Query 036520
Match_columns 473
No_of_seqs 135 out of 1304
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 02:52:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036520.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036520hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02670 transferase, transfer 100.0 2.3E-69 5.1E-74 531.0 42.6 460 1-471 3-468 (472)
2 PLN02208 glycosyltransferase f 100.0 7.1E-67 1.5E-71 512.4 40.8 436 1-469 1-440 (442)
3 PLN00414 glycosyltransferase f 100.0 4.1E-66 8.8E-71 507.6 42.3 441 1-472 1-444 (446)
4 PLN02764 glycosyltransferase f 100.0 1.5E-65 3.3E-70 500.0 42.6 441 3-471 4-448 (453)
5 PLN02863 UDP-glucoronosyl/UDP- 100.0 1.2E-64 2.6E-69 501.4 41.5 452 2-470 7-473 (477)
6 PLN02410 UDP-glucoronosyl/UDP- 100.0 8.1E-63 1.8E-67 485.0 41.7 431 4-468 7-450 (451)
7 PLN02173 UDP-glucosyl transfer 100.0 4.7E-63 1E-67 484.2 39.6 422 1-467 1-447 (449)
8 PLN02534 UDP-glycosyltransfera 100.0 8E-63 1.7E-67 487.1 40.1 453 1-470 5-488 (491)
9 PLN02992 coniferyl-alcohol glu 100.0 8.1E-63 1.8E-67 485.1 39.9 436 2-468 3-469 (481)
10 PLN03007 UDP-glucosyltransfera 100.0 7.4E-62 1.6E-66 485.9 41.5 450 3-469 4-481 (482)
11 PLN03004 UDP-glycosyltransfera 100.0 7E-62 1.5E-66 476.2 37.0 424 1-450 1-439 (451)
12 PLN02562 UDP-glycosyltransfera 100.0 1.8E-61 4E-66 476.9 39.7 429 1-467 3-448 (448)
13 PLN02210 UDP-glucosyl transfer 100.0 2.5E-61 5.5E-66 476.4 40.0 430 2-468 6-455 (456)
14 PLN02555 limonoid glucosyltran 100.0 3.6E-61 7.9E-66 474.8 39.7 442 4-471 7-472 (480)
15 PLN03015 UDP-glucosyl transfer 100.0 6.8E-61 1.5E-65 468.6 40.0 435 4-466 3-466 (470)
16 PLN00164 glucosyltransferase; 100.0 2E-60 4.3E-65 473.0 40.0 441 1-469 1-474 (480)
17 PLN02207 UDP-glycosyltransfera 100.0 2.1E-60 4.5E-65 467.2 39.2 442 1-470 1-467 (468)
18 PLN02152 indole-3-acetate beta 100.0 4.3E-60 9.3E-65 464.2 38.5 426 1-466 1-454 (455)
19 PLN02554 UDP-glycosyltransfera 100.0 1.1E-59 2.5E-64 469.5 38.7 438 4-469 2-479 (481)
20 PLN02448 UDP-glycosyltransfera 100.0 1.1E-58 2.3E-63 460.9 39.1 432 2-468 8-457 (459)
21 PLN02167 UDP-glycosyltransfera 100.0 1.8E-57 3.9E-62 453.0 39.2 445 3-468 2-472 (475)
22 PHA03392 egt ecdysteroid UDP-g 100.0 1.1E-51 2.4E-56 413.1 33.8 411 6-470 22-468 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 1.1E-53 2.3E-58 435.5 3.9 407 6-471 2-446 (500)
24 TIGR01426 MGT glycosyltransfer 100.0 5.1E-45 1.1E-49 360.2 23.6 387 10-467 1-391 (392)
25 cd03784 GT1_Gtf_like This fami 100.0 2.4E-44 5.2E-49 357.1 21.5 383 5-463 1-399 (401)
26 KOG1192 UDP-glucuronosyl and U 100.0 1.4E-42 3.1E-47 353.9 23.8 420 4-471 5-458 (496)
27 COG1819 Glycosyl transferases, 100.0 6.5E-43 1.4E-47 340.8 19.1 402 4-470 1-403 (406)
28 PRK12446 undecaprenyldiphospho 99.9 2.9E-25 6.3E-30 214.2 28.9 320 6-444 3-335 (352)
29 PF13528 Glyco_trans_1_3: Glyc 99.9 4.8E-26 1E-30 218.8 21.8 307 5-429 1-317 (318)
30 COG0707 MurG UDP-N-acetylgluco 99.9 5.4E-23 1.2E-27 195.8 26.1 326 5-450 1-339 (357)
31 TIGR00661 MJ1255 conserved hyp 99.9 8.1E-24 1.8E-28 202.8 19.0 307 6-439 1-318 (321)
32 PRK00726 murG undecaprenyldiph 99.9 1.5E-19 3.3E-24 176.6 28.3 341 5-466 2-355 (357)
33 cd03785 GT1_MurG MurG is an N- 99.8 2.3E-18 4.9E-23 167.9 26.9 328 6-451 1-340 (350)
34 COG4671 Predicted glycosyl tra 99.8 1.4E-16 3E-21 144.5 23.2 341 2-431 7-364 (400)
35 TIGR01133 murG undecaprenyldip 99.8 2.4E-16 5.2E-21 153.5 27.0 333 5-457 1-343 (348)
36 TIGR00215 lpxB lipid-A-disacch 99.7 2.3E-16 5.1E-21 154.5 21.7 351 5-464 6-384 (385)
37 PRK13609 diacylglycerol glucos 99.7 6.9E-16 1.5E-20 152.1 23.7 164 282-466 201-369 (380)
38 TIGR03590 PseG pseudaminic aci 99.7 1.9E-15 4.2E-20 141.2 17.7 104 284-399 171-278 (279)
39 PRK00025 lpxB lipid-A-disaccha 99.7 1.5E-14 3.3E-19 142.6 22.1 349 4-468 1-377 (380)
40 PRK13608 diacylglycerol glucos 99.7 8.5E-15 1.8E-19 144.3 20.0 166 282-468 201-371 (391)
41 PLN02605 monogalactosyldiacylg 99.6 1.5E-13 3.3E-18 135.2 23.8 111 343-465 265-378 (382)
42 PF04101 Glyco_tran_28_C: Glyc 99.5 2.7E-16 5.8E-21 136.0 -6.5 139 285-439 1-148 (167)
43 cd03814 GT1_like_2 This family 99.5 9.7E-11 2.1E-15 114.2 30.1 337 15-465 14-362 (364)
44 PLN02871 UDP-sulfoquinovose:DA 99.5 2.2E-10 4.7E-15 115.9 32.9 154 285-463 264-428 (465)
45 TIGR03492 conserved hypothetic 99.5 3.5E-11 7.5E-16 118.2 25.3 359 13-464 5-394 (396)
46 cd03823 GT1_ExpE7_like This fa 99.4 1.4E-09 3.1E-14 105.6 30.4 158 284-466 191-357 (359)
47 COG3980 spsG Spore coat polysa 99.4 1.1E-11 2.4E-16 109.6 12.7 149 284-450 159-308 (318)
48 cd04962 GT1_like_5 This family 99.3 3.3E-09 7.2E-14 104.1 30.1 111 343-467 253-369 (371)
49 PF03033 Glyco_transf_28: Glyc 99.3 4.5E-13 9.8E-18 112.0 0.4 126 7-149 1-133 (139)
50 cd03800 GT1_Sucrose_synthase T 99.3 4.7E-09 1E-13 104.0 28.5 335 15-443 21-376 (398)
51 cd03794 GT1_wbuB_like This fam 99.3 6E-09 1.3E-13 102.3 28.9 146 283-448 219-378 (394)
52 cd03808 GT1_cap1E_like This fa 99.3 1.5E-08 3.3E-13 98.1 31.0 324 6-444 1-338 (359)
53 cd03817 GT1_UGDG_like This fam 99.3 8.6E-09 1.9E-13 100.6 29.5 135 284-438 202-346 (374)
54 cd03801 GT1_YqgM_like This fam 99.2 1.3E-08 2.8E-13 98.9 28.8 341 15-465 14-372 (374)
55 cd03820 GT1_amsD_like This fam 99.2 2.2E-08 4.8E-13 96.5 28.5 95 342-450 234-334 (348)
56 TIGR03449 mycothiol_MshA UDP-N 99.2 1.6E-07 3.5E-12 93.5 34.0 112 342-467 282-400 (405)
57 cd03818 GT1_ExpC_like This fam 99.2 4.9E-08 1.1E-12 96.8 29.9 91 342-444 280-375 (396)
58 PRK10307 putative glycosyl tra 99.2 3.1E-07 6.7E-12 91.6 35.2 116 343-470 284-409 (412)
59 cd03798 GT1_wlbH_like This fam 99.2 8.7E-08 1.9E-12 93.3 30.7 348 14-467 13-375 (377)
60 cd03822 GT1_ecORF704_like This 99.1 1.3E-07 2.9E-12 92.2 29.0 109 342-465 246-364 (366)
61 cd03816 GT1_ALG1_like This fam 99.1 2.6E-07 5.5E-12 92.1 31.2 123 3-145 2-129 (415)
62 TIGR00236 wecB UDP-N-acetylglu 99.1 3.6E-09 7.8E-14 103.7 16.7 156 284-467 198-362 (365)
63 cd03795 GT1_like_4 This family 99.1 1.5E-07 3.3E-12 91.7 28.1 142 285-444 192-341 (357)
64 cd03786 GT1_UDP-GlcNAc_2-Epime 99.1 8.1E-09 1.8E-13 101.2 18.4 140 283-442 198-344 (363)
65 PRK05749 3-deoxy-D-manno-octul 99.1 1.8E-08 3.9E-13 100.9 21.1 110 345-466 304-421 (425)
66 cd03825 GT1_wcfI_like This fam 99.1 3.5E-07 7.6E-12 89.4 29.5 111 343-467 244-363 (365)
67 cd03821 GT1_Bme6_like This fam 99.0 5.8E-07 1.3E-11 87.6 29.5 107 342-462 261-373 (375)
68 cd03811 GT1_WabH_like This fam 99.0 2.3E-07 5E-12 89.4 25.2 89 342-444 245-341 (353)
