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~--~~~v~~~~~~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~ 92 (365)
|||++--.- .-|+.=+-.+.++|.++||+|.+.+-+.. .+.+.. .|+++..+.. .. .+....+.
T Consensus 1 MkIwiDi~~-p~hvhfFk~~I~eL~~~GheV~it~R~~~~~~~LL~~-----yg~~y~~iG~-------~g-~~~~~Kl~ 66 (335)
T PF04007_consen 1 MKIWIDITH-PAHVHFFKNIIRELEKRGHEVLITARDKDETEELLDL-----YGIDYIVIGK-------HG-DSLYGKLL 66 (335)
T ss_pred CeEEEECCC-chHHHHHHHHHHHHHhCCCEEEEEEeccchHHHHHHH-----cCCCeEEEcC-------CC-CCHHHHHH
Confidence 667665443 33899999999999999999998876533 344554 6888887752 11 23333333
Q ss_pred HHHHHhHHHHHHHHHhcCCCcEEEEcCCCccHHHHHHHhCCceEEEecccHHHHH--HHHHhhcccccCC----------
Q 036519 93 RFWQIGVQTLTELVERMNDVDCIVYDSFLPWALDVAKKFGLTGAAFLTQSCTVAS--IYHYVNKGLIKLP---------- 160 (365)
Q Consensus 93 ~~~~~~~~~l~~ll~~~~~pD~vv~D~~~~~a~~~A~~~giP~v~~~~~~~~~~~--~~~~~~~~~~~~~---------- 160 (365)
....+.. .+-.++.+. +||++|+- ....+..+|.-+|+|+|.|.=....... +..+ +...+-.+
T Consensus 67 ~~~~R~~-~l~~~~~~~-~pDv~is~-~s~~a~~va~~lgiP~I~f~D~e~a~~~~~Lt~P-la~~i~~P~~~~~~~~~~ 142 (335)
T PF04007_consen 67 ESIERQY-KLLKLIKKF-KPDVAISF-GSPEAARVAFGLGIPSIVFNDTEHAIAQNRLTLP-LADVIITPEAIPKEFLKR 142 (335)
T ss_pred HHHHHHH-HHHHHHHhh-CCCEEEec-CcHHHHHHHHHhCCCeEEEecCchhhccceeehh-cCCeeECCcccCHHHHHh
Confidence 3333322 355666666 99999964 4456888999999999987654322111 0111 11100000
Q ss_pred -CCCCccc-cCCCCCCCCC----CCCCccCCC--CCchhHHHHHHHhh-hhccccch---hHhHhhHhhhhhhhhCchhh
Q 036519 161 -LTGDQVF-LPGLPPLDPQ----DTPSFINDP--ASYPAFFDMILTRQ-FSNIDKAD---WILCNTFYELEKEVIKESEQ 228 (365)
Q Consensus 161 -~~~~~~~-~pg~p~~~~~----~lp~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~l~~~~~~~~~~ 228 (365)
+..+.+. .+|+.++-+- .-+.++..- +..+.+...+ ... ..-..... ..+++.+.+....++.-...
T Consensus 143 ~G~~~~i~~y~G~~E~ayl~~F~Pd~~vl~~lg~~~~~yIvvR~-~~~~A~y~~~~~~i~~~ii~~L~~~~~~vV~ipr~ 221 (335)
T PF04007_consen 143 FGAKNQIRTYNGYKELAYLHPFKPDPEVLKELGLDDEPYIVVRP-EAWKASYDNGKKSILPEIIEELEKYGRNVVIIPRY 221 (335)
T ss_pred cCCcCCEEEECCeeeEEeecCCCCChhHHHHcCCCCCCEEEEEe-ccccCeeecCccchHHHHHHHHHhhCceEEEecCC
Confidence 0011232 5555422110 001111100 0111111111 110 00111111 22333344333222222222
Q ss_pred CCCCcccccccCCCCeEE-eecchhhhhcccccccccccCChhhHHHHHHcCCCeeeccccCchhhHHHHHHhHhcceeE
Q 036519 229 SKLPENFSDETTQKGLVV-NWCPQLGVLAHEATGCFLTHCGWNSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVWKMGLK 307 (365)
Q Consensus 229 ~~~p~~~~~~~~~~~~~~-~~~p~~~~L~~~~~~~~I~hgG~gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~ 307 (365)
+..++.+. .. ++.+. .-++..++|.+|++ +|+-|| +...||...|+|.|.+ +.++-...-+.+.+. |. .
T Consensus 222 ~~~~~~~~-~~--~~~i~~~~vd~~~Ll~~a~l--~Ig~gg-TMa~EAA~LGtPaIs~-~~g~~~~vd~~L~~~-Gl--l 291 (335)
T PF04007_consen 222 EDQRELFE-KY--GVIIPPEPVDGLDLLYYADL--VIGGGG-TMAREAALLGTPAISC-FPGKLLAVDKYLIEK-GL--L 291 (335)
T ss_pred cchhhHHh-cc--CccccCCCCCHHHHHHhcCE--EEeCCc-HHHHHHHHhCCCEEEe-cCCcchhHHHHHHHC-CC--e
Confidence 22222111 11 12222 34555689999999 999877 7889999999999975 333433444566677 65 3
Q ss_pred ecCCCCCcccHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh
Q 036519 308 VPADEKGIVRREAIAHCIGEILEGDKWRNFAKEAVAKGGSSDKNIDDFVANLIS 361 (365)
Q Consensus 308 ~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~~~~~~g~s~~~~~~~~~~i~~ 361 (365)
.. .-+++++.+.+.+.+ ..+.+.+.... .+-.+.+++.|++
T Consensus 292 ~~-----~~~~~ei~~~v~~~~---~~~~~~~~~~~-----~d~~~~i~~~i~~ 332 (335)
T PF04007_consen 292 YH-----STDPDEIVEYVRKNL---GKRKKIREKKS-----EDPTDLIIEEIEE 332 (335)
T ss_pred Ee-----cCCHHHHHHHHHHhh---hcccchhhhhc-----cCHHHHHHHHHHH
Confidence 33 246777777665544 23333332111 3455555666554
No 64
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=98.75 E-value=4e-07 Score=86.22 Aligned_cols=106 Identities=12% Similarity=0.153 Sum_probs=72.3
Q ss_pred CCeEEeecch-hhhhccccccccccc-----CChhhHHHHHHcCCCeeeccccCchhhHHHHHHhHhcceeEecCCCCCc
Q 036519 242 KGLVVNWCPQ-LGVLAHEATGCFLTH-----CGWNSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVWKMGLKVPADEKGI 315 (365)
Q Consensus 242 ~~~~~~~~p~-~~~L~~~~~~~~I~h-----gG~gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~ 315 (365)
++++.+.... ..+++.+|+ ++.. ||..++.||+++|+|+|+-|...++......+.+. |+++...
T Consensus 303 ~v~l~~~~~el~~~y~~aDi--~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~~-g~~~~~~------ 373 (425)
T PRK05749 303 DVLLGDTMGELGLLYAIADI--AFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQA-GAAIQVE------ 373 (425)
T ss_pred cEEEEecHHHHHHHHHhCCE--EEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHHC-CCeEEEC------
Confidence 3444444333 358899997 5432 34446899999999999999888888888887777 7766533
Q ss_pred ccHHHHHHHHHHHhcCHH----HHHHHHHHHHcC-CCcHHHHHHHHH
Q 036519 316 VRREAIAHCIGEILEGDK----WRNFAKEAVAKG-GSSDKNIDDFVA 357 (365)
Q Consensus 316 ~~~~~l~~~i~~ll~~~~----~~~~a~~~~~~~-g~s~~~~~~~~~ 357 (365)
++++|.+++.++++|++ +.+++++.+.+. |..++.++.+.+
T Consensus 374 -d~~~La~~l~~ll~~~~~~~~m~~~a~~~~~~~~~~~~~~~~~l~~ 419 (425)
T PRK05749 374 -DAEDLAKAVTYLLTDPDARQAYGEAGVAFLKQNQGALQRTLQLLEP 419 (425)
T ss_pred -CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 58999999999999874 455555555443 333444444433
No 65
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=98.75 E-value=1.4e-07 Score=87.47 Aligned_cols=106 Identities=19% Similarity=0.199 Sum_probs=73.3
Q ss_pred CCCeEEeecch---hhhhcccccccccccCChhhHHHHHHcCCCeeeccccCchhhHHHHHHhHhcceeEecCCCCCccc
Q 036519 241 QKGLVVNWCPQ---LGVLAHEATGCFLTHCGWNSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVWKMGLKVPADEKGIVR 317 (365)
Q Consensus 241 ~~~~~~~~~p~---~~~L~~~~~~~~I~hgG~gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~ 317 (365)
+++++.+.+++ ..+++.+++ +|+-.|.. +.||+++|+|+|+++..++++. +... |.++.+. .+
T Consensus 255 ~~v~~~~~~~~~~~~~~l~~ad~--vv~~Sg~~-~~EA~a~g~PvI~~~~~~~~~e----~~~~-g~~~lv~------~d 320 (365)
T TIGR00236 255 KRVHLIEPLEYLDFLNLAANSHL--ILTDSGGV-QEEAPSLGKPVLVLRDTTERPE----TVEA-GTNKLVG------TD 320 (365)
T ss_pred CCEEEECCCChHHHHHHHHhCCE--EEECChhH-HHHHHHcCCCEEECCCCCCChH----HHhc-CceEEeC------CC
Confidence 56777765544 457888998 99987654 7999999999999876555542 2346 7776553 36
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh
Q 036519 318 REAIAHCIGEILEGDKWRNFAKEAVAKGGSSDKNIDDFVANLIS 361 (365)
Q Consensus 318 ~~~l~~~i~~ll~~~~~~~~a~~~~~~~g~s~~~~~~~~~~i~~ 361 (365)
+++|.+++.++++|++.++++.+....-|. ..+.+++++.|.+
T Consensus 321 ~~~i~~ai~~ll~~~~~~~~~~~~~~~~g~-~~a~~ri~~~l~~ 363 (365)
T TIGR00236 321 KENITKAAKRLLTDPDEYKKMSNASNPYGD-GEASERIVEELLN 363 (365)
T ss_pred HHHHHHHHHHHHhChHHHHHhhhcCCCCcC-chHHHHHHHHHHh
Confidence 899999999999998877776554333332 3345555555543
No 66
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=98.75 E-value=9.5e-07 Score=82.88 Aligned_cols=103 Identities=16% Similarity=0.120 Sum_probs=71.3
Q ss_pred CCCCeEEeecchhh---hhcccccccccc---cCC-hhhHHHHHHcCCCeeeccccCchhhHHHHHHhHhcceeEecCCC
Q 036519 240 TQKGLVVNWCPQLG---VLAHEATGCFLT---HCG-WNSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVWKMGLKVPADE 312 (365)
Q Consensus 240 ~~~~~~~~~~p~~~---~L~~~~~~~~I~---hgG-~gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~ 312 (365)
.+++.+.+++|+.. +|..+|+ +|. +.| ..++.||+++|+|+|+.. .......+++. ..|..++.
T Consensus 280 ~~~V~f~G~v~~~~~~~~l~~adv--~v~~s~~e~~~~~llEAmA~G~PVIas~----~~g~~e~i~~~-~~G~lv~~-- 350 (396)
T cd03818 280 LSRVHFLGRVPYDQYLALLQVSDV--HVYLTYPFVLSWSLLEAMACGCLVVGSD----TAPVREVITDG-ENGLLVDF-- 350 (396)
T ss_pred cceEEEeCCCCHHHHHHHHHhCcE--EEEcCcccccchHHHHHHHCCCCEEEcC----CCCchhhcccC-CceEEcCC--
Confidence 36788889998764 6788998 653 223 358999999999999864 34566667666 67887774
Q ss_pred CCcccHHHHHHHHHHHhcCHH----HHHHHHHHHHcCCCcHHHHHH
Q 036519 313 KGIVRREAIAHCIGEILEGDK----WRNFAKEAVAKGGSSDKNIDD 354 (365)
Q Consensus 313 ~~~~~~~~l~~~i~~ll~~~~----~~~~a~~~~~~~g~s~~~~~~ 354 (365)
-+++++.++|.++++|++ +.+++++.+.+.-+-+..+++
T Consensus 351 ---~d~~~la~~i~~ll~~~~~~~~l~~~ar~~~~~~fs~~~~~~~ 393 (396)
T cd03818 351 ---FDPDALAAAVIELLDDPARRARLRRAARRTALRYDLLSVCLPR 393 (396)
T ss_pred ---CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 479999999999999874 444444444443333333333
No 67
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.72 E-value=1.8e-06 Score=79.36 Aligned_cols=90 Identities=22% Similarity=0.205 Sum_probs=64.6
Q ss_pred cCCCCeEEeecchh---hhhcccccccccc---cCC-hhhHHHHHHcCCCeeeccccCchhhHHHHHHh-HhcceeEecC
Q 036519 239 TTQKGLVVNWCPQL---GVLAHEATGCFLT---HCG-WNSTIEALRLGVPMLAMPLWTDQSTNSKYVMD-VWKMGLKVPA 310 (365)
Q Consensus 239 ~~~~~~~~~~~p~~---~~L~~~~~~~~I~---hgG-~gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~-~~G~G~~~~~ 310 (365)
...|+.+.+|+++. .++..||+.++-+ +.| ..++.||+++|+|+|+....+.. ..+.. . +.|...+.
T Consensus 242 ~~~~V~~~g~v~~~~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~----~~i~~~~-~~g~~~~~ 316 (357)
T cd03795 242 LLDRVRFLGRLDDEEKAALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGG----SYVNLHG-VTGLVVPP 316 (357)
T ss_pred CcceEEEcCCCCHHHHHHHHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCch----hHHhhCC-CceEEeCC
Confidence 34688999999975 4888899933323 234 35799999999999986554433 33443 6 78877773
Q ss_pred CCCCcccHHHHHHHHHHHhcCHHHHHHH
Q 036519 311 DEKGIVRREAIAHCIGEILEGDKWRNFA 338 (365)
Q Consensus 311 ~~~~~~~~~~l~~~i~~ll~~~~~~~~a 338 (365)
-+.+++.++|.++++|++.+++.
T Consensus 317 -----~d~~~~~~~i~~l~~~~~~~~~~ 339 (357)
T cd03795 317 -----GDPAALAEAIRRLLEDPELRERL 339 (357)
T ss_pred -----CCHHHHHHHHHHHHHCHHHHHHH
Confidence 47999999999999998544333
No 68
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.69 E-value=3.2e-06 Score=77.70 Aligned_cols=283 Identities=16% Similarity=0.108 Sum_probs=144.4
Q ss_pred CCCChHHHHHHHHHHHhCCCeEEEEeCccc-cccccCCCCCCCCeeEEEcCCCCCCCCCCCcCCHHHHHHHHHHHhHHHH
Q 036519 24 AQGHMNPLLQFSKRLEHNGIKVTLVTTYFI-SKSLHRDPSSSISIPLETISDGYDEGRSAQAETDQAYVDRFWQIGVQTL 102 (365)
Q Consensus 24 ~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~-~~~v~~~~~~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 102 (365)
..|--.-+..+|++|.++||+|++++.... .+.++. .+++++.++. .. ......+.. ...+
T Consensus 9 ~gG~e~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~-----~~~~~~~~~~--~~------~~~~~~~~~-----~~~l 70 (355)
T cd03819 9 SGGVERGTLELARALVERGHRSLVASAGGRLVAELEA-----EGSRHIKLPF--IS------KNPLRILLN-----VARL 70 (355)
T ss_pred cCcHHHHHHHHHHHHHHcCCEEEEEcCCCchHHHHHh-----cCCeEEEccc--cc------cchhhhHHH-----HHHH
Confidence 356667788999999999999999886432 233333 4666666541 11 011111111 1234
Q ss_pred HHHHHhcCCCcEEEEcCCC--ccHHHHHHHhCCceEEEecccHHHHHHHHHhh---ccccc------------CCCCCCc
Q 036519 103 TELVERMNDVDCIVYDSFL--PWALDVAKKFGLTGAAFLTQSCTVASIYHYVN---KGLIK------------LPLTGDQ 165 (365)
Q Consensus 103 ~~ll~~~~~pD~vv~D~~~--~~a~~~A~~~giP~v~~~~~~~~~~~~~~~~~---~~~~~------------~~~~~~~ 165 (365)
..++++. +||+|++.... +.+..+++..++|++............+.... +..+. ..-....
T Consensus 71 ~~~~~~~-~~dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~vi~~s~~~~~~~~~~~~~~~~k 149 (355)
T cd03819 71 RRLIREE-KVDIVHARSRAPAWSAYLAARRTRPPFVTTVHGFYSVNFRYNAIMARGDRVIAVSNFIADHIRENYGVDPDR 149 (355)
T ss_pred HHHHHHc-CCCEEEECCCchhHHHHHHHHhcCCCEEEEeCCchhhHHHHHHHHHhcCEEEEeCHHHHHHHHHhcCCChhh
Confidence 5566666 99999987432 33566778889999976654433221111110 00000 0000011
Q ss_pred c-ccC-CCCCCCCCCCCCccCC------------CCCchhHHHHHHHhhhhccccchhHhHhhHhhhhhh---h-hCchh
Q 036519 166 V-FLP-GLPPLDPQDTPSFIND------------PASYPAFFDMILTRQFSNIDKADWILCNTFYELEKE---V-IKESE 227 (365)
Q Consensus 166 ~-~~p-g~p~~~~~~lp~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~-~~~~~ 227 (365)
+ .+| |++. ...+..... ......+..+. ++.. -.+....++.++..+... + +.-.+
T Consensus 150 ~~~i~ngi~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-Gr~~--~~Kg~~~li~~~~~l~~~~~~~~l~ivG 223 (355)
T cd03819 150 IRVIPRGVDL---DRFDPGAVPPERILALAREWPLPKGKPVILLP-GRLT--RWKGQEVFIEALARLKKDDPDVHLLIVG 223 (355)
T ss_pred EEEecCCccc---cccCccccchHHHHHHHHHcCCCCCceEEEEe-eccc--cccCHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 1 111 2110 001000000 00011111111 1111 112234566666666432 1 11112
Q ss_pred hCCCCcccc-------c--ccCCCCeEEeecch-hhhhcccccccccccC----C-hhhHHHHHHcCCCeeeccccCchh
Q 036519 228 QSKLPENFS-------D--ETTQKGLVVNWCPQ-LGVLAHEATGCFLTHC----G-WNSTIEALRLGVPMLAMPLWTDQS 292 (365)
Q Consensus 228 ~~~~p~~~~-------~--~~~~~~~~~~~~p~-~~~L~~~~~~~~I~hg----G-~gs~~eal~~GvP~v~~P~~~DQ~ 292 (365)
.+...+.+. + ...+++.+.+|.+. ..+|..+|+ +|+-. | .+++.||+++|+|+|+... .
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~l~~ad~--~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~----~ 297 (355)
T cd03819 224 DAQGRRFYYAELLELIKRLGLQDRVTFVGHCSDMPAAYALADI--VVSASTEPEAFGRTAVEAQAMGRPVIASDH----G 297 (355)
T ss_pred CCcccchHHHHHHHHHHHcCCcceEEEcCCcccHHHHHHhCCE--EEecCCCCCCCchHHHHHHhcCCCEEEcCC----C
Confidence 111111110 1 23467788887543 348999999 55422 3 4699999999999987643 3
Q ss_pred hHHHHHHhHhcceeEecCCCCCcccHHHHHHHHHHHhc-CHH----HHHHHHHHHH
Q 036519 293 TNSKYVMDVWKMGLKVPADEKGIVRREAIAHCIGEILE-GDK----WRNFAKEAVA 343 (365)
Q Consensus 293 ~nA~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~-~~~----~~~~a~~~~~ 343 (365)
.+...+.+. +.|..++. -+.+++.++|..++. |++ +++++++.+.
T Consensus 298 ~~~e~i~~~-~~g~~~~~-----~~~~~l~~~i~~~~~~~~~~~~~~~~~a~~~~~ 347 (355)
T cd03819 298 GARETVRPG-ETGLLVPP-----GDAEALAQALDQILSLLPEGRAKMFAKARMCVE 347 (355)
T ss_pred CcHHHHhCC-CceEEeCC-----CCHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 455677777 78888874 489999999976654 553 4444444433
No 69
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=98.66 E-value=5.7e-06 Score=77.81 Aligned_cols=109 Identities=18% Similarity=0.123 Sum_probs=76.8
Q ss_pred CCCCeEEeecchh---hhhcccccccccc---c-CChhhHHHHHHcCCCeeeccccCchhhHHHHHHhHhcceeEecCCC
Q 036519 240 TQKGLVVNWCPQL---GVLAHEATGCFLT---H-CGWNSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVWKMGLKVPADE 312 (365)
Q Consensus 240 ~~~~~~~~~~p~~---~~L~~~~~~~~I~---h-gG~gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~ 312 (365)
.+++.+.+++++. .+|..+|+ +|. + |...++.||+++|+|+|+... ......+++. +.|..++.
T Consensus 282 ~~~v~~~g~~~~~~~~~~l~~ad~--~v~ps~~E~~g~~~lEAma~G~Pvi~~~~----~~~~e~i~~~-~~g~~~~~-- 352 (405)
T TIGR03449 282 ADRVRFLPPRPPEELVHVYRAADV--VAVPSYNESFGLVAMEAQACGTPVVAARV----GGLPVAVADG-ETGLLVDG-- 352 (405)
T ss_pred CceEEECCCCCHHHHHHHHHhCCE--EEECCCCCCcChHHHHHHHcCCCEEEecC----CCcHhhhccC-CceEECCC--
Confidence 3678888888765 47999998 663 2 334689999999999998654 3345567777 78887773
Q ss_pred CCcccHHHHHHHHHHHhcCHHH----HHHHHHHHHcCCCcHHHHHHHHHHHHh
Q 036519 313 KGIVRREAIAHCIGEILEGDKW----RNFAKEAVAKGGSSDKNIDDFVANLIS 361 (365)
Q Consensus 313 ~~~~~~~~l~~~i~~ll~~~~~----~~~a~~~~~~~g~s~~~~~~~~~~i~~ 361 (365)
-+.+++.+++.++++|++. ++++++..+ .-+-+..++++++...+
T Consensus 353 ---~d~~~la~~i~~~l~~~~~~~~~~~~~~~~~~-~fsw~~~~~~~~~~y~~ 401 (405)
T TIGR03449 353 ---HDPADWADALARLLDDPRTRIRMGAAAVEHAA-GFSWAATADGLLSSYRD 401 (405)
T ss_pred ---CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHH
Confidence 4789999999999988744 444444443 34455566666665543
No 70
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=98.57 E-value=2.1e-05 Score=73.91 Aligned_cols=108 Identities=15% Similarity=0.023 Sum_probs=72.3
Q ss_pred CCCCeEEeecchh---hhhccccccccccc---CCh-hhHHHHHHcCCCeeeccccCchhhHHHHHHhHhcceeEecCCC
Q 036519 240 TQKGLVVNWCPQL---GVLAHEATGCFLTH---CGW-NSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVWKMGLKVPADE 312 (365)
Q Consensus 240 ~~~~~~~~~~p~~---~~L~~~~~~~~I~h---gG~-gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~ 312 (365)
.+++.+.+|+++. .+|+.+|+ +|.- -|. .++.||+++|+|+|+.+..+ ....+++ |.+....
T Consensus 249 ~~~v~~~G~~~~~~~~~~l~~ad~--~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg----~~e~i~~--~~~~~~~--- 317 (398)
T cd03796 249 QDRVELLGAVPHERVRDVLVQGHI--FLNTSLTEAFCIAIVEAASCGLLVVSTRVGG----IPEVLPP--DMILLAE--- 317 (398)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEeCChhhccCHHHHHHHHcCCCEEECCCCC----chhheeC--CceeecC---
Confidence 4567888998754 48889999 6642 244 49999999999998876642 2334433 3332222
Q ss_pred CCcccHHHHHHHHHHHhcCH----HHHHHHHHHHHcCCCcHHHHHHHHHHHHh
Q 036519 313 KGIVRREAIAHCIGEILEGD----KWRNFAKEAVAKGGSSDKNIDDFVANLIS 361 (365)
Q Consensus 313 ~~~~~~~~l~~~i~~ll~~~----~~~~~a~~~~~~~g~s~~~~~~~~~~i~~ 361 (365)
.+.+++.+++.+++++. .+.+++++..++.=+-.+..+++++..++
T Consensus 318 ---~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~y~~ 367 (398)
T cd03796 318 ---PDVESIVRKLEEAISILRTGKHDPWSFHNRVKKMYSWEDVAKRTEKVYDR 367 (398)
T ss_pred ---CCHHHHHHHHHHHHhChhhhhhHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Confidence 26899999999999764 23455555556666666677777666554
No 71
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.55 E-value=4.6e-06 Score=76.04 Aligned_cols=299 Identities=15% Similarity=0.078 Sum_probs=150.9
Q ss_pred cEEEEEcCC-------CC-CChHHHHHHHHHHHhCCCeEEEEeCccccccccCCCCCCCCeeEEEcC-CCCCCCCCCCcC
Q 036519 15 AHCLVLSYP-------AQ-GHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLHRDPSSSISIPLETIS-DGYDEGRSAQAE 85 (365)
Q Consensus 15 ~~il~~~~~-------~~-GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~~~~~~~~gi~~~~l~-~~~~~~~~~~~~ 85 (365)
|||++++.. .. |--.-...|++.|.++||+|++++........ ....+. ..... . .
T Consensus 1 MkI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~----------~~~~~~~~~~~~---~-~- 65 (335)
T cd03802 1 MRIALVAPPREPVPPPAYGGTERVVAALTEGLVARGHEVTLFASGDSKTAA----------PLVPVVPEPLRL---D-A- 65 (335)
T ss_pred CeEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhcCceEEEEecCCCCccc----------ceeeccCCCccc---c-c-
Confidence 789888753 33 44466899999999999999999875432111 111111 00111 0 0
Q ss_pred CHHHHHHHHHHHhHHHHHHHHHhcCCCcEEEEcCCCccHHHHHHHhCCceEEEecccHHHHHHH--HHhhc-ccc-cCC-
Q 036519 86 TDQAYVDRFWQIGVQTLTELVERMNDVDCIVYDSFLPWALDVAKKFGLTGAAFLTQSCTVASIY--HYVNK-GLI-KLP- 160 (365)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~ll~~~~~pD~vv~D~~~~~a~~~A~~~giP~v~~~~~~~~~~~~~--~~~~~-~~~-~~~- 160 (365)
... ..........+..++++. +||+|.+-....... +++..++|++............. ..... ..+ ..+
T Consensus 66 --~~~-~~~~~~~~~~~~~~~~~~-~~Divh~~~~~~~~~-~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~s~ 140 (335)
T cd03802 66 --PGR-DRAEAEALALAERALAAG-DFDIVHNHSLHLPLP-FARPLPVPVVTTLHGPPDPELLKLYYAARPDVPFVSISD 140 (335)
T ss_pred --chh-hHhhHHHHHHHHHHHhcC-CCCEEEecCcccchh-hhcccCCCEEEEecCCCCcccchHHHhhCcCCeEEEecH
Confidence 111 111111222355666666 999998765444333 78899999987554432211100 00000 000 000
Q ss_pred -------CCCCccccC-CCCCCCCCCCCCccCCCCCchhHHHHHHHhhhhccccchhHhHhhHhhhhhhhhCchhhCCCC
Q 036519 161 -------LTGDQVFLP-GLPPLDPQDTPSFINDPASYPAFFDMILTRQFSNIDKADWILCNTFYELEKEVIKESEQSKLP 232 (365)
Q Consensus 161 -------~~~~~~~~p-g~p~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p 232 (365)
.......+| |. +.+.+-.. ........+. +... . .+....++..+.+.+.+++.. +.+...
T Consensus 141 ~~~~~~~~~~~~~vi~ngv------d~~~~~~~-~~~~~~i~~~-Gr~~-~-~Kg~~~li~~~~~~~~~l~i~-G~~~~~ 209 (335)
T cd03802 141 AQRRPWPPLPWVATVHNGI------DLDDYPFR-GPKGDYLLFL-GRIS-P-EKGPHLAIRAARRAGIPLKLA-GPVSDP 209 (335)
T ss_pred HHHhhcccccccEEecCCc------ChhhCCCC-CCCCCEEEEE-Eeec-c-ccCHHHHHHHHHhcCCeEEEE-eCCCCH
Confidence 000000111 11 11111100 1111111122 2221 1 122234555555544333221 111111
Q ss_pred cc---c-ccc--cCCCCeEEeecchh---hhhcccccccccc--cCC-hhhHHHHHHcCCCeeeccccCchhhHHHHHHh
Q 036519 233 EN---F-SDE--TTQKGLVVNWCPQL---GVLAHEATGCFLT--HCG-WNSTIEALRLGVPMLAMPLWTDQSTNSKYVMD 300 (365)
Q Consensus 233 ~~---~-~~~--~~~~~~~~~~~p~~---~~L~~~~~~~~I~--hgG-~gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~ 300 (365)
+. . ... ..+++...+++++. .+++.+|+-++-+ +-| ..++.||+++|+|+|+-.. ..+...+++
T Consensus 210 ~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~----~~~~e~i~~ 285 (335)
T cd03802 210 DYFYREIAPELLDGPDIEYLGEVGGAEKAELLGNARALLFPILWEEPFGLVMIEAMACGTPVIAFRR----GAVPEVVED 285 (335)
T ss_pred HHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhCcEEEeCCcccCCcchHHHHHHhcCCCEEEeCC----CCchhheeC
Confidence 11 1 111 25788889999875 4688899833323 234 3589999999999998755 233445554
Q ss_pred HhcceeEecCCCCCcccHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 036519 301 VWKMGLKVPADEKGIVRREAIAHCIGEILEGDKWRNFAKEAVAKGGSSDKNIDDFVAN 358 (365)
Q Consensus 301 ~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~~~~~~g~s~~~~~~~~~~ 358 (365)
. ..|...+ . .+++.+++.++++.. ++++++.+.+.-+.++.+++.++.
T Consensus 286 ~-~~g~l~~-----~--~~~l~~~l~~l~~~~--~~~~~~~~~~~~s~~~~~~~~~~~ 333 (335)
T cd03802 286 G-VTGFLVD-----S--VEELAAAVARADRLD--RAACRRRAERRFSAARMVDDYLAL 333 (335)
T ss_pred C-CcEEEeC-----C--HHHHHHHHHHHhccH--HHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4 4676665 3 999999999997643 456666666666666666666654
No 72
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.55 E-value=6.4e-06 Score=75.67 Aligned_cols=102 Identities=16% Similarity=0.057 Sum_probs=69.4
Q ss_pred CCCCeEEeecchhh---hhcccccccccccC----ChhhHHHHHHcCCCeeeccccCchhhHHHHHHhHhcceeEecCCC
Q 036519 240 TQKGLVVNWCPQLG---VLAHEATGCFLTHC----GWNSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVWKMGLKVPADE 312 (365)
Q Consensus 240 ~~~~~~~~~~p~~~---~L~~~~~~~~I~hg----G~gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~ 312 (365)
.+++.+.+|+++.+ ++..+++ +|.-. -.+++.||+++|+|+|+.+.. .....+. . +.|...+.
T Consensus 261 ~~~v~~~g~~~~~~~~~~~~~adv--~v~ps~~e~~~~~~~Eama~G~PvI~~~~~----~~~~~~~-~-~~~~~~~~-- 330 (375)
T cd03821 261 EDRVTFTGMLYGEDKAAALADADL--FVLPSHSENFGIVVAEALACGTPVVTTDKV----PWQELIE-Y-GCGWVVDD-- 330 (375)
T ss_pred cceEEEcCCCChHHHHHHHhhCCE--EEeccccCCCCcHHHHHHhcCCCEEEcCCC----CHHHHhh-c-CceEEeCC--
Confidence 46788889998554 6889998 65432 257899999999999987542 3333343 3 66766653
Q ss_pred CCcccHHHHHHHHHHHhcCH----HHHHHHHHHHHcCCCcHHHHHHH
Q 036519 313 KGIVRREAIAHCIGEILEGD----KWRNFAKEAVAKGGSSDKNIDDF 355 (365)
Q Consensus 313 ~~~~~~~~l~~~i~~ll~~~----~~~~~a~~~~~~~g~s~~~~~~~ 355 (365)
+.+++.++|.++++|+ ++.+++++..++.-+.+..++++
T Consensus 331 ----~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 373 (375)
T cd03821 331 ----DVDALAAALRRALELPQRLKAMGENGRALVEERFSWTAIAQQL 373 (375)
T ss_pred ----ChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHh
Confidence 3499999999999986 45555555545544445444444
No 73
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.53 E-value=3.3e-06 Score=77.65 Aligned_cols=107 Identities=20% Similarity=0.290 Sum_probs=75.9
Q ss_pred cCCCCeEEe-ecchh---hhhcccccccccc--c----CChhhHHHHHHcCCCeeeccccCchhhHHHHHHhHhcceeEe
Q 036519 239 TTQKGLVVN-WCPQL---GVLAHEATGCFLT--H----CGWNSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVWKMGLKV 308 (365)
Q Consensus 239 ~~~~~~~~~-~~p~~---~~L~~~~~~~~I~--h----gG~gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~~ 308 (365)
..+++...+ |+++. .+++.+|+ +|. + |..+++.||+++|+|+|+.+..+ ...+... +.|...
T Consensus 245 ~~~~v~~~~~~~~~~~~~~~~~~ad~--~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i~~~-~~g~~~ 316 (366)
T cd03822 245 LADRVIFINRYLPDEELPELFSAADV--VVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEVLDG-GTGLLV 316 (366)
T ss_pred CCCcEEEecCcCCHHHHHHHHhhcCE--EEecccccccccchHHHHHHHcCCCEEecCCCC-----hheeeeC-CCcEEE
Confidence 345676665 58754 58999999 663 2 44578999999999999877543 3445667 788887
Q ss_pred cCCCCCcccHHHHHHHHHHHhcCH----HHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 036519 309 PADEKGIVRREAIAHCIGEILEGD----KWRNFAKEAVAKGGSSDKNIDDFVANL 359 (365)
Q Consensus 309 ~~~~~~~~~~~~l~~~i~~ll~~~----~~~~~a~~~~~~~g~s~~~~~~~~~~i 359 (365)
+. -+.+++.+++.++++|+ ++++++++..++ -+-+..++++.+.+
T Consensus 317 ~~-----~d~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~-~s~~~~~~~~~~~~ 365 (366)
T cd03822 317 PP-----GDPAALAEAIRRLLADPELAQALRARAREYARA-MSWERVAERYLRLL 365 (366)
T ss_pred cC-----CCHHHHHHHHHHHHcChHHHHHHHHHHHHHHhh-CCHHHHHHHHHHHh
Confidence 74 36899999999999985 355555555555 55666666666554
No 74
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.47 E-value=5.9e-06 Score=75.63 Aligned_cols=104 Identities=22% Similarity=0.281 Sum_probs=69.6
Q ss_pred CCCeEEeecc-hhhhhcccccccccccCC----hhhHHHHHHcCCCeeeccccCchhhHHHHHHhHhcceeEecCCCCCc
Q 036519 241 QKGLVVNWCP-QLGVLAHEATGCFLTHCG----WNSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVWKMGLKVPADEKGI 315 (365)
Q Consensus 241 ~~~~~~~~~p-~~~~L~~~~~~~~I~hgG----~gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~ 315 (365)
+++.+.+..+ ...++..+++ +|..+. .+++.||+++|+|+|+... ..+...+.+. |..++.
T Consensus 251 ~~v~~~g~~~~~~~~~~~adi--~v~ps~~e~~~~~~~Ea~a~g~PvI~~~~----~~~~e~~~~~---g~~~~~----- 316 (365)
T cd03807 251 DKVILLGERSDVPALLNALDV--FVLSSLSEGFPNVLLEAMACGLPVVATDV----GDNAELVGDT---GFLVPP----- 316 (365)
T ss_pred ceEEEccccccHHHHHHhCCE--EEeCCccccCCcHHHHHHhcCCCEEEcCC----CChHHHhhcC---CEEeCC-----
Confidence 4455554433 3358999999 776544 4899999999999988543 4455555543 445553
Q ss_pred ccHHHHHHHHHHHhcCHH----HHHHHHHHHHcCCCcHHHHHHHHHH
Q 036519 316 VRREAIAHCIGEILEGDK----WRNFAKEAVAKGGSSDKNIDDFVAN 358 (365)
Q Consensus 316 ~~~~~l~~~i~~ll~~~~----~~~~a~~~~~~~g~s~~~~~~~~~~ 358 (365)
-+++++.+++.++++|++ +.+++++.+++.-+-+..++++.+.
T Consensus 317 ~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 363 (365)
T cd03807 317 GDPEALAEAIEALLADPALRQALGEAARERIEENFSIEAMVEAYEEL 363 (365)
T ss_pred CCHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 369999999999998863 3445555555555566666666654
No 75
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.47 E-value=1.4e-05 Score=73.40 Aligned_cols=83 Identities=22% Similarity=0.258 Sum_probs=62.9
Q ss_pred cCCCCeEEeecchh---hhhcccccccccc----------cCChhhHHHHHHcCCCeeeccccCchhhHHHHHHhHhcce
Q 036519 239 TTQKGLVVNWCPQL---GVLAHEATGCFLT----------HCGWNSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVWKMG 305 (365)
Q Consensus 239 ~~~~~~~~~~~p~~---~~L~~~~~~~~I~----------hgG~gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~~G~G 305 (365)
.++++.+.+++++. .++..+++ ++. -|..+++.||+++|+|+|+.+.. .....+++. ..|
T Consensus 234 ~~~~v~~~g~~~~~~l~~~~~~adi--~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~----~~~~~i~~~-~~g 306 (355)
T cd03799 234 LEDRVTLLGAKSQEEVRELLRAADL--FVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVS----GIPELVEDG-ETG 306 (355)
T ss_pred CCCeEEECCcCChHHHHHHHHhCCE--EEecceecCCCCccCccHHHHHHHHcCCCEEecCCC----CcchhhhCC-Cce
Confidence 35678888999754 47888998 665 34458999999999999986542 233455555 688
Q ss_pred eEecCCCCCcccHHHHHHHHHHHhcCHH
Q 036519 306 LKVPADEKGIVRREAIAHCIGEILEGDK 333 (365)
Q Consensus 306 ~~~~~~~~~~~~~~~l~~~i~~ll~~~~ 333 (365)
..++. -+.+++.++|.++++|+.
T Consensus 307 ~~~~~-----~~~~~l~~~i~~~~~~~~ 329 (355)
T cd03799 307 LLVPP-----GDPEALADAIERLLDDPE 329 (355)
T ss_pred EEeCC-----CCHHHHHHHHHHHHhCHH
Confidence 88873 479999999999998874
No 76
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.45 E-value=6e-06 Score=75.03 Aligned_cols=88 Identities=20% Similarity=0.214 Sum_probs=63.1
Q ss_pred CCCCeEEeecchh-hhhccccccccccc----CChhhHHHHHHcCCCeeeccccCchhhHHHHHHhHhcceeEecCCCCC
Q 036519 240 TQKGLVVNWCPQL-GVLAHEATGCFLTH----CGWNSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVWKMGLKVPADEKG 314 (365)
Q Consensus 240 ~~~~~~~~~~p~~-~~L~~~~~~~~I~h----gG~gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~ 314 (365)
.+++.+.+|.+.. .++..+++ +|.- |..+++.||+++|+|+|+... ......+++. +.|...+.
T Consensus 245 ~~~v~~~g~~~~~~~~~~~~d~--~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~----~~~~e~i~~~-~~g~~~~~---- 313 (353)
T cd03811 245 ADRVHFLGFQSNPYPYLKAADL--FVLSSRYEGFPNVLLEAMALGTPVVATDC----PGPREILEDG-ENGLLVPV---- 313 (353)
T ss_pred CccEEEecccCCHHHHHHhCCE--EEeCcccCCCCcHHHHHHHhCCCEEEcCC----CChHHHhcCC-CceEEECC----
Confidence 4567777776643 58999998 6632 445789999999999988544 3667788888 88988874
Q ss_pred cccHHHH---HHHHHHHhcCHHHHHHHH
Q 036519 315 IVRREAI---AHCIGEILEGDKWRNFAK 339 (365)
Q Consensus 315 ~~~~~~l---~~~i~~ll~~~~~~~~a~ 339 (365)
-+.+.+ .+++.+++++++.++.++
T Consensus 314 -~~~~~~~~~~~~i~~~~~~~~~~~~~~ 340 (353)
T cd03811 314 -GDEAALAAAALALLDLLLDPELRERLA 340 (353)
T ss_pred -CCHHHHHHHHHHHHhccCChHHHHHHH
Confidence 367777 677777777765444433
No 77
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.44 E-value=8.5e-05 Score=70.70 Aligned_cols=108 Identities=19% Similarity=0.237 Sum_probs=75.0
Q ss_pred CCCCeEEeecchhh---hhccc----ccccccccC---C-hhhHHHHHHcCCCeeeccccCchhhHHHHHHhHhcceeEe
Q 036519 240 TQKGLVVNWCPQLG---VLAHE----ATGCFLTHC---G-WNSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVWKMGLKV 308 (365)
Q Consensus 240 ~~~~~~~~~~p~~~---~L~~~----~~~~~I~hg---G-~gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~~ 308 (365)
.+++...+++++.+ +++.+ |+ +|... | ..++.||+++|+|+|+... ..+...+++. ..|+.+
T Consensus 316 ~~~V~f~g~~~~~~~~~~~~~a~~~~Dv--~v~pS~~E~fg~~~lEAma~G~PvV~s~~----gg~~eiv~~~-~~G~lv 388 (439)
T TIGR02472 316 YGKVAYPKHHRPDDVPELYRLAARSRGI--FVNPALTEPFGLTLLEAAACGLPIVATDD----GGPRDIIANC-RNGLLV 388 (439)
T ss_pred CceEEecCCCCHHHHHHHHHHHhhcCCE--EecccccCCcccHHHHHHHhCCCEEEeCC----CCcHHHhcCC-CcEEEe
Confidence 46677777777654 46655 66 77653 3 4699999999999988754 3355566666 678887
Q ss_pred cCCCCCcccHHHHHHHHHHHhcCHH----HHHHHHHHHHcCCCcHHHHHHHHHHH
Q 036519 309 PADEKGIVRREAIAHCIGEILEGDK----WRNFAKEAVAKGGSSDKNIDDFVANL 359 (365)
Q Consensus 309 ~~~~~~~~~~~~l~~~i~~ll~~~~----~~~~a~~~~~~~g~s~~~~~~~~~~i 359 (365)
+. -+++++.++|.++++|++ +.+++++.+.+.-+-+..++++.+.+
T Consensus 389 ~~-----~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fsw~~~~~~~~~l~ 438 (439)
T TIGR02472 389 DV-----LDLEAIASALEDALSDSSQWQLWSRNGIEGVRRHYSWDAHVEKYLRIL 438 (439)
T ss_pred CC-----CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 74 478999999999999874 44555554555555566666666554
No 78
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=98.40 E-value=1.1e-05 Score=72.62 Aligned_cols=319 Identities=16% Similarity=0.178 Sum_probs=173.6
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhCC-CeEEEEeCcccc--ccccCCCCCCCCeeEEEcC-CCCCCCCCCCcCCHH
Q 036519 13 KLAHCLVLSYPAQGHMNPLLQFSKRLEHNG-IKVTLVTTYFIS--KSLHRDPSSSISIPLETIS-DGYDEGRSAQAETDQ 88 (365)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~la~~L~~~G-h~Vt~~~~~~~~--~~v~~~~~~~~gi~~~~l~-~~~~~~~~~~~~~~~ 88 (365)
+|+||+ +.+|+.=.+.-+-+|.+++.+.+ .+..++.|.... +... ..++...+. +++.-.-.....++.
T Consensus 2 ~~~Kv~-~I~GTRPE~iKmapli~~~~~~~~~~~~vi~TGQH~d~em~~------~~le~~~i~~pdy~L~i~~~~~tl~ 74 (383)
T COG0381 2 KMLKVL-TIFGTRPEAIKMAPLVKALEKDPDFELIVIHTGQHRDYEMLD------QVLELFGIRKPDYDLNIMKPGQTLG 74 (383)
T ss_pred CceEEE-EEEecCHHHHHHhHHHHHHHhCCCCceEEEEecccccHHHHH------HHHHHhCCCCCCcchhccccCCCHH
Confidence 345554 45677888888899999999986 888888777666 3333 222222222 111110122234444
Q ss_pred HHHHHHHHHhHHHHHHHHHhcCCCcEEE--EcCCCc-cHHHHHHHhCCceEEEecc----cHH-HHHHHHHh--------
Q 036519 89 AYVDRFWQIGVQTLTELVERMNDVDCIV--YDSFLP-WALDVAKKFGLTGAAFLTQ----SCT-VASIYHYV-------- 152 (365)
Q Consensus 89 ~~~~~~~~~~~~~l~~ll~~~~~pD~vv--~D~~~~-~a~~~A~~~giP~v~~~~~----~~~-~~~~~~~~-------- 152 (365)
........ .+.+++++. +||+|+ .|..+. ++..+|-.++||+.-+-.. ..+ ........
T Consensus 75 ~~t~~~i~----~~~~vl~~~-kPD~VlVhGDT~t~lA~alaa~~~~IpV~HvEAGlRt~~~~~PEE~NR~l~~~~S~~h 149 (383)
T COG0381 75 EITGNIIE----GLSKVLEEE-KPDLVLVHGDTNTTLAGALAAFYLKIPVGHVEAGLRTGDLYFPEEINRRLTSHLSDLH 149 (383)
T ss_pred HHHHHHHH----HHHHHHHhh-CCCEEEEeCCcchHHHHHHHHHHhCCceEEEecccccCCCCCcHHHHHHHHHHhhhhh
Confidence 44444333 467888888 999998 465554 4589999999999843221 111 11111110
Q ss_pred ------hcc-cccCCCCCCccccCCCCCCCC--------C---CCCCc-cCCCCCchhHHHHHHHhhhhccccchhHhHh
Q 036519 153 ------NKG-LIKLPLTGDQVFLPGLPPLDP--------Q---DTPSF-INDPASYPAFFDMILTRQFSNIDKADWILCN 213 (365)
Q Consensus 153 ------~~~-~~~~~~~~~~~~~pg~p~~~~--------~---~lp~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (365)
... .+.-.-....+.+.|-+..+. . ..... +.. .....+.... .. ..++.+....+..
T Consensus 150 fapte~ar~nLl~EG~~~~~IfvtGnt~iDal~~~~~~~~~~~~~~~~~~~~-~~~~~iLvT~-HR-reN~~~~~~~i~~ 226 (383)
T COG0381 150 FAPTEIARKNLLREGVPEKRIFVTGNTVIDALLNTRDRVLEDSKILAKGLDD-KDKKYILVTA-HR-RENVGEPLEEICE 226 (383)
T ss_pred cCChHHHHHHHHHcCCCccceEEeCChHHHHHHHHHhhhccchhhHHhhhcc-ccCcEEEEEc-ch-hhcccccHHHHHH
Confidence 000 001111122355556552210 0 00000 111 1111111111 00 0111122223333
Q ss_pred hHhhhhh-----hhhCchhhCCCCcccc-cccC--CCCeEEe---ecchhhhhcccccccccccCChhhHHHHHHcCCCe
Q 036519 214 TFYELEK-----EVIKESEQSKLPENFS-DETT--QKGLVVN---WCPQLGVLAHEATGCFLTHCGWNSTIEALRLGVPM 282 (365)
Q Consensus 214 ~~~~l~~-----~~~~~~~~~~~p~~~~-~~~~--~~~~~~~---~~p~~~~L~~~~~~~~I~hgG~gs~~eal~~GvP~ 282 (365)
++.++-. .++-+.+..+.-..+. ..+. +++++.+ |.+...++.+|-+ ++|-.| |-.-||...|+|+
T Consensus 227 al~~i~~~~~~~~viyp~H~~~~v~e~~~~~L~~~~~v~li~pl~~~~f~~L~~~a~~--iltDSG-giqEEAp~lg~Pv 303 (383)
T COG0381 227 ALREIAEEYPDVIVIYPVHPRPRVRELVLKRLKNVERVKLIDPLGYLDFHNLMKNAFL--ILTDSG-GIQEEAPSLGKPV 303 (383)
T ss_pred HHHHHHHhCCCceEEEeCCCChhhhHHHHHHhCCCCcEEEeCCcchHHHHHHHHhceE--EEecCC-chhhhHHhcCCcE
Confidence 3333321 2233322221111111 2233 3466653 7788889999999 999988 4568999999999
Q ss_pred eeccccCchhhHHHHHHhHhcceeEecCCCCCcccHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh
Q 036519 283 LAMPLWTDQSTNSKYVMDVWKMGLKVPADEKGIVRREAIAHCIGEILEGDKWRNFAKEAVAKGGSSDKNIDDFVANLIS 361 (365)
Q Consensus 283 v~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~~~~~~g~s~~~~~~~~~~i~~ 361 (365)
+++-...|++. ++ +. |.-+.+. .+.+.|.+++.+++++++..++++.+....|... +.+++++.|.+
T Consensus 304 l~lR~~TERPE---~v-~a-gt~~lvg------~~~~~i~~~~~~ll~~~~~~~~m~~~~npYgdg~-as~rIv~~l~~ 370 (383)
T COG0381 304 LVLRDTTERPE---GV-EA-GTNILVG------TDEENILDAATELLEDEEFYERMSNAKNPYGDGN-ASERIVEILLN 370 (383)
T ss_pred EeeccCCCCcc---ce-ec-CceEEeC------ccHHHHHHHHHHHhhChHHHHHHhcccCCCcCcc-hHHHHHHHHHH
Confidence 99998889887 33 34 4444443 4679999999999999999998888766655433 66666666654
No 79
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=98.39 E-value=0.00025 Score=72.49 Aligned_cols=109 Identities=17% Similarity=0.120 Sum_probs=73.4
Q ss_pred CCCCeEEeecchhh---hhccc----cccccccc---CC-hhhHHHHHHcCCCeeeccccCchhhHHHHHHhHhcceeEe
Q 036519 240 TQKGLVVNWCPQLG---VLAHE----ATGCFLTH---CG-WNSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVWKMGLKV 308 (365)
Q Consensus 240 ~~~~~~~~~~p~~~---~L~~~----~~~~~I~h---gG-~gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~~ 308 (365)
.+++.+.+|+++.+ ++..+ ++ ||+- =| ..++.||+++|+|+|+.... .....++.. .-|+.+
T Consensus 547 ~g~V~FlG~v~~edvp~lYr~Ad~s~DV--FV~PS~~EgFGLvlLEAMAcGlPVVASdvG----G~~EII~~g-~nGlLV 619 (1050)
T TIGR02468 547 YGQVAYPKHHKQSDVPDIYRLAAKTKGV--FINPAFIEPFGLTLIEAAAHGLPMVATKNG----GPVDIHRVL-DNGLLV 619 (1050)
T ss_pred CCeEEecCCCCHHHHHHHHHHhhhcCCe--eeCCcccCCCCHHHHHHHHhCCCEEEeCCC----CcHHHhccC-CcEEEE
Confidence 35677777877654 56655 35 7764 23 47899999999999988643 233455555 568887
Q ss_pred cCCCCCcccHHHHHHHHHHHhcCHHH----HHHHHHHHHcCCCcHHHHHHHHHHHHh
Q 036519 309 PADEKGIVRREAIAHCIGEILEGDKW----RNFAKEAVAKGGSSDKNIDDFVANLIS 361 (365)
Q Consensus 309 ~~~~~~~~~~~~l~~~i~~ll~~~~~----~~~a~~~~~~~g~s~~~~~~~~~~i~~ 361 (365)
+. -++++|+++|.++++|++. .+++++.+.. -+-...+++.++.+.+
T Consensus 620 dP-----~D~eaLA~AL~~LL~Dpelr~~m~~~gr~~v~~-FSWe~ia~~yl~~i~~ 670 (1050)
T TIGR02468 620 DP-----HDQQAIADALLKLVADKQLWAECRQNGLKNIHL-FSWPEHCKTYLSRIAS 670 (1050)
T ss_pred CC-----CCHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHH
Confidence 74 4799999999999999754 4444444433 4445566666666554
No 80
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.39 E-value=2.3e-05 Score=72.03 Aligned_cols=105 Identities=19% Similarity=0.175 Sum_probs=68.0
Q ss_pred CCCCeEEeecch-hhhhcccccccccccC----ChhhHHHHHHcCCCeeeccccCchhhHHHHHHhHhcceeEecCCCCC
Q 036519 240 TQKGLVVNWCPQ-LGVLAHEATGCFLTHC----GWNSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVWKMGLKVPADEKG 314 (365)
Q Consensus 240 ~~~~~~~~~~p~-~~~L~~~~~~~~I~hg----G~gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~ 314 (365)
.+++.+.++.+. ..+|..+|+ +|.-. ..+++.||+++|+|+|+. |...+...+++. |.. +..
T Consensus 244 ~~~v~~~g~~~~~~~~~~~ad~--~v~~s~~e~~~~~~~Ea~a~G~PvI~~----~~~~~~e~i~~~-g~~--~~~---- 310 (360)
T cd04951 244 SNRVKLLGLRDDIAAYYNAADL--FVLSSAWEGFGLVVAEAMACELPVVAT----DAGGVREVVGDS-GLI--VPI---- 310 (360)
T ss_pred CCcEEEecccccHHHHHHhhce--EEecccccCCChHHHHHHHcCCCEEEe----cCCChhhEecCC-ceE--eCC----
Confidence 356777777654 358999999 66543 257899999999999874 444555566655 544 442
Q ss_pred cccHHHHHHHHHHHh-cCHHHHHHHHH---HHHcCCCcHHHHHHHHHH
Q 036519 315 IVRREAIAHCIGEIL-EGDKWRNFAKE---AVAKGGSSDKNIDDFVAN 358 (365)
Q Consensus 315 ~~~~~~l~~~i~~ll-~~~~~~~~a~~---~~~~~g~s~~~~~~~~~~ 358 (365)
-+.+++.+++.+++ .++..++.+.+ ...+.=+-+...+++.+.
T Consensus 311 -~~~~~~~~~i~~ll~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 357 (360)
T cd04951 311 -SDPEALANKIDEILKMSGEERDIIGARRERIVKKFSINSIVQQWLTL 357 (360)
T ss_pred -CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 37899999999998 45555443332 233344444555555443
No 81
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.33 E-value=1e-05 Score=74.89 Aligned_cols=83 Identities=12% Similarity=0.143 Sum_probs=60.4
Q ss_pred cCCCCeEEeecch--h---hhhccccccccccc----CChhhHHHHHHcCCCeeecc-ccCchhhHHHHHHhHhcceeEe
Q 036519 239 TTQKGLVVNWCPQ--L---GVLAHEATGCFLTH----CGWNSTIEALRLGVPMLAMP-LWTDQSTNSKYVMDVWKMGLKV 308 (365)
Q Consensus 239 ~~~~~~~~~~~p~--~---~~L~~~~~~~~I~h----gG~gs~~eal~~GvP~v~~P-~~~DQ~~nA~~v~~~~G~G~~~ 308 (365)
.++++.+.+|++. . ..+..+++ +|.. |-..++.||+++|+|+|+.- .. .....+++. ..|..+
T Consensus 234 l~~~v~f~G~~~~~~~~~~~~~~~~d~--~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~----g~~eiv~~~-~~G~lv 306 (359)
T PRK09922 234 IEQRIIWHGWQSQPWEVVQQKIKNVSA--LLLTSKFEGFPMTLLEAMSYGIPCISSDCMS----GPRDIIKPG-LNGELY 306 (359)
T ss_pred CCCeEEEecccCCcHHHHHHHHhcCcE--EEECCcccCcChHHHHHHHcCCCEEEeCCCC----ChHHHccCC-CceEEE
Confidence 3567888888754 2 24556787 6643 33689999999999998865 32 233456666 678887
Q ss_pred cCCCCCcccHHHHHHHHHHHhcCHH
Q 036519 309 PADEKGIVRREAIAHCIGEILEGDK 333 (365)
Q Consensus 309 ~~~~~~~~~~~~l~~~i~~ll~~~~ 333 (365)
+. -+.+++.++|.++++|++
T Consensus 307 ~~-----~d~~~la~~i~~l~~~~~ 326 (359)
T PRK09922 307 TP-----GNIDEFVGKLNKVISGEV 326 (359)
T ss_pred CC-----CCHHHHHHHHHHHHhCcc
Confidence 73 489999999999998875
No 82
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.31 E-value=0.0001 Score=73.19 Aligned_cols=110 Identities=23% Similarity=0.179 Sum_probs=79.8
Q ss_pred CCCCeEEeecchh-hhhcccccccccc---cCC-hhhHHHHHHcCCCeeeccccCchhhHHHHHHhHhcceeEecCCCCC
Q 036519 240 TQKGLVVNWCPQL-GVLAHEATGCFLT---HCG-WNSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVWKMGLKVPADEKG 314 (365)
Q Consensus 240 ~~~~~~~~~~p~~-~~L~~~~~~~~I~---hgG-~gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~ 314 (365)
.+++.+.+|.+.. .+|..+|+ +|. +.| .+++.||+++|+|+|+.... .....+++. ..|+.++..
T Consensus 573 ~~~V~flG~~~dv~~ll~aaDv--~VlpS~~Egfp~vlLEAMA~G~PVVat~~g----G~~EiV~dg-~~GlLv~~~--- 642 (694)
T PRK15179 573 GERILFTGLSRRVGYWLTQFNA--FLLLSRFEGLPNVLIEAQFSGVPVVTTLAG----GAGEAVQEG-VTGLTLPAD--- 642 (694)
T ss_pred CCcEEEcCCcchHHHHHHhcCE--EEeccccccchHHHHHHHHcCCeEEEECCC----ChHHHccCC-CCEEEeCCC---
Confidence 4678888887644 48999999 664 455 48999999999999987642 355567666 678888765
Q ss_pred cccHHHHHHHHHHHh----cCHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 036519 315 IVRREAIAHCIGEIL----EGDKWRNFAKEAVAKGGSSDKNIDDFVANL 359 (365)
Q Consensus 315 ~~~~~~l~~~i~~ll----~~~~~~~~a~~~~~~~g~s~~~~~~~~~~i 359 (365)
+.+++++.+++.+++ +++.+++++++.+.+.-+.++.++++.+.-
T Consensus 643 d~~~~~La~aL~~ll~~l~~~~~l~~~ar~~a~~~FS~~~~~~~~~~lY 691 (694)
T PRK15179 643 TVTAPDVAEALARIHDMCAADPGIARKAADWASARFSLNQMIASTVRCY 691 (694)
T ss_pred CCChHHHHHHHHHHHhChhccHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 556667777766655 467888888887766666666777766543
No 83
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.31 E-value=4.5e-05 Score=70.23 Aligned_cols=105 Identities=19% Similarity=0.139 Sum_probs=67.6
Q ss_pred cCCCCeEEeecchhh---hhcccccccccccCCh-----hhHHHHHHcCCCeeeccccCchhhHHHHHHhHhcceeEecC
Q 036519 239 TTQKGLVVNWCPQLG---VLAHEATGCFLTHCGW-----NSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVWKMGLKVPA 310 (365)
Q Consensus 239 ~~~~~~~~~~~p~~~---~L~~~~~~~~I~hgG~-----gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~~~~ 310 (365)
..+++.+.+++++.+ ++..+++ ++.++-. +++.||+++|+|+|+....+ +...++.. |. ....
T Consensus 246 ~~~~V~~~g~~~~~~~~~~~~~ad~--~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~----~~e~~~~~-g~--~~~~ 316 (363)
T cd04955 246 ADPRIIFVGPIYDQELLELLRYAAL--FYLHGHSVGGTNPSLLEAMAYGCPVLASDNPF----NREVLGDK-AI--YFKV 316 (363)
T ss_pred CCCcEEEccccChHHHHHHHHhCCE--EEeCCccCCCCChHHHHHHHcCCCEEEecCCc----cceeecCC-ee--EecC
Confidence 346888889998764 6777787 5554322 57999999999999876432 22223323 33 3332
Q ss_pred CCCCcccHHHHHHHHHHHhcCH----HHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 036519 311 DEKGIVRREAIAHCIGEILEGD----KWRNFAKEAVAKGGSSDKNIDDFVANL 359 (365)
Q Consensus 311 ~~~~~~~~~~l~~~i~~ll~~~----~~~~~a~~~~~~~g~s~~~~~~~~~~i 359 (365)
. + . +.+++.++++|+ ++.+++++...+.-+-+..++++++..
T Consensus 317 ~---~--~--l~~~i~~l~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~y 362 (363)
T cd04955 317 G---D--D--LASLLEELEADPEEVSAMAKAARERIREKYTWEKIADQYEELY 362 (363)
T ss_pred c---h--H--HHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 1 1 2 999999999886 345555555555556666777776654
No 84
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.25 E-value=2.6e-05 Score=73.21 Aligned_cols=107 Identities=21% Similarity=0.145 Sum_probs=75.1
Q ss_pred CCCCeEEeecchh-hhhccccccccc--cc--CCh-hhHHHHHHcCCCeeeccccCchhhHHHHHHhHhcceeEecCCCC
Q 036519 240 TQKGLVVNWCPQL-GVLAHEATGCFL--TH--CGW-NSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVWKMGLKVPADEK 313 (365)
Q Consensus 240 ~~~~~~~~~~p~~-~~L~~~~~~~~I--~h--gG~-gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~ 313 (365)
.+++.+.++++.. .++..+|+ +| ++ .|. +.+.||+++|+|+|+.+...+. ..+.. |.|+.+. .
T Consensus 279 ~~~V~~~G~v~~~~~~~~~adv--~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~-----i~~~~-~~g~lv~-~-- 347 (397)
T TIGR03087 279 LPGVTVTGSVADVRPYLAHAAV--AVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEG-----IDALP-GAELLVA-A-- 347 (397)
T ss_pred CCCeEEeeecCCHHHHHHhCCE--EEecccccCCcccHHHHHHHcCCCEEecCccccc-----ccccC-CcceEeC-C--
Confidence 3578888888854 48899999 65 32 354 4699999999999998753322 12335 6676665 3
Q ss_pred CcccHHHHHHHHHHHhcCHH----HHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 036519 314 GIVRREAIAHCIGEILEGDK----WRNFAKEAVAKGGSSDKNIDDFVANLI 360 (365)
Q Consensus 314 ~~~~~~~l~~~i~~ll~~~~----~~~~a~~~~~~~g~s~~~~~~~~~~i~ 360 (365)
+++++.++|.++++|++ +.+++++.+.+.-+-+..++++.+.+.
T Consensus 348 ---~~~~la~ai~~ll~~~~~~~~~~~~ar~~v~~~fsw~~~~~~~~~~l~ 395 (397)
T TIGR03087 348 ---DPADFAAAILALLANPAEREELGQAARRRVLQHYHWPRNLARLDALLE 395 (397)
T ss_pred ---CHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 68999999999999874 455556555555566667777766654
No 85
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.24 E-value=0.00025 Score=65.84 Aligned_cols=109 Identities=14% Similarity=0.106 Sum_probs=77.3
Q ss_pred CCCeEEeecc-hhhhhcccccccccc--c--CChhhHHHHHHcCCCeeeccccCchhhHHHHHHhHhcceeEecCCCCCc
Q 036519 241 QKGLVVNWCP-QLGVLAHEATGCFLT--H--CGWNSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVWKMGLKVPADEKGI 315 (365)
Q Consensus 241 ~~~~~~~~~p-~~~~L~~~~~~~~I~--h--gG~gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~ 315 (365)
+++++.++.. -..++..+|+ +|. + |-.+++.||+++|+|+|+... ..+...+++. ..|..++.
T Consensus 255 ~~v~~~g~~~~~~~~~~~adi--~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~----~g~~e~i~~~-~~g~~~~~----- 322 (374)
T TIGR03088 255 HLVWLPGERDDVPALMQALDL--FVLPSLAEGISNTILEAMASGLPVIATAV----GGNPELVQHG-VTGALVPP----- 322 (374)
T ss_pred ceEEEcCCcCCHHHHHHhcCE--EEeccccccCchHHHHHHHcCCCEEEcCC----CCcHHHhcCC-CceEEeCC-----
Confidence 3445544433 3458999999 663 3 446899999999999998654 3455667666 77888874
Q ss_pred ccHHHHHHHHHHHhcCHH----HHHHHHHHHHcCCCcHHHHHHHHHHHHh
Q 036519 316 VRREAIAHCIGEILEGDK----WRNFAKEAVAKGGSSDKNIDDFVANLIS 361 (365)
Q Consensus 316 ~~~~~l~~~i~~ll~~~~----~~~~a~~~~~~~g~s~~~~~~~~~~i~~ 361 (365)
-+++++.++|.++++|++ +.+++++.+.+.=+.+..++++++..++
T Consensus 323 ~d~~~la~~i~~l~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~y~~ 372 (374)
T TIGR03088 323 GDAVALARALQPYVSDPAARRAHGAAGRARAEQQFSINAMVAAYAGLYDQ 372 (374)
T ss_pred CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 478999999999998874 4455666565666677777777776554
No 86
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.22 E-value=3.4e-05 Score=70.98 Aligned_cols=90 Identities=17% Similarity=0.030 Sum_probs=63.7
Q ss_pred cCCCCeEEeecch-hhhhccccccccccc----CChhhHHHHHHcCCCeeeccccCchhhHHHHHHhHhcceeEecCCCC
Q 036519 239 TTQKGLVVNWCPQ-LGVLAHEATGCFLTH----CGWNSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVWKMGLKVPADEK 313 (365)
Q Consensus 239 ~~~~~~~~~~~p~-~~~L~~~~~~~~I~h----gG~gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~ 313 (365)
..+++...++..+ ..++..||+ +|+- |-.+++.||+++|+|+|+-...+ ....+++ +.|....
T Consensus 247 ~~~~v~~~g~~~~~~~~~~~adi--~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~----~~~~i~~--~~~~~~~---- 314 (358)
T cd03812 247 LEDKVIFLGVRNDVPELLQAMDV--FLFPSLYEGLPLVLIEAQASGLPCILSDTIT----KEVDLTD--LVKFLSL---- 314 (358)
T ss_pred CCCcEEEecccCCHHHHHHhcCE--EEecccccCCCHHHHHHHHhCCCEEEEcCCc----hhhhhcc--CccEEeC----
Confidence 3467777777444 358999999 6654 45689999999999998865533 3334443 4454554
Q ss_pred CcccHHHHHHHHHHHhcCHHHHHHHHHH
Q 036519 314 GIVRREAIAHCIGEILEGDKWRNFAKEA 341 (365)
Q Consensus 314 ~~~~~~~l~~~i~~ll~~~~~~~~a~~~ 341 (365)
.-++++++++|.++++|++.+++....
T Consensus 315 -~~~~~~~a~~i~~l~~~~~~~~~~~~~ 341 (358)
T cd03812 315 -DESPEIWAEEILKLKSEDRRERSSESI 341 (358)
T ss_pred -CCCHHHHHHHHHHHHhCcchhhhhhhh
Confidence 236899999999999998776666543
No 87
>PLN02275 transferase, transferring glycosyl groups
Probab=98.14 E-value=0.0003 Score=65.38 Aligned_cols=75 Identities=19% Similarity=0.225 Sum_probs=54.8
Q ss_pred CCCeEEe-ecchhh---hhcccccccccc----c--CC-hhhHHHHHHcCCCeeeccccCchhhHHHHHHhHhcceeEec
Q 036519 241 QKGLVVN-WCPQLG---VLAHEATGCFLT----H--CG-WNSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVWKMGLKVP 309 (365)
Q Consensus 241 ~~~~~~~-~~p~~~---~L~~~~~~~~I~----h--gG-~gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~~~ 309 (365)
+|+.... |+|+.+ +|+.+|+ +|. . -| -+++.||+++|+|+|+... ..+...+++. +.|..++
T Consensus 286 ~~v~~~~~~~~~~~~~~~l~~aDv--~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~----gg~~eiv~~g-~~G~lv~ 358 (371)
T PLN02275 286 RHVAFRTMWLEAEDYPLLLGSADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIGELVKDG-KNGLLFS 358 (371)
T ss_pred CceEEEcCCCCHHHHHHHHHhCCE--EEEeccccccccccHHHHHHHHCCCCEEEecC----CChHHHccCC-CCeEEEC
Confidence 4455544 787765 5999999 763 1 12 3589999999999998643 3366778777 8898765
Q ss_pred CCCCCcccHHHHHHHHHHHh
Q 036519 310 ADEKGIVRREAIAHCIGEIL 329 (365)
Q Consensus 310 ~~~~~~~~~~~l~~~i~~ll 329 (365)
+++++.++|.+++
T Consensus 359 -------~~~~la~~i~~l~ 371 (371)
T PLN02275 359 -------SSSELADQLLELL 371 (371)
T ss_pred -------CHHHHHHHHHHhC
Confidence 3789999998875
No 88
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.11 E-value=0.00066 Score=61.93 Aligned_cols=107 Identities=16% Similarity=0.175 Sum_probs=75.6
Q ss_pred CCeEEeecc-hhhhhcccccc----cccccCChhhHHHHHHcCCCeeeccccCchhhHHHHHHhHhcceeEecCCCCCcc
Q 036519 242 KGLVVNWCP-QLGVLAHEATG----CFLTHCGWNSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVWKMGLKVPADEKGIV 316 (365)
Q Consensus 242 ~~~~~~~~p-~~~~L~~~~~~----~~I~hgG~gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~ 316 (365)
++.+.+-+= -..++.-+|++ -++-+||+|- .|.+++|+|+|.=|+...|.+-++++.+. |.|+.++ +
T Consensus 301 dV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN~-LEpa~~~~pvi~Gp~~~Nf~ei~~~l~~~-ga~~~v~-----~- 372 (419)
T COG1519 301 DVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHNP-LEPAAFGTPVIFGPYTFNFSDIAERLLQA-GAGLQVE-----D- 372 (419)
T ss_pred cEEEEecHhHHHHHHhhccEEEECCcccCCCCCCh-hhHHHcCCCEEeCCccccHHHHHHHHHhc-CCeEEEC-----C-
Confidence 555665443 23355555542 1456999985 79999999999999999999999999999 9999998 4
Q ss_pred cHHHHHHHHHHHhcCHHHH----HHHHHHHHcCCCcHHHHHHHHHHHH
Q 036519 317 RREAIAHCIGEILEGDKWR----NFAKEAVAKGGSSDKNIDDFVANLI 360 (365)
Q Consensus 317 ~~~~l~~~i~~ll~~~~~~----~~a~~~~~~~g~s~~~~~~~~~~i~ 360 (365)
.+.+.+++..+++|++.+ +++.+..++..+ +++...+.|+
T Consensus 373 -~~~l~~~v~~l~~~~~~r~~~~~~~~~~v~~~~g---al~r~l~~l~ 416 (419)
T COG1519 373 -ADLLAKAVELLLADEDKREAYGRAGLEFLAQNRG---ALARTLEALK 416 (419)
T ss_pred -HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhH---HHHHHHHHhh
Confidence 788899998888887444 444444444322 4444444443
No 89
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.01 E-value=0.00018 Score=68.01 Aligned_cols=134 Identities=10% Similarity=0.015 Sum_probs=77.3
Q ss_pred hhHhHhhHhhhhhhh----hCchhhCCCCccccccc---CCCCe-EEeecchhhhhccccccccccc----CChhhHHHH
Q 036519 208 DWILCNTFYELEKEV----IKESEQSKLPENFSDET---TQKGL-VVNWCPQLGVLAHEATGCFLTH----CGWNSTIEA 275 (365)
Q Consensus 208 ~~~~~~~~~~l~~~~----~~~~~~~~~p~~~~~~~---~~~~~-~~~~~p~~~~L~~~~~~~~I~h----gG~gs~~ea 275 (365)
...++.++..+.... +.-.+.++..+.+.+.. +-+.. ..++.+...++..+|+ ||.- +=.+++.||
T Consensus 243 ~~~Li~a~~~l~~~~~~~~l~ivGdGp~~~~L~~~a~~l~l~~~vf~G~~~~~~~~~~~Dv--Fv~pS~~Et~g~v~lEA 320 (462)
T PLN02846 243 YKELLKLLHKHQKELSGLEVDLYGSGEDSDEVKAAAEKLELDVRVYPGRDHADPLFHDYKV--FLNPSTTDVVCTTTAEA 320 (462)
T ss_pred HHHHHHHHHHHHhhCCCeEEEEECCCccHHHHHHHHHhcCCcEEEECCCCCHHHHHHhCCE--EEECCCcccchHHHHHH
Confidence 356777777664321 22334444434333222 21222 3356666679999998 8877 445889999
Q ss_pred HHcCCCeeeccccCchhhHHHHHHhHhcceeEecCCCCCcccHHHHHHHHHHHhcCHH--HHHHHHHHHHcCCCcHHHHH
Q 036519 276 LRLGVPMLAMPLWTDQSTNSKYVMDVWKMGLKVPADEKGIVRREAIAHCIGEILEGDK--WRNFAKEAVAKGGSSDKNID 353 (365)
Q Consensus 276 l~~GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~--~~~~a~~~~~~~g~s~~~~~ 353 (365)
+++|+|+|+.-..+ + ..+.+- +-|...+ +.+++.+++.++|+++. .+.++ .+.-+-+.+.+
T Consensus 321 mA~G~PVVa~~~~~----~-~~v~~~-~ng~~~~-------~~~~~a~ai~~~l~~~~~~~~~~a----~~~~SWe~~~~ 383 (462)
T PLN02846 321 LAMGKIVVCANHPS----N-EFFKQF-PNCRTYD-------DGKGFVRATLKALAEEPAPLTDAQ----RHELSWEAATE 383 (462)
T ss_pred HHcCCcEEEecCCC----c-ceeecC-CceEecC-------CHHHHHHHHHHHHccCchhHHHHH----HHhCCHHHHHH
Confidence 99999999986543 2 333334 4443332 57899999999997532 22221 22333445555
Q ss_pred HHHHHHH
Q 036519 354 DFVANLI 360 (365)
Q Consensus 354 ~~~~~i~ 360 (365)
++++...
T Consensus 384 ~l~~~~~ 390 (462)
T PLN02846 384 RFLRVAD 390 (462)
T ss_pred HHHHHhc
Confidence 5555443
No 90
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=97.99 E-value=7.5e-06 Score=62.98 Aligned_cols=63 Identities=19% Similarity=0.264 Sum_probs=52.4
Q ss_pred Eeecch-hhhhcccccccccccCChhhHHHHHHcCCCeeeccc----cCchhhHHHHHHhHhcceeEecCC
Q 036519 246 VNWCPQ-LGVLAHEATGCFLTHCGWNSTIEALRLGVPMLAMPL----WTDQSTNSKYVMDVWKMGLKVPAD 311 (365)
Q Consensus 246 ~~~~p~-~~~L~~~~~~~~I~hgG~gs~~eal~~GvP~v~~P~----~~DQ~~nA~~v~~~~G~G~~~~~~ 311 (365)
.+|-|. .+..+.+++ ||+|+|+||++|.|..|+|.|+++- ...|-.-|..+++. |.=..-...
