BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036520
(473 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 125 bits (314), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 117/494 (23%), Positives = 213/494 (43%), Gaps = 48/494 (9%)
Query: 3 RKLHVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPKNIQRLPKP-APESEVAALIN 61
RK HVVM+P+ GH+ P F+L+ L G ++F++T N +RL K P+ A
Sbjct: 7 RKPHVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPK----AFDG 62
Query: 62 FVEFPLPASAALDDKLLLPEG-AEATVDIP----SENIQYLKIAYDLLQHPFKQFVAQQS 116
F +F ++ D L EG + + D+P S +LK +LL
Sbjct: 63 FTDFNF---ESIPDGLTPMEGDGDVSQDVPTLCQSVRKNFLKPYCELLTR-LNHSTNVPP 118
Query: 117 VDWIIVDVMSHWAGKIAQEYHVPXXXXXXXXXXXXQFIANPECLVGDG----QKRVRPSA 172
V ++ D + + A+E+ +P + + V G + +
Sbjct: 119 VTCLVSDCCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGIIPFKDESYLTN 178
Query: 173 ESLTSVPEWVDFPSSVALRTFDAIGMHHGFYGMNASGITDAH--RTAEILHSCQAMAIRS 230
L + +W+ L+ F + N + I A+ ++ + + +
Sbjct: 179 GCLETKVDWIP-----GLKNFRLKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTILLNT 233
Query: 231 CPEFEGEYLNLLEKLTGKPVIPVGLL------TPEPNSAKGRDHQI----SKIFQWLDEQ 280
E E + +N L T + P+G L TP+ + D + ++ WL+ +
Sbjct: 234 FNELESDVINALSS-TIPSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLESK 292
Query: 281 KPRSVVFVGFGSECKLSKDQVYEIAYGLELSGLPFLWALRKPEWATDDVDALPLGFADTI 340
+P SVV+V FGS ++ +Q+ E A+GL FLW +R P+ F + I
Sbjct: 293 EPGSVVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIR-PDLVIGGSVIFSSEFTNEI 351
Query: 341 RGKGIVSIGWAPQLEILAHPSIGTSLFHAGWGSVIETLQFGHSLVVLPLIIDQPLNARLL 400
+G+++ W PQ ++L HPSIG L H GW S E++ G ++ P DQP + R +
Sbjct: 352 ADRGLIA-SWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFI 410
Query: 401 VDK-DLAVQVERKDDGSFTRDGIAKALRLATVSEEGEKLRVRAREAANTFNDKKLHDDYS 459
++ ++ +++ D + R+ +AK + ++G+K++ +A E KK ++
Sbjct: 411 CNEWEIGMEI----DTNVKREELAKLINEVIAGDKGKKMKQKAMELK-----KKAEENTR 461
Query: 460 VRFVEYLKINVATK 473
Y+ +N K
Sbjct: 462 PGGCSYMNLNKVIK 475
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 121 bits (303), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 126/468 (26%), Positives = 201/468 (42%), Gaps = 63/468 (13%)
Query: 6 HVVMLPWSAFGHLMPFFQLSIALAK-SGVKVSFI----STPKNIQR-LPKPAPESEVAAL 59
HV ++P GHL+P + + L G+ V+F+ P QR + P S +
Sbjct: 8 HVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGPPSKAQRTVLDSLPSSISSVF 67
Query: 60 INFVEFP-LPASAALDDKLLLPEGAEATVDIPSENIQYLKIAYDLLQHPFKQFVAQQSV- 117
+ V+ L +S ++ ++ ++ + N + K+ F FV +
Sbjct: 68 LPPVDLTDLSSSTRIESRI--------SLTVTRSNPELRKV--------FDSFVEGGRLP 111