69 cd03796 GT1_PIG-A_like This fa 99.0 9.3E-07 2E-11 87.7 29.7 77 342-431 249-332 (398)
70 cd04951 GT1_WbdM_like This fam 99.0 5E-07 1.1E-11 88.1 27.0 109 342-465 244-357 (360)
71 cd03805 GT1_ALG2_like This fam 99.0 1.7E-06 3.7E-11 85.7 30.0 85 342-441 279-370 (392)
72 cd03799 GT1_amsK_like This is 99.0 1.6E-06 3.6E-11 84.3 29.3 85 342-440 235-332 (355)
73 TIGR02468 sucrsPsyn_pln sucros 98.9 2.3E-06 4.9E-11 91.4 31.5 182 270-467 467-669 (1050)
74 cd05844 GT1_like_7 Glycosyltra 98.9 1.6E-06 3.4E-11 85.0 28.4 87 342-442 244-343 (367)
75 TIGR02472 sucr_P_syn_N sucrose 98.9 2.9E-06 6.2E-11 85.3 30.2 112 342-465 316-437 (439)
76 PF04007 DUF354: Protein of un 98.9 4.7E-07 1E-11 85.9 22.9 109 5-145 1-111 (335)
77 cd03807 GT1_WbnK_like This fam 98.9 3.1E-06 6.8E-11 82.1 27.8 106 343-464 251-362 (365)
78 cd03819 GT1_WavL_like This fam 98.9 2.7E-06 5.8E-11 82.8 27.3 134 284-431 185-329 (355)
79 cd03802 GT1_AviGT4_like This f 98.9 3.2E-06 7E-11 81.6 27.3 154 285-465 172-333 (335)
80 PRK14089 ipid-A-disaccharide s 98.8 3E-07 6.6E-12 87.9 17.9 161 284-463 168-345 (347)
81 cd04955 GT1_like_6 This family 98.8 1.4E-05 2.9E-10 78.1 29.2 154 287-465 196-361 (363)
82 PLN02846 digalactosyldiacylgly 98.8 8.8E-06 1.9E-10 80.7 27.3 99 347-467 288-390 (462)
83 PLN02275 transferase, transfer 98.8 1.3E-05 2.7E-10 78.8 28.5 127 1-146 1-135 (371)
84 TIGR03568 NeuC_NnaA UDP-N-acet 98.7 9.1E-07 2E-11 86.2 19.1 131 283-431 201-338 (365)
85 PRK09922 UDP-D-galactose:(gluc 98.7 7.9E-06 1.7E-10 79.9 25.3 131 285-432 181-324 (359)
86 TIGR03087 stp1 sugar transfera 98.7 2.5E-06 5.4E-11 84.7 21.6 110 341-466 278-394 (397)
87 TIGR02470 sucr_synth sucrose s 98.7 5.4E-05 1.2E-09 79.4 31.7 90 342-443 618-721 (784)
88 cd03812 GT1_CapH_like This fam 98.7 7.8E-06 1.7E-10 79.7 24.7 89 342-445 248-341 (358)
89 cd03809 GT1_mtfB_like This fam 98.7 7.8E-06 1.7E-10 79.6 24.4 106 341-462 251-363 (365)
90 TIGR03088 stp2 sugar transfera 98.7 1.7E-05 3.8E-10 77.9 26.6 111 343-467 255-371 (374)
91 TIGR02149 glgA_Coryne glycogen 98.6 3.5E-05 7.7E-10 76.1 27.7 167 285-467 202-385 (388)
92 PLN00142 sucrose synthase 98.6 2.4E-05 5.1E-10 82.0 26.4 89 343-445 642-746 (815)
93 PRK15427 colanic acid biosynth 98.6 5.7E-05 1.2E-09 75.0 28.4 113 342-467 278-404 (406)
94 cd03792 GT1_Trehalose_phosphor 98.5 7.6E-05 1.6E-09 73.3 26.4 110 342-467 251-370 (372)
95 cd03804 GT1_wbaZ_like This fam 98.5 2.8E-05 6.1E-10 75.7 22.3 136 286-445 197-337 (351)
96 COG1519 KdtA 3-deoxy-D-manno-o 98.5 2.5E-05 5.5E-10 74.5 20.6 307 14-444 58-395 (419)
97 PRK15179 Vi polysaccharide bio 98.5 0.0003 6.6E-09 73.6 29.3 111 342-464 573-689 (694)
98 cd03791 GT1_Glycogen_synthase_ 98.5 0.00055 1.2E-08 69.7 31.0 134 284-431 296-441 (476)
99 PLN02949 transferase, transfer 98.4 0.0021 4.5E-08 64.7 33.4 111 342-468 334-456 (463)
100 cd04950 GT1_like_1 Glycosyltra 98.4 0.00052 1.1E-08 67.5 28.5 109 342-468 253-371 (373)
101 PRK01021 lpxB lipid-A-disaccha 98.4 0.00024 5.1E-09 71.9 25.4 268 104-453 298-593 (608)
102 cd03806 GT1_ALG11_like This fa 98.3 0.0017 3.6E-08 64.9 29.8 78 342-431 304-391 (419)
103 PF02350 Epimerase_2: UDP-N-ac 98.3 5.5E-06 1.2E-10 79.9 11.5 137 281-443 178-326 (346)
104 KOG3349 Predicted glycosyltran 98.3 1.3E-06 2.9E-11 70.1 5.6 119 285-412 5-135 (170)
105 PRK00654 glgA glycogen synthas 98.3 0.0014 3.1E-08 66.4 28.1 166 284-468 282-462 (466)
106 PLN02501 digalactosyldiacylgly 98.1 0.015 3.4E-07 59.8 31.6 101 344-466 602-707 (794)
107 COG0381 WecB UDP-N-acetylgluco 98.1 9.7E-05 2.1E-09 70.0 14.5 158 284-468 205-370 (383)
108 TIGR02095 glgA glycogen/starch 98.0 0.017 3.7E-07 58.8 30.5 162 285-467 292-471 (473)
109 PRK10125 putative glycosyl tra 98.0 0.0072 1.6E-07 60.0 26.8 116 285-427 242-366 (405)
110 COG0763 LpxB Lipid A disacchar 98.0 0.0017 3.6E-08 61.6 20.6 221 219-466 133-379 (381)
111 cd04949 GT1_gtfA_like This fam 98.0 0.00071 1.5E-08 66.4 19.2 89 343-442 261-352 (372)
112 PF00534 Glycos_transf_1: Glyc 97.9 5.8E-05 1.3E-09 65.2 9.3 91 342-446 72-169 (172)
113 PF02684 LpxB: Lipid-A-disacch 97.9 0.00073 1.6E-08 65.3 17.5 173 247-441 152-346 (373)
114 PLN02316 synthase/transferase 97.9 0.06 1.3E-06 58.7 33.1 82 343-431 900-997 (1036)
115 PRK15484 lipopolysaccharide 1, 97.9 0.00073 1.6E-08 66.6 17.3 113 343-468 257-377 (380)
116 COG5017 Uncharacterized conser 97.9 9.3E-05 2E-09 58.5 8.0 126 286-431 2-141 (161)
117 PRK09814 beta-1,6-galactofuran 97.7 0.0073 1.6E-07 58.3 21.3 110 343-465 207-332 (333)
118 TIGR02918 accessory Sec system 97.7 0.025 5.4E-07 57.6 25.0 118 342-468 375-499 (500)
119 cd01635 Glycosyltransferase_GT 97.6 0.0099 2.1E-07 53.2 19.6 48 342-391 160-215 (229)
120 cd04946 GT1_AmsK_like This fam 97.6 0.0011 2.3E-08 66.1 13.9 140 284-443 230-385 (407)
121 PF13692 Glyco_trans_1_4: Glyc 97.6 0.00028 6.1E-09 58.1 8.1 79 342-431 52-134 (135)
122 PF13844 Glyco_transf_41: Glyc 97.5 0.0006 1.3E-08 67.3 9.4 172 282-467 283-465 (468)
123 PRK14099 glycogen synthase; Pr 97.4 0.18 3.9E-06 51.3 31.4 112 344-467 351-477 (485)
124 TIGR02193 heptsyl_trn_I lipopo 97.4 0.013 2.9E-07 56.1 17.6 131 283-430 179-319 (319)
125 cd03813 GT1_like_3 This family 97.2 0.012 2.7E-07 59.7 15.5 92 342-447 353-454 (475)
126 PRK15490 Vi polysaccharide bio 97.1 0.31 6.8E-06 49.6 23.9 65 342-412 454-523 (578)
127 PF06722 DUF1205: Protein of u 96.8 0.002 4.3E-08 49.3 4.7 62 271-334 28-94 (97)
128 PF13477 Glyco_trans_4_2: Glyc 96.7 0.019 4E-07 47.4 10.4 103 6-145 1-107 (139)
129 PHA01633 putative glycosyl tra 96.7 0.036 7.8E-07 53.0 13.2 100 343-449 201-324 (335)
130 COG1817 Uncharacterized protei 96.7 0.25 5.5E-06 45.6 17.7 102 14-148 9-115 (346)
131 PRK10422 lipopolysaccharide co 96.6 0.41 8.9E-06 46.6 20.0 109 1-142 1-113 (352)
132 PHA01630 putative group 1 glyc 96.3 0.14 2.9E-06 49.4 14.9 110 350-467 197-329 (331)
133 TIGR02201 heptsyl_trn_III lipo 96.3 0.27 5.9E-06 47.6 17.2 105 6-142 1-108 (344)
134 PF13579 Glyco_trans_4_4: Glyc 96.1 0.0078 1.7E-07 50.6 4.6 95 20-145 6-104 (160)
135 PRK14098 glycogen synthase; Pr 96.0 0.33 7.2E-06 49.5 16.3 117 343-468 362-485 (489)
136 PRK10017 colanic acid biosynth 95.9 0.17 3.6E-06 50.3 13.6 166 274-450 225-408 (426)
137 PF01975 SurE: Survival protei 95.7 0.063 1.4E-06 47.1 8.4 119 5-146 1-134 (196)
138 PRK10964 ADP-heptose:LPS hepto 95.6 0.76 1.6E-05 44.0 16.3 45 5-49 1-47 (322)
139 PRK10916 ADP-heptose:LPS hepto 95.5 1.3 2.8E-05 43.0 17.6 103 5-142 1-106 (348)