T Consensus 68 y~f~psl~e~I~~Adl--VIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~e-gyL~~C~ps 135 (170)
T KOG3349|consen 68 YDFSPSLTEDIRSADL--VISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAEE-GYLYYCTPS 135 (170)
T ss_pred EecCccHHHHHhhccE--EEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHhc-CcEEEeecc
Confidence 356665 557788999 9999999999999999999999994 56899999999999 776555543
No 91
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=97.97 E-value=0.00047 Score=64.08 Aligned_cols=108 Identities=21% Similarity=0.190 Sum_probs=72.6
Q ss_pred CCCCeEEeec--chh---hhhcccccccccccC---C-hhhHHHHHHcCCCeeeccccCchhhHHHHHHhHhcceeEecC
Q 036519 240 TQKGLVVNWC--PQL---GVLAHEATGCFLTHC---G-WNSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVWKMGLKVPA 310 (365)
Q Consensus 240 ~~~~~~~~~~--p~~---~~L~~~~~~~~I~hg---G-~gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~~~~ 310 (365)
.+++.+..+. +.. .+++.+|+ ++.-. | ..++.||+++|+|+|+.... .....+++. ..|...+
T Consensus 251 ~~~v~~~~~~~~~~~~~~~~~~~ad~--~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~----~~~~~i~~~-~~g~~~~- 322 (372)
T cd03792 251 DPDIHVLTLPPVSDLEVNALQRASTV--VLQKSIREGFGLTVTEALWKGKPVIAGPVG----GIPLQIEDG-ETGFLVD- 322 (372)
T ss_pred CCCeEEEecCCCCHHHHHHHHHhCeE--EEeCCCccCCCHHHHHHHHcCCCEEEcCCC----CchhhcccC-CceEEeC-
Confidence 3566677765 332 47888998 77543 2 45999999999999886542 334456666 6676544
Q ss_pred CCCCcccHHHHHHHHHHHhcCHHHH----HHHHHHHHcCCCcHHHHHHHHHHHHh
Q 036519 311 DEKGIVRREAIAHCIGEILEGDKWR----NFAKEAVAKGGSSDKNIDDFVANLIS 361 (365)
Q Consensus 311 ~~~~~~~~~~l~~~i~~ll~~~~~~----~~a~~~~~~~g~s~~~~~~~~~~i~~ 361 (365)
+.+.+..++.++++|++.+ +++++.+.+.=+-...++++++.+++
T Consensus 323 ------~~~~~a~~i~~ll~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~~~~ 371 (372)
T cd03792 323 ------TVEEAAVRILYLLRDPELRRKMGANAREHVRENFLITRHLKDYLYLISK 371 (372)
T ss_pred ------CcHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHh
Confidence 3467788999999887544 44455454555667777777777654
No 92
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=97.92 E-value=0.00069 Score=62.12 Aligned_cols=88 Identities=18% Similarity=0.201 Sum_probs=61.2
Q ss_pred cCCCCeEEeecchh---hhhccccccccccc----CChhhHHHHHHcCCCeeeccccCchhhHHHHHHhHhcceeEecCC
Q 036519 239 TTQKGLVVNWCPQL---GVLAHEATGCFLTH----CGWNSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVWKMGLKVPAD 311 (365)
Q Consensus 239 ~~~~~~~~~~~p~~---~~L~~~~~~~~I~h----gG~gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~~~~~ 311 (365)
..+++.+.+|+|+. .+|..+|+ +|.- |..+++.||+++|+|+|+-... .....+.+ .|..+..
T Consensus 251 ~~~~v~~~g~~~~~~~~~~~~~~d~--~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~----~~~e~~~~---~~~~~~~- 320 (365)
T cd03809 251 LGDRVRFLGYVSDEELAALYRGARA--FVFPSLYEGFGLPVLEAMACGTPVIASNIS----SLPEVAGD---AALYFDP- 320 (365)
T ss_pred CCCeEEECCCCChhHHHHHHhhhhh--hcccchhccCCCCHHHHhcCCCcEEecCCC----CccceecC---ceeeeCC-
Confidence 45778888999876 47889998 6533 3456899999999999986542 12222322 3445553
Q ss_pred CCCcccHHHHHHHHHHHhcCHHHHHHHHH
Q 036519 312 EKGIVRREAIAHCIGEILEGDKWRNFAKE 340 (365)
Q Consensus 312 ~~~~~~~~~l~~~i~~ll~~~~~~~~a~~ 340 (365)
-+.+++.+++.++++|++.+..+.+
T Consensus 321 ----~~~~~~~~~i~~l~~~~~~~~~~~~ 345 (365)
T cd03809 321 ----LDPEALAAAIERLLEDPALREELRE 345 (365)
T ss_pred ----CCHHHHHHHHHHHhcCHHHHHHHHH
Confidence 3789999999999998865544433
No 93
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=97.83 E-value=0.00014 Score=69.80 Aligned_cols=107 Identities=14% Similarity=0.245 Sum_probs=69.4
Q ss_pred hhhhcccccccccccCChhhHHHHHHcCCCeeec-cccCchhhHHHHHHhH---------hcceeEecCC--C-CCcccH
Q 036519 252 LGVLAHEATGCFLTHCGWNSTIEALRLGVPMLAM-PLWTDQSTNSKYVMDV---------WKMGLKVPAD--E-KGIVRR 318 (365)
Q Consensus 252 ~~~L~~~~~~~~I~hgG~gs~~eal~~GvP~v~~-P~~~DQ~~nA~~v~~~---------~G~G~~~~~~--~-~~~~~~ 318 (365)
.+++..||+ .+.-+|.. +.|+...|+|||++ -...=.+.-|+++.+. .=+|..+-++ + -.+.|+
T Consensus 483 ~~~m~aaD~--aLaaSGTa-TLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ~~~tp 559 (608)
T PRK01021 483 YELMRECDC--ALAKCGTI-VLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGKKDFQP 559 (608)
T ss_pred HHHHHhcCe--eeecCCHH-HHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcchhhcCCcccCCH
Confidence 478999999 88888854 57999999999885 2222233445665550 0012222222 2 237899
Q ss_pred HHHHHHHHHHhcCHHHHH----HHHHHHHcCCCcHHHHHHHHHHHHhc
Q 036519 319 EAIAHCIGEILEGDKWRN----FAKEAVAKGGSSDKNIDDFVANLISS 362 (365)
Q Consensus 319 ~~l~~~i~~ll~~~~~~~----~a~~~~~~~g~s~~~~~~~~~~i~~~ 362 (365)
+.|.+++ ++|.|++.++ ..+++.+..|+...+.+|....|.+.
T Consensus 560 e~La~~l-~lL~d~~~r~~~~~~l~~lr~~Lg~~~~~~~~~~~~~~~~ 606 (608)
T PRK01021 560 EEVAAAL-DILKTSQSKEKQKDACRDLYQAMNESASTMKECLSLIFET 606 (608)
T ss_pred HHHHHHH-HHhcCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhc
Confidence 9999997 8888875444 44455666677667777777777653
No 94
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=97.82 E-value=0.00012 Score=67.72 Aligned_cols=81 Identities=15% Similarity=0.114 Sum_probs=54.4
Q ss_pred CCCeEEe---ecchhhhhcccccccccccCChhhHHHHHHcCCCeeeccccCchhhHHHHHHhHhcceeEecCCCCCccc
Q 036519 241 QKGLVVN---WCPQLGVLAHEATGCFLTHCGWNSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVWKMGLKVPADEKGIVR 317 (365)
Q Consensus 241 ~~~~~~~---~~p~~~~L~~~~~~~~I~hgG~gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~ 317 (365)
+++.+.+ +.....++++|++ +|+-++.|. .||.+.|+|+|.+- +.+ ...+. |..+..- ..+
T Consensus 262 ~~v~l~~~l~~~~~l~Ll~~a~~--vitdSSggi-~EA~~lg~Pvv~l~---~R~----e~~~~-g~nvl~v-----g~~ 325 (365)
T TIGR03568 262 PNFRLFKSLGQERYLSLLKNADA--VIGNSSSGI-IEAPSFGVPTINIG---TRQ----KGRLR-ADSVIDV-----DPD 325 (365)
T ss_pred CCEEEECCCChHHHHHHHHhCCE--EEEcChhHH-HhhhhcCCCEEeec---CCc----hhhhh-cCeEEEe-----CCC
Confidence 5677775 4556679999999 998886655 99999999999874 211 11133 3333322 247
Q ss_pred HHHHHHHHHHHhcCHHHHHHH
Q 036519 318 REAIAHCIGEILEGDKWRNFA 338 (365)
Q Consensus 318 ~~~l~~~i~~ll~~~~~~~~a 338 (365)
+++|.+++.+++ +++++++.
T Consensus 326 ~~~I~~a~~~~~-~~~~~~~~ 345 (365)
T TIGR03568 326 KEEIVKAIEKLL-DPAFKKSL 345 (365)
T ss_pred HHHHHHHHHHHh-ChHHHHHH
Confidence 899999999965 54554443
No 95
>PRK00654 glgA glycogen synthase; Provisional
Probab=97.75 E-value=0.001 Score=63.81 Aligned_cols=115 Identities=19% Similarity=0.195 Sum_probs=70.3
Q ss_pred cCCCCeE-Eeecchh--hhhccccccccccc---CCh-hhHHHHHHcCCCeeeccccC--chhhHHHHHHhHhcceeEec
Q 036519 239 TTQKGLV-VNWCPQL--GVLAHEATGCFLTH---CGW-NSTIEALRLGVPMLAMPLWT--DQSTNSKYVMDVWKMGLKVP 309 (365)
Q Consensus 239 ~~~~~~~-~~~~p~~--~~L~~~~~~~~I~h---gG~-gs~~eal~~GvP~v~~P~~~--DQ~~nA~~v~~~~G~G~~~~ 309 (365)
.+.++.+ ..|-... .+++.+|+ +|.- -|. .+.+||+++|+|.|+....+ |.-.+...-.+. +-|..++
T Consensus 335 ~~~~v~~~~g~~~~~~~~~~~~aDv--~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~-~~G~lv~ 411 (466)
T PRK00654 335 YPGKVGVQIGYDEALAHRIYAGADM--FLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGE-ATGFVFD 411 (466)
T ss_pred CCCcEEEEEeCCHHHHHHHHhhCCE--EEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCC-CceEEeC
Confidence 4455543 3553222 47899999 7753 344 48899999999998865422 211111011344 6688887
Q ss_pred CCCCCcccHHHHHHHHHHHhc---CH-HHHHHHHHHHHcCCCcHHHHHHHHHHHHh
Q 036519 310 ADEKGIVRREAIAHCIGEILE---GD-KWRNFAKEAVAKGGSSDKNIDDFVANLIS 361 (365)
Q Consensus 310 ~~~~~~~~~~~l~~~i~~ll~---~~-~~~~~a~~~~~~~g~s~~~~~~~~~~i~~ 361 (365)
. -++++|.+++.++++ ++ .+++..++..++.-+-++.+++.++..++
T Consensus 412 ~-----~d~~~la~~i~~~l~~~~~~~~~~~~~~~~~~~~fsw~~~a~~~~~lY~~ 462 (466)
T PRK00654 412 D-----FNAEDLLRALRRALELYRQPPLWRALQRQAMAQDFSWDKSAEEYLELYRR 462 (466)
T ss_pred C-----CCHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCChHHHHHHHHHHHHH
Confidence 4 478999999999875 44 34444454444555566667776665543
No 96
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=97.73 E-value=0.00021 Score=67.21 Aligned_cols=111 Identities=18% Similarity=0.182 Sum_probs=83.4
Q ss_pred cCCCCeEEeecchhh---hhccccccccccc---------CCh-hhHHHHHHcCCCeeeccccCchhhHHHHHHhHhcce
Q 036519 239 TTQKGLVVNWCPQLG---VLAHEATGCFLTH---------CGW-NSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVWKMG 305 (365)
Q Consensus 239 ~~~~~~~~~~~p~~~---~L~~~~~~~~I~h---------gG~-gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~~G~G 305 (365)
..+++.+.+|+|+.+ ++..+|+ +|.- -|. +++.||+++|+|+|+.... .....+++. ..|
T Consensus 277 l~~~V~~~G~~~~~el~~~l~~aDv--~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~----g~~E~v~~~-~~G 349 (406)
T PRK15427 277 LEDVVEMPGFKPSHEVKAMLDDADV--FLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHS----GIPELVEAD-KSG 349 (406)
T ss_pred CCCeEEEeCCCCHHHHHHHHHhCCE--EEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCC----CchhhhcCC-Cce
Confidence 346788889998764 7899999 7652 244 6789999999999987543 345566666 778
Q ss_pred eEecCCCCCcccHHHHHHHHHHHhc-CHH----HHHHHHHHHHcCCCcHHHHHHHHHHHHh
Q 036519 306 LKVPADEKGIVRREAIAHCIGEILE-GDK----WRNFAKEAVAKGGSSDKNIDDFVANLIS 361 (365)
Q Consensus 306 ~~~~~~~~~~~~~~~l~~~i~~ll~-~~~----~~~~a~~~~~~~g~s~~~~~~~~~~i~~ 361 (365)
..++. -+++++.++|.++++ |++ +.+++++.+++.=+.+...+++.+.+++
T Consensus 350 ~lv~~-----~d~~~la~ai~~l~~~d~~~~~~~~~~ar~~v~~~f~~~~~~~~l~~~~~~ 405 (406)
T PRK15427 350 WLVPE-----NDAQALAQRLAAFSQLDTDELAPVVKRAREKVETDFNQQVINRELASLLQA 405 (406)
T ss_pred EEeCC-----CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 88874 479999999999998 874 4556666666666677788888877764
No 97
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.69 E-value=0.00013 Score=59.66 Aligned_cols=92 Identities=18% Similarity=0.226 Sum_probs=70.4
Q ss_pred cCCCCeEEeecch---hhhhccccccccccc----CChhhHHHHHHcCCCeeeccccCchhhHHHHHHhHhcceeEecCC
Q 036519 239 TTQKGLVVNWCPQ---LGVLAHEATGCFLTH----CGWNSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVWKMGLKVPAD 311 (365)
Q Consensus 239 ~~~~~~~~~~~p~---~~~L~~~~~~~~I~h----gG~gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~~~~~ 311 (365)
...++.+.+++++ ..++..+++ +|+. |+.+++.||+++|+|+|+. +...+...+... +.|..++
T Consensus 71 ~~~~i~~~~~~~~~~l~~~~~~~di--~v~~s~~e~~~~~~~Ea~~~g~pvI~~----~~~~~~e~~~~~-~~g~~~~-- 141 (172)
T PF00534_consen 71 LKENIIFLGYVPDDELDELYKSSDI--FVSPSRNEGFGLSLLEAMACGCPVIAS----DIGGNNEIINDG-VNGFLFD-- 141 (172)
T ss_dssp CGTTEEEEESHSHHHHHHHHHHTSE--EEE-BSSBSS-HHHHHHHHTT-EEEEE----SSTHHHHHSGTT-TSEEEES--
T ss_pred cccccccccccccccccccccccee--ccccccccccccccccccccccceeec----cccCCceeeccc-cceEEeC--
Confidence 4467778888873 358999999 8877 6778999999999999875 456667777777 7798888
Q ss_pred CCCcccHHHHHHHHHHHhcCHHHHHHHHHHH
Q 036519 312 EKGIVRREAIAHCIGEILEGDKWRNFAKEAV 342 (365)
Q Consensus 312 ~~~~~~~~~l~~~i~~ll~~~~~~~~a~~~~ 342 (365)
..+.+++.++|.++++|++.++.+.+.+
T Consensus 142 ---~~~~~~l~~~i~~~l~~~~~~~~l~~~~ 169 (172)
T PF00534_consen 142 ---PNDIEELADAIEKLLNDPELRQKLGKNA 169 (172)
T ss_dssp ---TTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCCHHHHHHHHHHHHCCHHHHHHHHHHh
Confidence 4489999999999999886666665543
No 98
>PLN02316 synthase/transferase
Probab=97.68 E-value=0.0075 Score=62.18 Aligned_cols=113 Identities=9% Similarity=-0.000 Sum_probs=70.1
Q ss_pred CCCCeEEeecchh---hhhccccccccccc----CChhhHHHHHHcCCCeeeccccC--chh-------hHHHHHHhHhc
Q 036519 240 TQKGLVVNWCPQL---GVLAHEATGCFLTH----CGWNSTIEALRLGVPMLAMPLWT--DQS-------TNSKYVMDVWK 303 (365)
Q Consensus 240 ~~~~~~~~~~p~~---~~L~~~~~~~~I~h----gG~gs~~eal~~GvP~v~~P~~~--DQ~-------~nA~~v~~~~G 303 (365)
++++.+....+.. .+++.+|+ |+.- +=..+.+||+++|+|.|+....+ |.- .++...... +
T Consensus 899 ~~rV~f~g~~de~lah~iyaaADi--flmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~-~ 975 (1036)
T PLN02316 899 HDRARLCLTYDEPLSHLIYAGADF--ILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLE-P 975 (1036)
T ss_pred CCeEEEEecCCHHHHHHHHHhCcE--EEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccC-C
Confidence 3456555444443 48899998 8853 22468899999999988765422 211 111111112 4
Q ss_pred ceeEecCCCCCcccHHHHHHHHHHHhcCH-----HHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 036519 304 MGLKVPADEKGIVRREAIAHCIGEILEGD-----KWRNFAKEAVAKGGSSDKNIDDFVANLI 360 (365)
Q Consensus 304 ~G~~~~~~~~~~~~~~~l~~~i~~ll~~~-----~~~~~a~~~~~~~g~s~~~~~~~~~~i~ 360 (365)
-|...+ ..+++.|..+|.+++.+. .+++++++.++..-|-++.+++.++.-+
T Consensus 976 tGflf~-----~~d~~aLa~AL~raL~~~~~~~~~~~~~~r~~m~~dFSW~~~A~~Y~~LY~ 1032 (1036)
T PLN02316 976 NGFSFD-----GADAAGVDYALNRAISAWYDGRDWFNSLCKRVMEQDWSWNRPALDYMELYH 1032 (1036)
T ss_pred ceEEeC-----CCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence 577777 457999999999998641 3566777766665555566666655544
No 99
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=97.65 E-value=0.0002 Score=66.12 Aligned_cols=105 Identities=19% Similarity=0.168 Sum_probs=75.2
Q ss_pred cCCCCeEEeecchh---hhhccccccccccc----------CChhhHHHHHHcCCCeeeccccCchhhHHHHHHhHhcce
Q 036519 239 TTQKGLVVNWCPQL---GVLAHEATGCFLTH----------CGWNSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVWKMG 305 (365)
Q Consensus 239 ~~~~~~~~~~~p~~---~~L~~~~~~~~I~h----------gG~gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~~G~G 305 (365)
..+++.+.+++++. .++..+|+ +|.- |-.+++.||+++|+|+|+-+.. .++..+.+. +.|
T Consensus 243 ~~~~v~~~g~~~~~~l~~~~~~ad~--~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~----~~~e~i~~~-~~g 315 (367)
T cd05844 243 LGGRVTFLGAQPHAEVRELMRRARI--FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHG----GIPEAVEDG-ETG 315 (367)
T ss_pred CCCeEEECCCCCHHHHHHHHHhCCE--EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCC----CchhheecC-Cee
Confidence 35677788888765 46899999 6642 3358999999999999987653 466777777 889
Q ss_pred eEecCCCCCcccHHHHHHHHHHHhcCHH----HHHHHHHHHHcCCCcHHHHHHH
Q 036519 306 LKVPADEKGIVRREAIAHCIGEILEGDK----WRNFAKEAVAKGGSSDKNIDDF 355 (365)
Q Consensus 306 ~~~~~~~~~~~~~~~l~~~i~~ll~~~~----~~~~a~~~~~~~g~s~~~~~~~ 355 (365)
..++. -+++++.+++.++++|++ +++++++.+.+.-+.+...+++
T Consensus 316 ~~~~~-----~d~~~l~~~i~~l~~~~~~~~~~~~~a~~~~~~~~s~~~~~~~l 364 (367)
T cd05844 316 LLVPE-----GDVAALAAALGRLLADPDLRARMGAAGRRRVEERFDLRRQTAKL 364 (367)
T ss_pred EEECC-----CCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 88873 478999999999999875 3444555444444444444444
No 100
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=97.65 E-value=0.00039 Score=64.82 Aligned_cols=112 Identities=15% Similarity=0.166 Sum_probs=79.4
Q ss_pred cCCCCeEEeecchh---hhhccccccccccc----CCh-hhHHHHHHcCCCeeeccccCchhhHHHHHHhHhcceeEecC
Q 036519 239 TTQKGLVVNWCPQL---GVLAHEATGCFLTH----CGW-NSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVWKMGLKVPA 310 (365)
Q Consensus 239 ~~~~~~~~~~~p~~---~~L~~~~~~~~I~h----gG~-gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~~~~ 310 (365)
.+.++.+.+++++. .+|+.+|+ +|.. .|. .++.||+++|+|+|+.... .+...+++. ..|..+..
T Consensus 255 l~~~v~~~G~~~~~~l~~~~~~aDv--~v~pS~~~E~f~~~~lEAma~G~PVI~s~~g----g~~Eiv~~~-~~G~~l~~ 327 (380)
T PRK15484 255 IGDRCIMLGGQPPEKMHNYYPLADL--VVVPSQVEEAFCMVAVEAMAAGKPVLASTKG----GITEFVLEG-ITGYHLAE 327 (380)
T ss_pred cCCcEEEeCCCCHHHHHHHHHhCCE--EEeCCCCccccccHHHHHHHcCCCEEEeCCC----CcHhhcccC-CceEEEeC
Confidence 45677788888755 46999999 7653 343 6788999999999987652 345566666 67875532
Q ss_pred CCCCcccHHHHHHHHHHHhcCHHH---HHHHHHHHHcCCCcHHHHHHHHHHHHh
Q 036519 311 DEKGIVRREAIAHCIGEILEGDKW---RNFAKEAVAKGGSSDKNIDDFVANLIS 361 (365)
Q Consensus 311 ~~~~~~~~~~l~~~i~~ll~~~~~---~~~a~~~~~~~g~s~~~~~~~~~~i~~ 361 (365)
..+++++.++|.++++|++. .+++++.+.+.=+-+..++++.+.+++
T Consensus 328 ----~~d~~~la~~I~~ll~d~~~~~~~~~ar~~~~~~fsw~~~a~~~~~~l~~ 377 (380)
T PRK15484 328 ----PMTSDSIISDINRTLADPELTQIAEQAKDFVFSKYSWEGVTQRFEEQIHN 377 (380)
T ss_pred ----CCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34799999999999999854 444444445555667777777777654
No 101
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.57 E-value=0.00033 Score=65.97 Aligned_cols=108 Identities=16% Similarity=0.234 Sum_probs=76.7
Q ss_pred CCCCeEEeecchhh---hhcccccccccccCC----hhhHHHHHHcCCCeeeccccCchhhHHHHHHhHhcceeEecCCC
Q 036519 240 TQKGLVVNWCPQLG---VLAHEATGCFLTHCG----WNSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVWKMGLKVPADE 312 (365)
Q Consensus 240 ~~~~~~~~~~p~~~---~L~~~~~~~~I~hgG----~gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~ 312 (365)
.+++...+|+++.+ ++..+++.++|...- .++++||+++|+|+|+-.. ......+.+. +.|..+...
T Consensus 288 ~~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~v----gg~~e~i~~~-~~G~l~~~~- 361 (407)
T cd04946 288 NISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNV----GGTPEIVDNG-GNGLLLSKD- 361 (407)
T ss_pred CceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCC----CCcHHHhcCC-CcEEEeCCC-
Confidence 35677889999764 455444333765543 5789999999999988543 3456677666 688877742
Q ss_pred CCcccHHHHHHHHHHHhcCH----HHHHHHHHHHHcCCCcHHHHHHHH
Q 036519 313 KGIVRREAIAHCIGEILEGD----KWRNFAKEAVAKGGSSDKNIDDFV 356 (365)
Q Consensus 313 ~~~~~~~~l~~~i~~ll~~~----~~~~~a~~~~~~~g~s~~~~~~~~ 356 (365)
.+++++.++|.++++|+ ++++++++..++.=+.+...++|+
T Consensus 362 ---~~~~~la~~I~~ll~~~~~~~~m~~~ar~~~~~~f~~~~~~~~~~ 406 (407)
T cd04946 362 ---PTPNELVSSLSKFIDNEEEYQTMREKAREKWEENFNASKNYREFA 406 (407)
T ss_pred ---CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCHHHhHHHhc
Confidence 47999999999999887 456677776666666666666654
No 102
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=97.52 E-value=0.024 Score=54.60 Aligned_cols=112 Identities=15% Similarity=0.152 Sum_probs=67.7
Q ss_pred CCCCeEEeecchh---hhhccccccccccc----CChhhHHHHHHcCCCeeeccccC--chhhHHHHHHhHhcceeEecC
Q 036519 240 TQKGLVVNWCPQL---GVLAHEATGCFLTH----CGWNSTIEALRLGVPMLAMPLWT--DQSTNSKYVMDVWKMGLKVPA 310 (365)
Q Consensus 240 ~~~~~~~~~~p~~---~~L~~~~~~~~I~h----gG~gs~~eal~~GvP~v~~P~~~--DQ~~nA~~v~~~~G~G~~~~~ 310 (365)
++++.+....++. .++..+|+ ++.- +-..+.+||+++|+|.|+....+ |.-.+.....+. |.|..++.
T Consensus 350 ~~~v~~~~~~~~~~~~~~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~-~~G~~~~~ 426 (476)
T cd03791 350 PGRVAVLIGYDEALAHLIYAGADF--FLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTGE-GTGFVFEG 426 (476)
T ss_pred CCcEEEEEeCCHHHHHHHHHhCCE--EECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCCC-CCeEEeCC
Confidence 4566554433332 37888998 7643 22247899999999998765432 211111111134 58888884
Q ss_pred CCCCcccHHHHHHHHHHHhc---CH-HHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 036519 311 DEKGIVRREAIAHCIGEILE---GD-KWRNFAKEAVAKGGSSDKNIDDFVANL 359 (365)
Q Consensus 311 ~~~~~~~~~~l~~~i~~ll~---~~-~~~~~a~~~~~~~g~s~~~~~~~~~~i 359 (365)
-+++++.+++.++++ ++ .+.+++++..+..=+-+..+++.++..
T Consensus 427 -----~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~fsw~~~a~~~~~~y 474 (476)
T cd03791 427 -----YNADALLAALRRALALYRDPEAWRKLQRNAMAQDFSWDRSAKEYLELY 474 (476)
T ss_pred -----CCHHHHHHHHHHHHHHHcCHHHHHHHHHHHhccCCChHHHHHHHHHHH
Confidence 479999999999884 43 455555555554444555566665543
No 103
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.49 E-value=0.00099 Score=56.58 Aligned_cols=49 Identities=16% Similarity=0.158 Sum_probs=37.1
Q ss_pred cCCCCeEEeecchh---h-hhcccccccccccCC----hhhHHHHHHcCCCeeeccccC
Q 036519 239 TTQKGLVVNWCPQL---G-VLAHEATGCFLTHCG----WNSTIEALRLGVPMLAMPLWT 289 (365)
Q Consensus 239 ~~~~~~~~~~~p~~---~-~L~~~~~~~~I~hgG----~gs~~eal~~GvP~v~~P~~~ 289 (365)
...|+.+.++++.. . ++..||+ +++-.. .+++.||+++|+|+|+.+..+
T Consensus 159 ~~~~v~~~~~~~~~~~~~~~~~~~di--~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~ 215 (229)
T cd01635 159 LLDRVIFLGGLDPEELLALLLAAADV--FVLPSLREGFGLVVLEAMACGLPVIATDVGG 215 (229)
T ss_pred CcccEEEeCCCCcHHHHHHHhhcCCE--EEecccccCcChHHHHHHhCCCCEEEcCCCC
Confidence 45678888886322 2 4444888 888776 799999999999999988644
No 104
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=97.39 E-value=0.0014 Score=60.32 Aligned_cols=83 Identities=28% Similarity=0.261 Sum_probs=54.8
Q ss_pred hhhhhcccccccccccCChhhHHHHHHcCCCeeecc-ccCchhhHHHHHHhHhcc--------eeEecCC-CCCcccHHH
Q 036519 251 QLGVLAHEATGCFLTHCGWNSTIEALRLGVPMLAMP-LWTDQSTNSKYVMDVWKM--------GLKVPAD-EKGIVRREA 320 (365)
Q Consensus 251 ~~~~L~~~~~~~~I~hgG~gs~~eal~~GvP~v~~P-~~~DQ~~nA~~v~~~~G~--------G~~~~~~-~~~~~~~~~ 320 (365)
..+++..||+ .+.-.|. .+.|+..+|+|||++= ...=.+..|+++.+. .. |..+-++ --++.|++.
T Consensus 254 ~~~~m~~ad~--al~~SGT-aTLE~Al~g~P~Vv~Yk~~~lt~~iak~lvk~-~~isL~Niia~~~v~PEliQ~~~~~~~ 329 (373)
T PF02684_consen 254 SYDAMAAADA--ALAASGT-ATLEAALLGVPMVVAYKVSPLTYFIAKRLVKV-KYISLPNIIAGREVVPELIQEDATPEN 329 (373)
T ss_pred hHHHHHhCcc--hhhcCCH-HHHHHHHhCCCEEEEEcCcHHHHHHHHHhhcC-CEeechhhhcCCCcchhhhcccCCHHH
Confidence 4458999999 8888774 5579999999998762 222344456666554 32 1111111 012789999
Q ss_pred HHHHHHHHhcCHHHHHH
Q 036519 321 IAHCIGEILEGDKWRNF 337 (365)
Q Consensus 321 l~~~i~~ll~~~~~~~~ 337 (365)
|.+++.++++|++.++.
T Consensus 330 i~~~~~~ll~~~~~~~~ 346 (373)
T PF02684_consen 330 IAAELLELLENPEKRKK 346 (373)
T ss_pred HHHHHHHHhcCHHHHHH
Confidence 99999999998754433
No 105
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=97.30 E-value=0.032 Score=52.83 Aligned_cols=81 Identities=20% Similarity=0.031 Sum_probs=55.7
Q ss_pred cCCCCeEEeecchh---hhhccccccccccc----CChhhHHHHHHcCCCeeeccccCchhhHHHHHH---hHhcceeEe
Q 036519 239 TTQKGLVVNWCPQL---GVLAHEATGCFLTH----CGWNSTIEALRLGVPMLAMPLWTDQSTNSKYVM---DVWKMGLKV 308 (365)
Q Consensus 239 ~~~~~~~~~~~p~~---~~L~~~~~~~~I~h----gG~gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~---~~~G~G~~~ 308 (365)
+.+++...+++|+. .+|..+++ +|+- +=.-++.||+++|+|.|+.-..+.- ...++ +. +.|...
T Consensus 303 l~~~V~f~g~v~~~~l~~~l~~adv--~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp~---~~iv~~~~~g-~~G~l~ 376 (419)
T cd03806 303 LEDKVEFVVNAPFEELLEELSTASI--GLHTMWNEHFGIGVVEYMAAGLIPLAHASGGPL---LDIVVPWDGG-PTGFLA 376 (419)
T ss_pred CCCeEEEecCCCHHHHHHHHHhCeE--EEECCccCCcccHHHHHHHcCCcEEEEcCCCCc---hheeeccCCC-CceEEe
Confidence 34678888888866 48899998 6642 2235789999999999876432211 11232 34 566553
Q ss_pred cCCCCCcccHHHHHHHHHHHhcCH
Q 036519 309 PADEKGIVRREAIAHCIGEILEGD 332 (365)
Q Consensus 309 ~~~~~~~~~~~~l~~~i~~ll~~~ 332 (365)
. +++++++++.++++++
T Consensus 377 ------~-d~~~la~ai~~ll~~~ 393 (419)
T cd03806 377 ------S-TAEEYAEAIEKILSLS 393 (419)
T ss_pred ------C-CHHHHHHHHHHHHhCC
Confidence 2 6899999999999864
No 106
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=97.18 E-value=0.00048 Score=63.41 Aligned_cols=124 Identities=12% Similarity=0.097 Sum_probs=82.2
Q ss_pred hhHhHhhHhhhhhhhhCchhhCCCCcccccccCCCCeEEeecchh---hhhcccccccccccCCh-hhHHHHHHcCCCee
Q 036519 208 DWILCNTFYELEKEVIKESEQSKLPENFSDETTQKGLVVNWCPQL---GVLAHEATGCFLTHCGW-NSTIEALRLGVPML 283 (365)
Q Consensus 208 ~~~~~~~~~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~p~~---~~L~~~~~~~~I~hgG~-gs~~eal~~GvP~v 283 (365)
...++.++..++.+++. .+.+...+.+.+...+|+.+.+++|+. .++..+|+-++-+.-|. .++.||+++|+|+|
T Consensus 210 ~~~li~a~~~~~~~l~i-vG~g~~~~~l~~~~~~~V~~~g~~~~~~~~~~~~~ad~~v~ps~e~~g~~~~Eama~G~Pvi 288 (351)
T cd03804 210 IDLAIEAFNKLGKRLVV-IGDGPELDRLRAKAGPNVTFLGRVSDEELRDLYARARAFLFPAEEDFGIVPVEAMASGTPVI 288 (351)
T ss_pred hHHHHHHHHHCCCcEEE-EECChhHHHHHhhcCCCEEEecCCCHHHHHHHHHhCCEEEECCcCCCCchHHHHHHcCCCEE
Confidence 35567777776633322 222222233333456889999999975 47889998332233343 45789999999999
Q ss_pred eccccCchhhHHHHHHhHhcceeEecCCCCCcccHHHHHHHHHHHhcCH-HHHHHHHHHH
Q 036519 284 AMPLWTDQSTNSKYVMDVWKMGLKVPADEKGIVRREAIAHCIGEILEGD-KWRNFAKEAV 342 (365)
Q Consensus 284 ~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~-~~~~~a~~~~ 342 (365)
+....+ ....+++. +.|..++. -++++++++|.++++|+ ..++++++.+
T Consensus 289 ~~~~~~----~~e~i~~~-~~G~~~~~-----~~~~~la~~i~~l~~~~~~~~~~~~~~~ 338 (351)
T cd03804 289 AYGKGG----ALETVIDG-VTGILFEE-----QTVESLAAAVERFEKNEDFDPQAIRAHA 338 (351)
T ss_pred EeCCCC----CcceeeCC-CCEEEeCC-----CCHHHHHHHHHHHHhCcccCHHHHHHHH
Confidence 976533 34456677 78888874 47899999999999887 4555555443
No 107
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=97.14 E-value=0.0079 Score=54.46 Aligned_cols=104 Identities=16% Similarity=0.157 Sum_probs=65.3
Q ss_pred hhhcccccccccccCChhhHHHHHHcCCCeeeccccCc--hhhHHHHHHhHhcce-------eEecCC-CCCcccHHHHH
Q 036519 253 GVLAHEATGCFLTHCGWNSTIEALRLGVPMLAMPLWTD--QSTNSKYVMDVWKMG-------LKVPAD-EKGIVRREAIA 322 (365)
Q Consensus 253 ~~L~~~~~~~~I~hgG~gs~~eal~~GvP~v~~P~~~D--Q~~nA~~v~~~~G~G-------~~~~~~-~~~~~~~~~l~ 322 (365)
..+..||+ .+.-+|.. +.|+..+|+|||+. +..+ -+.-|++..+.|=++ ..+-++ -....+++.|.
T Consensus 260 ~a~~~aD~--al~aSGT~-tLE~aL~g~P~Vv~-Yk~~~it~~iak~lvk~~yisLpNIi~~~~ivPEliq~~~~pe~la 335 (381)
T COG0763 260 KAFAAADA--ALAASGTA-TLEAALAGTPMVVA-YKVKPITYFIAKRLVKLPYVSLPNILAGREIVPELIQEDCTPENLA 335 (381)
T ss_pred HHHHHhhH--HHHhccHH-HHHHHHhCCCEEEE-EeccHHHHHHHHHhccCCcccchHHhcCCccchHHHhhhcCHHHHH
Confidence 37889999 88888855 47899999999876 3333 233455555542221 111111 01268899999
Q ss_pred HHHHHHhcCH----HHHHHHHHHHHc---CCCcHHHHHHHHHHHH
Q 036519 323 HCIGEILEGD----KWRNFAKEAVAK---GGSSDKNIDDFVANLI 360 (365)
Q Consensus 323 ~~i~~ll~~~----~~~~~a~~~~~~---~g~s~~~~~~~~~~i~ 360 (365)
+++..++.|+ .+++..+++.+. +++++.+++.+++++.
T Consensus 336 ~~l~~ll~~~~~~~~~~~~~~~l~~~l~~~~~~e~aA~~vl~~~~ 380 (381)
T COG0763 336 RALEELLLNGDRREALKEKFRELHQYLREDPASEIAAQAVLELLL 380 (381)
T ss_pred HHHHHHhcChHhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhc
Confidence 9999999887 344444444332 3367777777776653
No 108
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.08 E-value=0.046 Score=48.04 Aligned_cols=103 Identities=17% Similarity=0.221 Sum_probs=73.1
Q ss_pred CCCChHHHHHHHHHHHhCCCeEEEEeCccc--cccccCCCCCCCCeeEEEcCCCCCCCCCCCcCCHH-HHHHHHHHHhHH
Q 036519 24 AQGHMNPLLQFSKRLEHNGIKVTLVTTYFI--SKSLHRDPSSSISIPLETISDGYDEGRSAQAETDQ-AYVDRFWQIGVQ 100 (365)
Q Consensus 24 ~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~--~~~v~~~~~~~~gi~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 100 (365)
-.-|+.=+-.|-.+|.++||+|.+-+-+.. .+.+.. -|+.+..+.. .....+. .++....+..
T Consensus 9 n~~hvhfFk~lI~elekkG~ev~iT~rd~~~v~~LLd~-----ygf~~~~Igk-------~g~~tl~~Kl~~~~eR~~-- 74 (346)
T COG1817 9 NPPHVHFFKNLIWELEKKGHEVLITCRDFGVVTELLDL-----YGFPYKSIGK-------HGGVTLKEKLLESAERVY-- 74 (346)
T ss_pred CcchhhHHHHHHHHHHhCCeEEEEEEeecCcHHHHHHH-----hCCCeEeecc-------cCCccHHHHHHHHHHHHH--
Confidence 344666677889999999999988775433 344443 6778777742 2223444 3444444443
Q ss_pred HHHHHHHhcCCCcEEEEcCCCccHHHHHHHhCCceEEEeccc
Q 036519 101 TLTELVERMNDVDCIVYDSFLPWALDVAKKFGLTGAAFLTQS 142 (365)
Q Consensus 101 ~l~~ll~~~~~pD~vv~D~~~~~a~~~A~~~giP~v~~~~~~ 142 (365)
.+.++..+. +||+.+. -..+.+..+|--+|+|.+.|.-..
T Consensus 75 ~L~ki~~~~-kpdv~i~-~~s~~l~rvafgLg~psIi~~D~e 114 (346)
T COG1817 75 KLSKIIAEF-KPDVAIG-KHSPELPRVAFGLGIPSIIFVDNE 114 (346)
T ss_pred HHHHHHhhc-CCceEee-cCCcchhhHHhhcCCceEEecCCh
Confidence 478888988 9999999 567889999999999999876544
No 109
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.05 E-value=0.004 Score=59.92 Aligned_cols=107 Identities=18% Similarity=0.222 Sum_probs=72.3
Q ss_pred CCCCeEEeecchhhhhccccccccccc----CChhhHHHHHHcCCCeeeccccCchhhHHHHHHhH----h-cceeEecC
Q 036519 240 TQKGLVVNWCPQLGVLAHEATGCFLTH----CGWNSTIEALRLGVPMLAMPLWTDQSTNSKYVMDV----W-KMGLKVPA 310 (365)
Q Consensus 240 ~~~~~~~~~~p~~~~L~~~~~~~~I~h----gG~gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~----~-G~G~~~~~ 310 (365)
.+++.+.+..+-..+++.+|+ +|.- |-.+++.||+++|+|+|+- |.......+++. + ..|..++.
T Consensus 353 ~~~V~f~G~~~v~~~l~~aDv--~vlpS~~Eg~p~~vlEAma~G~PVVat----d~g~~~elv~~~~~~~~g~~G~lv~~ 426 (475)
T cd03813 353 EDNVKFTGFQNVKEYLPKLDV--LVLTSISEGQPLVILEAMAAGIPVVAT----DVGSCRELIEGADDEALGPAGEVVPP 426 (475)
T ss_pred CCeEEEcCCccHHHHHHhCCE--EEeCchhhcCChHHHHHHHcCCCEEEC----CCCChHHHhcCCcccccCCceEEECC
Confidence 467777776666678999998 6644 3457899999999999884 344455566662 0 26877774
Q ss_pred CCCCcccHHHHHHHHHHHhcCHHHH----HHHHHHHHcCCCcHHHHHHHHH
Q 036519 311 DEKGIVRREAIAHCIGEILEGDKWR----NFAKEAVAKGGSSDKNIDDFVA 357 (365)
Q Consensus 311 ~~~~~~~~~~l~~~i~~ll~~~~~~----~~a~~~~~~~g~s~~~~~~~~~ 357 (365)
-+++++.+++.++++|++.+ +++++.+++.-+-++.++++.+
T Consensus 427 -----~d~~~la~ai~~ll~~~~~~~~~~~~a~~~v~~~~s~~~~~~~y~~ 472 (475)
T cd03813 427 -----ADPEALARAILRLLKDPELRRAMGEAGRKRVERYYTLERMIDSYRR 472 (475)
T ss_pred -----CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 47999999999999988544 4444434443334444454443
No 110
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=96.93 E-value=0.016 Score=45.44 Aligned_cols=103 Identities=14% Similarity=0.193 Sum_probs=67.5
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCccccccccCCCCCCCCeeEEEcCCCCCCCCCCCcCCHHHHHHHHH
Q 036519 16 HCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLHRDPSSSISIPLETISDGYDEGRSAQAETDQAYVDRFW 95 (365)
Q Consensus 16 ~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~~~~~~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 95 (365)
||++++....+| ...+++.|.++||+|++++.....+.... ..++.+..++.+ . . .....+
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~~----~~~i~~~~~~~~--~---k---~~~~~~---- 61 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYEI----IEGIKVIRLPSP--R---K---SPLNYI---- 61 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhhH----hCCeEEEEecCC--C---C---ccHHHH----
Confidence 577777766666 45779999999999999998555423221 267888887522 1 1 112222
Q ss_pred HHhHHHHHHHHHhcCCCcEEEEcCCCc---cHHHHHHHhC-CceEEEec
Q 036519 96 QIGVQTLTELVERMNDVDCIVYDSFLP---WALDVAKKFG-LTGAAFLT 140 (365)
Q Consensus 96 ~~~~~~l~~ll~~~~~pD~vv~D~~~~---~a~~~A~~~g-iP~v~~~~ 140 (365)
.. . .+..++++. +||+|.+-.... .+..+++..| +|++....
T Consensus 62 ~~-~-~l~k~ik~~-~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~h 107 (139)
T PF13477_consen 62 KY-F-RLRKIIKKE-KPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTVH 107 (139)
T ss_pred HH-H-HHHHHhccC-CCCEEEEecCChHHHHHHHHHHHcCCCCEEEEec
Confidence 21 2 467888888 999997665433 2556778888 99986444
No 111
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=96.91 E-value=0.0053 Score=57.23 Aligned_cols=108 Identities=18% Similarity=0.161 Sum_probs=73.0
Q ss_pred eecchh---hhhccccccccccc----CChhhHHHHHHcCCCeeeccccCchhhHHHHHHhHhcceeEecCCC-CCcccH
Q 036519 247 NWCPQL---GVLAHEATGCFLTH----CGWNSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVWKMGLKVPADE-KGIVRR 318 (365)
Q Consensus 247 ~~~p~~---~~L~~~~~~~~I~h----gG~gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~-~~~~~~ 318 (365)
.++++. .++..+|+ +|.- |...++.||+++|+|+|+... ......+++. +.|..++... +.+-..
T Consensus 267 ~~~~~~~~~~~~~~aDv--~v~ps~~e~~g~~~lEA~a~G~PvI~s~~----~~~~e~i~~~-~~G~~~~~~~~~~~~~~ 339 (388)
T TIGR02149 267 KMLPKEELVELLSNAEV--FVCPSIYEPLGIVNLEAMACGTPVVASAT----GGIPEVVVDG-ETGFLVPPDNSDADGFQ 339 (388)
T ss_pred CCCCHHHHHHHHHhCCE--EEeCCccCCCChHHHHHHHcCCCEEEeCC----CCHHHHhhCC-CceEEcCCCCCcccchH
Confidence 566654 47899998 7653 334677999999999998654 3466677777 7888887540 001123
Q ss_pred HHHHHHHHHHhcCHH----HHHHHHHHHHcCCCcHHHHHHHHHHHHh
Q 036519 319 EAIAHCIGEILEGDK----WRNFAKEAVAKGGSSDKNIDDFVANLIS 361 (365)
Q Consensus 319 ~~l~~~i~~ll~~~~----~~~~a~~~~~~~g~s~~~~~~~~~~i~~ 361 (365)
+++.++|.++++|++ +.+++++...+.=+.+..++++++..++
T Consensus 340 ~~l~~~i~~l~~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~y~~ 386 (388)
T TIGR02149 340 AELAKAINILLADPELAKKMGIAGRKRAEEEFSWGSIAKKTVEMYRK 386 (388)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 899999999998874 4445555444545566677777766554
No 112
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=96.57 E-value=0.0069 Score=56.16 Aligned_cols=85 Identities=24% Similarity=0.237 Sum_probs=61.4
Q ss_pred CCCCeEEeecchh-hhhccccccccccc--CChhhHHHHHHcCCCeeeccccCchhhHHHHHHhHhcceeEecCCCCCcc
Q 036519 240 TQKGLVVNWCPQL-GVLAHEATGCFLTH--CGWNSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVWKMGLKVPADEKGIV 316 (365)
Q Consensus 240 ~~~~~~~~~~p~~-~~L~~~~~~~~I~h--gG~gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~ 316 (365)
++++.+.++.++. .++..+++-++.++ |...++.||+++|+|+|+..... .....++.. ..|..++. -
T Consensus 260 ~~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v~~~-~~G~lv~~-----~ 330 (372)
T cd04949 260 EDYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEIIEDG-ENGYLVPK-----G 330 (372)
T ss_pred cceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCC---CcHHHcccC-CCceEeCC-----C
Confidence 3556666655443 48999999444444 33568999999999999865321 234566666 78888874 4
Q ss_pred cHHHHHHHHHHHhcCHH
Q 036519 317 RREAIAHCIGEILEGDK 333 (365)
Q Consensus 317 ~~~~l~~~i~~ll~~~~ 333 (365)
+.+++.++|.++++|++
T Consensus 331 d~~~la~~i~~ll~~~~ 347 (372)
T cd04949 331 DIEALAEAIIELLNDPK 347 (372)
T ss_pred cHHHHHHHHHHHHcCHH
Confidence 79999999999999874
No 113
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=96.54 E-value=0.0024 Score=49.76 Aligned_cols=80 Identities=23% Similarity=0.254 Sum_probs=50.3
Q ss_pred CCCCeEEeecchh-hhhccccccccccc---CChhhHHHHHHcCCCeeeccccCchhhHHHHHHhHhcceeEecCCCCCc
Q 036519 240 TQKGLVVNWCPQL-GVLAHEATGCFLTH---CGWNSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVWKMGLKVPADEKGI 315 (365)
Q Consensus 240 ~~~~~~~~~~p~~-~~L~~~~~~~~I~h---gG~gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~ 315 (365)
..++...+|++.. .++..|++.+..+. |-.+++.|++++|+|+|+.+. .....++.. +.|..+ .+
T Consensus 52 ~~~v~~~g~~~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~-----~~~~~~~~~-~~~~~~-~~---- 120 (135)
T PF13692_consen 52 RPNVRFHGFVEELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDN-----GAEGIVEED-GCGVLV-AN---- 120 (135)
T ss_dssp HCTEEEE-S-HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHH-----HCHCHS----SEEEE--TT----
T ss_pred CCCEEEcCCHHHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCc-----chhhheeec-CCeEEE-CC----
Confidence 4588888988633 48999999655442 234899999999999999775 123344446 888777 32
Q ss_pred ccHHHHHHHHHHHhcC
Q 036519 316 VRREAIAHCIGEILEG 331 (365)
Q Consensus 316 ~~~~~l~~~i~~ll~~ 331 (365)
+++++.++|.++++|
T Consensus 121 -~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 121 -DPEELAEAIERLLND 135 (135)
T ss_dssp --HHHHHHHHHHHHH-
T ss_pred -CHHHHHHHHHHHhcC
Confidence 899999999999875
No 114
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=96.46 E-value=0.02 Score=53.24 Aligned_cols=107 Identities=20% Similarity=0.094 Sum_probs=68.9
Q ss_pred CCCCeEEeecchhh---hhccccccccc------ccCCh-hhHHHHHHcCCCeeeccccCchhhHHHHHHhHhcceeEec
Q 036519 240 TQKGLVVNWCPQLG---VLAHEATGCFL------THCGW-NSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVWKMGLKVP 309 (365)
Q Consensus 240 ~~~~~~~~~~p~~~---~L~~~~~~~~I------~hgG~-gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~~~ 309 (365)
.+|+...+++|+.+ ++.++|+.++- +.++. +.+.|++++|+|+|+.+. ...++.. + |..+.
T Consensus 253 ~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~-------~~~~~~~-~-~~~~~ 323 (373)
T cd04950 253 LPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPL-------PEVRRYE-D-EVVLI 323 (373)
T ss_pred CCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCc-------HHHHhhc-C-cEEEe
Confidence 37899999998665 78889984332 23333 469999999999998763 2333444 4 33333
Q ss_pred CCCCCcccHHHHHHHHHHHhcCH-HHH-HHHHHHHHcCCCcHHHHHHHHHHHHh
Q 036519 310 ADEKGIVRREAIAHCIGEILEGD-KWR-NFAKEAVAKGGSSDKNIDDFVANLIS 361 (365)
Q Consensus 310 ~~~~~~~~~~~l~~~i~~ll~~~-~~~-~~a~~~~~~~g~s~~~~~~~~~~i~~ 361 (365)
. -+++++.++|.+++.++ ..+ +++++ ..+.-+-+..++++.+.+.+
T Consensus 324 ~-----~d~~~~~~ai~~~l~~~~~~~~~~~~~-~~~~~sW~~~a~~~~~~l~~ 371 (373)
T cd04950 324 A-----DDPEEFVAAIEKALLEDGPARERRRLR-LAAQNSWDARAAEMLEALQE 371 (373)
T ss_pred C-----CCHHHHHHHHHHHHhcCCchHHHHHHH-HHHHCCHHHHHHHHHHHHHh
Confidence 2 27999999999976433 222 22222 44455666777777766654
No 115
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=96.46 E-value=0.017 Score=52.77 Aligned_cols=106 Identities=15% Similarity=0.202 Sum_probs=70.5
Q ss_pred cCCCCeEEeecchhhh---hcccccccccccC-------C------hhhHHHHHHcCCCeeeccccCchhhHHHHHHhHh
Q 036519 239 TTQKGLVVNWCPQLGV---LAHEATGCFLTHC-------G------WNSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVW 302 (365)
Q Consensus 239 ~~~~~~~~~~~p~~~~---L~~~~~~~~I~hg-------G------~gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~~ 302 (365)
..+|+...+|+|+.++ |.. +.+++...- . -+-+.+++++|+|+|+. ++...+..+++.
T Consensus 205 ~~~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~----~~~~~~~~V~~~- 278 (333)
T PRK09814 205 NSANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVW----SKAAIADFIVEN- 278 (333)
T ss_pred cCCCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEEC----CCccHHHHHHhC-
Confidence 4578889999998875 343 333332211 1 12377899999999985 456788899999
Q ss_pred cceeEecCCCCCcccHHHHHHHHHHHhcCH--HHHHHHHHHHHcC--C-CcHHHHHHHHH
Q 036519 303 KMGLKVPADEKGIVRREAIAHCIGEILEGD--KWRNFAKEAVAKG--G-SSDKNIDDFVA 357 (365)
Q Consensus 303 G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~--~~~~~a~~~~~~~--g-~s~~~~~~~~~ 357 (365)
++|+.++ +.+++.+++.++..+. ++++++++.++.. | --.+++++++.
T Consensus 279 ~~G~~v~-------~~~el~~~l~~~~~~~~~~m~~n~~~~~~~~~~g~~~~~~~~~~~~ 331 (333)
T PRK09814 279 GLGFVVD-------SLEELPEIIDNITEEEYQEMVENVKKISKLLRNGYFTKKALVDAIK 331 (333)
T ss_pred CceEEeC-------CHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHh
Confidence 9999987 3568999998864322 5677887775552 2 24445555543
No 116
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=96.45 E-value=0.0071 Score=46.05 Aligned_cols=55 Identities=16% Similarity=0.291 Sum_probs=44.8
Q ss_pred hhhcccccccccccCChhhHHHHHHcCCCeeecccc--------CchhhHHHHHHhHhcceeEecC
Q 036519 253 GVLAHEATGCFLTHCGWNSTIEALRLGVPMLAMPLW--------TDQSTNSKYVMDVWKMGLKVPA 310 (365)
Q Consensus 253 ~~L~~~~~~~~I~hgG~gs~~eal~~GvP~v~~P~~--------~DQ~~nA~~v~~~~G~G~~~~~ 310 (365)
.+-..+++ +|+|+|.||+..++..++|.|++|-. ..|-.-|..+.+. +.=+...+
T Consensus 61 sli~darI--VISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~klae~-~~vv~~sp 123 (161)
T COG5017 61 SLIHDARI--VISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLAEI-NYVVACSP 123 (161)
T ss_pred HHhhcceE--EEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHHhc-CceEEEcC
Confidence 36666777 99999999999999999999999952 2467778888888 77666664
No 117
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=96.43 E-value=0.027 Score=40.63 Aligned_cols=79 Identities=16% Similarity=0.106 Sum_probs=52.5
Q ss_pred cCChhhHHHHHHcCCCeeeccccCchhhHHHHHHhHhcceeEecCCCCCcccHHHHHHHHHHHhcCHH----HHHHHHHH
Q 036519 266 HCGWNSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVWKMGLKVPADEKGIVRREAIAHCIGEILEGDK----WRNFAKEA 341 (365)
Q Consensus 266 hgG~gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~----~~~~a~~~ 341 (365)
+|-..-+.|++++|+|+|.-+. ......+. - |.....- . +++++.+++..+++|++ +++++++.
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~~~-~-~~~~~~~-----~-~~~el~~~i~~ll~~~~~~~~ia~~a~~~ 76 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREIFE-D-GEHIITY-----N-DPEELAEKIEYLLENPEERRRIAKNARER 76 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHHcC-C-CCeEEEE-----C-CHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 5566789999999999988754 23333322 2 3222222 2 79999999999999984 45555555
Q ss_pred HHcCCCcHHHHHHHH
Q 036519 342 VAKGGSSDKNIDDFV 356 (365)
Q Consensus 342 ~~~~g~s~~~~~~~~ 356 (365)
..+.-+...-+++++
T Consensus 77 v~~~~t~~~~~~~il 91 (92)
T PF13524_consen 77 VLKRHTWEHRAEQIL 91 (92)
T ss_pred HHHhCCHHHHHHHHH
Confidence 666666666666665
No 118
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.40 E-value=0.017 Score=50.30 Aligned_cols=94 Identities=16% Similarity=0.141 Sum_probs=69.8
Q ss_pred CCCCeEE-eecchhhhhcccccccccccCChhhHHHHHHcCCCeeeccccCchhh--HHHHHHhHhcceeEecCCCCCcc
Q 036519 240 TQKGLVV-NWCPQLGVLAHEATGCFLTHCGWNSTIEALRLGVPMLAMPLWTDQST--NSKYVMDVWKMGLKVPADEKGIV 316 (365)
Q Consensus 240 ~~~~~~~-~~~p~~~~L~~~~~~~~I~hgG~gs~~eal~~GvP~v~~P~~~DQ~~--nA~~v~~~~G~G~~~~~~~~~~~ 316 (365)
.+|..+. .|-...++|+++++ .|--.|. .+-+++-.|+|+|.+|-.+-|+. -|.+=.+++|+.+.+-. .
T Consensus 293 kdnc~l~lsqqsfadiLH~ada--algmAGT-AtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~-----~ 364 (412)
T COG4370 293 KDNCSLWLSQQSFADILHAADA--ALGMAGT-ATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVR-----P 364 (412)
T ss_pred cCceEEEEeHHHHHHHHHHHHH--HHHhccc-hHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecC-----C
Confidence 3555544 67778889999999 8877664 34568889999999999888865 67777777788877773 3
Q ss_pred cHHHHHHHHHHHhcCHHHHHHHHHH
Q 036519 317 RREAIAHCIGEILEGDKWRNFAKEA 341 (365)
Q Consensus 317 ~~~~l~~~i~~ll~~~~~~~~a~~~ 341 (365)
.+..-....++++.|+++.+.++.-
T Consensus 365 ~aq~a~~~~q~ll~dp~r~~air~n 389 (412)
T COG4370 365 EAQAAAQAVQELLGDPQRLTAIRHN 389 (412)
T ss_pred chhhHHHHHHHHhcChHHHHHHHhc
Confidence 4444455556699999888877754
No 119
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=96.38 E-value=0.018 Score=54.32 Aligned_cols=90 Identities=12% Similarity=0.145 Sum_probs=50.4
Q ss_pred CCCeEEeecchhh---hhccccccccc---ccCChhhHHHHHHcCCCeeeccc-cCchhhHHHHHHhHhcceeEecCCCC
Q 036519 241 QKGLVVNWCPQLG---VLAHEATGCFL---THCGWNSTIEALRLGVPMLAMPL-WTDQSTNSKYVMDVWKMGLKVPADEK 313 (365)
Q Consensus 241 ~~~~~~~~~p~~~---~L~~~~~~~~I---~hgG~gs~~eal~~GvP~v~~P~-~~DQ~~nA~~v~~~~G~G~~~~~~~~ 313 (365)
+++.+.++.++.+ .+..+|+ ++ ..+|.+|++|||+.|||+|.+|- ..=.+.-|..+..+ |+.-.+..
T Consensus 342 ~Ri~f~~~~~~~ehl~~~~~~DI--~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~l-Gl~ElIA~--- 415 (468)
T PF13844_consen 342 DRIIFSPVAPREEHLRRYQLADI--CLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRAL-GLPELIAD--- 415 (468)
T ss_dssp GGEEEEE---HHHHHHHGGG-SE--EE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHHH-T-GGGB-S---
T ss_pred hhEEEcCCCCHHHHHHHhhhCCE--EeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHHc-CCchhcCC---
Confidence 4566666666554 4455666 65 46899999999999999999994 22344566777778 99876663
Q ss_pred CcccHHHHHHHHHHHhcCHHHHHHHH
Q 036519 314 GIVRREAIAHCIGEILEGDKWRNFAK 339 (365)
Q Consensus 314 ~~~~~~~l~~~i~~ll~~~~~~~~a~ 339 (365)
+.++-.+.-.++-+|+++++..|
T Consensus 416 ---s~~eYv~~Av~La~D~~~l~~lR 438 (468)
T PF13844_consen 416 ---SEEEYVEIAVRLATDPERLRALR 438 (468)
T ss_dssp ---SHHHHHHHHHHHHH-HHHHHHHH
T ss_pred ---CHHHHHHHHHHHhCCHHHHHHHH
Confidence 45666555557777875544443
No 120
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=96.22 E-value=0.17 Score=51.11 Aligned_cols=85 Identities=14% Similarity=0.133 Sum_probs=56.4
Q ss_pred CCCCeEEeec-ch---hhhhcc-c---cccccccc----CChhhHHHHHHcCCCeeeccccCchhhHHHHHHhHhcceeE
Q 036519 240 TQKGLVVNWC-PQ---LGVLAH-E---ATGCFLTH----CGWNSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVWKMGLK 307 (365)
Q Consensus 240 ~~~~~~~~~~-p~---~~~L~~-~---~~~~~I~h----gG~gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~ 307 (365)
.+++...++. +. ..++.+ + ++ ||+- +-.-++.||+++|+|+|+.-. -..+..+++- .-|..
T Consensus 618 ~g~V~flG~~~~~~~~~elyr~iAd~adV--fV~PS~~EpFGLvvLEAMAcGlPVVAT~~----GG~~EiV~dg-~tGfL 690 (784)
T TIGR02470 618 HGQIRWIGAQLNRVRNGELYRYIADTKGI--FVQPALYEAFGLTVLEAMTCGLPTFATRF----GGPLEIIQDG-VSGFH 690 (784)
T ss_pred CCeEEEccCcCCcccHHHHHHHhhccCcE--EEECCcccCCCHHHHHHHHcCCCEEEcCC----CCHHHHhcCC-CcEEE
Confidence 3566666653 32 234543 2 35 7643 234689999999999988644 3566677777 77988
Q ss_pred ecCCCCCcccHHHHHHHHHHHh----cCHHHHH
Q 036519 308 VPADEKGIVRREAIAHCIGEIL----EGDKWRN 336 (365)
Q Consensus 308 ~~~~~~~~~~~~~l~~~i~~ll----~~~~~~~ 336 (365)
++. -++++++++|.+++ +|++.++
T Consensus 691 Vdp-----~D~eaLA~aL~~ll~kll~dp~~~~ 718 (784)
T TIGR02470 691 IDP-----YHGEEAAEKIVDFFEKCDEDPSYWQ 718 (784)
T ss_pred eCC-----CCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 884 47889999988875 5764433
No 121
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=96.20 E-value=0.0044 Score=56.85 Aligned_cols=104 Identities=16% Similarity=0.138 Sum_probs=62.4
Q ss_pred CCCeEEee---cchhhhhcccccccccccCChhhHHHHHHcCCCeeeccccCchhhHHHHHHhHhcceeEecCCCCCccc
Q 036519 241 QKGLVVNW---CPQLGVLAHEATGCFLTHCGWNSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVWKMGLKVPADEKGIVR 317 (365)
Q Consensus 241 ~~~~~~~~---~p~~~~L~~~~~~~~I~hgG~gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~ 317 (365)
+|+.+++- .....+|++|++ +|+..| |-.-||.++|+|+|.+=..++.+.- ... |..+.+ ..+
T Consensus 239 ~~v~~~~~l~~~~~l~ll~~a~~--vvgdSs-GI~eEa~~lg~P~v~iR~~geRqe~----r~~-~~nvlv------~~~ 304 (346)
T PF02350_consen 239 DNVRLIEPLGYEEYLSLLKNADL--VVGDSS-GIQEEAPSLGKPVVNIRDSGERQEG----RER-GSNVLV------GTD 304 (346)
T ss_dssp TTEEEE----HHHHHHHHHHESE--EEESSH-HHHHHGGGGT--EEECSSS-S-HHH----HHT-TSEEEE------TSS
T ss_pred CCEEEECCCCHHHHHHHHhcceE--EEEcCc-cHHHHHHHhCCeEEEecCCCCCHHH----Hhh-cceEEe------CCC
Confidence 37777754 456679999999 999999 5555999999999999333332221 223 444443 368
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 036519 318 REAIAHCIGEILEGDKWRNFAKEAVAKGGSSDKNIDDFVANL 359 (365)
Q Consensus 318 ~~~l~~~i~~ll~~~~~~~~a~~~~~~~g~s~~~~~~~~~~i 359 (365)
+++|.+++.+++.+....++.+.....-|.. .+.+.+++.|
T Consensus 305 ~~~I~~ai~~~l~~~~~~~~~~~~~npYgdG-~as~rI~~~L 345 (346)
T PF02350_consen 305 PEAIIQAIEKALSDKDFYRKLKNRPNPYGDG-NASERIVEIL 345 (346)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHCS--TT-SS--HHHHHHHHH
T ss_pred HHHHHHHHHHHHhChHHHHhhccCCCCCCCC-cHHHHHHHhh
Confidence 9999999999998755555554322233322 2445555544
No 122
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=95.83 E-value=0.063 Score=51.90 Aligned_cols=114 Identities=18% Similarity=0.197 Sum_probs=75.3
Q ss_pred CCCCeEEeecchhhhhccccccccccc---CC-hhhHHHHHHcCCCeeeccccCchhhHHHHHHhHhcceeEecCCC--C
Q 036519 240 TQKGLVVNWCPQLGVLAHEATGCFLTH---CG-WNSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVWKMGLKVPADE--K 313 (365)
Q Consensus 240 ~~~~~~~~~~p~~~~L~~~~~~~~I~h---gG-~gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~--~ 313 (365)
.+++...++.+...++..+++ +|.- -| ..++.||+++|+|+|+.... ..+...+++- .-|..++... +
T Consensus 375 ~~~V~f~G~~~~~~~~~~adv--~v~pS~~Egfgl~~lEAma~G~PVI~~dv~---~G~~eiI~~g-~nG~lv~~~~~~~ 448 (500)
T TIGR02918 375 QDYIHLKGHRNLSEVYKDYEL--YLSASTSEGFGLTLMEAVGSGLGMIGFDVN---YGNPTFIEDN-KNGYLIPIDEEED 448 (500)
T ss_pred CCeEEEcCCCCHHHHHHhCCE--EEEcCccccccHHHHHHHHhCCCEEEecCC---CCCHHHccCC-CCEEEEeCCcccc
Confidence 456777788888889999999 7752 33 47899999999999987542 1244556665 6677776320 0
Q ss_pred Cccc-HHHHHHHHHHHhcCH---HHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 036519 314 GIVR-REAIAHCIGEILEGD---KWRNFAKEAVAKGGSSDKNIDDFVANLI 360 (365)
Q Consensus 314 ~~~~-~~~l~~~i~~ll~~~---~~~~~a~~~~~~~g~s~~~~~~~~~~i~ 360 (365)
..-+ .++|+++|.++++++ ++.+++++.++ .=+....+++..+.++
T Consensus 449 d~~~~~~~la~~I~~ll~~~~~~~~~~~a~~~a~-~fs~~~v~~~w~~ll~ 498 (500)
T TIGR02918 449 DEDQIITALAEKIVEYFNSNDIDAFHEYSYQIAE-GFLTANIIEKWKKLVR 498 (500)
T ss_pred chhHHHHHHHHHHHHHhChHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHh
Confidence 0112 888999999999654 34555555443 3445556666666554
No 123
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=95.82 E-value=0.014 Score=46.37 Aligned_cols=93 Identities=15% Similarity=0.131 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhCCCeEEEEeCcccccc--ccCCCCCCCCeeEEEcCCCCCCCCCCCcCCHHHHHHHHHHHhHHHHHHHH-
Q 036519 30 PLLQFSKRLEHNGIKVTLVTTYFISKS--LHRDPSSSISIPLETISDGYDEGRSAQAETDQAYVDRFWQIGVQTLTELV- 106 (365)
Q Consensus 30 p~l~la~~L~~~Gh~Vt~~~~~~~~~~--v~~~~~~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll- 106 (365)
-+..|+++|.++||+|++++....... ... .++.+..++ ++. ..... ....+. ..+..++
T Consensus 6 ~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~-----~~~~~~~~~--~~~-~~~~~-~~~~~~--------~~~~~~l~ 68 (160)
T PF13579_consen 6 YVRELARALAARGHEVTVVTPQPDPEDDEEEE-----DGVRVHRLP--LPR-RPWPL-RLLRFL--------RRLRRLLA 68 (160)
T ss_dssp HHHHHHHHHHHTT-EEEEEEE---GGG-SEEE-----TTEEEEEE----S--SSSGG-GHCCHH--------HHHHHHCH
T ss_pred HHHHHHHHHHHCCCEEEEEecCCCCccccccc-----CCceEEecc--CCc-cchhh-hhHHHH--------HHHHHHHh
Confidence 467899999999999999986544432 222 578888776 232 11000 000111 2234444
Q ss_pred -HhcCCCcEEEEcCCC-cc-HHHHHHHhCCceEEEec
Q 036519 107 -ERMNDVDCIVYDSFL-PW-ALDVAKKFGLTGAAFLT 140 (365)
Q Consensus 107 -~~~~~pD~vv~D~~~-~~-a~~~A~~~giP~v~~~~ 140 (365)
... +||+|.+-... .+ +..+.+..++|++....
T Consensus 69 ~~~~-~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~h 104 (160)
T PF13579_consen 69 ARRE-RPDVVHAHSPTAGLVAALARRRRGIPLVVTVH 104 (160)
T ss_dssp HCT----SEEEEEHHHHHHHHHHHHHHHT--EEEE-S
T ss_pred hhcc-CCeEEEecccchhHHHHHHHHccCCcEEEEEC
Confidence 333 99999977532 22 33444488999988544
No 124
>PLN00142 sucrose synthase
Probab=95.66 E-value=0.16 Score=51.32 Aligned_cols=90 Identities=12% Similarity=0.178 Sum_probs=56.8
Q ss_pred ccccccccc---CCh-hhHHHHHHcCCCeeeccccCchhhHHHHHHhHhcceeEecCCCCCcccHHHHHHHHHH----Hh
Q 036519 258 EATGCFLTH---CGW-NSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVWKMGLKVPADEKGIVRREAIAHCIGE----IL 329 (365)
Q Consensus 258 ~~~~~~I~h---gG~-gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~----ll 329 (365)
+++ ||+- -|. .++.||+++|+|+|+... ......+++- .-|..++.. ++++++++|.+ ++
T Consensus 667 aDV--fVlPS~~EgFGLvvLEAMA~GlPVVATdv----GG~~EIV~dG-~tG~LV~P~-----D~eaLA~aI~~lLekLl 734 (815)
T PLN00142 667 KGA--FVQPALYEAFGLTVVEAMTCGLPTFATCQ----GGPAEIIVDG-VSGFHIDPY-----HGDEAANKIADFFEKCK 734 (815)
T ss_pred CCE--EEeCCcccCCCHHHHHHHHcCCCEEEcCC----CCHHHHhcCC-CcEEEeCCC-----CHHHHHHHHHHHHHHhc
Confidence 455 7653 454 489999999999988644 4456677766 679888854 67788777765 45
Q ss_pred cCHHHH----HHHHHHHHcCCCcHHHHHHHHHHH
Q 036519 330 EGDKWR----NFAKEAVAKGGSSDKNIDDFVANL 359 (365)
Q Consensus 330 ~~~~~~----~~a~~~~~~~g~s~~~~~~~~~~i 359 (365)
+|++.+ +++++.+.+.=+-...++++++++
T Consensus 735 ~Dp~lr~~mg~~Ar~rv~e~FSWe~~A~rll~L~ 768 (815)
T PLN00142 735 EDPSYWNKISDAGLQRIYECYTWKIYAERLLTLG 768 (815)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 677443 444333333333444555555543
No 125
>PHA01633 putative glycosyl transferase group 1
Probab=95.29 E-value=0.11 Score=47.17 Aligned_cols=84 Identities=14% Similarity=0.101 Sum_probs=57.1
Q ss_pred cCCCCeEEe---ecchh---hhhccccccccccc---CC-hhhHHHHHHcCCCeeeccc------cCch------hhHHH
Q 036519 239 TTQKGLVVN---WCPQL---GVLAHEATGCFLTH---CG-WNSTIEALRLGVPMLAMPL------WTDQ------STNSK 296 (365)
Q Consensus 239 ~~~~~~~~~---~~p~~---~~L~~~~~~~~I~h---gG-~gs~~eal~~GvP~v~~P~------~~DQ------~~nA~ 296 (365)
.++++.... ++++. .+++.+|+ +|.- =| ..++.||+++|+|+|+--. .+|+ .+++.
T Consensus 199 l~~~V~f~g~~G~~~~~dl~~~y~~aDi--fV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~ 276 (335)
T PHA01633 199 VPANVHFVAEFGHNSREYIFAFYGAMDF--TIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVE 276 (335)
T ss_pred CCCcEEEEecCCCCCHHHHHHHHHhCCE--EEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHH
Confidence 446676663 44443 57899998 7764 24 4678999999999988633 2332 33333
Q ss_pred HHH--hHhcceeEecCCCCCcccHHHHHHHHHHHhc
Q 036519 297 YVM--DVWKMGLKVPADEKGIVRREAIAHCIGEILE 330 (365)
Q Consensus 297 ~v~--~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~ 330 (365)
... .. |.|..++ ..+++++++++.+++.
T Consensus 277 ~~~~~~~-g~g~~~~-----~~d~~~la~ai~~~~~ 306 (335)
T PHA01633 277 EYYDKEH-GQKWKIH-----KFQIEDMANAIILAFE 306 (335)
T ss_pred HhcCccc-Cceeeec-----CCCHHHHHHHHHHHHh
Confidence 333 35 6777776 5799999999999953
No 126
>PLN02949 transferase, transferring glycosyl groups
Probab=95.15 E-value=0.089 Score=50.37 Aligned_cols=110 Identities=16% Similarity=0.103 Sum_probs=69.7
Q ss_pred cCCCCeEEeecchhh---hhcccccccccc---cCChh-hHHHHHHcCCCeeeccccCchhhHHHHHHh-Hhc-ceeEec
Q 036519 239 TTQKGLVVNWCPQLG---VLAHEATGCFLT---HCGWN-STIEALRLGVPMLAMPLWTDQSTNSKYVMD-VWK-MGLKVP 309 (365)
Q Consensus 239 ~~~~~~~~~~~p~~~---~L~~~~~~~~I~---hgG~g-s~~eal~~GvP~v~~P~~~DQ~~nA~~v~~-~~G-~G~~~~ 309 (365)
+.+++...+++++.+ +|..|++ +|+ +-|.| ++.||+++|+|.|+....+--. ..+.. .-| .|...
T Consensus 333 L~~~V~f~g~v~~~el~~ll~~a~~--~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~~---eIV~~~~~g~tG~l~- 406 (463)
T PLN02949 333 LDGDVEFHKNVSYRDLVRLLGGAVA--GLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPKM---DIVLDEDGQQTGFLA- 406 (463)
T ss_pred CCCcEEEeCCCCHHHHHHHHHhCcE--EEeCCccCCCChHHHHHHHcCCcEEEeCCCCCcc---eeeecCCCCcccccC-
Confidence 357788888887654 7888988 763 23443 7999999999999986532100 01111 101 12211
Q ss_pred CCCCCcccHHHHHHHHHHHhc-CH----HHHHHHHHHHHcCCCcHHHHHHHHHHHHh
Q 036519 310 ADEKGIVRREAIAHCIGEILE-GD----KWRNFAKEAVAKGGSSDKNIDDFVANLIS 361 (365)
Q Consensus 310 ~~~~~~~~~~~l~~~i~~ll~-~~----~~~~~a~~~~~~~g~s~~~~~~~~~~i~~ 361 (365)
. +++++++++.++++ ++ ++.+++++.+++ -+.++..+++.+.+.+
T Consensus 407 -----~-~~~~la~ai~~ll~~~~~~r~~m~~~ar~~~~~-FS~e~~~~~~~~~i~~ 456 (463)
T PLN02949 407 -----T-TVEEYADAILEVLRMRETERLEIAAAARKRANR-FSEQRFNEDFKDAIRP 456 (463)
T ss_pred -----C-CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHH
Confidence 2 68999999999997 44 355666665544 5666667777666654
No 127
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=95.06 E-value=0.15 Score=49.38 Aligned_cols=110 Identities=15% Similarity=0.200 Sum_probs=76.3
Q ss_pred CCCCeEEeecchh-hhhccccccccccc---CC-hhhHHHHHHcCCCeeeccccCchhhHHHHHHhHhcceeEecCCCCC
Q 036519 240 TQKGLVVNWCPQL-GVLAHEATGCFLTH---CG-WNSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVWKMGLKVPADEKG 314 (365)
Q Consensus 240 ~~~~~~~~~~p~~-~~L~~~~~~~~I~h---gG-~gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~ 314 (365)
.+++.+.+|.+.. .+|..+|+ +|.. -| .+++.||+++|+|+|+... ..+...+++. ..|..++..