Query: 118 DWIIVDVMSHWAGKIAQEYHVPXXXXXXXXXXXXQFIANPECLVGDGQKRVRPSAESLTS 177
++VD+ A +A E+HVP F + L R E L
Sbjct: 112 TALVVDLFGTDAFDVAVEFHVPPYIFYPTTANVLSFFLHLPKLDETVSCEFRELTEPLM- 170
Query: 178 VPEWV-----DFPSSVALRTFDAIG--MHHGFYGMNASGITDAHRTAEILHSCQAMAIRS 230
+P V DF R DA +H+ T ++ AE + + +
Sbjct: 171 LPGCVPVAGKDFLDPAQDRKDDAYKWLLHN----------TKRYKEAE------GILVNT 214
Query: 231 CPEFEGEYLNLLEK--LTGKPVIPVGLLTPEPNSAKGRDHQISKIFQWLDEQKPRSVVFV 288
E E + L++ L PV PVG L + + + S+ +WLD Q SV++V
Sbjct: 215 FFELEPNAIKALQEPGLDKPPVYPVGPLV-NIGKQEAKQTEESECLKWLDNQPLGSVLYV 273
Query: 289 GFGSECKLSKDQVYEIAYGLELSGLPFLWALRKPEW-----------ATDDVDALPLGFA 337
FGS L+ +Q+ E+A GL S FLW +R P TD + LP GF
Sbjct: 274 SFGSGGTLTCEQLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFL 333
Query: 338 DTIRGKGIVSIGWAPQLEILAHPSIGTSLFHAGWGSVIETLQFGHSLVVLPLIIDQPLNA 397
+ + +G V WAPQ ++LAHPS G L H GW S +E++ G L+ PL +Q +NA
Sbjct: 334 ERTKKRGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNA 393
Query: 398 RLLV-DKDLAVQVERKDDGSFTRDGIAKALRLATVSEEGEKLRVRARE 444
LL D A++ DDG R+ +A+ ++ EEG+ +R + +E
Sbjct: 394 VLLSEDIRAALRPRAGDDGLVRREEVARVVKGLMEGEEGKGVRNKMKE 441
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 84/240 (35%), Positives = 124/240 (51%), Gaps = 20/240 (8%)
Query: 214 HRTAEILHSCQAMAIRSCPEFEGEYLN-LLEKL-TGKPVIPVGLLTPEPNSAKGRDHQIS 271
HR ++L A+ I S E + N L KL T + P L+TP P +
Sbjct: 205 HRMGQVLPKATAVFINSFEELDDSLTNDLKSKLKTYLNIGPFNLITPPPVVP-----NTT 259
Query: 272 KIFQWLDEQKPRSVVFVGFGSECKLSKDQVYEIAYGLELSGLPFLWALRKPEWATDDVDA 331
QWL E+KP SVV++ FG+ +V ++ LE S +PF+W+LR
Sbjct: 260 GCLQWLKERKPTSVVYISFGTVTTPPPAEVVALSEALEASRVPFIWSLRDKARV-----H 314
Query: 332 LPLGFADTIRGKGIVSIGWAPQLEILAHPSIGTSLFHAGWGSVIETLQFGHSLVVLPLII 391
LP GF + RG G+V + WAPQ E+LAH ++G + H GW S+ E++ G L+ P
Sbjct: 315 LPEGFLEKTRGYGMV-VPWAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFG 373
Query: 392 DQPLNARLLVDK-DLAVQVERKDDGSFTRDGIAKALRLATVSEEGEKLR--VRA-REAAN 447
DQ LN R++ D ++ V++E G FT+ G+ E+G+KLR +RA RE A+
Sbjct: 374 DQRLNGRMVEDVLEIGVRIE---GGVFTKSGLMSCFDQILSQEKGKKLRENLRALRETAD 430
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 111 bits (278), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 83/243 (34%), Positives = 121/243 (49%), Gaps = 22/243 (9%)
Query: 211 TDAHRTAEILHSCQAMAIRSC----PEFEGEYLNLLEKLTGKPVIPVGLLTPEPNSAKGR 266
T H+ L A+AI S P E E + + L V P L TP+ K
Sbjct: 204 TMLHKMGLELPRANAVAINSFATIHPLIENELNSKFKLLLN--VGPFNLTTPQ---RKVS 258
Query: 267 DHQISKIFQWLDEQKPRSVVFVGFGSECKLSKDQVYEIAYGLELSGLPFLWALRKPEWAT 326