140 COG3914 Spy Predicted O-linked 95.3 0.18 4E-06 50.4 10.8 136 281-427 427-573 (620)
141 PF06258 Mito_fiss_Elm1: Mitoc 95.0 1.3 2.9E-05 42.0 15.6 40 351-391 220-259 (311)
142 cd03789 GT1_LPS_heptosyltransf 94.8 2.6 5.7E-05 39.3 17.1 44 6-49 1-46 (279)
143 TIGR02195 heptsyl_trn_II lipop 94.6 3.6 7.7E-05 39.6 18.0 101 6-141 1-104 (334)
144 PLN02939 transferase, transfer 94.4 1.5 3.2E-05 47.5 15.7 83 342-431 836-930 (977)
145 PF13524 Glyco_trans_1_2: Glyc 94.0 0.33 7.1E-06 36.7 7.4 82 368-463 9-91 (92)
146 TIGR02919 accessory Sec system 93.9 1.8 3.9E-05 43.3 14.4 138 282-449 282-425 (438)
147 TIGR03713 acc_sec_asp1 accesso 93.8 0.41 9E-06 49.0 9.9 103 343-464 409-517 (519)
148 PF08660 Alg14: Oligosaccharid 93.7 0.25 5.5E-06 42.3 7.0 117 10-145 3-129 (170)
149 KOG4626 O-linked N-acetylgluco 93.6 0.29 6.4E-06 49.3 8.0 127 282-411 757-889 (966)
150 PF12000 Glyco_trans_4_3: Gkyc 93.6 1.3 2.8E-05 37.8 11.0 94 30-145 1-96 (171)
151 COG0859 RfaF ADP-heptose:LPS h 93.6 7.3 0.00016 37.5 17.7 105 4-142 1-107 (334)
152 COG0496 SurE Predicted acid ph 93.0 1.8 4E-05 39.2 11.4 113 5-146 1-126 (252)
153 PRK13932 stationary phase surv 92.4 3.6 7.9E-05 37.6 12.7 118 2-145 3-133 (257)
154 COG0438 RfaG Glycosyltransfera 92.1 7.5 0.00016 36.5 15.8 113 342-468 256-376 (381)
155 PF13439 Glyco_transf_4: Glyco 92.0 1.4 3.1E-05 37.3 9.5 30 14-43 11-40 (177)
156 COG3660 Predicted nucleoside-d 90.6 13 0.00029 33.8 17.1 38 349-387 234-271 (329)
157 TIGR00715 precor6x_red precorr 89.3 4.1 8.8E-05 37.5 10.1 39 107-145 56-100 (256)
158 PRK13933 stationary phase surv 89.2 10 0.00022 34.7 12.5 40 5-46 1-40 (253)
159 TIGR02400 trehalose_OtsA alpha 88.8 2.8 6.2E-05 42.2 9.6 103 348-466 341-454 (456)
160 PRK13935 stationary phase surv 88.1 12 0.00027 34.1 12.2 41 5-47 1-41 (253)
161 cd03788 GT1_TPS Trehalose-6-Ph 87.5 2 4.4E-05 43.4 7.7 99 347-463 345-456 (460)
162 PRK00346 surE 5'(3')-nucleotid 87.3 14 0.00031 33.8 12.2 111 5-145 1-124 (250)
163 KOG2941 Beta-1,4-mannosyltrans 87.0 29 0.00062 33.1 24.1 127 1-150 9-142 (444)
164 COG0003 ArsA Predicted ATPase 86.3 5.8 0.00013 37.8 9.5 41 5-45 2-43 (322)
165 PF02951 GSH-S_N: Prokaryotic 85.4 1.3 2.9E-05 35.2 4.1 40 5-44 1-43 (119)
166 COG4370 Uncharacterized protei 85.4 2.4 5.2E-05 39.2 6.1 105 349-468 301-409 (412)
167 TIGR00087 surE 5'/3'-nucleotid 84.6 13 0.00029 33.8 10.7 115 5-145 1-128 (244)
168 PRK13934 stationary phase surv 84.1 23 0.00051 32.6 12.0 40 5-46 1-40 (266)
169 PRK02797 4-alpha-L-fucosyltran 83.6 10 0.00022 35.6 9.5 134 285-427 146-289 (322)
170 PF07429 Glyco_transf_56: 4-al 83.4 7.3 0.00016 37.1 8.5 139 285-431 185-332 (360)
171 PRK13931 stationary phase surv 83.0 16 0.00035 33.6 10.6 98 21-145 16-129 (261)
172 COG1618 Predicted nucleotide k 82.6 11 0.00023 31.8 8.2 55 4-66 5-59 (179)
173 PRK13789 phosphoribosylamine-- 82.3 4.3 9.3E-05 40.6 7.2 38 1-43 1-38 (426)
174 PLN03063 alpha,alpha-trehalose 82.1 9.2 0.0002 41.6 10.0 103 350-467 363-476 (797)
175 PF02441 Flavoprotein: Flavopr 81.8 1.4 3E-05 35.8 2.9 44 5-49 1-44 (129)
176 PF02571 CbiJ: Precorrin-6x re 81.4 3.2 7E-05 38.0 5.5 40 106-145 56-101 (249)
177 cd03793 GT1_Glycogen_synthase_ 80.7 4.9 0.00011 41.3 6.8 76 353-431 468-551 (590)
178 PRK02261 methylaspartate mutas 77.6 4.9 0.00011 33.0 4.9 41 3-43 2-42 (137)
179 PRK08305 spoVFB dipicolinate s 77.0 3.6 7.8E-05 36.0 4.1 45 2-46 3-47 (196)
180 PF06925 MGDG_synth: Monogalac 77.0 7.4 0.00016 33.2 6.1 43 103-145 76-124 (169)
181 PRK09620 hypothetical protein; 76.8 32 0.00069 31.1 10.3 38 4-41 3-52 (229)
182 COG2910 Putative NADH-flavin r 75.9 3.2 7E-05 35.5 3.4 35 5-43 1-35 (211)
183 PF05159 Capsule_synth: Capsul 75.4 12 0.00026 34.7 7.6 79 304-389 146-226 (269)
184 cd00532 MGS-like MGS-like doma 75.3 10 0.00022 29.8 6.0 84 17-142 10-104 (112)
185 KOG0853 Glycosyltransferase [C 74.9 6.2 0.00013 39.6 5.6 62 373-444 381-442 (495)
186 PRK06718 precorrin-2 dehydroge 74.3 61 0.0013 28.6 16.1 146 283-452 11-165 (202)
187 PF01075 Glyco_transf_9: Glyco 72.6 14 0.0003 33.6 7.2 99 282-387 104-208 (247)
188 cd00561 CobA_CobO_BtuR ATP:cor 72.1 34 0.00073 28.9 8.6 100 6-126 4-105 (159)
189 PF04464 Glyphos_transf: CDP-G 71.8 4.7 0.0001 39.4 4.0 98 343-450 252-352 (369)
190 TIGR00708 cobA cob(I)alamin ad 71.5 43 0.00093 28.7 9.2 100 6-126 7-107 (173)
191 PRK02155 ppnK NAD(+)/NADH kina 70.8 20 0.00043 33.7 7.8 54 358-432 62-119 (291)
192 cd02067 B12-binding B12 bindin 70.5 6.6 0.00014 31.2 4.0 36 6-41 1-36 (119)
193 PF00731 AIRC: AIR carboxylase 70.4 25 0.00054 29.3 7.3 138 285-451 2-148 (150)
194 smart00851 MGS MGS-like domain 70.0 15 0.00033 27.4 5.6 35 107-141 46-89 (90)
195 COG0041 PurE Phosphoribosylcar 69.9 63 0.0014 26.8 9.7 136 285-450 4-149 (162)
196 PRK05986 cob(I)alamin adenolsy 69.9 40 0.00087 29.4 8.8 100 6-126 24-125 (191)
197 PRK08057 cobalt-precorrin-6x r 69.8 18 0.0004 33.0 7.1 40 106-145 55-100 (248)
198 PF02142 MGS: MGS-like domain 68.8 1.9 4.1E-05 32.8 0.4 84 21-141 2-94 (95)
199 PRK06849 hypothetical protein; 68.7 9.7 0.00021 37.6 5.5 38 1-42 1-38 (389)
200 PF12146 Hydrolase_4: Putative 67.7 9.9 0.00022 27.7 4.0 34 5-38 16-49 (79)
201 PF02310 B12-binding: B12 bind 67.1 12 0.00025 29.7 4.8 35 5-39 1-35 (121)
202 TIGR01470 cysG_Nterm siroheme 66.8 92 0.002 27.5 16.0 148 283-451 10-164 (205)
203 PRK05234 mgsA methylglyoxal sy 66.6 51 0.0011 27.2 8.4 100 1-143 1-112 (142)
204 TIGR02015 BchY chlorophyllide 66.5 20 0.00043 35.8 7.2 32 110-144 349-380 (422)
205 PRK14501 putative bifunctional 66.0 19 0.0004 38.9 7.4 111 346-468 345-462 (726)
206 cd07037 TPP_PYR_MenD Pyrimidin 65.9 22 0.00047 30.2 6.3 27 362-388 61-93 (162)
207 PRK05562 precorrin-2 dehydroge 65.4 1E+02 0.0022 27.6 12.5 151 276-452 20-180 (223)
208 cd00550 ArsA_ATPase Oxyanion-t 64.9 15 0.00031 33.9 5.5 36 8-43 4-39 (254)
209 cd01424 MGS_CPS_II Methylglyox 64.1 21 0.00046 27.8 5.6 84 16-142 10-100 (110)
210 TIGR02398 gluc_glyc_Psyn gluco 63.9 1.1E+02 0.0023 31.3 11.8 110 345-469 364-483 (487)
211 PF00551 Formyl_trans_N: Formy 63.8 14 0.0003 31.9 4.9 43 104-146 67-110 (181)
212 COG1703 ArgK Putative periplas 62.2 1.1E+02 0.0024 28.8 10.4 112 5-143 52-172 (323)
213 COG2185 Sbm Methylmalonyl-CoA 62.2 14 0.0003 30.4 4.2 38 3-40 11-48 (143)
214 PF04127 DFP: DNA / pantothena 62.0 8.8 0.00019 33.4 3.3 38 5-42 4-53 (185)
215 PRK03359 putative electron tra 61.8 16 0.00034 33.7 5.0 40 107-146 103-148 (256)