T Consensus 454 ~d~V~FlG~~~Dv~~~LaaADV--fVlPS~~EGfp~vlLEAMA~GlPVVATdv----GG~~EiV~dG-~nG~LVp~~--- 523 (578)
T PRK15490 454 LERILFVGASRDVGYWLQKMNV--FILFSRYEGLPNVLIEAQMVGVPVISTPA----GGSAECFIEG-VSGFILDDA--- 523 (578)
T ss_pred CCcEEECCChhhHHHHHHhCCE--EEEcccccCccHHHHHHHHhCCCEEEeCC----CCcHHHcccC-CcEEEECCC---
Confidence 4677887776433 48999999 8753 44 5799999999999997754 3566777777 788888754
Q ss_pred cccHHHHH------HHHHHHhcCH-HHHHHHHHHHHcCCCcHHHHHHHHHHHHh
Q 036519 315 IVRREAIA------HCIGEILEGD-KWRNFAKEAVAKGGSSDKNIDDFVANLIS 361 (365)
Q Consensus 315 ~~~~~~l~------~~i~~ll~~~-~~~~~a~~~~~~~g~s~~~~~~~~~~i~~ 361 (365)
+++.+. .++.+++.+. .+.+++++.+.+.-+.+.-+++..+.+.+
T Consensus 524 --D~~aLa~ai~lA~aL~~ll~~~~~mg~~ARe~V~e~FS~e~Mv~~y~ki~~~ 575 (578)
T PRK15490 524 --QTVNLDQACRYAEKLVNLWRSRTGICQQTQSFLQERFTVEHMVGTFVKTIAS 575 (578)
T ss_pred --ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Confidence 333333 3344444332 45677777777777788888888777664
No 128
>PRK14098 glycogen synthase; Provisional
Probab=94.86 E-value=0.13 Score=49.77 Aligned_cols=114 Identities=16% Similarity=0.127 Sum_probs=74.6
Q ss_pred ccCCCCeEEeecchh---hhhcccccccccccC---Ch-hhHHHHHHcCCCeeeccccC--chhhHHHHHHhHhcceeEe
Q 036519 238 ETTQKGLVVNWCPQL---GVLAHEATGCFLTHC---GW-NSTIEALRLGVPMLAMPLWT--DQSTNSKYVMDVWKMGLKV 308 (365)
Q Consensus 238 ~~~~~~~~~~~~p~~---~~L~~~~~~~~I~hg---G~-gs~~eal~~GvP~v~~P~~~--DQ~~nA~~v~~~~G~G~~~ 308 (365)
+.++++.+..+++.. .+++.+|+ ++.-. |. .+.+||+++|+|.|+....+ |.-.+ ..++. +-|...
T Consensus 359 ~~~~~V~~~g~~~~~~~~~~~a~aDi--~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~--~~~~~-~~G~l~ 433 (489)
T PRK14098 359 EHPEQVSVQTEFTDAFFHLAIAGLDM--LLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEE--VSEDK-GSGFIF 433 (489)
T ss_pred HCCCCEEEEEecCHHHHHHHHHhCCE--EEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeec--CCCCC-CceeEe
Confidence 345778888877764 58899999 77543 22 47789999999888776432 21110 11235 678777
Q ss_pred cCCCCCcccHHHHHHHHHHHh---cCH-HHHHHHHHHHHcCCCcHHHHHHHHHHHHh
Q 036519 309 PADEKGIVRREAIAHCIGEIL---EGD-KWRNFAKEAVAKGGSSDKNIDDFVANLIS 361 (365)
Q Consensus 309 ~~~~~~~~~~~~l~~~i~~ll---~~~-~~~~~a~~~~~~~g~s~~~~~~~~~~i~~ 361 (365)
+ ..++++|.++|.+++ +|+ .+++.+++.+++.-+-++.+++.++..++
T Consensus 434 ~-----~~d~~~la~ai~~~l~~~~~~~~~~~~~~~~~~~~fsw~~~a~~y~~lY~~ 485 (489)
T PRK14098 434 H-----DYTPEALVAKLGEALALYHDEERWEELVLEAMERDFSWKNSAEEYAQLYRE 485 (489)
T ss_pred C-----CCCHHHHHHHHHHHHHHHcCHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 7 457999999999865 465 45555555555555566677777766544
No 129
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=94.57 E-value=0.24 Score=39.86 Aligned_cols=100 Identities=13% Similarity=0.112 Sum_probs=51.3
Q ss_pred CCCChHHHHHHHHHHHhCCCeEEEEeCccccccccCCCCCCCCeeEEEcCCCCCCCCCCCcCCHHHHHHHHHHHhHHHHH
Q 036519 24 AQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLHRDPSSSISIPLETISDGYDEGRSAQAETDQAYVDRFWQIGVQTLT 103 (365)
Q Consensus 24 ~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~~~~~~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 103 (365)
..|=-.-++.|+++|.++||+|++++......... . ....... ... ......... +.. ...+.
T Consensus 11 ~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~------~--~~~~~~~-~~~---~~~~~~~~~---~~~--~~~~~ 73 (177)
T PF13439_consen 11 IGGAERVVLNLARALAKRGHEVTVVSPGVKDPIEE------E--LVKIFVK-IPY---PIRKRFLRS---FFF--MRRLR 73 (177)
T ss_dssp SSHHHHHHHHHHHHHHHTT-EEEEEESS-TTS-SS------T--EEEE----TT----SSTSS--HH---HHH--HHHHH
T ss_pred CChHHHHHHHHHHHHHHCCCEEEEEEcCCCccchh------h--ccceeee-eec---ccccccchh---HHH--HHHHH
Confidence 44666778999999999999999997665444333 1 1111110 110 000111111 111 23466
Q ss_pred HHHHhcCCCcEEEEcCCC-ccHHHHHHHhCCceEEEeccc
Q 036519 104 ELVERMNDVDCIVYDSFL-PWALDVAKKFGLTGAAFLTQS 142 (365)
Q Consensus 104 ~ll~~~~~pD~vv~D~~~-~~a~~~A~~~giP~v~~~~~~ 142 (365)
.++++. +||+|-+-... .+....+-. ++|.+......
T Consensus 74 ~~i~~~-~~DiVh~~~~~~~~~~~~~~~-~~~~v~~~H~~ 111 (177)
T PF13439_consen 74 RLIKKE-KPDIVHIHGPPAFWIALLACR-KVPIVYTIHGP 111 (177)
T ss_dssp HHHHHH-T-SEEECCTTHCCCHHHHHHH-CSCEEEEE-HH
T ss_pred HHHHHc-CCCeEEecccchhHHHHHhcc-CCCEEEEeCCC
Confidence 777777 99999544322 233333333 99999877655
No 130
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.48 E-value=0.43 Score=38.05 Aligned_cols=102 Identities=18% Similarity=0.246 Sum_probs=66.5
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCccccccccCCCCCCCCeeEEEcCCCCCC----CCC--CCcC
Q 036519 12 SKLAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLHRDPSSSISIPLETISDGYDE----GRS--AQAE 85 (365)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~~~~~~~~gi~~~~l~~~~~~----~~~--~~~~ 85 (365)
+.+|||++.-.|+-|-..-++.|++.|.+.|+.|-=+-++...+-=.+ -||..+.+..+-.. .+. ...+
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR-----~GF~Ivdl~tg~~~~la~~~~~~~rvG 77 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKR-----IGFKIVDLATGEEGILARVGFSRPRVG 77 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeE-----eeeEEEEccCCceEEEEEcCCCCcccc
Confidence 457899999999999999999999999999999984444444433332 67888888633111 010 1112
Q ss_pred CHHHHHHHHHHHhHHHHHHHHHhcCCCcEEEEcCCC
Q 036519 86 TDQAYVDRFWQIGVQTLTELVERMNDVDCIVYDSFL 121 (365)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~ll~~~~~pD~vv~D~~~ 121 (365)
...-..+.+.+.....++..++. .|+||.|-..
T Consensus 78 kY~V~v~~le~i~~~al~rA~~~---aDvIIIDEIG 110 (179)
T COG1618 78 KYGVNVEGLEEIAIPALRRALEE---ADVIIIDEIG 110 (179)
T ss_pred eEEeeHHHHHHHhHHHHHHHhhc---CCEEEEeccc
Confidence 22234445555555566666664 5999999543
No 131
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=94.26 E-value=0.36 Score=42.16 Aligned_cols=90 Identities=20% Similarity=0.230 Sum_probs=55.7
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCcccc-ccccCCCCCCCC-eeEEEcCCCCCCCCCCCcCCHHHHHH
Q 036519 15 AHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFIS-KSLHRDPSSSIS-IPLETISDGYDEGRSAQAETDQAYVD 92 (365)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~-~~v~~~~~~~~g-i~~~~l~~~~~~~~~~~~~~~~~~~~ 92 (365)
|+|+++..-+. .-.|+++|.++||+|+..+..... +.+.+ .+ ..++ . ..+.
T Consensus 1 m~ILvlGGT~e-----gr~la~~L~~~g~~v~~s~~t~~~~~~~~~-----~g~~~v~-~-g~l~--------------- 53 (256)
T TIGR00715 1 MTVLLMGGTVD-----SRAIAKGLIAQGIEILVTVTTSEGKHLYPI-----HQALTVH-T-GALD--------------- 53 (256)
T ss_pred CeEEEEechHH-----HHHHHHHHHhCCCeEEEEEccCCccccccc-----cCCceEE-E-CCCC---------------
Confidence 56777655443 568999999999999987766554 34442 11 1111 1 1111
Q ss_pred HHHHHhHHHHHHHHHhcCCCcEEEEcCCCcc------HHHHHHHhCCceEEE
Q 036519 93 RFWQIGVQTLTELVERMNDVDCIVYDSFLPW------ALDVAKKFGLTGAAF 138 (365)
Q Consensus 93 ~~~~~~~~~l~~ll~~~~~pD~vv~D~~~~~------a~~~A~~~giP~v~~ 138 (365)
...+.+++.+. ++|+||--.+-+. +..+|+++|||++.|
T Consensus 54 ------~~~l~~~l~~~-~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~ 98 (256)
T TIGR00715 54 ------PQELREFLKRH-SIDILVDATHPFAAQITTNATAVCKELGIPYVRF 98 (256)
T ss_pred ------HHHHHHHHHhc-CCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEE
Confidence 12255666666 8897774433332 578899999999986
No 132
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=94.25 E-value=0.21 Score=41.73 Aligned_cols=119 Identities=16% Similarity=0.098 Sum_probs=64.7
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCccccccccCCCCCCCCeeEEEcCCCCCC---CCCCCcCCHHHHH
Q 036519 15 AHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLHRDPSSSISIPLETISDGYDE---GRSAQAETDQAYV 91 (365)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~~~~~~~~gi~~~~l~~~~~~---~~~~~~~~~~~~~ 91 (365)
||||+.---+. +.--+..|+++|.+.||+|+++.+...+.-..........+.......+... ..+.-.+++..-.
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~L~~~g~~V~VvAP~~~~Sg~g~sit~~~pl~~~~~~~~~~~~~~~~~~v~GTPaDcv 79 (196)
T PF01975_consen 1 MRILLTNDDGI-DAPGIRALAKALSALGHDVVVVAPDSEQSGTGHSITLHKPLRVTEVEPGHDPGGVEAYAVSGTPADCV 79 (196)
T ss_dssp SEEEEE-SS-T-TSHHHHHHHHHHTTTSSEEEEEEESSSTTTSTTS--SSSEEEEEEEE-TTCCSTTEEEEESS-HHHHH
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhcCCeEEEEeCCCCCcCcceeecCCCCeEEEEEEecccCCCCCEEEEcCcHHHHH
Confidence 67777776555 5556778899998788999999988776555431111223444332111111 0111123333222
Q ss_pred HHHHHHhHHHHHHHHHhcCCCcEEEEc----------CCCc---cHHHHHHHhCCceEEEeccc
Q 036519 92 DRFWQIGVQTLTELVERMNDVDCIVYD----------SFLP---WALDVAKKFGLTGAAFLTQS 142 (365)
Q Consensus 92 ~~~~~~~~~~l~~ll~~~~~pD~vv~D----------~~~~---~a~~~A~~~giP~v~~~~~~ 142 (365)
. -.+..++... +||+||+- .+.. .|..-|..+|||.|.++...
T Consensus 80 ~-------~al~~~~~~~-~pDLViSGiN~G~N~g~~v~~SGTVgAA~ea~~~GipaIA~S~~~ 135 (196)
T PF01975_consen 80 K-------LALDGLLPDK-KPDLVISGINHGANLGTDVLYSGTVGAAMEAALRGIPAIAVSLDS 135 (196)
T ss_dssp H-------HHHHCTSTTS-S-SEEEEEEEES---GGGGGG-HHHHHHHHHHHTTSEEEEEEEES
T ss_pred H-------HHHHhhhccC-CCCEEEECCCCCccCCcCcccccHHHHHHHHHHcCCCeEEEeccc
Confidence 2 1234444444 69999975 1111 25666778899999987654
No 133
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=94.04 E-value=0.24 Score=46.77 Aligned_cols=97 Identities=9% Similarity=0.156 Sum_probs=68.0
Q ss_pred hhhcccccccccccCChhhHHHHHHcCCCeeeccccCchhhHHHHHHhHhcceeE-ecCCCCCcccHHHHHHHHHHHhcC
Q 036519 253 GVLAHEATGCFLTHCGWNSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVWKMGLK-VPADEKGIVRREAIAHCIGEILEG 331 (365)
Q Consensus 253 ~~L~~~~~~~~I~hgG~gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~-~~~~~~~~~~~~~l~~~i~~ll~~ 331 (365)
.++.+|++ +|..==++++. |+..|||.+.+++ |+.. ...++.. |..-. .+.+ .++.++|.+.+.++++|
T Consensus 323 ~iIs~~dl--~ig~RlHa~I~-a~~~gvP~i~i~Y--~~K~-~~~~~~l-g~~~~~~~~~---~l~~~~Li~~v~~~~~~ 392 (426)
T PRK10017 323 KILGACEL--TVGTRLHSAII-SMNFGTPAIAINY--EHKS-AGIMQQL-GLPEMAIDIR---HLLDGSLQAMVADTLGQ 392 (426)
T ss_pred HHHhhCCE--EEEecchHHHH-HHHcCCCEEEeee--hHHH-HHHHHHc-CCccEEechh---hCCHHHHHHHHHHHHhC
Confidence 68999999 99876666666 8999999999987 4333 3344667 88755 5655 78999999999999988
Q ss_pred H-HHHHHHHHHHHcC-CCcHHHHHHHHHHH
Q 036519 332 D-KWRNFAKEAVAKG-GSSDKNIDDFVANL 359 (365)
Q Consensus 332 ~-~~~~~a~~~~~~~-g~s~~~~~~~~~~i 359 (365)
. ++++..++..++. ....+...++++.|
T Consensus 393 r~~~~~~l~~~v~~~r~~~~~~~~~~~~~~ 422 (426)
T PRK10017 393 LPALNARLAEAVSRERQTGMQMVQSVLERI 422 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4 5666655543332 23444555555544
No 134
>PHA01630 putative group 1 glycosyl transferase
Probab=94.04 E-value=0.12 Score=47.20 Aligned_cols=104 Identities=14% Similarity=0.086 Sum_probs=63.2
Q ss_pred cchh---hhhcccccccccc--c-CC-hhhHHHHHHcCCCeeeccccC--chh---hHHHHHHh-----------Hhcce
Q 036519 249 CPQL---GVLAHEATGCFLT--H-CG-WNSTIEALRLGVPMLAMPLWT--DQS---TNSKYVMD-----------VWKMG 305 (365)
Q Consensus 249 ~p~~---~~L~~~~~~~~I~--h-gG-~gs~~eal~~GvP~v~~P~~~--DQ~---~nA~~v~~-----------~~G~G 305 (365)
+++. .+++.+|+ ++. + .| ..++.||+++|+|+|+.-..+ |.- .|...++. . ++|
T Consensus 198 v~~~~l~~~y~~aDv--~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~-~~G 274 (331)
T PHA01630 198 LPDDDIYSLFAGCDI--LFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPI-HVG 274 (331)
T ss_pred CCHHHHHHHHHhCCE--EEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeeecccccccccCCc-ccc
Confidence 5544 37999999 663 2 22 568999999999999976432 211 11111110 2 345
Q ss_pred eEecCCCCCcccHHHHHHHHHHHhcC---HHHHHHHHH---HHHcCCCcHHHHHHHHHHHHh
Q 036519 306 LKVPADEKGIVRREAIAHCIGEILEG---DKWRNFAKE---AVAKGGSSDKNIDDFVANLIS 361 (365)
Q Consensus 306 ~~~~~~~~~~~~~~~l~~~i~~ll~~---~~~~~~a~~---~~~~~g~s~~~~~~~~~~i~~ 361 (365)
..++ .+.+++.+++.+++.| ++.+++.++ ...+.-+-+..++++.+.+++
T Consensus 275 ~~v~------~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~~fs~~~ia~k~~~l~~~ 330 (331)
T PHA01630 275 YFLD------PDIEDAYQKLLEALANWTPEKKKENLEGRAILYRENYSYNAIAKMWEKILEK 330 (331)
T ss_pred cccC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 5444 3577888888888876 455544433 244556667777777777654
No 135
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=93.79 E-value=0.31 Score=46.86 Aligned_cols=114 Identities=14% Similarity=0.073 Sum_probs=70.4
Q ss_pred cCCCCeEEeecchh---hhhcccccccccccC---Ch-hhHHHHHHcCCCeeeccccC--chhhHHHHHHhHhcceeEec
Q 036519 239 TTQKGLVVNWCPQL---GVLAHEATGCFLTHC---GW-NSTIEALRLGVPMLAMPLWT--DQSTNSKYVMDVWKMGLKVP 309 (365)
Q Consensus 239 ~~~~~~~~~~~p~~---~~L~~~~~~~~I~hg---G~-gs~~eal~~GvP~v~~P~~~--DQ~~nA~~v~~~~G~G~~~~ 309 (365)
.+.++.+....+.. .+++.+|+ ++.-. |. .+.+||+++|+|.|+....+ |.-.+...-... +.|..++
T Consensus 344 ~~~~v~~~~~~~~~~~~~~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~v~~~~~~~~~-~~G~l~~ 420 (473)
T TIGR02095 344 YPGNVRVIIGYDEALAHLIYAGADF--ILMPSRFEPCGLTQLYAMRYGTVPIVRRTGGLADTVVDGDPEAES-GTGFLFE 420 (473)
T ss_pred CCCcEEEEEcCCHHHHHHHHHhCCE--EEeCCCcCCcHHHHHHHHHCCCCeEEccCCCccceEecCCCCCCC-CceEEeC
Confidence 44566555544443 47889999 77532 44 47889999999998865432 211110000234 6677777
Q ss_pred CCCCCcccHHHHHHHHHHHhc----CHHH-HHHHHHHHHcCCCcHHHHHHHHHHHH
Q 036519 310 ADEKGIVRREAIAHCIGEILE----GDKW-RNFAKEAVAKGGSSDKNIDDFVANLI 360 (365)
Q Consensus 310 ~~~~~~~~~~~l~~~i~~ll~----~~~~-~~~a~~~~~~~g~s~~~~~~~~~~i~ 360 (365)
.-+++++.++|.+++. |++. ++..++..++.-+-++.+++.++..+
T Consensus 421 -----~~d~~~la~~i~~~l~~~~~~~~~~~~~~~~~~~~~fsw~~~a~~~~~~Y~ 471 (473)
T TIGR02095 421 -----EYDPGALLAALSRALRLYRQDPSLWEALQKNAMSQDFSWDKSAKQYVELYR 471 (473)
T ss_pred -----CCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCcHHHHHHHHHHHH
Confidence 3478999999999986 7654 34444444444556666777766554
No 136
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=93.64 E-value=0.98 Score=36.72 Aligned_cols=91 Identities=11% Similarity=0.032 Sum_probs=48.0
Q ss_pred hCCCeEEEEeCccccccccCCCCCCCCeeEEEcCCCCCCCCCCCcCCHHHHHHHHHHHhHH---HHHHHHHhcC-CCcEE
Q 036519 40 HNGIKVTLVTTYFISKSLHRDPSSSISIPLETISDGYDEGRSAQAETDQAYVDRFWQIGVQ---TLTELVERMN-DVDCI 115 (365)
Q Consensus 40 ~~Gh~Vt~~~~~~~~~~v~~~~~~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~ll~~~~-~pD~v 115 (365)
++||+|+|+|........ +|+..+.+.. +.............++.-...... .+..|.++ . .||+|
T Consensus 1 q~gh~v~fl~~~~~~~~~-------~GV~~~~y~~--~~~~~~~~~~~~~~~e~~~~rg~av~~a~~~L~~~-Gf~PDvI 70 (171)
T PF12000_consen 1 QRGHEVVFLTERKRPPIP-------PGVRVVRYRP--PRGPTPGTHPYVRDFEAAVLRGQAVARAARQLRAQ-GFVPDVI 70 (171)
T ss_pred CCCCEEEEEecCCCCCCC-------CCcEEEEeCC--CCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHc-CCCCCEE
Confidence 479999999954443332 3788888753 210111111112222222222222 23333333 3 99999
Q ss_pred EEcCCCccHHHHHHHh-CCceEEEec
Q 036519 116 VYDSFLPWALDVAKKF-GLTGAAFLT 140 (365)
Q Consensus 116 v~D~~~~~a~~~A~~~-giP~v~~~~ 140 (365)
|.-.-...+.-+-+.+ +.|.+.+.-
T Consensus 71 ~~H~GWGe~Lflkdv~P~a~li~Y~E 96 (171)
T PF12000_consen 71 IAHPGWGETLFLKDVFPDAPLIGYFE 96 (171)
T ss_pred EEcCCcchhhhHHHhCCCCcEEEEEE
Confidence 9764433356667777 888887543
No 137
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=92.97 E-value=1.1 Score=36.53 Aligned_cols=113 Identities=18% Similarity=0.097 Sum_probs=61.7
Q ss_pred EEcCCCCCChHHHHHHHHHH-Hh-CCCeEEEEeCccccccc-----cCCCCCCCCeeEEEcCCCCCCCCCCCcCCHHHHH
Q 036519 19 VLSYPAQGHMNPLLQFSKRL-EH-NGIKVTLVTTYFISKSL-----HRDPSSSISIPLETISDGYDEGRSAQAETDQAYV 91 (365)
Q Consensus 19 ~~~~~~~GH~~p~l~la~~L-~~-~Gh~Vt~~~~~~~~~~v-----~~~~~~~~gi~~~~l~~~~~~~~~~~~~~~~~~~ 91 (365)
++..++.||..=|+.|.+.+ .+ ..++..+++..+....- ++ .......+..+|.... -........+
T Consensus 2 l~v~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~~~~~--~~~~~~~~~~~~r~r~----v~q~~~~~~~ 75 (170)
T PF08660_consen 2 LVVLGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAEQLEK--SSSKRHKILEIPRARE----VGQSYLTSIF 75 (170)
T ss_pred EEEEcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHHHHHH--hccccceeeccceEEE----echhhHhhHH
Confidence 35567889999999999999 33 35667777665543332 21 0001113444431100 0111112222
Q ss_pred HHHHHHhHHHHHHHHHhcCCCcEEEEcC--CCccHHHHHHHh------CCceEEEec
Q 036519 92 DRFWQIGVQTLTELVERMNDVDCIVYDS--FLPWALDVAKKF------GLTGAAFLT 140 (365)
Q Consensus 92 ~~~~~~~~~~l~~ll~~~~~pD~vv~D~--~~~~a~~~A~~~------giP~v~~~~ 140 (365)
..+ ......+.-+ .+. +||+||+.. .+.+.+.+|+-+ |.+.|.+-+
T Consensus 76 ~~l-~~~~~~~~il-~r~-rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES 129 (170)
T PF08660_consen 76 TTL-RAFLQSLRIL-RRE-RPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIES 129 (170)
T ss_pred HHH-HHHHHHHHHH-HHh-CCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEe
Confidence 222 2222233333 333 899999994 445678899999 999986543
No 138
>PLN02501 digalactosyldiacylglycerol synthase
Probab=91.15 E-value=0.77 Score=45.65 Aligned_cols=132 Identities=11% Similarity=0.000 Sum_probs=74.5
Q ss_pred hHhHhhHhhhhhhh----hCchhhCCCCcccccc---cCCCCeEEeecchh-hhhccccccccccc----CChhhHHHHH
Q 036519 209 WILCNTFYELEKEV----IKESEQSKLPENFSDE---TTQKGLVVNWCPQL-GVLAHEATGCFLTH----CGWNSTIEAL 276 (365)
Q Consensus 209 ~~~~~~~~~l~~~~----~~~~~~~~~p~~~~~~---~~~~~~~~~~~p~~-~~L~~~~~~~~I~h----gG~gs~~eal 276 (365)
..++.++..+..+. +.-.+.+...+.+... .+-++...++.++. .+++.+|+ ||.- |=.+++.||+
T Consensus 562 d~LLeAla~L~~~~pnvrLvIVGDGP~reeLe~la~eLgL~V~FLG~~dd~~~lyasaDV--FVlPS~sEgFGlVlLEAM 639 (794)
T PLN02501 562 RELIDLLAKHKNELDGFNLDVFGNGEDAHEVQRAAKRLDLNLNFLKGRDHADDSLHGYKV--FINPSISDVLCTATAEAL 639 (794)
T ss_pred HHHHHHHHHHHhhCCCeEEEEEcCCccHHHHHHHHHHcCCEEEecCCCCCHHHHHHhCCE--EEECCCcccchHHHHHHH
Confidence 55677776653321 2222334333333221 22234445566654 48999998 8763 2257899999
Q ss_pred HcCCCeeeccccCchhhHHHHHHhHhcceeEecCCCCCcccHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCcHHHHHHHH
Q 036519 277 RLGVPMLAMPLWTDQSTNSKYVMDVWKMGLKVPADEKGIVRREAIAHCIGEILEGDKWRNFAKEAVAKGGSSDKNIDDFV 356 (365)
Q Consensus 277 ~~GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~~~~~~g~s~~~~~~~~ 356 (365)
++|+|+|+....+... +. . |.+..+. -+.+++.+++.++|+|+..+..+.. ...-+-+...++++
T Consensus 640 A~GlPVVATd~pG~e~-----V~-~-g~nGll~------~D~EafAeAI~~LLsd~~~rl~~~a--~~~~SWeAaadrLl 704 (794)
T PLN02501 640 AMGKFVVCADHPSNEF-----FR-S-FPNCLTY------KTSEDFVAKVKEALANEPQPLTPEQ--RYNLSWEAATQRFM 704 (794)
T ss_pred HcCCCEEEecCCCCce-----Ee-e-cCCeEec------CCHHHHHHHHHHHHhCchhhhHHHH--HhhCCHHHHHHHHH
Confidence 9999999987654321 22 2 3222232 2689999999999988653332222 12333444555555
Q ss_pred H
Q 036519 357 A 357 (365)
Q Consensus 357 ~ 357 (365)
+
T Consensus 705 e 705 (794)
T PLN02501 705 E 705 (794)
T ss_pred H
Confidence 4
No 139
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=91.04 E-value=3.9 Score=39.37 Aligned_cols=38 Identities=16% Similarity=0.212 Sum_probs=29.6
Q ss_pred cEEEEEcCC------CCCChHHHHHHHHHHHhCCCeEEEEeCcc
Q 036519 15 AHCLVLSYP------AQGHMNPLLQFSKRLEHNGIKVTLVTTYF 52 (365)
Q Consensus 15 ~~il~~~~~------~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~ 52 (365)
|||++++.. ..|=-.-.-.|+++|+++||+|.++++..
T Consensus 1 m~i~~vs~E~~P~~k~GGl~~~v~~L~~aL~~~G~~v~v~~p~y 44 (473)
T TIGR02095 1 MRVLFVAAEMAPFAKTGGLADVVGALPKALAALGHDVRVLLPAY 44 (473)
T ss_pred CeEEEEEeccccccCcCcHHHHHHHHHHHHHHcCCeEEEEecCC
Confidence 789988865 33445556788999999999999998643
No 140
>PLN00142 sucrose synthase
Probab=90.98 E-value=1.4 Score=44.90 Aligned_cols=106 Identities=14% Similarity=0.121 Sum_probs=56.8
Q ss_pred HHHHHHhCCCeEE----EEeC--ccc-----cccccCCCCCCCCeeEEEcCCCCCCCCCCCcCCHHHHHHHHHHHhHHHH
Q 036519 34 FSKRLEHNGIKVT----LVTT--YFI-----SKSLHRDPSSSISIPLETISDGYDEGRSAQAETDQAYVDRFWQIGVQTL 102 (365)
Q Consensus 34 la~~L~~~Gh~Vt----~~~~--~~~-----~~~v~~~~~~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 102 (365)
++++|+++||+|+ ++|- ++. ...++. ..+.++...+.+|-+-....+...-.-...+..+........
T Consensus 320 l~~~l~~~G~~v~~~v~i~TR~i~~~~~~~~~~~~e~-v~~~~~~~I~rvP~g~~~~~l~~~i~ke~l~p~L~~f~~~~~ 398 (815)
T PLN00142 320 MLLRIKQQGLDIKPQILIVTRLIPDAKGTTCNQRLEK-VSGTEHSHILRVPFRTEKGILRKWISRFDVWPYLETFAEDAA 398 (815)
T ss_pred HHHHHHhcCCCccceeEEEEeccCCccCCcccCccee-ccCCCceEEEecCCCCCccccccccCHHHHHHHHHHHHHHHH
Confidence 5578888999774 6553 111 111222 223356777677633321011111111233333333333333
Q ss_pred HHHHHhcC-CCcEEEEcCCCc--cHHHHHHHhCCceEEEec
Q 036519 103 TELVERMN-DVDCIVYDSFLP--WALDVAKKFGLTGAAFLT 140 (365)
Q Consensus 103 ~~ll~~~~-~pD~vv~D~~~~--~a~~~A~~~giP~v~~~~ 140 (365)
+.+..+.. +||+|.+.+... .|..+++++|||.+....
T Consensus 399 ~~~~~~~~~~PDlIHaHYwdsg~vA~~La~~lgVP~v~T~H 439 (815)
T PLN00142 399 SEILAELQGKPDLIIGNYSDGNLVASLLAHKLGVTQCTIAH 439 (815)
T ss_pred HHHHHhcCCCCCEEEECCccHHHHHHHHHHHhCCCEEEEcc
Confidence 44444443 799999886654 488999999999996554
No 141
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=90.56 E-value=8 Score=33.75 Aligned_cols=116 Identities=15% Similarity=0.148 Sum_probs=62.3
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCccccccccCCCCCCCCeeEEEcC-C-CCCCCCCCCcCCHHH
Q 036519 12 SKLAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLHRDPSSSISIPLETIS-D-GYDEGRSAQAETDQA 89 (365)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~~~~~~~~gi~~~~l~-~-~~~~~~~~~~~~~~~ 89 (365)
.++||||+.---+. |.--+..|+++|.+.| +|+++.+...+.-..........+.+..+. + +.. .+.-.+++..
T Consensus 3 ~~~M~ILltNDDGi-~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~g~ait~~~pl~~~~~~~~~~~~--~y~v~GTPaD 78 (257)
T PRK13932 3 DKKPHILVCNDDGI-EGEGIHVLAASMKKIG-RVTVVAPAEPHSGMSHAMTLGVPLRIKEYQKNNRFF--GYTVSGTPVD 78 (257)
T ss_pred CCCCEEEEECCCCC-CCHHHHHHHHHHHhCC-CEEEEcCCCCCCCCcccccCCCCeEEEEEccCCCce--EEEEcCcHHH
Confidence 45689887654333 2234567899998888 798887776554443211112335554443 1 111 1111233332
Q ss_pred HHHHHHHHhHHHHHHHHHhcCCCcEEEEcC----------CCc---cHHHHHHHhCCceEEEec
Q 036519 90 YVDRFWQIGVQTLTELVERMNDVDCIVYDS----------FLP---WALDVAKKFGLTGAAFLT 140 (365)
Q Consensus 90 ~~~~~~~~~~~~l~~ll~~~~~pD~vv~D~----------~~~---~a~~~A~~~giP~v~~~~ 140 (365)
-... .+..++.. +||+||+-. +.. .|..-|..+|||.+.++.
T Consensus 79 CV~l-------al~~~~~~--~pDLVvSGIN~G~N~G~dv~ySGTVgAA~Ea~~~GiPsIA~S~ 133 (257)
T PRK13932 79 CIKV-------ALSHILPE--KPDLIVSGINYGSNTATNTLYSGTVAAALEGAIQGIPSLAFSL 133 (257)
T ss_pred HHHH-------HHHhhcCC--CCCEEEECCcCCCCCCcCEecchhHHHHHHHHHcCCCeEEEEc
Confidence 2211 22333322 899999752 211 255666678999998875
No 142
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=90.50 E-value=0.63 Score=36.39 Aligned_cols=56 Identities=13% Similarity=0.009 Sum_probs=44.6
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCccc----cccccCCCCCCCCeeEEEcC
Q 036519 13 KLAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFI----SKSLHRDPSSSISIPLETIS 73 (365)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~----~~~v~~~~~~~~gi~~~~l~ 73 (365)
++.+|++.+.++-+|-.-..-++..|+++|++|++++...- .+.+.+ .+..++.++
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~-----~~~d~V~lS 61 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIE-----TDADAILVS 61 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-----cCCCEEEEc
Confidence 57889999999999999999999999999999999986533 333333 455666664
No 143
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=90.32 E-value=1.7 Score=44.14 Aligned_cols=121 Identities=17% Similarity=0.193 Sum_probs=69.6
Q ss_pred CcEEEEEcCCC-------------CCChHHHHHHHHH--------HHhCCC----eEEEEeCccc--c-----ccccCCC
Q 036519 14 LAHCLVLSYPA-------------QGHMNPLLQFSKR--------LEHNGI----KVTLVTTYFI--S-----KSLHRDP 61 (365)
Q Consensus 14 ~~~il~~~~~~-------------~GH~~p~l~la~~--------L~~~Gh----~Vt~~~~~~~--~-----~~v~~~~ 61 (365)
.|||++++.-+ .|+..=.+.+|++ |+++|| +|+++|--.- . ..++. .
T Consensus 255 ~~rIa~lS~Hg~~~~~~~lG~~DtGGq~vYV~elaraL~~~~~~~La~~G~~v~~~V~I~TR~~~~~~~~~~~~~~e~-~ 333 (784)
T TIGR02470 255 VFNVVILSPHGYFGQENVLGLPDTGGQVVYILDQVRALENEMLQRIKLQGLEITPKILIVTRLIPDAEGTTCNQRLEK-V 333 (784)
T ss_pred cceEEEEecccccCCccccCCCCCCCceeHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCCcccccccccccc-c
Confidence 37888876654 5666677778886 568999 6778774321 1 11222 2
Q ss_pred CCCCCeeEEEcCCCCCCC----CCCCcCCHHHHHHHHHHHhHHHHHHHHHhcC-CCcEEEEcCCCc--cHHHHHHHhCCc
Q 036519 62 SSSISIPLETISDGYDEG----RSAQAETDQAYVDRFWQIGVQTLTELVERMN-DVDCIVYDSFLP--WALDVAKKFGLT 134 (365)
Q Consensus 62 ~~~~gi~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~-~pD~vv~D~~~~--~a~~~A~~~giP 134 (365)
.+..++..+.+|-+-... .+-...++...+..|... ..+.+..+.. +||+|++.+... .|..+++++|||
T Consensus 334 ~~~~~~~I~rvp~g~~~~~~~~~~i~k~~l~p~l~~f~~~---~~~~~~~~~~~~pDlIHahy~d~glva~lla~~lgVP 410 (784)
T TIGR02470 334 YGTEHAWILRVPFRTENGIILRNWISRFEIWPYLETFAED---AEKEILAELQGKPDLIIGNYSDGNLVASLLARKLGVT 410 (784)
T ss_pred cCCCceEEEEecCCCCcccccccccCHHHHHHHHHHHHHH---HHHHHHHhcCCCCCEEEECCCchHHHHHHHHHhcCCC
Confidence 233577777776332210 112222333333333333 3344444433 799999876543 378999999999
Q ss_pred eEEE
Q 036519 135 GAAF 138 (365)
Q Consensus 135 ~v~~ 138 (365)
.+..
T Consensus 411 ~v~t 414 (784)
T TIGR02470 411 QCTI 414 (784)
T ss_pred EEEE
Confidence 7754
No 144
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=90.27 E-value=0.56 Score=35.60 Aligned_cols=40 Identities=10% Similarity=0.051 Sum_probs=28.2
Q ss_pred cEEEEEcCCCCC---ChHHHHHHHHHHHhCCCeEEEEeCcccc
Q 036519 15 AHCLVLSYPAQG---HMNPLLQFSKRLEHNGIKVTLVTTYFIS 54 (365)
Q Consensus 15 ~~il~~~~~~~G---H~~p~l~la~~L~~~Gh~Vt~~~~~~~~ 54 (365)
|||+|+.-|-.+ .-.-.++++.+-.+|||+|.+++..+..
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~dL~ 43 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQRRGHEVFYYEPGDLS 43 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GGGEE
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcCcEE
Confidence 788898887554 3456788999999999999999877554
No 145
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=90.11 E-value=0.54 Score=45.66 Aligned_cols=75 Identities=12% Similarity=0.211 Sum_probs=55.0
Q ss_pred CCCeEEeecc---hhhhhcccccccccccC---ChhhHHHHHHcCCCeeeccccCchhhHHHHHHhHhcceeEecCCCCC
Q 036519 241 QKGLVVNWCP---QLGVLAHEATGCFLTHC---GWNSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVWKMGLKVPADEKG 314 (365)
Q Consensus 241 ~~~~~~~~~p---~~~~L~~~~~~~~I~hg---G~gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~ 314 (365)
.++.+.++.+ -...+.++.+ +|.-+ |.++..||+++|+|+| .......|++. .=|..+.
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~arl--~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V~d~-~NG~li~----- 473 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLRL--IIDLSKEPDLYTQISGISAGIPQI-------NKVETDYVEHN-KNGYIID----- 473 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhheE--EEECCCCCChHHHHHHHHcCCCee-------ecCCceeeEcC-CCcEEeC-----
Confidence 4666777766 2348888888 88776 6789999999999999 23334444444 4454442
Q ss_pred cccHHHHHHHHHHHhcCH
Q 036519 315 IVRREAIAHCIGEILEGD 332 (365)
Q Consensus 315 ~~~~~~l~~~i~~ll~~~ 332 (365)
+..+|.+++..+|.+.
T Consensus 474 --d~~~l~~al~~~L~~~ 489 (519)
T TIGR03713 474 --DISELLKALDYYLDNL 489 (519)
T ss_pred --CHHHHHHHHHHHHhCH
Confidence 6899999999999987
No 146
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=88.91 E-value=0.47 Score=36.68 Aligned_cols=44 Identities=14% Similarity=0.110 Sum_probs=37.3
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCccccccccC
Q 036519 15 AHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLHR 59 (365)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~~ 59 (365)
|||++...|+.+=+. ...+.++|.++|++|.++-++...+.+..
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~A~~~~~~ 44 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSPSAERFVTP 44 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESHHHHHHSHH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECCcHHHHhhh
Confidence 688888888877666 99999999999999999999988888874
No 147
>PLN02939 transferase, transferring glycosyl groups
Probab=88.91 E-value=3 Score=43.15 Aligned_cols=112 Identities=9% Similarity=0.135 Sum_probs=68.3
Q ss_pred CCCCeEEeecchh---hhhccccccccccc----CChhhHHHHHHcCCCeeeccccC--chhhH--HH-HHHhHhcceeE
Q 036519 240 TQKGLVVNWCPQL---GVLAHEATGCFLTH----CGWNSTIEALRLGVPMLAMPLWT--DQSTN--SK-YVMDVWKMGLK 307 (365)
Q Consensus 240 ~~~~~~~~~~p~~---~~L~~~~~~~~I~h----gG~gs~~eal~~GvP~v~~P~~~--DQ~~n--A~-~v~~~~G~G~~ 307 (365)
.+++.+..+.+.. .+++.+|+ ||.- +-..+++||+++|+|.|+....+ |.-.+ .. ..+.. +-|..
T Consensus 836 ~drV~FlG~~de~lah~IYAaADI--FLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg-~NGfL 912 (977)
T PLN02939 836 NNNIRLILKYDEALSHSIYAASDM--FIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVEL-RNGFT 912 (977)
T ss_pred CCeEEEEeccCHHHHHHHHHhCCE--EEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCC-CceEE
Confidence 3567777777754 48999999 8854 22467899999999998876533 21110 01 11223 45766
Q ss_pred ecCCCCCcccHHHHHHHHHHHhc----CHH-HHHHHHHHHHcCCCcHHHHHHHHHHH
Q 036519 308 VPADEKGIVRREAIAHCIGEILE----GDK-WRNFAKEAVAKGGSSDKNIDDFVANL 359 (365)
Q Consensus 308 ~~~~~~~~~~~~~l~~~i~~ll~----~~~-~~~~a~~~~~~~g~s~~~~~~~~~~i 359 (365)
++ ..++++|.+++.+++. |++ +++..++.+.+.-+-+..+++.++.-
T Consensus 913 f~-----~~D~eaLa~AL~rAL~~~~~dpe~~~~L~~~am~~dFSWe~~A~qYeeLY 964 (977)
T PLN02939 913 FL-----TPDEQGLNSALERAFNYYKRKPEVWKQLVQKDMNIDFSWDSSASQYEELY 964 (977)
T ss_pred ec-----CCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 66 3478899999988764 554 44444444444445555555555433
No 148
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=88.29 E-value=0.77 Score=34.82 Aligned_cols=36 Identities=14% Similarity=0.150 Sum_probs=33.1
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCc
Q 036519 16 HCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTY 51 (365)
Q Consensus 16 ~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~ 51 (365)
||++.+.|+-.|.....-++..|++.|++|++.+..
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~ 36 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVD 36 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCC
Confidence 589999999999999999999999999999988754
No 149
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=87.91 E-value=2.4 Score=40.59 Aligned_cols=99 Identities=13% Similarity=0.112 Sum_probs=63.9
Q ss_pred eecchh---hhhcccccccccc---cCCh-hhHHHHHHcCCC----eeeccccCchhhHHHHHHhHhcceeEecCCCCCc
Q 036519 247 NWCPQL---GVLAHEATGCFLT---HCGW-NSTIEALRLGVP----MLAMPLWTDQSTNSKYVMDVWKMGLKVPADEKGI 315 (365)
Q Consensus 247 ~~~p~~---~~L~~~~~~~~I~---hgG~-gs~~eal~~GvP----~v~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~ 315 (365)
..+++. .++..+|+ ++. +=|+ .+..||+++|+| +|+--+.+- + +.. +-|+.+++
T Consensus 342 ~~~~~~el~aly~aaDv--~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~----~---~~l-~~gllVnP----- 406 (456)
T TIGR02400 342 RSYDREELMALYRAADV--GLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGA----A---QEL-NGALLVNP----- 406 (456)
T ss_pred CCCCHHHHHHHHHhCcE--EEECccccccCccHHHHHHhcCCCCceEEEeCCCCC----h---HHh-CCcEEECC-----
Confidence 345554 36889999 775 3465 677899999999 666544332 1 223 44677774
Q ss_pred ccHHHHHHHHHHHhcCH--HHHHHHHHHHHc--CCCcHHHHHHHHHHHH
Q 036519 316 VRREAIAHCIGEILEGD--KWRNFAKEAVAK--GGSSDKNIDDFVANLI 360 (365)
Q Consensus 316 ~~~~~l~~~i~~ll~~~--~~~~~a~~~~~~--~g~s~~~~~~~~~~i~ 360 (365)
.++++++++|.++|+++ +-+++.+++.+. ..+...-++.+++.+.
T Consensus 407 ~d~~~lA~aI~~aL~~~~~er~~r~~~~~~~v~~~~~~~W~~~~l~~l~ 455 (456)
T TIGR02400 407 YDIDGMADAIARALTMPLEEREERHRAMMDKLRKNDVQRWREDFLSDLN 455 (456)
T ss_pred CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhh
Confidence 57999999999999853 333333333222 3566777777776654
No 150
>PRK10125 putative glycosyl transferase; Provisional
Probab=86.84 E-value=2.9 Score=39.39 Aligned_cols=96 Identities=14% Similarity=0.091 Sum_probs=59.0
Q ss_pred hhhhccccccccccc----CChhhHHHHHHcCCCeeeccccCchhhHHHHHHhHhcceeEecCCCCCcccHHHHHHHHHH
Q 036519 252 LGVLAHEATGCFLTH----CGWNSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVWKMGLKVPADEKGIVRREAIAHCIGE 327 (365)
Q Consensus 252 ~~~L~~~~~~~~I~h----gG~gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ 327 (365)
..++..+|+ ||.- |-..++.||+++|+|+|+....+ ....+ .. +-|..++.. ++++|++++..
T Consensus 301 ~~~y~~aDv--fV~pS~~Egfp~vilEAmA~G~PVVat~~gG----~~Eiv-~~-~~G~lv~~~-----d~~~La~~~~~ 367 (405)
T PRK10125 301 MSALNQMDA--LVFSSRVDNYPLILCEALSIGVPVIATHSDA----AREVL-QK-SGGKTVSEE-----EVLQLAQLSKP 367 (405)
T ss_pred HHHHHhCCE--EEECCccccCcCHHHHHHHcCCCEEEeCCCC----hHHhE-eC-CcEEEECCC-----CHHHHHhccCH
Confidence 346777888 7764 34578999999999999987754 22223 34 568888743 67888875543
Q ss_pred HhcCHHH---HHHHHHHHHcCCCcHHHHHHHHHHHH
Q 036519 328 ILEGDKW---RNFAKEAVAKGGSSDKNIDDFVANLI 360 (365)
Q Consensus 328 ll~~~~~---~~~a~~~~~~~g~s~~~~~~~~~~i~ 360 (365)
.+.+..+ .+++++.+.+.=+...-+++.++.-+
T Consensus 368 ~~~~~~~~~~~~~~r~~~~~~fs~~~~~~~y~~lY~ 403 (405)
T PRK10125 368 EIAQAVFGTTLAEFSQRSRAAYSGQQMLEEYVNFYQ 403 (405)
T ss_pred HHHHHhhhhHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3322212 23344444455556666666665543
No 151
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=86.52 E-value=3.2 Score=36.14 Aligned_cols=93 Identities=19% Similarity=0.365 Sum_probs=55.5
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCccccccccCCCCCCCCeeEEEcCCCCCCCCCCCcCCHHHHHHHH
Q 036519 15 AHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLHRDPSSSISIPLETISDGYDEGRSAQAETDQAYVDRF 94 (365)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~~~~~~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ 94 (365)
|||+++.+-+-|+ .||+.|.++|+ |++....++...+.+ +. ...... ....+ ++
T Consensus 1 m~ILvlgGTtE~r-----~la~~L~~~g~-v~~sv~t~~g~~~~~-~~-~~~~~v--~~G~l--------g~-------- 54 (249)
T PF02571_consen 1 MKILVLGGTTEGR-----KLAERLAEAGY-VIVSVATSYGGELLK-PE-LPGLEV--RVGRL--------GD-------- 54 (249)
T ss_pred CEEEEEechHHHH-----HHHHHHHhcCC-EEEEEEhhhhHhhhc-cc-cCCceE--EECCC--------CC--------
Confidence 6888887766554 78999999999 776655555444442 00 011111 00111 01
Q ss_pred HHHhHHHHHHHHHhcCCCcEEEEcCCCcc-------HHHHHHHhCCceEEEe
Q 036519 95 WQIGVQTLTELVERMNDVDCIVYDSFLPW-------ALDVAKKFGLTGAAFL 139 (365)
Q Consensus 95 ~~~~~~~l~~ll~~~~~pD~vv~D~~~~~-------a~~~A~~~giP~v~~~ 139 (365)
...+.+++.+- ++++|| |..-++ +..+|+++|||++.|.
T Consensus 55 ----~~~l~~~l~~~-~i~~vI-DATHPfA~~is~na~~a~~~~~ipylR~e 100 (249)
T PF02571_consen 55 ----EEGLAEFLREN-GIDAVI-DATHPFAAEISQNAIEACRELGIPYLRFE 100 (249)
T ss_pred ----HHHHHHHHHhC-CCcEEE-ECCCchHHHHHHHHHHHHhhcCcceEEEE
Confidence 23455566665 888877 433333 6788999999999863
No 152
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.05 E-value=0.91 Score=43.98 Aligned_cols=76 Identities=20% Similarity=0.284 Sum_probs=46.3
Q ss_pred hcccccccccccCChhhHHHHHHcCCCeeeccccC-chhhHHHHHHhHhcceeEecCCCCCcccHHHHHHHHHHHhcCHH
Q 036519 255 LAHEATGCFLTHCGWNSTIEALRLGVPMLAMPLWT-DQSTNSKYVMDVWKMGLKVPADEKGIVRREAIAHCIGEILEGDK 333 (365)
Q Consensus 255 L~~~~~~~~I~hgG~gs~~eal~~GvP~v~~P~~~-DQ~~nA~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~ 333 (365)
|...+++-..|. |+.|.++.|+.|||||.+|... -...-+-.+... |+|-.+.+ +.++-.+.--++=+|.+
T Consensus 835 LaDv~LDTplcn-GhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~-Gl~hliak------~~eEY~~iaV~Latd~~ 906 (966)
T KOG4626|consen 835 LADVCLDTPLCN-GHTTGMDVLWAGVPMVTMPGETLASRVAASLLTAL-GLGHLIAK------NREEYVQIAVRLATDKE 906 (966)
T ss_pred hhhhcccCcCcC-CcccchhhhccCCceeecccHHHHHHHHHHHHHHc-ccHHHHhh------hHHHHHHHHHHhhcCHH
Confidence 334444446665 7899999999999999999733 233334555666 88875553 34444333334545654
Q ss_pred HHHHH
Q 036519 334 WRNFA 338 (365)
Q Consensus 334 ~~~~a 338 (365)
+.++.
T Consensus 907 ~L~~l 911 (966)
T KOG4626|consen 907 YLKKL 911 (966)
T ss_pred HHHHH
Confidence 44443
No 153
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=85.84 E-value=1.6 Score=41.53 Aligned_cols=90 Identities=7% Similarity=0.068 Sum_probs=62.6
Q ss_pred CCCeEEe-ecc--hhhhhcccccccccccCC--hhhHHHHHHcCCCeeeccccCchhhHHHHHHhHhcceeEecCCCCCc
Q 036519 241 QKGLVVN-WCP--QLGVLAHEATGCFLTHCG--WNSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVWKMGLKVPADEKGI 315 (365)
Q Consensus 241 ~~~~~~~-~~p--~~~~L~~~~~~~~I~hgG--~gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~ 315 (365)
+|+.+.+ +.+ -..++..|++=+-|+||. ..++.||+.+|+|++..=..... ...+.. |-....
T Consensus 328 ~nvvly~~~~~~~l~~ly~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~~---~~~i~~----g~l~~~----- 395 (438)
T TIGR02919 328 DNVKLYPNITTQKIQELYQTCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAHN---RDFIAS----ENIFEH----- 395 (438)
T ss_pred CCcEEECCcChHHHHHHHHhccEEEEccccccHHHHHHHHHHcCCcEEEEecccCC---cccccC----CceecC-----
Confidence 5666554 555 335999999988889977 48999999999999887543221 112211 334443
Q ss_pred ccHHHHHHHHHHHhcCH-HHHHHHHHHH
Q 036519 316 VRREAIAHCIGEILEGD-KWRNFAKEAV 342 (365)
Q Consensus 316 ~~~~~l~~~i~~ll~~~-~~~~~a~~~~ 342 (365)
-+.+++.++|.++|+|+ .++++..+-.
T Consensus 396 ~~~~~m~~~i~~lL~d~~~~~~~~~~q~ 423 (438)
T TIGR02919 396 NEVDQLISKLKDLLNDPNQFRELLEQQR 423 (438)
T ss_pred CCHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 36899999999999998 5666655433
No 154
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=85.61 E-value=11 Score=32.71 Aligned_cols=91 Identities=14% Similarity=0.307 Sum_probs=56.5
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCccccccccCCCCCCCCeeEEEcCCCCCCCCCCCcCCHHHHHHH
Q 036519 14 LAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLHRDPSSSISIPLETISDGYDEGRSAQAETDQAYVDR 93 (365)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~~~~~~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~ 93 (365)
+++|+++.+-+-|+ .||+.|.++|++|++.+...... ... .+...+ ...+. +
T Consensus 2 ~~~IlvlgGT~egr-----~la~~L~~~g~~v~~Svat~~g~-~~~-----~~~~v~--~G~l~--------~------- 53 (248)
T PRK08057 2 MPRILLLGGTSEAR-----ALARALAAAGVDIVLSLAGRTGG-PAD-----LPGPVR--VGGFG--------G------- 53 (248)
T ss_pred CceEEEEechHHHH-----HHHHHHHhCCCeEEEEEccCCCC-ccc-----CCceEE--ECCCC--------C-------
Confidence 56788887766654 68999999999999876655444 221 122211 01110 1
Q ss_pred HHHHhHHHHHHHHHhcCCCcEEEEcCCCcc-------HHHHHHHhCCceEEEe
Q 036519 94 FWQIGVQTLTELVERMNDVDCIVYDSFLPW-------ALDVAKKFGLTGAAFL 139 (365)
Q Consensus 94 ~~~~~~~~l~~ll~~~~~pD~vv~D~~~~~-------a~~~A~~~giP~v~~~ 139 (365)
.+.+.+++.+- ++++|| |..-++ +..+|+++|||++.|.
T Consensus 54 -----~~~l~~~l~~~-~i~~VI-DATHPfA~~is~~a~~ac~~~~ipyiR~e 99 (248)
T PRK08057 54 -----AEGLAAYLREE-GIDLVI-DATHPYAAQISANAAAACRALGIPYLRLE 99 (248)
T ss_pred -----HHHHHHHHHHC-CCCEEE-ECCCccHHHHHHHHHHHHHHhCCcEEEEe
Confidence 23345555665 888776 533333 6788999999999964
No 155
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=85.61 E-value=9.5 Score=34.58 Aligned_cols=40 Identities=20% Similarity=0.190 Sum_probs=34.1
Q ss_pred CcEEEEEcC-CCCCChHHHHHHHHHHHhCCCeEEEEeCccc
Q 036519 14 LAHCLVLSY-PAQGHMNPLLQFSKRLEHNGIKVTLVTTYFI 53 (365)
Q Consensus 14 ~~~il~~~~-~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~ 53 (365)
++||+|+++ |+-|-..-.-++|-.|++.|.+|.+++++..
T Consensus 1 ~~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPA 41 (322)
T COG0003 1 MTRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPA 41 (322)
T ss_pred CcEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCC
Confidence 478888888 7889999999999999999988888877644
No 156
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=84.84 E-value=24 Score=30.97 Aligned_cols=112 Identities=15% Similarity=0.078 Sum_probs=58.5
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCccccccccCCCCCCCCeeEEEcCC-CCCCCCCCCcCCHHHHHHH
Q 036519 15 AHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLHRDPSSSISIPLETISD-GYDEGRSAQAETDQAYVDR 93 (365)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~~~~~~~~gi~~~~l~~-~~~~~~~~~~~~~~~~~~~ 93 (365)
||||+.---+. |.--+.+|+++|.+.| +|+++.+...+.-..........+....+.. +.. .+.-.+++..-...
T Consensus 1 M~ILlTNDDGi-~apGi~aL~~al~~~g-~V~VvAP~~eqSg~g~aiT~~~pl~~~~~~~~~~~--~y~v~GTPaDCV~l 76 (266)
T PRK13934 1 MKILVTNDDGV-HSPGLRLLYEFVSPLG-EVDVVAPETPKSATGLGITLHKPLRMYEVDLCGFK--VYATSGTPSDTIYL 76 (266)
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhCC-cEEEEccCCCCccccccccCCCCcEEEEeccCCcc--eEEeCCCHHHHHHH
Confidence 46665544333 3455678899998887 8988877665544432011112344444431 111 11222333333222
Q ss_pred HHHHhHHHHHHHHHhcCCCcEEEEc----------CCC-c---cHHHHHHHhCCceEEEec
Q 036519 94 FWQIGVQTLTELVERMNDVDCIVYD----------SFL-P---WALDVAKKFGLTGAAFLT 140 (365)
Q Consensus 94 ~~~~~~~~l~~ll~~~~~pD~vv~D----------~~~-~---~a~~~A~~~giP~v~~~~ 140 (365)
- +..+ .- +||+||+- ... . .|.+-|..+|||.+.++.
T Consensus 77 a-------l~~l--~~-~pDLViSGIN~G~NlG~d~v~ySGTVgAA~Ea~~~GIPsIAvS~ 127 (266)
T PRK13934 77 A-------TYGL--GR-KYDLVLSGINLGDNTSLQVILSSGTLGAAFQAALLGIPAVAYSA 127 (266)
T ss_pred H-------HHhc--cC-CCCeEEecCccCCCCCcCcccccHhHHHHHHHHhcCCCEEEEec
Confidence 1 1222 22 89999964 122 2 245566678999999876
No 157
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=84.81 E-value=19 Score=31.23 Aligned_cols=113 Identities=16% Similarity=0.124 Sum_probs=61.9
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCccccccccCCCCCCCCeeEEEcCCCCCCCCCCCcCCHHHHHHHH
Q 036519 15 AHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLHRDPSSSISIPLETISDGYDEGRSAQAETDQAYVDRF 94 (365)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~~~~~~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ 94 (365)
||||+.---+ =|.-=+-+|++.|+ .+++|+++.+...++-+.........+....+.. . .+.-.+++...
T Consensus 1 mrILlTNDDG-i~a~Gi~aL~~al~-~~~dV~VVAP~~~qSg~s~slTl~~Plr~~~~~~---~-~~av~GTPaDC---- 70 (252)
T COG0496 1 MRILLTNDDG-IHAPGIRALARALR-EGADVTVVAPDREQSGASHSLTLHEPLRVRQVDN---G-AYAVNGTPADC---- 70 (252)
T ss_pred CeEEEecCCc-cCCHHHHHHHHHHh-hCCCEEEEccCCCCcccccccccccCceeeEecc---c-eEEecCChHHH----
Confidence 4555443221 13333456788887 8999999999887766653111112233333322 0 11111233222
Q ss_pred HHHhHHHHHHHHHhcCCCcEEEEcC----------CCc---cHHHHHHHhCCceEEEecc
Q 036519 95 WQIGVQTLTELVERMNDVDCIVYDS----------FLP---WALDVAKKFGLTGAAFLTQ 141 (365)
Q Consensus 95 ~~~~~~~l~~ll~~~~~pD~vv~D~----------~~~---~a~~~A~~~giP~v~~~~~ 141 (365)
..-.+..++++. .||+||+-. ... .|.+=|..+|||.|.++-.
T Consensus 71 ---V~lal~~l~~~~-~pDLVvSGIN~G~Nlg~dv~ySGTVaaA~Ea~~~GipsIA~S~~ 126 (252)
T COG0496 71 ---VILGLNELLKEP-RPDLVVSGINAGANLGDDVIYSGTVAAAMEAALLGIPAIAISLA 126 (252)
T ss_pred ---HHHHHHHhccCC-CCCEEEeCccCCCccccceeeeehHHHHHHHHHcCccceeeeeh
Confidence 122355666665 799999752 222 2556667889999987665
No 158
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=84.40 E-value=27 Score=30.45 Aligned_cols=115 Identities=12% Similarity=0.100 Sum_probs=57.6
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCccccccccCCCCCCCCeeEEEcC-CCCCCCCCCCcCCHHHHHHH
Q 036519 15 AHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLHRDPSSSISIPLETIS-DGYDEGRSAQAETDQAYVDR 93 (365)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~~~~~~~~gi~~~~l~-~~~~~~~~~~~~~~~~~~~~ 93 (365)
||||+.--=+. |.--+..|+++|++ +|+|+++.+...+.-....-.....+....+. ++.....+.-.+++..-...
T Consensus 1 M~ILvtNDDGi-~apGl~aL~~~l~~-~~~V~VvAP~~~~Sg~g~sit~~~pl~~~~~~~~~~~~~~~~v~GTPaDcV~l 78 (253)
T PRK13933 1 MNILLTNDDGI-NAEGINTLAELLSK-YHEVIIVAPENQRSASSHSITIYEPIIIKEVKLEGINSKAYSISGTPADCVRV 78 (253)
T ss_pred CeEEEEcCCCC-CChhHHHHHHHHHh-CCcEEEEccCCCCccccccccCCCCeEEEeeccCCCCccEEEECCcHHHHHHH
Confidence 56666544332 22226778888965 68999888776655443201111223333332 10000011112233222211
Q ss_pred HHHHhHHHHHHHHHhcCCCcEEEEc----------CCCc---cHHHHHHHhCCceEEEec
Q 036519 94 FWQIGVQTLTELVERMNDVDCIVYD----------SFLP---WALDVAKKFGLTGAAFLT 140 (365)
Q Consensus 94 ~~~~~~~~l~~ll~~~~~pD~vv~D----------~~~~---~a~~~A~~~giP~v~~~~ 140 (365)
.+..++. - +||+||+- .+.. .|.+-|..+|||.+.++.
T Consensus 79 -------al~~l~~-~-~pDLVvSGIN~G~N~g~dv~ySGTVgAA~ea~~~GiPsiA~S~ 129 (253)
T PRK13933 79 -------ALDKLVP-D-NIDMVISGINKGLNIGNDILYSGTVSAAIEGAIYKVPSIAVSA 129 (253)
T ss_pred -------HHHHhcC-C-CCCEEEECCcCCCCCCcCCccchhHHHHHHHHHcCCCeEEEEe
Confidence 1223332 2 89999975 2222 256666788999998875
No 159
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=83.92 E-value=4.2 Score=38.47 Aligned_cols=90 Identities=18% Similarity=0.141 Sum_probs=55.1
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCccc----cccccCCCCCCCCeeEEEcCCCCCCCCCCCcCCHHHHH
Q 036519 16 HCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFI----SKSLHRDPSSSISIPLETISDGYDEGRSAQAETDQAYV 91 (365)
Q Consensus 16 ~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~----~~~v~~~~~~~~gi~~~~l~~~~~~~~~~~~~~~~~~~ 91 (365)
|+.++..+.. .+++++.|.+-|-+|..+++..- .+...+ .+ + .+.. ......++...
T Consensus 287 kv~v~g~~~~-----~~~l~~~l~elGmevv~~~t~~~~~~~~~~~~~------~~-----~-~~~~-~v~~~~dl~~~- 347 (422)
T TIGR02015 287 RVTVSGYEGS-----ELLVVRLLLESGADVPYVGTAIPRTAWGAEDKR------WL-----E-MLGV-EVKYRASLEDD- 347 (422)
T ss_pred eEEEEcCCcc-----HHHHHHHHHHCCCEEEEEecCCCCccccHHHHH------HH-----H-hcCC-CceeccCHHHH-
Confidence 7777777666 88999999999999999877632 222221 00 0 0100 00001122111
Q ss_pred HHHHHHhHHHHHHHHHhcCCCcEEEEcCCCccHHHHHHHhCCceEEEe
Q 036519 92 DRFWQIGVQTLTELVERMNDVDCIVYDSFLPWALDVAKKFGLTGAAFL 139 (365)
Q Consensus 92 ~~~~~~~~~~l~~ll~~~~~pD~vv~D~~~~~a~~~A~~~giP~v~~~ 139 (365)
+ +.+++. +||++|... -+..+|+++|||++.+.
T Consensus 348 ----------~-~~l~~~-~pDllig~s---~~~~~A~k~gIP~vr~g 380 (422)
T TIGR02015 348 ----------M-EAVLEF-EPDLAIGTT---PLVQFAKEHGIPALYFT 380 (422)
T ss_pred ----------H-HHHhhC-CCCEEEcCC---cchHHHHHcCCCEEEec
Confidence 1 344555 999999873 36778999999999854
No 160
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=83.91 E-value=23 Score=29.88 Aligned_cols=110 Identities=13% Similarity=0.142 Sum_probs=66.6
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCccccccccCCCCCCCCeeEEEcCCCCCCCCCCCcCCHHHHHHH
Q 036519 14 LAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLHRDPSSSISIPLETISDGYDEGRSAQAETDQAYVDR 93 (365)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~~~~~~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~ 93 (365)
|+-|++..+|+.|-..-.-+||++|.+++|+|...+.+...-..-. +.++- .-..+.+.
T Consensus 1 mpLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~~D--------------Eslpi-------~ke~yres 59 (261)
T COG4088 1 MPLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGILWD--------------ESLPI-------LKEVYRES 59 (261)
T ss_pred CceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhheecc--------------cccch-------HHHHHHHH
Confidence 4567788889999999999999999999999876554322211110 00110 11233333
Q ss_pred HHHHhHHHHHHHHHhcCCCcEEEEcCCCcc------HHHHHHHhCCceEEEecccHHHHHH
Q 036519 94 FWQIGVQTLTELVERMNDVDCIVYDSFLPW------ALDVAKKFGLTGAAFLTQSCTVASI 148 (365)
Q Consensus 94 ~~~~~~~~l~~ll~~~~~pD~vv~D~~~~~------a~~~A~~~giP~v~~~~~~~~~~~~ 148 (365)
+.......+. .++ +--+||+|..-+. -...|.++..+|...+.......++
T Consensus 60 ~~ks~~rlld---Sal-kn~~VIvDdtNYyksmRrqL~ceak~~~tt~ciIyl~~plDtc~ 116 (261)
T COG4088 60 FLKSVERLLD---SAL-KNYLVIVDDTNYYKSMRRQLACEAKERKTTWCIIYLRTPLDTCL 116 (261)
T ss_pred HHHHHHHHHH---HHh-cceEEEEecccHHHHHHHHHHHHHHhcCCceEEEEEccCHHHHH
Confidence 4433332333 333 3348999965543 3456788999999887765544444
No 161
>PRK05973 replicative DNA helicase; Provisional
Probab=83.23 E-value=4 Score=35.19 Aligned_cols=43 Identities=14% Similarity=0.169 Sum_probs=36.6
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCcccccccc
Q 036519 16 HCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLH 58 (365)
Q Consensus 16 ~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~ 58 (365)
-+++...|+.|-..=.+.++..-+++|..|.|++.+...+.+.
T Consensus 66 l~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~~i~ 108 (237)
T PRK05973 66 LVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQDVR 108 (237)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHH
Confidence 4677888999999999999999888999999999887665544
No 162
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=82.99 E-value=9.6 Score=34.96 Aligned_cols=103 Identities=11% Similarity=-0.045 Sum_probs=66.1
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEeCccccccccCCCCCCCCeeEEE-cCCCCCCCCCCCcCCHHHHH
Q 036519 15 AHCLVLSYPAQGHMNPLLQFSKRLEHN--GIKVTLVTTYFISKSLHRDPSSSISIPLET-ISDGYDEGRSAQAETDQAYV 91 (365)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~la~~L~~~--Gh~Vt~~~~~~~~~~v~~~~~~~~gi~~~~-l~~~~~~~~~~~~~~~~~~~ 91 (365)
||||++-..+.|++.=..++.+.|+++ +.+|++++.+.+.+.++. . +.++-+. ++. .. ....+
T Consensus 1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~~--~--P~vd~vi~~~~--~~-------~~~~~- 66 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLSR--M--PEVNEAIPMPL--GH-------GALEI- 66 (348)
T ss_pred CcEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHhc--C--CccCEEEeccc--cc-------chhhh-
Confidence 689999999999999999999999995 899999999988888774 1 3333222 221 10 00000
Q ss_pred HHHHHHhHHHHHHHHHhcCCCcEEEEcCCCccHHHHHHHhCCceEE
Q 036519 92 DRFWQIGVQTLTELVERMNDVDCIVYDSFLPWALDVAKKFGLTGAA 137 (365)
Q Consensus 92 ~~~~~~~~~~l~~ll~~~~~pD~vv~D~~~~~a~~~A~~~giP~v~ 137 (365)
. ... .+...+++. +.|++|.=....-...++...|+|.-.
T Consensus 67 ---~-~~~-~l~~~lr~~-~yD~vidl~~~~~s~~l~~~~~~~~ri 106 (348)
T PRK10916 67 ---G-ERR-RLGHSLREK-RYDRAYVLPNSFKSALVPFFAGIPHRT 106 (348)
T ss_pred ---H-HHH-HHHHHHHhc-CCCEEEECCCcHHHHHHHHHcCCCeEe
Confidence 0 001 122234444 889888543334456677777877643
No 163
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=82.47 E-value=1.4 Score=36.53 Aligned_cols=99 Identities=14% Similarity=0.202 Sum_probs=51.0
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEeC-ccccccccCCCCCCCCeeEEEcCCCCCCCCCCCcCCHHHHHHH
Q 036519 17 CLVLSYPAQGHMNPLLQFSKRLEHN--GIKVTLVTT-YFISKSLHRDPSSSISIPLETISDGYDEGRSAQAETDQAYVDR 93 (365)
Q Consensus 17 il~~~~~~~GH~~p~l~la~~L~~~--Gh~Vt~~~~-~~~~~~v~~~~~~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~ 93 (365)
|.|- ..+-|-++-..+|+++|.++ |++|.+-++ +...+.+.+ .....+....+|-+++
T Consensus 24 iWiH-a~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~--~~~~~v~~~~~P~D~~---------------- 84 (186)
T PF04413_consen 24 IWIH-AASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARK--LLPDRVDVQYLPLDFP---------------- 84 (186)
T ss_dssp EEEE--SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHG--G-GGG-SEEE---SSH----------------
T ss_pred EEEE-ECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHH--hCCCCeEEEEeCccCH----------------
Confidence 4443 56789999999999999987 889888765 444444432 0002333333442222
Q ss_pred HHHHhHHHHHHHHHhcCCCcEEEEcCCCcc--HHHHHHHhCCceEEEecc
Q 036519 94 FWQIGVQTLTELVERMNDVDCIVYDSFLPW--ALDVAKKFGLTGAAFLTQ 141 (365)
Q Consensus 94 ~~~~~~~~l~~ll~~~~~pD~vv~D~~~~~--a~~~A~~~giP~v~~~~~ 141 (365)
..++..++.+ +||++|.--...| -...|++.|||++.+.-.
T Consensus 85 ------~~~~rfl~~~-~P~~~i~~EtElWPnll~~a~~~~ip~~LvNar 127 (186)
T PF04413_consen 85 ------WAVRRFLDHW-RPDLLIWVETELWPNLLREAKRRGIPVVLVNAR 127 (186)
T ss_dssp ------HHHHHHHHHH---SEEEEES----HHHHHH-----S-EEEEEE-
T ss_pred ------HHHHHHHHHh-CCCEEEEEccccCHHHHHHHhhcCCCEEEEeee
Confidence 2356677778 8888885433344 367788889999987654
No 164
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=82.42 E-value=14 Score=33.62 Aligned_cols=38 Identities=21% Similarity=0.225 Sum_probs=26.9
Q ss_pred HHHHHHHhcCCCcEEEEcCC--CccHHHHHHHhCCceEEEe
Q 036519 101 TLTELVERMNDVDCIVYDSF--LPWALDVAKKFGLTGAAFL 139 (365)
Q Consensus 101 ~l~~ll~~~~~pD~vv~D~~--~~~a~~~A~~~giP~v~~~ 139 (365)
.+..++++. +||+|.+-.. ...+..++++.|+|++...
T Consensus 73 ~~~~~~~~~-~~dvvh~~~~~~~~~~~~~~~~~~~p~i~~~ 112 (367)
T cd05844 73 QLRRLLRRH-RPDLVHAHFGFDGVYALPLARRLGVPLVVTF 112 (367)
T ss_pred HHHHHHHhh-CCCEEEeccCchHHHHHHHHHHcCCCEEEEE
Confidence 445577777 9999987422 2346778899999998743
No 165
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=82.39 E-value=6.3 Score=40.66 Aligned_cols=94 Identities=20% Similarity=0.216 Sum_probs=59.9
Q ss_pred hhhccccccccccc---CChh-hHHHHHHcCCC---eeecc-ccCchhhHHHHHHhHhc-ceeEecCCCCCcccHHHHHH
Q 036519 253 GVLAHEATGCFLTH---CGWN-STIEALRLGVP---MLAMP-LWTDQSTNSKYVMDVWK-MGLKVPADEKGIVRREAIAH 323 (365)
Q Consensus 253 ~~L~~~~~~~~I~h---gG~g-s~~eal~~GvP---~v~~P-~~~DQ~~nA~~v~~~~G-~G~~~~~~~~~~~~~~~l~~ 323 (365)
.++..+|+ ++.- -|+| +..|++++|+| .++++ +.+ .+. .+ | -|+.+++ .+.+++++
T Consensus 371 aly~~ADv--fvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~G----~~~---~l-~~~allVnP-----~D~~~lA~ 435 (797)
T PLN03063 371 ALYAITDV--MLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFAG----AGQ---SL-GAGALLVNP-----WNITEVSS 435 (797)
T ss_pred HHHHhCCE--EEeCccccccCcchhhHheeecCCCCCEEeeCCcC----chh---hh-cCCeEEECC-----CCHHHHHH
Confidence 58889999 7754 3775 56699999999 44444 322 111 13 4 5788884 58999999
Q ss_pred HHHHHhc-CHHHHHH-HHHHHHc--CCCcHHHHHHHHHHHHh
Q 036519 324 CIGEILE-GDKWRNF-AKEAVAK--GGSSDKNIDDFVANLIS 361 (365)
Q Consensus 324 ~i~~ll~-~~~~~~~-a~~~~~~--~g~s~~~~~~~~~~i~~ 361 (365)
+|.++|+ +++.|+. .+++.+- .-+...-.+.|++.+.+
T Consensus 436 AI~~aL~m~~~er~~r~~~~~~~v~~~~~~~Wa~~fl~~l~~ 477 (797)
T PLN03063 436 AIKEALNMSDEERETRHRHNFQYVKTHSAQKWADDFMSELND 477 (797)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHH
Confidence 9999998 5444333 3333221 23455566666666553
No 166
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=82.37 E-value=11 Score=35.90 Aligned_cols=87 Identities=14% Similarity=0.132 Sum_probs=57.3
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCccccccccCCCCCCCCeeEEEcCCCCCCCCCCCcCCHHHHHHH
Q 036519 14 LAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLHRDPSSSISIPLETISDGYDEGRSAQAETDQAYVDR 93 (365)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~~~~~~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~ 93 (365)
..|+++...+ ...+.+++.|.+-|.+|..+.+....+..++ ++.+ . ....+.