D +WLD+ + SVV++ FGS ++ +A LE G PF+W+ R
Sbjct: 259 DEH--GCLEWLDQHENSSVVYISFGSVVTPPPHELTALAESLEECGFPFIWSFRG----- 311
Query: 327 DDVDALPLGFADTIRGKGIVSIGWAPQLEILAHPSIGTSLFHAGWGSVIETLQFGHSLVV 386
D + LP GF + + KG + + WAPQ+EIL H S+G L H+GW SV+E + G ++
Sbjct: 312 DPKEKLPKGFLERTKTKGKI-VAWAPQVEILKHSSVGVFLTHSGWNSVLECIVGGVPMIS 370
Query: 387 LPLIIDQPLNARLLVDKDLAVQVERKDDGSFTRDGIAKALRLATVSEEGEKLR---VRAR 443
P DQ LN +L + L + V D+G T++ I KAL L SE+G +R V+ +
Sbjct: 371 RPFFGDQGLNT-ILTESVLEIGV-GVDNGVLTKESIKKALELTMSSEKGGIMRQKIVKLK 428
Query: 444 EAA 446
E+A
Sbjct: 429 ESA 431
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/231 (32%), Positives = 118/231 (51%), Gaps = 20/231 (8%)
Query: 209 GITDAHRTAEILHSCQAMAIRSCPEFEGEYLNLLEKLTGK--PVIPVGLLTP---EPNSA 263
G ++ AE + + + + + E ++ L K P+ VG L +PN
Sbjct: 198 GYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDHDEKIPPIYAVGPLLDLKGQPN-P 256
Query: 264 KGRDHQISKIFQWLDEQKPRSVVFVGFGSE-CKLSKDQVYEIAYGLELSGLPFLWALRKP 322
K Q I +WLDEQ +SVVF+ FGS Q+ EIA GL+ SG+ FLW+
Sbjct: 257 KLDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWS---- 312
Query: 323 EWATDDVDALPLGFAD--TIRGKGIVSIGWAPQLEILAHPSIGTSLFHAGWGSVIETLQF 380
+ + P GF + + GKG++ GWAPQ+E+LAH +IG + H GW S++E++ F
Sbjct: 313 --NSAEKKVFPEGFLEWMELEGKGMIC-GWAPQVEVLAHKAIGGFVSHCGWNSILESMWF 369
Query: 381 GHSLVVLPLIIDQPLNARLLVDK---DLAVQVE-RKDDGSFTRDGIAKALR 427
G ++ P+ +Q LNA LV + L ++V+ RK + I K L+
Sbjct: 370 GVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLK 420
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/231 (32%), Positives = 118/231 (51%), Gaps = 20/231 (8%)
Query: 209 GITDAHRTAEILHSCQAMAIRSCPEFEGEYLNLLEKLTGK--PVIPVGLLTP---EPNSA 263
G ++ AE + + + + + E ++ L K P+ VG L +PN
Sbjct: 198 GYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDHDEKIPPIYAVGPLLDLKGQPN-P 256
Query: 264 KGRDHQISKIFQWLDEQKPRSVVFVGFGSE-CKLSKDQVYEIAYGLELSGLPFLWALRKP 322
K Q I +WLDEQ +SVVF+ FGS Q+ EIA GL+ SG+ FLW+
Sbjct: 257 KLDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWS---- 312
Query: 323 EWATDDVDALPLGFAD--TIRGKGIVSIGWAPQLEILAHPSIGTSLFHAGWGSVIETLQF 380
+ + P GF + + GKG++ GWAPQ+E+LAH +IG + H GW S++E++ F
Sbjct: 313 --NSAEKKVFPEGFLEWMELEGKGMIC-GWAPQVEVLAHKAIGGFVSHCGWNSILESMWF 369
Query: 381 GHSLVVLPLIIDQPLNARLLVDK---DLAVQVE-RKDDGSFTRDGIAKALR 427
G ++ P+ +Q LNA LV + L ++V+ RK + I K L+
Sbjct: 370 GVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLK 420
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 6/93 (6%)
Query: 350 WAPQLEILAHPSIGTSLFHAGWGSVIETLQFGHSLVVLPLIIDQPLNARLLVDKDLAVQV 409