216 COG2109 BtuR ATP:corrinoid ade 61.8 49 0.0011 28.7 7.5 99 7-126 31-132 (198)
217 PF09314 DUF1972: Domain of un 61.4 19 0.00042 31.2 5.2 47 15-67 16-63 (185)
218 COG0299 PurN Folate-dependent 60.3 1.2E+02 0.0025 26.6 11.5 118 300-447 67-186 (200)
219 PRK12342 hypothetical protein; 60.0 17 0.00037 33.3 4.9 40 107-146 100-145 (254)
220 KOG3339 Predicted glycosyltran 59.3 41 0.00089 28.9 6.5 24 8-31 41-64 (211)
221 PRK04885 ppnK inorganic polyph 58.2 18 0.00038 33.5 4.8 52 360-432 36-93 (265)
222 COG4394 Uncharacterized protei 58.1 78 0.0017 29.4 8.5 113 344-465 239-367 (370)
223 PRK14098 glycogen synthase; Pr 58.1 15 0.00033 37.4 4.8 38 5-42 6-49 (489)
224 TIGR00725 conserved hypothetic 58.0 48 0.001 28.0 7.0 99 271-389 21-123 (159)
225 PRK06732 phosphopantothenate-- 57.4 17 0.00036 32.9 4.4 37 5-41 1-49 (229)
226 PRK01231 ppnK inorganic polyph 56.9 49 0.0011 31.2 7.6 53 359-432 62-118 (295)
227 PRK04539 ppnK inorganic polyph 56.8 28 0.00061 32.8 5.9 57 355-432 64-124 (296)
228 PF07355 GRDB: Glycine/sarcosi 56.6 21 0.00045 34.1 4.9 48 96-143 60-117 (349)
229 TIGR02852 spore_dpaB dipicolin 55.6 15 0.00032 32.0 3.6 39 6-44 2-40 (187)
230 PRK05920 aromatic acid decarbo 55.5 10 0.00023 33.4 2.7 42 5-47 4-45 (204)
231 PRK07313 phosphopantothenoylcy 55.4 12 0.00027 32.4 3.1 42 6-48 3-44 (182)
232 PF10835 DUF2573: Protein of u 54.9 63 0.0014 23.2 5.8 50 420-469 9-72 (82)
233 COG1090 Predicted nucleoside-d 54.6 83 0.0018 29.2 8.2 29 13-43 5-33 (297)
234 PRK12446 undecaprenyldiphospho 53.4 77 0.0017 30.8 8.6 96 285-387 4-120 (352)
235 TIGR02853 spore_dpaA dipicolin 53.0 2E+02 0.0043 27.0 16.6 104 19-143 11-119 (287)
236 PRK07206 hypothetical protein; 52.6 64 0.0014 32.0 8.2 34 106-139 60-95 (416)
237 cd07039 TPP_PYR_POX Pyrimidine 52.5 51 0.0011 27.9 6.4 28 362-389 64-97 (164)
238 PRK03372 ppnK inorganic polyph 52.2 30 0.00064 32.8 5.3 54 358-432 71-128 (306)
239 PLN02929 NADH kinase 52.2 24 0.00052 33.2 4.6 64 360-432 65-137 (301)
240 PRK14077 pnk inorganic polypho 52.1 26 0.00057 32.8 4.9 56 356-432 61-120 (287)
241 PLN02695 GDP-D-mannose-3',5'-e 51.8 25 0.00054 34.4 5.0 36 1-40 18-53 (370)
242 PRK01911 ppnK inorganic polyph 50.7 29 0.00064 32.6 5.0 56 356-432 61-120 (292)
243 PLN02470 acetolactate synthase 50.5 41 0.00088 35.3 6.6 92 289-388 2-109 (585)
244 PF05693 Glycogen_syn: Glycoge 50.3 35 0.00075 35.3 5.7 93 351-449 461-566 (633)
245 PRK02231 ppnK inorganic polyph 50.2 20 0.00043 33.3 3.8 59 352-431 35-97 (272)
246 cd02070 corrinoid_protein_B12- 48.3 37 0.00081 29.9 5.1 38 4-41 82-119 (201)
247 PF05728 UPF0227: Uncharacteri 48.3 39 0.00084 29.4 5.1 43 106-148 47-92 (187)
248 CHL00076 chlB photochlorophyll 46.8 30 0.00064 35.6 4.7 35 107-144 365-399 (513)
249 PRK02649 ppnK inorganic polyph 46.7 31 0.00066 32.7 4.5 53 359-432 68-124 (305)
250 PRK03378 ppnK inorganic polyph 46.4 35 0.00075 32.2 4.8 57 355-432 59-119 (292)
251 TIGR00421 ubiX_pad polyprenyl 46.0 13 0.00028 32.2 1.8 41 7-48 2-42 (181)
252 PF02374 ArsA_ATPase: Anion-tr 45.8 24 0.00052 33.5 3.6 41 5-45 1-42 (305)
253 PRK02910 light-independent pro 45.8 33 0.00072 35.3 5.0 35 107-144 353-387 (519)
254 cd01976 Nitrogenase_MoFe_alpha 45.4 26 0.00056 35.0 4.0 35 107-144 360-394 (421)
255 PRK06029 3-octaprenyl-4-hydrox 45.3 17 0.00036 31.6 2.3 42 6-48 3-45 (185)
256 PF02702 KdpD: Osmosensitive K 45.2 37 0.00081 29.8 4.3 37 4-40 5-41 (211)
257 TIGR01278 DPOR_BchB light-inde 45.0 34 0.00073 35.2 4.9 36 107-145 355-390 (511)
258 cd03466 Nitrogenase_NifN_2 Nit 44.8 34 0.00075 34.2 4.8 36 106-144 362-397 (429)
259 TIGR01918 various_sel_PB selen 44.6 38 0.00082 33.3 4.7 49 96-144 56-114 (431)
260 PLN02939 transferase, transfer 44.6 39 0.00085 37.2 5.3 40 3-42 480-525 (977)
261 TIGR01917 gly_red_sel_B glycin 44.6 38 0.00081 33.3 4.7 49 96-144 56-114 (431)
262 cd02071 MM_CoA_mut_B12_BD meth 44.5 37 0.0008 27.1 4.1 37 6-42 1-37 (122)
263 PF02606 LpxK: Tetraacyldisacc 44.0 65 0.0014 30.9 6.3 34 10-43 43-76 (326)
264 TIGR00661 MJ1255 conserved hyp 44.0 39 0.00084 32.2 4.9 34 355-388 87-120 (321)
265 cd01965 Nitrogenase_MoFe_beta_ 43.6 36 0.00078 34.1 4.7 36 106-144 361-396 (428)
266 PF10093 DUF2331: Uncharacteri 43.4 60 0.0013 31.6 5.9 88 294-385 190-286 (374)
267 TIGR00639 PurN phosphoribosylg 43.2 1.7E+02 0.0038 25.4 8.4 107 5-146 1-110 (190)
268 PRK04940 hypothetical protein; 43.2 62 0.0014 27.9 5.4 32 116-147 60-92 (180)
269 cd07035 TPP_PYR_POX_like Pyrim 42.6 74 0.0016 26.4 5.9 26 364-389 62-93 (155)
270 cd01981 Pchlide_reductase_B Pc 42.1 40 0.00087 33.7 4.9 36 107-145 361-396 (430)
271 COG0223 Fmt Methionyl-tRNA for 41.9 36 0.00079 32.1 4.1 34 4-42 1-34 (307)
272 COG1663 LpxK Tetraacyldisaccha 41.8 50 0.0011 31.5 5.0 34 10-43 55-88 (336)
273 TIGR02700 flavo_MJ0208 archaeo 41.8 26 0.00055 31.8 3.1 43 7-49 2-46 (234)
274 PF01210 NAD_Gly3P_dh_N: NAD-d 41.7 20 0.00043 30.1 2.2 32 6-42 1-32 (157)
275 TIGR02370 pyl_corrinoid methyl 41.6 52 0.0011 28.9 4.9 40 4-43 84-123 (197)
276 TIGR01286 nifK nitrogenase mol 41.4 41 0.0009 34.5 4.8 34 108-144 429-462 (515)
277 COG2210 Peroxiredoxin family p 41.0 55 0.0012 26.7 4.4 33 10-42 9-41 (137)
278 PRK06270 homoserine dehydrogen 40.8 97 0.0021 29.9 7.1 58 352-409 80-149 (341)
279 COG2159 Predicted metal-depend 40.7 1.3E+02 0.0028 28.4 7.7 111 250-377 98-210 (293)
280 TIGR01285 nifN nitrogenase mol 40.1 47 0.001 33.3 4.9 34 107-143 364-397 (432)
281 PF04413 Glycos_transf_N: 3-De 40.1 35 0.00075 29.7 3.5 92 14-145 30-126 (186)
282 cd01141 TroA_d Periplasmic bin 39.9 48 0.001 28.5 4.5 35 110-144 63-99 (186)
283 PRK07414 cob(I)yrinic acid a,c 39.8 1.7E+02 0.0038 25.2 7.6 104 3-126 20-125 (178)
284 PRK13982 bifunctional SbtC-lik 39.4 43 0.00093 33.8 4.4 38 5-42 257-306 (475)
285 PRK01175 phosphoribosylformylg 39.3 3E+02 0.0065 25.4 9.7 35 4-41 3-37 (261)
286 PRK03501 ppnK inorganic polyph 39.2 66 0.0014 29.8 5.3 53 360-432 40-97 (264)
287 PRK05784 phosphoribosylamine-- 39.0 1.4E+02 0.003 30.6 8.1 31 5-40 1-33 (486)
288 PRK13011 formyltetrahydrofolat 39.0 3.3E+02 0.0072 25.5 11.5 73 365-447 198-272 (286)
289 COG2120 Uncharacterized protei 38.9 47 0.001 30.2 4.3 41 2-42 8-48 (237)
290 PRK08527 acetolactate synthase 38.8 1E+02 0.0022 32.2 7.4 27 362-388 67-99 (563)
291 PRK00207 sulfur transfer compl 38.5 56 0.0012 26.4 4.3 38 5-42 1-42 (128)
292 PLN02935 Bifunctional NADH kin 38.4 63 0.0014 32.8 5.4 53 359-432 262-318 (508)
293 COG2894 MinD Septum formation 38.4 56 0.0012 29.2 4.4 35 7-41 4-40 (272)