T Consensus 311 Gkrvai~~~~-----~~~~~l~~~l~elGm~v~~~~~~~~~~~~~~------------~~~~--~---~~~~D~------ 362 (432)
T TIGR01285 311 GKKVAIAAEP-----DLLAAWATFFTSMGAQIVAAVTTTGSPLLQK------------LPVE--T---VVIGDL------ 362 (432)
T ss_pred CCEEEEEcCH-----HHHHHHHHHHHHCCCEEEEEEeCCCCHHHHh------------CCcC--c---EEeCCH------
Confidence 4667776533 4778999999999999988776655433221 1100 0 001122
Q ss_pred HHHHhHHHHHHHHHhcCCCcEEEEcCCCccHHHHHHHhCCceEEE
Q 036519 94 FWQIGVQTLTELVERMNDVDCIVYDSFLPWALDVAKKFGLTGAAF 138 (365)
Q Consensus 94 ~~~~~~~~l~~ll~~~~~pD~vv~D~~~~~a~~~A~~~giP~v~~ 138 (365)
..+.+++++. +||+++... ....+|+++|||++.+
T Consensus 363 ------~~l~~~i~~~-~~dliig~s---~~k~~A~~l~ip~ir~ 397 (432)
T TIGR01285 363 ------EDLEDLACAA-GADLLITNS---HGRALAQRLALPLVRA 397 (432)
T ss_pred ------HHHHHHHhhc-CCCEEEECc---chHHHHHHcCCCEEEe
Confidence 1345666666 999999884 4688999999999874
No 167
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=82.13 E-value=6.8 Score=27.90 Aligned_cols=79 Identities=19% Similarity=0.304 Sum_probs=48.3
Q ss_pred HHHHHHHHHhCCCeEEEEeCccccccccCCCCCCCCeeEEEcCCCCCCCCCCCcCCHHHHHHHHHHHhHHHHHHHHHhcC
Q 036519 31 LLQFSKRLEHNGIKVTLVTTYFISKSLHRDPSSSISIPLETISDGYDEGRSAQAETDQAYVDRFWQIGVQTLTELVERMN 110 (365)
Q Consensus 31 ~l~la~~L~~~Gh~Vt~~~~~~~~~~v~~~~~~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~ 110 (365)
++++++.|.+.|+++. .|+...+.+++ .|+++..+...+.. +.. .+.++++.-
T Consensus 2 ~~~~~~~l~~lG~~i~--AT~gTa~~L~~-----~Gi~~~~~~~ki~~------~~~-------------~i~~~i~~g- 54 (90)
T smart00851 2 LVELAKRLAELGFELV--ATGGTAKFLRE-----AGLPVKTLHPKVHG------GIL-------------AILDLIKNG- 54 (90)
T ss_pred HHHHHHHHHHCCCEEE--EccHHHHHHHH-----CCCcceeccCCCCC------CCH-------------HHHHHhcCC-
Confidence 4789999999999984 44455666765 67765432111111 010 134444444
Q ss_pred CCcEEEEcCC---------CccHHHHHHHhCCceE
Q 036519 111 DVDCIVYDSF---------LPWALDVAKKFGLTGA 136 (365)
Q Consensus 111 ~pD~vv~D~~---------~~~a~~~A~~~giP~v 136 (365)
++|+||.-.. ...-+.+|...+||++
T Consensus 55 ~id~VIn~~~~~~~~~~~d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 55 EIDLVINTLYPLGAQPHEDGKALRRAAENIDIPGA 89 (90)
T ss_pred CeEEEEECCCcCcceeccCcHHHHHHHHHcCCCee
Confidence 8999997422 1235678889999986
No 168
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=81.79 E-value=1.6 Score=31.57 Aligned_cols=84 Identities=14% Similarity=0.209 Sum_probs=49.9
Q ss_pred HHHHHHHHHhCCCeEEEEeCccccccccCCCCCCCCeeEEEcCCCCCCCCCCCcCCHHHHHHHHHHHhHHHHHHHHHhcC
Q 036519 31 LLQFSKRLEHNGIKVTLVTTYFISKSLHRDPSSSISIPLETISDGYDEGRSAQAETDQAYVDRFWQIGVQTLTELVERMN 110 (365)
Q Consensus 31 ~l~la~~L~~~Gh~Vt~~~~~~~~~~v~~~~~~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~ 110 (365)
++++|+.|.+.|+++ +.|+...+.+++ .|+++..+..-... .....++. .+.++++.-
T Consensus 2 ~~~~a~~l~~lG~~i--~AT~gTa~~L~~-----~Gi~~~~v~~~~~~-~~~~~g~~-------------~i~~~i~~~- 59 (95)
T PF02142_consen 2 IVPLAKRLAELGFEI--YATEGTAKFLKE-----HGIEVTEVVNKIGE-GESPDGRV-------------QIMDLIKNG- 59 (95)
T ss_dssp HHHHHHHHHHTTSEE--EEEHHHHHHHHH-----TT--EEECCEEHST-G-GGTHCH-------------HHHHHHHTT-
T ss_pred HHHHHHHHHHCCCEE--EEChHHHHHHHH-----cCCCceeeeeeccc-CccCCchh-------------HHHHHHHcC-
Confidence 578999999999654 566666666766 78886666421111 00001111 455666666
Q ss_pred CCcEEEEcCCCcc---------HHHHHHHhCCceE
Q 036519 111 DVDCIVYDSFLPW---------ALDVAKKFGLTGA 136 (365)
Q Consensus 111 ~pD~vv~D~~~~~---------a~~~A~~~giP~v 136 (365)
++|+||....... -+.+|...+||++
T Consensus 60 ~IdlVIn~~~~~~~~~~~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 60 KIDLVINTPYPFSDQEHTDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp SEEEEEEE--THHHHHTHHHHHHHHHHHHTTSHEE
T ss_pred CeEEEEEeCCCCcccccCCcHHHHHHHHHcCCCCc
Confidence 9999997633221 2678888899986
No 169
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=81.58 E-value=1.7 Score=35.87 Aligned_cols=45 Identities=16% Similarity=0.206 Sum_probs=37.9
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCccccccccC
Q 036519 14 LAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLHR 59 (365)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~~ 59 (365)
++||++...|+.|=+. ...+.+.|+++|++|.++-+++..+++..
T Consensus 1 ~k~Ill~vtGsiaa~~-~~~li~~L~~~g~~V~vv~T~~A~~fi~~ 45 (182)
T PRK07313 1 MKNILLAVSGSIAAYK-AADLTSQLTKRGYQVTVLMTKAATKFITP 45 (182)
T ss_pred CCEEEEEEeChHHHHH-HHHHHHHHHHCCCEEEEEEChhHHHHcCH
Confidence 4678888888777665 89999999999999999999988777763
No 170
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=81.32 E-value=19 Score=33.11 Aligned_cols=49 Identities=14% Similarity=0.131 Sum_probs=43.9
Q ss_pred CCCCcEEEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEeCccccccccC
Q 036519 11 SSKLAHCLVLSYPAQGHMNPLLQFSKRLEHN--GIKVTLVTTYFISKSLHR 59 (365)
Q Consensus 11 ~~~~~~il~~~~~~~GH~~p~l~la~~L~~~--Gh~Vt~~~~~~~~~~v~~ 59 (365)
.+.++|||++-....|++.=..++.+.|+++ +.+|++++.+.+.+.++.
T Consensus 2 ~~~~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~~~ 52 (352)
T PRK10422 2 DKPFRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILSE 52 (352)
T ss_pred CCCCceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHhcc
Confidence 3557899999999999999999999999997 799999999988887774
No 171
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=81.15 E-value=4.6 Score=28.12 Aligned_cols=35 Identities=14% Similarity=0.100 Sum_probs=31.9
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEE
Q 036519 14 LAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLV 48 (365)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~ 48 (365)
+.-++++..+...|....-.+|+.|.++|+.|...
T Consensus 15 ~k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~ 49 (79)
T PF12146_consen 15 PKAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAY 49 (79)
T ss_pred CCEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 46789999999999999999999999999999854
No 172
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=80.87 E-value=6.8 Score=37.03 Aligned_cols=95 Identities=19% Similarity=0.164 Sum_probs=53.4
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCccccccccCCCCCCCCeeEEEcCCCCCCCCCCCcCCHHHHHHHHH
Q 036519 16 HCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLHRDPSSSISIPLETISDGYDEGRSAQAETDQAYVDRFW 95 (365)
Q Consensus 16 ~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~~~~~~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 95 (365)
|++++..+.. .+.+++.|.+-|-+|..++++.......+ ..... ++. ... ......++...
T Consensus 282 kv~v~g~~~~-----~~~la~~L~elGmevv~~~t~~~~~~~~~-----~~~~~--l~~-~~~-~v~~~~~~~~~----- 342 (416)
T cd01980 282 RVLVSGYEGN-----ELLVARLLIESGAEVPYVSTSIPKTSLSA-----PDYEW--LSA-LGV-EVRYRKSLEDD----- 342 (416)
T ss_pred eEEEECCCch-----hHHHHHHHHHcCCEEEEEecCCCChhhhH-----HHHHH--HHh-cCC-ccccCCCHHHH-----
Confidence 5656554443 66799999999999999888642211111 00000 000 000 00001122111
Q ss_pred HHhHHHHHHHHHhcCCCcEEEEcCCCccHHHHHHHhCCceEEEec
Q 036519 96 QIGVQTLTELVERMNDVDCIVYDSFLPWALDVAKKFGLTGAAFLT 140 (365)
Q Consensus 96 ~~~~~~l~~ll~~~~~pD~vv~D~~~~~a~~~A~~~giP~v~~~~ 140 (365)
.+.+++. +||++|.. .-+..+|+++|||.+.+..
T Consensus 343 -------~~~~~~~-~pDl~Ig~---s~~~~~a~~~giP~~r~~~ 376 (416)
T cd01980 343 -------IAAVEEY-RPDLAIGT---TPLVQYAKEKGIPALYYTN 376 (416)
T ss_pred -------HHHHhhc-CCCEEEeC---ChhhHHHHHhCCCEEEecC
Confidence 2334455 99999977 3378899999999988543
No 173
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=80.72 E-value=9.5 Score=31.97 Aligned_cols=83 Identities=12% Similarity=0.077 Sum_probs=47.6
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCC--CeEEEEeCc-cc---cccccCCCCCCCCeeEEEcCCCCCCCCCCCcCCH
Q 036519 14 LAHCLVLSYPAQGHMNPLLQFSKRLEHNG--IKVTLVTTY-FI---SKSLHRDPSSSISIPLETISDGYDEGRSAQAETD 87 (365)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~la~~L~~~G--h~Vt~~~~~-~~---~~~v~~~~~~~~gi~~~~l~~~~~~~~~~~~~~~ 87 (365)
||||++++.+...-+ .+|.+++.+.+ ++|.++.+. .. .+...+ .|+++..++..-.. .
T Consensus 1 m~ki~vl~sg~gs~~---~~ll~~~~~~~~~~~I~~vvs~~~~~~~~~~a~~-----~gIp~~~~~~~~~~----~---- 64 (200)
T PRK05647 1 MKRIVVLASGNGSNL---QAIIDACAAGQLPAEIVAVISDRPDAYGLERAEA-----AGIPTFVLDHKDFP----S---- 64 (200)
T ss_pred CceEEEEEcCCChhH---HHHHHHHHcCCCCcEEEEEEecCccchHHHHHHH-----cCCCEEEECccccC----c----
Confidence 589999998774333 35666676653 788875443 22 223343 67888776521110 0
Q ss_pred HHHHHHHHHHhHHHHHHHHHhcCCCcEEEEcCC
Q 036519 88 QAYVDRFWQIGVQTLTELVERMNDVDCIVYDSF 120 (365)
Q Consensus 88 ~~~~~~~~~~~~~~l~~ll~~~~~pD~vv~D~~ 120 (365)
.......+.+.++++ +||++|+-.+
T Consensus 65 -------~~~~~~~~~~~l~~~-~~D~iv~~~~ 89 (200)
T PRK05647 65 -------REAFDAALVEALDAY-QPDLVVLAGF 89 (200)
T ss_pred -------hhHhHHHHHHHHHHh-CcCEEEhHHh
Confidence 011122455667777 9999997533
No 174
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=79.54 E-value=2.2 Score=35.53 Aligned_cols=46 Identities=13% Similarity=0.093 Sum_probs=36.3
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCcccccccc
Q 036519 13 KLAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLH 58 (365)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~ 58 (365)
+.+||++-..|+.|=+.-.+.++++|+++||+|.++.++...+.+.
T Consensus 4 ~~k~IllgVTGsiaa~k~a~~lir~L~k~G~~V~vv~T~aA~~~~~ 49 (196)
T PRK08305 4 KGKRIGFGLTGSHCTYDEVMPEIEKLVDEGAEVTPIVSYTVQTTDT 49 (196)
T ss_pred CCCEEEEEEcCHHHHHHHHHHHHHHHHhCcCEEEEEECHhHHHHhh
Confidence 4567887777766655547999999999999999999887776554
No 175
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=79.40 E-value=18 Score=31.87 Aligned_cols=82 Identities=22% Similarity=0.348 Sum_probs=54.5
Q ss_pred CCCeEEeecc---hhhhhccccccccccc---CChh-hHHHHHHcCCCeeeccccCchhhHHHHHHhHhcceeEecCCCC
Q 036519 241 QKGLVVNWCP---QLGVLAHEATGCFLTH---CGWN-STIEALRLGVPMLAMPLWTDQSTNSKYVMDVWKMGLKVPADEK 313 (365)
Q Consensus 241 ~~~~~~~~~p---~~~~L~~~~~~~~I~h---gG~g-s~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~ 313 (365)
+++....+++ ...++..+++ ++.- .|.| ++.|++++|+|+|.... ......+.+. +.|. +...
T Consensus 257 ~~v~~~g~~~~~~~~~~~~~~~~--~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~----~~~~e~~~~~-~~g~-~~~~-- 326 (381)
T COG0438 257 DNVKFLGYVPDEELAELLASADV--FVLPSLSEGFGLVLLEAMAAGTPVIASDV----GGIPEVVEDG-ETGL-LVPP-- 326 (381)
T ss_pred CcEEEecccCHHHHHHHHHhCCE--EEeccccccchHHHHHHHhcCCcEEECCC----CChHHHhcCC-CceE-ecCC--
Confidence 5566677877 2236777877 6666 3554 35999999999976654 3333344444 3466 4432
Q ss_pred CcccHHHHHHHHHHHhcCHHH
Q 036519 314 GIVRREAIAHCIGEILEGDKW 334 (365)
Q Consensus 314 ~~~~~~~l~~~i~~ll~~~~~ 334 (365)
.+.+++.+++..++++.+.
T Consensus 327 --~~~~~~~~~i~~~~~~~~~ 345 (381)
T COG0438 327 --GDVEELADALEQLLEDPEL 345 (381)
T ss_pred --CCHHHHHHHHHHHhcCHHH
Confidence 2689999999999988633
No 176
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=78.40 E-value=5.9 Score=29.82 Aligned_cols=37 Identities=19% Similarity=0.284 Sum_probs=33.2
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCc
Q 036519 15 AHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTY 51 (365)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~ 51 (365)
.|+++.+.+..-|-.-...++..|.++||+|.++...
T Consensus 1 ~~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~ 37 (121)
T PF02310_consen 1 IRVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDAN 37 (121)
T ss_dssp -EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred CEEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCC
Confidence 3789999999999999999999999999999988544
No 177
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=77.74 E-value=6.1 Score=37.92 Aligned_cols=98 Identities=14% Similarity=0.087 Sum_probs=59.4
Q ss_pred Eeecchhh---hhcccccccccc---cCCh-hhHHHHHHcCCC----eeeccccCchhhHHHHHHhHhcceeEecCCCCC
Q 036519 246 VNWCPQLG---VLAHEATGCFLT---HCGW-NSTIEALRLGVP----MLAMPLWTDQSTNSKYVMDVWKMGLKVPADEKG 314 (365)
Q Consensus 246 ~~~~p~~~---~L~~~~~~~~I~---hgG~-gs~~eal~~GvP----~v~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~ 314 (365)
.+++++.+ ++..||+ +|. +-|+ .++.||+++|+| +|+--..+ . .+.. .-|+.+++
T Consensus 346 ~g~v~~~el~~~y~~aDv--~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G----~---~~~~-~~g~lv~p---- 411 (460)
T cd03788 346 YRSLPREELAALYRAADV--ALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAG----A---AEEL-SGALLVNP---- 411 (460)
T ss_pred eCCCCHHHHHHHHHhccE--EEeCccccccCcccceeEEEecCCCceEEEecccc----c---hhhc-CCCEEECC----
Confidence 35666554 7899999 764 3454 567899999999 44432221 1 1113 44667774
Q ss_pred cccHHHHHHHHHHHhcCH-HHHHHH----HHHHHcCCCcHHHHHHHHHHH
Q 036519 315 IVRREAIAHCIGEILEGD-KWRNFA----KEAVAKGGSSDKNIDDFVANL 359 (365)
Q Consensus 315 ~~~~~~l~~~i~~ll~~~-~~~~~a----~~~~~~~g~s~~~~~~~~~~i 359 (365)
.+.++++++|.++++++ +-+++. ++.. +.-+...-++.+++.+
T Consensus 412 -~d~~~la~ai~~~l~~~~~e~~~~~~~~~~~v-~~~~~~~w~~~~l~~l 459 (460)
T cd03788 412 -YDIDEVADAIHRALTMPLEERRERHRKLREYV-RTHDVQAWANSFLDDL 459 (460)
T ss_pred -CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHhh
Confidence 47999999999999864 222222 2222 2345555666666543
No 178
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=77.64 E-value=2.3 Score=35.10 Aligned_cols=45 Identities=18% Similarity=0.138 Sum_probs=38.5
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHh-CCCeEEEEeCccccccccC
Q 036519 14 LAHCLVLSYPAQGHMNPLLQFSKRLEH-NGIKVTLVTTYFISKSLHR 59 (365)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~la~~L~~-~Gh~Vt~~~~~~~~~~v~~ 59 (365)
|+||++...|+-| ..-...++++|.+ .|++|.++.+++...++..
T Consensus 1 ~k~IllgVTGsia-a~ka~~l~~~L~k~~g~~V~vv~T~~A~~fv~~ 46 (185)
T PRK06029 1 MKRLIVGISGASG-AIYGVRLLQVLRDVGEIETHLVISQAARQTLAH 46 (185)
T ss_pred CCEEEEEEECHHH-HHHHHHHHHHHHhhcCCeEEEEECHHHHHHHHH
Confidence 5688888888777 6779999999999 5999999999988888773
No 179
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=77.59 E-value=57 Score=29.81 Aligned_cols=126 Identities=15% Similarity=0.039 Sum_probs=79.8
Q ss_pred cCCCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCccc---cccccCCCCCCCCeeEEEcCCCCCCCCCCCcC-
Q 036519 10 ASSKLAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFI---SKSLHRDPSSSISIPLETISDGYDEGRSAQAE- 85 (365)
Q Consensus 10 ~~~~~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~---~~~v~~~~~~~~gi~~~~l~~~~~~~~~~~~~- 85 (365)
...++.|+.++..|--||--+|.-=|..|++.|++|.+++.-+. .+.++. ++|.++.++. ++. .....
T Consensus 8 ~~~~k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p~e~l~~h-----prI~ih~m~~-l~~--~~~~p~ 79 (444)
T KOG2941|consen 8 NKSKKKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIPLEELLNH-----PRIRIHGMPN-LPF--LQGGPR 79 (444)
T ss_pred cccccceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecCCCChHHHhcC-----CceEEEeCCC-Ccc--cCCCch
Confidence 34557789999999999999999999999999999999886544 333443 8899999973 221 11122
Q ss_pred CHHHHHHHHHHHhHHHHHHHHHhcCCCcEEEEc-CCCccHH----HHHHHhCCceEEEecccHHH
Q 036519 86 TDQAYVDRFWQIGVQTLTELVERMNDVDCIVYD-SFLPWAL----DVAKKFGLTGAAFLTQSCTV 145 (365)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~ll~~~~~pD~vv~D-~~~~~a~----~~A~~~giP~v~~~~~~~~~ 145 (365)
-+...++.+...+. .+-.++. +.++|.|+.- .-+.+.. ....-.|..+++=|....+.
T Consensus 80 ~~~l~lKvf~Qfl~-Ll~aL~~-~~~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDWHNy~Ys 142 (444)
T KOG2941|consen 80 VLFLPLKVFWQFLS-LLWALFV-LRPPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDWHNYGYS 142 (444)
T ss_pred hhhhHHHHHHHHHH-HHHHHHh-ccCCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEehhhHHH
Confidence 12223333333322 3334444 3388888765 2333333 33345588888877766554
No 180
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=77.48 E-value=7.9 Score=36.77 Aligned_cols=99 Identities=16% Similarity=0.121 Sum_probs=55.8
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCccccccccCCCCCCCCeeEEEcCCCCCCCCCCCcCCHHHHHH
Q 036519 13 KLAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLHRDPSSSISIPLETISDGYDEGRSAQAETDQAYVD 92 (365)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~~~~~~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~ 92 (365)
+..+|+++..+ .-.+.+++.|.+.|-+|..+.+....+...+ .+.+..-..+... ..-...+.
T Consensus 298 ~gk~v~i~~~~-----~~~~~l~~~L~e~G~~v~~v~~~~~~~~~~~------~~~~~~~~~~~~~-~~v~~~d~----- 360 (428)
T cd01965 298 GGKRVAIAGDP-----DLLLGLSRFLLEMGAEPVAAVTGTDNPPFEK------RMELLASLEGIPA-EVVFVGDL----- 360 (428)
T ss_pred cCCEEEEEcCh-----HHHHHHHHHHHHcCCcceEEEEcCCCchhHH------HHHHhhhhcCCCc-eEEECCCH-----
Confidence 35677776433 3567899999999999887665433322221 0110000000000 00000111
Q ss_pred HHHHHhHHHHHHHHHhcCCCcEEEEcCCCccHHHHHHHhCCceEEEe
Q 036519 93 RFWQIGVQTLTELVERMNDVDCIVYDSFLPWALDVAKKFGLTGAAFL 139 (365)
Q Consensus 93 ~~~~~~~~~l~~ll~~~~~pD~vv~D~~~~~a~~~A~~~giP~v~~~ 139 (365)
..+.+.+++. +||+||.+.. ...+|+++|+|++.+.
T Consensus 361 -------~el~~~i~~~-~pdliig~~~---~~~~a~~~~ip~i~~~ 396 (428)
T cd01965 361 -------WDLESLAKEE-PVDLLIGNSH---GRYLARDLGIPLVRVG 396 (428)
T ss_pred -------HHHHHHhhcc-CCCEEEECch---hHHHHHhcCCCEEEec
Confidence 2345566666 8999999954 5789999999998643
No 181
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=77.43 E-value=26 Score=32.35 Aligned_cols=45 Identities=9% Similarity=0.023 Sum_probs=27.4
Q ss_pred ccccCCh--hhHHHHHHcCCCeeeccccCchhhHHHHHHhHhcceeEec
Q 036519 263 FLTHCGW--NSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVWKMGLKVP 309 (365)
Q Consensus 263 ~I~hgG~--gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~~~ 309 (365)
++..+|. ..-...++...=+++.|...|.+.++. +|.+ .+|+-+-
T Consensus 262 v~~~~~~~~~~~~~~~~~~aDv~v~ps~~e~~g~~~-lEA~-a~G~PvI 308 (388)
T TIGR02149 262 IIWINKMLPKEELVELLSNAEVFVCPSIYEPLGIVN-LEAM-ACGTPVV 308 (388)
T ss_pred eEEecCCCCHHHHHHHHHhCCEEEeCCccCCCChHH-HHHH-HcCCCEE
Confidence 3444553 233455666777888888777776653 6666 7774443
No 182
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=77.40 E-value=48 Score=28.89 Aligned_cols=113 Identities=11% Similarity=0.075 Sum_probs=57.6
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCccccccccCCCCCCCCeeEEEcC--CCCCCCCCCCcCCHHHHHH
Q 036519 15 AHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLHRDPSSSISIPLETIS--DGYDEGRSAQAETDQAYVD 92 (365)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~~~~~~~~gi~~~~l~--~~~~~~~~~~~~~~~~~~~ 92 (365)
||||+.---+. |.--+.+|+++|++ +|+|+++.+...+.-..........+.+..+. ++.. .+.-.+++..-..
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~-~~~V~VvAP~~~qSg~g~ait~~~pl~~~~~~~~~~~~--~y~v~GTPaDcV~ 76 (253)
T PRK13935 1 MNILVTNDDGI-TSPGIIILAEYLSE-KHEVFVVAPDKERSATGHAITIRVPLWAKKVFISERFV--AYATTGTPADCVK 76 (253)
T ss_pred CeEEEECCCCC-CCHHHHHHHHHHHh-CCcEEEEccCCCCccccccccCCCCceEEEeecCCCcc--EEEECCcHHHHHH
Confidence 56666554333 23336677888864 68998888776655444201111223333332 1111 1111233322222
Q ss_pred HHHHHhHHHHHHHHHhcCCCcEEEEc----------CCCc---cHHHHHHHhCCceEEEec
Q 036519 93 RFWQIGVQTLTELVERMNDVDCIVYD----------SFLP---WALDVAKKFGLTGAAFLT 140 (365)
Q Consensus 93 ~~~~~~~~~l~~ll~~~~~pD~vv~D----------~~~~---~a~~~A~~~giP~v~~~~ 140 (365)
.- +..++.. +||+||+- .+.. .|.+-|..+|||.+.++.
T Consensus 77 la-------l~~~~~~--~pDLVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~ 128 (253)
T PRK13935 77 LG-------YDVIMDK--KVDLVISGINRGPNLGTDVLYSGTVSGALEGAMMGVPSIAISS 128 (253)
T ss_pred HH-------HHhhccC--CCCEEEeCCccCCCCCcCCcccHhHHHHHHHHhcCCCeEEEEc
Confidence 21 2223322 89999975 2222 255666678999998875
No 183
>PRK14099 glycogen synthase; Provisional
Probab=77.38 E-value=9.1 Score=37.03 Aligned_cols=113 Identities=14% Similarity=0.171 Sum_probs=61.7
Q ss_pred CCCC-eEEeecchhh-hh-cccccccccc---cCCh-hhHHHHHHcCCCeeeccccC--chhhHH-HH--HHhHhcceeE
Q 036519 240 TQKG-LVVNWCPQLG-VL-AHEATGCFLT---HCGW-NSTIEALRLGVPMLAMPLWT--DQSTNS-KY--VMDVWKMGLK 307 (365)
Q Consensus 240 ~~~~-~~~~~~p~~~-~L-~~~~~~~~I~---hgG~-gs~~eal~~GvP~v~~P~~~--DQ~~nA-~~--v~~~~G~G~~ 307 (365)
++++ ...+|-.... ++ +.+|+ ++. +=|. .+.+||+++|+|.|+....+ |.-.+. .. .+.. +.|+.
T Consensus 349 ~~~v~~~~G~~~~l~~~~~a~aDi--fv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~-~~G~l 425 (485)
T PRK14099 349 PGQIGVVIGYDEALAHLIQAGADA--LLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGV-ATGVQ 425 (485)
T ss_pred CCCEEEEeCCCHHHHHHHHhcCCE--EEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCC-CceEE
Confidence 4444 3455633222 33 45777 775 3343 56789999997766654321 211110 00 0112 35777
Q ss_pred ecCCCCCcccHHHHHHHHHH---HhcCHHHHHHHH-HHHHcCCCcHHHHHHHHHHHH
Q 036519 308 VPADEKGIVRREAIAHCIGE---ILEGDKWRNFAK-EAVAKGGSSDKNIDDFVANLI 360 (365)
Q Consensus 308 ~~~~~~~~~~~~~l~~~i~~---ll~~~~~~~~a~-~~~~~~g~s~~~~~~~~~~i~ 360 (365)
++. -++++|.+++.+ +++|++.+++.. +.+++.-+-++.+++.++..+
T Consensus 426 ~~~-----~d~~~La~ai~~a~~l~~d~~~~~~l~~~~~~~~fSw~~~a~~y~~lY~ 477 (485)
T PRK14099 426 FSP-----VTADALAAALRKTAALFADPVAWRRLQRNGMTTDVSWRNPAQHYAALYR 477 (485)
T ss_pred eCC-----CCHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhhcCChHHHHHHHHHHHH
Confidence 773 479999999987 667765444433 333344455556666665444
No 184
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=77.21 E-value=24 Score=33.62 Aligned_cols=99 Identities=15% Similarity=0.153 Sum_probs=55.5
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCccccccccCCCCCCCCee--EEEcCCCCCCCCCCCcCCHHHH
Q 036519 13 KLAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLHRDPSSSISIP--LETISDGYDEGRSAQAETDQAY 90 (365)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~~~~~~~~gi~--~~~l~~~~~~~~~~~~~~~~~~ 90 (365)
+..|+.++..+ .-.+++++.|.+-|-+|..+.++...+...+ .+. ....+..... ......+
T Consensus 302 ~gkrv~i~g~~-----~~~~~la~~L~elGm~v~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~-~v~~~~d---- 365 (435)
T cd01974 302 HGKKFALYGDP-----DFLIGLTSFLLELGMEPVHVLTGNGGKRFEK------EMQALLDASPYGAGA-KVYPGKD---- 365 (435)
T ss_pred CCCEEEEEcCh-----HHHHHHHHHHHHCCCEEEEEEeCCCCHHHHH------HHHHHHhhcCCCCCc-EEEECCC----
Confidence 35677766533 3488889999999999987765433222111 000 0000000000 0000011
Q ss_pred HHHHHHHhHHHHHHHHHhcCCCcEEEEcCCCccHHHHHHHhCCceEEEe
Q 036519 91 VDRFWQIGVQTLTELVERMNDVDCIVYDSFLPWALDVAKKFGLTGAAFL 139 (365)
Q Consensus 91 ~~~~~~~~~~~l~~ll~~~~~pD~vv~D~~~~~a~~~A~~~giP~v~~~ 139 (365)
...+.+.++.. +||++|... ....+|+++|+|++.+.
T Consensus 366 --------~~e~~~~i~~~-~pDliiG~s---~~~~~a~~~gip~v~~~ 402 (435)
T cd01974 366 --------LWHLRSLLFTE-PVDLLIGNT---YGKYIARDTDIPLVRFG 402 (435)
T ss_pred --------HHHHHHHHhhc-CCCEEEECc---cHHHHHHHhCCCEEEee
Confidence 12345556666 999999874 37899999999998653
No 185
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=77.11 E-value=4.1 Score=34.20 Aligned_cols=56 Identities=14% Similarity=0.042 Sum_probs=43.3
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCc----cccccccCCCCCCCCeeEEEcC
Q 036519 13 KLAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTY----FISKSLHRDPSSSISIPLETIS 73 (365)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~----~~~~~v~~~~~~~~gi~~~~l~ 73 (365)
+..+|++.+.++-.|-....-++..|++.|++|++++.. ++.+.+.+ .+..++.++
T Consensus 81 ~~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~~-----~~~d~v~lS 140 (201)
T cd02070 81 KKGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVKE-----HKPDILGLS 140 (201)
T ss_pred CCCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-----cCCCEEEEe
Confidence 356899999999999999999999999999999998754 33333333 455666554
No 186
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=77.08 E-value=34 Score=29.71 Aligned_cols=113 Identities=16% Similarity=0.057 Sum_probs=59.2
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCccccccccCCCCCCCCeeEEEcCC--CCCCCCCCCcCCHHHHHH
Q 036519 15 AHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLHRDPSSSISIPLETISD--GYDEGRSAQAETDQAYVD 92 (365)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~~~~~~~~gi~~~~l~~--~~~~~~~~~~~~~~~~~~ 92 (365)
||||+.--=+ =|.-=+.+|+++|++.| +|+++.+...+.-..........+.+..++. +. . .+.-.+++..-..
T Consensus 1 M~ILltNDDG-i~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~g~ait~~~pl~~~~~~~~~~~-~-~~~v~GTPaDcv~ 76 (244)
T TIGR00087 1 MKILLTNDDG-IHSPGIRALYQALKELG-EVTVVAPARQRSGTGHSLTLFEPLRVGQVKVKNGA-H-IYAVDGTPTDCVI 76 (244)
T ss_pred CeEEEECCCC-CCCHhHHHHHHHHHhCC-CEEEEeCCCCccccccCcCCCCCeEEEEeccCCCc-c-EEEEcCcHHHHHH
Confidence 4555443222 12233567899999888 8988887766655543111123455555431 11 0 1111233322222
Q ss_pred HHHHHhHHHHHHHHHhcCCCcEEEEcC----------CCc---cHHHHHHHhCCceEEEec
Q 036519 93 RFWQIGVQTLTELVERMNDVDCIVYDS----------FLP---WALDVAKKFGLTGAAFLT 140 (365)
Q Consensus 93 ~~~~~~~~~l~~ll~~~~~pD~vv~D~----------~~~---~a~~~A~~~giP~v~~~~ 140 (365)
. .+..++.+ +||+||+-. +.. .|.+-|..+|||.+.++.
T Consensus 77 ~-------gl~~l~~~--~pDLVvSGiN~G~N~g~~v~ySGTVgAA~ea~~~GipaiA~S~ 128 (244)
T TIGR00087 77 L-------GINELMPE--VPDLVISGINAGENLGTDVTYSGTVGAAMEAAIHGVPAIAISL 128 (244)
T ss_pred H-------HHHHhccC--CCCeEEeccccCCCCCccEecchhHHHHHHHHHcCCCeEEEEe
Confidence 1 12233322 789999752 111 256666788999998875
No 187
>PRK14098 glycogen synthase; Provisional
Probab=76.49 E-value=4.6 Score=39.08 Aligned_cols=40 Identities=15% Similarity=0.221 Sum_probs=31.5
Q ss_pred CCCcEEEEEcCC------CCCChHHHHHHHHHHHhCCCeEEEEeCc
Q 036519 12 SKLAHCLVLSYP------AQGHMNPLLQFSKRLEHNGIKVTLVTTY 51 (365)
Q Consensus 12 ~~~~~il~~~~~------~~GH~~p~l~la~~L~~~Gh~Vt~~~~~ 51 (365)
.++|||+|++.- +.|=-.-.=+|.++|+++||+|.++.+.
T Consensus 3 ~~~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~ 48 (489)
T PRK14098 3 RRNFKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPK 48 (489)
T ss_pred CCCcEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCC
Confidence 456999999875 3455566677888999999999998874
No 188
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=76.22 E-value=6.7 Score=33.67 Aligned_cols=31 Identities=26% Similarity=0.214 Sum_probs=21.6
Q ss_pred EEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCc
Q 036519 19 VLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTY 51 (365)
Q Consensus 19 ~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~ 51 (365)
+++..+.|- -..+||++|.++||+|+++..+
T Consensus 19 ~itN~SSG~--iG~aLA~~L~~~G~~V~li~r~ 49 (229)
T PRK06732 19 GITNHSTGQ--LGKIIAETFLAAGHEVTLVTTK 49 (229)
T ss_pred eecCccchH--HHHHHHHHHHhCCCEEEEEECc
Confidence 334444442 2467889999999999998754
No 189
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=76.20 E-value=4.9 Score=30.63 Aligned_cols=36 Identities=19% Similarity=0.191 Sum_probs=33.7
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCc
Q 036519 16 HCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTY 51 (365)
Q Consensus 16 ~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~ 51 (365)
||++.+.++-.|-.-..-++.-|+..|++|++.+..
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~ 36 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLR 36 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCC
Confidence 689999999999999999999999999999999864
No 190
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=76.17 E-value=30 Score=30.01 Aligned_cols=91 Identities=19% Similarity=0.297 Sum_probs=55.4
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCccccccccCCCCCCCCeeEEEcCCCCCCCCCCCcCCHHHHHHH
Q 036519 14 LAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLHRDPSSSISIPLETISDGYDEGRSAQAETDQAYVDR 93 (365)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~~~~~~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~ 93 (365)
+|+|+++.+-+- ...|++.|...++.+++.+....-....+ + +...... ++-
T Consensus 2 ~~~ilvlGGT~D-----ar~la~~L~~~~~~~~~ss~t~~g~~l~~-----~-~~~~~~~-G~l---------------- 53 (257)
T COG2099 2 MMRILLLGGTSD-----ARALAKKLAAAPVDIILSSLTGYGAKLAE-----Q-IGPVRVG-GFL---------------- 53 (257)
T ss_pred CceEEEEeccHH-----HHHHHHHhhccCccEEEEEcccccccchh-----c-cCCeeec-CcC----------------
Confidence 456666644333 46899999999977777776555444332 1 1101110 000
Q ss_pred HHHHhHHHHHHHHHhcCCCcEEEEcCCCcc-------HHHHHHHhCCceEEE
Q 036519 94 FWQIGVQTLTELVERMNDVDCIVYDSFLPW-------ALDVAKKFGLTGAAF 138 (365)
Q Consensus 94 ~~~~~~~~l~~ll~~~~~pD~vv~D~~~~~-------a~~~A~~~giP~v~~ 138 (365)
..+.+.+++++. +.|+|| |..-++ +..+|+..|||++.|
T Consensus 54 ----~~e~l~~~l~e~-~i~llI-DATHPyAa~iS~Na~~aake~gipy~r~ 99 (257)
T COG2099 54 ----GAEGLAAFLREE-GIDLLI-DATHPYAARISQNAARAAKETGIPYLRL 99 (257)
T ss_pred ----CHHHHHHHHHHc-CCCEEE-ECCChHHHHHHHHHHHHHHHhCCcEEEE
Confidence 123567777777 888777 433333 678999999999986
No 191
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=75.98 E-value=15 Score=27.22 Aligned_cols=84 Identities=18% Similarity=0.230 Sum_probs=56.6
Q ss_pred CChHHHHHHHHHHHhCCCeEEEEeCccccccccCCCCCCCCeeEEEcCCCCCCCCCCCcCCHHHHHHHHHHHhHHHHHHH
Q 036519 26 GHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLHRDPSSSISIPLETISDGYDEGRSAQAETDQAYVDRFWQIGVQTLTEL 105 (365)
Q Consensus 26 GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~~~~~~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 105 (365)
.+-.-++++++.|.+.|+++. +++...+.+.+ .|+.+..+... .. ....+.+.
T Consensus 10 ~~k~~~~~~~~~l~~~G~~l~--aT~gT~~~l~~-----~gi~~~~v~~~-~~-------------------~~~~i~~~ 62 (110)
T cd01424 10 RDKPEAVEIAKRLAELGFKLV--ATEGTAKYLQE-----AGIPVEVVNKV-SE-------------------GRPNIVDL 62 (110)
T ss_pred CcHhHHHHHHHHHHHCCCEEE--EchHHHHHHHH-----cCCeEEEEeec-CC-------------------CchhHHHH
Confidence 355678999999999999984 56666667775 67776555310 00 11234555
Q ss_pred HHhcCCCcEEEEcCC-------CccHHHHHHHhCCceEE
Q 036519 106 VERMNDVDCIVYDSF-------LPWALDVAKKFGLTGAA 137 (365)
Q Consensus 106 l~~~~~pD~vv~D~~-------~~~a~~~A~~~giP~v~ 137 (365)
+++- ++|+||.-.- .++-+..|-..|||+++
T Consensus 63 i~~~-~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 63 IKNG-EIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred HHcC-CeEEEEECCCCCccCccHHHHHHHHHHhCCCEEe
Confidence 5555 8899997421 24468889999999985
No 192
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=75.96 E-value=6 Score=33.08 Aligned_cols=56 Identities=14% Similarity=-0.025 Sum_probs=44.6
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCc----cccccccCCCCCCCCeeEEEcC
Q 036519 13 KLAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTY----FISKSLHRDPSSSISIPLETIS 73 (365)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~----~~~~~v~~~~~~~~gi~~~~l~ 73 (365)
+..+|++.+.++-.|-....-++.-|..+|++|++++.. .+.+.+.+ .+..++.++
T Consensus 83 ~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~-----~~pd~v~lS 142 (197)
T TIGR02370 83 VLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVKK-----EKPLMLTGS 142 (197)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHH-----cCCCEEEEc
Confidence 446899999999999999999999999999999999865 33444444 555666665
No 193
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=75.71 E-value=6.7 Score=35.03 Aligned_cols=80 Identities=14% Similarity=0.228 Sum_probs=57.1
Q ss_pred CCCeEE-eecc---hhhhhcccccccccccC--ChhhHHHHHHcCCCeeeccccCchhhHHHHHHhHhcceeEecCCCCC
Q 036519 241 QKGLVV-NWCP---QLGVLAHEATGCFLTHC--GWNSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVWKMGLKVPADEKG 314 (365)
Q Consensus 241 ~~~~~~-~~~p---~~~~L~~~~~~~~I~hg--G~gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~ 314 (365)
+++.+. +++| +..+|..||++.|+|+- |.||++-.+..|+|+++- .+-+.+.. +.+. |+-+-.+.+
T Consensus 206 ~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~---r~n~fwqd-l~e~-gv~Vlf~~d--- 277 (322)
T PRK02797 206 ENFQILTEKLPFDDYLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLS---RDNPFWQD-LTEQ-GLPVLFTGD--- 277 (322)
T ss_pred ccEEehhhhCCHHHHHHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEe---cCCchHHH-HHhC-CCeEEecCC---
Confidence 444433 4554 56799999998888864 899999999999998875 34444444 5567 777765655
Q ss_pred cccHHHHHHHHHHH
Q 036519 315 IVRREAIAHCIGEI 328 (365)
Q Consensus 315 ~~~~~~l~~~i~~l 328 (365)
.++...+.++=+++
T Consensus 278 ~L~~~~v~e~~rql 291 (322)
T PRK02797 278 DLDEDIVREAQRQL 291 (322)
T ss_pred cccHHHHHHHHHHH
Confidence 78888887765544
No 194
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=75.35 E-value=2.8 Score=34.61 Aligned_cols=31 Identities=19% Similarity=0.282 Sum_probs=21.0
Q ss_pred EcCCCCCChHHHHHHHHHHHhCCCeEEEEeCcc
Q 036519 20 LSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYF 52 (365)
Q Consensus 20 ~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~ 52 (365)
++..+.|.. ...||+++..+|++|+++..+.
T Consensus 23 ItN~SSG~~--G~~lA~~~~~~Ga~V~li~g~~ 53 (185)
T PF04127_consen 23 ITNRSSGKM--GAALAEEAARRGAEVTLIHGPS 53 (185)
T ss_dssp EEES--SHH--HHHHHHHHHHTT-EEEEEE-TT
T ss_pred ecCCCcCHH--HHHHHHHHHHCCCEEEEEecCc
Confidence 333444543 5789999999999999999984
No 195
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=75.12 E-value=21 Score=32.59 Aligned_cols=45 Identities=20% Similarity=0.294 Sum_probs=35.5
Q ss_pred cCCCCeEEeecchhh---hhcccccccccccCC----hhhHHHHHHcCCCeeec
Q 036519 239 TTQKGLVVNWCPQLG---VLAHEATGCFLTHCG----WNSTIEALRLGVPMLAM 285 (365)
Q Consensus 239 ~~~~~~~~~~~p~~~---~L~~~~~~~~I~hgG----~gs~~eal~~GvP~v~~ 285 (365)
+.+++.+.+-+|++. +|.+.++ |++-.= .-++.||.++|.|+|..
T Consensus 250 l~~rV~~lG~v~h~~Vr~vl~~G~I--FlntSlTEafc~~ivEAaScGL~VVsT 301 (426)
T KOG1111|consen 250 LQDRVVMLGTVPHDRVRDVLVRGDI--FLNTSLTEAFCMVIVEAASCGLPVVST 301 (426)
T ss_pred ccCceEEecccchHHHHHHHhcCcE--EeccHHHHHHHHHHHHHHhCCCEEEEe
Confidence 568888889898874 8888888 887643 24577899999999865
No 196
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=74.49 E-value=23 Score=26.49 Aligned_cols=85 Identities=18% Similarity=0.128 Sum_probs=54.9
Q ss_pred ChHHHHHHHHHHHhCCCeEEEEeCccccccccCCCCCCCCeeEEEcCC--CCCCCCCCCcCCHHHHHHHHHHHhHHHHHH
Q 036519 27 HMNPLLQFSKRLEHNGIKVTLVTTYFISKSLHRDPSSSISIPLETISD--GYDEGRSAQAETDQAYVDRFWQIGVQTLTE 104 (365)
Q Consensus 27 H~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~~~~~~~~gi~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 104 (365)
+=.-++++++.|.+.|+++. +++...+.+.+ .|+++..+.. +... . + ...+.+
T Consensus 11 dk~~~~~~a~~l~~~G~~i~--aT~gTa~~L~~-----~gi~~~~v~~~~~~~~-----~-~------------~~~i~~ 65 (116)
T cd01423 11 SKPELLPTAQKLSKLGYKLY--ATEGTADFLLE-----NGIPVTPVAWPSEEPQ-----N-D------------KPSLRE 65 (116)
T ss_pred cchhHHHHHHHHHHCCCEEE--EccHHHHHHHH-----cCCCceEeeeccCCCC-----C-C------------chhHHH
Confidence 44568899999999999884 56666666665 6666655521 1111 0 0 023455
Q ss_pred HHHhcCCCcEEEEcCC---------CccHHHHHHHhCCceEE
Q 036519 105 LVERMNDVDCIVYDSF---------LPWALDVAKKFGLTGAA 137 (365)
Q Consensus 105 ll~~~~~pD~vv~D~~---------~~~a~~~A~~~giP~v~ 137 (365)
++++- ++|+||.-.. .+.-+..|-++|||+++
T Consensus 66 ~i~~~-~idlVIn~~~~~~~~~~~~~~~iRr~Av~~~ip~iT 106 (116)
T cd01423 66 LLAEG-KIDLVINLPSNRGKRVLDNDYVMRRAADDFAVPLIT 106 (116)
T ss_pred HHHcC-CceEEEECCCCCCCccccCcEeeehhhHhhCCcccc
Confidence 55554 8999997321 24568899999999974
No 197
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=74.40 E-value=15 Score=36.05 Aligned_cols=77 Identities=8% Similarity=-0.054 Sum_probs=49.0
Q ss_pred hhhhhcccccccccc---cCC-hhhHHHHHHcCCCeeeccccC-chhhHHHHHHhHhc--ceeEecCCCCC--cccHHHH
Q 036519 251 QLGVLAHEATGCFLT---HCG-WNSTIEALRLGVPMLAMPLWT-DQSTNSKYVMDVWK--MGLKVPADEKG--IVRREAI 321 (365)
Q Consensus 251 ~~~~L~~~~~~~~I~---hgG-~gs~~eal~~GvP~v~~P~~~-DQ~~nA~~v~~~~G--~G~~~~~~~~~--~~~~~~l 321 (365)
..+++..|++ +|. +=| .-++.||+++|+|+|+....+ .... .-+... + .|+.+..+.+. ..+.++|
T Consensus 468 y~E~~~g~dl--~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v--~E~v~~-~~~~gi~V~~r~~~~~~e~v~~L 542 (590)
T cd03793 468 YEEFVRGCHL--GVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFM--EEHIED-PESYGIYIVDRRFKSPDESVQQL 542 (590)
T ss_pred hHHHhhhceE--EEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhh--HHHhcc-CCCceEEEecCCccchHHHHHHH
Confidence 5578889999 666 344 468999999999999987632 1111 112111 2 57777643111 2467788
Q ss_pred HHHHHHHhcCH
Q 036519 322 AHCIGEILEGD 332 (365)
Q Consensus 322 ~~~i~~ll~~~ 332 (365)
.+++.++++.+
T Consensus 543 a~~m~~~~~~~ 553 (590)
T cd03793 543 TQYMYEFCQLS 553 (590)
T ss_pred HHHHHHHhCCc
Confidence 88888888543
No 198
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=74.01 E-value=13 Score=35.26 Aligned_cols=91 Identities=13% Similarity=0.064 Sum_probs=52.4
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCccccccccCCCCCCCCeeEEEcCCCCCCCCCCCcCCHHHHHH
Q 036519 13 KLAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLHRDPSSSISIPLETISDGYDEGRSAQAETDQAYVD 92 (365)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~~~~~~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~ 92 (365)
++||||++-.+++-| +|++.|++.++-..+++.|-+...... .... ..+ +. ..+....
T Consensus 3 ~~~kvLviG~g~reh-----al~~~~~~~~~~~~~~~~pgn~g~~~~-----~~~~--~~~--~~------~~d~~~l-- 60 (426)
T PRK13789 3 VKLKVLLIGSGGRES-----AIAFALRKSNLLSELKVFPGNGGFPDD-----ELLP--ADS--FS------ILDKSSV-- 60 (426)
T ss_pred CCcEEEEECCCHHHH-----HHHHHHHhCCCCCEEEEECCchHHhcc-----cccc--ccC--cC------cCCHHHH--
Confidence 569999999998877 689999988855454444433322110 0000 000 11 1122222
Q ss_pred HHHHHhHHHHHHHHHhcCCCcEEEEcCCCcc---HHHHHHHhCCceE
Q 036519 93 RFWQIGVQTLTELVERMNDVDCIVYDSFLPW---ALDVAKKFGLTGA 136 (365)
Q Consensus 93 ~~~~~~~~~l~~ll~~~~~pD~vv~D~~~~~---a~~~A~~~giP~v 136 (365)
.++.++. ++|+||...-.+. ...+++++|+|++
T Consensus 61 ----------~~~a~~~-~iD~Vv~g~E~~l~~glad~~~~~Gip~~ 96 (426)
T PRK13789 61 ----------QSFLKSN-PFDLIVVGPEDPLVAGFADWAAELGIPCF 96 (426)
T ss_pred ----------HHHHHHc-CCCEEEECCchHHHHHHHHHHHHcCCCcC
Confidence 2344555 8999998754433 3466778999975
No 199
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=73.55 E-value=15 Score=29.76 Aligned_cols=51 Identities=12% Similarity=0.162 Sum_probs=32.8
Q ss_pred HHHHHHHhHHHHHHHHHhcCCCcEEEEcCCCccHH-H---HHHH-h-CCceEEEeccc
Q 036519 91 VDRFWQIGVQTLTELVERMNDVDCIVYDSFLPWAL-D---VAKK-F-GLTGAAFLTQS 142 (365)
Q Consensus 91 ~~~~~~~~~~~l~~ll~~~~~pD~vv~D~~~~~a~-~---~A~~-~-giP~v~~~~~~ 142 (365)
...+.......+.+++++. +||+||+-..+.... . -.+. . ++|++.+.|-.
T Consensus 70 ~~~~~~~~~~~l~~~l~~~-~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvTD~ 126 (169)
T PF06925_consen 70 LSALSRLFARRLIRLLREF-QPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVTDF 126 (169)
T ss_pred HHHHHHHHHHHHHHHHhhc-CCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEcCC
Confidence 3444555555788888888 999999996654333 1 1222 3 58888776654
No 200
>PRK05920 aromatic acid decarboxylase; Validated
Probab=73.53 E-value=3.7 Score=34.49 Aligned_cols=44 Identities=18% Similarity=0.092 Sum_probs=36.4
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCcccccccc
Q 036519 14 LAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLH 58 (365)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~ 58 (365)
++||++-..|+.+= .-.+.+.++|.+.|++|+++.++....++.
T Consensus 3 ~krIllgITGsiaa-~ka~~lvr~L~~~g~~V~vi~T~~A~~fv~ 46 (204)
T PRK05920 3 MKRIVLAITGASGA-IYGVRLLECLLAADYEVHLVISKAAQKVLA 46 (204)
T ss_pred CCEEEEEEeCHHHH-HHHHHHHHHHHHCCCEEEEEEChhHHHHHH
Confidence 46788777776555 689999999999999999999988877664
No 201
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=73.38 E-value=6.2 Score=30.87 Aligned_cols=39 Identities=18% Similarity=0.198 Sum_probs=36.1
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 036519 12 SKLAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTT 50 (365)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~ 50 (365)
+++.||++.+.+..||=.-.--+++.|+..|.+|...+.
T Consensus 10 g~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~ 48 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGL 48 (143)
T ss_pred CCCceEEEeccCccccccchHHHHHHHHhCCceEEecCC
Confidence 678999999999999999999999999999999998754
No 202
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=73.26 E-value=4.4 Score=35.43 Aligned_cols=47 Identities=19% Similarity=0.277 Sum_probs=42.5
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCccccccccC
Q 036519 13 KLAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLHR 59 (365)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~~ 59 (365)
+...++|+..|+.|-.+=..+||.+|.++|+.|+|++.+++...+..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~ 150 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKA 150 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHH
Confidence 55679999999999999999999999988999999999999888773
No 203
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=72.70 E-value=64 Score=28.09 Aligned_cols=111 Identities=16% Similarity=0.136 Sum_probs=58.6
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCccccccccCCCCCCCCeeEEEcCCCCCCCCCCCcCCHHHHHHHH
Q 036519 15 AHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLHRDPSSSISIPLETISDGYDEGRSAQAETDQAYVDRF 94 (365)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~~~~~~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ 94 (365)
||||+.--=+. |.-=+.+|+++|.+. |+|+++.+...+.-..........+.+..+.++ .+.-.+++..-...
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~~-~~V~VvAP~~~qSg~g~ait~~~pl~~~~~~~~----~~~v~GTPaDcV~~- 73 (250)
T PRK00346 1 MRILLTNDDGI-HAPGIRALAEALREL-ADVTVVAPDRERSGASHSLTLTRPLRVEKVDNG----FYAVDGTPTDCVHL- 73 (250)
T ss_pred CeEEEECCCCC-CChhHHHHHHHHHhC-CCEEEEeCCCCCcCCcccccCCCCeEEEEecCC----eEEECCcHHHHHHH-
Confidence 45655543332 233366789999988 799988887666554431111123444444211 11112233222221
Q ss_pred HHHhHHHHHHHHHhcCCCcEEEEcC----------CCc---cHHHHHHHhCCceEEEec
Q 036519 95 WQIGVQTLTELVERMNDVDCIVYDS----------FLP---WALDVAKKFGLTGAAFLT 140 (365)
Q Consensus 95 ~~~~~~~l~~ll~~~~~pD~vv~D~----------~~~---~a~~~A~~~giP~v~~~~ 140 (365)
.+..++.. +||+||+-. +.. .|..-|..+|||.+.++.
T Consensus 74 ------gl~~l~~~--~pDlVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~ 124 (250)
T PRK00346 74 ------ALNGLLDP--KPDLVVSGINHGANLGDDVLYSGTVAAAMEGALLGIPAIAVSL 124 (250)
T ss_pred ------HHHhhccC--CCCEEEeCCccCCCCCCCeeccHHHHHHHHHHhcCCCeEEEec
Confidence 12233322 899999752 221 255666678999998875
No 204
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=72.50 E-value=5.4 Score=36.90 Aligned_cols=93 Identities=14% Similarity=0.169 Sum_probs=54.6
Q ss_pred CCCCeEE-eecchhhhhcccccccccccCChhhHHHHHHcCCCeeeccccCchhhHHHHHHhHhcceeEecCCCCC--cc
Q 036519 240 TQKGLVV-NWCPQLGVLAHEATGCFLTHCGWNSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVWKMGLKVPADEKG--IV 316 (365)
Q Consensus 240 ~~~~~~~-~~~p~~~~L~~~~~~~~I~hgG~gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~--~~ 316 (365)
.+++..+ +..+-.++|..+|+ +||-- .+.+.|.+..+.|+|.+....|.+.. .. |.-.......-| .-
T Consensus 251 ~~~i~~~~~~~~~~~ll~~aDi--LITDy-SSi~fD~~~l~KPiify~~D~~~Y~~-----~r-g~~~~~~~~~pg~~~~ 321 (369)
T PF04464_consen 251 NSNIIFVSDNEDIYDLLAAADI--LITDY-SSIIFDFLLLNKPIIFYQPDLEEYEK-----ER-GFYFDYEEDLPGPIVY 321 (369)
T ss_dssp TTTEEE-TT-S-HHHHHHT-SE--EEESS--THHHHHGGGT--EEEE-TTTTTTTT-----TS-SBSS-TTTSSSS-EES
T ss_pred CCcEEECCCCCCHHHHHHhcCE--EEEec-hhHHHHHHHhCCCEEEEeccHHHHhh-----cc-CCCCchHhhCCCceeC
Confidence 3455444 35567789999999 99997 45889999999999988776665522 13 333332111001 34
Q ss_pred cHHHHHHHHHHHhcCH-HHHHHHHHH
Q 036519 317 RREAIAHCIGEILEGD-KWRNFAKEA 341 (365)
Q Consensus 317 ~~~~l~~~i~~ll~~~-~~~~~a~~~ 341 (365)
+.++|.++|.++++++ .++++.++.
T Consensus 322 ~~~eL~~~i~~~~~~~~~~~~~~~~~ 347 (369)
T PF04464_consen 322 NFEELIEAIENIIENPDEYKEKREKF 347 (369)
T ss_dssp SHHHHHHHHTTHHHHHHHTHHHHHHH
T ss_pred CHHHHHHHHHhhhhCCHHHHHHHHHH
Confidence 7899999999998765 334444443
No 205
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=72.47 E-value=9.7 Score=36.88 Aligned_cols=65 Identities=18% Similarity=0.230 Sum_probs=43.0
Q ss_pred hhhhhcccccccccc---cCChhhHHHHHHcCCCeeeccccCchhh--HH-HHHHhHhcceeEecCCCCCcccHHHHHHH
Q 036519 251 QLGVLAHEATGCFLT---HCGWNSTIEALRLGVPMLAMPLWTDQST--NS-KYVMDVWKMGLKVPADEKGIVRREAIAHC 324 (365)
Q Consensus 251 ~~~~L~~~~~~~~I~---hgG~gs~~eal~~GvP~v~~P~~~DQ~~--nA-~~v~~~~G~G~~~~~~~~~~~~~~~l~~~ 324 (365)
|.+-+..+|+ |+. .||+.|..|+|+.|||+|..+ ++|+. |+ ..+..+ |+--.+. +-..+-++++
T Consensus 502 h~a~~~iADl--vLDTyPY~g~TTa~daLwm~vPVlT~~--G~~FasR~~~si~~~a-gi~e~vA-----~s~~dYV~~a 571 (620)
T COG3914 502 HRARYGIADL--VLDTYPYGGHTTASDALWMGVPVLTRV--GEQFASRNGASIATNA-GIPELVA-----DSRADYVEKA 571 (620)
T ss_pred HHHhhchhhe--eeecccCCCccchHHHHHhcCceeeec--cHHHHHhhhHHHHHhc-CCchhhc-----CCHHHHHHHH
Confidence 3345667777 765 699999999999999999886 77776 33 333444 6655554 2234445555
Q ss_pred H
Q 036519 325 I 325 (365)
Q Consensus 325 i 325 (365)
|
T Consensus 572 v 572 (620)
T COG3914 572 V 572 (620)
T ss_pred H
Confidence 5
No 206
>PRK14099 glycogen synthase; Provisional
Probab=72.22 E-value=6.6 Score=37.98 Aligned_cols=39 Identities=13% Similarity=0.144 Sum_probs=30.6
Q ss_pred CCcEEEEEcCC------CCCChHHHHHHHHHHHhCCCeEEEEeCc
Q 036519 13 KLAHCLVLSYP------AQGHMNPLLQFSKRLEHNGIKVTLVTTY 51 (365)
Q Consensus 13 ~~~~il~~~~~------~~GH~~p~l~la~~L~~~Gh~Vt~~~~~ 51 (365)
++|||+|++.- +.|=..-.=+|.++|+++||+|.++.+.
T Consensus 2 ~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~ 46 (485)
T PRK14099 2 TPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPG 46 (485)
T ss_pred CCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 57999999875 3355555667788899999999998874
No 207
>PRK06849 hypothetical protein; Provisional
Probab=71.58 E-value=8.4 Score=36.00 Aligned_cols=37 Identities=16% Similarity=0.219 Sum_probs=29.2
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCcc
Q 036519 12 SKLAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYF 52 (365)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~ 52 (365)
+++|+||++.... ...+++|+.|.++||+|+.+....
T Consensus 2 ~~~~~VLI~G~~~----~~~l~iar~l~~~G~~Vi~~d~~~ 38 (389)
T PRK06849 2 NTKKTVLITGARA----PAALELARLFHNAGHTVILADSLK 38 (389)
T ss_pred CCCCEEEEeCCCc----HHHHHHHHHHHHCCCEEEEEeCCc
Confidence 3578888885433 368999999999999999987654
No 208
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=70.59 E-value=15 Score=30.55 Aligned_cols=111 Identities=15% Similarity=0.157 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCcccc-ccccCCCCCCCCeeEEEcCCCCCCCCCCCcCCHHHHHHHHHHHhHHHHHHHHH
Q 036519 29 NPLLQFSKRLEHNGIKVTLVTTYFIS-KSLHRDPSSSISIPLETISDGYDEGRSAQAETDQAYVDRFWQIGVQTLTELVE 107 (365)
Q Consensus 29 ~p~l~la~~L~~~Gh~Vt~~~~~~~~-~~v~~~~~~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~ 107 (365)
.-.+.+...+.++|-+|.|+++.... ..+++ .+...+..++. .-+..+.+.........+..+.......+...+.
T Consensus 43 ~~A~~~i~~i~~~~g~iLfV~t~~~~~~~v~~-~a~~~~~~~i~--~rw~~G~LTN~~~~~~~~~~~~~~~~~~~~k~~~ 119 (193)
T cd01425 43 RLALNFIANIAAKGGKILFVGTKPQAQRAVKK-FAERTGSFYVN--GRWLGGTLTNWKTIRKSIKRLKKLEKEKLEKNLG 119 (193)
T ss_pred HHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH-HHHHcCCeeec--CeecCCcCCCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33444456666779999999987543 33332 11112222211 1111101111222222222222211112222222
Q ss_pred hcC----CCcEEEE-cCCC-ccHHHHHHHhCCceEEEeccc
Q 036519 108 RMN----DVDCIVY-DSFL-PWALDVAKKFGLTGAAFLTQS 142 (365)
Q Consensus 108 ~~~----~pD~vv~-D~~~-~~a~~~A~~~giP~v~~~~~~ 142 (365)
.+. .||+||. |... ..+..=|.++|||+|.+.-+.
T Consensus 120 g~~~~~~~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dtn 160 (193)
T cd01425 120 GIKDMFRLPDLVIVLDPRKEHQAIREASKLGIPVIAIVDTN 160 (193)
T ss_pred cccccccCCCEEEEeCCccchHHHHHHHHcCCCEEEEecCC
Confidence 221 8999884 4322 357888999999999976554
No 209
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=70.31 E-value=11 Score=36.20 Aligned_cols=41 Identities=17% Similarity=0.227 Sum_probs=34.8
Q ss_pred CCcEEEEEcCCCCCChHH------------HHHHHHHHHhCCCeEEEEeCccc
Q 036519 13 KLAHCLVLSYPAQGHMNP------------LLQFSKRLEHNGIKVTLVTTYFI 53 (365)
Q Consensus 13 ~~~~il~~~~~~~GH~~p------------~l~la~~L~~~Gh~Vt~~~~~~~ 53 (365)
+.+||++..+|+.=-+.| ..+||+++..+|++||+++++..
T Consensus 255 ~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~~ 307 (475)
T PRK13982 255 AGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPVD 307 (475)
T ss_pred CCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCcC
Confidence 567899999998877776 47899999999999999997754
No 210
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=70.09 E-value=33 Score=27.99 Aligned_cols=112 Identities=17% Similarity=0.224 Sum_probs=56.6
Q ss_pred CCChHHHHHHHHHH-HhCCCeEEEEeCccccccccCCCCCCCCeeEEEcCCC-------------CCCC----CC-CCcC
Q 036519 25 QGHMNPLLQFSKRL-EHNGIKVTLVTTYFISKSLHRDPSSSISIPLETISDG-------------YDEG----RS-AQAE 85 (365)
Q Consensus 25 ~GH~~p~l~la~~L-~~~Gh~Vt~~~~~~~~~~v~~~~~~~~gi~~~~l~~~-------------~~~~----~~-~~~~ 85 (365)
.|.+.-.+..|++| .+.|.+|.+.-+.. ...+++ . .+++++.++.. .... +. ....
T Consensus 16 ~~~~e~~v~~a~~~~~~~g~dViIsRG~t-a~~lr~--~--~~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~~~~~ 90 (176)
T PF06506_consen 16 EASLEEAVEEARQLLESEGADVIISRGGT-AELLRK--H--VSIPVVEIPISGFDILRALAKAKKYGPKIAVVGYPNIIP 90 (176)
T ss_dssp E--HHHHHHHHHHHHTTTT-SEEEEEHHH-HHHHHC--C---SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEESS-SC
T ss_pred EecHHHHHHHHHHhhHhcCCeEEEECCHH-HHHHHH--h--CCCCEEEECCCHhHHHHHHHHHHhcCCcEEEEecccccH
Confidence 35677889999999 78899998875542 223332 0 23555555410 0000 00 0111
Q ss_pred CHHHHHHHHHH-------HhHHHHHHHHHhcC--CCcEEEEcCCCccHHHHHHHhCCceEEEecccHH
Q 036519 86 TDQAYVDRFWQ-------IGVQTLTELVERMN--DVDCIVYDSFLPWALDVAKKFGLTGAAFLTQSCT 144 (365)
Q Consensus 86 ~~~~~~~~~~~-------~~~~~l~~ll~~~~--~pD~vv~D~~~~~a~~~A~~~giP~v~~~~~~~~ 144 (365)
+...+-..+-- .....++..+++.. +.|+||.+. .+..+|+++|+|++.+.++.-+
T Consensus 91 ~~~~~~~ll~~~i~~~~~~~~~e~~~~i~~~~~~G~~viVGg~---~~~~~A~~~gl~~v~i~sg~es 155 (176)
T PF06506_consen 91 GLESIEELLGVDIKIYPYDSEEEIEAAIKQAKAEGVDVIVGGG---VVCRLARKLGLPGVLIESGEES 155 (176)
T ss_dssp CHHHHHHHHT-EEEEEEESSHHHHHHHHHHHHHTT--EEEESH---HHHHHHHHTTSEEEESS--HHH
T ss_pred HHHHHHHHhCCceEEEEECCHHHHHHHHHHHHHcCCcEEECCH---HHHHHHHHcCCcEEEEEecHHH
Confidence 22332222210 11334455555443 899999994 3689999999999998775433
No 211
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=69.96 E-value=18 Score=26.95 Aligned_cols=84 Identities=19% Similarity=0.274 Sum_probs=54.6
Q ss_pred ChHHHHHHHHHHHhCCCeEEEEeCccccccccCCCCCCCCeeEEEcCCCCCCCCCCCcCCHHHHHHHHHHHhHHHHHHHH
Q 036519 27 HMNPLLQFSKRLEHNGIKVTLVTTYFISKSLHRDPSSSISIPLETISDGYDEGRSAQAETDQAYVDRFWQIGVQTLTELV 106 (365)
Q Consensus 27 H~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~~~~~~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll 106 (365)
+=.-++++|+.|.+.|+++ ++|+...+.+++ .|+++..+-. .+. + ..+.+.+++
T Consensus 10 ~K~~~~~~a~~l~~~G~~i--~AT~gTa~~L~~-----~Gi~~~~v~~-~~~-~-----------------g~~~i~~~i 63 (112)
T cd00532 10 VKAMLVDLAPKLSSDGFPL--FATGGTSRVLAD-----AGIPVRAVSK-RHE-D-----------------GEPTVDAAI 63 (112)
T ss_pred cHHHHHHHHHHHHHCCCEE--EECcHHHHHHHH-----cCCceEEEEe-cCC-C-----------------CCcHHHHHH
Confidence 4456889999999999988 356666666775 6777666531 111 0 113345555
Q ss_pred Hh-cCCCcEEEE--cCCC--------ccHHHHHHHhCCceEE
Q 036519 107 ER-MNDVDCIVY--DSFL--------PWALDVAKKFGLTGAA 137 (365)
Q Consensus 107 ~~-~~~pD~vv~--D~~~--------~~a~~~A~~~giP~v~ 137 (365)
++ - ++|+||. |... ..-+.+|.+.+||+++
T Consensus 64 ~~~g-~idlVIn~~~~~~~~~~~~dg~~iRR~A~~~~Ip~~T 104 (112)
T cd00532 64 AEKG-KFDVVINLRDPRRDRCTDEDGTALLRLARLYKIPVTT 104 (112)
T ss_pred hCCC-CEEEEEEcCCCCcccccCCChHHHHHHHHHcCCCEEE
Confidence 55 5 8899986 3221 2246788899999987
No 212
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=69.74 E-value=13 Score=33.14 Aligned_cols=99 Identities=14% Similarity=0.135 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCccccc---cccC--C-CCCCCCeeEEEcCCCCCCCCCCCcCCHHHHHHHHHHHhHHHH
Q 036519 29 NPLLQFSKRLEHNGIKVTLVTTYFISK---SLHR--D-PSSSISIPLETISDGYDEGRSAQAETDQAYVDRFWQIGVQTL 102 (365)
Q Consensus 29 ~p~l~la~~L~~~Gh~Vt~~~~~~~~~---~v~~--~-~~~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 102 (365)
.+-+.+++.|.++|++|..++.+.... -+.. . .....+..++-+|-.... ..+.....+. .. ...+
T Consensus 11 ~r~~~~~~~l~~~g~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~----~~~~i~~~~~---~~-~~~l 82 (287)
T TIGR02853 11 ARQLELIRKLEELDAKISLIGFDQLEDGFTGAVKCELLELDLTTLDVVILPVPGTS----HDGKVATVFS---NE-KVVL 82 (287)
T ss_pred HHHHHHHHHHHHCCCEEEEEeccccccccccceeecchhhhhccCCEEEECCcccc----CCceEecccc---cC-Cccc
Confidence 478899999999999999999873321 1111 0 011134555555521111 1111111100 00 0112
Q ss_pred -HHHHHhcCCCcEEEEcCCCccHHH-HHHHhCCceE
Q 036519 103 -TELVERMNDVDCIVYDSFLPWALD-VAKKFGLTGA 136 (365)
Q Consensus 103 -~~ll~~~~~pD~vv~D~~~~~a~~-~A~~~giP~v 136 (365)
+++++.+ ++.+++.-.....-.. +|++.||+++
T Consensus 83 ~~~~l~~~-~~~~~~~~G~~~~~l~~~a~~~gi~v~ 117 (287)
T TIGR02853 83 TPELLEST-KGHCTIYVGISNPYLEQLAADAGVKLI 117 (287)
T ss_pred cHHHHHhc-CCCCEEEEecCCHHHHHHHHHCCCeEE
Confidence 3456666 5666665555544444 9999999999
No 213
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=69.36 E-value=70 Score=28.23 Aligned_cols=107 Identities=11% Similarity=0.129 Sum_probs=59.5
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCccccccccCCCCCCCCeeEEEcCCCCCCCCCCCcCCHHHHHHHH
Q 036519 15 AHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLHRDPSSSISIPLETISDGYDEGRSAQAETDQAYVDRF 94 (365)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~~~~~~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ 94 (365)
.=|++...|+.|-..-.-.|++.|.+.|.+|.++...... +.+ .. | .. . ..-+..
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~--~~~-----~~--y-------~~-----~----~~Ek~~ 56 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG--IDR-----ND--Y-------AD-----S----KKEKEA 56 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH---TT-----SS--S--------------G----GGHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc--cch-----hh--h-------hc-----h----hhhHHH
Confidence 3577888899999999999999999999999998855444 332 10 1 00 0 111222
Q ss_pred HHHhHHHHHHHHHhcCCCcEEEEcCCCcc------HHHHHHHhCCceEEEecccHHHHHHH
Q 036519 95 WQIGVQTLTELVERMNDVDCIVYDSFLPW------ALDVAKKFGLTGAAFLTQSCTVASIY 149 (365)
Q Consensus 95 ~~~~~~~l~~ll~~~~~pD~vv~D~~~~~------a~~~A~~~giP~v~~~~~~~~~~~~~ 149 (365)
.......+...+. +-++||.|...+. -..+|+..+.++..++.......+..
T Consensus 57 R~~l~s~v~r~ls---~~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~ 114 (270)
T PF08433_consen 57 RGSLKSAVERALS---KDTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQ 114 (270)
T ss_dssp HHHHHHHHHHHHT---T-SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHH
T ss_pred HHHHHHHHHHhhc---cCeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHH
Confidence 2223333444444 3389999966543 46799999999998877665444443
No 214
>PRK10867 signal recognition particle protein; Provisional
Probab=69.18 E-value=36 Score=32.32 Aligned_cols=43 Identities=16% Similarity=0.186 Sum_probs=36.7
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhC-CCeEEEEeCcccccc
Q 036519 14 LAHCLVLSYPAQGHMNPLLQFSKRLEHN-GIKVTLVTTYFISKS 56 (365)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~la~~L~~~-Gh~Vt~~~~~~~~~~ 56 (365)
+.-|+|+..++.|-..=...||..|+++ |++|.+++.+.+...
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~a 143 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPA 143 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchH
Confidence 4556777778999999999999999999 999999998876653
No 215
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=69.04 E-value=7.9 Score=34.03 Aligned_cols=53 Identities=9% Similarity=0.099 Sum_probs=37.1
Q ss_pred ccccccccccCChhhHHHHHH------cCCCeeeccccCchhhHHHHHHhHhcceeEecCCCCCcccHHHHHHHHHHHhc
Q 036519 257 HEATGCFLTHCGWNSTIEALR------LGVPMLAMPLWTDQSTNSKYVMDVWKMGLKVPADEKGIVRREAIAHCIGEILE 330 (365)
Q Consensus 257 ~~~~~~~I~hgG~gs~~eal~------~GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~ 330 (365)
.+|+ +|+-||-||+..+++ .++|++.+-. - .+|. +. +.+++++.+.+.++++
T Consensus 35 ~~Dl--vi~iGGDGT~L~a~~~~~~~~~~iPilGIN~-------------G-~lGF-L~-----~~~~~~~~~~l~~i~~ 92 (265)
T PRK04885 35 NPDI--VISVGGDGTLLSAFHRYENQLDKVRFVGVHT-------------G-HLGF-YT-----DWRPFEVDKLVIALAK 92 (265)
T ss_pred CCCE--EEEECCcHHHHHHHHHhcccCCCCeEEEEeC-------------C-Ccee-cc-----cCCHHHHHHHHHHHHc
Confidence 4677 999999999999986 4788877742 1 1221 11 3567777788888876
Q ss_pred C
Q 036519 331 G 331 (365)
Q Consensus 331 ~ 331 (365)
+
T Consensus 93 g 93 (265)
T PRK04885 93 D 93 (265)
T ss_pred C
Confidence 5
No 216
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=68.82 E-value=11 Score=32.01 Aligned_cols=56 Identities=13% Similarity=0.022 Sum_probs=44.0
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCc----cccccccCCCCCCCCeeEEEcC
Q 036519 13 KLAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTY----FISKSLHRDPSSSISIPLETIS 73 (365)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~----~~~~~v~~~~~~~~gi~~~~l~ 73 (365)
+..+|++.+.++-.|-....-++..|..+|++|++++.. ++.+.+.+ .+-.++.++
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~~~-----~~~~~V~lS 146 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAAKE-----HKADIIGLS 146 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHH-----cCCCEEEEc
Confidence 457899999999999999999999999999999999864 33444443 445555554
No 217
>PRK06988 putative formyltransferase; Provisional
Probab=68.57 E-value=14 Score=33.33 Aligned_cols=33 Identities=24% Similarity=0.311 Sum_probs=23.7
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCc
Q 036519 14 LAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTY 51 (365)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~ 51 (365)
||||+|+..+.. .+...+.|.++||+|..+.+.
T Consensus 2 ~mkIvf~Gs~~~-----a~~~L~~L~~~~~~i~~Vvt~ 34 (312)
T PRK06988 2 KPRAVVFAYHNV-----GVRCLQVLLARGVDVALVVTH 34 (312)
T ss_pred CcEEEEEeCcHH-----HHHHHHHHHhCCCCEEEEEcC
Confidence 589999976653 345566777889998876553
No 218
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=68.56 E-value=28 Score=31.60 Aligned_cols=101 Identities=11% Similarity=0.013 Sum_probs=64.3
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEeCccccccccCCCCCCCCeeE-EEcCCCCCCCCCCCcCCHHHHHH
Q 036519 16 HCLVLSYPAQGHMNPLLQFSKRLEHN--GIKVTLVTTYFISKSLHRDPSSSISIPL-ETISDGYDEGRSAQAETDQAYVD 92 (365)
Q Consensus 16 ~il~~~~~~~GH~~p~l~la~~L~~~--Gh~Vt~~~~~~~~~~v~~~~~~~~gi~~-~~l~~~~~~~~~~~~~~~~~~~~ 92 (365)
|||++-..+.|++.-..++.+.|+++ +.+|+|++.+.+.+.++. . +.++- +.++ ... .....
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~~--~--p~id~v~~~~--~~~-------~~~~~-- 65 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLLER--M--PEIRQAIDMP--LGH-------GALEL-- 65 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHHHhc--C--chhceeeecC--Ccc-------cchhh--
Confidence 58999999999999999999999996 899999999888777774 1 22321 2222 111 00011
Q ss_pred HHHHHhHHHHHHHHHhcCCCcEEEEcCCCccHHHHHHHhCCceE
Q 036519 93 RFWQIGVQTLTELVERMNDVDCIVYDSFLPWALDVAKKFGLTGA 136 (365)
Q Consensus 93 ~~~~~~~~~l~~ll~~~~~pD~vv~D~~~~~a~~~A~~~giP~v 136 (365)
... ..+..-+++. +.|++|.-........++...|+|.-
T Consensus 66 --~~~--~~~~~~lr~~-~yD~vi~l~~~~~s~ll~~~~~~~~r 104 (334)
T TIGR02195 66 --TER--RRLGRSLREE-RYDQAIVLPNSLKSALIPFFAGIPHR 104 (334)
T ss_pred --hHH--HHHHHHHhhc-CCCEEEECCCCHHHHHHHHHcCCCce
Confidence 000 1122334444 88999865544446667777777754
No 219
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=68.53 E-value=18 Score=32.66 Aligned_cols=57 Identities=23% Similarity=0.210 Sum_probs=39.9
Q ss_pred chhhhhcccccccccccCChhhHHHHHHcCCCeeeccccCchhh----HHHHHHhHhcceeEec
Q 036519 250 PQLGVLAHEATGCFLTHCGWNSTIEALRLGVPMLAMPLWTDQST----NSKYVMDVWKMGLKVP 309 (365)
Q Consensus 250 p~~~~L~~~~~~~~I~hgG~gs~~eal~~GvP~v~~P~~~DQ~~----nA~~v~~~~G~G~~~~ 309 (365)
|+...|..||. ++||--..+.++||++.|+|+.++|... +.. -...+++. |+-..+.