W PQL+IL S + HAG GS +E L +V +P I +Q +NA +V+ L +
Sbjct: 312 WVPQLDILTKAS--AFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVELGLGRHI 369
Query: 410 ERKDDGSFTRDGIAKALRLATVSEEGEKLRVRA 442
R T + + +A+ LA S+ G R+ A
Sbjct: 370 PRD---QVTAEKLREAV-LAVASDPGVAERLAA 398
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 29/61 (47%)
Query: 350 WAPQLEILAHPSIGTSLFHAGWGSVIETLQFGHSLVVLPLIIDQPLNARLLVDKDLAVQV 409
W PQ ++L HP + H G + E + G V +PL DQP N + AV+V
Sbjct: 75 WIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDNIAHXKARGAAVRV 134
Query: 410 E 410
+
Sbjct: 135 D 135
>pdb|4G2T|A Chain A, Crystal Structure Of Streptomyces Sp. Sf2575
Glycosyltransferase Ssfs6, Complexed With Thymidine
Diphosphate
Length = 397
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 85/206 (41%), Gaps = 32/206 (15%)
Query: 258 PEPNSAKGR----DHQISKIFQWLDEQKPRSVVFVGFGSECKLSKDQVYEIAYGLELSGL 313
P+P + K R + + ++ W+ E++ + + + FG+ L GL
Sbjct: 197 PKPGTTKXRYVPYNGRNDQVPSWVFEERKQPRLCLTFGTRVPLPNTNTIP-------GGL 249
Query: 314 PFLWALRK--PEWATDDVDALPLGFADTIRG--KGIVSIGWAPQLEILAHPSIGTSLFHA 369
L AL + P+ + V A+ A T++ +G+++ G P I P+ + H
Sbjct: 250 SLLQALSQELPKLGFEVVVAVSDKLAQTLQPLPEGVLAAGQFPLSAIX--PACDVVVHHG 307
Query: 370 GWGSVIETLQFGHSLVVLPLIIDQPLNARLL---------------VDKDLAVQVERKDD 414
G G+ + L G V +P+I + +ARLL V+ LA +DD
Sbjct: 308 GHGTTLTCLSEGVPQVSVPVIAEVWDSARLLHAAGAGVEVPWEQAGVESVLAACARIRDD 367
Query: 415 GSFTRDGIAKALRLATVSEEGEKLRV 440
S+ + A AT+ + +R+
Sbjct: 368 SSYVGNARRLAAEXATLPTPADIVRL 393
>pdb|4FZR|A Chain A, Crystal Structure Of Ssfs6, Streptomyces Sp. Sf2575
Glycosyltransferase
Length = 398
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 85/206 (41%), Gaps = 32/206 (15%)
Query: 258 PEPNSAKGR----DHQISKIFQWLDEQKPRSVVFVGFGSECKLSKDQVYEIAYGLELSGL 313
P+P + K R + + ++ W+ E++ + + + FG+ L GL
Sbjct: 198 PKPGTTKXRYVPYNGRNDQVPSWVFEERKQPRLCLTFGTRVPLPNTNTIP-------GGL 250
Query: 314 PFLWALRK--PEWATDDVDALPLGFADTIRG--KGIVSIGWAPQLEILAHPSIGTSLFHA 369
L AL + P+ + V A+ A T++ +G+++ G P I P+ + H
Sbjct: 251 SLLQALSQELPKLGFEVVVAVSDKLAQTLQPLPEGVLAAGQFPLSAI--XPACDVVVHHG 308
Query: 370 GWGSVIETLQFGHSLVVLPLIIDQPLNARLL---------------VDKDLAVQVERKDD 414
G G+ + L G V +P+I + +ARLL V+ LA +DD
Sbjct: 309 GHGTTLTCLSEGVPQVSVPVIAEVWDSARLLHAAGAGVEVPWEQAGVESVLAACARIRDD 368
Query: 415 GSFTRDGIAKALRLATVSEEGEKLRV 440
S+ + A AT+ + +R+
Sbjct: 369 SSYVGNARRLAAEXATLPTPADIVRL 394
>pdb|3IAA|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
pdb|3IAA|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
Length = 416