294 PHA02754 hypothetical protein; 38.4 55 0.0012 21.9 3.3 26 425-453 6-31 (67)
295 TIGR02113 coaC_strep phosphopa 38.1 30 0.00064 29.8 2.7 42 6-48 2-43 (177)
296 PRK05579 bifunctional phosphop 38.0 31 0.00068 34.1 3.2 45 3-48 5-49 (399)
297 PRK13011 formyltetrahydrofolat 38.0 1.4E+02 0.0031 27.9 7.5 36 2-40 87-124 (286)
298 cd01974 Nitrogenase_MoFe_beta 38.0 55 0.0012 32.8 5.1 35 108-145 369-403 (435)
299 PRK14075 pnk inorganic polypho 37.8 57 0.0012 30.0 4.7 51 363-432 43-94 (256)
300 PRK06067 flagellar accessory p 37.8 29 0.00062 31.4 2.8 39 6-44 27-65 (234)
301 COG0052 RpsB Ribosomal protein 37.8 66 0.0014 29.2 4.8 33 116-148 156-190 (252)
302 PRK08155 acetolactate synthase 37.8 92 0.002 32.5 6.9 81 300-388 15-109 (564)
303 COG1797 CobB Cobyrinic acid a, 37.3 99 0.0021 30.7 6.3 31 6-36 2-33 (451)
304 PF04244 DPRP: Deoxyribodipyri 37.2 33 0.00071 30.8 3.0 27 16-42 46-72 (224)
305 PRK14569 D-alanyl-alanine synt 37.1 60 0.0013 30.6 4.9 39 1-40 1-43 (296)
306 PF06180 CbiK: Cobalt chelatas 36.9 47 0.001 30.7 4.0 38 284-321 2-42 (262)
307 cd01980 Chlide_reductase_Y Chl 36.3 54 0.0012 32.7 4.7 34 109-145 343-376 (416)
308 PF05225 HTH_psq: helix-turn-h 36.3 49 0.0011 21.1 2.9 26 418-445 1-26 (45)
309 PRK13768 GTPase; Provisional 36.1 1.5E+02 0.0033 27.1 7.3 37 6-42 4-40 (253)
310 TIGR00730 conserved hypothetic 36.0 1.7E+02 0.0037 25.2 7.1 103 271-388 22-133 (178)
311 TIGR00682 lpxK tetraacyldisacc 35.7 1.9E+02 0.0041 27.5 8.0 35 10-44 36-70 (311)
312 PF02571 CbiJ: Precorrin-6x re 35.6 2.2E+02 0.0048 26.1 8.1 106 20-145 117-227 (249)
313 PRK13194 pyrrolidone-carboxyla 35.6 1.2E+02 0.0026 26.9 6.2 26 5-30 1-28 (208)
314 COG0801 FolK 7,8-dihydro-6-hyd 35.5 75 0.0016 26.8 4.6 35 285-319 3-37 (160)
315 PRK05595 replicative DNA helic 35.4 1.2E+02 0.0025 30.6 6.9 40 7-46 204-244 (444)
316 PF15092 UPF0728: Uncharacteri 35.2 1.3E+02 0.0028 22.3 5.1 43 1-43 1-49 (88)
317 PRK06276 acetolactate synthase 34.9 75 0.0016 33.3 5.7 27 362-388 64-96 (586)
318 TIGR01380 glut_syn glutathione 34.7 52 0.0011 31.3 4.1 40 5-44 1-43 (312)
319 PRK04761 ppnK inorganic polyph 34.3 33 0.00071 31.3 2.5 52 360-431 26-81 (246)
320 PRK05114 hypothetical protein; 34.3 1.4E+02 0.003 20.2 4.6 35 435-469 10-44 (59)
321 PRK09219 xanthine phosphoribos 34.2 92 0.002 27.2 5.2 42 104-145 38-81 (189)
322 COG3349 Uncharacterized conser 34.2 42 0.0009 33.9 3.4 33 5-42 1-33 (485)
323 PRK13010 purU formyltetrahydro 34.0 4E+02 0.0088 25.0 11.2 69 368-446 205-275 (289)
324 COG1066 Sms Predicted ATP-depe 33.5 28 0.0006 34.1 2.0 41 7-48 96-136 (456)
325 cd07025 Peptidase_S66 LD-Carbo 33.5 94 0.002 29.1 5.6 31 295-325 45-75 (282)
326 PRK06321 replicative DNA helic 33.4 1.9E+02 0.0042 29.4 8.0 41 7-47 229-270 (472)
327 cd02069 methionine_synthase_B1 33.4 81 0.0018 28.1 4.8 39 4-42 88-126 (213)
328 PRK13604 luxD acyl transferase 33.1 84 0.0018 29.8 5.1 35 5-39 37-71 (307)
329 PRK08760 replicative DNA helic 32.9 92 0.002 31.7 5.7 39 7-45 232-271 (476)
330 KOG2825 Putative arsenite-tran 32.8 2.3E+02 0.0049 26.1 7.3 42 4-45 18-60 (323)
331 TIGR00345 arsA arsenite-activa 32.7 84 0.0018 29.4 5.1 23 22-44 3-25 (284)
332 PRK14618 NAD(P)H-dependent gly 32.6 63 0.0014 30.9 4.4 36 1-41 1-36 (328)
333 TIGR00118 acolac_lg acetolacta 32.6 1.6E+02 0.0034 30.7 7.6 27 362-388 65-97 (558)
334 COG0143 MetG Methionyl-tRNA sy 32.5 81 0.0018 32.6 5.2 28 16-43 23-53 (558)
335 COG0503 Apt Adenine/guanine ph 32.1 1.1E+02 0.0024 26.4 5.3 37 107-143 44-82 (179)
336 PRK06249 2-dehydropantoate 2-r 32.0 59 0.0013 30.9 4.0 35 3-42 4-38 (313)
337 PF08323 Glyco_transf_5: Starc 31.9 37 0.0008 31.0 2.5 26 17-42 18-43 (245)
338 cd07038 TPP_PYR_PDC_IPDC_like 31.9 1.4E+02 0.0031 25.1 6.0 29 362-390 60-94 (162)
339 PRK07313 phosphopantothenoylcy 31.8 2.6E+02 0.0057 24.1 7.6 51 381-431 113-179 (182)
340 PF03701 UPF0181: Uncharacteri 31.8 1.4E+02 0.0031 19.5 4.3 35 435-469 10-44 (51)
341 cd03412 CbiK_N Anaerobic cobal 31.6 78 0.0017 25.5 4.1 38 284-321 2-41 (127)
342 TIGR03646 YtoQ_fam YtoQ family 31.6 1.8E+02 0.004 23.5 5.8 94 285-387 2-109 (144)
343 TIGR02329 propionate_PrpR prop 31.5 86 0.0019 32.3 5.3 120 15-146 36-172 (526)
344 PF13450 NAD_binding_8: NAD(P) 31.4 60 0.0013 22.7 3.0 22 21-42 8-29 (68)
345 TIGR02699 archaeo_AfpA archaeo 31.4 60 0.0013 27.9 3.5 40 7-47 2-43 (174)
346 PRK01185 ppnK inorganic polyph 31.4 67 0.0015 29.8 4.1 53 359-432 52-105 (271)
347 PRK13193 pyrrolidone-carboxyla 31.2 1.6E+02 0.0036 26.1 6.3 26 5-30 1-28 (209)
348 PRK00885 phosphoribosylamine-- 31.2 1.4E+02 0.003 29.8 6.6 36 107-142 53-91 (420)
349 PRK14076 pnk inorganic polypho 31.0 69 0.0015 33.5 4.6 51 363-432 350-404 (569)
350 PRK11914 diacylglycerol kinase 30.9 1.2E+02 0.0025 28.7 5.9 26 364-389 67-96 (306)
351 cd01840 SGNH_hydrolase_yrhL_li 30.9 1.1E+02 0.0025 25.1 5.2 37 284-321 52-88 (150)
352 PRK06027 purU formyltetrahydro 30.9 4.5E+02 0.0098 24.6 10.0 70 368-447 201-272 (286)
353 cd02032 Bchl_like This family 30.9 79 0.0017 29.1 4.6 38 5-42 1-38 (267)
354 CHL00072 chlL photochlorophyll 30.8 87 0.0019 29.4 4.9 40 5-44 1-40 (290)
355 PRK13059 putative lipid kinase 30.8 1.4E+02 0.003 28.1 6.3 26 364-389 59-90 (295)
356 TIGR00147 lipid kinase, YegS/R 30.7 1.8E+02 0.0039 27.2 7.1 26 364-389 60-91 (293)
357 PF00070 Pyr_redox: Pyridine n 30.6 77 0.0017 22.7 3.6 23 20-42 10-32 (80)
358 PF13460 NAD_binding_10: NADH( 30.5 55 0.0012 27.9 3.3 30 12-43 4-33 (183)
359 PRK11823 DNA repair protein Ra 30.4 65 0.0014 32.5 4.1 40 7-46 83-122 (446)
360 TIGR01862 N2-ase-Ialpha nitrog 30.4 61 0.0013 32.6 3.9 34 107-143 378-411 (443)
361 PF06506 PrpR_N: Propionate ca 30.3 25 0.00055 30.2 1.1 32 358-390 31-62 (176)
362 TIGR01007 eps_fam capsular exo 30.2 95 0.002 27.2 4.8 38 4-41 16-55 (204)
363 PF01497 Peripla_BP_2: Peripla 30.1 73 0.0016 28.5 4.2 38 110-147 54-93 (238)
364 PRK09165 replicative DNA helic 30.1 1.6E+02 0.0034 30.2 6.9 41 7-47 220-275 (497)
365 cd00861 ProRS_anticodon_short 29.8 96 0.0021 22.9 4.2 35 5-39 2-38 (94)
366 PRK08163 salicylate hydroxylas 29.6 61 0.0013 31.8 3.8 36 1-41 1-36 (396)
367 COG1737 RpiR Transcriptional r 29.6 1.4E+02 0.0029 28.0 5.9 89 271-391 121-214 (281)
368 PF05014 Nuc_deoxyrib_tr: Nucl 29.5 59 0.0013 25.4 3.0 40 354-393 56-101 (113)
369 PF09001 DUF1890: Domain of un 29.5 57 0.0012 26.5 2.8 34 14-47 9-42 (139)
370 PRK00039 ruvC Holliday junctio 29.5 1.4E+02 0.0031 25.3 5.4 46 100-145 45-105 (164)