T Consensus 221 Py~~~La~ad~-i~VT~DSvSMvsEA~~tG~pV~v~~l~~-~~~r~~r~~~~L~~~-g~~r~~~ 281 (311)
T PF06258_consen 221 PYLGFLAAADA-IVVTEDSVSMVSEAAATGKPVYVLPLPG-RSGRFRRFHQSLEER-GAVRPFT 281 (311)
T ss_pred cHHHHHHhCCE-EEEcCccHHHHHHHHHcCCCEEEecCCC-cchHHHHHHHHHHHC-CCEEECC
Confidence 45678999997 3556666799999999999999999865 322 22344445 6655544
No 220
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=68.30 E-value=4.5 Score=37.56 Aligned_cols=41 Identities=29% Similarity=0.333 Sum_probs=36.0
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCcccccccc
Q 036519 17 CLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLH 58 (365)
Q Consensus 17 il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~ 58 (365)
||+---|+-|--.=+|+++..|+++| +|.|+++++...++.
T Consensus 96 iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~Qik 136 (456)
T COG1066 96 ILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQIK 136 (456)
T ss_pred EEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHHH
Confidence 56666699999999999999999999 999999998877765
No 221
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=68.27 E-value=61 Score=26.02 Aligned_cols=120 Identities=13% Similarity=0.175 Sum_probs=64.1
Q ss_pred EEEcCCCCCChHHHHH-HHHHHHhCCCeEEEEeCccccccccCCCCCCCCeeEEEcCCCC----CCCCCCCcCCHHHHHH
Q 036519 18 LVLSYPAQGHMNPLLQ-FSKRLEHNGIKVTLVTTYFISKSLHRDPSSSISIPLETISDGY----DEGRSAQAETDQAYVD 92 (365)
Q Consensus 18 l~~~~~~~GH~~p~l~-la~~L~~~Gh~Vt~~~~~~~~~~v~~~~~~~~gi~~~~l~~~~----~~~~~~~~~~~~~~~~ 92 (365)
..+.+...+.+..+|. +|.+|+++|++|.=+...+....-. .........++++- .+ .+-....--..=.
T Consensus 2 aav~~~~~~~~d~lL~~~a~~L~~~G~rv~G~vQ~~~~~~~~----~~~~m~l~dl~~G~~~~IsQ-~LG~gs~gCrLD~ 76 (159)
T PF10649_consen 2 AAVVYDDGGDIDALLAAFAARLRARGVRVAGLVQRNTADGDG----GRCDMDLRDLPSGRRIRISQ-DLGPGSRGCRLDP 76 (159)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccCCCCC----CccceEEEECCCCCEEEEee-ccCCCCcccccCH
Confidence 3455566677777764 7999999999998554443221111 11456666666431 11 1111000000000
Q ss_pred HHHHHhHHHHHHHHHhcCCCcEEEEcCCCc---------cHHHHHHHhCCceEEEecccHH
Q 036519 93 RFWQIGVQTLTELVERMNDVDCIVYDSFLP---------WALDVAKKFGLTGAAFLTQSCT 144 (365)
Q Consensus 93 ~~~~~~~~~l~~ll~~~~~pD~vv~D~~~~---------~a~~~A~~~giP~v~~~~~~~~ 144 (365)
.-.......++..+++ .||++|..-|.- .....|-..|||+++--+....
T Consensus 77 ~~La~A~~~l~~al~~--~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~V~~~~l 135 (159)
T PF10649_consen 77 GALAEASAALRRALAE--GADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTAVPPRNL 135 (159)
T ss_pred HHHHHHHHHHHHHHhc--CCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEEECHHHH
Confidence 1112222334555554 799999885532 1455577889999986665433
No 222
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=67.79 E-value=62 Score=25.97 Aligned_cols=97 Identities=19% Similarity=0.210 Sum_probs=57.6
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEE---eCc--ccc-ccccCCCCCCCCeeEEEcCCCCCCCCCCCcCCHHH
Q 036519 16 HCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLV---TTY--FIS-KSLHRDPSSSISIPLETISDGYDEGRSAQAETDQA 89 (365)
Q Consensus 16 ~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~---~~~--~~~-~~v~~~~~~~~gi~~~~l~~~~~~~~~~~~~~~~~ 89 (365)
-|.+.+.++.|-....+.+|-+.+.+|++|.|+ -+. ... ..+++ . +++.+.....++.- .. .+...
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~--l--~~v~~~~~g~~~~~-~~---~~~~~ 75 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALER--L--PNIEIHRMGRGFFW-TT---ENDEE 75 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHh--C--CCcEEEECCCCCcc-CC---CChHH
Confidence 367888999999999999999999999999984 332 111 12222 1 36777776643321 11 12222
Q ss_pred HHHHHHHHhHHHHHHHHHhcCCCcEEEEcCCCc
Q 036519 90 YVDRFWQIGVQTLTELVERMNDVDCIVYDSFLP 122 (365)
Q Consensus 90 ~~~~~~~~~~~~l~~ll~~~~~pD~vv~D~~~~ 122 (365)
..... +.........+..- +.|+||-|-+..
T Consensus 76 ~~~~a-~~~~~~a~~~~~~~-~~dLlVLDEi~~ 106 (159)
T cd00561 76 DIAAA-AEGWAFAKEAIASG-EYDLVILDEINY 106 (159)
T ss_pred HHHHH-HHHHHHHHHHHhcC-CCCEEEEechHh
Confidence 22222 22222334445544 899999995543
No 223
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=67.60 E-value=7.5 Score=35.03 Aligned_cols=40 Identities=18% Similarity=0.139 Sum_probs=33.0
Q ss_pred cEEEEEcC-CCCCChHHHHHHHHHHHhCCCeEEEEeCcccc
Q 036519 15 AHCLVLSY-PAQGHMNPLLQFSKRLEHNGIKVTLVTTYFIS 54 (365)
Q Consensus 15 ~~il~~~~-~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~ 54 (365)
||++|+.+ |+-|-..-..++|-.++++|++|.+++++...
T Consensus 1 ~r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~ 41 (305)
T PF02374_consen 1 MRILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAH 41 (305)
T ss_dssp -SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTT
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCc
Confidence 57777776 78899999999999999999999999987543
No 224
>PRK11519 tyrosine kinase; Provisional
Probab=67.34 E-value=1.4e+02 Score=30.67 Aligned_cols=40 Identities=13% Similarity=0.200 Sum_probs=32.2
Q ss_pred CCCcEEEEEcC--CCCCChHHHHHHHHHHHhCCCeEEEEeCc
Q 036519 12 SKLAHCLVLSY--PAQGHMNPLLQFSKRLEHNGIKVTLVTTY 51 (365)
Q Consensus 12 ~~~~~il~~~~--~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~ 51 (365)
+++.|+++++. |+-|-..-...||..|+..|++|.++-.+
T Consensus 523 ~~~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~D 564 (719)
T PRK11519 523 QAQNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCD 564 (719)
T ss_pred CCCceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence 34456666665 68899999999999999999999998654
No 225
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=67.14 E-value=6.3 Score=35.70 Aligned_cols=45 Identities=13% Similarity=0.120 Sum_probs=40.9
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEeCccccccccC
Q 036519 15 AHCLVLSYPAQGHMNPLLQFSKRLEHN--GIKVTLVTTYFISKSLHR 59 (365)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~la~~L~~~--Gh~Vt~~~~~~~~~~v~~ 59 (365)
|||+++-....|++.-..++.+.|+++ +.+|++++.+.+.+.++.
T Consensus 1 m~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~~~l~~~ 47 (322)
T PRK10964 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFAQIPSW 47 (322)
T ss_pred CeEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHHHHHHhc
Confidence 689999999999999999999999996 899999999988776663
No 226
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=67.03 E-value=46 Score=30.97 Aligned_cols=34 Identities=21% Similarity=0.343 Sum_probs=27.2
Q ss_pred CCcEEEEEc-CCCCCChHHHHHHHHHHHhCCCeEEEEeCc
Q 036519 13 KLAHCLVLS-YPAQGHMNPLLQFSKRLEHNGIKVTLVTTY 51 (365)
Q Consensus 13 ~~~~il~~~-~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~ 51 (365)
.+++|+++- .|..|. .+|..|+++||+|+++...
T Consensus 97 ~~~~I~IiGG~GlmG~-----slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 97 DLRPVVIVGGKGQLGR-----LFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred ccceEEEEcCCChhhH-----HHHHHHHHCCCeEEEeCCC
Confidence 457899887 677775 5788899999999998754
No 227
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=66.63 E-value=7.5 Score=32.14 Aligned_cols=41 Identities=10% Similarity=0.080 Sum_probs=34.6
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCccccc
Q 036519 15 AHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISK 55 (365)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~ 55 (365)
+||++...|+.|=+.-.+.+.++|.+.|++|+++.++....
T Consensus 1 ~~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~~A~~ 41 (187)
T TIGR02852 1 KRIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSETVQT 41 (187)
T ss_pred CEEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEchhHHH
Confidence 36888888888888777899999999999999988876653
No 228
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=66.49 E-value=8.3 Score=36.90 Aligned_cols=82 Identities=16% Similarity=0.126 Sum_probs=51.6
Q ss_pred hHHHHHHcCCCeeeccccCchhhHHHHHHhHhcceeEecCCCCCcccHHHHHHHHHHHhcCHHHHHHHHH----HHHcCC
Q 036519 271 STIEALRLGVPMLAMPLWTDQSTNSKYVMDVWKMGLKVPADEKGIVRREAIAHCIGEILEGDKWRNFAKE----AVAKGG 346 (365)
Q Consensus 271 s~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~----~~~~~g 346 (365)
++.||+++|+|+++.= +-.-+..+++. --|.-.++. .-....+++++.++..|++++.++.+ ...+.-
T Consensus 381 v~IEAMa~glPvvAt~----~GGP~EiV~~~-~tG~l~dp~---~e~~~~~a~~~~kl~~~p~l~~~~~~~G~~rV~e~f 452 (495)
T KOG0853|consen 381 VPIEAMACGLPVVATN----NGGPAEIVVHG-VTGLLIDPG---QEAVAELADALLKLRRDPELWARMGKNGLKRVKEMF 452 (495)
T ss_pred eeHHHHhcCCCEEEec----CCCceEEEEcC-CcceeeCCc---hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 6789999999998763 33334455555 556666643 33445799999999999977666643 344433
Q ss_pred CcHHHHHHHHHHHH
Q 036519 347 SSDKNIDDFVANLI 360 (365)
Q Consensus 347 ~s~~~~~~~~~~i~ 360 (365)
+-..-.+.+.+.+.
T Consensus 453 s~~~~~~ri~~~~~ 466 (495)
T KOG0853|consen 453 SWQHYSERIASVLG 466 (495)
T ss_pred hHHHHHHHHHHHhH
Confidence 33333444444443
No 229
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=66.37 E-value=22 Score=33.84 Aligned_cols=34 Identities=15% Similarity=0.410 Sum_probs=27.8
Q ss_pred HHHHHHHhcCCCcEEEEcCCCccHHHHHHHhCCceEEE
Q 036519 101 TLTELVERMNDVDCIVYDSFLPWALDVAKKFGLTGAAF 138 (365)
Q Consensus 101 ~l~~ll~~~~~pD~vv~D~~~~~a~~~A~~~giP~v~~ 138 (365)
.+.+++++. +||++|.+.. ...+|+++|||++.+
T Consensus 363 e~~~~l~~~-~~dliiG~s~---~~~~a~~~~ip~~~~ 396 (429)
T cd03466 363 DIESYAKEL-KIDVLIGNSY---GRRIAEKLGIPLIRI 396 (429)
T ss_pred HHHHHHHhc-CCCEEEECch---hHHHHHHcCCCEEEe
Confidence 456667777 9999999854 679999999999865
No 230
>PF10820 DUF2543: Protein of unknown function (DUF2543); InterPro: IPR020251 This entry contains proteins with no known function.
Probab=66.08 E-value=20 Score=23.94 Aligned_cols=41 Identities=20% Similarity=0.315 Sum_probs=31.8
Q ss_pred HHHHHHHHhcCHHHHHHHH-HHHHcCCCcHHHHHHHHHHHHh
Q 036519 321 IAHCIGEILEGDKWRNFAK-EAVAKGGSSDKNIDDFVANLIS 361 (365)
Q Consensus 321 l~~~i~~ll~~~~~~~~a~-~~~~~~g~s~~~~~~~~~~i~~ 361 (365)
+.-.|.++++|+++.+.|+ +++.+.|-..+..+++..++..
T Consensus 36 FQlLitRLmnneeIsEeaQ~EMA~eAgi~~~rID~IA~fLNq 77 (81)
T PF10820_consen 36 FQLLITRLMNNEEISEEAQQEMASEAGIDEQRIDDIANFLNQ 77 (81)
T ss_pred HHHHHHHHhccHhhhHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 3445677788999988886 4777888888889998888764
No 231
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=65.94 E-value=82 Score=30.21 Aligned_cols=90 Identities=11% Similarity=0.048 Sum_probs=54.3
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCccccc----cccCCCCCCCCeeEEEcCCCCCCCCCCCcCCHHH
Q 036519 14 LAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISK----SLHRDPSSSISIPLETISDGYDEGRSAQAETDQA 89 (365)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~----~v~~~~~~~~gi~~~~l~~~~~~~~~~~~~~~~~ 89 (365)
..+++++..+ ...+.+++.|.+-|.+|..+++....+ .+.+ ....+.. .+. .
T Consensus 326 Gkrv~i~~g~-----~~~~~l~~~l~elGmevv~~~t~~~~~~d~~~l~~--~~~~~~~--v~~----------~----- 381 (456)
T TIGR01283 326 GKKAAIYTGG-----VKSWSLVSALQDLGMEVVATGTQKGTEEDYARIRE--LMGEGTV--MLD----------D----- 381 (456)
T ss_pred CCEEEEEcCC-----chHHHHHHHHHHCCCEEEEEeeecCCHHHHHHHHH--HcCCCeE--EEe----------C-----
Confidence 4567665443 345688888999999999886553322 2221 0000100 000 0
Q ss_pred HHHHHHHHhHHHHHHHHHhcCCCcEEEEcCCCccHHHHHHHhCCceEEE
Q 036519 90 YVDRFWQIGVQTLTELVERMNDVDCIVYDSFLPWALDVAKKFGLTGAAF 138 (365)
Q Consensus 90 ~~~~~~~~~~~~l~~ll~~~~~pD~vv~D~~~~~a~~~A~~~giP~v~~ 138 (365)
.-...+.+++++. +||++|.. .....+|+++|||++.+
T Consensus 382 -------~d~~e~~~~i~~~-~pDl~ig~---~~~~~~a~k~giP~i~~ 419 (456)
T TIGR01283 382 -------ANPRELLKLLLEY-KADLLIAG---GKERYTALKLGIPFCDI 419 (456)
T ss_pred -------CCHHHHHHHHhhc-CCCEEEEc---cchHHHHHhcCCCEEEc
Confidence 0123456667777 99999976 34678889999999875
No 232
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=65.73 E-value=10 Score=33.81 Aligned_cols=57 Identities=11% Similarity=0.195 Sum_probs=39.2
Q ss_pred hhcccccccccccCChhhHHHHHH----cCCCeeeccccCchhhHHHHHHhHhcceeEecCCCCCcccHHHHHHHHHHHh
Q 036519 254 VLAHEATGCFLTHCGWNSTIEALR----LGVPMLAMPLWTDQSTNSKYVMDVWKMGLKVPADEKGIVRREAIAHCIGEIL 329 (365)
Q Consensus 254 ~L~~~~~~~~I~hgG~gs~~eal~----~GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll 329 (365)
+...+|+ +|+-||-||+..++. .++|++.+-.. .+|. +. +.+++++.+++.+++
T Consensus 61 ~~~~~Dl--vi~iGGDGT~L~aa~~~~~~~~PilGIN~G--------------~lGF-Lt-----~~~~~~~~~~l~~i~ 118 (287)
T PRK14077 61 LFKISDF--LISLGGDGTLISLCRKAAEYDKFVLGIHAG--------------HLGF-LT-----DITVDEAEKFFQAFF 118 (287)
T ss_pred cccCCCE--EEEECCCHHHHHHHHHhcCCCCcEEEEeCC--------------Cccc-CC-----cCCHHHHHHHHHHHH
Confidence 3446788 999999999998866 36787666321 1221 22 567888888888888
Q ss_pred cCH
Q 036519 330 EGD 332 (365)
Q Consensus 330 ~~~ 332 (365)
+++
T Consensus 119 ~g~ 121 (287)
T PRK14077 119 QGE 121 (287)
T ss_pred cCC
Confidence 653
No 233
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=65.61 E-value=29 Score=29.89 Aligned_cols=32 Identities=22% Similarity=0.242 Sum_probs=23.8
Q ss_pred CCcEEE-EcCCC-ccHHHHHHHhCCceEEEeccc
Q 036519 111 DVDCIV-YDSFL-PWALDVAKKFGLTGAAFLTQS 142 (365)
Q Consensus 111 ~pD~vv-~D~~~-~~a~~~A~~~giP~v~~~~~~ 142 (365)
-||+++ .|... --|+.=|.++|||+|.+.-..
T Consensus 156 ~Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn 189 (252)
T COG0052 156 LPDVLFVIDPRKEKIAVKEANKLGIPVVALVDTN 189 (252)
T ss_pred CCCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCC
Confidence 389887 56443 348888999999999875544
No 234
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=65.50 E-value=12 Score=33.99 Aligned_cols=82 Identities=13% Similarity=0.178 Sum_probs=61.0
Q ss_pred CCCeE-Eeecc---hhhhhccccccccccc--CChhhHHHHHHcCCCeeeccccCchhhHHHHHHhHhcceeEecCCCCC
Q 036519 241 QKGLV-VNWCP---QLGVLAHEATGCFLTH--CGWNSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVWKMGLKVPADEKG 314 (365)
Q Consensus 241 ~~~~~-~~~~p---~~~~L~~~~~~~~I~h--gG~gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~ 314 (365)
+++.+ .+++| +..+|..||++.|.|. =|.|+++-.|+.|+|+++- .+-+.+ .-+.+. |+=+-...+
T Consensus 245 ~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~---~~np~~-~~l~~~-~ipVlf~~d--- 316 (360)
T PF07429_consen 245 ENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLS---RDNPFW-QDLKEQ-GIPVLFYGD--- 316 (360)
T ss_pred cceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEe---cCChHH-HHHHhC-CCeEEeccc---
Confidence 35544 35666 4569999999877775 4899999999999998764 333433 455667 777776655
Q ss_pred cccHHHHHHHHHHHhc
Q 036519 315 IVRREAIAHCIGEILE 330 (365)
Q Consensus 315 ~~~~~~l~~~i~~ll~ 330 (365)
+++.+.++++=+++.+
T Consensus 317 ~L~~~~v~ea~rql~~ 332 (360)
T PF07429_consen 317 ELDEALVREAQRQLAN 332 (360)
T ss_pred cCCHHHHHHHHHHHhh
Confidence 8999999999888864
No 235
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=65.39 E-value=16 Score=30.06 Aligned_cols=82 Identities=20% Similarity=0.248 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCccccccccCCCCCCCCeeEEEcC--CCCCCCCCCC---cCCHHHHHHHHHHHh-HHHH
Q 036519 29 NPLLQFSKRLEHNGIKVTLVTTYFISKSLHRDPSSSISIPLETIS--DGYDEGRSAQ---AETDQAYVDRFWQIG-VQTL 102 (365)
Q Consensus 29 ~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~~~~~~~~gi~~~~l~--~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~l 102 (365)
.-.+.+|+.|.+.|+++. +|....+.+++ .|+++..+. .++|+ .++. +-.+.-.-..+.+.- ....
T Consensus 11 ~~l~~lAk~L~~lGf~I~--AT~GTAk~L~e-----~GI~v~~V~k~TgfpE-~l~GRVKTLHP~ihggiL~~~~~~~~~ 82 (187)
T cd01421 11 TGLVEFAKELVELGVEIL--STGGTAKFLKE-----AGIPVTDVSDITGFPE-ILGGRVKTLHPKIHGGILARRDNEEHK 82 (187)
T ss_pred ccHHHHHHHHHHCCCEEE--EccHHHHHHHH-----cCCeEEEhhhccCCcH-hhCCccccCChhhhhhhhcCCCChhHH
Confidence 457899999999999984 66667777876 788888775 35665 3321 222222222222222 2222
Q ss_pred HHHHHhcC--CCcEEEEcCC
Q 036519 103 TELVERMN--DVDCIVYDSF 120 (365)
Q Consensus 103 ~~ll~~~~--~pD~vv~D~~ 120 (365)
-+++.. ..|+||++..
T Consensus 83 --~~~~~~i~~idlVvvNlY 100 (187)
T cd01421 83 --DLEEHGIEPIDLVVVNLY 100 (187)
T ss_pred --HHHHcCCCCeeEEEEccc
Confidence 344444 8899999844
No 236
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=65.31 E-value=42 Score=31.98 Aligned_cols=43 Identities=16% Similarity=0.300 Sum_probs=37.2
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCccccc
Q 036519 13 KLAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISK 55 (365)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~ 55 (365)
++..|+|+..++.|-..=...||..|.++|++|.+++.+.+..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~ 136 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRP 136 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCH
Confidence 4566788888999999999999999999999999998876644
No 237
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=64.27 E-value=22 Score=34.42 Aligned_cols=45 Identities=16% Similarity=0.049 Sum_probs=38.6
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCccccccccC
Q 036519 15 AHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLHR 59 (365)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~~ 59 (365)
.-+++...|+.|-..=.+.++.+.+++|.+|.|+++++..+.+.+
T Consensus 264 s~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~ 308 (484)
T TIGR02655 264 SIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLR 308 (484)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHH
Confidence 347888889999999999999999999999999999877666543
No 238
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=64.26 E-value=26 Score=25.67 Aligned_cols=86 Identities=16% Similarity=0.178 Sum_probs=49.1
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCC--CeEEEEeCccccccccCCCCCCCCeeEEEcCCCCCCCCCCCcCCHHHHHH
Q 036519 15 AHCLVLSYPAQGHMNPLLQFSKRLEHNG--IKVTLVTTYFISKSLHRDPSSSISIPLETISDGYDEGRSAQAETDQAYVD 92 (365)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~la~~L~~~G--h~Vt~~~~~~~~~~v~~~~~~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~ 92 (365)
||||++-.+++-| +||..|.+-- .+|+++-.......+.+ .+.+ .. .+.
T Consensus 1 MkVLviGsGgREH-----Aia~~l~~s~~v~~v~~aPGN~G~~~~~~---------~~~~----~~------~d~----- 51 (100)
T PF02844_consen 1 MKVLVIGSGGREH-----AIAWKLSQSPSVEEVYVAPGNPGTAELGK---------NVPI----DI------TDP----- 51 (100)
T ss_dssp EEEEEEESSHHHH-----HHHHHHTTCTTEEEEEEEE--TTGGGTSE---------EE-S-----T------T-H-----
T ss_pred CEEEEECCCHHHH-----HHHHHHhcCCCCCEEEEeCCCHHHHhhce---------ecCC----CC------CCH-----
Confidence 8999999999988 5899998642 34444333222333221 1111 10 111
Q ss_pred HHHHHhHHHHHHHHHhcCCCcEEEEcCCCc---cHHHHHHHhCCceEE
Q 036519 93 RFWQIGVQTLTELVERMNDVDCIVYDSFLP---WALDVAKKFGLTGAA 137 (365)
Q Consensus 93 ~~~~~~~~~l~~ll~~~~~pD~vv~D~~~~---~a~~~A~~~giP~v~ 137 (365)
..+.+..++. ++|+||...-.+ ...+.-++.|||++.
T Consensus 52 -------~~l~~~a~~~-~idlvvvGPE~pL~~Gl~D~l~~~gi~vfG 91 (100)
T PF02844_consen 52 -------EELADFAKEN-KIDLVVVGPEAPLVAGLADALRAAGIPVFG 91 (100)
T ss_dssp -------HHHHHHHHHT-TESEEEESSHHHHHTTHHHHHHHTT-CEES
T ss_pred -------HHHHHHHHHc-CCCEEEECChHHHHHHHHHHHHHCCCcEEC
Confidence 2234444455 999999885433 357888889999864
No 239
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=63.91 E-value=12 Score=33.50 Aligned_cols=55 Identities=16% Similarity=0.256 Sum_probs=38.5
Q ss_pred hcccccccccccCChhhHHHHHHc----CCCeeeccccCchhhHHHHHHhHhcceeEecCCCCCcccHHHHHHHHHHHhc
Q 036519 255 LAHEATGCFLTHCGWNSTIEALRL----GVPMLAMPLWTDQSTNSKYVMDVWKMGLKVPADEKGIVRREAIAHCIGEILE 330 (365)
Q Consensus 255 L~~~~~~~~I~hgG~gs~~eal~~----GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~ 330 (365)
-..+|+ +|+-||-||+.+++.. ++|++.+-. - .+| -+. +.+++++.+.+.++++
T Consensus 61 ~~~~d~--vi~~GGDGt~l~~~~~~~~~~~pilGIn~-------------G-~lG-FL~-----~~~~~~~~~~l~~~~~ 118 (291)
T PRK02155 61 GARADL--AVVLGGDGTMLGIGRQLAPYGVPLIGINH-------------G-RLG-FIT-----DIPLDDMQETLPPMLA 118 (291)
T ss_pred ccCCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEcC-------------C-Ccc-ccc-----cCCHHHHHHHHHHHHc
Confidence 345778 9999999999999874 667766531 1 122 122 4677888888888886
Q ss_pred C
Q 036519 331 G 331 (365)
Q Consensus 331 ~ 331 (365)
+
T Consensus 119 g 119 (291)
T PRK02155 119 G 119 (291)
T ss_pred C
Confidence 5
No 240
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=63.69 E-value=79 Score=30.54 Aligned_cols=89 Identities=12% Similarity=0.081 Sum_probs=53.3
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCccccc----cccCCCCCCCCeeEEEcCCCCCCCCCCCcCCHHH
Q 036519 14 LAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISK----SLHRDPSSSISIPLETISDGYDEGRSAQAETDQA 89 (365)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~----~v~~~~~~~~gi~~~~l~~~~~~~~~~~~~~~~~ 89 (365)
..+++++..+ ...+++++.|.+.|.+|..+.+....+ .+.. ...++..+ +. +
T Consensus 324 Gk~vaI~~~~-----~~~~~la~~l~ElGm~v~~~~~~~~~~~~~~~l~~--~~~~~~~v--~~------------d--- 379 (475)
T PRK14478 324 GKRVLLYTGG-----VKSWSVVKALQELGMEVVGTSVKKSTDEDKERIKE--LMGPDAHM--ID------------D--- 379 (475)
T ss_pred CCEEEEEcCC-----chHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHH--HcCCCcEE--Ee------------C---
Confidence 4567765444 345688888999999999876554322 2211 00001000 00 0
Q ss_pred HHHHHHHHhHHHHHHHHHhcCCCcEEEEcCCCccHHHHHHHhCCceEE
Q 036519 90 YVDRFWQIGVQTLTELVERMNDVDCIVYDSFLPWALDVAKKFGLTGAA 137 (365)
Q Consensus 90 ~~~~~~~~~~~~l~~ll~~~~~pD~vv~D~~~~~a~~~A~~~giP~v~ 137 (365)
.....+.+++++. +||++|.. .....+|+++|||++.
T Consensus 380 -------~~~~e~~~~i~~~-~pDliig~---s~~~~~a~k~giP~~~ 416 (475)
T PRK14478 380 -------ANPRELYKMLKEA-KADIMLSG---GRSQFIALKAGMPWLD 416 (475)
T ss_pred -------CCHHHHHHHHhhc-CCCEEEec---CchhhhhhhcCCCEEE
Confidence 0012344556666 99999987 5577999999999984
No 241
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=63.47 E-value=11 Score=34.03 Aligned_cols=49 Identities=12% Similarity=0.177 Sum_probs=35.3
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCccccccccCCCCCCCCeeEEE
Q 036519 12 SKLAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLHRDPSSSISIPLET 71 (365)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~~~~~~~~gi~~~~ 71 (365)
..+|||+++-.|+.| ..+|..|++.||+|+++.-... +.+.+ .|+.+..
T Consensus 3 ~~~m~I~IiG~GaiG-----~~lA~~L~~~g~~V~~~~r~~~-~~~~~-----~g~~~~~ 51 (313)
T PRK06249 3 SETPRIGIIGTGAIG-----GFYGAMLARAGFDVHFLLRSDY-EAVRE-----NGLQVDS 51 (313)
T ss_pred CcCcEEEEECCCHHH-----HHHHHHHHHCCCeEEEEEeCCH-HHHHh-----CCeEEEe
Confidence 456899999888777 4567889999999999987653 34443 4555443
No 242
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=63.36 E-value=12 Score=33.47 Aligned_cols=57 Identities=21% Similarity=0.373 Sum_probs=40.8
Q ss_pred hhcccccccccccCChhhHHHHHH----cCCCeeeccccCchhhHHHHHHhHhcceeEecCCCCCcccHHHHHHHHHHHh
Q 036519 254 VLAHEATGCFLTHCGWNSTIEALR----LGVPMLAMPLWTDQSTNSKYVMDVWKMGLKVPADEKGIVRREAIAHCIGEIL 329 (365)
Q Consensus 254 ~L~~~~~~~~I~hgG~gs~~eal~----~GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll 329 (365)
+...+|+ +|+=||-||+..++. .++|++.+-.. .+| .+. +.+++++.+++.+++
T Consensus 61 ~~~~~dl--vi~lGGDGT~L~aa~~~~~~~~PilGIN~G--------------~lG-FLt-----~~~~~~~~~~l~~i~ 118 (292)
T PRK01911 61 LDGSADM--VISIGGDGTFLRTATYVGNSNIPILGINTG--------------RLG-FLA-----TVSKEEIEETIDELL 118 (292)
T ss_pred cccCCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEecC--------------CCC-ccc-----ccCHHHHHHHHHHHH
Confidence 3345788 999999999999987 37787776431 122 222 567888888998888
Q ss_pred cCH
Q 036519 330 EGD 332 (365)
Q Consensus 330 ~~~ 332 (365)
++.
T Consensus 119 ~g~ 121 (292)
T PRK01911 119 NGD 121 (292)
T ss_pred cCC
Confidence 763
No 243
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=62.86 E-value=40 Score=31.78 Aligned_cols=89 Identities=13% Similarity=0.105 Sum_probs=52.2
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCccccc-c---ccCCCCCCCCeeEEEcCCCCCCCCCCCcCCHHH
Q 036519 14 LAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISK-S---LHRDPSSSISIPLETISDGYDEGRSAQAETDQA 89 (365)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~-~---v~~~~~~~~gi~~~~l~~~~~~~~~~~~~~~~~ 89 (365)
..+++++..+.+ .+.+++.|.+.|.+|..+++..... . +.+ . .+...+.+. .
T Consensus 287 gkrv~i~~~~~~-----~~~la~~l~elGm~v~~~~~~~~~~~~~~~~~~--~--~~~~~~v~~----------~----- 342 (410)
T cd01968 287 GKKAALYTGGVK-----SWSLVSALQDLGMEVVATGTQKGTKEDYERIKE--L--LGEGTVIVD----------D----- 342 (410)
T ss_pred CCEEEEEcCCch-----HHHHHHHHHHCCCEEEEEecccCCHHHHHHHHH--H--hCCCcEEEe----------C-----
Confidence 456766554332 3778888989999998886544321 1 111 0 000000000 0
Q ss_pred HHHHHHHHhHHHHHHHHHhcCCCcEEEEcCCCccHHHHHHHhCCceEE
Q 036519 90 YVDRFWQIGVQTLTELVERMNDVDCIVYDSFLPWALDVAKKFGLTGAA 137 (365)
Q Consensus 90 ~~~~~~~~~~~~l~~ll~~~~~pD~vv~D~~~~~a~~~A~~~giP~v~ 137 (365)
.....+.+.++.. +||+++.... ...+|+++|+|++.
T Consensus 343 -------~~~~e~~~~i~~~-~pDl~ig~s~---~~~~a~~~gip~~~ 379 (410)
T cd01968 343 -------ANPRELKKLLKEK-KADLLVAGGK---ERYLALKLGIPFCD 379 (410)
T ss_pred -------CCHHHHHHHHhhc-CCCEEEECCc---chhhHHhcCCCEEE
Confidence 1112345666777 9999998843 56889999999985
No 244
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=62.69 E-value=33 Score=29.92 Aligned_cols=36 Identities=25% Similarity=0.143 Sum_probs=30.8
Q ss_pred EEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCccc
Q 036519 18 LVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFI 53 (365)
Q Consensus 18 l~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~ 53 (365)
+|..-|+-|...-..++|..++++|++|.++..+..
T Consensus 4 ~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~ 39 (254)
T cd00550 4 FFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPA 39 (254)
T ss_pred EEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCc
Confidence 444458999999999999999999999999987653
No 245
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=61.84 E-value=35 Score=29.90 Aligned_cols=38 Identities=18% Similarity=0.096 Sum_probs=32.7
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCcc
Q 036519 15 AHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYF 52 (365)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~ 52 (365)
.-+++...|+.|-..=++.++...+++|..|.|++++.
T Consensus 37 s~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee 74 (259)
T TIGR03878 37 SVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVES 74 (259)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecC
Confidence 34677777899999999999998888999999999874
No 246
>PRK09620 hypothetical protein; Provisional
Probab=61.79 E-value=16 Score=31.28 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=18.6
Q ss_pred HHHHHHHHHhCCCeEEEEeCcc
Q 036519 31 LLQFSKRLEHNGIKVTLVTTYF 52 (365)
Q Consensus 31 ~l~la~~L~~~Gh~Vt~~~~~~ 52 (365)
...||++|.++|++|+++..+.
T Consensus 32 Gs~LA~~L~~~Ga~V~li~g~~ 53 (229)
T PRK09620 32 GRIIAEELISKGAHVIYLHGYF 53 (229)
T ss_pred HHHHHHHHHHCCCeEEEEeCCC
Confidence 4788999999999999987653
No 247
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=61.77 E-value=5.8 Score=30.62 Aligned_cols=35 Identities=20% Similarity=0.191 Sum_probs=28.1
Q ss_pred CCCChHHHHHHHHHHHhCCCeEEEEeCcccccccc
Q 036519 24 AQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLH 58 (365)
Q Consensus 24 ~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~ 58 (365)
..-.+--.+-++..|+++||+|++.+++.....++
T Consensus 9 ~Pvq~p~alYl~~~Lk~~G~~v~Va~npAA~kLl~ 43 (139)
T PF09001_consen 9 VPVQTPSALYLSYKLKKKGFEVVVAGNPAALKLLE 43 (139)
T ss_dssp STTHHHHHHHHHHHHHCTTEEEEEEE-HHHHHHHH
T ss_pred CcchhHHHHHHHHHHHhcCCeEEEecCHHHHhHhh
Confidence 34455567889999999999999999998887776
No 248
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.50 E-value=46 Score=29.44 Aligned_cols=109 Identities=17% Similarity=0.117 Sum_probs=65.7
Q ss_pred CCeEEeecchhh---hhcccccccccccCChhhHHHHHHcCCCee--eccccCchhhHHHHHHhHhcceeEecCCCCCcc
Q 036519 242 KGLVVNWCPQLG---VLAHEATGCFLTHCGWNSTIEALRLGVPML--AMPLWTDQSTNSKYVMDVWKMGLKVPADEKGIV 316 (365)
Q Consensus 242 ~~~~~~~~p~~~---~L~~~~~~~~I~hgG~gs~~eal~~GvP~v--~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~ 316 (365)
++-+.+|+||+. +|.-||+ -+-+ |--|.--|..+|.|.+ ++|+..+-. -+.++..|-- .- -.
T Consensus 239 rvvklPFvpqddyd~LL~lcD~--n~VR-GEDSFVRAq~agkPflWHIYpQdentH--l~KLeaFldk--y~------~~ 305 (370)
T COG4394 239 RVVKLPFVPQDDYDELLWLCDF--NLVR-GEDSFVRAQLAGKPFLWHIYPQDENTH--LAKLEAFLDK--YC------PF 305 (370)
T ss_pred EEEEecCCcHhHHHHHHHhccc--ceee-cchHHHHHHHcCCCcEEEecCCccccH--HHHHHHHHHH--hC------CC
Confidence 344568999774 8999998 4445 6678889999999986 455433221 1222222100 00 11
Q ss_pred cHHHHHHHHHHHhc--------C---------HHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcc
Q 036519 317 RREAIAHCIGEILE--------G---------DKWRNFAKEAVAKGGSSDKNIDDFVANLISSK 363 (365)
Q Consensus 317 ~~~~l~~~i~~ll~--------~---------~~~~~~a~~~~~~~g~s~~~~~~~~~~i~~~~ 363 (365)
-+.+..+++++... + +++|+.|++.+...+..-...++++.++++..
T Consensus 306 lp~~~a~alrt~~~~~N~~~ls~~w~~f~~~~~~~r~~a~~wa~~l~~~~dlaekLvaF~ek~~ 369 (370)
T COG4394 306 LPPNTAKALRTFWIAWNAGRLSDDWSYFFKNLKEWREHAKKWANHLIKNPDLAEKLVAFIEKIG 369 (370)
T ss_pred CCHHHHHHHHHHHHHhcCCcccccHHHHHHhhHHHHHHHHHHHHHHccCccHHHHHHHHHHHhc
Confidence 12223333333321 0 26788899888887777778889999888653
No 249
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=60.89 E-value=7.5 Score=31.80 Aligned_cols=69 Identities=10% Similarity=0.178 Sum_probs=42.9
Q ss_pred cccccccccccCChhhHHHHHHcCCCeeeccccC-----------------------chhhHHHHHHhHhcceeEecCCC
Q 036519 256 AHEATGCFLTHCGWNSTIEALRLGVPMLAMPLWT-----------------------DQSTNSKYVMDVWKMGLKVPADE 312 (365)
Q Consensus 256 ~~~~~~~~I~hgG~gs~~eal~~GvP~v~~P~~~-----------------------DQ~~nA~~v~~~~G~G~~~~~~~ 312 (365)
..+++ +|++||...+..... ++|+|-+|... +...+...+++.+|+-+....-
T Consensus 33 ~g~dV--iIsRG~ta~~lr~~~-~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll~~~i~~~~~- 108 (176)
T PF06506_consen 33 EGADV--IISRGGTAELLRKHV-SIPVVEIPISGFDILRALAKAKKYGPKIAVVGYPNIIPGLESIEELLGVDIKIYPY- 108 (176)
T ss_dssp TT-SE--EEEEHHHHHHHHCC--SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHHT-EEEEEEE-
T ss_pred cCCeE--EEECCHHHHHHHHhC-CCCEEEECCCHhHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHhCCceEEEEE-
Confidence 45566 999999998888877 99999999632 2333456666655665555432
Q ss_pred CCcccHHHHHHHHHHHhcC
Q 036519 313 KGIVRREAIAHCIGEILEG 331 (365)
Q Consensus 313 ~~~~~~~~l~~~i~~ll~~ 331 (365)
-+.+++...|.++..+
T Consensus 109 ---~~~~e~~~~i~~~~~~ 124 (176)
T PF06506_consen 109 ---DSEEEIEAAIKQAKAE 124 (176)
T ss_dssp ---SSHHHHHHHHHHHHHT
T ss_pred ---CCHHHHHHHHHHHHHc
Confidence 4678888888887643
No 250
>PLN02939 transferase, transferring glycosyl groups
Probab=60.52 E-value=18 Score=37.77 Aligned_cols=42 Identities=19% Similarity=0.256 Sum_probs=32.3
Q ss_pred CCCCcEEEEEcCC------CCCChHHHHHHHHHHHhCCCeEEEEeCcc
Q 036519 11 SSKLAHCLVLSYP------AQGHMNPLLQFSKRLEHNGIKVTLVTTYF 52 (365)
Q Consensus 11 ~~~~~~il~~~~~------~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~ 52 (365)
....|||+|++.- ..|=..-.=+|.++|+++||+|.++.+..
T Consensus 478 ~~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y 525 (977)
T PLN02939 478 TSSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKY 525 (977)
T ss_pred CCCCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 3568999999874 33444556678899999999999998754
No 251
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=60.40 E-value=21 Score=34.30 Aligned_cols=83 Identities=17% Similarity=0.263 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCccccccccCCCCCCCCeeEEEcC--CCCCCCCCCC---cCCHHHHHHHHHHHhHHHHH
Q 036519 29 NPLLQFSKRLEHNGIKVTLVTTYFISKSLHRDPSSSISIPLETIS--DGYDEGRSAQ---AETDQAYVDRFWQIGVQTLT 103 (365)
Q Consensus 29 ~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~~~~~~~~gi~~~~l~--~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~ 103 (365)
.-.+.+|+.|.+.|+++. +|....+.+++ .|+++..+. .++|+ .++. +-.+.-.-..+.+.-.+. .
T Consensus 11 ~~iv~lAk~L~~lGfeIi--ATgGTak~L~e-----~GI~v~~Vsk~TgfPE-il~GRVKTLHP~IhgGiLarr~~~~-~ 81 (511)
T TIGR00355 11 TGIVEFAQGLVERGVELL--STGGTAKLLAE-----AGVPVTEVSDYTGFPE-MMDGRVKTLHPKVHGGILARRGDDD-D 81 (511)
T ss_pred ccHHHHHHHHHHCCCEEE--EechHHHHHHH-----CCCeEEEeecccCCch-hhCCccccCCchhhhhhhcCCCchH-H
Confidence 346899999999999984 77777778887 788888875 36676 3332 222222222233333333 3
Q ss_pred HHHHhcC--CCcEEEEcCC
Q 036519 104 ELVERMN--DVDCIVYDSF 120 (365)
Q Consensus 104 ~ll~~~~--~pD~vv~D~~ 120 (365)
+-+++.. ..|+||++..
T Consensus 82 ~~l~~~~I~~IDlVvvNLY 100 (511)
T TIGR00355 82 ADLEEHGIEPIDLVVVNLY 100 (511)
T ss_pred HHHHHcCCCceeEEEEecc
Confidence 3344443 8899998843
No 252
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=60.36 E-value=9.9 Score=31.17 Aligned_cols=43 Identities=14% Similarity=0.130 Sum_probs=33.9
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCccccccccC
Q 036519 16 HCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLHR 59 (365)
Q Consensus 16 ~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~~ 59 (365)
||++...|+.| ..-...+.++|+++|++|.++.++...+++..
T Consensus 2 ~I~lgvtGs~~-a~~~~~ll~~L~~~g~~V~vi~T~~A~~fi~~ 44 (177)
T TIGR02113 2 KILLAVTGSIA-AYKAADLTSQLTKLGYDVTVLMTQAATQFITP 44 (177)
T ss_pred EEEEEEcCHHH-HHHHHHHHHHHHHCCCEEEEEEChHHHhhccH
Confidence 56666666554 45667999999999999999999988777763
No 253
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=60.10 E-value=82 Score=28.71 Aligned_cols=105 Identities=12% Similarity=0.055 Sum_probs=66.9
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEeCccccccccCCCCCCCCee-EEEcCCCCCCCCCCCcCCHHHHHH
Q 036519 16 HCLVLSYPAQGHMNPLLQFSKRLEHN--GIKVTLVTTYFISKSLHRDPSSSISIP-LETISDGYDEGRSAQAETDQAYVD 92 (365)
Q Consensus 16 ~il~~~~~~~GH~~p~l~la~~L~~~--Gh~Vt~~~~~~~~~~v~~~~~~~~gi~-~~~l~~~~~~~~~~~~~~~~~~~~ 92 (365)
|||++-..+.|++.-..++.+.|+++ +.+|++++.+.+.+.++. .+.++ ++.++.... .....
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~~~----~p~vd~vi~~~~~~~------~~~~~---- 66 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPILSE----NPDINALYGLDRKKA------KAGER---- 66 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHHhc----CCCccEEEEeChhhh------cchHH----
Confidence 58999999999999999999999996 789999999988877774 13343 333331100 00001
Q ss_pred HHHHHhHHHHHHHHHhcCCCcEEEEcCCCccHHHHHHHhCCceEE
Q 036519 93 RFWQIGVQTLTELVERMNDVDCIVYDSFLPWALDVAKKFGLTGAA 137 (365)
Q Consensus 93 ~~~~~~~~~l~~ll~~~~~pD~vv~D~~~~~a~~~A~~~giP~v~ 137 (365)
.+... .. +-..+++. +.|++|.=........++...|.|.-.
T Consensus 67 ~~~~~-~~-l~~~lr~~-~yD~vidl~~~~~s~ll~~l~~a~~ri 108 (344)
T TIGR02201 67 KLANQ-FH-LIKVLRAN-RYDLVVNLTDQWMVAILVKLLNARVKI 108 (344)
T ss_pred HHHHH-HH-HHHHHHhC-CCCEEEECCcchHHHHHHHhcCCCeEE
Confidence 11111 11 12223444 889988544444467788888888654
No 254
>PRK13768 GTPase; Provisional
Probab=59.92 E-value=66 Score=28.01 Aligned_cols=39 Identities=21% Similarity=0.195 Sum_probs=31.8
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCccc
Q 036519 15 AHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFI 53 (365)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~ 53 (365)
+-+++...++.|-..=+..++..|..+|++|.++..+..
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~ 41 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPA 41 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCc
Confidence 345666667889999999999999999999999876543
No 255
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=59.91 E-value=14 Score=33.35 Aligned_cols=55 Identities=18% Similarity=0.347 Sum_probs=39.5
Q ss_pred cccccccccccCChhhHHHHHHc----CCCeeeccccCchhhHHHHHHhHhcceeEecCCCCCcccHHHHHHHHHHHhcC
Q 036519 256 AHEATGCFLTHCGWNSTIEALRL----GVPMLAMPLWTDQSTNSKYVMDVWKMGLKVPADEKGIVRREAIAHCIGEILEG 331 (365)
Q Consensus 256 ~~~~~~~~I~hgG~gs~~eal~~----GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~ 331 (365)
..+|+ +|+=||=||+..+.+. ++|++.+-. - .+|. +. +.+++++.+++.+++++
T Consensus 67 ~~~Dl--vi~iGGDGTlL~aar~~~~~~iPilGIN~-------------G-~lGF-Lt-----~~~~~~~~~~l~~l~~g 124 (305)
T PRK02649 67 SSMKF--AIVLGGDGTVLSAARQLAPCGIPLLTINT-------------G-HLGF-LT-----EAYLNQLDEAIDQVLAG 124 (305)
T ss_pred cCcCE--EEEEeCcHHHHHHHHHhcCCCCcEEEEeC-------------C-CCcc-cc-----cCCHHHHHHHHHHHHcC
Confidence 45777 9999999999999774 778777632 1 1221 22 46788888999998876
Q ss_pred H
Q 036519 332 D 332 (365)
Q Consensus 332 ~ 332 (365)
.
T Consensus 125 ~ 125 (305)
T PRK02649 125 Q 125 (305)
T ss_pred C
Confidence 4
No 256
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=59.51 E-value=56 Score=31.62 Aligned_cols=106 Identities=12% Similarity=0.041 Sum_probs=68.6
Q ss_pred CeEEeecchhh---hhcccccccccc---cCChhhHH-HHHHcCC----CeeeccccCchhhHHHHHHhHhcceeEecCC
Q 036519 243 GLVVNWCPQLG---VLAHEATGCFLT---HCGWNSTI-EALRLGV----PMLAMPLWTDQSTNSKYVMDVWKMGLKVPAD 311 (365)
Q Consensus 243 ~~~~~~~p~~~---~L~~~~~~~~I~---hgG~gs~~-eal~~Gv----P~v~~P~~~DQ~~nA~~v~~~~G~G~~~~~~ 311 (365)
+++.+.+|+.+ ++..+|+ ++. .-|+|.+. |+++++. |+|+=-+ |-..+.+ .-++.+++
T Consensus 364 ~~~~~~v~~~el~alYr~ADV--~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSef-------aGaa~~l-~~AllVNP- 432 (487)
T TIGR02398 364 QFFTRSLPYEEVSAWFAMADV--MWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEF-------AGAAVEL-KGALLTNP- 432 (487)
T ss_pred EEEcCCCCHHHHHHHHHhCCE--EEECccccccCcchhhHHhhhcCCCCCEEEecc-------ccchhhc-CCCEEECC-
Confidence 34556777665 7778888 554 45998776 9999877 5444333 1122445 55788884
Q ss_pred CCCcccHHHHHHHHHHHhcCH--HHHHHHHHHHHc--CCCcHHHHHHHHHHHHhcc
Q 036519 312 EKGIVRREAIAHCIGEILEGD--KWRNFAKEAVAK--GGSSDKNIDDFVANLISSK 363 (365)
Q Consensus 312 ~~~~~~~~~l~~~i~~ll~~~--~~~~~a~~~~~~--~g~s~~~~~~~~~~i~~~~ 363 (365)
.+.++++++|.++|+.+ +-+++.+++.+. ......=++.|++.+....
T Consensus 433 ----~d~~~~A~ai~~AL~m~~~Er~~R~~~l~~~v~~~d~~~W~~~fl~~l~~~~ 484 (487)
T TIGR02398 433 ----YDPVRMDETIYVALAMPKAEQQARMREMFDAVNYYDVQRWADEFLAAVSPQA 484 (487)
T ss_pred ----CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhhhcc
Confidence 68999999999999875 333444444333 2345666777777776543
No 257
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=59.41 E-value=7.3 Score=32.06 Aligned_cols=42 Identities=19% Similarity=0.317 Sum_probs=32.7
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCcccccccc
Q 036519 16 HCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLH 58 (365)
Q Consensus 16 ~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~ 58 (365)
||++-..|+-|-+. ...+.++|+++|++|.++.|+....++.
T Consensus 1 ~illgvtGsiaa~k-a~~lir~L~~~g~~V~vv~T~~A~~fv~ 42 (181)
T TIGR00421 1 RIVVAMTGASGVIY-GIRLLEVLKEAGVEVHLVISDWAKETIK 42 (181)
T ss_pred CEEEEEECHHHHHH-HHHHHHHHHHCCCEEEEEECccHHHHHH
Confidence 35555555555544 4889999999999999999998888875
No 258
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=59.36 E-value=74 Score=26.19 Aligned_cols=25 Identities=16% Similarity=0.317 Sum_probs=20.8
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhC
Q 036519 17 CLVLSYPAQGHMNPLLQFSKRLEHN 41 (365)
Q Consensus 17 il~~~~~~~GH~~p~l~la~~L~~~ 41 (365)
=.++-.|+.||..=|+.|-+.|.++
T Consensus 40 ~~lVvlGSGGHT~EMlrLl~~l~~~ 64 (211)
T KOG3339|consen 40 STLVVLGSGGHTGEMLRLLEALQDL 64 (211)
T ss_pred eEEEEEcCCCcHHHHHHHHHHHHhh
Confidence 3455578899999999999999775
No 259
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=59.33 E-value=24 Score=31.46 Aligned_cols=50 Identities=12% Similarity=0.121 Sum_probs=41.2
Q ss_pred hhccCCCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCcccccc
Q 036519 7 KASASSKLAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKS 56 (365)
Q Consensus 7 ~~~~~~~~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~ 56 (365)
.+..+++.-.|.+.-.|+.|--.=.=.|..+|+++||+|-++.-+...++
T Consensus 44 l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~ 93 (323)
T COG1703 44 LYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPF 93 (323)
T ss_pred HhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCC
Confidence 35566677789999999999999999999999999999998865544433
No 260
>PRK07206 hypothetical protein; Provisional
Probab=59.23 E-value=44 Score=31.48 Aligned_cols=33 Identities=12% Similarity=0.119 Sum_probs=23.2
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCcc
Q 036519 15 AHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYF 52 (365)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~ 52 (365)
++++++-.... ...++++++++|++++.++...
T Consensus 3 k~~liv~~~~~-----~~~~~~a~~~~G~~~v~v~~~~ 35 (416)
T PRK07206 3 KKVVIVDPFSS-----GKFLAPAFKKRGIEPIAVTSSC 35 (416)
T ss_pred CeEEEEcCCch-----HHHHHHHHHHcCCeEEEEEcCC
Confidence 34666655333 3568999999999998887654
No 261
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=59.21 E-value=8.2 Score=33.96 Aligned_cols=42 Identities=17% Similarity=0.189 Sum_probs=34.4
Q ss_pred CeEEeecchhhhhcccccccccccCChhhHHHHHHcCCCeeeccc
Q 036519 243 GLVVNWCPQLGVLAHEATGCFLTHCGWNSTIEALRLGVPMLAMPL 287 (365)
Q Consensus 243 ~~~~~~~p~~~~L~~~~~~~~I~hgG~gs~~eal~~GvP~v~~P~ 287 (365)
+.+.+-++-.+++.+|+. |||-.+ ++=.||+.+|+|++++..
T Consensus 185 ~~~~~~~~~~~Ll~~s~~--VvtinS-tvGlEAll~gkpVi~~G~ 226 (269)
T PF05159_consen 185 VIIDDDVNLYELLEQSDA--VVTINS-TVGLEALLHGKPVIVFGR 226 (269)
T ss_pred EEECCCCCHHHHHHhCCE--EEEECC-HHHHHHHHcCCceEEecC
Confidence 344556777889999999 888865 477899999999999874
No 262
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=59.04 E-value=14 Score=33.09 Aligned_cols=57 Identities=18% Similarity=0.241 Sum_probs=40.5
Q ss_pred hhcccccccccccCChhhHHHHHH----cCCCeeeccccCchhhHHHHHHhHhcceeEecCCCCCcccHHHHHHHHHHHh
Q 036519 254 VLAHEATGCFLTHCGWNSTIEALR----LGVPMLAMPLWTDQSTNSKYVMDVWKMGLKVPADEKGIVRREAIAHCIGEIL 329 (365)
Q Consensus 254 ~L~~~~~~~~I~hgG~gs~~eal~----~GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll 329 (365)
+...+|+ +|+=||=||+..+.+ .++|++.+-.. .+|. +. +++++++.+++.+++
T Consensus 65 ~~~~~D~--vi~lGGDGT~L~aa~~~~~~~~PilGIN~G--------------~lGF-L~-----~~~~~~~~~~l~~i~ 122 (296)
T PRK04539 65 LGQYCDL--VAVLGGDGTFLSVAREIAPRAVPIIGINQG--------------HLGF-LT-----QIPREYMTDKLLPVL 122 (296)
T ss_pred cCcCCCE--EEEECCcHHHHHHHHHhcccCCCEEEEecC--------------CCeE-ee-----ccCHHHHHHHHHHHH
Confidence 3346788 999999999999975 37787776421 1232 22 467888999999998
Q ss_pred cCH
Q 036519 330 EGD 332 (365)
Q Consensus 330 ~~~ 332 (365)
++.
T Consensus 123 ~g~ 125 (296)
T PRK04539 123 EGK 125 (296)
T ss_pred cCC
Confidence 763
No 263
>PRK13196 pyrrolidone-carboxylate peptidase; Provisional
Probab=58.62 E-value=33 Score=28.99 Aligned_cols=69 Identities=10% Similarity=0.204 Sum_probs=44.1
Q ss_pred CcEEEEEcCCCCCC--hHHHHHHHHHHHhCCCeEEEEeCccccccccCCCCCCCCeeEEEcCCCCCCCCCCCcCCHHHHH
Q 036519 14 LAHCLVLSYPAQGH--MNPLLQFSKRLEHNGIKVTLVTTYFISKSLHRDPSSSISIPLETISDGYDEGRSAQAETDQAYV 91 (365)
Q Consensus 14 ~~~il~~~~~~~GH--~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~~~~~~~~gi~~~~l~~~~~~~~~~~~~~~~~~~ 91 (365)
||+||+..+.-+|. .||.-.++++|.... +.. ..+....+|..+.
T Consensus 1 m~~ILvTGF~PF~~~~~NPS~~~~~~L~~~~--------------~~~-----~~v~~~~LPV~~~-------------- 47 (211)
T PRK13196 1 MPTLLLTGFEPFHTHPVNPSAQAAQALNGEQ--------------AGA-----LRVHSALLPVEPR-------------- 47 (211)
T ss_pred CCEEEEEeecCCCCCCCCcHHHHHHhccccc--------------CCC-----cEEEEEEeCCChh--------------
Confidence 68999888865554 899999999996531 111 2244445553222
Q ss_pred HHHHHHhHHHHHHHHHhcCCCcEEEEcCCC
Q 036519 92 DRFWQIGVQTLTELVERMNDVDCIVYDSFL 121 (365)
Q Consensus 92 ~~~~~~~~~~l~~ll~~~~~pD~vv~D~~~ 121 (365)
...+.+.+++++. +||+||+=...
T Consensus 48 -----~~~~~l~~~~~~~-~Pd~vi~~G~a 71 (211)
T PRK13196 48 -----AAMAALSRLLDEL-QPSAVLLTGLA 71 (211)
T ss_pred -----HHHHHHHHHHHHh-CCCEEEEeccc
Confidence 1233567777888 99999965443
No 264
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=58.56 E-value=1e+02 Score=27.11 Aligned_cols=44 Identities=14% Similarity=0.172 Sum_probs=39.8
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCC--CeEEEEeCccccccccC
Q 036519 16 HCLVLSYPAQGHMNPLLQFSKRLEHNG--IKVTLVTTYFISKSLHR 59 (365)
Q Consensus 16 ~il~~~~~~~GH~~p~l~la~~L~~~G--h~Vt~~~~~~~~~~v~~ 59 (365)
|||++-..+.|++.-+.++.++|+++. .+|++++.+.+.+.++.
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~~ 46 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLEL 46 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHhc
Confidence 589999999999999999999999974 89999999988887774
No 265
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=57.96 E-value=1.1e+02 Score=32.51 Aligned_cols=92 Identities=12% Similarity=0.003 Sum_probs=55.1
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCccccc----cccCCCCCCCCeeEEEcCCCCCCCCCCCcCCHH
Q 036519 13 KLAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISK----SLHRDPSSSISIPLETISDGYDEGRSAQAETDQ 88 (365)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~----~v~~~~~~~~gi~~~~l~~~~~~~~~~~~~~~~ 88 (365)
+..|++++..|. -.+.+++.|.+-|-+|..+++..... .+.+ ....+... +. ..+
T Consensus 319 ~GKrv~i~~g~~-----~~~~la~~l~elGmevv~~g~~~~~~~d~~~~~~--~~~~~~~v--i~----------~~d-- 377 (917)
T PRK14477 319 EGKRVVLFTGGV-----KTWSMVNALRELGVEVLAAGTQNSTLEDFARMKA--LMHKDAHI--IE----------DTS-- 377 (917)
T ss_pred cCCEEEEECCCc-----hHHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHH--hcCCCCEE--EE----------CCC--
Confidence 456788876553 36778889999999998766543321 1111 00000000 00 011
Q ss_pred HHHHHHHHHhHHHHHHHHHhcCCCcEEEEcCCCccHHHHHHHhCCceEEEe
Q 036519 89 AYVDRFWQIGVQTLTELVERMNDVDCIVYDSFLPWALDVAKKFGLTGAAFL 139 (365)
Q Consensus 89 ~~~~~~~~~~~~~l~~ll~~~~~pD~vv~D~~~~~a~~~A~~~giP~v~~~ 139 (365)
...+.+++++. +||++|.... ...+|+++|||++...
T Consensus 378 ----------~~el~~~i~~~-~pDLlig~~~---~~~~a~k~giP~~~~~ 414 (917)
T PRK14477 378 ----------TAGLLRVMREK-MPDLIVAGGK---TKFLALKTRTPFLDIN 414 (917)
T ss_pred ----------HHHHHHHHHhc-CCCEEEecCc---hhhHHHHcCCCeEEcc
Confidence 12345666677 9999998644 5778999999999543
No 266
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=57.68 E-value=13 Score=34.79 Aligned_cols=34 Identities=18% Similarity=0.206 Sum_probs=27.0
Q ss_pred cCCCCCChHHHHHHHHHHHhCCCeEE-EEeCcccc
Q 036519 21 SYPAQGHMNPLLQFSKRLEHNGIKVT-LVTTYFIS 54 (365)
Q Consensus 21 ~~~~~GH~~p~l~la~~L~~~Gh~Vt-~~~~~~~~ 54 (365)
+..+.|-..-.+.|.++|++||++|. |=+.|++.
T Consensus 8 ~~SG~GKTTvT~glm~aL~~rg~~VqpfKvGPDYI 42 (451)
T COG1797 8 TSSGSGKTTVTLGLMRALRRRGLKVQPFKVGPDYI 42 (451)
T ss_pred CCCCCcHHHHHHHHHHHHHhcCCcccccccCCCcc
Confidence 34578999999999999999999997 43555543
No 267
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=57.62 E-value=22 Score=30.24 Aligned_cols=102 Identities=16% Similarity=0.048 Sum_probs=56.7
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCccccccccCCCCCCCCeeEEEcCCCCCCCCCCCcCCHHHHHHHH
Q 036519 15 AHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLHRDPSSSISIPLETISDGYDEGRSAQAETDQAYVDRF 94 (365)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~~~~~~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ 94 (365)
.-+++...|+.|-..=++.++..-.++|..|.|++.+...+.+.+ .....++++..+-+. .- ... ...... ....
T Consensus 17 ~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~-~~~~~~~~~~~~~~~-~l-~~~-~~~~~~-~~~~ 91 (224)
T TIGR03880 17 HVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILG-YAKSKGWDLEDYIDK-SL-YIV-RLDPSD-FKTS 91 (224)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHH-HHHHcCCChHHHHhC-Ce-EEE-ecCHHH-HHhh
Confidence 346667778999988888888887778999999999876655442 111122222111000 00 000 001111 1112
Q ss_pred HHHhHHHHHHHHHhcCCCcEEEEcCCCc
Q 036519 95 WQIGVQTLTELVERMNDVDCIVYDSFLP 122 (365)
Q Consensus 95 ~~~~~~~l~~ll~~~~~pD~vv~D~~~~ 122 (365)
.......+..++++. +++.||.|.+..
T Consensus 92 ~~~l~~~~~~~i~~~-~~~~vVIDsls~ 118 (224)
T TIGR03880 92 LNRIKNELPILIKEL-GASRVVIDPISL 118 (224)
T ss_pred HHHHHHHHHHHHHHh-CCCEEEEcChHH
Confidence 223334556667777 899999996653
No 268
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=57.30 E-value=97 Score=27.51 Aligned_cols=41 Identities=12% Similarity=0.191 Sum_probs=33.6
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCcccccccc
Q 036519 13 KLAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLH 58 (365)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~ 58 (365)
.+++|+++-.|..|.. +|+.|+++||.|.+++-+...+...
T Consensus 2 ~~~~v~IvG~GliG~s-----~a~~l~~~g~~v~i~g~d~~~~~~~ 42 (279)
T COG0287 2 ASMKVGIVGLGLMGGS-----LARALKEAGLVVRIIGRDRSAATLK 42 (279)
T ss_pred CCcEEEEECCchHHHH-----HHHHHHHcCCeEEEEeecCcHHHHH
Confidence 3678899988888864 7899999999999999887766554
No 269
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=57.24 E-value=60 Score=25.87 Aligned_cols=28 Identities=14% Similarity=0.195 Sum_probs=24.6
Q ss_pred cCCCCCChHHHHHHHHHHHhCCCeEEEE
Q 036519 21 SYPAQGHMNPLLQFSKRLEHNGIKVTLV 48 (365)
Q Consensus 21 ~~~~~GH~~p~l~la~~L~~~Gh~Vt~~ 48 (365)
+.++-|-..=.+.|+..|.++|.+|.++
T Consensus 5 t~~~~GKT~va~~L~~~l~~~g~~V~~~ 32 (166)
T TIGR00347 5 TDTGVGKTVASSALAAKLKKAGYSVGYY 32 (166)
T ss_pred CCCCccHHHHHHHHHHHHHHCCCcEEEE
Confidence 3467788999999999999999999885
No 270
>PRK04328 hypothetical protein; Provisional
Probab=57.04 E-value=1.2e+02 Score=26.27 Aligned_cols=44 Identities=16% Similarity=-0.073 Sum_probs=33.8
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCccccccc
Q 036519 14 LAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSL 57 (365)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v 57 (365)
..-+++.-.|+.|-..=.+.++.+-.++|..+.|++++...+.+
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~~~~i 66 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEHPVQV 66 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCCHHHH
Confidence 34567777889999888888777766789999999987655443
No 271
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=56.96 E-value=30 Score=31.49 Aligned_cols=40 Identities=18% Similarity=0.328 Sum_probs=28.4
Q ss_pred hHHHHHHHHHhcCCCcEEEEcCCCcc----------HHHHHHHhCCceEEE
Q 036519 98 GVQTLTELVERMNDVDCIVYDSFLPW----------ALDVAKKFGLTGAAF 138 (365)
Q Consensus 98 ~~~~l~~ll~~~~~pD~vv~D~~~~~----------a~~~A~~~giP~v~~ 138 (365)
....+-+++++. +||++|+-.-+-+ +..+.++++||.++-
T Consensus 68 a~~~i~~mv~~~-~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vta 117 (349)
T PF07355_consen 68 ALKKILEMVKKL-KPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTA 117 (349)
T ss_pred HHHHHHHHHHhc-CCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEE
Confidence 344566777788 9999999855432 234566899999963
No 272
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=56.88 E-value=15 Score=33.00 Aligned_cols=56 Identities=20% Similarity=0.298 Sum_probs=40.4
Q ss_pred hcccccccccccCChhhHHHHHHc----CCCeeeccccCchhhHHHHHHhHhcceeEecCCCCCcccHHHHHHHHHHHhc
Q 036519 255 LAHEATGCFLTHCGWNSTIEALRL----GVPMLAMPLWTDQSTNSKYVMDVWKMGLKVPADEKGIVRREAIAHCIGEILE 330 (365)
Q Consensus 255 L~~~~~~~~I~hgG~gs~~eal~~----GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~ 330 (365)
...+|+ +|+=||-||+..+++. ++|++.+.. - .+|.-. +.+++++.++++++++
T Consensus 70 ~~~~D~--vi~lGGDGT~L~aar~~~~~~~PilGIN~-------------G-~lGFL~------~~~~~~~~~~l~~i~~ 127 (306)
T PRK03372 70 ADGCEL--VLVLGGDGTILRAAELARAADVPVLGVNL-------------G-HVGFLA------EAEAEDLDEAVERVVD 127 (306)
T ss_pred ccCCCE--EEEEcCCHHHHHHHHHhccCCCcEEEEec-------------C-CCceec------cCCHHHHHHHHHHHHc
Confidence 345788 9999999999998764 788877753 1 223222 4567888888888887
Q ss_pred CH
Q 036519 331 GD 332 (365)
Q Consensus 331 ~~ 332 (365)
+.
T Consensus 128 g~ 129 (306)
T PRK03372 128 RD 129 (306)
T ss_pred CC
Confidence 63
No 273
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=56.78 E-value=18 Score=30.40 Aligned_cols=34 Identities=15% Similarity=0.163 Sum_probs=25.2
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCcc
Q 036519 14 LAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYF 52 (365)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~ 52 (365)
||++.+.-.+-.| -.||++|.+.||+|++.+...
T Consensus 1 m~~~~i~GtGniG-----~alA~~~a~ag~eV~igs~r~ 34 (211)
T COG2085 1 MMIIAIIGTGNIG-----SALALRLAKAGHEVIIGSSRG 34 (211)
T ss_pred CcEEEEeccChHH-----HHHHHHHHhCCCeEEEecCCC
Confidence 5666666555444 578999999999999996543
No 274
>PRK12743 oxidoreductase; Provisional
Probab=56.76 E-value=78 Score=27.25 Aligned_cols=33 Identities=12% Similarity=0.207 Sum_probs=23.3
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 036519 15 AHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTT 50 (365)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~ 50 (365)
++.++++.++.| + -.++|++|.++|++|.++..
T Consensus 2 ~k~vlItGas~g-i--G~~~a~~l~~~G~~V~~~~~ 34 (256)
T PRK12743 2 AQVAIVTASDSG-I--GKACALLLAQQGFDIGITWH 34 (256)
T ss_pred CCEEEEECCCch-H--HHHHHHHHHHCCCEEEEEeC
Confidence 345566665433 3 47799999999999987753
No 275
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=56.63 E-value=31 Score=33.34 Aligned_cols=94 Identities=17% Similarity=0.209 Sum_probs=55.0
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCccccccccCCCCCCCCeeEEEcC--CCCCCCCCCC---cCCHHH
Q 036519 15 AHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLHRDPSSSISIPLETIS--DGYDEGRSAQ---AETDQA 89 (365)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~~~~~~~~gi~~~~l~--~~~~~~~~~~---~~~~~~ 89 (365)
+++++...- =.-++.+|+.|.+.|+++. +|....+.+++ .|+.+..+. .++|+ .++. +-.+.-
T Consensus 5 ~~aLISVsD----K~~iv~lAk~L~~lGfeI~--AT~GTak~L~e-----~GI~v~~V~k~TgfpE-il~GRVKTLHP~I 72 (513)
T PRK00881 5 KRALISVSD----KTGIVEFAKALVELGVEIL--STGGTAKLLAE-----AGIPVTEVSDVTGFPE-ILDGRVKTLHPKI 72 (513)
T ss_pred CEEEEEEeC----cccHHHHHHHHHHCCCEEE--EcchHHHHHHH-----CCCeeEEeecccCCch-hcCCccccCCchh
Confidence 455555443 4558899999999999984 66777777876 788888775 36676 3322 222222
Q ss_pred HHHHHHHHhHHHHHHHHHhcC--CCcEEEEcCC
Q 036519 90 YVDRFWQIGVQTLTELVERMN--DVDCIVYDSF 120 (365)
Q Consensus 90 ~~~~~~~~~~~~l~~ll~~~~--~pD~vv~D~~ 120 (365)
.-..+.+.-.+.-.+-+++.. ..|+||++..
T Consensus 73 hgGiLa~r~~~~h~~~l~~~~i~~IDlVvvNLY 105 (513)
T PRK00881 73 HGGILARRDNPEHVAALEEHGIEPIDLVVVNLY 105 (513)
T ss_pred hhhhccCCCCHHHHHHHHHcCCCceeEEEEeCc
Confidence 222222222222222333333 8899998843
No 276
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=56.55 E-value=50 Score=29.68 Aligned_cols=33 Identities=15% Similarity=0.203 Sum_probs=24.5
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCc
Q 036519 14 LAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTY 51 (365)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~ 51 (365)
+|||+|+..|.++ ...-++|.+.||+|.-+.|.
T Consensus 1 ~mkivF~GTp~fa-----~~~L~~L~~~~~eivaV~Tq 33 (307)
T COG0223 1 MMRIVFFGTPEFA-----VPSLEALIEAGHEIVAVVTQ 33 (307)
T ss_pred CcEEEEEcCchhh-----HHHHHHHHhCCCceEEEEeC
Confidence 6899999888654 44556777889999965543
No 277
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=56.16 E-value=1.2e+02 Score=25.16 Aligned_cols=57 Identities=18% Similarity=0.220 Sum_probs=36.7
Q ss_pred CcEEEEEcC---C-CCCChHHHH-HHHHHHHhCCCeEEEEeCccccccccCCCCCCCCeeEEEcC
Q 036519 14 LAHCLVLSY---P-AQGHMNPLL-QFSKRLEHNGIKVTLVTTYFISKSLHRDPSSSISIPLETIS 73 (365)
Q Consensus 14 ~~~il~~~~---~-~~GH~~p~l-~la~~L~~~Gh~Vt~~~~~~~~~~v~~~~~~~~gi~~~~l~ 73 (365)
|.||.++.. | .+|=+-=+. .|+..|+++||+|++.|.....+.-+ ....|++.+.+|
T Consensus 1 mkkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~~---~~y~gv~l~~i~ 62 (185)
T PF09314_consen 1 MKKIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDVTVYCRSDYYPYKE---FEYNGVRLVYIP 62 (185)
T ss_pred CceEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceEEEEEccCCCCCCC---cccCCeEEEEeC
Confidence 346666654 2 256555554 46888888999999998876553322 223677777776
No 278
>KOG4479 consensus Transcription factor e(y)2 [Transcription]
Probab=55.90 E-value=19 Score=24.80 Aligned_cols=29 Identities=10% Similarity=0.382 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHh
Q 036519 333 KWRNFAKEAVAKGGSSDKNIDDFVANLIS 361 (365)
Q Consensus 333 ~~~~~a~~~~~~~g~s~~~~~~~~~~i~~ 361 (365)
+++++++.+..+-|..+-.+++++..|.-
T Consensus 36 ~ik~mcrniimEkG~~n~tvdqL~AeitP 64 (92)
T KOG4479|consen 36 DIKEMCRNIIMEKGVDNITVDQLAAEITP 64 (92)
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHhCc
Confidence 88999999988888888899999988764
No 279
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=55.90 E-value=16 Score=31.61 Aligned_cols=36 Identities=17% Similarity=0.233 Sum_probs=23.7
Q ss_pred EEEEEcCC------CCCChHHHHHHHHHHHhCCCeEEEEeCc
Q 036519 16 HCLVLSYP------AQGHMNPLLQFSKRLEHNGIKVTLVTTY 51 (365)
Q Consensus 16 ~il~~~~~------~~GH~~p~l~la~~L~~~Gh~Vt~~~~~ 51 (365)
||++++.- ..|=-.-+-.|+++|+++||+|+++.+.
T Consensus 1 kIl~vt~E~~P~~k~GGLgdv~~~L~kaL~~~G~~V~Vi~P~ 42 (245)
T PF08323_consen 1 KILMVTSEYAPFAKVGGLGDVVGSLPKALAKQGHDVRVIMPK 42 (245)
T ss_dssp EEEEE-S-BTTTB-SSHHHHHHHHHHHHHHHTT-EEEEEEE-
T ss_pred CEEEEEcccCcccccCcHhHHHHHHHHHHHhcCCeEEEEEcc
Confidence 46666553 2344455678899999999999999865
No 280
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=55.90 E-value=14 Score=33.13 Aligned_cols=40 Identities=28% Similarity=0.257 Sum_probs=29.9
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCccccccccC
Q 036519 15 AHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLHR 59 (365)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~~ 59 (365)
|||+++-.|+.| ..+|..|.+.||+|+++..+...+.+.+
T Consensus 1 mkI~IiG~G~iG-----~~~a~~L~~~g~~V~~~~r~~~~~~~~~ 40 (305)
T PRK12921 1 MRIAVVGAGAVG-----GTFGGRLLEAGRDVTFLVRPKRAKALRE 40 (305)
T ss_pred CeEEEECCCHHH-----HHHHHHHHHCCCceEEEecHHHHHHHHh
Confidence 688888777776 4678889999999999887444444443
No 281
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=55.76 E-value=15 Score=31.72 Aligned_cols=43 Identities=12% Similarity=-0.041 Sum_probs=34.1
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEeCccccccccC
Q 036519 17 CLVLSYPAQGHMNPLLQFSKRLEHN--GIKVTLVTTYFISKSLHR 59 (365)
Q Consensus 17 il~~~~~~~GH~~p~l~la~~L~~~--Gh~Vt~~~~~~~~~~v~~ 59 (365)
|++--.|+.+=+.-.+.+.+.|+++ |++|.++-++...+.+..