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 350 WAPQLEILAHPSIGTSLFHAGWGSVIETLQFGHSLVVLPLIID-QPLNARL 399
W P +++L ++ + H G G++ E L +G LVV+P D QP R+
Sbjct: 304 WVPHVKVLEQATVCVT--HGGXGTLXEALYWGRPLVVVPQSFDVQPXARRV 352
>pdb|3RSC|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
pdb|3RSC|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
Length = 415
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 350 WAPQLEILAHPSIGTSLFHAGWGSVIETLQFGHSLVVLPLIID-QPLNARL 399
W P +++L ++ + H G G++ E L +G LVV+P D QP R+
Sbjct: 304 WVPHVKVLEQATVCVT--HGGXGTLXEALYWGRPLVVVPQSFDVQPXARRV 352
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 350 WAPQLEILAHPSIGTSLFHAGWGSVIETLQFGHSLVVLPLIIDQPLNARLL 400
W PQL IL + + HAG G E L ++ +P +DQ NA +L
Sbjct: 290 WVPQLAILRQADLFVT--HAGAGGSQEGLATATPMIAVPQAVDQFGNADML 338
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 3 RKLHVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTP 41
R+ H++ GH+ P L LA+ G ++++++TP
Sbjct: 3 RQRHILFANVQGHGHVYPSLGLVSELARRGHRITYVTTP 41
>pdb|2GWD|A Chain A, Crystal Structure Of Plant Glutamate Cysteine Ligase In
Complex With Mg2+ And L-glutamate
Length = 449
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 294 CKLSKDQVYEIAYGLELSGLPFLWALRKPEWATDDVDALPLGFADTIR 341
C +Y++ E G+ FL +P+W +D+ +P G D +R
Sbjct: 113 CAEVNSHLYQVKAVAEEMGIGFLGMGFQPKWRREDIPTMPKGRYDIMR 160
>pdb|3V10|A Chain A, Crystal Structure Of The Collagen Binding Domain Of
Erysipelothrix Rhusiopathiae Surface Protein Rspb
pdb|3V10|B Chain B, Crystal Structure Of The Collagen Binding Domain Of
Erysipelothrix Rhusiopathiae Surface Protein Rspb
Length = 321
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 6/92 (6%)
Query: 374 VIETLQFGHSLVVLPLIIDQPLNARLLVDKDLAVQVERKDDGSFTRDGIAKALRLATVSE 433
VI+T+ GH LV +++D N L K ++ + K+ G+ T +G + L + E
Sbjct: 200 VIDTIGEGHKLVDGSIMVDVEANGEL---KHISAEAFNKEYGTITVEG--QVLTVMIPKE 254
Query: 434 EGEKLRVRAREAANTFNDKKLHDDYSVRFVEY 465
+ K F DKKL + + +EY
Sbjct: 255 KAAKTTFTVTYDTRAF-DKKLENYKNSSTIEY 285
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,961,493
Number of Sequences: 62578
Number of extensions: 574975
Number of successful extensions: 1253
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1224
Number of HSP's gapped (non-prelim): 26
length of query: 473
length of database: 14,973,337
effective HSP length: 102
effective length of query: 371
effective length of database: 8,590,381
effective search space: 3187031351
effective search space used: 3187031351
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)