371 cd01147 HemV-2 Metal binding p 29.4 83 0.0018 28.7 4.5 36 110-145 68-106 (262)
372 TIGR03609 S_layer_CsaB polysac 29.4 3.3E+02 0.0072 25.4 8.7 100 283-389 172-277 (298)
373 COG3195 Uncharacterized protei 29.3 68 0.0015 26.9 3.3 76 372-450 88-164 (176)
374 PF00289 CPSase_L_chain: Carba 29.2 1E+02 0.0022 24.1 4.3 67 301-378 14-89 (110)
375 PF06792 UPF0261: Uncharacteri 29.1 3.5E+02 0.0076 26.7 8.6 91 282-389 184-278 (403)
376 TIGR00959 ffh signal recogniti 28.9 1.2E+02 0.0026 30.3 5.7 40 6-45 101-141 (428)
377 PRK07773 replicative DNA helic 28.9 1.2E+02 0.0026 33.7 6.2 41 7-47 220-261 (886)
378 TIGR00521 coaBC_dfp phosphopan 28.9 42 0.00091 33.1 2.4 43 5-48 4-46 (390)
379 COG3140 Uncharacterized protei 28.8 1.8E+02 0.0039 19.3 4.5 34 436-469 11-44 (60)
380 PF01372 Melittin: Melittin; 28.5 9.7 0.00021 20.5 -1.1 17 370-386 1-17 (26)
381 TIGR01281 DPOR_bchL light-inde 28.5 93 0.002 28.6 4.7 38 5-42 1-38 (268)
382 TIGR03457 sulphoacet_xsc sulfo 28.5 1.9E+02 0.0041 30.3 7.4 27 362-388 65-97 (579)
383 PRK14478 nitrogenase molybdenu 28.5 70 0.0015 32.5 4.0 33 107-142 384-416 (475)
384 PRK06522 2-dehydropantoate 2-r 28.5 66 0.0014 30.2 3.7 31 5-40 1-31 (304)
385 PF03808 Glyco_tran_WecB: Glyc 28.4 3.7E+02 0.008 22.8 11.5 87 223-321 49-135 (172)
386 TIGR01162 purE phosphoribosyla 28.4 3.6E+02 0.0078 22.7 9.2 132 288-450 3-145 (156)
387 PF02826 2-Hacid_dh_C: D-isome 28.3 1.3E+02 0.0028 25.8 5.2 106 282-427 36-142 (178)
388 PRK06027 purU formyltetrahydro 28.1 1.1E+02 0.0025 28.6 5.1 86 2-126 87-175 (286)
389 PRK12311 rpsB 30S ribosomal pr 28.1 79 0.0017 30.2 4.0 33 116-148 152-186 (326)
390 cd01715 ETF_alpha The electron 28.1 1.2E+02 0.0027 25.6 5.0 42 104-145 71-115 (168)
391 PF00862 Sucrose_synth: Sucros 28.0 1.1E+02 0.0024 31.1 5.0 55 92-147 378-434 (550)
392 PF10649 DUF2478: Protein of u 27.9 3.7E+02 0.008 22.7 12.4 124 8-149 2-135 (159)
393 TIGR01284 alt_nitrog_alph nitr 27.9 61 0.0013 32.8 3.5 34 107-143 386-419 (457)
394 PLN00016 RNA-binding protein; 27.7 77 0.0017 31.0 4.1 36 5-42 53-90 (378)
395 PF02776 TPP_enzyme_N: Thiamin 27.6 77 0.0017 26.9 3.6 27 363-389 66-98 (172)
396 PF01012 ETF: Electron transfe 27.5 85 0.0019 26.4 3.9 42 104-145 78-122 (164)
397 PF02572 CobA_CobO_BtuR: ATP:c 27.5 1.1E+02 0.0024 26.2 4.4 100 6-126 5-106 (172)
398 cd07062 Peptidase_S66_mccF_lik 27.5 1.3E+02 0.0027 28.7 5.4 30 296-325 50-79 (308)
399 TIGR00640 acid_CoA_mut_C methy 27.5 1.2E+02 0.0026 24.6 4.5 39 3-41 1-39 (132)
400 PLN02948 phosphoribosylaminoim 27.4 3.6E+02 0.0077 28.3 9.0 84 363-451 467-558 (577)
401 PRK00994 F420-dependent methyl 27.3 1.2E+02 0.0025 27.4 4.5 43 107-149 51-99 (277)
402 PF12695 Abhydrolase_5: Alpha/ 27.2 1.4E+02 0.0031 23.8 5.1 33 7-39 1-33 (145)
403 TIGR00655 PurU formyltetrahydr 27.1 5.2E+02 0.011 24.1 10.2 69 368-446 196-266 (280)
404 PRK03708 ppnK inorganic polyph 27.0 46 0.00099 31.1 2.2 50 364-432 60-112 (277)
405 CHL00194 ycf39 Ycf39; Provisio 27.0 96 0.0021 29.4 4.6 33 5-41 1-33 (317)
406 PRK12815 carB carbamoyl phosph 26.9 5.2E+02 0.011 29.5 10.8 42 1-42 1-51 (1068)
407 PF03853 YjeF_N: YjeF-related 26.9 1.1E+02 0.0024 26.0 4.4 36 3-39 24-59 (169)
408 PF03721 UDPG_MGDP_dh_N: UDP-g 26.8 1E+02 0.0022 26.8 4.2 32 5-41 1-32 (185)
409 PF03641 Lysine_decarbox: Poss 26.7 2.2E+02 0.0048 23.0 6.0 80 302-388 2-91 (133)
410 PRK07710 acetolactate synthase 26.6 1.8E+02 0.0039 30.4 6.8 27 362-388 79-111 (571)
411 TIGR00877 purD phosphoribosyla 26.5 3.5E+02 0.0075 26.9 8.7 34 5-43 1-34 (423)
412 KOG0574 STE20-like serine/thre 26.5 1.5E+02 0.0032 27.9 5.2 63 354-451 95-157 (502)
413 COG0665 DadA Glycine/D-amino a 26.5 78 0.0017 30.8 4.0 37 1-42 1-37 (387)
414 COG4668 MtlA Mannitol/fructose 26.5 3.4E+02 0.0073 22.4 6.7 67 364-442 57-125 (142)
415 PRK08322 acetolactate synthase 26.5 1.1E+02 0.0024 31.7 5.2 27 362-388 64-96 (547)
416 PF10933 DUF2827: Protein of u 26.4 6.1E+02 0.013 24.7 9.6 104 343-466 253-363 (364)
417 TIGR02655 circ_KaiC circadian 26.4 98 0.0021 31.6 4.7 43 6-48 265-307 (484)
418 PRK05636 replicative DNA helic 26.4 1.3E+02 0.0028 30.9 5.5 39 7-45 268-307 (505)
419 PRK08979 acetolactate synthase 26.4 1.8E+02 0.004 30.3 6.8 27 362-388 68-100 (572)
420 PRK13054 lipid kinase; Reviewe 26.3 1.5E+02 0.0033 27.8 5.8 27 363-389 58-92 (300)
421 PF02844 GARS_N: Phosphoribosy 26.2 1.2E+02 0.0025 23.4 3.9 36 106-141 52-90 (100)
422 TIGR03878 thermo_KaiC_2 KaiC d 26.1 1.1E+02 0.0023 28.2 4.6 36 7-42 39-74 (259)
423 COG2874 FlaH Predicted ATPases 26.1 52 0.0011 29.3 2.2 92 14-129 38-136 (235)
424 cd01714 ETF_beta The electron 26.1 1.2E+02 0.0025 26.8 4.5 40 105-144 97-142 (202)
425 PRK07282 acetolactate synthase 26.1 2.3E+02 0.0051 29.5 7.5 27 362-388 74-106 (566)
426 cd01977 Nitrogenase_VFe_alpha 26.0 77 0.0017 31.6 3.8 33 108-143 350-382 (415)
427 PF07015 VirC1: VirC1 protein; 26.0 1.4E+02 0.0031 26.9 5.0 33 13-45 11-43 (231)
428 cd03818 GT1_ExpC_like This fam 25.9 2.1E+02 0.0046 28.0 6.9 26 298-323 10-35 (396)
429 cd01143 YvrC Periplasmic bindi 25.8 1.2E+02 0.0026 26.0 4.7 36 110-145 54-90 (195)
430 PRK12921 2-dehydropantoate 2-r 25.5 80 0.0017 29.7 3.7 32 5-41 1-32 (305)
431 PRK13234 nifH nitrogenase redu 25.4 1.3E+02 0.0029 28.2 5.1 42 1-42 1-42 (295)
432 PRK13869 plasmid-partitioning 25.4 1.1E+02 0.0025 30.3 4.8 39 4-42 120-160 (405)
433 PRK02645 ppnK inorganic polyph 25.4 56 0.0012 31.0 2.5 29 359-389 57-89 (305)
434 PRK13185 chlL protochlorophyll 25.2 1.2E+02 0.0027 27.9 4.8 40 1-42 1-40 (270)
435 COG4081 Uncharacterized protei 25.2 1.3E+02 0.0028 24.2 4.0 33 11-43 11-43 (148)
436 TIGR02482 PFKA_ATP 6-phosphofr 25.1 74 0.0016 30.1 3.3 41 355-395 85-129 (301)
437 KOG1344 Predicted histone deac 24.8 2.2E+02 0.0048 25.5 5.8 44 105-148 237-302 (324)
438 PRK06487 glycerate dehydrogena 24.8 2.4E+02 0.0052 26.9 6.8 61 282-372 148-208 (317)
439 TIGR03880 KaiC_arch_3 KaiC dom 24.8 89 0.0019 27.9 3.7 41 7-47 19-59 (224)
440 PRK07449 2-succinyl-5-enolpyru 24.6 1.7E+02 0.0036 30.6 6.1 81 299-388 10-105 (568)
441 PTZ00123 phosphoglycerate muta 24.6 1.1E+02 0.0024 27.6 4.3 62 365-431 166-230 (236)
442 COG2099 CobK Precorrin-6x redu 24.4 1.6E+02 0.0035 26.9 5.0 41 105-145 55-101 (257)
443 PF03401 TctC: Tripartite tric 24.4 1E+02 0.0022 28.7 4.1 58 387-450 189-247 (274)
444 PRK13055 putative lipid kinase 24.3 2.7E+02 0.0059 26.7 7.1 26 364-389 62-93 (334)
445 PRK13337 putative lipid kinase 24.2 2.3E+02 0.0051 26.7 6.6 27 363-389 59-91 (304)