T Consensus 2 i~~~itGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a~~~i~~ 46 (234)
T TIGR02700 2 IGWGITGAGHLLVESFQVMKELKREIEELRVSTFVSRAGEEVVRM 46 (234)
T ss_pred eEEEEeCccHhHHHHHHHHHHHHhhcCCCeEEEEEChhHHhHHhh
Confidence 4544445445557999999999999 999999999988888774
No 282
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=55.75 E-value=13 Score=30.39 Aligned_cols=47 Identities=13% Similarity=0.216 Sum_probs=39.0
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCccccccccC
Q 036519 13 KLAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLHR 59 (365)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~~ 59 (365)
+...++|...++.|-..=..++++++.++|+.|.|+..++....+..
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~ 92 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQ 92 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHC
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccc
Confidence 45679999999999999999999999999999999999988877774
No 283
>PLN02929 NADH kinase
Probab=55.64 E-value=17 Score=32.52 Aligned_cols=68 Identities=12% Similarity=0.183 Sum_probs=44.8
Q ss_pred hcccccccccccCChhhHHHHHHc---CCCeeeccccC------chhhHHHHHHhHhcceeEecCCCCCcccHHHHHHHH
Q 036519 255 LAHEATGCFLTHCGWNSTIEALRL---GVPMLAMPLWT------DQSTNSKYVMDVWKMGLKVPADEKGIVRREAIAHCI 325 (365)
Q Consensus 255 L~~~~~~~~I~hgG~gs~~eal~~---GvP~v~~P~~~------DQ~~nA~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i 325 (365)
...+|+ +|+-||-||+..+.+. ++|++.+=... +++.|... +.. -+|. +. ..+++++.+.+
T Consensus 62 ~~~~Dl--vi~lGGDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~~~-~~r-~lGf-L~-----~~~~~~~~~~L 131 (301)
T PLN02929 62 IRDVDL--VVAVGGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDEFD-ARR-STGH-LC-----AATAEDFEQVL 131 (301)
T ss_pred cCCCCE--EEEECCcHHHHHHHHHcCCCCcEEEEECCCcccccccccccccc-ccc-Cccc-cc-----cCCHHHHHHHH
Confidence 456677 9999999999998653 68887775431 12333311 111 2442 22 46789999999
Q ss_pred HHHhcCH
Q 036519 326 GEILEGD 332 (365)
Q Consensus 326 ~~ll~~~ 332 (365)
.+++++.
T Consensus 132 ~~il~g~ 138 (301)
T PLN02929 132 DDVLFGR 138 (301)
T ss_pred HHHHcCC
Confidence 9999763
No 284
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=55.55 E-value=19 Score=32.20 Aligned_cols=56 Identities=13% Similarity=0.237 Sum_probs=39.0
Q ss_pred hhcccccccccccCChhhHHHHHH----cCCCeeeccccCchhhHHHHHHhHhcceeEecCCCCCcccHHHHHHHHHHHh
Q 036519 254 VLAHEATGCFLTHCGWNSTIEALR----LGVPMLAMPLWTDQSTNSKYVMDVWKMGLKVPADEKGIVRREAIAHCIGEIL 329 (365)
Q Consensus 254 ~L~~~~~~~~I~hgG~gs~~eal~----~GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll 329 (365)
+...+|+ +|+=||-||+..++. +++|++.+-... + |. +. +++++++.+++.+++
T Consensus 60 ~~~~~d~--vi~lGGDGT~L~aa~~~~~~~~Pilgin~G~-----------l---GF-l~-----~~~~~~~~~~l~~i~ 117 (292)
T PRK03378 60 IGQQADL--AIVVGGDGNMLGAARVLARYDIKVIGINRGN-----------L---GF-LT-----DLDPDNALQQLSDVL 117 (292)
T ss_pred cCCCCCE--EEEECCcHHHHHHHHHhcCCCCeEEEEECCC-----------C---Cc-cc-----ccCHHHHHHHHHHHH
Confidence 3445778 999999999999975 367776664311 1 22 22 466888889998888
Q ss_pred cC
Q 036519 330 EG 331 (365)
Q Consensus 330 ~~ 331 (365)
++
T Consensus 118 ~g 119 (292)
T PRK03378 118 EG 119 (292)
T ss_pred cC
Confidence 65
No 285
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=55.46 E-value=1.1e+02 Score=33.02 Aligned_cols=45 Identities=20% Similarity=0.207 Sum_probs=33.7
Q ss_pred hccCCCCcEEEEEcCCCC--CCh----HHHHHHHHHHHhCCCeEEEEeCcc
Q 036519 8 ASASSKLAHCLVLSYPAQ--GHM----NPLLQFSKRLEHNGIKVTLVTTYF 52 (365)
Q Consensus 8 ~~~~~~~~~il~~~~~~~--GH~----~p~l~la~~L~~~Gh~Vt~~~~~~ 52 (365)
|.......||+++..|.. |+. .....++++|++.|++|+.+....
T Consensus 1 m~~~~~~~kvlviG~G~~~igq~~E~d~sg~q~~~aL~e~G~~vi~v~~np 51 (1068)
T PRK12815 1 MPKDTDIQKILVIGSGPIVIGQAAEFDYSGTQACLALKEEGYQVVLVNPNP 51 (1068)
T ss_pred CCCCCCCCEEEEECCCcchhcchhhhhhHHHHHHHHHHHcCCEEEEEeCCc
Confidence 444555678999888753 543 267789999999999999987654
No 286
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=55.46 E-value=51 Score=31.07 Aligned_cols=47 Identities=19% Similarity=0.208 Sum_probs=40.0
Q ss_pred CCCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCccccccc
Q 036519 11 SSKLAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSL 57 (365)
Q Consensus 11 ~~~~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v 57 (365)
.++|..|+++-.-+.|-..-+=-||..|.++|+.|.+++.+-+.+..
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA 143 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAA 143 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHH
Confidence 34466788888889999999999999999999999999988776443
No 287
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=55.34 E-value=1.2e+02 Score=26.94 Aligned_cols=87 Identities=13% Similarity=0.117 Sum_probs=50.7
Q ss_pred cCCCCcEEEEEcCCCCCChHHHHHHHHHHHh--CCCeEEEEeC--ccccccccCCCCCCCCeeEEEcCCCCCCCCCCCcC
Q 036519 10 ASSKLAHCLVLSYPAQGHMNPLLQFSKRLEH--NGIKVTLVTT--YFISKSLHRDPSSSISIPLETISDGYDEGRSAQAE 85 (365)
Q Consensus 10 ~~~~~~~il~~~~~~~GH~~p~l~la~~L~~--~Gh~Vt~~~~--~~~~~~v~~~~~~~~gi~~~~l~~~~~~~~~~~~~ 85 (365)
...++|||+++.++. |+- +-+|.++... .+++|.++.+ ++....+++ .|+++..++... .
T Consensus 85 ~~~~~~ri~vl~Sg~-g~n--l~al~~~~~~~~~~~~i~~visn~~~~~~lA~~-----~gIp~~~~~~~~-~------- 148 (286)
T PRK13011 85 DPAARPKVLIMVSKF-DHC--LNDLLYRWRIGELPMDIVGVVSNHPDLEPLAAW-----HGIPFHHFPITP-D------- 148 (286)
T ss_pred ecccCceEEEEEcCC-ccc--HHHHHHHHHcCCCCcEEEEEEECCccHHHHHHH-----hCCCEEEeCCCc-C-------
Confidence 355688999999985 443 3344444443 3689987644 333444554 688888775211 1
Q ss_pred CHHHHHHHHHHHhHHHHHHHHHhcCCCcEEEEcCCC
Q 036519 86 TDQAYVDRFWQIGVQTLTELVERMNDVDCIVYDSFL 121 (365)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~ll~~~~~pD~vv~D~~~ 121 (365)
+ .......+.+.+++. +||++|.-.+.
T Consensus 149 ~--------~~~~~~~~~~~l~~~-~~Dlivlagy~ 175 (286)
T PRK13011 149 T--------KPQQEAQVLDVVEES-GAELVVLARYM 175 (286)
T ss_pred c--------hhhhHHHHHHHHHHh-CcCEEEEeChh
Confidence 0 011122355667777 99999976443
No 288
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=55.18 E-value=13 Score=33.52 Aligned_cols=44 Identities=9% Similarity=0.128 Sum_probs=40.6
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEeCccccccccC
Q 036519 16 HCLVLSYPAQGHMNPLLQFSKRLEHN--GIKVTLVTTYFISKSLHR 59 (365)
Q Consensus 16 ~il~~~~~~~GH~~p~l~la~~L~~~--Gh~Vt~~~~~~~~~~v~~ 59 (365)
||+++-....|++.-..++.++|+++ +.+|++++.+.+.+.++.
T Consensus 1 ~ILiir~~~iGD~vl~~p~l~~Lr~~~P~a~I~~l~~~~~~~~~~~ 46 (319)
T TIGR02193 1 RILIVKTSSLGDVIHTLPALTDIKRALPDVEIDWVVEEGFADIVRL 46 (319)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHhCCCCEEEEEEChhHhhhhhc
Confidence 58999999999999999999999997 899999999999888774
No 289
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=55.09 E-value=22 Score=27.58 Aligned_cols=54 Identities=9% Similarity=-0.002 Sum_probs=41.8
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCcc----ccccccCCCCCCCCeeEEEcC
Q 036519 15 AHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYF----ISKSLHRDPSSSISIPLETIS 73 (365)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~----~~~~v~~~~~~~~gi~~~~l~ 73 (365)
.+|++-+.++.+|-.=---++..|.+.|++|+..+... +.+.+.+ .+..++.++
T Consensus 2 ~~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~~-----~~adiVglS 59 (134)
T TIGR01501 2 KTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKAAIE-----TKADAILVS 59 (134)
T ss_pred CeEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-----cCCCEEEEe
Confidence 57999999999999999888999999999999987653 3333333 455666554
No 290
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=55.07 E-value=15 Score=34.47 Aligned_cols=46 Identities=17% Similarity=0.101 Sum_probs=38.0
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCccccccccC
Q 036519 13 KLAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLHR 59 (365)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~~ 59 (365)
+++||++...|+. ...-...+.+.|++.|++|.++-++....++..
T Consensus 5 ~~k~IllgvTGsi-aa~k~~~lv~~L~~~g~~V~vv~T~~A~~fi~~ 50 (399)
T PRK05579 5 AGKRIVLGVSGGI-AAYKALELVRRLRKAGADVRVVMTEAAKKFVTP 50 (399)
T ss_pred CCCeEEEEEeCHH-HHHHHHHHHHHHHhCCCEEEEEECHhHHHHHhH
Confidence 4578888887776 455789999999999999999999988777763
No 291
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=54.77 E-value=58 Score=30.41 Aligned_cols=53 Identities=15% Similarity=0.166 Sum_probs=37.8
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCC-CeEEEEeCc-cccccccCCCCCCCCeeEEEcC
Q 036519 14 LAHCLVLSYPAQGHMNPLLQFSKRLEHNG-IKVTLVTTY-FISKSLHRDPSSSISIPLETIS 73 (365)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~la~~L~~~G-h~Vt~~~~~-~~~~~v~~~~~~~~gi~~~~l~ 73 (365)
||+|+++-.|.-|+ .+|.-|+++| ++|++++-. +..+.+.. ....++++..++
T Consensus 1 m~~ilviGaG~Vg~-----~va~~la~~~d~~V~iAdRs~~~~~~i~~--~~~~~v~~~~vD 55 (389)
T COG1748 1 MMKILVIGAGGVGS-----VVAHKLAQNGDGEVTIADRSKEKCARIAE--LIGGKVEALQVD 55 (389)
T ss_pred CCcEEEECCchhHH-----HHHHHHHhCCCceEEEEeCCHHHHHHHHh--hccccceeEEec
Confidence 67888888766665 4788899998 999999865 66666653 212356776665
No 292
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=54.76 E-value=27 Score=33.49 Aligned_cols=41 Identities=27% Similarity=0.270 Sum_probs=34.6
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCccccccc
Q 036519 17 CLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSL 57 (365)
Q Consensus 17 il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v 57 (365)
+++.-.|+.|-..=++.++..+.++|..|.|++.++..+.+
T Consensus 97 ilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi 137 (454)
T TIGR00416 97 ILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQI 137 (454)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHH
Confidence 56666789999999999999999999999999987665544
No 293
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=54.42 E-value=30 Score=29.53 Aligned_cols=31 Identities=16% Similarity=0.415 Sum_probs=27.8
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCCCe
Q 036519 14 LAHCLVLSYPAQGHMNPLLQFSKRLEHNGIK 44 (365)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~ 44 (365)
|.-|+|...|..|-......|.++|.++|++
T Consensus 1 MpLVvi~G~P~SGKstrA~~L~~~l~~~~~K 31 (281)
T KOG3062|consen 1 MPLVVICGLPCSGKSTRAVELREALKERGTK 31 (281)
T ss_pred CCeEEEeCCCCCCchhHHHHHHHHHHhhccc
Confidence 4457888889999999999999999999975
No 294
>PRK06179 short chain dehydrogenase; Provisional
Probab=54.12 E-value=1.4e+02 Score=25.78 Aligned_cols=32 Identities=9% Similarity=0.080 Sum_probs=23.0
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCc
Q 036519 17 CLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTY 51 (365)
Q Consensus 17 il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~ 51 (365)
.++++.+ .|-+ ..+++++|.++|++|+..+-.
T Consensus 6 ~vlVtGa-sg~i--G~~~a~~l~~~g~~V~~~~r~ 37 (270)
T PRK06179 6 VALVTGA-SSGI--GRATAEKLARAGYRVFGTSRN 37 (270)
T ss_pred EEEEecC-CCHH--HHHHHHHHHHCCCEEEEEeCC
Confidence 4555554 4544 578899999999999877654
No 295
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=53.74 E-value=38 Score=29.06 Aligned_cols=40 Identities=15% Similarity=0.166 Sum_probs=33.3
Q ss_pred EEEEcC-CCCCChHHHHHHHHHHHhCCCeEEEEeCcccccc
Q 036519 17 CLVLSY-PAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKS 56 (365)
Q Consensus 17 il~~~~-~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~ 56 (365)
|.|++. |+.|-..-.+.||.+|+++|-+|+++=.+.+.+.
T Consensus 4 Itf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl 44 (231)
T PF07015_consen 4 ITFASSKGGAGKTTAAMALASELAARGARVALIDADPNQPL 44 (231)
T ss_pred EEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcH
Confidence 445554 7999999999999999999999999987766543
No 296
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=53.66 E-value=98 Score=29.70 Aligned_cols=85 Identities=20% Similarity=0.259 Sum_probs=52.9
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCccccccccCCCCCCCCeeEEEcCCCCCCCCCCCcCCHHHHHHH
Q 036519 14 LAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLHRDPSSSISIPLETISDGYDEGRSAQAETDQAYVDR 93 (365)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~~~~~~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~ 93 (365)
..++++...+ .-.+.+++.|.+.|.+|..+.+....+..++ + +. .. ....+..
T Consensus 311 gkrvai~~~~-----~~~~~la~~L~elG~~v~~~~~~~~~~~~~~-------~-----~~--~~---i~~~D~~----- 363 (455)
T PRK14476 311 GKRVAIAAEP-----DLLLALGSFLAEMGAEIVAAVTTTKSPALED-------L-----PA--EE---VLIGDLE----- 363 (455)
T ss_pred CCEEEEEeCH-----HHHHHHHHHHHHCCCEEEEEEeCCCcHHHHh-------C-----Cc--Cc---EEeCCHH-----
Confidence 4667766433 4778899999999999988776553333221 1 10 00 0011222
Q ss_pred HHHHhHHHHHHHHHhcCCCcEEEEcCCCccHHHHHHHhCCceEEE
Q 036519 94 FWQIGVQTLTELVERMNDVDCIVYDSFLPWALDVAKKFGLTGAAF 138 (365)
Q Consensus 94 ~~~~~~~~l~~ll~~~~~pD~vv~D~~~~~a~~~A~~~giP~v~~ 138 (365)
.+.+.++ +||++|.+.. ...+|+++|+|++.+
T Consensus 364 -------~le~~~~---~~dliig~s~---~~~~a~~~gip~~~~ 395 (455)
T PRK14476 364 -------DLEELAE---GADLLITNSH---GRQAAERLGIPLLRV 395 (455)
T ss_pred -------HHHHhcc---CCCEEEECch---hHHHHHHcCCCEEEe
Confidence 1222222 7899998854 678999999999864
No 297
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=53.46 E-value=19 Score=33.52 Aligned_cols=41 Identities=29% Similarity=0.310 Sum_probs=34.1
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCccccccc
Q 036519 17 CLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSL 57 (365)
Q Consensus 17 il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v 57 (365)
+++...|+.|--.=++.+|..+.++|..|.|++.+...+.+
T Consensus 85 vLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi 125 (372)
T cd01121 85 ILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQI 125 (372)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHH
Confidence 56667789999999999999999999999999887655444
No 298
>PLN02891 IMP cyclohydrolase
Probab=53.45 E-value=53 Score=31.79 Aligned_cols=100 Identities=14% Similarity=0.164 Sum_probs=60.3
Q ss_pred ccCCCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCccccccccCCCCCCCCeeEEEcCC--CCCCCCCC---C
Q 036519 9 SASSKLAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLHRDPSSSISIPLETISD--GYDEGRSA---Q 83 (365)
Q Consensus 9 ~~~~~~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~~~~~~~~gi~~~~l~~--~~~~~~~~---~ 83 (365)
+.+....+.|+..+-=.| .+.+|+.|.+.|.++ ++|.-..+.+++ .|+++..+.+ ++|+ .++ .
T Consensus 17 ~~~~~~krALISVsDKtg----i~~fAk~L~~~gveI--iSTgGTak~L~e-----~Gi~v~~Vsd~TgfPE-iL~GRVK 84 (547)
T PLN02891 17 SPSSGKKQALISLSDKTD----LALLANGLQELGYTI--VSTGGTASALEA-----AGVSVTKVEELTNFPE-MLDGRVK 84 (547)
T ss_pred CCCccccEEEEEEecccC----HHHHHHHHHHCCCEE--EEcchHHHHHHH-----cCCceeeHHhccCCch-hhCCccc
Confidence 333445667776665544 789999999977664 677777777776 8999999873 6776 332 2
Q ss_pred cCCHHHHHHHHHHHhHHHHHHHHHhcC--CCcEEEEcCC
Q 036519 84 AETDQAYVDRFWQIGVQTLTELVERMN--DVDCIVYDSF 120 (365)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~l~~ll~~~~--~pD~vv~D~~ 120 (365)
+-.+.-.-..+.+.-.+.-.+-+++.. ..|+||++..
T Consensus 85 TLHPkIhgGILa~r~~~~h~~~l~~~~I~~IDlVvVNLY 123 (547)
T PLN02891 85 TLHPAVHGGILARRDQEHHMEALNEHGIGTIDVVVVNLY 123 (547)
T ss_pred ccCchhhhhhhcCCCCHHHHHHHHHcCCCceeeEEEecc
Confidence 222222223333332222223344443 8899998843
No 299
>PRK05595 replicative DNA helicase; Provisional
Probab=53.23 E-value=54 Score=31.34 Aligned_cols=41 Identities=17% Similarity=0.284 Sum_probs=33.3
Q ss_pred EEEEcCCCCCChHHHHHHHHHHH-hCCCeEEEEeCccccccc
Q 036519 17 CLVLSYPAQGHMNPLLQFSKRLE-HNGIKVTLVTTYFISKSL 57 (365)
Q Consensus 17 il~~~~~~~GH~~p~l~la~~L~-~~Gh~Vt~~~~~~~~~~v 57 (365)
+++...|+.|-..=.+.+|..++ ++|+.|.|++.+-..+.+
T Consensus 204 iviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~~~l 245 (444)
T PRK05595 204 ILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKEQL 245 (444)
T ss_pred EEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCHHHH
Confidence 66778899999999999998876 569999999887554443
No 300
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=53.22 E-value=36 Score=29.78 Aligned_cols=95 Identities=15% Similarity=0.075 Sum_probs=53.4
Q ss_pred HHHHHHHHHhCC--CeEEEEeCcccc----ccccCCCCCCCCee-EEEcCCCCCCCCCCCcCCHHHHHHHHHHHhHHHHH
Q 036519 31 LLQFSKRLEHNG--IKVTLVTTYFIS----KSLHRDPSSSISIP-LETISDGYDEGRSAQAETDQAYVDRFWQIGVQTLT 103 (365)
Q Consensus 31 ~l~la~~L~~~G--h~Vt~~~~~~~~----~~v~~~~~~~~gi~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 103 (365)
.++.|-+|++++ .+||.++-..-. +.+++ +..-|.. -+-+.+.- +.. .+.. .+...+.
T Consensus 41 AlE~Alrlke~~~g~~Vtvvs~Gp~~a~~~~~lr~--aLAmGaD~avli~d~~----~~g-~D~~--------~tA~~La 105 (256)
T PRK03359 41 AIEAACQLKQQAAEAQVTALSVGGKALTNAKGRKD--VLSRGPDELIVVIDDQ----FEQ-ALPQ--------QTASALA 105 (256)
T ss_pred HHHHHHHHhhhcCCCEEEEEEECCcchhhHHHHHH--HHHcCCCEEEEEecCc----ccC-cCHH--------HHHHHHH
Confidence 478888898873 799988754322 22332 1112222 22222210 111 1111 1123456
Q ss_pred HHHHhcCCCcEEEEcCCC------ccHHHHHHHhCCceEEEecc
Q 036519 104 ELVERMNDVDCIVYDSFL------PWALDVAKKFGLTGAAFLTQ 141 (365)
Q Consensus 104 ~ll~~~~~pD~vv~D~~~------~~a~~~A~~~giP~v~~~~~ 141 (365)
..+++. .+|+|++-..+ .-+..+|+.+|+|++++...
T Consensus 106 ~ai~~~-~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 106 AAAQKA-GFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred HHHHHh-CCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 666776 79999975332 23789999999999987654
No 301
>PRK11823 DNA repair protein RadA; Provisional
Probab=53.18 E-value=20 Score=34.20 Aligned_cols=42 Identities=29% Similarity=0.276 Sum_probs=35.5
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCccccccc
Q 036519 16 HCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSL 57 (365)
Q Consensus 16 ~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v 57 (365)
-+++...|+.|-..=++.++..+.++|.+|.|+++++..+.+
T Consensus 82 ~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi 123 (446)
T PRK11823 82 VVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQI 123 (446)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHH
Confidence 356777789999999999999999889999999988766554
No 302
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=53.11 E-value=21 Score=31.47 Aligned_cols=54 Identities=15% Similarity=0.376 Sum_probs=37.8
Q ss_pred ccccccccccCChhhHHHHHHc-CCCeeeccccCchhhHHHHHHhHhcceeEecCCCCCcccHHHHHHHHHHHhcCH
Q 036519 257 HEATGCFLTHCGWNSTIEALRL-GVPMLAMPLWTDQSTNSKYVMDVWKMGLKVPADEKGIVRREAIAHCIGEILEGD 332 (365)
Q Consensus 257 ~~~~~~~I~hgG~gs~~eal~~-GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~ 332 (365)
.+|+ +|+=||-||+..++.. ..|++.+-. - .+|. +. +.+++++.+++++++++.
T Consensus 52 ~~D~--vi~lGGDGT~L~a~~~~~~PilGIN~-------------G-~lGF-L~-----~~~~~~~~~~l~~i~~g~ 106 (271)
T PRK01185 52 NADV--IITIGGDGTILRTLQRAKGPILGINM-------------G-GLGF-LT-----EIEIDEVGSAIKKLIRGE 106 (271)
T ss_pred CCCE--EEEEcCcHHHHHHHHHcCCCEEEEEC-------------C-CCcc-Cc-----ccCHHHHHHHHHHHHcCC
Confidence 5677 9999999999999873 556655422 1 1221 11 567889999999998763
No 303
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=52.98 E-value=25 Score=33.76 Aligned_cols=112 Identities=17% Similarity=0.193 Sum_probs=54.0
Q ss_pred CCChHHHHHHHHHHHh--------CCCe----EEEEeC---cc----ccccccCCCCCCCCeeEEEcCC----CCCCCCC
Q 036519 25 QGHMNPLLQFSKRLEH--------NGIK----VTLVTT---YF----ISKSLHRDPSSSISIPLETISD----GYDEGRS 81 (365)
Q Consensus 25 ~GH~~p~l~la~~L~~--------~Gh~----Vt~~~~---~~----~~~~v~~~~~~~~gi~~~~l~~----~~~~~~~ 81 (365)
.|.+-=.+.+|++|.+ +|.+ |.++|- +. ....+++ ..+..+...+-+|- ++-+ .+
T Consensus 296 GGQVvYVleqarALe~e~~~ri~~~gl~i~p~i~i~TRlIpd~~~t~~~q~le~-~~gt~~a~IlRvPF~~~~gi~~-kw 373 (550)
T PF00862_consen 296 GGQVVYVLEQARALENEMLYRIKLQGLDITPKIDIVTRLIPDAKGTTCNQRLEK-VSGTENARILRVPFGPEKGILR-KW 373 (550)
T ss_dssp SHHHHHHHHHHHHHHHHTHHHHHHTT-----EEEEEEE--TBTTCGGGTSSEEE-ETTESSEEEEEE-ESESTEEE--S-
T ss_pred CCcEEEEeHHHHHHHHHHHHHHHhcCCCCCCceeeecccccCCcCCCccccccc-cCCCCCcEEEEecCCCCcchhh-hc
Confidence 4566678889988864 3543 544441 11 1112221 11223444555551 1111 22
Q ss_pred CCcCCHHHHHHHHHHHhHHHHHHHHHhcC-CCcEEEEcCCC--ccHHHHHHHhCCceEEEecc
Q 036519 82 AQAETDQAYVDRFWQIGVQTLTELVERMN-DVDCIVYDSFL--PWALDVAKKFGLTGAAFLTQ 141 (365)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~~ll~~~~-~pD~vv~D~~~--~~a~~~A~~~giP~v~~~~~ 141 (365)
-...++..+++.+.... ...+++++. +||+|+..+.- ..|.++++++|||......+
T Consensus 374 isrf~lWPyLe~fa~d~---~~~i~~e~~~~PdlI~GnYsDgnlvA~LLs~~lgv~~~~iaHs 433 (550)
T PF00862_consen 374 ISRFDLWPYLEEFADDA---EREILAELQGKPDLIIGNYSDGNLVASLLSRKLGVTQCFIAHS 433 (550)
T ss_dssp --GGG-GGGHHHHHHHH---HHHHHHHHTS--SEEEEEHHHHHHHHHHHHHHHT-EEEEE-SS
T ss_pred cchhhchhhHHHHHHHH---HHHHHHHhCCCCcEEEeccCcchHHHHHHHhhcCCceehhhhc
Confidence 22334445555554443 344555544 99999976433 34889999999999876554
No 304
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=52.98 E-value=64 Score=31.26 Aligned_cols=34 Identities=26% Similarity=0.456 Sum_probs=26.6
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEeCccc
Q 036519 15 AHCLVLSYPAQGHMNPLLQFSKRLEHN--GIKVTLVTTYFI 53 (365)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~la~~L~~~--Gh~Vt~~~~~~~ 53 (365)
||||++..++..| +|+..|++. |++|..+-.+.+
T Consensus 1 mkVLviG~Ggreh-----al~~~l~~s~~g~~v~~~~g~~N 36 (486)
T PRK05784 1 MKVLLVGDGAREH-----ALAEALEKSTKGYKVYALSSYLN 36 (486)
T ss_pred CEEEEECCchhHH-----HHHHHHHhCCCCCEEEEEECCCC
Confidence 7999999988887 478888776 899988855333
No 305
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=52.91 E-value=84 Score=28.65 Aligned_cols=108 Identities=14% Similarity=0.071 Sum_probs=69.7
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEeCccccccccCCCCCCCCeeEEEcCCCCCCCCCCCcCCHHHHH
Q 036519 14 LAHCLVLSYPAQGHMNPLLQFSKRLEHN--GIKVTLVTTYFISKSLHRDPSSSISIPLETISDGYDEGRSAQAETDQAYV 91 (365)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~la~~L~~~--Gh~Vt~~~~~~~~~~v~~~~~~~~gi~~~~l~~~~~~~~~~~~~~~~~~~ 91 (365)
+|+|+++-....|++.=.+++-..|+++ +.++++++.+.+.+.++. . +.++-+..-+. ...+
T Consensus 1 ~~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~i~~~--~--p~I~~vi~~~~------~~~~------ 64 (334)
T COG0859 1 MMKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAPILKL--N--PEIDKVIIIDK------KKKG------ 64 (334)
T ss_pred CceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccchHHHHhc--C--hHhhhhccccc------cccc------
Confidence 6899999999999999999999999997 489999999998888774 1 22322211110 0111
Q ss_pred HHHHHHhHHHHHHHHHhcCCCcEEEEcCCCccHHHHHHHhCCceEEEec
Q 036519 92 DRFWQIGVQTLTELVERMNDVDCIVYDSFLPWALDVAKKFGLTGAAFLT 140 (365)
Q Consensus 92 ~~~~~~~~~~l~~ll~~~~~pD~vv~D~~~~~a~~~A~~~giP~v~~~~ 140 (365)
..+... ..+...+++. +.|+||.=.-.+-...++...++|.-.-+-
T Consensus 65 ~~~~~~--~~l~~~lr~~-~yD~vidl~~~~ksa~l~~~~~~~~r~g~~ 110 (334)
T COG0859 65 LGLKER--LALLRTLRKE-RYDAVIDLQGLLKSALLALLLGIPFRIGFD 110 (334)
T ss_pred cchHHH--HHHHHHhhcc-CCCEEEECcccHHHHHHHHHhCCCcccccc
Confidence 011111 1233344443 689888554445577777788888765433
No 306
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=52.90 E-value=8.2 Score=30.84 Aligned_cols=32 Identities=25% Similarity=0.187 Sum_probs=25.4
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCcc
Q 036519 16 HCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYF 52 (365)
Q Consensus 16 ~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~ 52 (365)
||.++..|..|+ ++|..|.++||+|++.+.+.
T Consensus 1 KI~ViGaG~~G~-----AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGT-----ALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHH-----HHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHH-----HHHHHHHHcCCEEEEEeccH
Confidence 466666666664 78999999999999998874
No 307
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=52.64 E-value=20 Score=29.17 Aligned_cols=41 Identities=24% Similarity=0.097 Sum_probs=34.6
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCccccccc
Q 036519 17 CLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSL 57 (365)
Q Consensus 17 il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v 57 (365)
+++...|+.|-..=.+.++.+..++|..|.|++++...+.+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~ 42 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEEL 42 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHH
Confidence 56777889999999999999999999999999987665544
No 308
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=52.57 E-value=1.6e+02 Score=25.82 Aligned_cols=98 Identities=14% Similarity=0.055 Sum_probs=51.9
Q ss_pred HHHHHHHHHhC---CCeEEEEeCccccccccCCCCCCCCeeEEEcCCCCCCCCCCCcCCHHHHHHHHHHHhHHHHHHHHH
Q 036519 31 LLQFSKRLEHN---GIKVTLVTTYFISKSLHRDPSSSISIPLETISDGYDEGRSAQAETDQAYVDRFWQIGVQTLTELVE 107 (365)
Q Consensus 31 ~l~la~~L~~~---Gh~Vt~~~~~~~~~~v~~~~~~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~ 107 (365)
+.+|++.|.+. |++|+++.+...+.-....-.....+.+..+.++ .+.-.+++..-... .+..++.
T Consensus 16 l~aL~~~l~~~~~~~~~V~VVAP~~eqSg~ghaiT~~~pl~~~~~~~~----~yav~GTPaDCV~l-------al~~~~~ 84 (261)
T PRK13931 16 LEVLEQIATELAGPDGEVWTVAPAFEQSGVGHCISYTHPMMIAELGPR----RFAAEGSPADCVLA-------ALYDVMK 84 (261)
T ss_pred HHHHHHHHHHhccCCCeEEEEeCCCCCCCCcccccCCCCeEEEEeCCC----eEEEcCchHHHHHH-------HHHHhcC
Confidence 44567777663 4799988877665544431111233555554321 12222333332222 2233343
Q ss_pred hcCCCcEEEEc----------CCCc---cHHHHHHHhCCceEEEec
Q 036519 108 RMNDVDCIVYD----------SFLP---WALDVAKKFGLTGAAFLT 140 (365)
Q Consensus 108 ~~~~pD~vv~D----------~~~~---~a~~~A~~~giP~v~~~~ 140 (365)
.- +||+||+- .+.. .|.+-|..+|||.+.++.
T Consensus 85 ~~-~pDlVvSGIN~G~N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~ 129 (261)
T PRK13931 85 DA-PPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIALSQ 129 (261)
T ss_pred CC-CCCEEEECCccCCCCCcCcccchhHHHHHHHHhcCCCeEEEEe
Confidence 22 89999974 2222 255666678999999875
No 309
>PRK08506 replicative DNA helicase; Provisional
Probab=52.43 E-value=70 Score=30.87 Aligned_cols=42 Identities=12% Similarity=0.192 Sum_probs=34.9
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCccccccc
Q 036519 16 HCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSL 57 (365)
Q Consensus 16 ~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v 57 (365)
=+++...|+.|-..=.+.+|....++|+.|.|++.+-....+
T Consensus 194 LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~~ql 235 (472)
T PRK08506 194 LIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPAEQL 235 (472)
T ss_pred eEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCHHHH
Confidence 367788899999999999999988889999999887554443
No 310
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=52.13 E-value=1.3e+02 Score=24.56 Aligned_cols=95 Identities=13% Similarity=0.183 Sum_probs=57.8
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEE---eCc--ccc-ccccCCCCCCCCeeEEEcCCCCCCCCCCCcCCHHH
Q 036519 16 HCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLV---TTY--FIS-KSLHRDPSSSISIPLETISDGYDEGRSAQAETDQA 89 (365)
Q Consensus 16 ~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~---~~~--~~~-~~v~~~~~~~~gi~~~~l~~~~~~~~~~~~~~~~~ 89 (365)
-|.+++..+.|-..-.+.+|-+...+|++|.++ -+. ... ..+++ .++.|.....++.- .. .+...
T Consensus 7 li~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~-----~~~~~~~~g~g~~~-~~---~~~~~ 77 (173)
T TIGR00708 7 IIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEP-----HGVEFQVMGTGFTW-ET---QNREA 77 (173)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHh-----cCcEEEECCCCCee-cC---CCcHH
Confidence 478888899999999999999999999999654 332 111 22332 36788777665432 11 11122
Q ss_pred HHHHHHHHhHHHHHHHHHhcCCCcEEEEcCCC
Q 036519 90 YVDRFWQIGVQTLTELVERMNDVDCIVYDSFL 121 (365)
Q Consensus 90 ~~~~~~~~~~~~l~~ll~~~~~pD~vv~D~~~ 121 (365)
.... .........+.+.+- +.|+||.|-..
T Consensus 78 ~~~~-~~~~~~~a~~~l~~~-~~DlvVLDEi~ 107 (173)
T TIGR00708 78 DTAI-AKAAWQHAKEMLADP-ELDLVLLDELT 107 (173)
T ss_pred HHHH-HHHHHHHHHHHHhcC-CCCEEEehhhH
Confidence 2122 222222334444444 88999999654
No 311
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=51.91 E-value=66 Score=28.68 Aligned_cols=89 Identities=13% Similarity=0.207 Sum_probs=51.8
Q ss_pred hccCCCCcEEEEEcCCCCCChHHHHHHHHHHHh--CCCeEEEEeCc-c-ccccccCCCCCCCCeeEEEcCCCCCCCCCCC
Q 036519 8 ASASSKLAHCLVLSYPAQGHMNPLLQFSKRLEH--NGIKVTLVTTY-F-ISKSLHRDPSSSISIPLETISDGYDEGRSAQ 83 (365)
Q Consensus 8 ~~~~~~~~~il~~~~~~~GH~~p~l~la~~L~~--~Gh~Vt~~~~~-~-~~~~v~~~~~~~~gi~~~~l~~~~~~~~~~~ 83 (365)
.....+++||+++.++....+. +|.+...+ -+++|..+.+. . ....+++ .|+++..++.....
T Consensus 83 l~~~~~~~ri~vl~Sg~gsnl~---al~~~~~~~~~~~~i~~visn~~~~~~lA~~-----~gIp~~~~~~~~~~----- 149 (286)
T PRK06027 83 LLDSAERKRVVILVSKEDHCLG---DLLWRWRSGELPVEIAAVISNHDDLRSLVER-----FGIPFHHVPVTKET----- 149 (286)
T ss_pred EcccccCcEEEEEEcCCCCCHH---HHHHHHHcCCCCcEEEEEEEcChhHHHHHHH-----hCCCEEEeccCccc-----
Confidence 3445678999999998844443 33334433 26888866543 2 2333444 68888777531000
Q ss_pred cCCHHHHHHHHHHHhHHHHHHHHHhcCCCcEEEEcCCC
Q 036519 84 AETDQAYVDRFWQIGVQTLTELVERMNDVDCIVYDSFL 121 (365)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~pD~vv~D~~~ 121 (365)
.......+.+++++. +||+||.-.+.
T Consensus 150 -----------~~~~~~~~~~~l~~~-~~Dlivlagy~ 175 (286)
T PRK06027 150 -----------KAEAEARLLELIDEY-QPDLVVLARYM 175 (286)
T ss_pred -----------cchhHHHHHHHHHHh-CCCEEEEecch
Confidence 111123456667777 99999976443
No 312
>COG4081 Uncharacterized protein conserved in archaea [Function unknown]
Probab=51.86 E-value=31 Score=26.37 Aligned_cols=37 Identities=22% Similarity=0.266 Sum_probs=30.9
Q ss_pred CCCCCChHHHHHHHHHHHhCCCeEEEEeCcccccccc
Q 036519 22 YPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLH 58 (365)
Q Consensus 22 ~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~ 58 (365)
.-..-.+.-.+-+...|.++|++|++.+++...+.++
T Consensus 12 PeiP~qissaiYls~klkkkgf~v~VaateAa~kLle 48 (148)
T COG4081 12 PEIPPQISSAIYLSHKLKKKGFDVTVAATEAALKLLE 48 (148)
T ss_pred CCCCccchHHHHHHHHhhccCccEEEecCHhhheeee
Confidence 3455677778889999999999999999998877766
No 313
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=51.86 E-value=14 Score=34.65 Aligned_cols=44 Identities=14% Similarity=0.104 Sum_probs=36.3
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCcccccccc
Q 036519 14 LAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLH 58 (365)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~ 58 (365)
.+||++...|+.|= .-.+.+.+.|.+.|++|.++.++...+++.
T Consensus 3 ~k~IllgiTGSiaa-~~~~~ll~~L~~~g~~V~vv~T~~A~~fv~ 46 (390)
T TIGR00521 3 NKKILLGVTGGIAA-YKTVELVRELVRQGAEVKVIMTEAAKKFIT 46 (390)
T ss_pred CCEEEEEEeCHHHH-HHHHHHHHHHHhCCCEEEEEECHhHHHHHH
Confidence 46788877776655 558999999999999999999998877765
No 314
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=51.76 E-value=97 Score=29.46 Aligned_cols=43 Identities=19% Similarity=0.220 Sum_probs=35.8
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHH-hCCCeEEEEeCcccccc
Q 036519 14 LAHCLVLSYPAQGHMNPLLQFSKRLE-HNGIKVTLVTTYFISKS 56 (365)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~la~~L~-~~Gh~Vt~~~~~~~~~~ 56 (365)
+.-|+|+..++.|-..=...||..|. ++|.+|.+++.+.+...
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~ 142 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPA 142 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchH
Confidence 44567777789999999999999997 58999999998876543
No 315
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=51.59 E-value=30 Score=27.99 Aligned_cols=37 Identities=24% Similarity=0.283 Sum_probs=26.9
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEe
Q 036519 12 SKLAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVT 49 (365)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~ 49 (365)
.+..+|++++.++- .=-=.+.+|+.|.++|++|+++.
T Consensus 23 ~~~~~v~il~G~Gn-NGgDgl~~AR~L~~~G~~V~v~~ 59 (169)
T PF03853_consen 23 PKGPRVLILCGPGN-NGGDGLVAARHLANRGYNVTVYL 59 (169)
T ss_dssp CTT-EEEEEE-SSH-HHHHHHHHHHHHHHTTCEEEEEE
T ss_pred cCCCeEEEEECCCC-ChHHHHHHHHHHHHCCCeEEEEE
Confidence 56778999998852 22236889999999999999843
No 316
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=51.35 E-value=30 Score=30.91 Aligned_cols=36 Identities=19% Similarity=0.136 Sum_probs=32.8
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 036519 15 AHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTT 50 (365)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~ 50 (365)
|||.+.-=|+-|-..-.+.||..|+++|++|.++-.
T Consensus 1 m~ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~ 36 (290)
T CHL00072 1 MKLAVYGKGGIGKSTTSCNISIALARRGKKVLQIGC 36 (290)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEec
Confidence 678888889999999999999999999999998744
No 317
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=51.31 E-value=12 Score=33.34 Aligned_cols=39 Identities=28% Similarity=0.245 Sum_probs=28.9
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeC-cccccccc
Q 036519 15 AHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTT-YFISKSLH 58 (365)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~-~~~~~~v~ 58 (365)
|||.++-.|..| ..+|..|.+.||+|+++.. ++..+.+.
T Consensus 1 m~I~IiG~G~~G-----~~~a~~L~~~g~~V~~~~r~~~~~~~~~ 40 (304)
T PRK06522 1 MKIAILGAGAIG-----GLFGAALAQAGHDVTLVARRGAHLDALN 40 (304)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCeEEEEECChHHHHHHH
Confidence 678888777666 5678889999999999986 44444444
No 318
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=51.31 E-value=23 Score=34.11 Aligned_cols=54 Identities=19% Similarity=0.350 Sum_probs=39.9
Q ss_pred cccccccccccCChhhHHHHHHc----CCCeeeccccCchhhHHHHHHhHhc-ceeEecCCCCCcccHHHHHHHHHHHhc
Q 036519 256 AHEATGCFLTHCGWNSTIEALRL----GVPMLAMPLWTDQSTNSKYVMDVWK-MGLKVPADEKGIVRREAIAHCIGEILE 330 (365)
Q Consensus 256 ~~~~~~~~I~hgG~gs~~eal~~----GvP~v~~P~~~DQ~~nA~~v~~~~G-~G~~~~~~~~~~~~~~~l~~~i~~ll~ 330 (365)
..+|+ +|+=||-||+..+... ++|++.+- . | +|. +. +++++++.++|.++++
T Consensus 261 ~~~Dl--VIsiGGDGTlL~Aar~~~~~~iPILGIN--------------~-G~LGF-Lt-----~i~~~e~~~~Le~il~ 317 (508)
T PLN02935 261 TKVDL--VITLGGDGTVLWAASMFKGPVPPVVPFS--------------M-GSLGF-MT-----PFHSEQYRDCLDAILK 317 (508)
T ss_pred cCCCE--EEEECCcHHHHHHHHHhccCCCcEEEEe--------------C-CCcce-ec-----ccCHHHHHHHHHHHHc
Confidence 45777 9999999999999774 46766552 2 2 343 33 5788999999999997
Q ss_pred CH
Q 036519 331 GD 332 (365)
Q Consensus 331 ~~ 332 (365)
++
T Consensus 318 G~ 319 (508)
T PLN02935 318 GP 319 (508)
T ss_pred CC
Confidence 64
No 319
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=51.08 E-value=17 Score=32.08 Aligned_cols=57 Identities=11% Similarity=0.133 Sum_probs=38.3
Q ss_pred hhhhcccccccccccCChhhHHHHHH----cCCCeeeccccCchhhHHHHHHhHhcceeEecCCCCCcccHHHHHHHHHH
Q 036519 252 LGVLAHEATGCFLTHCGWNSTIEALR----LGVPMLAMPLWTDQSTNSKYVMDVWKMGLKVPADEKGIVRREAIAHCIGE 327 (365)
Q Consensus 252 ~~~L~~~~~~~~I~hgG~gs~~eal~----~GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ 327 (365)
..+...+|+ +|+=||-||+..+++ .++|++.+-.. .+|.- . +.+++++.+.+.+
T Consensus 37 ~~~~~~~d~--vi~iGGDGT~L~aa~~~~~~~~PilgIn~G--------------~lGFL-~-----~~~~~~~~~~l~~ 94 (272)
T PRK02231 37 EEIGQRAQL--AIVIGGDGNMLGRARVLAKYDIPLIGINRG--------------NLGFL-T-----DIDPKNAYEQLEA 94 (272)
T ss_pred HHhCcCCCE--EEEECCcHHHHHHHHHhccCCCcEEEEeCC--------------CCccc-c-----cCCHHHHHHHHHH
Confidence 344456788 999999999998765 36787766421 12322 2 3567777788887
Q ss_pred Hhc
Q 036519 328 ILE 330 (365)
Q Consensus 328 ll~ 330 (365)
+++
T Consensus 95 ~~~ 97 (272)
T PRK02231 95 CLE 97 (272)
T ss_pred HHh
Confidence 776
No 320
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=50.89 E-value=15 Score=29.95 Aligned_cols=41 Identities=10% Similarity=0.037 Sum_probs=30.7
Q ss_pred EEEEcCCCCCChHH-HHHHHHHHHh-CCCeEEEEeCcccccccc
Q 036519 17 CLVLSYPAQGHMNP-LLQFSKRLEH-NGIKVTLVTTYFISKSLH 58 (365)
Q Consensus 17 il~~~~~~~GH~~p-~l~la~~L~~-~Gh~Vt~~~~~~~~~~v~ 58 (365)
|+..-.++ ||... .+.+.+.|.+ +||+|.++.++...+.++
T Consensus 2 i~~gitGs-g~~l~e~v~~l~~L~~~~g~eV~vv~S~~A~~vi~ 44 (174)
T TIGR02699 2 IAWGITGS-GDKLPETYSIMKDVKNRYGDEIDVFLSKAGEQVVK 44 (174)
T ss_pred EEEEEEcc-HHHHHHHHHHHHHHHHhcCCEEEEEECHhHHHHHH
Confidence 44444444 78866 8899999985 599999999988876555
No 321
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=50.89 E-value=36 Score=34.89 Aligned_cols=103 Identities=17% Similarity=0.088 Sum_probs=62.1
Q ss_pred EEeecchh---hhhccccccccccc---CCh-hhHHHHHHcCCC---eeeccccCchhhHHHHHHhHhcceeEecCCCCC
Q 036519 245 VVNWCPQL---GVLAHEATGCFLTH---CGW-NSTIEALRLGVP---MLAMPLWTDQSTNSKYVMDVWKMGLKVPADEKG 314 (365)
Q Consensus 245 ~~~~~p~~---~~L~~~~~~~~I~h---gG~-gs~~eal~~GvP---~v~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~ 314 (365)
+.+++++. .++..+|+ ++.- -|+ .+..|++++|+| .+++.-. +--..++ .-|+.+++
T Consensus 346 ~~~~~~~~~l~~ly~~aDv--~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~------~G~~~~l-~~~llv~P---- 412 (726)
T PRK14501 346 FYRSLPFEELVALYRAADV--ALVTPLRDGMNLVAKEYVASRTDGDGVLILSEM------AGAAAEL-AEALLVNP---- 412 (726)
T ss_pred EeCCCCHHHHHHHHHhccE--EEecccccccCcccceEEEEcCCCCceEEEecc------cchhHHh-CcCeEECC----
Confidence 33566665 48889998 7654 354 577899999775 2233211 1112233 33777774
Q ss_pred cccHHHHHHHHHHHhcCH--HHHHHHHHHHH--cCCCcHHHHHHHHHHHHh
Q 036519 315 IVRREAIAHCIGEILEGD--KWRNFAKEAVA--KGGSSDKNIDDFVANLIS 361 (365)
Q Consensus 315 ~~~~~~l~~~i~~ll~~~--~~~~~a~~~~~--~~g~s~~~~~~~~~~i~~ 361 (365)
.++++++++|.++++++ +.+++.+++.+ ..-+...-++.+++.+.+
T Consensus 413 -~d~~~la~ai~~~l~~~~~e~~~r~~~~~~~v~~~~~~~w~~~~l~~l~~ 462 (726)
T PRK14501 413 -NDIEGIAAAIKRALEMPEEEQRERMQAMQERLRRYDVHKWASDFLDELRE 462 (726)
T ss_pred -CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 47999999999999753 33333332211 235566777777776664
No 322
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=50.77 E-value=32 Score=33.82 Aligned_cols=38 Identities=24% Similarity=0.370 Sum_probs=27.6
Q ss_pred CcEEEEEcCC-------CCCChHHHHH---HHHHHHhCCCeEEEEeCc
Q 036519 14 LAHCLVLSYP-------AQGHMNPLLQ---FSKRLEHNGIKVTLVTTY 51 (365)
Q Consensus 14 ~~~il~~~~~-------~~GH~~p~l~---la~~L~~~Gh~Vt~~~~~ 51 (365)
++++++.+.. ..||+.+.|+ +|+-++.+|++|.|+|..
T Consensus 4 ~~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGt 51 (558)
T COG0143 4 MKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGT 51 (558)
T ss_pred CCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 3456665543 5699997775 577777799999998764
No 323
>PRK12342 hypothetical protein; Provisional
Probab=50.44 E-value=43 Score=29.27 Aligned_cols=95 Identities=13% Similarity=0.105 Sum_probs=52.7
Q ss_pred HHHHHHHHHhCCCeEEEEeCcccc--cc-c-cCCCCCCCCe-eEEEcCCCCCCCCCCCcCCHHHHHHHHHHHhHHHHHHH
Q 036519 31 LLQFSKRLEHNGIKVTLVTTYFIS--KS-L-HRDPSSSISI-PLETISDGYDEGRSAQAETDQAYVDRFWQIGVQTLTEL 105 (365)
Q Consensus 31 ~l~la~~L~~~Gh~Vt~~~~~~~~--~~-v-~~~~~~~~gi-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 105 (365)
.++-|-+|++.|.+|+.++-..-. .. + .+ +..-|. +.+-+.+.- +.. .+.. .+...+...
T Consensus 40 AlE~AlrLk~~g~~Vtvls~Gp~~a~~~~l~r~--alamGaD~avli~d~~----~~g-~D~~--------ata~~La~~ 104 (254)
T PRK12342 40 AIEAASQLATDGDEIAALTVGGSLLQNSKVRKD--VLSRGPHSLYLVQDAQ----LEH-ALPL--------DTAKALAAA 104 (254)
T ss_pred HHHHHHHHhhcCCEEEEEEeCCChHhHHHHHHH--HHHcCCCEEEEEecCc----cCC-CCHH--------HHHHHHHHH
Confidence 477788888778999988754322 22 2 21 111121 112222211 111 1211 112345566
Q ss_pred HHhcCCCcEEEEcCCCc------cHHHHHHHhCCceEEEecc
Q 036519 106 VERMNDVDCIVYDSFLP------WALDVAKKFGLTGAAFLTQ 141 (365)
Q Consensus 106 l~~~~~pD~vv~D~~~~------~a~~~A~~~giP~v~~~~~ 141 (365)
+++. .+|+|++-..+. -+..+|+.+|+|++++...
T Consensus 105 i~~~-~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~~ 145 (254)
T PRK12342 105 IEKI-GFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVSK 145 (254)
T ss_pred HHHh-CCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEEE
Confidence 6666 799999753322 2789999999999986554
No 324
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=50.30 E-value=30 Score=25.96 Aligned_cols=35 Identities=17% Similarity=0.008 Sum_probs=31.5
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCc
Q 036519 17 CLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTY 51 (365)
Q Consensus 17 il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~ 51 (365)
++..+.++-.|-.....++..|+++|++|.+....
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~~ 36 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGVD 36 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCCC
Confidence 67888899999999999999999999999998653
No 325
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=50.19 E-value=31 Score=31.23 Aligned_cols=41 Identities=22% Similarity=0.236 Sum_probs=32.0
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCc-cccccccC
Q 036519 14 LAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTY-FISKSLHR 59 (365)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~-~~~~~v~~ 59 (365)
+|+|.++-.|+.| -+||..|.+.||+|++.+.. +....+..
T Consensus 1 ~~kI~ViGaGswG-----TALA~~la~ng~~V~lw~r~~~~~~~i~~ 42 (329)
T COG0240 1 MMKIAVIGAGSWG-----TALAKVLARNGHEVRLWGRDEEIVAEINE 42 (329)
T ss_pred CceEEEEcCChHH-----HHHHHHHHhcCCeeEEEecCHHHHHHHHh
Confidence 5789999999888 57999999999999977654 44455543
No 326
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=50.05 E-value=14 Score=33.80 Aligned_cols=40 Identities=30% Similarity=0.343 Sum_probs=30.2
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCcccccccc
Q 036519 14 LAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLH 58 (365)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~ 58 (365)
+|||.|+..|..| ..+|..|.++||+|+++......+.+.
T Consensus 2 ~mkI~IiG~G~mG-----~~~A~~L~~~G~~V~~~~r~~~~~~~~ 41 (341)
T PRK08229 2 MARICVLGAGSIG-----CYLGGRLAAAGADVTLIGRARIGDELR 41 (341)
T ss_pred CceEEEECCCHHH-----HHHHHHHHhcCCcEEEEecHHHHHHHH
Confidence 4789999887776 457888999999999988654334443
No 327
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=49.89 E-value=41 Score=23.74 Aligned_cols=56 Identities=13% Similarity=0.167 Sum_probs=36.6
Q ss_pred cEEEEEcCCCC--CChHHHHHHHHHHHhCCCeEEEEeCc-cccccccCCCCCCCCeeEEEc
Q 036519 15 AHCLVLSYPAQ--GHMNPLLQFSKRLEHNGIKVTLVTTY-FISKSLHRDPSSSISIPLETI 72 (365)
Q Consensus 15 ~~il~~~~~~~--GH~~p~l~la~~L~~~Gh~Vt~~~~~-~~~~~v~~~~~~~~gi~~~~l 72 (365)
-+|+++|.... .+..-.+.++..|++.|.+|.+-... .....+.. +...|++|.-+
T Consensus 2 ~qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~~~~~l~k~i~~--a~~~g~~~~ii 60 (94)
T cd00861 2 FDVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDDRNERPGVKFAD--ADLIGIPYRIV 60 (94)
T ss_pred eEEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEECCCCCcccchhH--HHhcCCCEEEE
Confidence 46778886643 45667899999999999999875433 33333432 22356776655
No 328
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=49.74 E-value=22 Score=32.70 Aligned_cols=41 Identities=20% Similarity=0.104 Sum_probs=28.4
Q ss_pred HHHHHHHHHhcCCCcEEE--EcCCC-ccHHHHHHHhCCceEEEec
Q 036519 99 VQTLTELVERMNDVDCIV--YDSFL-PWALDVAKKFGLTGAAFLT 140 (365)
Q Consensus 99 ~~~l~~ll~~~~~pD~vv--~D~~~-~~a~~~A~~~giP~v~~~~ 140 (365)
...+.+++.+. +||+|| .|.+. ..+..+|..++||++-+.-
T Consensus 56 ~~~~~~~~~~~-~Pd~Vlv~GD~~~~la~alaA~~~~ipv~Hiea 99 (346)
T PF02350_consen 56 IIELADVLERE-KPDAVLVLGDRNEALAAALAAFYLNIPVAHIEA 99 (346)
T ss_dssp HHHHHHHHHHH-T-SEEEEETTSHHHHHHHHHHHHTT-EEEEES-
T ss_pred HHHHHHHHHhc-CCCEEEEEcCCchHHHHHHHHHHhCCCEEEecC
Confidence 33578888888 999998 46544 3468999999999776543
No 329
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=49.66 E-value=27 Score=30.58 Aligned_cols=54 Identities=13% Similarity=0.265 Sum_probs=37.3
Q ss_pred cccccccccccCChhhHHHHHH-cCCCeeeccccCchhhHHHHHHhHhcceeEecCCCCCcccHHHHHHHHHHHhcC
Q 036519 256 AHEATGCFLTHCGWNSTIEALR-LGVPMLAMPLWTDQSTNSKYVMDVWKMGLKVPADEKGIVRREAIAHCIGEILEG 331 (365)
Q Consensus 256 ~~~~~~~~I~hgG~gs~~eal~-~GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~ 331 (365)
..+|+ +|+=||-||+..++. +++|++.+-.. .+|.- . ..+++++.+.+.+++++
T Consensus 40 ~~~d~--vi~iGGDGT~L~a~~~~~~Pilgin~G--------------~lGfl-~-----~~~~~~~~~~l~~~~~g 94 (256)
T PRK14075 40 VTADL--IIVVGGDGTVLKAAKKVGTPLVGFKAG--------------RLGFL-S-----SYTLEEIDRFLEDLKNW 94 (256)
T ss_pred CCCCE--EEEECCcHHHHHHHHHcCCCEEEEeCC--------------CCccc-c-----ccCHHHHHHHHHHHHcC
Confidence 35677 999999999999987 57776665321 11211 1 46678888888888765
No 330
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=49.57 E-value=25 Score=30.10 Aligned_cols=43 Identities=28% Similarity=0.141 Sum_probs=35.0
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCcccccc
Q 036519 14 LAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKS 56 (365)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~ 56 (365)
..-+++...|+.|-..=...++....++|..|.|++.+...+.
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~ 67 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKS 67 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHH
Confidence 3446777889999999999998887788999999998765443
No 331
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=49.51 E-value=25 Score=30.86 Aligned_cols=56 Identities=11% Similarity=0.128 Sum_probs=37.8
Q ss_pred cccccccccccCChhhHHHHHHc-----CCCeeeccccCchhhHHHHHHhHhcceeEecCCCCCcccHHHHHHHHHHHhc
Q 036519 256 AHEATGCFLTHCGWNSTIEALRL-----GVPMLAMPLWTDQSTNSKYVMDVWKMGLKVPADEKGIVRREAIAHCIGEILE 330 (365)
Q Consensus 256 ~~~~~~~~I~hgG~gs~~eal~~-----GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~ 330 (365)
..+|+ +|+=||-||+..++.. .+|++.+-.. - .+|. +. +.+++++.+++.++++
T Consensus 38 ~~~D~--vi~lGGDGT~L~a~~~~~~~~~~pilgIn~~------------G-~lGF-L~-----~~~~~~~~~~l~~i~~ 96 (264)
T PRK03501 38 KNANI--IVSIGGDGTFLQAVRKTGFREDCLYAGISTK------------D-QLGF-YC-----DFHIDDLDKMIQAITK 96 (264)
T ss_pred CCccE--EEEECCcHHHHHHHHHhcccCCCeEEeEecC------------C-CCeE-cc-----cCCHHHHHHHHHHHHc
Confidence 34677 9999999999999874 4565444320 0 1221 22 5678889999988887
Q ss_pred CH
Q 036519 331 GD 332 (365)
Q Consensus 331 ~~ 332 (365)
++
T Consensus 97 g~ 98 (264)
T PRK03501 97 EE 98 (264)
T ss_pred CC
Confidence 63
No 332
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=49.31 E-value=37 Score=26.27 Aligned_cols=56 Identities=14% Similarity=0.175 Sum_probs=43.3
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCc----cccccccCCCCCCCCeeEEEcC
Q 036519 13 KLAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTY----FISKSLHRDPSSSISIPLETIS 73 (365)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~----~~~~~v~~~~~~~~gi~~~~l~ 73 (365)
++.||++...+..+|-..-=-++..|+..|++|...+.. .+.+.+.+ .+..++-++
T Consensus 1 ~~~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e-----~~adii~iS 60 (132)
T TIGR00640 1 RRPRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAVE-----ADVHVVGVS 60 (132)
T ss_pred CCCEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHH-----cCCCEEEEc
Confidence 467899999999999999988899999999999987653 33344443 566666664
No 333
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=49.03 E-value=28 Score=31.20 Aligned_cols=55 Identities=22% Similarity=0.333 Sum_probs=39.9
Q ss_pred cccccccccccCChhhHHHHHHc----CCCeeeccccCchhhHHHHHHhHhcceeEecCCCCCcccHHHHHHHHHHHhcC
Q 036519 256 AHEATGCFLTHCGWNSTIEALRL----GVPMLAMPLWTDQSTNSKYVMDVWKMGLKVPADEKGIVRREAIAHCIGEILEG 331 (365)
Q Consensus 256 ~~~~~~~~I~hgG~gs~~eal~~----GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~ 331 (365)
..+++ +|+=||-||+.+++.. ++|++.+... .+| .+. +.+++++.++|.+++++
T Consensus 61 ~~~d~--vi~~GGDGt~l~~~~~~~~~~~Pvlgin~G--------------~lG-Fl~-----~~~~~~~~~~l~~~~~g 118 (295)
T PRK01231 61 EVCDL--VIVVGGDGSLLGAARALARHNVPVLGINRG--------------RLG-FLT-----DIRPDELEFKLAEVLDG 118 (295)
T ss_pred cCCCE--EEEEeCcHHHHHHHHHhcCCCCCEEEEeCC--------------ccc-ccc-----cCCHHHHHHHHHHHHcC
Confidence 35677 9999999999999753 6687776541 223 222 56789999999999865
Q ss_pred H
Q 036519 332 D 332 (365)
Q Consensus 332 ~ 332 (365)
+
T Consensus 119 ~ 119 (295)
T PRK01231 119 H 119 (295)
T ss_pred C
Confidence 3
No 334
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=48.75 E-value=18 Score=29.06 Aligned_cols=31 Identities=16% Similarity=0.277 Sum_probs=23.7
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEe
Q 036519 14 LAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVT 49 (365)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~ 49 (365)
||+|.|+-.+..| .++|+.|.++||+|+.+-
T Consensus 1 m~~Ig~IGlG~mG-----~~~a~~L~~~g~~v~~~d 31 (163)
T PF03446_consen 1 MMKIGFIGLGNMG-----SAMARNLAKAGYEVTVYD 31 (163)
T ss_dssp -BEEEEE--SHHH-----HHHHHHHHHTTTEEEEEE
T ss_pred CCEEEEEchHHHH-----HHHHHHHHhcCCeEEeec
Confidence 6788888887665 578999999999998775
No 335
>PRK06321 replicative DNA helicase; Provisional
Probab=48.37 E-value=1.4e+02 Score=28.91 Aligned_cols=40 Identities=15% Similarity=0.245 Sum_probs=32.7
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHh-CCCeEEEEeCcccccc
Q 036519 17 CLVLSYPAQGHMNPLLQFSKRLEH-NGIKVTLVTTYFISKS 56 (365)
Q Consensus 17 il~~~~~~~GH~~p~l~la~~L~~-~Gh~Vt~~~~~~~~~~ 56 (365)
|++...|+.|-..=.+.+|...+. .|..|.|++.+-....
T Consensus 229 iiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~q 269 (472)
T PRK06321 229 MILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQ 269 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHH
Confidence 677888999999999999998874 5899999987754433
No 336
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=48.15 E-value=71 Score=26.43 Aligned_cols=60 Identities=17% Similarity=0.254 Sum_probs=40.3
Q ss_pred cE-EEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCcccccc---ccC---CCCCCCCeeEEEcCC
Q 036519 15 AH-CLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKS---LHR---DPSSSISIPLETISD 74 (365)
Q Consensus 15 ~~-il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~---v~~---~~~~~~gi~~~~l~~ 74 (365)
.+ |+|+..+..-|---...+++.|++.|.+|.+++.....+. ++. ......+-+|+.+|.
T Consensus 108 ~rivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G~~~~~~~~l~~~~~~~~~~~~s~~~~~~~ 174 (187)
T cd01452 108 QRIVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFGEIDDNTEKLTAFIDAVNGKDGSHLVSVPP 174 (187)
T ss_pred ceEEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeCCCCCCHHHHHHHHHHhcCCCCceEEEeCC
Confidence 35 7788888777877788999999999999998875533222 221 111223467777774
No 337
>PF04493 Endonuclease_5: Endonuclease V; InterPro: IPR007581 Endonuclease V is specific for single-stranded DNA, for duplex DNA that contains uracil, or that is damaged []. Matrix metalloproteinase-1 (MMP-1) is the major enzyme responsible for collagen 1 digestion. It is induced by exposure to sunlight, but is reduced with treatment of DNA repair enzyme endonuclease V []. This family consequently has potential medical importance []. This endonuclease also appears in bifunctional enzymes, such as the bifunctional methyltransferase/endonuclease in Thermoplasma acidophilum.; GO: 0004519 endonuclease activity, 0006281 DNA repair; PDB: 3GA2_A 2W36_A 3HD0_A 2W35_B 3GOC_B.
Probab=48.14 E-value=35 Score=28.73 Aligned_cols=42 Identities=14% Similarity=0.164 Sum_probs=27.6
Q ss_pred HHHHHHHhcC-CCcEEEEcCCCcc-------HHHHHHHhCCceEEEeccc
Q 036519 101 TLTELVERMN-DVDCIVYDSFLPW-------ALDVAKKFGLTGAAFLTQS 142 (365)
Q Consensus 101 ~l~~ll~~~~-~pD~vv~D~~~~~-------a~~~A~~~giP~v~~~~~~ 142 (365)
.+-++++++. +||+|++|.+... |..++-.+++|+|.+.-..
T Consensus 78 ~~l~~l~~l~~~~dvilvDG~G~~HpR~~GlA~HlGv~l~iPtIGVAK~~ 127 (206)
T PF04493_consen 78 CILEALEKLKNKPDVILVDGHGILHPRRFGLASHLGVLLDIPTIGVAKSL 127 (206)
T ss_dssp HHHHHHHTSSS--SCEEEES-SSSSTTS--HHHHHHHHHTS-EEEEESS-
T ss_pred HHHHHHHHhcccCCEEEEeCceeecCCCcChhheeeeccCCCEEEEeCcc
Confidence 3445556665 8999999965543 7788889999999876654
No 338
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=47.92 E-value=46 Score=25.03 Aligned_cols=37 Identities=11% Similarity=0.069 Sum_probs=33.2
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCcc
Q 036519 16 HCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYF 52 (365)
Q Consensus 16 ~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~ 52 (365)
||++..-++.|-..-...+++.|+++|.+|.++..+.
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 4788888999999999999999999999999887764
No 339
>PLN02501 digalactosyldiacylglycerol synthase
Probab=47.63 E-value=1.2e+02 Score=31.02 Aligned_cols=38 Identities=11% Similarity=0.198 Sum_probs=27.0
Q ss_pred HHHHHHHhcCCCcEEEEcC---CCcc--HHHHHHHhCCceEEEec
Q 036519 101 TLTELVERMNDVDCIVYDS---FLPW--ALDVAKKFGLTGAAFLT 140 (365)
Q Consensus 101 ~l~~ll~~~~~pD~vv~D~---~~~~--a~~~A~~~giP~v~~~~ 140 (365)
.+...+... +||+|..-. ..+. |..+|++++ |+|....
T Consensus 425 dI~~~L~~f-~PDVVHLatP~~LGw~~~Glr~ArKl~-PVVasyH 467 (794)
T PLN02501 425 DTSQFIPSK-DADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVH 467 (794)
T ss_pred HHHHHhhcc-CCCEEEECCchhhccHHHHHHHHHHcC-CeEEEEe
Confidence 456666666 999999762 3345 778999999 8874433
No 340
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=47.56 E-value=2.3e+02 Score=26.05 Aligned_cols=38 Identities=26% Similarity=0.371 Sum_probs=33.0
Q ss_pred EEEEcCCCCCChHHHHHHHHHHH-hCCCeEEEEeCcccc
Q 036519 17 CLVLSYPAQGHMNPLLQFSKRLE-HNGIKVTLVTTYFIS 54 (365)
Q Consensus 17 il~~~~~~~GH~~p~l~la~~L~-~~Gh~Vt~~~~~~~~ 54 (365)
++|...++.|-..=.-.|++.|. ++|+.|.+++.+++.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i 40 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDII 40 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccc
Confidence 46677789999999999999997 689999999998876
No 341
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=47.45 E-value=59 Score=29.55 Aligned_cols=32 Identities=22% Similarity=0.268 Sum_probs=24.2
Q ss_pred CCcEEE-EcCCC-ccHHHHHHHhCCceEEEeccc
Q 036519 111 DVDCIV-YDSFL-PWALDVAKKFGLTGAAFLTQS 142 (365)
Q Consensus 111 ~pD~vv-~D~~~-~~a~~~A~~~giP~v~~~~~~ 142 (365)
.||+|| .|... ..|..=|.++|||+|.+.-+.
T Consensus 152 ~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn 185 (326)
T PRK12311 152 LPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTN 185 (326)
T ss_pred CCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCC
Confidence 689888 45433 458899999999999875544
No 342
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=47.21 E-value=34 Score=29.93 Aligned_cols=35 Identities=20% Similarity=0.128 Sum_probs=31.3
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEe
Q 036519 15 AHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVT 49 (365)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~ 49 (365)
|.|.++.=|+-|...=...||..|+++|++|.++=
T Consensus 1 ~~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD 35 (267)
T cd02032 1 MVLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIG 35 (267)
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEe
Confidence 67888877899999999999999999999998873
No 343
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=47.17 E-value=42 Score=27.93 Aligned_cols=37 Identities=16% Similarity=0.319 Sum_probs=29.3
Q ss_pred cEEEEEcC--CCCCChHHHHHHHHHHHhCCCeEEEEeCc
Q 036519 15 AHCLVLSY--PAQGHMNPLLQFSKRLEHNGIKVTLVTTY 51 (365)
Q Consensus 15 ~~il~~~~--~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~ 51 (365)
+|++.++. ++-|-..=...||..|+++|++|.++=.+
T Consensus 17 ~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D 55 (204)
T TIGR01007 17 IKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGD 55 (204)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 56555554 57788899999999999999999987443
No 344
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=47.09 E-value=40 Score=28.14 Aligned_cols=38 Identities=26% Similarity=0.435 Sum_probs=30.3
Q ss_pred CcEEEEEcCCCCCChHHHHHH-HHHHHh-CCCeEEEEeCc
Q 036519 14 LAHCLVLSYPAQGHMNPLLQF-SKRLEH-NGIKVTLVTTY 51 (365)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~l-a~~L~~-~Gh~Vt~~~~~ 51 (365)
||||+++-+..+||..-+... ++.+.+ .|++|.++.-+
T Consensus 1 M~kilIvy~S~~G~T~~lA~~ia~g~~~~~G~ev~~~~l~ 40 (200)
T PRK03767 1 MAKVLVLYYSMYGHIETMAEAVAEGAREVAGAEVTIKRVP 40 (200)
T ss_pred CCeEEEEEcCCCCHHHHHHHHHHHHHhhcCCcEEEEEecc
Confidence 468999998889999998874 666666 89999877643
No 345
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=46.89 E-value=20 Score=34.31 Aligned_cols=32 Identities=22% Similarity=0.224 Sum_probs=25.8
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCc
Q 036519 15 AHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTY 51 (365)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~ 51 (365)
|||+++-.|-.| |+-|.+|+++||+||++-..
T Consensus 1 ~rVai~GaG~Ag-----L~~a~~La~~g~~vt~~ea~ 32 (485)
T COG3349 1 MRVAIAGAGLAG-----LAAAYELADAGYDVTLYEAR 32 (485)
T ss_pred CeEEEEcccHHH-----HHHHHHHHhCCCceEEEecc
Confidence 678887776554 78899999999999998544
No 346
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=46.88 E-value=1.2e+02 Score=25.95 Aligned_cols=32 Identities=13% Similarity=0.085 Sum_probs=23.8
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 036519 16 HCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTT 50 (365)
Q Consensus 16 ~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~ 50 (365)
|+++++.++.| =-.++|++|.++|++|+.+..
T Consensus 9 k~~lItGas~g---IG~aia~~l~~~G~~vv~~~~ 40 (251)
T PRK12481 9 KVAIITGCNTG---LGQGMAIGLAKAGADIVGVGV 40 (251)
T ss_pred CEEEEeCCCch---HHHHHHHHHHHCCCEEEEecC
Confidence 56667766542 457789999999999988754
No 347
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=46.57 E-value=1.5e+02 Score=26.99 Aligned_cols=38 Identities=11% Similarity=0.182 Sum_probs=31.7
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCcccc
Q 036519 17 CLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFIS 54 (365)
Q Consensus 17 il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~ 54 (365)
|.=++.|+.|-.--.+.|++.|.++|++|.+++-....
T Consensus 40 VGNltvGGTGKTP~v~~L~~~L~~~G~~~~IlSRGYg~ 77 (326)
T PF02606_consen 40 VGNLTVGGTGKTPLVIWLARLLQARGYRPAILSRGYGR 77 (326)
T ss_pred EcccccCCCCchHHHHHHHHHHHhcCCceEEEcCCCCC
Confidence 33456689999999999999999999999999876554
No 348
>PRK09165 replicative DNA helicase; Provisional
Probab=46.57 E-value=79 Score=30.76 Aligned_cols=41 Identities=12% Similarity=0.145 Sum_probs=32.8
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhC---------------CCeEEEEeCccccccc
Q 036519 17 CLVLSYPAQGHMNPLLQFSKRLEHN---------------GIKVTLVTTYFISKSL 57 (365)
Q Consensus 17 il~~~~~~~GH~~p~l~la~~L~~~---------------Gh~Vt~~~~~~~~~~v 57 (365)
+++...|+.|-..=.+.+|...+.+ |..|.|++.+-..+.+
T Consensus 220 ivIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql 275 (497)
T PRK09165 220 IILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQL 275 (497)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHH
Confidence 6778889999999999998888753 7889999887655444
No 349
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=46.50 E-value=26 Score=29.53 Aligned_cols=41 Identities=17% Similarity=0.146 Sum_probs=29.5
Q ss_pred HHHHHHhcC-CCcEEEEcCCCcc-------HHHHHHHhCCceEEEeccc
Q 036519 102 LTELVERMN-DVDCIVYDSFLPW-------ALDVAKKFGLTGAAFLTQS 142 (365)
Q Consensus 102 l~~ll~~~~-~pD~vv~D~~~~~-------a~~~A~~~giP~v~~~~~~ 142 (365)
+..+++++. .||+|+.|..... |..+.-.+++|+|.+.-+.