446 PRK09107 acetolactate synthase 24.2 1.9E+02 0.0041 30.5 6.4 27 362-388 75-107 (595)
447 PF14626 RNase_Zc3h12a_2: Zc3h 24.2 85 0.0019 24.8 2.8 31 18-48 9-39 (122)
448 TIGR01283 nifE nitrogenase mol 24.1 1.1E+02 0.0023 31.0 4.5 34 107-143 386-419 (456)
449 PRK12815 carB carbamoyl phosph 24.1 5.5E+02 0.012 29.4 10.4 39 4-42 555-599 (1068)
450 cd02065 B12-binding_like B12 b 24.1 1.3E+02 0.0027 23.7 4.1 34 7-40 2-35 (125)
451 COG2086 FixA Electron transfer 23.9 1.5E+02 0.0033 27.3 4.9 41 105-145 100-146 (260)
452 cd01425 RPS2 Ribosomal protein 23.9 1.4E+02 0.0031 26.0 4.7 33 115-147 126-160 (193)
453 TIGR01860 VNFD nitrogenase van 23.8 95 0.0021 31.5 4.0 30 109-141 390-419 (461)
454 PLN02293 adenine phosphoribosy 23.8 2.1E+02 0.0046 24.8 5.6 41 103-143 49-91 (187)
455 PRK14619 NAD(P)H-dependent gly 23.7 98 0.0021 29.3 3.9 34 3-41 3-36 (308)
456 COG1553 DsrE Uncharacterized c 23.6 1.9E+02 0.0042 23.1 4.7 38 5-42 1-42 (126)
457 cd00501 Peptidase_C15 Pyroglut 23.6 2.6E+02 0.0056 24.4 6.2 27 5-31 1-29 (194)
458 PF03720 UDPG_MGDP_dh_C: UDP-g 23.6 98 0.0021 23.9 3.2 23 19-41 17-39 (106)
459 PRK05246 glutathione synthetas 23.5 1E+02 0.0023 29.3 4.0 40 5-44 2-44 (316)
460 PRK02399 hypothetical protein; 23.4 6.3E+02 0.014 25.0 9.1 90 282-388 185-278 (406)
461 PRK10490 sensor protein KdpD; 23.2 1E+02 0.0022 34.3 4.4 37 3-39 23-59 (895)
462 PRK06882 acetolactate synthase 23.2 1.5E+02 0.0033 30.9 5.5 27 362-388 68-100 (574)
463 PRK07525 sulfoacetaldehyde ace 23.2 1.8E+02 0.0039 30.5 6.1 27 362-388 69-101 (588)
464 COG2861 Uncharacterized protei 23.1 1.6E+02 0.0035 26.6 4.7 43 100-142 132-178 (250)
465 TIGR01744 XPRTase xanthine pho 23.1 1.9E+02 0.004 25.3 5.2 42 104-145 38-81 (191)
466 COG1484 DnaC DNA replication p 23.0 67 0.0015 29.5 2.5 44 6-49 107-150 (254)
467 cd01985 ETF The electron trans 23.0 1.5E+02 0.0033 25.3 4.7 41 105-145 80-123 (181)
468 cd01971 Nitrogenase_VnfN_like 22.9 1.3E+02 0.0029 30.1 4.8 36 107-145 358-397 (427)
469 smart00046 DAGKc Diacylglycero 22.9 64 0.0014 25.8 2.1 27 364-390 52-87 (124)
470 TIGR03837 efp_adjacent_2 conse 22.9 1.1E+02 0.0023 29.7 3.8 93 294-389 188-290 (371)
471 PRK03767 NAD(P)H:quinone oxido 22.9 1.5E+02 0.0032 26.0 4.6 36 5-40 2-39 (200)
472 PRK06847 hypothetical protein; 22.8 97 0.0021 30.1 3.8 35 1-40 1-35 (375)
473 PRK10637 cysG siroheme synthas 22.7 8E+02 0.017 24.8 16.2 151 276-451 7-167 (457)
474 COG0569 TrkA K+ transport syst 22.7 1E+02 0.0023 27.6 3.7 33 5-42 1-33 (225)
475 cd02034 CooC The accessory pro 22.7 1.9E+02 0.0041 22.8 4.8 37 6-42 1-37 (116)
476 COG4635 HemG Flavodoxin [Energ 22.6 1.5E+02 0.0033 24.9 4.1 37 5-41 1-38 (175)
477 PRK13982 bifunctional SbtC-lik 22.6 90 0.0019 31.6 3.5 44 5-49 71-114 (475)
478 TIGR03453 partition_RepA plasm 22.5 1.4E+02 0.003 29.5 4.7 40 3-42 102-143 (387)
479 PF06564 YhjQ: YhjQ protein; 22.5 1.4E+02 0.0029 27.3 4.3 31 11-41 9-39 (243)
480 PRK06965 acetolactate synthase 22.4 2.2E+02 0.0047 29.9 6.5 27 362-388 85-117 (587)
481 PRK13196 pyrrolidone-carboxyla 22.4 2.4E+02 0.0052 25.1 5.8 26 5-30 2-29 (211)
482 PRK06395 phosphoribosylamine-- 22.3 3.9E+02 0.0084 26.8 8.0 31 5-40 3-33 (435)
483 PF02056 Glyco_hydro_4: Family 22.3 3E+02 0.0066 23.8 6.2 125 17-150 40-173 (183)
484 PRK06756 flavodoxin; Provision 22.2 1.5E+02 0.0033 24.3 4.4 36 5-40 2-38 (148)
485 COG2230 Cfa Cyclopropane fatty 22.2 11 0.00024 35.0 -2.7 39 368-406 80-121 (283)
486 PF06506 PrpR_N: Propionate ca 22.1 1.1E+02 0.0023 26.2 3.5 122 16-149 17-155 (176)
487 cd03371 TPP_PpyrDC Thiamine py 22.1 4.5E+02 0.0098 22.7 7.5 52 365-431 100-151 (188)
488 cd01121 Sms Sms (bacterial rad 22.1 2.4E+02 0.0052 27.7 6.2 38 7-44 85-122 (372)
489 TIGR01282 nifD nitrogenase mol 22.0 59 0.0013 33.0 2.1 34 107-143 395-428 (466)
490 PRK04020 rps2P 30S ribosomal p 21.9 1.3E+02 0.0027 26.6 3.9 33 116-148 114-148 (204)
491 PRK06457 pyruvate dehydrogenas 21.9 1.7E+02 0.0038 30.3 5.6 27 362-388 65-97 (549)
492 cd01968 Nitrogenase_NifE_I Nit 21.9 1.1E+02 0.0024 30.4 4.0 34 107-143 347-380 (410)
493 PRK08558 adenine phosphoribosy 21.7 1.7E+02 0.0037 26.6 4.8 38 106-143 101-140 (238)
494 TIGR02931 anfK_nitrog Fe-only 21.7 1.4E+02 0.0031 30.2 4.8 34 107-143 377-412 (461)
495 PLN02496 probable phosphopanto 21.6 1.1E+02 0.0023 27.2 3.4 44 4-49 19-62 (209)
496 PF03358 FMN_red: NADPH-depend 21.6 1.5E+02 0.0032 24.4 4.2 36 5-40 1-39 (152)
497 PRK08978 acetolactate synthase 21.5 1.8E+02 0.0039 30.2 5.7 26 363-388 65-96 (548)
498 cd01973 Nitrogenase_VFe_beta_l 21.5 1.4E+02 0.0031 30.1 4.7 34 107-143 370-405 (454)
499 PLN03064 alpha,alpha-trehalose 21.4 7.3E+02 0.016 27.8 10.2 102 349-466 446-559 (934)
500 TIGR01501 MthylAspMutase methy 21.3 1.4E+02 0.0029 24.4 3.7 39 5-43 2-40 (134)
No 1
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=2.3e-69 Score=531.03 Aligned_cols=460 Identities=41% Similarity=0.750 Sum_probs=353.9
Q ss_pred CCCccEEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCcccCCCeEEEEecCCccccccccCCCC
Q 036520 1 MARKLHVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPKNIQRLPKPAPESEVAALINFVEFPLPASAALDDKLLLP 80 (473)
Q Consensus 1 m~~~~~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~l~ 80 (473)
|+.+.||+++|++++||++||++||+.|+.+|+.|||++++.+...+..... ....+|+++.+|+|.. ++++
T Consensus 3 ~~~~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~--~~~~~i~~~~lp~p~~------dglp 74 (472)
T PLN02670 3 REEVLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPS--QLSSSITLVSFPLPSV------PGLP 74 (472)
T ss_pred CCCCcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhccc--cCCCCeeEEECCCCcc------CCCC
Confidence 4667899999999999999999999999999999999999987655543211 1123699999998877 7888
Q ss_pred CCCccCCCCChhhHHHHHHHHhhhhhHHHHHHHhCCCcEEEEcCCcchHHHHHHHcCCCeEEEecchhHHHHHHhchhhh
Q 036520 81 EGAEATVDIPSENIQYLKIAYDLLQHPFKQFVAQQSVDWIIVDVMSHWAGKIAQEYHVPLLLFSAFSAAAFQFIANPECL 160 (473)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~ 160 (473)
.+.+...+.......++....+.+.+.+.+++++.+++|||+|.+..|+..+|+++|||++.|+++++..+..+.++..+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~ 154 (472)
T PLN02670 75 SSAESSTDVPYTKQQLLKKAFDLLEPPLTTFLETSKPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSL 154 (472)
T ss_pred CCcccccccchhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhh
Confidence 76554333322223455566667888899999888899999999999999999999999999999999888776544322