T Consensus 83 l~~~~~~l~~~PDlilVDG~G~~HpR~~GlA~HlGv~l~~PtIGVAK~~ 131 (208)
T cd06559 83 LLEALEKLKTKPDLLLVDGHGIAHPRRFGLASHLGVLLDLPTIGVAKSL 131 (208)
T ss_pred HHHHHHhCCCCCCEEEEeCCccccCCCcchhheeeeecCCCEEEEEccc
Confidence 445555553 7999999966543 6677778899999876543
No 350
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=46.41 E-value=36 Score=29.76 Aligned_cols=34 Identities=15% Similarity=0.084 Sum_probs=30.7
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEE
Q 036519 15 AHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLV 48 (365)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~ 48 (365)
|+|.+..=|+-|-..=++.||..|+++|++|.++
T Consensus 1 ~~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLli 34 (268)
T TIGR01281 1 MILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQI 34 (268)
T ss_pred CEEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEE
Confidence 6788886689999999999999999999999987
No 351
>PLN02949 transferase, transferring glycosyl groups
Probab=46.17 E-value=2.8e+02 Score=26.69 Aligned_cols=124 Identities=9% Similarity=-0.004 Sum_probs=61.3
Q ss_pred CCCcEEEEEcCC---CCCChHHHHHHHHHHHhCCC--eEEEEeCccc---ccc---cc-CC-CCCCCCeeEEEcC--CCC
Q 036519 12 SKLAHCLVLSYP---AQGHMNPLLQFSKRLEHNGI--KVTLVTTYFI---SKS---LH-RD-PSSSISIPLETIS--DGY 76 (365)
Q Consensus 12 ~~~~~il~~~~~---~~GH~~p~l~la~~L~~~Gh--~Vt~~~~~~~---~~~---v~-~~-~~~~~gi~~~~l~--~~~ 76 (365)
+++++|+|+=.. +.|==--+...+..|.++|| +|++.|+... .+- +. +- ........|+.+. +-+
T Consensus 31 ~~~~~v~f~HP~~~~ggG~ERvl~~a~~~l~~~~~~~~v~iyt~~~d~~~~~~l~~~~~~~~i~~~~~~~~v~l~~~~~~ 110 (463)
T PLN02949 31 SRKRAVGFFHPYTNDGGGGERVLWCAVRAIQEENPDLDCVIYTGDHDASPDSLAARARDRFGVELLSPPKVVHLRKRKWI 110 (463)
T ss_pred CCCcEEEEECCCCCCCCChhhHHHHHHHHHHhhCCCCeEEEEcCCCCCCHHHHHHHHHhhcceecCCCceEEEecccccc
Confidence 446677665332 23444566778899999998 7777775411 111 11 10 0000123444341 222
Q ss_pred CCCCCCCcCCHHHHHHHHHHHhHHHHHHHHHhcCCCcEEEEcCCCc-cHHHHHHHhCCceEEEeccc
Q 036519 77 DEGRSAQAETDQAYVDRFWQIGVQTLTELVERMNDVDCIVYDSFLP-WALDVAKKFGLTGAAFLTQS 142 (365)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~pD~vv~D~~~~-~a~~~A~~~giP~v~~~~~~ 142 (365)
+. . .... ...+....+.+...+..+.. . .| .|+.|++.+ ....+++-+++|++.+...+
T Consensus 111 ~~-~--~~~~-~t~~~~~~~~~~l~~~~~~~-~-~p-~v~vDt~~~~~~~pl~~~~~~~v~~yvH~p 170 (463)
T PLN02949 111 EE-E--TYPR-FTMIGQSLGSVYLAWEALCK-F-TP-LYFFDTSGYAFTYPLARLFGCKVVCYTHYP 170 (463)
T ss_pred cc-c--cCCc-eehHHHHHHHHHHHHHHHHh-c-CC-CEEEeCCCcccHHHHHHhcCCcEEEEEeCC
Confidence 22 1 0111 11222223333333344433 2 44 588898763 35566676699999877654
No 352
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=45.91 E-value=65 Score=28.90 Aligned_cols=88 Identities=15% Similarity=0.118 Sum_probs=46.5
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeC--ccccccccCCCCCCCCeeEEEcCCCCCCCCCCCcCCHHHHHH
Q 036519 15 AHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTT--YFISKSLHRDPSSSISIPLETISDGYDEGRSAQAETDQAYVD 92 (365)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~--~~~~~~v~~~~~~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~ 92 (365)
|+||+.-. .|=+-. ..+.+|.++||+|+++=. ..+.+.+.+ ...+|+.-+ +.+
T Consensus 1 ~~iLVtGG--AGYIGS--Htv~~Ll~~G~~vvV~DNL~~g~~~~v~~-----~~~~f~~gD--i~D-------------- 55 (329)
T COG1087 1 MKVLVTGG--AGYIGS--HTVRQLLKTGHEVVVLDNLSNGHKIALLK-----LQFKFYEGD--LLD-------------- 55 (329)
T ss_pred CeEEEecC--cchhHH--HHHHHHHHCCCeEEEEecCCCCCHHHhhh-----ccCceEEec--ccc--------------
Confidence 45555443 333322 346778899999999743 223333442 112333221 111
Q ss_pred HHHHHhHHHHHHHHHhcCCCcEEEEcCCCccHHHHHHHhCCceEE
Q 036519 93 RFWQIGVQTLTELVERMNDVDCIVYDSFLPWALDVAKKFGLTGAA 137 (365)
Q Consensus 93 ~~~~~~~~~l~~ll~~~~~pD~vv~D~~~~~a~~~A~~~giP~v~ 137 (365)
++.+++++++. +||.||.- ..-..+.+....|.-.
T Consensus 56 ------~~~L~~vf~~~-~idaViHF---Aa~~~VgESv~~Pl~Y 90 (329)
T COG1087 56 ------RALLTAVFEEN-KIDAVVHF---AASISVGESVQNPLKY 90 (329)
T ss_pred ------HHHHHHHHHhc-CCCEEEEC---ccccccchhhhCHHHH
Confidence 34578888888 99999843 2223344444444443
No 353
>PRK13236 nitrogenase reductase; Reviewed
Probab=45.78 E-value=45 Score=29.82 Aligned_cols=38 Identities=8% Similarity=0.051 Sum_probs=30.9
Q ss_pred CCCcEEEEEcC-CCCCChHHHHHHHHHHHhCCCeEEEEe
Q 036519 12 SKLAHCLVLSY-PAQGHMNPLLQFSKRLEHNGIKVTLVT 49 (365)
Q Consensus 12 ~~~~~il~~~~-~~~GH~~p~l~la~~L~~~Gh~Vt~~~ 49 (365)
.+.||++-+.. |+-|-.+-.+.||..|+++|++|.++-
T Consensus 3 ~~~~~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVLliD 41 (296)
T PRK13236 3 DENIRQIAFYGKGGIGKSTTSQNTLAAMAEMGQRILIVG 41 (296)
T ss_pred CcCceEEEEECCCcCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 34556655533 788999999999999999999999984
No 354
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.51 E-value=48 Score=26.49 Aligned_cols=42 Identities=14% Similarity=0.196 Sum_probs=29.4
Q ss_pred HHHHHHHhcC------CCcEEEEcCCCc----------cHHHHHHHhCCceEEEeccc
Q 036519 101 TLTELVERMN------DVDCIVYDSFLP----------WALDVAKKFGLTGAAFLTQS 142 (365)
Q Consensus 101 ~l~~ll~~~~------~pD~vv~D~~~~----------~a~~~A~~~giP~v~~~~~~ 142 (365)
.+++.+.++. +||+|++..-+- -|..+|+++|+|++-.+...
T Consensus 108 nvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~t 165 (219)
T KOG0081|consen 108 NVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACT 165 (219)
T ss_pred HHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeecccc
Confidence 3456666654 999999764331 27889999999998655443
No 355
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=45.48 E-value=52 Score=27.21 Aligned_cols=42 Identities=19% Similarity=0.316 Sum_probs=29.9
Q ss_pred HHHHHHHhcCCCc--EEEEcCCC-ccHHHHHHHhCCceEEEecccH
Q 036519 101 TLTELVERMNDVD--CIVYDSFL-PWALDVAKKFGLTGAAFLTQSC 143 (365)
Q Consensus 101 ~l~~ll~~~~~pD--~vv~D~~~-~~a~~~A~~~giP~v~~~~~~~ 143 (365)
.+.+++++. .++ ++|...+. ++|..+|++.|+|.|.+.|+..
T Consensus 48 ~l~~~i~~~-~~~~~~liGSSlGG~~A~~La~~~~~~avLiNPav~ 92 (187)
T PF05728_consen 48 QLEQLIEEL-KPENVVLIGSSLGGFYATYLAERYGLPAVLINPAVR 92 (187)
T ss_pred HHHHHHHhC-CCCCeEEEEEChHHHHHHHHHHHhCCCEEEEcCCCC
Confidence 456667766 433 66655444 5688999999999999887653
No 356
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=45.42 E-value=56 Score=30.65 Aligned_cols=42 Identities=12% Similarity=0.144 Sum_probs=29.1
Q ss_pred HHhHHHHHHHHHhcCCCcEEEEcCCCcc----------HHHHHHHhCCceEEE
Q 036519 96 QIGVQTLTELVERMNDVDCIVYDSFLPW----------ALDVAKKFGLTGAAF 138 (365)
Q Consensus 96 ~~~~~~l~~ll~~~~~pD~vv~D~~~~~----------a~~~A~~~giP~v~~ 138 (365)
+.....+-+++++. +||++|+-.-+-+ +..+.+++|||.+.-
T Consensus 62 eea~~~i~~mv~k~-~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt~ 113 (431)
T TIGR01918 62 EEAVARVLEMLKDK-EPDIFIAGPAFNAGRYGVACGEICKVVQDKLNVPAVTS 113 (431)
T ss_pred HHHHHHHHHHHHhc-CCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEE
Confidence 33344566777888 9999999854432 233556899999963
No 357
>PRK13194 pyrrolidone-carboxylate peptidase; Provisional
Probab=45.37 E-value=72 Score=26.91 Aligned_cols=26 Identities=27% Similarity=0.440 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCC--hHHHHHHHHHHHh
Q 036519 15 AHCLVLSYPAQGH--MNPLLQFSKRLEH 40 (365)
Q Consensus 15 ~~il~~~~~~~GH--~~p~l~la~~L~~ 40 (365)
|+|++..++-+|. .||.-.++++|..
T Consensus 1 M~ILvTGF~PF~~~~~NPS~~~~~~L~~ 28 (208)
T PRK13194 1 MKVLVTGFEPFGGDKKNPTMDIVKALDG 28 (208)
T ss_pred CEEEEEeeCCCCCCCCCcHHHHHHhccc
Confidence 7788888865554 8999999999965
No 358
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=45.32 E-value=56 Score=30.66 Aligned_cols=43 Identities=9% Similarity=0.151 Sum_probs=29.9
Q ss_pred HHHhHHHHHHHHHhcCCCcEEEEcCCCcc----------HHHHHHHhCCceEEE
Q 036519 95 WQIGVQTLTELVERMNDVDCIVYDSFLPW----------ALDVAKKFGLTGAAF 138 (365)
Q Consensus 95 ~~~~~~~l~~ll~~~~~pD~vv~D~~~~~----------a~~~A~~~giP~v~~ 138 (365)
.+.....+-+++++. +||++|+-.-+-+ +..+.+++|||.+.-
T Consensus 61 ~eea~~~i~~mv~k~-~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vta 113 (431)
T TIGR01917 61 LEEAKAKVLEMIKGA-NPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTA 113 (431)
T ss_pred HHHHHHHHHHHHHhc-CCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEE
Confidence 344445667778888 9999999854432 233556899999963
No 359
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=45.25 E-value=1.7e+02 Score=27.88 Aligned_cols=33 Identities=6% Similarity=0.140 Sum_probs=26.3
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCc
Q 036519 14 LAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTY 51 (365)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~ 51 (365)
+||||++..++..| +|++.|++.|++|.++-..
T Consensus 2 ~~kVLvlG~G~re~-----al~~~l~~~g~~v~~~~~~ 34 (435)
T PRK06395 2 TMKVMLVGSGGRED-----AIARAIKRSGAILFSVIGH 34 (435)
T ss_pred ceEEEEECCcHHHH-----HHHHHHHhCCCeEEEEECC
Confidence 58999988888777 5788898889888877543
No 360
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=45.24 E-value=4.3 Score=34.21 Aligned_cols=114 Identities=14% Similarity=0.094 Sum_probs=61.3
Q ss_pred CCCCChHHHHHHHHHHHhCCCeEEEEeCcccccc-ccCCCC-CCCCeeEEEcCCCCCCCCCCCcCCHHHHHHHHHHHhHH
Q 036519 23 PAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKS-LHRDPS-SSISIPLETISDGYDEGRSAQAETDQAYVDRFWQIGVQ 100 (365)
Q Consensus 23 ~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~-v~~~~~-~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (365)
-+..|+...+.++..++.+|=-+.|+++.+..+. +++ .+ ...|+.... .+....+..+......+.. ......
T Consensus 89 qT~~~Lr~A~~fVa~vA~r~GiILFv~tn~~~~~~ve~-aA~r~~gy~~~~---~w~~G~lTN~~~l~g~~~~-~~~~~p 163 (251)
T KOG0832|consen 89 QTASYLRRALNFVAHVAHRGGIILFVGTNNGFKDLVER-AARRAGGYSHNR---KWLGGLLTNARELFGALVR-KFLSLP 163 (251)
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEecCcchHHHHHH-HHHHhcCceeee---eeccceeecchhhcccccc-cccCCC
Confidence 3556788889999999999999999998765543 443 11 112232221 1111011111111111111 000111
Q ss_pred HHHHHHHhcCCCcEEEE-cCCC-ccHHHHHHHhCCceEEEeccc
Q 036519 101 TLTELVERMNDVDCIVY-DSFL-PWALDVAKKFGLTGAAFLTQS 142 (365)
Q Consensus 101 ~l~~ll~~~~~pD~vv~-D~~~-~~a~~~A~~~giP~v~~~~~~ 142 (365)
....++... .+|+||. |... ..|+.=|.+++||.|...=..
T Consensus 164 d~~~f~~t~-~~D~vvvln~~e~~sAilEA~K~~IPTIgIVDtN 206 (251)
T KOG0832|consen 164 DALCFLPTL-TPDLVVVLNPEENHSAILEAAKMAIPTIGIVDTN 206 (251)
T ss_pred cceeecccC-CcceeEecCcccccHHHHHHHHhCCCeEEEecCC
Confidence 122334444 7788874 5444 358999999999999865444
No 361
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=45.19 E-value=1.2e+02 Score=29.55 Aligned_cols=89 Identities=18% Similarity=0.122 Sum_probs=52.2
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHH-hCCCeEEEEeCccc-cc----cccCCCCCCCCeeEEEcCCCCCCCCCCCcCCH
Q 036519 14 LAHCLVLSYPAQGHMNPLLQFSKRLE-HNGIKVTLVTTYFI-SK----SLHRDPSSSISIPLETISDGYDEGRSAQAETD 87 (365)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~la~~L~-~~Gh~Vt~~~~~~~-~~----~v~~~~~~~~gi~~~~l~~~~~~~~~~~~~~~ 87 (365)
..|++++..|. -...+++.|. +-|.+|+.+++... .+ .++. .+-..+.++ +.
T Consensus 328 GKrvai~~gg~-----~~~~~~~~l~~ElGmevv~~~t~~~~~~d~~~~~~~-----~~~~~~~i~------------D~ 385 (513)
T TIGR01861 328 GKKVCLWPGGS-----KLWHWAHVIEEEMGLKVVSVYSKFGHQGDMEKGVAR-----CGEGALAID------------DP 385 (513)
T ss_pred CCEEEEECCch-----HHHHHHHHHHHhCCCEEEEEeccCCCHHHHHHHHHh-----CCCCcEEec------------CC
Confidence 46777777653 5667788888 58999988766542 22 1221 000111111 00
Q ss_pred HHHHHHHHHHhHHHHHHHHHhcCCCcEEEEcCCCccHHHHHHHhCCceEEE
Q 036519 88 QAYVDRFWQIGVQTLTELVERMNDVDCIVYDSFLPWALDVAKKFGLTGAAF 138 (365)
Q Consensus 88 ~~~~~~~~~~~~~~l~~ll~~~~~pD~vv~D~~~~~a~~~A~~~giP~v~~ 138 (365)
..+ ...+.+++. +||++|.... ...+|+++|||++-.
T Consensus 386 ~~~----------e~~~~l~~~-~~Dllig~s~---~~~~A~k~gIP~ld~ 422 (513)
T TIGR01861 386 NEL----------EGLEAMEML-KPDIILTGKR---PGEVSKKMRVPYLNA 422 (513)
T ss_pred CHH----------HHHHHHHhc-CCCEEEecCc---cchhHhhcCCCEEEc
Confidence 000 111344566 9999998865 447899999999763
No 362
>PRK04148 hypothetical protein; Provisional
Probab=45.06 E-value=53 Score=25.50 Aligned_cols=40 Identities=15% Similarity=0.177 Sum_probs=28.0
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEe-Ccccccccc
Q 036519 13 KLAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVT-TYFISKSLH 58 (365)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~-~~~~~~~v~ 58 (365)
+.++|+.+..| +| ..+|..|++.||+|+.+= .+...+.+.
T Consensus 16 ~~~kileIG~G-fG-----~~vA~~L~~~G~~ViaIDi~~~aV~~a~ 56 (134)
T PRK04148 16 KNKKIVELGIG-FY-----FKVAKKLKESGFDVIVIDINEKAVEKAK 56 (134)
T ss_pred cCCEEEEEEec-CC-----HHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 45789988888 55 346888889999999873 344344444
No 363
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=45.05 E-value=1.3e+02 Score=22.71 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=15.4
Q ss_pred HHhHHHHHHHHHhcCCCcEEEEc
Q 036519 96 QIGVQTLTELVERMNDVDCIVYD 118 (365)
Q Consensus 96 ~~~~~~l~~ll~~~~~pD~vv~D 118 (365)
......+.+++++. +||+|++=
T Consensus 86 ~~~~~~l~~~i~~~-~p~~V~t~ 107 (128)
T PF02585_consen 86 EELVRDLEDLIREF-RPDVVFTP 107 (128)
T ss_dssp HHHHHHHHHHHHHH--ESEEEEE
T ss_pred HHHHHHHHHHHHHc-CCCEEEEC
Confidence 34455678888888 99999854
No 364
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=44.92 E-value=23 Score=34.01 Aligned_cols=45 Identities=16% Similarity=0.110 Sum_probs=37.6
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCccccccccC
Q 036519 14 LAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLHR 59 (365)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~~ 59 (365)
.+||++...++.+= +-...|.++|+++|++|.++-++...+++..
T Consensus 70 ~k~IllgVtGsIAa-yka~~lvr~L~k~G~~V~VvmT~sA~~fv~p 114 (475)
T PRK13982 70 SKRVTLIIGGGIAA-YKALDLIRRLKERGAHVRCVLTKAAQQFVTP 114 (475)
T ss_pred CCEEEEEEccHHHH-HHHHHHHHHHHhCcCEEEEEECcCHHHHhhH
Confidence 56788887776654 4889999999999999999999988888774
No 365
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=44.90 E-value=1.8e+02 Score=24.10 Aligned_cols=81 Identities=20% Similarity=0.188 Sum_probs=46.0
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCC--eEEEEeCcc-cc---ccccCCCCCCCCeeEEEcCC-CCCCCCCCCcCCH
Q 036519 15 AHCLVLSYPAQGHMNPLLQFSKRLEHNGI--KVTLVTTYF-IS---KSLHRDPSSSISIPLETISD-GYDEGRSAQAETD 87 (365)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~la~~L~~~Gh--~Vt~~~~~~-~~---~~v~~~~~~~~gi~~~~l~~-~~~~~~~~~~~~~ 87 (365)
|||+++..+...- +.++.+.+.+.++ +|.++.+.. .. +.+++ .|+++..++. .+..
T Consensus 1 ~riail~sg~gs~---~~~ll~~~~~~~l~~~I~~vi~~~~~~~~~~~A~~-----~gip~~~~~~~~~~~--------- 63 (190)
T TIGR00639 1 KRIVVLISGNGSN---LQAIIDACKEGKIPASVVLVISNKPDAYGLERAAQ-----AGIPTFVLSLKDFPS--------- 63 (190)
T ss_pred CeEEEEEcCCChh---HHHHHHHHHcCCCCceEEEEEECCccchHHHHHHH-----cCCCEEEECccccCc---------
Confidence 5788887765544 4456666766554 777654442 22 23333 6788776541 1111
Q ss_pred HHHHHHHHHHhHHHHHHHHHhcCCCcEEEEcCC
Q 036519 88 QAYVDRFWQIGVQTLTELVERMNDVDCIVYDSF 120 (365)
Q Consensus 88 ~~~~~~~~~~~~~~l~~ll~~~~~pD~vv~D~~ 120 (365)
.....+.+.+.+++. +||++|+-.+
T Consensus 64 -------~~~~~~~~~~~l~~~-~~D~iv~~~~ 88 (190)
T TIGR00639 64 -------REAFDQAIIEELRAH-EVDLVVLAGF 88 (190)
T ss_pred -------hhhhhHHHHHHHHhc-CCCEEEEeCc
Confidence 111123456677777 9999997644
No 366
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=44.72 E-value=41 Score=28.17 Aligned_cols=40 Identities=20% Similarity=0.268 Sum_probs=31.1
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCc
Q 036519 12 SKLAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTY 51 (365)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~ 51 (365)
....||.|=..|+-|-.+.||.=|++|+++|.+|++..-+
T Consensus 3 rGrLkIflG~apGVGKTy~ML~ea~~l~~~G~DVViG~ve 42 (211)
T PF02702_consen 3 RGRLKIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYVE 42 (211)
T ss_dssp ---EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE--
T ss_pred CccEEEEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEEec
Confidence 4568899999999999999999999999999999986543
No 367
>TIGR03446 mycothiol_Mca mycothiol conjugate amidase Mca. Mycobacterium tuberculosis, Corynebacterium glutamicum, and related species use the thiol mycothiol in place of glutathione. This enzyme, homologous to the (dispensible) MshB enzyme of mycothiol biosynthesis, is described as an amidase that acts on conjugates to mycothiol. It is a detoxification enzyme.
Probab=44.69 E-value=1.2e+02 Score=27.04 Aligned_cols=19 Identities=11% Similarity=0.256 Sum_probs=14.6
Q ss_pred hHHHHHHHHHhcCCCcEEEE
Q 036519 98 GVQTLTELVERMNDVDCIVY 117 (365)
Q Consensus 98 ~~~~l~~ll~~~~~pD~vv~ 117 (365)
....+.+++++. +||+||+
T Consensus 109 ~~~~L~~iIr~~-~PdvVvT 127 (283)
T TIGR03446 109 AAEPLVRVIREF-RPHVITT 127 (283)
T ss_pred HHHHHHHHHHHc-CCEEEEe
Confidence 345677788888 9999986
No 368
>PRK08760 replicative DNA helicase; Provisional
Probab=44.64 E-value=69 Score=30.93 Aligned_cols=41 Identities=15% Similarity=0.176 Sum_probs=33.3
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHh-CCCeEEEEeCccccccc
Q 036519 17 CLVLSYPAQGHMNPLLQFSKRLEH-NGIKVTLVTTYFISKSL 57 (365)
Q Consensus 17 il~~~~~~~GH~~p~l~la~~L~~-~Gh~Vt~~~~~~~~~~v 57 (365)
|++...|+.|-..=.+.+|...+. .|+.|.|++.+-..+.+
T Consensus 232 ivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ql 273 (476)
T PRK08760 232 IILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQL 273 (476)
T ss_pred EEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHHH
Confidence 677888999999999999998874 59999999887554433
No 369
>PF01470 Peptidase_C15: Pyroglutamyl peptidase This is family C15 in the peptidase classification. ; InterPro: IPR000816 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C15 (pyroglutamyl peptidase I, clan CF). The type example being pyroglutamyl peptidase I of Bacillus amyloliquefaciens. Pyroglutamyl/pyrrolidone carboxyl peptidase (Pcp or PYRase) is an exopeptidase that hydrolytically removes the pGlu from pGlu-peptides or pGlu-proteins [, ]. PYRase has been found in prokaryotes and eukaryotes where at least two different classes have been characterised: the first containing bacterial and animal type I PYRases, and the second containing animal type II and serum PYRases. Type I and bacterial PYRases are soluble enzymes, while type II PYRases are membrane-bound. The primary application of PYRase has been its utilisation for protein or peptide sequencing, and bacterial diagnosis []. The conserved residues Cys-144 and His-168 have been identified by inhibition and mutagenesis studies [, ].; GO: 0006508 proteolysis; PDB: 1A2Z_A 1IU8_A 3RNZ_A 3RO0_D 1AUG_D 2EBJ_A 3LAC_A 1X12_B 1Z8X_B 1X10_C ....
Probab=43.93 E-value=76 Score=26.61 Aligned_cols=26 Identities=31% Similarity=0.445 Sum_probs=19.4
Q ss_pred cEEEEEcCCCCCC--hHHHHHHHHHHHh
Q 036519 15 AHCLVLSYPAQGH--MNPLLQFSKRLEH 40 (365)
Q Consensus 15 ~~il~~~~~~~GH--~~p~l~la~~L~~ 40 (365)
|||++..++-+|+ .||.-.++++|.+
T Consensus 1 m~ILvTGFgpF~~~~~NpS~~~v~~L~~ 28 (202)
T PF01470_consen 1 MRILVTGFGPFGGVPVNPSWELVKRLPG 28 (202)
T ss_dssp EEEEEEEE-S-TT-SS-HHHHHHHHHTT
T ss_pred CEEEEecccCCCCCCCChHHHHHHHcCC
Confidence 7898888876655 7999999999975
No 370
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=43.64 E-value=29 Score=30.75 Aligned_cols=53 Identities=19% Similarity=0.295 Sum_probs=36.0
Q ss_pred ccccccccccCChhhHHHHHH---cCCCeeeccccCchhhHHHHHHhHhcceeEecCCCCCcccHHHHHHHHHHHhcC
Q 036519 257 HEATGCFLTHCGWNSTIEALR---LGVPMLAMPLWTDQSTNSKYVMDVWKMGLKVPADEKGIVRREAIAHCIGEILEG 331 (365)
Q Consensus 257 ~~~~~~~I~hgG~gs~~eal~---~GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~ 331 (365)
.+|+ +|.-||-||+.+++. .++|++.++... . | -+. .++++++.+++.+++++
T Consensus 57 ~~d~--vi~iGGDGTlL~a~~~~~~~~pi~gIn~G~-----------l---G-Fl~-----~~~~~~~~~~l~~i~~g 112 (277)
T PRK03708 57 DVDF--IIAIGGDGTILRIEHKTKKDIPILGINMGT-----------L---G-FLT-----EVEPEETFFALSRLLEG 112 (277)
T ss_pred CCCE--EEEEeCcHHHHHHHHhcCCCCeEEEEeCCC-----------C---C-ccc-----cCCHHHHHHHHHHHHcC
Confidence 4677 999999999999984 356877776421 1 1 111 34567777777777765
No 371
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=43.25 E-value=79 Score=22.74 Aligned_cols=34 Identities=18% Similarity=0.147 Sum_probs=24.7
Q ss_pred CCcEEE--EcCCC----ccHHHHHHHhCCceEEEecccHH
Q 036519 111 DVDCIV--YDSFL----PWALDVAKKFGLTGAAFLTQSCT 144 (365)
Q Consensus 111 ~pD~vv--~D~~~----~~a~~~A~~~giP~v~~~~~~~~ 144 (365)
++|+|| +|... +.+...|++.++|++.....+..
T Consensus 48 ~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~~~~ 87 (97)
T PF10087_consen 48 KADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSRGVS 87 (97)
T ss_pred CCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCCCHH
Confidence 668886 55332 33789999999999998755544
No 372
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=43.16 E-value=45 Score=30.13 Aligned_cols=42 Identities=7% Similarity=-0.005 Sum_probs=31.5
Q ss_pred cEEEEEcCC---CCCChHHHHHHHHHHHhCCCeEEEEeCcccccc
Q 036519 15 AHCLVLSYP---AQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKS 56 (365)
Q Consensus 15 ~~il~~~~~---~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~ 56 (365)
|||+|+.-| --=+..-.+.|..+-++|||+|.++...+..-.
T Consensus 1 m~~~~~~~~~~~~~~~~~st~~L~~aa~~rG~~v~~~~~~~l~~~ 45 (312)
T TIGR01380 1 LKVAFQMDPIESINIGKDTTFALMEEAQKRGHELFFYEPGDLSVV 45 (312)
T ss_pred CeEEEEeCCHHHCCCCcChHHHHHHHHHHcCCEEEEEehhheEEE
Confidence 678888765 223445677889999999999999998876543
No 373
>cd08783 Death_MALT1 Death domain similar to that found in Mucosa-associated lymphoid tissue-lymphoma-translocation gene 1. Death domain (DD) similar to that found in Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1). Malt1, together with Bcl10 (B-cell lymphoma 10), are the integral components of the CBM signalosome. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells) and with CARMA1 to form L-CBM (CBM complex in lymphoid immune cells), to mediate activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins
Probab=43.15 E-value=1.3e+02 Score=21.79 Aligned_cols=51 Identities=16% Similarity=0.092 Sum_probs=36.9
Q ss_pred CchhhHHHHHHhHhcceeEecCCCCCcccHHHHHHHHHHHhcCH--HHHHHHHHHHHcCC
Q 036519 289 TDQSTNSKYVMDVWKMGLKVPADEKGIVRREAIAHCIGEILEGD--KWRNFAKEAVAKGG 346 (365)
Q Consensus 289 ~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~--~~~~~a~~~~~~~g 346 (365)
.|+..|+...+.+ |.+... ++++.++.+...+++.-. .-+.-.+-+...|+
T Consensus 20 ~~~~gWr~LAe~l-g~~~~f------r~S~~el~~cslkvl~p~gSPsk~LL~~~~~rg~ 72 (97)
T cd08783 20 ADGKGWRKLAELA-GSRGRF------RLSCLDLEQCSLKVLEPEGSPSRSLLKLLGERGC 72 (97)
T ss_pred CccCCHHHHHHHH-ccCCcc------ccCHHHHHHHHHHHhcCCCCchHHHHHHHHHcCC
Confidence 5678899999999 888743 489999999999999532 33444444455555
No 374
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.94 E-value=1.4e+02 Score=27.92 Aligned_cols=59 Identities=14% Similarity=0.214 Sum_probs=43.2
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCccccccccC---CCCCCCCeeEEE
Q 036519 13 KLAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLHR---DPSSSISIPLET 71 (365)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~~---~~~~~~gi~~~~ 71 (365)
++.=|+|+-.-+.|-..-|-.+|..++++|+.+-++|.+.|.+-.-. ..+...+++|+.
T Consensus 100 kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~yg 161 (483)
T KOG0780|consen 100 KPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYG 161 (483)
T ss_pred CCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEe
Confidence 34457777778999999999999999999999999998876543211 122235666654
No 375
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=42.84 E-value=2e+02 Score=23.96 Aligned_cols=99 Identities=13% Similarity=0.130 Sum_probs=59.9
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeC---c--ccc-ccccCCCCCCCCeeEEEcCCCCCCCCCCCcCCH
Q 036519 14 LAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTT---Y--FIS-KSLHRDPSSSISIPLETISDGYDEGRSAQAETD 87 (365)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~---~--~~~-~~v~~~~~~~~gi~~~~l~~~~~~~~~~~~~~~ 87 (365)
.-.|.+++..+.|-....+.+|-+...+|++|.++=. . ... ..+++ .+++.+.....++.- .. .+.
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~----l~~v~~~~~g~~~~~---~~-~~~ 93 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEF----GGGVEFHVMGTGFTW---ET-QDR 93 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhc----CCCcEEEECCCCCcc---cC-CCc
Confidence 3469999999999999999999999999999997632 1 111 22221 136888777654332 11 122
Q ss_pred HHHHHHHHHHhHHHHHHHHHhcCCCcEEEEcCCCc
Q 036519 88 QAYVDRFWQIGVQTLTELVERMNDVDCIVYDSFLP 122 (365)
Q Consensus 88 ~~~~~~~~~~~~~~l~~ll~~~~~pD~vv~D~~~~ 122 (365)
...... .........+.+.+- +.|+||.|-...
T Consensus 94 ~e~~~~-~~~~~~~a~~~l~~~-~ydlvVLDEi~~ 126 (191)
T PRK05986 94 ERDIAA-AREGWEEAKRMLADE-SYDLVVLDELTY 126 (191)
T ss_pred HHHHHH-HHHHHHHHHHHHhCC-CCCEEEEehhhH
Confidence 222222 222222334444444 889999996543
No 376
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=42.79 E-value=51 Score=30.68 Aligned_cols=69 Identities=20% Similarity=0.275 Sum_probs=44.3
Q ss_pred ccccccCChhhHHHHHHc------------C-----CCeeeccccCchhhHHHHHHhHhcceeEec-CCCCCcccHHHHH
Q 036519 261 GCFLTHCGWNSTIEALRL------------G-----VPMLAMPLWTDQSTNSKYVMDVWKMGLKVP-ADEKGIVRREAIA 322 (365)
Q Consensus 261 ~~~I~hgG~gs~~eal~~------------G-----vP~v~~P~~~DQ~~nA~~v~~~~G~G~~~~-~~~~~~~~~~~l~ 322 (365)
..++|.||..+..-|+.+ | .|.+.++-.. |+-..+.+.-+ |+|+..- .+++++.+.++|.
T Consensus 105 ~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~a-H~S~~Kaa~~l-Glg~~~I~~~~~~~md~~~L~ 182 (373)
T PF00282_consen 105 GGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQA-HYSIEKAARIL-GLGVRKIPTDEDGRMDIEALE 182 (373)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS--THHHHHHHHT-TSEEEEE-BBTTSSB-HHHHH
T ss_pred ceeEeccchHHHHHHHHHHHHHHhhhhhhccccccccccccccccc-ccHHHHhccee-eeEEEEecCCcchhhhHHHhh
Confidence 348999998888777633 2 3555554433 45555555555 9995443 3345789999999
Q ss_pred HHHHHHhcC
Q 036519 323 HCIGEILEG 331 (365)
Q Consensus 323 ~~i~~ll~~ 331 (365)
++|.+...+
T Consensus 183 ~~l~~~~~~ 191 (373)
T PF00282_consen 183 KALEKDIAN 191 (373)
T ss_dssp HHHHHHHHT
T ss_pred hhhcccccc
Confidence 999887644
No 377
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=42.70 E-value=40 Score=20.47 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=17.7
Q ss_pred cHHHHHHHHHHHhcC-HHHHHHHHH
Q 036519 317 RREAIAHCIGEILEG-DKWRNFAKE 340 (365)
Q Consensus 317 ~~~~l~~~i~~ll~~-~~~~~~a~~ 340 (365)
+.++|.+||..+.++ -++++.|++
T Consensus 1 tee~l~~Ai~~v~~g~~S~r~AA~~ 25 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNGKMSIRKAAKK 25 (45)
T ss_dssp -HHHHHHHHHHHHTTSS-HHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 478999999999987 467776664
No 378
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.54 E-value=1.6e+02 Score=25.50 Aligned_cols=39 Identities=21% Similarity=0.190 Sum_probs=30.1
Q ss_pred HHHHHHHHHhcCCCcEEEEcCCCcc---HHHHHHHhCCceEE
Q 036519 99 VQTLTELVERMNDVDCIVYDSFLPW---ALDVAKKFGLTGAA 137 (365)
Q Consensus 99 ~~~l~~ll~~~~~pD~vv~D~~~~~---a~~~A~~~giP~v~ 137 (365)
...+..+++++++-++.+.|..+.. +..+|++.|||++.
T Consensus 137 ~~aM~~~m~~Lk~r~l~flDs~T~a~S~a~~iAk~~gVp~~~ 178 (250)
T COG2861 137 EDAMEKLMEALKERGLYFLDSGTIANSLAGKIAKEIGVPVIK 178 (250)
T ss_pred HHHHHHHHHHHHHCCeEEEcccccccchhhhhHhhcCCceee
Confidence 4456666666666689999977654 67899999999986
No 379
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=42.26 E-value=1.8e+02 Score=26.21 Aligned_cols=101 Identities=14% Similarity=0.102 Sum_probs=57.6
Q ss_pred cEEEEEcCCCCC-----ChHHHHHHHHHHHhCCCeEEEEeCccccccccCCCCCCCCeeEEEcCCCCCCCCCCCcCCHHH
Q 036519 15 AHCLVLSYPAQG-----HMNPLLQFSKRLEHNGIKVTLVTTYFISKSLHRDPSSSISIPLETISDGYDEGRSAQAETDQA 89 (365)
Q Consensus 15 ~~il~~~~~~~G-----H~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~~~~~~~~gi~~~~l~~~~~~~~~~~~~~~~~ 89 (365)
.-|++.++.+.| ...-+.+|++.|.++|.+|.++++++-.+..++ +.- ..+....+ .....+
T Consensus 175 ~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~e~~~~~~-------i~~-~~~~~~~~--l~g~~s--- 241 (334)
T TIGR02195 175 PIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAKDHPAGNE-------IEA-LLPGELRN--LAGETS--- 241 (334)
T ss_pred CEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChhhHHHHHH-------HHH-hCCccccc--CCCCCC---
Confidence 345555544333 234688999999988999999988765544332 100 00000000 000001
Q ss_pred HHHHHHHHhHHHHHHHHHhcCCCcEEEEcCCCccHHHHHHHhCCceEEEeccc
Q 036519 90 YVDRFWQIGVQTLTELVERMNDVDCIVYDSFLPWALDVAKKFGLTGAAFLTQS 142 (365)
Q Consensus 90 ~~~~~~~~~~~~l~~ll~~~~~pD~vv~D~~~~~a~~~A~~~giP~v~~~~~~ 142 (365)
-..+..+++ +.|++|+. -.....+|.-+|+|+|.++-..
T Consensus 242 ---------L~el~ali~---~a~l~I~~--DSGp~HlAaA~~~P~i~lfG~t 280 (334)
T TIGR02195 242 ---------LDEAVDLIA---LAKAVVTN--DSGLMHVAAALNRPLVALYGST 280 (334)
T ss_pred ---------HHHHHHHHH---hCCEEEee--CCHHHHHHHHcCCCEEEEECCC
Confidence 123344555 45899944 2457899999999999876543
No 380
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=42.26 E-value=1.7e+02 Score=24.81 Aligned_cols=33 Identities=6% Similarity=0.009 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEe
Q 036519 14 LAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVT 49 (365)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~ 49 (365)
||+.++++.++ |-+ -..+++.|.++|++|.+..
T Consensus 1 m~k~ilItGas-~gi--G~~la~~l~~~g~~v~~~~ 33 (248)
T PRK06947 1 MRKVVLITGAS-RGI--GRATAVLAAARGWSVGINY 33 (248)
T ss_pred CCcEEEEeCCC-CcH--HHHHHHHHHHCCCEEEEEe
Confidence 34555666544 322 3678999999999997654
No 381
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=42.21 E-value=42 Score=32.74 Aligned_cols=34 Identities=9% Similarity=0.266 Sum_probs=26.0
Q ss_pred HHHHHHhcCCCcEEEEcCCCccHHHHHHHhCCceEEEe
Q 036519 102 LTELVERMNDVDCIVYDSFLPWALDVAKKFGLTGAAFL 139 (365)
Q Consensus 102 l~~ll~~~~~pD~vv~D~~~~~a~~~A~~~giP~v~~~ 139 (365)
+.+++++. +||+|+.+. +...+|+++|||++.+.
T Consensus 366 i~~~I~~~-~pdliiGs~---~er~ia~~lgiP~~~is 399 (513)
T CHL00076 366 VGDMIARV-EPSAIFGTQ---MERHIGKRLDIPCGVIS 399 (513)
T ss_pred HHHHHHhc-CCCEEEECc---hhhHHHHHhCCCEEEee
Confidence 34555555 899999885 46677999999998753
No 382
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=41.95 E-value=51 Score=31.06 Aligned_cols=36 Identities=14% Similarity=0.239 Sum_probs=30.4
Q ss_pred CcEEEEEcC--CCCCChHHHHHHHHHHHhCCCeEEEEe
Q 036519 14 LAHCLVLSY--PAQGHMNPLLQFSKRLEHNGIKVTLVT 49 (365)
Q Consensus 14 ~~~il~~~~--~~~GH~~p~l~la~~L~~~Gh~Vt~~~ 49 (365)
+|+|+.+.. |+-|-..-.+.||..|+.+|++|.++=
T Consensus 120 ~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlID 157 (405)
T PRK13869 120 HLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVD 157 (405)
T ss_pred CceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEc
Confidence 556655554 799999999999999999999999883
No 383
>PRK08862 short chain dehydrogenase; Provisional
Probab=41.90 E-value=1.5e+02 Score=25.07 Aligned_cols=32 Identities=9% Similarity=0.120 Sum_probs=23.7
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 036519 16 HCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTT 50 (365)
Q Consensus 16 ~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~ 50 (365)
+.++++.++.| + -.++|++|.++|++|.++..
T Consensus 6 k~~lVtGas~G-I--G~aia~~la~~G~~V~~~~r 37 (227)
T PRK08862 6 SIILITSAGSV-L--GRTISCHFARLGATLILCDQ 37 (227)
T ss_pred eEEEEECCccH-H--HHHHHHHHHHCCCEEEEEcC
Confidence 45666666553 2 67899999999999988754
No 384
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=41.84 E-value=43 Score=32.71 Aligned_cols=31 Identities=16% Similarity=0.117 Sum_probs=23.9
Q ss_pred HHHHhcCCCcEEEEcCCCccHHHHHHHhCCceEEE
Q 036519 104 ELVERMNDVDCIVYDSFLPWALDVAKKFGLTGAAF 138 (365)
Q Consensus 104 ~ll~~~~~pD~vv~D~~~~~a~~~A~~~giP~v~~ 138 (365)
+++.+. +||++|.+. .+..+|+++|||++.+
T Consensus 431 ~~l~~~-~~DlliG~s---~~k~~a~~~giPlir~ 461 (515)
T TIGR01286 431 SLVFTE-PVDFLIGNS---YGKYIQRDTLVPLIRI 461 (515)
T ss_pred HHHhhc-CCCEEEECc---hHHHHHHHcCCCEEEe
Confidence 444444 899999874 4788999999999875
No 385
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=41.80 E-value=2.1e+02 Score=23.95 Aligned_cols=39 Identities=21% Similarity=0.336 Sum_probs=31.6
Q ss_pred CcEEEEEcCC-CCCChHHHHHHHHHHHhCCCeEEEEeCcc
Q 036519 14 LAHCLVLSYP-AQGHMNPLLQFSKRLEHNGIKVTLVTTYF 52 (365)
Q Consensus 14 ~~~il~~~~~-~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~ 52 (365)
+.++-|+..| ..|-..-+|.-++....+|-+|.++.+.-
T Consensus 3 ~g~l~~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~i 42 (201)
T COG1435 3 MGWLEFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPAI 42 (201)
T ss_pred eEEEEEEEccCcCcchHHHHHHHHHHHHcCCeEEEEeccc
Confidence 4456666666 45999999999999999999999988763
No 386
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=41.59 E-value=88 Score=21.93 Aligned_cols=46 Identities=9% Similarity=0.039 Sum_probs=33.7
Q ss_pred ccHHHHHHHHHHHhcC-HHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc
Q 036519 316 VRREAIAHCIGEILEG-DKWRNFAKEAVAKGGSSDKNIDDFVANLISS 362 (365)
Q Consensus 316 ~~~~~l~~~i~~ll~~-~~~~~~a~~~~~~~g~s~~~~~~~~~~i~~~ 362 (365)
-+-..|.++.+.+... ..+.+.+.++.++.+. +..++.++++|.+.
T Consensus 31 ~~i~~l~~ayr~l~~~~~~~~~a~~~l~~~~~~-~~~v~~~~~Fi~~S 77 (83)
T PF13720_consen 31 EEISALRRAYRILFRSGLTLEEALEELEEEYPD-SPEVREIVDFIRNS 77 (83)
T ss_dssp HHHHHHHHHHHHHHTSSS-HHHHHHHHHHHTTS-CHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccC-CHHHHHHHHHHHhC
Confidence 3556678888888754 4888888888776554 66899999999854
No 387
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=41.52 E-value=1.4e+02 Score=25.68 Aligned_cols=33 Identities=9% Similarity=0.115 Sum_probs=23.6
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCc
Q 036519 16 HCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTY 51 (365)
Q Consensus 16 ~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~ 51 (365)
|+++++.++ |.+ -..+|++|.++|++|+++...
T Consensus 16 k~vlItGas-~gI--G~~ia~~l~~~G~~v~~~~~~ 48 (258)
T PRK06935 16 KVAIVTGGN-TGL--GQGYAVALAKAGADIIITTHG 48 (258)
T ss_pred CEEEEeCCC-chH--HHHHHHHHHHCCCEEEEEeCC
Confidence 455555543 333 478899999999999988655
No 388
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=41.49 E-value=34 Score=33.87 Aligned_cols=54 Identities=20% Similarity=0.399 Sum_probs=39.3
Q ss_pred ccccccccccCChhhHHHHHHc----CCCeeeccccCchhhHHHHHHhHhcceeEecCCCCCcccHHHHHHHHHHHhcCH
Q 036519 257 HEATGCFLTHCGWNSTIEALRL----GVPMLAMPLWTDQSTNSKYVMDVWKMGLKVPADEKGIVRREAIAHCIGEILEGD 332 (365)
Q Consensus 257 ~~~~~~~I~hgG~gs~~eal~~----GvP~v~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~ 332 (365)
.+|+ +|+-||=||+..+.+. ++|++.+-+.. + |. +. +.+++++.+++.+++++.
T Consensus 348 ~~dl--vi~lGGDGT~L~aa~~~~~~~~PilGin~G~-----------l-GF---L~-----~~~~~~~~~~l~~~~~g~ 405 (569)
T PRK14076 348 EISH--IISIGGDGTVLRASKLVNGEEIPIICINMGT-----------V-GF---LT-----EFSKEEIFKAIDSIISGE 405 (569)
T ss_pred CCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEcCCC-----------C-Cc---Cc-----ccCHHHHHHHHHHHHcCC
Confidence 4677 9999999999999773 77877774311 2 22 22 567888889999888663
No 389
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=41.47 E-value=77 Score=25.48 Aligned_cols=26 Identities=35% Similarity=0.432 Sum_probs=21.1
Q ss_pred ccccccCCh------hhHHHHHHcCCCeeecc
Q 036519 261 GCFLTHCGW------NSTIEALRLGVPMLAMP 286 (365)
Q Consensus 261 ~~~I~hgG~------gs~~eal~~GvP~v~~P 286 (365)
+++++|.|- +.+.+|...++|+|++.
T Consensus 65 ~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~ 96 (164)
T cd07039 65 GVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIA 96 (164)
T ss_pred EEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 337888774 56789999999999996
No 390
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=41.41 E-value=50 Score=26.49 Aligned_cols=27 Identities=26% Similarity=0.347 Sum_probs=20.5
Q ss_pred ccccccCC------hhhHHHHHHcCCCeeeccc
Q 036519 261 GCFLTHCG------WNSTIEALRLGVPMLAMPL 287 (365)
Q Consensus 261 ~~~I~hgG------~gs~~eal~~GvP~v~~P~ 287 (365)
++++++.| .+.+.+|...++|+|++.-
T Consensus 61 gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 93 (162)
T cd07038 61 GALVTTYGVGELSALNGIAGAYAEHVPVVHIVG 93 (162)
T ss_pred EEEEEcCCccHHHHHHHHHHHHHcCCCEEEEec
Confidence 33677766 3567889999999999963
No 391
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=41.33 E-value=45 Score=32.59 Aligned_cols=34 Identities=12% Similarity=0.214 Sum_probs=25.5
Q ss_pred HHHHHHhcCCCcEEEEcCCCccHHHHHHHhCCceEEEe
Q 036519 102 LTELVERMNDVDCIVYDSFLPWALDVAKKFGLTGAAFL 139 (365)
Q Consensus 102 l~~ll~~~~~pD~vv~D~~~~~a~~~A~~~giP~v~~~ 139 (365)
+.+.+++. +||+||.+. ....+|+++|||++.+.
T Consensus 354 l~~~i~~~-~PdliiG~~---~er~~a~~lgiP~~~i~ 387 (519)
T PRK02910 354 VEDAIAEA-APELVLGTQ---MERHSAKRLGIPCAVIS 387 (519)
T ss_pred HHHHHHhc-CCCEEEEcc---hHHHHHHHcCCCEEEec
Confidence 34455555 899999885 47789999999997653
No 392
>PRK13695 putative NTPase; Provisional
Probab=41.30 E-value=1.3e+02 Score=24.20 Aligned_cols=32 Identities=22% Similarity=0.326 Sum_probs=28.4
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEE
Q 036519 15 AHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVT 46 (365)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt 46 (365)
|+|++.-.++.|=-.=+-.++..|..+|+.+.
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~~l~~~G~~~~ 32 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAELLKEEGYKVG 32 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 78999999999999988899999988898865
No 393
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=40.86 E-value=47 Score=27.05 Aligned_cols=29 Identities=14% Similarity=0.098 Sum_probs=20.1
Q ss_pred CCcEEEEcCCCcc--HHHHHHHhCCceEEEe
Q 036519 111 DVDCIVYDSFLPW--ALDVAKKFGLTGAAFL 139 (365)
Q Consensus 111 ~pD~vv~D~~~~~--a~~~A~~~giP~v~~~ 139 (365)
+||+||....... ....-++.|||++.+.
T Consensus 69 ~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~ 99 (186)
T cd01141 69 KPDLVILYGGFQAQTILDKLEQLGIPVLYVN 99 (186)
T ss_pred CCCEEEEecCCCchhHHHHHHHcCCCEEEeC
Confidence 9999998644332 3344568899998753
No 394
>PRK05636 replicative DNA helicase; Provisional
Probab=40.67 E-value=69 Score=31.20 Aligned_cols=41 Identities=12% Similarity=0.219 Sum_probs=32.0
Q ss_pred EEEEcCCCCCChHHHHHHHHHHH-hCCCeEEEEeCccccccc
Q 036519 17 CLVLSYPAQGHMNPLLQFSKRLE-HNGIKVTLVTTYFISKSL 57 (365)
Q Consensus 17 il~~~~~~~GH~~p~l~la~~L~-~~Gh~Vt~~~~~~~~~~v 57 (365)
|++...|+.|-..=.+.+|...+ +.|..|.|++.+-....+
T Consensus 268 iiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql 309 (505)
T PRK05636 268 IIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEI 309 (505)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHH
Confidence 67788899999999999998876 458899888877554333
No 395
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=40.56 E-value=1.7e+02 Score=27.63 Aligned_cols=35 Identities=9% Similarity=0.023 Sum_probs=25.4
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCcccc
Q 036519 15 AHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFIS 54 (365)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~ 54 (365)
|||+++-.+..+ ..|++++++-|+.++++..+.+.
T Consensus 1 ~kiliiG~G~~~-----~~l~~~~~~~~~~~~~~~~~~~~ 35 (423)
T TIGR00877 1 MKVLVIGNGGRE-----HALAWKLAQSPLVKYVYVAPGNA 35 (423)
T ss_pred CEEEEECCChHH-----HHHHHHHHhCCCccEEEEECCCH
Confidence 688888887774 46788888888777777655543
No 396
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=40.41 E-value=55 Score=30.60 Aligned_cols=40 Identities=10% Similarity=0.196 Sum_probs=32.1
Q ss_pred CCCcEEEEEcC--CCCCChHHHHHHHHHHHhCCCeEEEEeCc
Q 036519 12 SKLAHCLVLSY--PAQGHMNPLLQFSKRLEHNGIKVTLVTTY 51 (365)
Q Consensus 12 ~~~~~il~~~~--~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~ 51 (365)
+.+++|+.+.. |+-|-..-.+.||..|+++|++|.++=.+
T Consensus 101 g~~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D 142 (387)
T TIGR03453 101 GEHLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAIDLD 142 (387)
T ss_pred CCCceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEEecC
Confidence 34566655544 79999999999999999999999988443
No 397
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=40.38 E-value=61 Score=28.15 Aligned_cols=104 Identities=10% Similarity=0.058 Sum_probs=52.9
Q ss_pred HHHHHHHhCCCeEEEEeCccccccccCCCCCCCCeeEEEcCCCCCCCCCCCcCC-HHHHHHHHHHHhHHHHHHHHHhcCC
Q 036519 33 QFSKRLEHNGIKVTLVTTYFISKSLHRDPSSSISIPLETISDGYDEGRSAQAET-DQAYVDRFWQIGVQTLTELVERMND 111 (365)
Q Consensus 33 ~la~~L~~~Gh~Vt~~~~~~~~~~v~~~~~~~~gi~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~ll~~~~~ 111 (365)
+.++.+.+.|-+|.+.++.++.....+ ......+-+..+|..-+........- ....+..--....+.=..++++. +
T Consensus 119 ea~~~~~~~~~rVflt~G~~~l~~f~~-~~~~~~~~~Rvlp~~~~~~~~~~~~~p~~~Iia~~GPfs~~~n~all~q~-~ 196 (257)
T COG2099 119 EAAEAAKQLGRRVFLTTGRQNLAHFVA-ADAHSHVLARVLPPPDVLAKCEDLGVPPARIIAMRGPFSEEDNKALLEQY-R 196 (257)
T ss_pred HHHHHHhccCCcEEEecCccchHHHhc-CcccceEEEEEcCchHHHHHHHhcCCChhhEEEecCCcChHHHHHHHHHh-C
Confidence 445555555666666666666655543 11122455555552111100000000 01111110112233335778888 9
Q ss_pred CcEEEEcCCCcc-----HHHHHHHhCCceEEE
Q 036519 112 VDCIVYDSFLPW-----ALDVAKKFGLTGAAF 138 (365)
Q Consensus 112 pD~vv~D~~~~~-----a~~~A~~~giP~v~~ 138 (365)
.|+||+-...-. =..+|+++|||+|.+
T Consensus 197 id~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I 228 (257)
T COG2099 197 IDVVVTKNSGGAGGTYEKIEAARELGIPVIMI 228 (257)
T ss_pred CCEEEEccCCcccCcHHHHHHHHHcCCcEEEE
Confidence 999998744322 368999999999985
No 398
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=40.26 E-value=48 Score=23.79 Aligned_cols=28 Identities=25% Similarity=0.386 Sum_probs=20.2
Q ss_pred EEcCCCCC--Ch--HHHHHHHHHHHhCCCeEE
Q 036519 19 VLSYPAQG--HM--NPLLQFSKRLEHNGIKVT 46 (365)
Q Consensus 19 ~~~~~~~G--H~--~p~l~la~~L~~~Gh~Vt 46 (365)
+++.|..| +. ..+-..+++|+++||+|.
T Consensus 2 YIaGPmtG~~~~N~~~f~~~a~~L~~~G~~vv 33 (92)
T PF14359_consen 2 YIAGPMTGLPDYNRPAFNAAAKRLRAKGYEVV 33 (92)
T ss_pred eEeCCcCCCcchHHHHHHHHHHHHHHCCCEEe
Confidence 35556555 33 567788999999998875
No 399
>PLN00016 RNA-binding protein; Provisional
Probab=40.19 E-value=41 Score=31.18 Aligned_cols=38 Identities=21% Similarity=0.228 Sum_probs=25.8
Q ss_pred CCcEEEEEcC--CCCCChHHHHHHHHHHHhCCCeEEEEeCcc
Q 036519 13 KLAHCLVLSY--PAQGHMNPLLQFSKRLEHNGIKVTLVTTYF 52 (365)
Q Consensus 13 ~~~~il~~~~--~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~ 52 (365)
.+++|+++.. |+.|.+ ...|+++|.++||+|+.++-..
T Consensus 51 ~~~~VLVt~~~~GatG~i--G~~lv~~L~~~G~~V~~l~R~~ 90 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFI--GFYLAKELVKAGHEVTLFTRGK 90 (378)
T ss_pred ccceEEEEeccCCCceeE--hHHHHHHHHHCCCEEEEEecCC
Confidence 3467777622 344444 3567889999999999887543
No 400
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=40.16 E-value=48 Score=27.52 Aligned_cols=31 Identities=19% Similarity=0.308 Sum_probs=26.5
Q ss_pred CCcEEEEcCCCccHHHHHHHhCCceEEEecc
Q 036519 111 DVDCIVYDSFLPWALDVAKKFGLTGAAFLTQ 141 (365)
Q Consensus 111 ~pD~vv~D~~~~~a~~~A~~~giP~v~~~~~ 141 (365)
++.+|++|--..++..-|++.|||...+...
T Consensus 29 ~i~~Visd~~~A~~lerA~~~gIpt~~~~~k 59 (200)
T COG0299 29 EIVAVISDKADAYALERAAKAGIPTVVLDRK 59 (200)
T ss_pred EEEEEEeCCCCCHHHHHHHHcCCCEEEeccc
Confidence 6889999987778999999999999886443
No 401
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=40.10 E-value=51 Score=31.33 Aligned_cols=35 Identities=11% Similarity=0.264 Sum_probs=26.1
Q ss_pred HHHHHHhcCCCcEEEEcCCCccHHHHHHHhCCceEEEec
Q 036519 102 LTELVERMNDVDCIVYDSFLPWALDVAKKFGLTGAAFLT 140 (365)
Q Consensus 102 l~~ll~~~~~pD~vv~D~~~~~a~~~A~~~giP~v~~~~ 140 (365)
+.+++++. +||++|.+. ....+|+++|+|++.+..
T Consensus 362 ~~~~i~~~-~pdliig~~---~~~~~a~~~gip~~~~~~ 396 (430)
T cd01981 362 VGDMIART-EPELIFGTQ---MERHIGKRLDIPCAVISA 396 (430)
T ss_pred HHHHHHhh-CCCEEEecc---hhhHHHHHcCCCEEEEeC
Confidence 34455555 899999885 366678999999987643
No 402
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=39.60 E-value=2.3e+02 Score=24.23 Aligned_cols=44 Identities=16% Similarity=-0.077 Sum_probs=34.7
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCccccccc
Q 036519 14 LAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSL 57 (365)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v 57 (365)
..-+++...|+.|-..=.+.++.+-.++|-.+.|++++...+.+
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~i 64 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQV 64 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHHH
Confidence 34577888899999988888877766889999999988665444
No 403
>PLN02735 carbamoyl-phosphate synthase
Probab=39.55 E-value=2.5e+02 Score=30.53 Aligned_cols=39 Identities=23% Similarity=0.278 Sum_probs=30.7
Q ss_pred CcEEEEEcCCC--CCCh----HHHHHHHHHHHhCCCeEEEEeCcc
Q 036519 14 LAHCLVLSYPA--QGHM----NPLLQFSKRLEHNGIKVTLVTTYF 52 (365)
Q Consensus 14 ~~~il~~~~~~--~GH~----~p~l~la~~L~~~Gh~Vt~~~~~~ 52 (365)
.+||+++..|. .|+. ....+++++|++.|++|+.+....
T Consensus 23 ~kkVLiiGsG~~~igqa~e~d~SG~q~~kaLke~G~~Vi~vd~np 67 (1102)
T PLN02735 23 LKKIMILGAGPIVIGQACEFDYSGTQACKALKEEGYEVVLINSNP 67 (1102)
T ss_pred CCEEEEECCCccccccceeecchHHHHHHHHHHcCCEEEEEeCCc
Confidence 56899988875 3544 457899999999999999887544
No 404
>PRK13197 pyrrolidone-carboxylate peptidase; Provisional
Probab=39.47 E-value=1e+02 Score=26.17 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCCC--hHHHHHHHHHHHh
Q 036519 14 LAHCLVLSYPAQGH--MNPLLQFSKRLEH 40 (365)
Q Consensus 14 ~~~il~~~~~~~GH--~~p~l~la~~L~~ 40 (365)
||+||+..++-+|+ .||.-.++++|..
T Consensus 1 m~~ILvTGF~PF~~~~~NPS~~~~~~L~~ 29 (215)
T PRK13197 1 MMKILVTGFDPFGGEKINPSWEAVKQLPG 29 (215)
T ss_pred CCEEEEeeccCCCCCCCCcHHHHHHHccc
Confidence 57899888876654 8999999999954
No 405
>PRK06835 DNA replication protein DnaC; Validated
Probab=39.42 E-value=33 Score=31.28 Aligned_cols=44 Identities=18% Similarity=0.089 Sum_probs=38.2
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCcccccccc
Q 036519 15 AHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLH 58 (365)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~ 58 (365)
..++|...++.|-.+=..++|++|.++|+.|.|++.+.+...+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~ 227 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILR 227 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHH
Confidence 55888888899999999999999999999999999887766554
No 406
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=39.42 E-value=51 Score=32.19 Aligned_cols=33 Identities=6% Similarity=0.219 Sum_probs=25.1
Q ss_pred HHHHHHhcCCCcEEEEcCCCccHHHHHHHhCCceEEE
Q 036519 102 LTELVERMNDVDCIVYDSFLPWALDVAKKFGLTGAAF 138 (365)
Q Consensus 102 l~~ll~~~~~pD~vv~D~~~~~a~~~A~~~giP~v~~ 138 (365)
+.+.+++. +||+||.+. ....+|+++|+|++.+
T Consensus 356 i~~~i~~~-~pdliiG~~---~er~~a~~lgip~~~i 388 (511)
T TIGR01278 356 VADAIAAL-EPELVLGTQ---MERHSAKRLDIPCGVI 388 (511)
T ss_pred HHHHHHhc-CCCEEEECh---HHHHHHHHcCCCEEEe
Confidence 33444455 899999885 4778899999999875
No 407
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=39.11 E-value=57 Score=28.54 Aligned_cols=33 Identities=18% Similarity=0.122 Sum_probs=28.0
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEe
Q 036519 17 CLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVT 49 (365)
Q Consensus 17 il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~ 49 (365)
|.+..=|+-|-..=.+.||..|+++|++|.++=
T Consensus 5 Iav~~KGGVGKTT~~~nLA~~la~~G~kVLliD 37 (270)
T PRK13185 5 LAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQIG 37 (270)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 444444788999999999999999999999883
No 408
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=38.93 E-value=5.1 Score=20.60 Aligned_cols=17 Identities=29% Similarity=0.599 Sum_probs=13.3
Q ss_pred ChhhHHHHHHcCCCeee
Q 036519 268 GWNSTIEALRLGVPMLA 284 (365)
Q Consensus 268 G~gs~~eal~~GvP~v~ 284 (365)
|.|++.-.|+.|.|.++
T Consensus 1 gIGa~Lkvla~~LP~lI 17 (26)
T PF01372_consen 1 GIGAILKVLATGLPTLI 17 (26)
T ss_dssp -HHHHHHHHHTHHHHHH
T ss_pred ChhHHHHHHHhcChHHH
Confidence 67889999999988654
No 409
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=38.93 E-value=42 Score=31.83 Aligned_cols=35 Identities=26% Similarity=0.220 Sum_probs=27.3
Q ss_pred HHHHHHHhcCCCcEEEEcCCCccHHHHHHHhCCceEEEe
Q 036519 101 TLTELVERMNDVDCIVYDSFLPWALDVAKKFGLTGAAFL 139 (365)
Q Consensus 101 ~l~~ll~~~~~pD~vv~D~~~~~a~~~A~~~giP~v~~~ 139 (365)
.+.+++++. +||++|.... ...+|+++|||+..+.
T Consensus 360 e~~~~i~~~-~pDliig~~~---~~~~a~k~giP~~~~~ 394 (421)
T cd01976 360 ELEEFVKRL-KPDLIGSGIK---EKYVFQKMGIPFRQMH 394 (421)
T ss_pred HHHHHHHHh-CCCEEEecCc---chhhhhhcCCCeEeCC
Confidence 345666666 9999998865 6778999999998654
No 410
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=38.47 E-value=77 Score=24.04 Aligned_cols=33 Identities=18% Similarity=0.182 Sum_probs=27.2
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEe
Q 036519 17 CLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVT 49 (365)
Q Consensus 17 il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~ 49 (365)
++++..|..|.-.-+..+++.|+++|+.|..+.
T Consensus 1 ~vv~~HG~~~~~~~~~~~~~~l~~~G~~v~~~~ 33 (145)
T PF12695_consen 1 VVVLLHGWGGSRRDYQPLAEALAEQGYAVVAFD 33 (145)
T ss_dssp EEEEECTTTTTTHHHHHHHHHHHHTTEEEEEES
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 356777777788889999999999999988873
No 411
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=38.46 E-value=1.9e+02 Score=23.67 Aligned_cols=37 Identities=24% Similarity=0.177 Sum_probs=26.1
Q ss_pred HHHHHhcCCCcEEEEc--CCCccHHHHHHHhCCceEEEec
Q 036519 103 TELVERMNDVDCIVYD--SFLPWALDVAKKFGLTGAAFLT 140 (365)
Q Consensus 103 ~~ll~~~~~pD~vv~D--~~~~~a~~~A~~~giP~v~~~~ 140 (365)
.+.+... ++|.|++= --...|..+|.++|+|++...-
T Consensus 46 ~~~~~~~-~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~vRK 84 (179)
T COG0503 46 AERYKDD-GIDKIVTIEARGIPLAAAVALELGVPFVPVRK 84 (179)
T ss_pred HHHhccc-CCCEEEEEccccchhHHHHHHHhCCCEEEEEe
Confidence 3333333 78999943 2234599999999999998654
No 412
>PLN02496 probable phosphopantothenoylcysteine decarboxylase
Probab=38.45 E-value=42 Score=28.32 Aligned_cols=46 Identities=11% Similarity=0.012 Sum_probs=35.6
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCccccccccC
Q 036519 12 SKLAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLHR 59 (365)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~~ 59 (365)
.+.+||++...|+- -..-...|.+.|+ +||+|.++-|+...+++..
T Consensus 17 ~~~k~IllgVtGSI-AAyk~~~lvr~L~-~g~~V~VvmT~~A~~FI~p 62 (209)
T PLN02496 17 PRKPRILLAASGSV-AAIKFGNLCHCFS-EWAEVRAVVTKASLHFIDR 62 (209)
T ss_pred CCCCEEEEEEeCHH-HHHHHHHHHHHhc-CCCeEEEEEChhHhhhcCH
Confidence 34567877776654 4555677999998 5999999999999888874
No 413
>PRK07773 replicative DNA helicase; Validated
Probab=38.44 E-value=1e+02 Score=32.56 Aligned_cols=41 Identities=17% Similarity=0.274 Sum_probs=33.7
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhC-CCeEEEEeCccccccc
Q 036519 17 CLVLSYPAQGHMNPLLQFSKRLEHN-GIKVTLVTTYFISKSL 57 (365)
Q Consensus 17 il~~~~~~~GH~~p~l~la~~L~~~-Gh~Vt~~~~~~~~~~v 57 (365)
|++...|+.|-..=.+.+|...+.+ |..|.|++.+-..+.+
T Consensus 220 ivIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~ql 261 (886)
T PRK07773 220 IIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQL 261 (886)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHHH
Confidence 7778889999999999999988754 8899999887555444
No 414
>PRK07478 short chain dehydrogenase; Provisional
Probab=38.38 E-value=2.2e+02 Score=24.24 Aligned_cols=33 Identities=12% Similarity=0.120 Sum_probs=22.8
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCc
Q 036519 16 HCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTY 51 (365)
Q Consensus 16 ~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~ 51 (365)
+.++++.++ |.+ -.++|++|.++|++|.+.+..
T Consensus 7 k~~lItGas-~gi--G~~ia~~l~~~G~~v~~~~r~ 39 (254)
T PRK07478 7 KVAIITGAS-SGI--GRAAAKLFAREGAKVVVGARR 39 (254)
T ss_pred CEEEEeCCC-ChH--HHHHHHHHHHCCCEEEEEeCC
Confidence 355566554 333 456899999999999887643
No 415
>PRK06194 hypothetical protein; Provisional
Probab=38.24 E-value=1.7e+02 Score=25.60 Aligned_cols=32 Identities=22% Similarity=0.254 Sum_probs=22.0
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 036519 16 HCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTT 50 (365)
Q Consensus 16 ~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~ 50 (365)
+.++++.++ |-+ -.++|++|.++|++|+++..
T Consensus 7 k~vlVtGas-ggI--G~~la~~l~~~G~~V~~~~r 38 (287)
T PRK06194 7 KVAVITGAA-SGF--GLAFARIGAALGMKLVLADV 38 (287)
T ss_pred CEEEEeCCc-cHH--HHHHHHHHHHCCCEEEEEeC
Confidence 344455544 333 56789999999999988764
No 416
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=38.07 E-value=2.1e+02 Score=24.26 Aligned_cols=33 Identities=6% Similarity=0.006 Sum_probs=23.1
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCc
Q 036519 16 HCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTY 51 (365)
Q Consensus 16 ~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~ 51 (365)
|.++++..+. -+ ..++|++|.++|++|+.++..
T Consensus 6 k~vlItGas~-gI--G~~ia~~l~~~G~~vi~~~r~ 38 (248)
T TIGR01832 6 KVALVTGANT-GL--GQGIAVGLAEAGADIVGAGRS 38 (248)
T ss_pred CEEEEECCCc-hH--HHHHHHHHHHCCCEEEEEcCc
Confidence 3445555443 23 678899999999999887653
No 417
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=38.04 E-value=55 Score=31.21 Aligned_cols=36 Identities=25% Similarity=0.196 Sum_probs=31.5
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCcccc
Q 036519 14 LAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFIS 54 (365)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~ 54 (365)
.+||+++-.+..| ++.|+.|+++|++|++.-.....
T Consensus 7 ~~kv~V~GLG~sG-----~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSG-----LAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEeccccc-----HHHHHHHHHCCCeEEEEcCCCCc
Confidence 8899999999999 99999999999999998654443
No 418
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=37.82 E-value=44 Score=30.04 Aligned_cols=34 Identities=18% Similarity=0.148 Sum_probs=27.6
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCc
Q 036519 13 KLAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTY 51 (365)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~ 51 (365)
..|||.|+-.|..| .++|+.|.++||+|++....
T Consensus 3 ~~m~I~iiG~G~~G-----~~lA~~l~~~G~~V~~~~r~ 36 (308)
T PRK14619 3 QPKTIAILGAGAWG-----STLAGLASANGHRVRVWSRR 36 (308)
T ss_pred CCCEEEEECccHHH-----HHHHHHHHHCCCEEEEEeCC
Confidence 35789999777666 47899999999999988754
No 419
>PRK13604 luxD acyl transferase; Provisional
Probab=37.79 E-value=76 Score=28.62 Aligned_cols=36 Identities=17% Similarity=0.250 Sum_probs=29.7
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEE
Q 036519 13 KLAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLV 48 (365)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~ 48 (365)
++...++++.+..++-.-+..+|+.|.++|+.|.-+
T Consensus 35 ~~~~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrf 70 (307)
T PRK13604 35 KKNNTILIASGFARRMDHFAGLAEYLSSNGFHVIRY 70 (307)
T ss_pred CCCCEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEe
Confidence 345677788888888777999999999999988754
No 420
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=37.78 E-value=43 Score=24.62 Aligned_cols=22 Identities=23% Similarity=0.507 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHhCCCeEEEEeC
Q 036519 29 NPLLQFSKRLEHNGIKVTLVTT 50 (365)
Q Consensus 29 ~p~l~la~~L~~~Gh~Vt~~~~ 50 (365)
.|.+.|+++|.++|.+|.+.=+
T Consensus 17 Sp~~~l~~~L~~~g~~V~~~DP 38 (106)
T PF03720_consen 17 SPALELIEELKERGAEVSVYDP 38 (106)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-T
T ss_pred CHHHHHHHHHHHCCCEEEEECC
Confidence 7999999999999999877643
No 421
>PF02635 DrsE: DsrE/DsrF-like family; InterPro: IPR003787 Four small, soluble proteins (DsrE, DsrF, DsrH and DsrC) are encoded in the dsr gene region of the phototrophic sulphur bacterium Chromatium vinosum D. The dsrAB genes encoding dissimilatory sulphite reductase are part of the gene cluster, dsrABEFHCMK. The remaining proteins that are encoded are a transmembrane protein (DsrM) with similarity to haem-b-binding polypeptides and a soluble protein (DsrK) resembling [4Fe-4S]-cluster-containing heterodisulphide reductase from methanogenic archaea. DsrE is a small soluble protein involved in intracellular sulphur reduction [].; PDB: 1L1S_A 2HYB_B 2HY5_B 2PD2_B 3MC3_A 2D1P_H 1JX7_B 2FB6_A.
Probab=37.71 E-value=1.4e+02 Score=21.96 Aligned_cols=44 Identities=11% Similarity=0.015 Sum_probs=31.0
Q ss_pred cEEEEEcC--CCCCC-hHHHHHHHHHHHhCC---CeEEEEeCcccccccc
Q 036519 15 AHCLVLSY--PAQGH-MNPLLQFSKRLEHNG---IKVTLVTTYFISKSLH 58 (365)
Q Consensus 15 ~~il~~~~--~~~GH-~~p~l~la~~L~~~G---h~Vt~~~~~~~~~~v~ 58 (365)
|+|+++.. |.... ..-.+.++..+...| ++|.++...+....+.
T Consensus 1 k~v~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~g~gv~~~~ 50 (122)
T PF02635_consen 1 KKVFFIVTSGPYDDERAKIALRLANAAAAMGDYGHDVVVFFHGDGVKLAL 50 (122)
T ss_dssp EEEEEEE-S-TTTBSHHHHHHHHHHHHHHTTHTTSEEEEEE-GGGGGGGB
T ss_pred CEEEEEecCCCCCCHHHHHHHHHHHHHHHcCCCCCcEEEEEEchHHHHHH
Confidence 45655554 33333 677788888888999 9999998888777766
No 422
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=37.41 E-value=1.9e+02 Score=24.73 Aligned_cols=32 Identities=9% Similarity=0.015 Sum_probs=23.0
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 036519 16 HCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTT 50 (365)
Q Consensus 16 ~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~ 50 (365)
|.++++.++. .=-.++|++|.++|++|..+..
T Consensus 11 k~~lItG~~~---gIG~a~a~~l~~~G~~vv~~~~ 42 (253)
T PRK08993 11 KVAVVTGCDT---GLGQGMALGLAEAGCDIVGINI 42 (253)
T ss_pred CEEEEECCCc---hHHHHHHHHHHHCCCEEEEecC
Confidence 4666666543 3456789999999999987643
No 423
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=37.35 E-value=79 Score=32.00 Aligned_cols=33 Identities=18% Similarity=0.188 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEE-EEeCcc
Q 036519 15 AHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVT-LVTTYF 52 (365)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt-~~~~~~ 52 (365)
|||+|+..|..| .| .-++|.+.||+|. ++|.++
T Consensus 1 mkivf~g~~~~a--~~---~l~~L~~~~~~i~~V~t~pd 34 (660)
T PRK08125 1 MKAVVFAYHDIG--CV---GIEALLAAGYEIAAVFTHTD 34 (660)
T ss_pred CeEEEECCCHHH--HH---HHHHHHHCCCcEEEEEeCCC
Confidence 689998765543 33 3477888999999 455443
No 424
>cd00501 Peptidase_C15 Pyroglutamyl peptidase (PGP) type I, also known as pyrrolidone carboxyl peptidase (pcp) type I: Enzymes responsible for cleaving pyroglutamate (pGlu) from the N-terminal end of specialized proteins. The N-terminal pGlu protects these proteins from proteolysis by other proteases until the pGlu is removed by a PGP. PGPs are cysteine proteases with a Cys-His-Glu/Asp catalytic triad. Type I PGPs are found in a wide variety of prokaryotes and eukaryotes. It is not clear whether the functional form is a monomer, a homodimer, or a homotetramer.
Probab=37.35 E-value=1.7e+02 Score=24.21 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCC--ChHHHHHHHHHHHhC
Q 036519 15 AHCLVLSYPAQG--HMNPLLQFSKRLEHN 41 (365)
Q Consensus 15 ~~il~~~~~~~G--H~~p~l~la~~L~~~ 41 (365)
|+|++..++-++ -.||.-.++++|.+.
T Consensus 1 ~~vLvTGF~PF~~~~~NpS~~~v~~L~~~ 29 (194)
T cd00501 1 KKVLVTGFGPFGGEPVNPSWEAVKELPKL 29 (194)
T ss_pred CEEEEEecCCCCCCCCChHHHHHHhcccc
Confidence 678888776554 479999999999664
No 425
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=36.86 E-value=1.5e+02 Score=25.41 Aligned_cols=33 Identities=12% Similarity=0.064 Sum_probs=21.6
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEe
Q 036519 16 HCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVT 49 (365)
Q Consensus 16 ~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~ 49 (365)
|.++++..+. .-.=-.++|++|.++|++|.+.+
T Consensus 7 k~vlVtGas~-~~giG~~~a~~l~~~G~~vi~~~ 39 (256)
T PRK12859 7 KVAVVTGVSR-LDGIGAAICKELAEAGADIFFTY 39 (256)
T ss_pred cEEEEECCCC-CCChHHHHHHHHHHCCCeEEEEe
Confidence 4555555431 11123889999999999998763
No 426
>PRK10037 cell division protein; Provisional
Probab=36.69 E-value=64 Score=27.91 Aligned_cols=34 Identities=12% Similarity=0.028 Sum_probs=28.5
Q ss_pred EEEEEcC-CCCCChHHHHHHHHHHHhCCCeEEEEe
Q 036519 16 HCLVLSY-PAQGHMNPLLQFSKRLEHNGIKVTLVT 49 (365)
Q Consensus 16 ~il~~~~-~~~GH~~p~l~la~~L~~~Gh~Vt~~~ 49 (365)
.|.|... |+-|-..=...||..|+++|++|.++=
T Consensus 3 ~iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlID 37 (250)
T PRK10037 3 ILGLQGVRGGVGTTSITAALAWSLQMLGENVLVID 37 (250)
T ss_pred EEEEecCCCCccHHHHHHHHHHHHHhcCCcEEEEe
Confidence 3455555 788999999999999999999999983
No 427
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=36.66 E-value=81 Score=26.81 Aligned_cols=38 Identities=8% Similarity=0.044 Sum_probs=26.2
Q ss_pred cEEEEEcCC----CCCChHHHHHHHHHHHhCCCeEEEEeCcc
Q 036519 15 AHCLVLSYP----AQGHMNPLLQFSKRLEHNGIKVTLVTTYF 52 (365)
Q Consensus 15 ~~il~~~~~----~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~ 52 (365)
+||+++..+ ..-...=++.--..|.+.|++|+++++..
T Consensus 2 kkVlills~~~~~dG~e~~E~~~P~~~L~~aG~~V~~aSp~~ 43 (217)
T PRK11780 2 KKIAVILSGCGVYDGSEIHEAVLTLLALDRAGAEAVCFAPDI 43 (217)
T ss_pred CEEEEEEccCCCCCCEehhHHHHHHHHHHHCCCEEEEEeCCC
Confidence 477777641 11244556666788899999999999754
No 428
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=36.64 E-value=70 Score=29.60 Aligned_cols=37 Identities=16% Similarity=0.158 Sum_probs=27.2
Q ss_pred cCCCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 036519 10 ASSKLAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTT 50 (365)
Q Consensus 10 ~~~~~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~ 50 (365)
...++|+|+++ |+.|.+ --.|++.|.++||+|+.+.-
T Consensus 17 ~~~~~~~IlVt--GgtGfI--G~~l~~~L~~~G~~V~~v~r 53 (370)
T PLN02695 17 WPSEKLRICIT--GAGGFI--ASHIARRLKAEGHYIIASDW 53 (370)
T ss_pred CCCCCCEEEEE--CCccHH--HHHHHHHHHhCCCEEEEEEe
Confidence 33456888876 555554 45788999999999998864
No 429
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=36.60 E-value=42 Score=30.22 Aligned_cols=33 Identities=27% Similarity=0.255 Sum_probs=26.5
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCc
Q 036519 14 LAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTY 51 (365)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~ 51 (365)
||||.|+-.|..| ..+|..|.+.||+|+++...
T Consensus 1 mmkI~iiG~G~mG-----~~~a~~L~~~g~~V~~~~r~ 33 (325)
T PRK00094 1 MMKIAVLGAGSWG-----TALAIVLARNGHDVTLWARD 33 (325)
T ss_pred CCEEEEECCCHHH-----HHHHHHHHhCCCEEEEEECC
Confidence 5789999877666 45788899999999988764
No 430
>PRK07856 short chain dehydrogenase; Provisional
Probab=36.42 E-value=2.7e+02 Score=23.70 Aligned_cols=33 Identities=9% Similarity=0.172 Sum_probs=23.3
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCc
Q 036519 16 HCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTY 51 (365)
Q Consensus 16 ~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~ 51 (365)
+.++++.++.| + -.+++++|.++|++|+++...
T Consensus 7 k~~lItGas~g-I--G~~la~~l~~~g~~v~~~~r~ 39 (252)
T PRK07856 7 RVVLVTGGTRG-I--GAGIARAFLAAGATVVVCGRR 39 (252)
T ss_pred CEEEEeCCCch-H--HHHHHHHHHHCCCEEEEEeCC
Confidence 45556665543 2 567889999999999887654
No 431
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=36.40 E-value=36 Score=28.08 Aligned_cols=36 Identities=17% Similarity=0.187 Sum_probs=24.2
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCcccc
Q 036519 15 AHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFIS 54 (365)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~ 54 (365)
|||.++. +.|++- -.|+++...|||+||-+.-....
T Consensus 1 mKIaiIg--AsG~~G--s~i~~EA~~RGHeVTAivRn~~K 36 (211)
T COG2910 1 MKIAIIG--ASGKAG--SRILKEALKRGHEVTAIVRNASK 36 (211)
T ss_pred CeEEEEe--cCchhH--HHHHHHHHhCCCeeEEEEeChHh
Confidence 5666554 344443 35788999999999988755443
No 432
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=36.32 E-value=19 Score=28.97 Aligned_cols=50 Identities=16% Similarity=0.175 Sum_probs=35.0
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCcc--ccccccCCCCCCCCeeEEEcC
Q 036519 14 LAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYF--ISKSLHRDPSSSISIPLETIS 73 (365)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~--~~~~v~~~~~~~~gi~~~~l~ 73 (365)
..+|.++-++++||. .|.-|++.|++|++.--+. ..+..++ .|++..++.
T Consensus 4 ~k~IAViGyGsQG~a-----~AlNLrDSG~~V~Vglr~~s~s~~~A~~-----~Gf~v~~~~ 55 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHA-----HALNLRDSGVNVIVGLREGSASWEKAKA-----DGFEVMSVA 55 (165)
T ss_dssp TSEEEEES-SHHHHH-----HHHHHHHCC-EEEEEE-TTCHHHHHHHH-----TT-ECCEHH
T ss_pred CCEEEEECCChHHHH-----HHHHHHhCCCCEEEEecCCCcCHHHHHH-----CCCeeccHH
Confidence 468999999999986 4778999999999886554 3455555 788876664
No 433
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=36.32 E-value=49 Score=28.07 Aligned_cols=33 Identities=21% Similarity=0.267 Sum_probs=21.6
Q ss_pred CCCcEEEEEcC--CCCCChHHHHHHHHHHHhCCCeEEEEe
Q 036519 12 SKLAHCLVLSY--PAQGHMNPLLQFSKRLEHNGIKVTLVT 49 (365)
Q Consensus 12 ~~~~~il~~~~--~~~GH~~p~l~la~~L~~~Gh~Vt~~~ 49 (365)
..+.+|++... ++.|| +||+++++.|+.|.-..
T Consensus 5 ~~~k~VlItgcs~GGIG~-----ala~ef~~~G~~V~Ata 39 (289)
T KOG1209|consen 5 SQPKKVLITGCSSGGIGY-----ALAKEFARNGYLVYATA 39 (289)
T ss_pred cCCCeEEEeecCCcchhH-----HHHHHHHhCCeEEEEEc
Confidence 33444555443 34454 68999999999987543
No 434
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=36.12 E-value=3.4e+02 Score=25.20 Aligned_cols=34 Identities=29% Similarity=0.323 Sum_probs=25.7
Q ss_pred HHHHHHhcCCCcEEEEcCCCccHHHHHHHhCCceEEEe
Q 036519 102 LTELVERMNDVDCIVYDSFLPWALDVAKKFGLTGAAFL 139 (365)
Q Consensus 102 l~~ll~~~~~pD~vv~D~~~~~a~~~A~~~giP~v~~~ 139 (365)
+.+.+++. +||+++.+.. ....++++|+|++.+.
T Consensus 340 ~~~~~~~~-~pdl~ig~~~---~~~~~~~~~ip~~~~~ 373 (399)
T cd00316 340 LEELIREL-KPDLIIGGSK---GRYIAKKLGIPLVRIG 373 (399)
T ss_pred HHHHHhhc-CCCEEEECCc---HHHHHHHhCCCEEEcC
Confidence 44556666 8999998853 6788889999998644
No 435
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=36.00 E-value=91 Score=26.04 Aligned_cols=40 Identities=15% Similarity=0.252 Sum_probs=31.3
Q ss_pred CCCcEEEEEcC--CCCCChHHHHHHHHHHHh-CCCeEEEEeCc
Q 036519 12 SKLAHCLVLSY--PAQGHMNPLLQFSKRLEH-NGIKVTLVTTY 51 (365)
Q Consensus 12 ~~~~~il~~~~--~~~GH~~p~l~la~~L~~-~Gh~Vt~~~~~ 51 (365)
+++++++.++. ++-|-..=...||..|++ .|++|.++=.+
T Consensus 32 ~~~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D 74 (207)
T TIGR03018 32 KKNNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDAD 74 (207)
T ss_pred CCCCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 34566666654 788999999999999996 69999988544
No 436
>PRK08462 biotin carboxylase; Validated
Probab=35.99 E-value=3.9e+02 Score=25.40 Aligned_cols=36 Identities=8% Similarity=0.073 Sum_probs=26.2
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCcccc
Q 036519 14 LAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFIS 54 (365)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~ 54 (365)
+.|||++-.+.. .+.+.+++++.|++|+.+.+....
T Consensus 4 ~k~ili~~~g~~-----~~~~~~~~~~~G~~~v~~~~~~d~ 39 (445)
T PRK08462 4 IKRILIANRGEI-----ALRAIRTIQEMGKEAIAIYSTADK 39 (445)
T ss_pred CCEEEEECCcHH-----HHHHHHHHHHcCCCEEEEechhhc
Confidence 567887766543 668888888889999888665443
No 437
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=35.94 E-value=57 Score=22.27 Aligned_cols=25 Identities=20% Similarity=0.123 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCccc
Q 036519 29 NPLLQFSKRLEHNGIKVTLVTTYFI 53 (365)
Q Consensus 29 ~p~l~la~~L~~~Gh~Vt~~~~~~~ 53 (365)
.-.+++|..|+++|.+||++...+.
T Consensus 9 ~ig~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 9 FIGIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred HHHHHHHHHHHHhCcEEEEEeccch
Confidence 3468999999999999999876543
No 438
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=35.92 E-value=79 Score=29.43 Aligned_cols=76 Identities=21% Similarity=0.260 Sum_probs=52.2
Q ss_pred hhhhcccccccccccCChhhHHHHHHcCCCeeeccccCchhhHHHHHHhHhcce-eEecCCCCCcccHHHHHHHHHHHhc
Q 036519 252 LGVLAHEATGCFLTHCGWNSTIEALRLGVPMLAMPLWTDQSTNSKYVMDVWKMG-LKVPADEKGIVRREAIAHCIGEILE 330 (365)
Q Consensus 252 ~~~L~~~~~~~~I~hgG~gs~~eal~~GvP~v~~P~~~DQ~~nA~~v~~~~G~G-~~~~~~~~~~~~~~~l~~~i~~ll~ 330 (365)
..++.+|++ +|.--=++.+ -|++.|+|.+.+-+ |+-+....++. |+- ..++.. .++.+.+...+.+.++
T Consensus 280 ~~~l~~~dl--~Vg~R~HsaI-~al~~g~p~i~i~Y---~~K~~~l~~~~-gl~~~~~~i~---~~~~~~l~~~~~e~~~ 349 (385)
T COG2327 280 GGILAACDL--IVGMRLHSAI-MALAFGVPAIAIAY---DPKVRGLMQDL-GLPGFAIDID---PLDAEILSAVVLERLT 349 (385)
T ss_pred HHHhccCce--EEeehhHHHH-HHHhcCCCeEEEee---cHHHHHHHHHc-CCCcccccCC---CCchHHHHHHHHHHHh
Confidence 458889998 7754334444 49999999988865 33444666666 663 445544 7899999999998886
Q ss_pred C-HHHHHH
Q 036519 331 G-DKWRNF 337 (365)
Q Consensus 331 ~-~~~~~~ 337 (365)
+ ++.+++
T Consensus 350 ~~~~~~~~ 357 (385)
T COG2327 350 KLDELRER 357 (385)
T ss_pred ccHHHHhh
Confidence 4 454444
No 439
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=35.88 E-value=53 Score=29.25 Aligned_cols=32 Identities=16% Similarity=0.174 Sum_probs=25.9
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCc
Q 036519 15 AHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTY 51 (365)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~ 51 (365)
+||.|+-.+..| .+.|..|.++||+|++..-.
T Consensus 1 ~kIafIGLG~MG-----~pmA~~L~~aG~~v~v~~r~ 32 (286)
T COG2084 1 MKIAFIGLGIMG-----SPMAANLLKAGHEVTVYNRT 32 (286)
T ss_pred CeEEEEcCchhh-----HHHHHHHHHCCCEEEEEeCC
Confidence 467888777766 57899999999999988643
No 440
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=35.86 E-value=58 Score=26.84 Aligned_cols=39 Identities=21% Similarity=0.175 Sum_probs=24.1
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCc-ccccccc
Q 036519 15 AHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTY-FISKSLH 58 (365)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~-~~~~~v~ 58 (365)
|||.++ +.||+ .+.+|..|+++||+|+.+=.. ...+.+.
T Consensus 1 M~I~Vi---GlGyv--Gl~~A~~lA~~G~~V~g~D~~~~~v~~l~ 40 (185)
T PF03721_consen 1 MKIAVI---GLGYV--GLPLAAALAEKGHQVIGVDIDEEKVEALN 40 (185)
T ss_dssp -EEEEE-----STT--HHHHHHHHHHTTSEEEEE-S-HHHHHHHH
T ss_pred CEEEEE---CCCcc--hHHHHHHHHhCCCEEEEEeCChHHHHHHh
Confidence 677776 44554 478888999999999987543 3334444
No 441
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=35.72 E-value=68 Score=24.09 Aligned_cols=36 Identities=19% Similarity=0.203 Sum_probs=30.4
Q ss_pred CCCChHHHHHHHHHHHhCCCeEEEEeCccccccccC
Q 036519 24 AQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLHR 59 (365)
Q Consensus 24 ~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~~ 59 (365)
..|+-..++..++.++++|..|..+|.....+..+.
T Consensus 62 ~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~~~l~~~ 97 (131)
T PF01380_consen 62 YSGETRELIELLRFAKERGAPVILITSNSESPLARL 97 (131)
T ss_dssp SSSTTHHHHHHHHHHHHTTSEEEEEESSTTSHHHHH
T ss_pred ccccchhhhhhhHHHHhcCCeEEEEeCCCCCchhhh
Confidence 778889999999999999999998887766665553
No 442
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=35.64 E-value=1e+02 Score=27.25 Aligned_cols=40 Identities=15% Similarity=0.229 Sum_probs=34.0
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCccc
Q 036519 14 LAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFI 53 (365)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~ 53 (365)
+..|+|+..++-|-..=...||..|+++|++|.++..+.+
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~ 111 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF 111 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 3456677778999999999999999999999999988754
No 443
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=35.60 E-value=50 Score=22.00 Aligned_cols=21 Identities=24% Similarity=0.218 Sum_probs=17.3
Q ss_pred HHHHHHHHHhCCCeEEEEeCc
Q 036519 31 LLQFSKRLEHNGIKVTLVTTY 51 (365)
Q Consensus 31 ~l~la~~L~~~Gh~Vt~~~~~ 51 (365)
-+..|..|+++|++|+++=..
T Consensus 8 Gl~aA~~L~~~g~~v~v~E~~ 28 (68)
T PF13450_consen 8 GLAAAYYLAKAGYRVTVFEKN 28 (68)
T ss_dssp HHHHHHHHHHTTSEEEEEESS
T ss_pred HHHHHHHHHHCCCcEEEEecC
Confidence 467899999999999998543
No 444
>PRK05246 glutathione synthetase; Provisional
Probab=35.45 E-value=69 Score=28.95 Aligned_cols=43 Identities=7% Similarity=0.006 Sum_probs=32.4
Q ss_pred CcEEEEEcCCC---CCChHHHHHHHHHHHhCCCeEEEEeCcccccc
Q 036519 14 LAHCLVLSYPA---QGHMNPLLQFSKRLEHNGIKVTLVTTYFISKS 56 (365)
Q Consensus 14 ~~~il~~~~~~---~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~ 56 (365)
.|||+|+.-|- --.....+.|+++-+++||+|.++++.+..-.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~st~~l~~aa~~~G~~v~~~~~~dl~~~ 46 (316)
T PRK05246 1 MMKVAFQMDPIESINIKKDSTFAMMLEAQRRGHELFYYEPDDLSLR 46 (316)
T ss_pred CceEEEEeCCHHHCCCCCChHHHHHHHHHHcCCEEEEEehhhcEEE
Confidence 47888888762 23335568899999999999999998876543
No 445
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=35.43 E-value=23 Score=27.71 Aligned_cols=36 Identities=19% Similarity=0.256 Sum_probs=25.8
Q ss_pred HHHHHHHHhCCCeEEEEeCccccccccCCCCCCCCeeEEEc
Q 036519 32 LQFSKRLEHNGIKVTLVTTYFISKSLHRDPSSSISIPLETI 72 (365)
Q Consensus 32 l~la~~L~~~Gh~Vt~~~~~~~~~~v~~~~~~~~gi~~~~l 72 (365)
.-+|..|+++||+|++++.....+.+.+ .++.+...
T Consensus 11 ~~~a~~L~~~g~~V~l~~r~~~~~~~~~-----~g~~~~~~ 46 (151)
T PF02558_consen 11 SLYAARLAQAGHDVTLVSRSPRLEAIKE-----QGLTITGP 46 (151)
T ss_dssp HHHHHHHHHTTCEEEEEESHHHHHHHHH-----HCEEEEET
T ss_pred HHHHHHHHHCCCceEEEEccccHHhhhh-----eeEEEEec
Confidence 3478999999999999998874444554 45555443
No 446
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=35.29 E-value=96 Score=21.36 Aligned_cols=33 Identities=18% Similarity=0.254 Sum_probs=28.2
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEe
Q 036519 17 CLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVT 49 (365)
Q Consensus 17 il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~ 49 (365)
+++...++.|-..-...++..|++.|++|.++.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 455666788999999999999999999998876
No 447
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=35.16 E-value=80 Score=28.01 Aligned_cols=44 Identities=23% Similarity=0.299 Sum_probs=32.2
Q ss_pred hHHHHHHHHHhcCCCcEEEEcCCCcc-----HHHHHHHhCCceEEEecc
Q 036519 98 GVQTLTELVERMNDVDCIVYDSFLPW-----ALDVAKKFGLTGAAFLTQ 141 (365)
Q Consensus 98 ~~~~l~~ll~~~~~pD~vv~D~~~~~-----a~~~A~~~giP~v~~~~~ 141 (365)
+++.++.++.+..++=+||.|.|+=. -..+|.+.+||++.+--.
T Consensus 135 IKE~vR~~I~~A~kVIAIVMD~FTD~dIf~DLleAa~kR~VpVYiLLD~ 183 (284)
T PF07894_consen 135 IKEVVRRMIQQAQKVIAIVMDVFTDVDIFCDLLEAANKRGVPVYILLDE 183 (284)
T ss_pred HHHHHHHHHHHhcceeEEEeeccccHHHHHHHHHHHHhcCCcEEEEech
Confidence 34456666666668889999988743 567888999999986543
No 448
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=35.15 E-value=78 Score=29.62 Aligned_cols=37 Identities=16% Similarity=0.141 Sum_probs=30.3
Q ss_pred CCcEEEEEcC--CCCCChHHHHHHHHHHHhCCCeEEEEe
Q 036519 13 KLAHCLVLSY--PAQGHMNPLLQFSKRLEHNGIKVTLVT 49 (365)
Q Consensus 13 ~~~~il~~~~--~~~GH~~p~l~la~~L~~~Gh~Vt~~~ 49 (365)
++++|+.+.. |+-|-..-.+.||..|+.+|++|.++=
T Consensus 104 ~~~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVLlID 142 (387)
T PHA02519 104 KNPVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLIE 142 (387)
T ss_pred CCceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEEEEe
Confidence 3455644444 799999999999999999999999885
No 449
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=35.14 E-value=2.9e+02 Score=23.68 Aligned_cols=44 Identities=9% Similarity=0.060 Sum_probs=31.4
Q ss_pred hccCCCCcEEEEEcCCCCCChHH---HHHHHHHHHhCCCeEEEEeCc
Q 036519 8 ASASSKLAHCLVLSYPAQGHMNP---LLQFSKRLEHNGIKVTLVTTY 51 (365)
Q Consensus 8 ~~~~~~~~~il~~~~~~~GH~~p---~l~la~~L~~~Gh~Vt~~~~~ 51 (365)
++......--+-++.++.||=.+ -++++..|.....+|.++..+
T Consensus 104 ~Hp~~~~~pgve~stGSLGqGLsvavGmAlg~kl~~~~~~VyvilGD 150 (243)
T COG3959 104 GHPERNKTPGVEVSTGSLGQGLSVAVGMALGAKLKGSPYRVYVILGD 150 (243)
T ss_pred CCCccCCCCceeecCCcccccchHHHHHHHHHhhcCCCceEEEEecC
Confidence 33333333467788999999655 477888888788999988765
No 450
>PF14626 RNase_Zc3h12a_2: Zc3h12a-like Ribonuclease NYN domain
Probab=35.09 E-value=54 Score=24.69 Aligned_cols=32 Identities=9% Similarity=0.164 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHhCCCeEEEEeCccccccccC
Q 036519 28 MNPLLQFSKRLEHNGIKVTLVTTYFISKSLHR 59 (365)
Q Consensus 28 ~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~~ 59 (365)
+.|++.|.-.+.-+||+++++-+..+.+.+..
T Consensus 9 Vk~L~eIll~FilrGHKT~vyLP~yY~~~~~~ 40 (122)
T PF14626_consen 9 VKALVEILLHFILRGHKTVVYLPKYYKNYVDD 40 (122)
T ss_pred HHHHHHHHHHHHhccCeeEEEChHHHhccccc
Confidence 56788888888899999999999988887773
No 451
>TIGR02128 G6PI_arch bifunctional phosphoglucose/phosphomannose isomerase. This bifunctional isomerase is a member of the larger PGI superfamily and only distantly related to other glucose-6-phosphate isomerases. The family is limited to the archaea.
Probab=35.00 E-value=2.5e+02 Score=25.37 Aligned_cols=113 Identities=13% Similarity=0.044 Sum_probs=58.0
Q ss_pred EEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCcccc-ccccCCCCCCCCeeEEEcCCCCCCCCCCCcCCHHHHHHHHHH
Q 036519 18 LVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFIS-KSLHRDPSSSISIPLETISDGYDEGRSAQAETDQAYVDRFWQ 96 (365)
Q Consensus 18 l~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~-~~v~~~~~~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 96 (365)
+++.....|.-.-.+..++..+++|..|..+|..... +...+ .|..++.+|.+.+. ......-+......+..
T Consensus 69 lvI~iS~SG~t~e~~~a~~~A~~~g~~ii~iT~~g~L~~~a~~-----~~~~~i~vP~~~~~-R~s~~~~~~~~l~~l~~ 142 (308)
T TIGR02128 69 LLIAVSYSGNTEETLSAVEEAKKKGAKVIAITSGGRLEEMAKE-----RGLDVIKIPKGLQP-RAAFPYLLTPLILMLIK 142 (308)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHcCCEEEEECCCcHHHHHHHh-----cCCeEEEcCCCCCC-eeeHHHHHHHHHHHHHH
Confidence 4555555667777777888888999998888753322 22222 46778888876654 11100001111122221
Q ss_pred HhHHHHHHHHHhcCCCcEEEEcCCCccHHHHHHHhC--CceEEEe
Q 036519 97 IGVQTLTELVERMNDVDCIVYDSFLPWALDVAKKFG--LTGAAFL 139 (365)
Q Consensus 97 ~~~~~l~~ll~~~~~pD~vv~D~~~~~a~~~A~~~g--iP~v~~~ 139 (365)
.....+......+..|+. +.+.-.|..+|.++. +|++.-.
T Consensus 143 ~~g~d~~~~~~~l~~~~~---~~~~n~Ak~LA~~l~~~~pvi~~~ 184 (308)
T TIGR02128 143 PLGIDIEEAELLEGGLDT---PKLKALAKRLAEEIYNRIPVIYSS 184 (308)
T ss_pred HcCCChHHHHHHhcCCcc---ccccCHHHHHHHHhhCCCCEEEeC
Confidence 111122222222224442 344455777777764 7776644
No 452
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=34.92 E-value=91 Score=25.00 Aligned_cols=38 Identities=21% Similarity=0.267 Sum_probs=33.6
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCcccc
Q 036519 17 CLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFIS 54 (365)
Q Consensus 17 il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~ 54 (365)
+++...++.|-..-...++..|.++|.+|.++..+.+.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~ 40 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYR 40 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Confidence 56778889999999999999999999999999887654
No 453
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=34.84 E-value=48 Score=30.01 Aligned_cols=31 Identities=19% Similarity=0.266 Sum_probs=23.7
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 036519 15 AHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTT 50 (365)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~ 50 (365)
|||+|+..+..+ ++..++|.++||+|..+.+
T Consensus 1 mkIvf~Gs~~~a-----~~~L~~L~~~~~~i~~Vvt 31 (313)
T TIGR00460 1 LRIVFFGTPTFS-----LPVLEELREDNFEVVGVVT 31 (313)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCcEEEEEc
Confidence 789999777654 5666888889999986654
No 454
>PRK09739 hypothetical protein; Provisional
Probab=34.83 E-value=1.1e+02 Score=25.33 Aligned_cols=37 Identities=11% Similarity=0.138 Sum_probs=22.3
Q ss_pred CCcEEEEEcC-CCCCC-hHH-HHHHHHHHHhCCCeEEEEe
Q 036519 13 KLAHCLVLSY-PAQGH-MNP-LLQFSKRLEHNGIKVTLVT 49 (365)
Q Consensus 13 ~~~~il~~~~-~~~GH-~~p-~l~la~~L~~~Gh~Vt~~~ 49 (365)
+||||+++.. |-.+- -.- .=.+++.|.++||+|+++-
T Consensus 2 ~mmkiliI~~sp~~~s~s~~l~~~~~~~~~~~g~~v~~~d 41 (199)
T PRK09739 2 QSMRIYLVWAHPRHDSLTAKVAEAIHQRAQERGHQVEELD 41 (199)
T ss_pred CCceEEEEEcCCCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 3788887755 43322 222 2234666777899998764
No 455
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=34.79 E-value=78 Score=24.29 Aligned_cols=44 Identities=16% Similarity=0.138 Sum_probs=27.1
Q ss_pred cEEEEEcC-CCCCC--hHHHHHHHHHHHhCCCeE-EEEeCcccccccc
Q 036519 15 AHCLVLSY-PAQGH--MNPLLQFSKRLEHNGIKV-TLVTTYFISKSLH 58 (365)
Q Consensus 15 ~~il~~~~-~~~GH--~~p~l~la~~L~~~Gh~V-t~~~~~~~~~~v~ 58 (365)
||++|+.. +-+|+ ..-.+.+|+.+.++||+| .++-..+..-...
T Consensus 1 m~~~iv~~~~Py~~~~~~~al~~A~aa~~~gh~v~~vFf~~DgV~~a~ 48 (128)
T PRK00207 1 MRYAIAVTGPAYGTQQASSAYQFAQALLAEGHELVSVFFYQDGVLNAN 48 (128)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEEehHHHHHHh
Confidence 45544333 33343 466788899999999984 6665555554443
No 456
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=34.72 E-value=1.1e+02 Score=29.85 Aligned_cols=35 Identities=20% Similarity=0.167 Sum_probs=26.3
Q ss_pred CCChH---HHHHHHHHHHhCCCeEEEEeCccccccccC
Q 036519 25 QGHMN---PLLQFSKRLEHNGIKVTLVTTYFISKSLHR 59 (365)
Q Consensus 25 ~GH~~---p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~~ 59 (365)
.||+. ..-.+++.|+.+|++|.|+++.+..+.+++
T Consensus 39 iG~~~e~~~~d~v~r~lr~~G~~v~~i~~~Dd~d~lRk 76 (510)
T PRK00750 39 IGNFREVARTDMVRRALRDLGIKTRLIFFSDDMDGLRK 76 (510)
T ss_pred cccccchhhHHHHHHHHHHcCCcEEEEEEEecCCcccc
Confidence 36654 455679999999999999988776665544
No 457
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=34.67 E-value=1.2e+02 Score=26.37 Aligned_cols=103 Identities=10% Similarity=0.033 Sum_probs=52.6
Q ss_pred HHHHHHHHHhCC-CeEEEEeCccccccccCCCCCCCCeeEEEcCCCCCCCCCCCcCCHHHHHHHHHHHhHHHHHHHHHhc
Q 036519 31 LLQFSKRLEHNG-IKVTLVTTYFISKSLHRDPSSSISIPLETISDGYDEGRSAQAETDQAYVDRFWQIGVQTLTELVERM 109 (365)
Q Consensus 31 ~l~la~~L~~~G-h~Vt~~~~~~~~~~v~~~~~~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~ 109 (365)
+=+.++.|.+.+ .+|.+.++....+...+.......+-+..+|..-...+. .....+..--....+.=.+++++.
T Consensus 118 ~~eA~~~l~~~~~~~iflttGsk~L~~f~~~~~~~~r~~~RvLp~~~~~~g~----~~~~iia~~GPfs~e~n~al~~~~ 193 (249)
T PF02571_consen 118 YEEAAELLKELGGGRIFLTTGSKNLPPFVPAPLPGERLFARVLPTPESALGF----PPKNIIAMQGPFSKELNRALFRQY 193 (249)
T ss_pred HHHHHHHHhhcCCCCEEEeCchhhHHHHhhcccCCCEEEEEECCCccccCCC----ChhhEEEEeCCCCHHHHHHHHHHc
Confidence 345566666666 566665555554444210112234555556521111010 111111111111222346788888
Q ss_pred CCCcEEEEcCCCcc----HHHHHHHhCCceEEE
Q 036519 110 NDVDCIVYDSFLPW----ALDVAKKFGLTGAAF 138 (365)
Q Consensus 110 ~~pD~vv~D~~~~~----a~~~A~~~giP~v~~ 138 (365)
++|+||+-..... =..+|+.+|||++.+
T Consensus 194 -~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI 225 (249)
T PF02571_consen 194 -GIDVLVTKESGGSGFDEKIEAARELGIPVIVI 225 (249)
T ss_pred -CCCEEEEcCCCchhhHHHHHHHHHcCCeEEEE
Confidence 9999998743322 268999999999985
No 458
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=34.52 E-value=93 Score=25.42 Aligned_cols=105 Identities=15% Similarity=0.140 Sum_probs=53.4
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCe--EEEE-eCccccccccCCCCCCCCeeEEEcCC-CCCCCCCCCcCCHHHH
Q 036519 15 AHCLVLSYPAQGHMNPLLQFSKRLEHNGIK--VTLV-TTYFISKSLHRDPSSSISIPLETISD-GYDEGRSAQAETDQAY 90 (365)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~la~~L~~~Gh~--Vt~~-~~~~~~~~v~~~~~~~~gi~~~~l~~-~~~~~~~~~~~~~~~~ 90 (365)
|||+|+..++. .-+..+.++|.++++. +..+ +.++...-..+ ....++....+.. ++..
T Consensus 1 mrI~~~~Sg~~---~~~~~~l~~l~~~~~~~~iv~Vit~~~~~~~~~~--~~~~~~~~~~~~~~~~~~------------ 63 (181)
T PF00551_consen 1 MRIVFFGSGSG---SFLKALLEALKARGHNVEIVLVITNPDKPRGRSR--AIKNGIPAQVADEKNFQP------------ 63 (181)
T ss_dssp EEEEEEESSSS---HHHHHHHHHHHTTSSEEEEEEEEESSTTTHHHHH--HHHTTHHEEEHHGGGSSS------------
T ss_pred CEEEEEEcCCC---HHHHHHHHHHHhCCCCceEEEEeccccccccccc--cccCCCCEEeccccCCCc------------
Confidence 78999977665 4456667889999987 5444 33333221110 0003344333321 0000
Q ss_pred HHHHHHHhHHHHHHHHHhcCCCcEEEEcCCCc-cHHHHHHHhCCceEEEecc
Q 036519 91 VDRFWQIGVQTLTELVERMNDVDCIVYDSFLP-WALDVAKKFGLTGAAFLTQ 141 (365)
Q Consensus 91 ~~~~~~~~~~~l~~ll~~~~~pD~vv~D~~~~-~a~~~A~~~giP~v~~~~~ 141 (365)
.......+.+.+++. +||++|+-.+.. .-..+-+.....++-+.++
T Consensus 64 ----~~~~~~~~~~~l~~~-~~Dl~v~~~~~~il~~~~l~~~~~~~iNiHps 110 (181)
T PF00551_consen 64 ----RSENDEELLELLESL-NPDLIVVAGYGRILPKEFLSIPPYGIINIHPS 110 (181)
T ss_dssp ----HHHHHHHHHHHHHHT-T-SEEEESS-SS---HHHHHHSTTSEEEEESS
T ss_pred ----hHhhhhHHHHHHHhh-ccceeehhhhHHHhhhhhhhcccccEEEEeec
Confidence 112233466777888 999999775432 2333445555555555554
No 459
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=34.46 E-value=3.2e+02 Score=23.98 Aligned_cols=57 Identities=14% Similarity=0.134 Sum_probs=38.7
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCccccccccCCCCCCCCeeEEEcCCCCC
Q 036519 14 LAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLHRDPSSSISIPLETISDGYD 77 (365)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~~~~~~~~gi~~~~l~~~~~ 77 (365)
+|||+++..|+...-. ..++.|.+.|+++.++......+... ....+..+-+|-++.
T Consensus 3 ~~kvaVl~~pG~n~d~---e~~~Al~~aG~~v~~v~~~~~~~~~~----~l~~~DgLvipGGfs 59 (261)
T PRK01175 3 SIRVAVLRMEGTNCED---ETVKAFRRLGVEPEYVHINDLAAERK----SVSDYDCLVIPGGFS 59 (261)
T ss_pred CCEEEEEeCCCCCCHH---HHHHHHHHCCCcEEEEeecccccccc----chhhCCEEEECCCCC
Confidence 5789999998887554 55788989999999887643221111 113577777776643
No 460
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=34.43 E-value=74 Score=27.43 Aligned_cols=42 Identities=17% Similarity=0.048 Sum_probs=26.6
Q ss_pred cCCCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCc
Q 036519 10 ASSKLAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTY 51 (365)
Q Consensus 10 ~~~~~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~ 51 (365)
....+++|+++..--.-=..-+=+....|.++|++|++++-.
T Consensus 6 ~~~~~~~vL~v~aHPDDe~~g~ggtla~~~~~G~~V~v~~lT 47 (237)
T COG2120 6 PMLDPLRVLVVFAHPDDEEIGCGGTLAKLAARGVEVTVVCLT 47 (237)
T ss_pred ccccCCcEEEEecCCcchhhccHHHHHHHHHCCCeEEEEEcc
Confidence 344567776665433333344556667778999999987644
No 461
>PRK06756 flavodoxin; Provisional
Probab=34.34 E-value=85 Score=24.51 Aligned_cols=37 Identities=3% Similarity=0.202 Sum_probs=29.7
Q ss_pred CcEEEEEcCCCCCChHHHHH-HHHHHHhCCCeEEEEeC
Q 036519 14 LAHCLVLSYPAQGHMNPLLQ-FSKRLEHNGIKVTLVTT 50 (365)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~-la~~L~~~Gh~Vt~~~~ 50 (365)
||+|+++-...+||..-+-. |++.|.+.|++|.+...
T Consensus 1 mmkv~IiY~S~tGnTe~vA~~ia~~l~~~g~~v~~~~~ 38 (148)
T PRK06756 1 MSKLVMIFASMSGNTEEMADHIAGVIRETENEIEVIDI 38 (148)
T ss_pred CceEEEEEECCCchHHHHHHHHHHHHhhcCCeEEEeeh
Confidence 57888888889999988654 58888889999887643
No 462
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=34.22 E-value=2.7e+02 Score=23.14 Aligned_cols=103 Identities=13% Similarity=0.188 Sum_probs=59.2
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeC---c--cccccccCCCCCCCCeeEEEcCCCCCCCCCCCcCC
Q 036519 12 SKLAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTT---Y--FISKSLHRDPSSSISIPLETISDGYDEGRSAQAET 86 (365)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~---~--~~~~~v~~~~~~~~gi~~~~l~~~~~~~~~~~~~~ 86 (365)
.++--|.+++..+-|-....+.+|-+-.-+|.+|.++-. . ..+..... .. ..+++|+.+++++.- +.. +
T Consensus 26 ~~~Gli~V~TG~GKGKTTAAlG~alRa~GhG~rv~vvQFiKg~~~~GE~~~~~-~~-~~~v~~~~~~~g~tw---~~~-~ 99 (198)
T COG2109 26 EEKGLIIVFTGNGKGKTTAALGLALRALGHGLRVGVVQFIKGGWKYGEEAALE-KF-GLGVEFHGMGEGFTW---ETQ-D 99 (198)
T ss_pred cccCeEEEEecCCCChhHHHHHHHHHHhcCCCEEEEEEEeecCcchhHHHHHH-hh-ccceeEEecCCceeC---CCc-C
Confidence 333348889999999999999998777778888887632 1 22222211 01 146888888866553 111 1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhcCCCcEEEEcCCCc
Q 036519 87 DQAYVDRFWQIGVQTLTELVERMNDVDCIVYDSFLP 122 (365)
Q Consensus 87 ~~~~~~~~~~~~~~~l~~ll~~~~~pD~vv~D~~~~ 122 (365)
...-. .......+.-...+.+- +.|+||.|-+++
T Consensus 100 ~~~d~-~aa~~~w~~a~~~l~~~-~ydlviLDEl~~ 133 (198)
T COG2109 100 READI-AAAKAGWEHAKEALADG-KYDLVILDELNY 133 (198)
T ss_pred cHHHH-HHHHHHHHHHHHHHhCC-CCCEEEEehhhH
Confidence 11111 11222222233444444 889999996654
No 463
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=34.22 E-value=1.1e+02 Score=26.50 Aligned_cols=46 Identities=13% Similarity=0.197 Sum_probs=34.1
Q ss_pred cHHHHHHHHHHHhcC-HHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcc
Q 036519 317 RREAIAHCIGEILEG-DKWRNFAKEAVAKGGSSDKNIDDFVANLISSK 363 (365)
Q Consensus 317 ~~~~l~~~i~~ll~~-~~~~~~a~~~~~~~g~s~~~~~~~~~~i~~~~ 363 (365)
+-..|+++.+.+... ..++|++++..++.+ ....+.+|+++|.+.+
T Consensus 209 ~i~alr~ayk~lfr~~~~~~e~~~~i~~~~~-~~~~v~~~~dFi~~s~ 255 (260)
T COG1043 209 EIHALRKAYKLLFRSGLTLREALEEIAEEYA-DNPEVKEFIDFIASSS 255 (260)
T ss_pred HHHHHHHHHHHHeeCCCCHHHHHHHHHHHhc-CChHHHHHHHHHhhcc
Confidence 334456777777754 489999999877765 4558999999998764
No 464
>PRK08939 primosomal protein DnaI; Reviewed
Probab=34.10 E-value=51 Score=29.73 Aligned_cols=45 Identities=16% Similarity=0.156 Sum_probs=39.1
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCcccccccc
Q 036519 14 LAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLH 58 (365)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~ 58 (365)
...+++...++.|-.+=+.++|.+|.++|..|+|+..+.+...+.
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk 200 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELK 200 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHH
Confidence 456888888999999999999999999999999999887766655
No 465
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=34.10 E-value=2.4e+02 Score=26.28 Aligned_cols=92 Identities=22% Similarity=0.164 Sum_probs=50.6
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCcccccccc-CC-CCCCCC-eeEEEcCCCCCCCCCCCcCCHHHH
Q 036519 14 LAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLH-RD-PSSSIS-IPLETISDGYDEGRSAQAETDQAY 90 (365)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~-~~-~~~~~g-i~~~~l~~~~~~~~~~~~~~~~~~ 90 (365)
..++++. |+-...+.|++.|.+-|.+|..+......+.-. +. ...... ..+ + ...+
T Consensus 271 g~~v~i~-----~~~~~~~~l~~~L~elG~~v~~v~~~~~~~~~~e~~~~~~~~~~~~v--~----------~~~~---- 329 (398)
T PF00148_consen 271 GKRVAIY-----GDPDRALGLARFLEELGMEVVAVGCDDKSPEDEERLRWLLEESDPEV--I----------IDPD---- 329 (398)
T ss_dssp T-EEEEE-----SSHHHHHHHHHHHHHTT-EEEEEEESSGGHHHHHHHHHHHHTTCSEE--E----------ESCB----
T ss_pred CceEEEE-----cCchhHHHHHHHHHHcCCeEEEEEEccCchhHHHHHHHHhhCCCcEE--E----------eCCC----
Confidence 3567663 344777899999999999999887654432211 00 000000 000 0 0011
Q ss_pred HHHHHHHhHHHHHHHHHhcCCCcEEEEcCCCccHHHHHHHhCCceEEE
Q 036519 91 VDRFWQIGVQTLTELVERMNDVDCIVYDSFLPWALDVAKKFGLTGAAF 138 (365)
Q Consensus 91 ~~~~~~~~~~~l~~ll~~~~~pD~vv~D~~~~~a~~~A~~~giP~v~~ 138 (365)
...+.+++++. +||+++.+.. ...+|+++++|++..
T Consensus 330 --------~~~~~~~l~~~-~pdl~ig~~~---~~~~a~~~~~~~~~~ 365 (398)
T PF00148_consen 330 --------PEEIEELLEEL-KPDLLIGSSH---ERYLAKKLGIPLIRI 365 (398)
T ss_dssp --------HHHHHHHHHHH-T-SEEEESHH---HHHHHHHTT--EEE-
T ss_pred --------HHHHHHHHHhc-CCCEEEechh---hHHHHHHhCCCeEEE
Confidence 12356777777 9999998843 788899998888764
No 466
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=34.05 E-value=1.1e+02 Score=28.78 Aligned_cols=29 Identities=17% Similarity=0.277 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhC-CCeEEEE
Q 036519 15 AHCLVLSYPAQGHMNPLLQFSKRLEHN-GIKVTLV 48 (365)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~la~~L~~~-Gh~Vt~~ 48 (365)
|||+++..++..| +|++.|++. |+.+.++
T Consensus 1 ~kvliiG~G~~~~-----~l~~~l~~~~~~~~i~~ 30 (420)
T PRK00885 1 MKVLVIGSGGREH-----ALAWKLAQSPLVEKVYV 30 (420)
T ss_pred CEEEEECCCHHHH-----HHHHHHHhCCCCCEEEE
Confidence 7899999987766 599999885 5444444
No 467
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=33.94 E-value=1.5e+02 Score=27.20 Aligned_cols=32 Identities=28% Similarity=0.377 Sum_probs=25.4
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCCC-eEEEEeC
Q 036519 14 LAHCLVLSYPAQGHMNPLLQFSKRLEHNGI-KVTLVTT 50 (365)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~la~~L~~~Gh-~Vt~~~~ 50 (365)
..||+++-.++.| -.+|+.|++.|+ +++++=.
T Consensus 24 ~~~VlIiG~GglG-----s~va~~La~aGvg~i~lvD~ 56 (338)
T PRK12475 24 EKHVLIVGAGALG-----AANAEALVRAGIGKLTIADR 56 (338)
T ss_pred CCcEEEECCCHHH-----HHHHHHHHHcCCCEEEEEcC
Confidence 5689999988877 678999999998 6666533
No 468
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=33.94 E-value=2.7e+02 Score=29.52 Aligned_cols=95 Identities=15% Similarity=0.119 Sum_probs=57.0
Q ss_pred hhhccccccccccc---CChhhHH-HHHHcCC---CeeeccccCchhhHHHHHHhHhc-ceeEecCCCCCcccHHHHHHH
Q 036519 253 GVLAHEATGCFLTH---CGWNSTI-EALRLGV---PMLAMPLWTDQSTNSKYVMDVWK-MGLKVPADEKGIVRREAIAHC 324 (365)
Q Consensus 253 ~~L~~~~~~~~I~h---gG~gs~~-eal~~Gv---P~v~~P~~~DQ~~nA~~v~~~~G-~G~~~~~~~~~~~~~~~l~~~ 324 (365)
.++..+|+ ++.- -|+|.+. |+++++. -.++++-+ +-..+.+ | -|+.++ -.+.++++++
T Consensus 455 AlY~~ADV--~lvTslrDGmNLva~Eyva~~~~~~GvLILSEf------aGaa~~L-~~~AllVN-----P~D~~~vA~A 520 (934)
T PLN03064 455 ALYAVTDV--ALVTSLRDGMNLVSYEFVACQDSKKGVLILSEF------AGAAQSL-GAGAILVN-----PWNITEVAAS 520 (934)
T ss_pred HHHHhCCE--EEeCccccccCchHHHHHHhhcCCCCCeEEeCC------CchHHHh-CCceEEEC-----CCCHHHHHHH
Confidence 57788888 6654 4887665 9999954 22223321 2222223 4 467778 4689999999
Q ss_pred HHHHhc-CHHHHHHH-HHHHHc--CCCcHHHHHHHHHHHHh
Q 036519 325 IGEILE-GDKWRNFA-KEAVAK--GGSSDKNIDDFVANLIS 361 (365)
Q Consensus 325 i~~ll~-~~~~~~~a-~~~~~~--~g~s~~~~~~~~~~i~~ 361 (365)
|.++|+ +++-|+.. +++.+. .-+...=++.|++.+.+
T Consensus 521 I~~AL~M~~~Er~~r~~~~~~~V~~~d~~~Wa~~fl~~L~~ 561 (934)
T PLN03064 521 IAQALNMPEEEREKRHRHNFMHVTTHTAQEWAETFVSELND 561 (934)
T ss_pred HHHHHhCCHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHH
Confidence 999997 55433333 333222 23455556777766654
No 469
>COG0452 Dfp Phosphopantothenoylcysteine synthetase/decarboxylase [Coenzyme metabolism]
Probab=33.93 E-value=53 Score=30.77 Aligned_cols=43 Identities=16% Similarity=0.118 Sum_probs=36.2
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCccccccccC
Q 036519 16 HCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLHR 59 (365)
Q Consensus 16 ~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~~ 59 (365)
||++...++-. ....+.+++.|.++|++|.++-++....++..
T Consensus 6 ~ill~v~gsia-ayk~~~l~r~L~~~ga~v~vvmt~~a~~fv~p 48 (392)
T COG0452 6 RILLGVTGSIA-AYKSVELVRLLRRSGAEVRVVMTESARKFITP 48 (392)
T ss_pred eEEEEecCchh-hhhHHHHHHHHhhCCCeeEEEcchhhhhhcCc
Confidence 78777776654 45669999999999999999999998888875
No 470
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=33.89 E-value=3.3e+02 Score=26.81 Aligned_cols=97 Identities=16% Similarity=0.152 Sum_probs=0.0
Q ss_pred CChHHHHHHH-HHHHhCCCeEEEEeCccccccccCCCCCCCCeeEEEcCCCCCCCCCCCcCCHHHHHHHH----------
Q 036519 26 GHMNPLLQFS-KRLEHNGIKVTLVTTYFISKSLHRDPSSSISIPLETISDGYDEGRSAQAETDQAYVDRF---------- 94 (365)
Q Consensus 26 GH~~p~l~la-~~L~~~Gh~Vt~~~~~~~~~~v~~~~~~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~---------- 94 (365)
|++.=.+.+| +++.+.|++|.+.-+....-.-+. -.++++.++ -+..|+...+...
T Consensus 37 ~~~~~~~~~a~~~~~~~~~dviIsrG~ta~~i~~~-----~~iPVv~i~--------~s~~Dil~al~~a~~~~~~ia~v 103 (526)
T TIGR02329 37 LGFEDAVREIRQRLGAERCDVVVAGGSNGAYLKSR-----LSLPVIVIK--------PTGFDVMQALARARRIASSIGVV 103 (526)
T ss_pred ccHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHh-----CCCCEEEec--------CChhhHHHHHHHHHhcCCcEEEE
Q ss_pred ---------------------------HHHhHHHHHHHHHhcCCCcEEEEcCCCccHHHHHHHhCCceEEEec
Q 036519 95 ---------------------------WQIGVQTLTELVERMNDVDCIVYDSFLPWALDVAKKFGLTGAAFLT 140 (365)
Q Consensus 95 ---------------------------~~~~~~~l~~ll~~~~~pD~vv~D~~~~~a~~~A~~~giP~v~~~~ 140 (365)
.......+.++.+. ..++||.|.. +..+|+++|++.+....
T Consensus 104 g~~~~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~~~~l~~~--G~~~viG~~~---~~~~A~~~gl~~ili~s 171 (526)
T TIGR02329 104 THQDTPPALRRFQAAFNLDIVQRSYVTEEDARSCVNDLRAR--GIGAVVGAGL---ITDLAEQAGLHGVFLYS 171 (526)
T ss_pred ecCcccHHHHHHHHHhCCceEEEEecCHHHHHHHHHHHHHC--CCCEEECChH---HHHHHHHcCCceEEEec
No 471
>PRK08181 transposase; Validated
Probab=33.80 E-value=47 Score=29.32 Aligned_cols=45 Identities=22% Similarity=0.241 Sum_probs=36.4
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCcccccccc
Q 036519 14 LAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLH 58 (365)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~ 58 (365)
.-+++|+..++.|-.+=..++|.++.++|+.|.|++.+.....+.
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~ 150 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQ 150 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHH
Confidence 446888888999999888999999999999999988766555443
No 472
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=33.76 E-value=1e+02 Score=26.50 Aligned_cols=34 Identities=18% Similarity=0.154 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 036519 13 KLAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTT 50 (365)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~ 50 (365)
.+|+|+++.. .| .--..++++|.++||+|+.++-
T Consensus 16 ~~~~ilItGa--sG--~iG~~l~~~L~~~g~~V~~~~R 49 (251)
T PLN00141 16 KTKTVFVAGA--TG--RTGKRIVEQLLAKGFAVKAGVR 49 (251)
T ss_pred cCCeEEEECC--Cc--HHHHHHHHHHHhCCCEEEEEec
Confidence 3567766653 23 2345788889999999987653
No 473
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=33.70 E-value=59 Score=30.67 Aligned_cols=31 Identities=26% Similarity=0.229 Sum_probs=24.7
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 036519 15 AHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTT 50 (365)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~ 50 (365)
|+|.|+-.|..| +.+|..|+++||+|+.+-.
T Consensus 1 mkI~vIGlG~~G-----~~lA~~La~~G~~V~~~d~ 31 (411)
T TIGR03026 1 MKIAVIGLGYVG-----LPLAALLADLGHEVTGVDI 31 (411)
T ss_pred CEEEEECCCchh-----HHHHHHHHhcCCeEEEEEC
Confidence 578888766666 6889999999999988754
No 474
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=33.53 E-value=1.2e+02 Score=24.44 Aligned_cols=42 Identities=19% Similarity=0.073 Sum_probs=30.8
Q ss_pred HHHHHHHHhcCCCcEEEEcCCCc---cHHHHHHHhCCceEEEeccc
Q 036519 100 QTLTELVERMNDVDCIVYDSFLP---WALDVAKKFGLTGAAFLTQS 142 (365)
Q Consensus 100 ~~l~~ll~~~~~pD~vv~D~~~~---~a~~~A~~~giP~v~~~~~~ 142 (365)
..+.+++++. +||+|+.-.... .+..+|.++|.|++.-.+.-
T Consensus 73 ~al~~~i~~~-~p~~Vl~~~t~~g~~la~rlAa~L~~~~vtdv~~l 117 (168)
T cd01715 73 PALVALAKKE-KPSHILAGATSFGKDLAPRVAAKLDVGLISDVTAL 117 (168)
T ss_pred HHHHHHHHhc-CCCEEEECCCccccchHHHHHHHhCCCceeeEEEE
Confidence 3456666666 899999774433 38899999999999755543
No 475
>PRK03094 hypothetical protein; Provisional
Probab=33.38 E-value=41 Score=23.43 Aligned_cols=20 Identities=15% Similarity=0.290 Sum_probs=16.1
Q ss_pred HHHHHHHHhCCCeEEEEeCc
Q 036519 32 LQFSKRLEHNGIKVTLVTTY 51 (365)
Q Consensus 32 l~la~~L~~~Gh~Vt~~~~~ 51 (365)
-.|.+.|+++||+|.=+.++
T Consensus 11 s~i~~~L~~~GYeVv~l~~~ 30 (80)
T PRK03094 11 TDVQQALKQKGYEVVQLRSE 30 (80)
T ss_pred HHHHHHHHHCCCEEEecCcc
Confidence 46899999999999866543
No 476
>PRK12829 short chain dehydrogenase; Provisional
Probab=33.34 E-value=1e+02 Score=26.52 Aligned_cols=40 Identities=10% Similarity=0.052 Sum_probs=26.5
Q ss_pred hccCCCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCc
Q 036519 8 ASASSKLAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTY 51 (365)
Q Consensus 8 ~~~~~~~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~ 51 (365)
|....+.+++++. ++.|.+ ...+++.|.++||+|+.+.-.
T Consensus 5 ~~~~~~~~~vlIt--Ga~g~i--G~~~a~~L~~~g~~V~~~~r~ 44 (264)
T PRK12829 5 LLKPLDGLRVLVT--GGASGI--GRAIAEAFAEAGARVHVCDVS 44 (264)
T ss_pred HhhccCCCEEEEe--CCCCcH--HHHHHHHHHHCCCEEEEEeCC
Confidence 3333455566554 334555 467899999999998877653
No 477
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=33.23 E-value=85 Score=27.81 Aligned_cols=36 Identities=17% Similarity=0.217 Sum_probs=28.1
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCcc
Q 036519 15 AHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYF 52 (365)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~ 52 (365)
-+++++..+. =+.|++.++++|.++|++|+++-...
T Consensus 99 ~~~llIaGGi--GiaPl~~l~~~l~~~~~~v~l~~g~r 134 (281)
T PRK06222 99 GTVVCVGGGV--GIAPVYPIAKALKEAGNKVITIIGAR 134 (281)
T ss_pred CeEEEEeCcC--cHHHHHHHHHHHHHCCCeEEEEEecC
Confidence 3677777554 38999999999999999999775443
No 478
>PRK10125 putative glycosyl transferase; Provisional
Probab=33.19 E-value=72 Score=30.00 Aligned_cols=39 Identities=18% Similarity=0.241 Sum_probs=28.7
Q ss_pred cEEEEEc--CCCCCChHHHHHHHHHHHhCCCeEEEEeCccc
Q 036519 15 AHCLVLS--YPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFI 53 (365)
Q Consensus 15 ~~il~~~--~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~ 53 (365)
||||.+- .+..|-=.=++.|++.|.++||+|.++.....
T Consensus 1 mkil~i~~~l~~GGaeri~~~L~~~l~~~G~~~~i~~~~~~ 41 (405)
T PRK10125 1 MNILQFNVRLAEGGAAGVALDLHQRALQQGLASHFVYGYGK 41 (405)
T ss_pred CeEEEEEeeecCCchhHHHHHHHHHHHhcCCeEEEEEecCC
Confidence 6776554 34455555678999999999999998876533
No 479
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=32.87 E-value=1.3e+02 Score=21.74 Aligned_cols=39 Identities=15% Similarity=0.169 Sum_probs=24.5
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCc
Q 036519 13 KLAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTY 51 (365)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~ 51 (365)
++.||+++|..+.+=-.-.-.+=+.+.++|.++.+-..+
T Consensus 2 ~~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~~ 40 (95)
T TIGR00853 2 NETNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAGS 40 (95)
T ss_pred CccEEEEECCCchhHHHHHHHHHHHHHHCCCcEEEEEec
Confidence 467999999988773332233444445578877665443
No 480
>CHL00175 minD septum-site determining protein; Validated
Probab=32.69 E-value=96 Score=27.33 Aligned_cols=39 Identities=13% Similarity=0.289 Sum_probs=31.4
Q ss_pred CCcEEEEEcC--CCCCChHHHHHHHHHHHhCCCeEEEEeCc
Q 036519 13 KLAHCLVLSY--PAQGHMNPLLQFSKRLEHNGIKVTLVTTY 51 (365)
Q Consensus 13 ~~~~il~~~~--~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~ 51 (365)
++++|+.+.. |+-|-..=...||..|+++|++|.++=.+
T Consensus 13 ~~~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD~D 53 (281)
T CHL00175 13 TMSRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDAD 53 (281)
T ss_pred CCceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 3556665555 68899999999999999999999988443
No 481
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=32.56 E-value=55 Score=29.68 Aligned_cols=33 Identities=21% Similarity=0.143 Sum_probs=27.5
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCc
Q 036519 14 LAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTY 51 (365)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~ 51 (365)
+|||.|+-.|..| ..+|..|.++||+|+++...
T Consensus 4 ~m~I~iIG~G~mG-----~~ia~~L~~~G~~V~~~~r~ 36 (328)
T PRK14618 4 GMRVAVLGAGAWG-----TALAVLAASKGVPVRLWARR 36 (328)
T ss_pred CCeEEEECcCHHH-----HHHHHHHHHCCCeEEEEeCC
Confidence 5789999887777 56888999999999998764
No 482
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=32.55 E-value=69 Score=29.20 Aligned_cols=101 Identities=13% Similarity=0.149 Sum_probs=59.6
Q ss_pred CcEEEEEcCCCCC-----ChHHHHHHHHHHHhCCCeEEEEeCccccccccCCCCCCCCeeEEEcCCCCCCCCCCCcCCHH
Q 036519 14 LAHCLVLSYPAQG-----HMNPLLQFSKRLEHNGIKVTLVTTYFISKSLHRDPSSSISIPLETISDGYDEGRSAQAETDQ 88 (365)
Q Consensus 14 ~~~il~~~~~~~G-----H~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~~~~~~~~gi~~~~l~~~~~~~~~~~~~~~~ 88 (365)
...|+|.++.+.| -..-+-+|++.|.++|.+|.+++++.-.+.+++. . .++..... +. ....+.
T Consensus 175 ~~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g~~~e~e~~~~i-~--~~~~~~~~---l~-----~k~sL~ 243 (334)
T COG0859 175 RPYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFGGPDEEERAEEI-A--KGLPNAVI---LA-----GKTSLE 243 (334)
T ss_pred CCeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEecChHHHHHHHHH-H--HhcCCccc---cC-----CCCCHH
Confidence 3556776662332 3456889999999999999999988554544320 0 01110000 11 111111
Q ss_pred HHHHHHHHHhHHHHHHHHHhcCCCcEEEEcCCCccHHHHHHHhCCceEEEeccc
Q 036519 89 AYVDRFWQIGVQTLTELVERMNDVDCIVYDSFLPWALDVAKKFGLTGAAFLTQS 142 (365)
Q Consensus 89 ~~~~~~~~~~~~~l~~ll~~~~~pD~vv~D~~~~~a~~~A~~~giP~v~~~~~~ 142 (365)
.+..++. ..|++|+- -.....+|.-+|.|+|.++..+
T Consensus 244 ------------e~~~li~---~a~l~I~~--DSg~~HlAaA~~~P~I~iyg~t 280 (334)
T COG0859 244 ------------ELAALIA---GADLVIGN--DSGPMHLAAALGTPTIALYGPT 280 (334)
T ss_pred ------------HHHHHHh---cCCEEEcc--CChHHHHHHHcCCCEEEEECCC
Confidence 2233333 56888843 3557899999999999987654
No 483
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=32.52 E-value=1e+02 Score=24.77 Aligned_cols=44 Identities=16% Similarity=0.142 Sum_probs=29.8
Q ss_pred CCCCCChHHHHHHHHHHHhCCCeEEEEeCccccccccCCCCCCCCeeEEEcC
Q 036519 22 YPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLHRDPSSSISIPLETIS 73 (365)
Q Consensus 22 ~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~~~~~~~~gi~~~~l~ 73 (365)
.|+.|++- -.++++|.++||+|+.++-......- . .+++.+..+
T Consensus 4 ~GatG~vG--~~l~~~L~~~~~~V~~~~R~~~~~~~-~-----~~~~~~~~d 47 (183)
T PF13460_consen 4 FGATGFVG--RALAKQLLRRGHEVTALVRSPSKAED-S-----PGVEIIQGD 47 (183)
T ss_dssp ETTTSHHH--HHHHHHHHHTTSEEEEEESSGGGHHH-C-----TTEEEEESC
T ss_pred ECCCChHH--HHHHHHHHHCCCEEEEEecCchhccc-c-----cccccceee
Confidence 45556553 45899999999999998865442111 3 678877664
No 484
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=32.36 E-value=86 Score=27.27 Aligned_cols=35 Identities=20% Similarity=0.210 Sum_probs=30.2
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEe
Q 036519 15 AHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVT 49 (365)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~ 49 (365)
..|.|+.=|+-|-..=...||..|+++|++|.++=
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~La~~G~kVlliD 36 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVG 36 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 34677766899999999999999999999999883
No 485
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=32.21 E-value=57 Score=28.17 Aligned_cols=33 Identities=12% Similarity=0.317 Sum_probs=29.9
Q ss_pred hccCCCCcEEEEEcCCCCCChHHHHHHHHHHHh
Q 036519 8 ASASSKLAHCLVLSYPAQGHMNPLLQFSKRLEH 40 (365)
Q Consensus 8 ~~~~~~~~~il~~~~~~~GH~~p~l~la~~L~~ 40 (365)
+..++.+.|+++...|+.|.....+.||++|..
T Consensus 42 ia~~gnmP~liisGpPG~GKTTsi~~LAr~LLG 74 (333)
T KOG0991|consen 42 IAKEGNMPNLIISGPPGTGKTTSILCLARELLG 74 (333)
T ss_pred HHHcCCCCceEeeCCCCCchhhHHHHHHHHHhC
Confidence 556788999999999999999999999999964
No 486
>PRK06526 transposase; Provisional
Probab=32.17 E-value=31 Score=30.16 Aligned_cols=45 Identities=18% Similarity=0.206 Sum_probs=36.7
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCcccccccc
Q 036519 14 LAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLH 58 (365)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~ 58 (365)
..+++++..++.|-..=..+|+.++.++|+.|.|.+.......+.
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~ 142 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLA 142 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHH
Confidence 457888889999999999999999999999998877665554443
No 487
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=32.13 E-value=1e+02 Score=26.72 Aligned_cols=35 Identities=6% Similarity=-0.002 Sum_probs=25.8
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 036519 15 AHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTT 50 (365)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~ 50 (365)
-|+++++.++.|. ---.++|++|.++|++|++...
T Consensus 8 ~k~~lITGas~~~-GIG~a~a~~la~~G~~v~~~~r 42 (260)
T PRK06603 8 GKKGLITGIANNM-SISWAIAQLAKKHGAELWFTYQ 42 (260)
T ss_pred CcEEEEECCCCCc-chHHHHHHHHHHcCCEEEEEeC
Confidence 3688888887631 1346788999999999987653
No 488
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=32.11 E-value=34 Score=32.05 Aligned_cols=35 Identities=26% Similarity=0.368 Sum_probs=23.6
Q ss_pred CCCChHHHHH---HHHHHHhCCCeEEEEeC-cccccccc
Q 036519 24 AQGHMNPLLQ---FSKRLEHNGIKVTLVTT-YFISKSLH 58 (365)
Q Consensus 24 ~~GH~~p~l~---la~~L~~~Gh~Vt~~~~-~~~~~~v~ 58 (365)
-.||+.|.+. +|+-++.+||+|.|+++ +.+...++
T Consensus 15 HlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~ 53 (391)
T PF09334_consen 15 HLGHLYPYLAADVLARYLRLRGHDVLFVTGTDEHGSKIE 53 (391)
T ss_dssp BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHH
T ss_pred CCChhHHHHHHHHHHHHHhhcccceeeEEecchhhHHHH
Confidence 5699997773 57777789999998865 44444443
No 489
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=32.05 E-value=32 Score=30.39 Aligned_cols=34 Identities=18% Similarity=0.218 Sum_probs=24.7
Q ss_pred HHHHHHHhCCCeEEEEeCccccccccCCCCCCCCeeEEE
Q 036519 33 QFSKRLEHNGIKVTLVTTYFISKSLHRDPSSSISIPLET 71 (365)
Q Consensus 33 ~la~~L~~~Gh~Vt~~~~~~~~~~v~~~~~~~~gi~~~~ 71 (365)
-+|..|.+.||+|+++......+.+.+ .|+.+..
T Consensus 5 ~~a~~L~~~G~~V~l~~r~~~~~~i~~-----~Gl~i~~ 38 (293)
T TIGR00745 5 LYGAYLARAGHDVTLLARGEQLEALNQ-----EGLRIVS 38 (293)
T ss_pred HHHHHHHhCCCcEEEEecHHHHHHHHH-----CCcEEEe
Confidence 468889999999999988655556654 4555443
No 490
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=32.02 E-value=44 Score=23.31 Aligned_cols=22 Identities=18% Similarity=0.190 Sum_probs=18.1
Q ss_pred HHHHHHHHHhCCCeEEEEeCcc
Q 036519 31 LLQFSKRLEHNGIKVTLVTTYF 52 (365)
Q Consensus 31 ~l~la~~L~~~Gh~Vt~~~~~~ 52 (365)
+-.+.+.|+++||+|+=+....
T Consensus 10 Ls~v~~~L~~~GyeVv~l~~~~ 31 (80)
T PF03698_consen 10 LSNVKEALREKGYEVVDLENEQ 31 (80)
T ss_pred chHHHHHHHHCCCEEEecCCcc
Confidence 4468899999999999877655
No 491
>PF05524 PEP-utilisers_N: PEP-utilising enzyme, N-terminal; InterPro: IPR008731 This sequence identifies proteins which are a component of the phosphoenolpyruvate:sugar phosphotransferase system (PTS), a major carbohydrate active transport system. The PTS system is found throughout the bacterial kingdom, and is responsible for the coupled phosphorylation and translocation of numerous sugars across the cytoplasmic membrane []. This entry represents the N-terminal domain of enzyme I (EIN) which transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) which in turn phosphorylates a group of membrane-associated proteins, known as enzyme II. The N-terminal domain of EI (EIN) extends from residues 1 to 259 and can be phosphorylated in a fully reversible manner by phosphorylated HPr. EIN, however, cannot be autophosphorylated by PEP [, ].; GO: 0005351 sugar:hydrogen symporter activity, 0008965 phosphoenolpyruvate-protein phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 2WQD_A 2XDF_B 2HWG_A 3EZB_A 2L5H_A 3EZA_A 1EZB_A 2EZA_A 1EZA_A 1EZC_A ....
Probab=32.00 E-value=1.2e+02 Score=22.80 Aligned_cols=41 Identities=17% Similarity=0.264 Sum_probs=31.3
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 036519 320 AIAHCIGEILEGDKWRNFAKEAVAKGGSSDKNIDDFVANLI 360 (365)
Q Consensus 320 ~l~~~i~~ll~~~~~~~~a~~~~~~~g~s~~~~~~~~~~i~ 360 (365)
+|.++=..+|+|+.+.+.+++...++.+...++.+.++.+.
T Consensus 68 ~If~ah~~~L~D~~l~~~v~~~I~~~~~Ae~Av~~~~~~~~ 108 (123)
T PF05524_consen 68 AIFEAHLMMLEDPELIDEVEELIREGKNAEYAVQEVIEEYI 108 (123)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHhHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 78888889999999999999877776687778877776554
No 492
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=31.94 E-value=1.8e+02 Score=25.53 Aligned_cols=43 Identities=9% Similarity=0.019 Sum_probs=35.4
Q ss_pred CCCCcEEEEEcC-CCCCChHHHHHHHHHHHhCCCeEEEEeCccc
Q 036519 11 SSKLAHCLVLSY-PAQGHMNPLLQFSKRLEHNGIKVTLVTTYFI 53 (365)
Q Consensus 11 ~~~~~~il~~~~-~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~ 53 (365)
+++..|-.|+.. |+-|-..-.-.||-+|+.-++.|.+++++..
T Consensus 15 ~q~slKwifVGGKGGVGKTTcs~sLAvqla~~r~~vLiISTDPA 58 (323)
T KOG2825|consen 15 EQTSLKWIFVGGKGGVGKTTCSCSLAVQLAKVRESVLIISTDPA 58 (323)
T ss_pred hcceeeEEEEcCcCCcCccchhhHHHHHHhccCCceEEeecCcc
Confidence 355666677766 6889999999999999999999999998743
No 493
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=31.86 E-value=70 Score=27.03 Aligned_cols=36 Identities=19% Similarity=0.242 Sum_probs=24.8
Q ss_pred HHhcCCCcEEEEcCCC--ccHHHHHHHhCCceEEEeccc
Q 036519 106 VERMNDVDCIVYDSFL--PWALDVAKKFGLTGAAFLTQS 142 (365)
Q Consensus 106 l~~~~~pD~vv~D~~~--~~a~~~A~~~giP~v~~~~~~ 142 (365)
+..+ +||+||..... ......-...++|++.+....
T Consensus 56 i~~l-~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~ 93 (238)
T PF01497_consen 56 ILAL-KPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSS 93 (238)
T ss_dssp HHHT---SEEEEETTSSCHHHHHHHHHTTSEEEEESSTT
T ss_pred HHhC-CCCEEEEeccccchHHHHHHhcccceEEEeeccc
Confidence 4445 99999987665 346677778899999976654
No 494
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=31.83 E-value=65 Score=25.74 Aligned_cols=39 Identities=18% Similarity=0.163 Sum_probs=27.5
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCcccccccc
Q 036519 14 LAHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFISKSLH 58 (365)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~v~ 58 (365)
..+|+++-.|.-| ...++.|.+.|++|+++. +...+.+.
T Consensus 13 ~~~vlVvGGG~va-----~rka~~Ll~~ga~V~VIs-p~~~~~l~ 51 (157)
T PRK06719 13 NKVVVIIGGGKIA-----YRKASGLKDTGAFVTVVS-PEICKEMK 51 (157)
T ss_pred CCEEEEECCCHHH-----HHHHHHHHhCCCEEEEEc-CccCHHHH
Confidence 4567777666443 778999999999999995 44444443
No 495
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=31.66 E-value=47 Score=28.37 Aligned_cols=26 Identities=15% Similarity=0.331 Sum_probs=19.2
Q ss_pred ChHHHHHHHHHHHhCCCeEEEEeCcc
Q 036519 27 HMNPLLQFSKRLEHNGIKVTLVTTYF 52 (365)
Q Consensus 27 H~~p~l~la~~L~~~Gh~Vt~~~~~~ 52 (365)
|...|-..|++|+++|++|.++..++
T Consensus 47 ~~saMRhfa~~L~~~G~~V~Y~~~~~ 72 (224)
T PF04244_consen 47 FFSAMRHFADELRAKGFRVHYIELDD 72 (224)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE-TT-
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 56778889999999999999998763
No 496
>PRK10818 cell division inhibitor MinD; Provisional
Probab=31.65 E-value=84 Score=27.44 Aligned_cols=38 Identities=16% Similarity=0.236 Sum_probs=30.3
Q ss_pred cEEEEEcC--CCCCChHHHHHHHHHHHhCCCeEEEEeCcc
Q 036519 15 AHCLVLSY--PAQGHMNPLLQFSKRLEHNGIKVTLVTTYF 52 (365)
Q Consensus 15 ~~il~~~~--~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~ 52 (365)
+||+-+.. |+-|-..-...||..|+++|++|.++=.+.
T Consensus 2 ~kviav~s~KGGvGKTt~a~nlA~~la~~g~~vllvD~D~ 41 (270)
T PRK10818 2 ARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDI 41 (270)
T ss_pred ceEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 45543433 789999999999999999999999886554
No 497
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=31.58 E-value=85 Score=26.94 Aligned_cols=36 Identities=19% Similarity=0.290 Sum_probs=29.6
Q ss_pred EEEEcC-CCCCChHHHHHHHHHHHhCCCeEEEEeCcc
Q 036519 17 CLVLSY-PAQGHMNPLLQFSKRLEHNGIKVTLVTTYF 52 (365)
Q Consensus 17 il~~~~-~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~ 52 (365)
|.|... |+-|-..-.+.||..|+++|.+|.++=.+.
T Consensus 4 I~v~n~KGGvGKTT~a~nLA~~la~~G~~VlliD~Dp 40 (231)
T PRK13849 4 LTFCSFKGGAGKTTALMGLCAALASDGKRVALFEADE 40 (231)
T ss_pred EEEECCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 444444 789999999999999999999999886543
No 498
>PF07801 DUF1647: Protein of unknown function (DUF1647); InterPro: IPR012444 This entry consists of hypothetical proteins of unknown function.
Probab=31.54 E-value=85 Score=24.65 Aligned_cols=62 Identities=8% Similarity=0.114 Sum_probs=44.7
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHHHHhCC--CeEEEEeCccccccccCCCCCCCCeeEEEcC
Q 036519 12 SKLAHCLVLSYPAQGHMNPLLQFSKRLEHNG--IKVTLVTTYFISKSLHRDPSSSISIPLETIS 73 (365)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~l~la~~L~~~G--h~Vt~~~~~~~~~~v~~~~~~~~gi~~~~l~ 73 (365)
....+|+||+.-+.+|+.-.+...+.+++.. |.+.+..-.-....+++......++++..++
T Consensus 57 ~n~~~vvfVSa~S~~h~~~~~~~i~si~~~~P~~k~ilY~LgL~~~~i~~L~~~~~n~evr~Fn 120 (142)
T PF07801_consen 57 KNSSDVVFVSATSDNHFNESMKSISSIRKFYPNHKIILYDLGLSEEQIKKLKKNFCNVEVRKFN 120 (142)
T ss_pred ccCCccEEEEEecchHHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHhcCCceEEEECC
Confidence 4467899999999999999999999999864 7777776443333333211122678888886
No 499
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=31.50 E-value=1e+02 Score=21.27 Aligned_cols=33 Identities=21% Similarity=0.430 Sum_probs=25.6
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEE
Q 036519 15 AHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLV 48 (365)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~ 48 (365)
-+|++++. ..++..-.+.+++.|++.|.+|.+-
T Consensus 2 ~~v~ii~~-~~~~~~~a~~~~~~Lr~~g~~v~~d 34 (91)
T cd00860 2 VQVVVIPV-TDEHLDYAKEVAKKLSDAGIRVEVD 34 (91)
T ss_pred eEEEEEee-CchHHHHHHHHHHHHHHCCCEEEEE
Confidence 34555554 4567788999999999999999874
No 500
>PRK08309 short chain dehydrogenase; Provisional
Probab=31.47 E-value=63 Score=26.39 Aligned_cols=97 Identities=20% Similarity=0.241 Sum_probs=49.7
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCcccc-ccccCCCCCCCCeeEEEcCCCCCCCCCCCcCCHHHHHHH
Q 036519 15 AHCLVLSYPAQGHMNPLLQFSKRLEHNGIKVTLVTTYFIS-KSLHRDPSSSISIPLETISDGYDEGRSAQAETDQAYVDR 93 (365)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~la~~L~~~Gh~Vt~~~~~~~~-~~v~~~~~~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~ 93 (365)
|+++++ .++ | +. -.+++.|.++|++|++++..... +.+.........+.+...+ +.+ ....
T Consensus 1 m~vlVt-GGt-G-~g--g~la~~L~~~G~~V~v~~R~~~~~~~l~~~l~~~~~i~~~~~D--v~d--------~~sv--- 62 (177)
T PRK08309 1 MHALVI-GGT-G-ML--KRVSLWLCEKGFHVSVIARREVKLENVKRESTTPESITPLPLD--YHD--------DDAL--- 62 (177)
T ss_pred CEEEEE-CcC-H-HH--HHHHHHHHHCcCEEEEEECCHHHHHHHHHHhhcCCcEEEEEcc--CCC--------HHHH---
Confidence 455444 444 5 22 35899999999999987643211 1111000001123332221 221 1111
Q ss_pred HHHHhHHHHHHHHHhcCCCcEEEEcCCCcc---HHHHHHHhCCc
Q 036519 94 FWQIGVQTLTELVERMNDVDCIVYDSFLPW---ALDVAKKFGLT 134 (365)
Q Consensus 94 ~~~~~~~~l~~ll~~~~~pD~vv~D~~~~~---a~~~A~~~giP 134 (365)
...+..++++..++|.+|...+... ...+|++.|+.
T Consensus 63 -----~~~i~~~l~~~g~id~lv~~vh~~~~~~~~~~~~~~gv~ 101 (177)
T PRK08309 63 -----KLAIKSTIEKNGPFDLAVAWIHSSAKDALSVVCRELDGS 101 (177)
T ss_pred -----HHHHHHHHHHcCCCeEEEEeccccchhhHHHHHHHHccC
Confidence 1122333454447788887765543 56888999998
Done!