Q ss_pred hcCCCCCCCCCCccccCCCccccCCCccccccccccccccccccCCCCchhhHHHHHHhhccccEEEEcCCchhhhHHHH
Q 036520 161 VGDGQKRVRPSAESLTSVPEWVDFPSSVALRTFDAIGMHHGFYGMNASGITDAHRTAEILHSCQAMAIRSCPEFEGEYLN 240 (473)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~ 240 (473)
...+.. +...+.....+.++|.+..+.++..+++.+... .......+....+......+.+++++|||.+||+.+++
T Consensus 155 ~~~~~~--~~~~~~~~~~p~~~P~~~~~~~~~~dlp~~~~~-~~~~~~~~~~~~~~~~~~~~~~gvlvNTf~eLE~~~l~ 231 (472)
T PLN02670 155 MEGGDL--RSTAEDFTVVPPWVPFESNIVFRYHEVTKYVEK-TEEDETGPSDSVRFGFAIGGSDVVIIRSSPEFEPEWFD 231 (472)
T ss_pred hhcccC--CCccccccCCCCcCCCCccccccHHHhhHHHhc-cCccchHHHHHHHHHhhcccCCEEEEeCHHHHhHHHHH
Confidence 222221 111111111222334333333455565554321 11111122222333344567889999999999999999
Q ss_pred HHHhhcCCCeEEeeccCCCC--CCCCC-C-CCchhhhhccccCCCCCcEEEEeecCcccCCHHHHHHHHHHHhcCCCCEE
Q 036520 241 LLEKLTGKPVIPVGLLTPEP--NSAKG-R-DHQISKIFQWLDEQKPRSVVFVGFGSECKLSKDQVYEIAYGLELSGLPFL 316 (473)
Q Consensus 241 ~~~~~~~~~~~~vGp~~~~~--~~~~~-~-~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i 316 (473)
.+++.++++++.|||+.... ..... . ...++++.+||+++++++||||||||+..++.+++.+++.+|+.++++||
T Consensus 232 ~l~~~~~~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~~Fl 311 (472)
T PLN02670 232 LLSDLYRKPIIPIGFLPPVIEDDEEDDTIDVKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEKSETPFF 311 (472)
T ss_pred HHHHhhCCCeEEEecCCccccccccccccccchhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEE
Confidence 99876656799999997531 11100 0 01246799999999888999999999999999999999999999999999
Q ss_pred EEEcCCCCCC-CccccCchhhhhhcCCCceEEecccchHHHhhCCCcceeeeccCchhHHHHHhhCCceecccccccccc
Q 036520 317 WALRKPEWAT-DDVDALPLGFADTIRGKGIVSIGWAPQLEILAHPSIGTSLFHAGWGSVIETLQFGHSLVVLPLIIDQPL 395 (473)
Q Consensus 317 ~~~~~~~~~~-~~~~~~p~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P~~~DQ~~ 395 (473)
|+++.....+ +....+|++|.++.+.+++++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.
T Consensus 312 Wv~r~~~~~~~~~~~~lp~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~ 391 (472)
T PLN02670 312 WVLRNEPGTTQNALEMLPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFPVLNEQGL 391 (472)
T ss_pred EEEcCCcccccchhhcCChHHHHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEEeCcchhccHH
Confidence 9998642211 112368999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeeecceEEEEecCC-CCCcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHhcc
Q 036520 396 NARLLVDKDLAVQVERKD-DGSFTRDGIAKALRLATVSEEGEKLRVRAREAANTFNDKKLHDDYSVRFVEYLKINVA 471 (473)
Q Consensus 396 na~~v~~~G~G~~l~~~~-~~~~t~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (473)
||+++++.|+|+.+...+ ++.+++++|+++|+++|.+++..+||+||+++++.+++.++..++++.+++++..+..
T Consensus 392 Na~~v~~~g~Gv~l~~~~~~~~~~~e~i~~av~~vm~~~~g~~~r~~a~~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 468 (472)
T PLN02670 392 NTRLLHGKKLGLEVPRDERDGSFTSDSVAESVRLAMVDDAGEEIRDKAKEMRNLFGDMDRNNRYVDELVHYLRENRS 468 (472)
T ss_pred HHHHHHHcCeeEEeeccccCCcCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHhcc
Confidence 999999999999997642 2468999999999999985445689999999999999999999999999999987653
No 2
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=7.1e-67 Score=512.43 Aligned_cols=436 Identities=31% Similarity=0.511 Sum_probs=339.2
Q ss_pred CCCccEEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCcccCCCeEEEEecCCccccccccCCCC
Q 036520 1 MARKLHVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPKNIQRLPKPAPESEVAALINFVEFPLPASAALDDKLLLP 80 (473)
Q Consensus 1 m~~~~~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~l~ 80 (473)
|+.++||+++|++++||++|+++||+.|+.+||+|||++++.+...+...+ ....++++..+++|.. ++++
T Consensus 1 ~~~~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~---a~~~~i~~~~l~~p~~------dgLp 71 (442)
T PLN02208 1 MEPKFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHN---LFPDSIVFHPLTIPPV------NGLP 71 (442)
T ss_pred CCCCCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhccc---CCCCceEEEEeCCCCc------cCCC
Confidence 889999999999999999999999999999999999999888776655432 1123578888877644 6777
Q ss_pred CCCccCCCCChhhHHHHHHHHhhhhhHHHHHHHhCCCcEEEEcCCcchHHHHHHHcCCCeEEEecchhHHHHHHhchhhh
Q 036520 81 EGAEATVDIPSENIQYLKIAYDLLQHPFKQFVAQQSVDWIIVDVMSHWAGKIAQEYHVPLLLFSAFSAAAFQFIANPECL 160 (473)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~ 160 (473)
.+.+...+........+....+.+.+.+.+++++.++||||+| +..|+..+|+++|||++.|+++++.... +.+..
T Consensus 72 ~g~~~~~~l~~~l~~~~~~~~~~~~~~l~~~L~~~~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~-- 147 (442)
T PLN02208 72 AGAETTSDIPISMDNLLSEALDLTRDQVEAAVRALRPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVP-- 147 (442)
T ss_pred CCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccC--
Confidence 6654322233333445556667788889999998899999999 5789999999999999999999998654 32221
Q ss_pred hcCCCCCCCCCCccccCCCccccCCCccccccccccccccccccCCCCchh-hHHHHHHhhccccEEEEcCCchhhhHHH
Q 036520 161 VGDGQKRVRPSAESLTSVPEWVDFPSSVALRTFDAIGMHHGFYGMNASGIT-DAHRTAEILHSCQAMAIRSCPEFEGEYL 239 (473)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~le~~~~ 239 (473)
.+. ...+.+.+|.. .+.++..+++.+ ......+. +..++.....+++++++|||.+||++++
T Consensus 148 --~~~---------~~~~~pglp~~-~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~ 210 (442)
T PLN02208 148 --GGK---------LGVPPPGYPSS-KVLFRENDAHAL-----ATLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFC 210 (442)
T ss_pred --ccc---------cCCCCCCCCCc-ccccCHHHcCcc-----cccchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHH
Confidence 000 00111222211 112344444432 11111121 2223334456789999999999999999
Q ss_pred HHHHhhcCCCeEEeeccCCCCCCCCCCCCchhhhhccccCCCCCcEEEEeecCcccCCHHHHHHHHHHHhcCCCCEEEEE
Q 036520 240 NLLEKLTGKPVIPVGLLTPEPNSAKGRDHQISKIFQWLDEQKPRSVVFVGFGSECKLSKDQVYEIAYGLELSGLPFLWAL 319 (473)
Q Consensus 240 ~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~ 319 (473)
+++++.+.++++.|||++...... ...++++.+||++++++++|||||||...++.+++.+++.+++.++.+|+|++
T Consensus 211 ~~~~~~~~~~v~~vGpl~~~~~~~---~~~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf~wv~ 287 (442)
T PLN02208 211 DYISRQYHKKVLLTGPMFPEPDTS---KPLEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPFLIAV 287 (442)
T ss_pred HHHHhhcCCCEEEEeecccCcCCC---CCCHHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEE
Confidence 999887778899999998654311 22457899999999888999999999999899999999999999999999999
Q ss_pred cCCCCCCCccccCchhhhhhcCCCceEEecccchHHHhhCCCcceeeeccCchhHHHHHhhCCceeccccccccccceee
Q 036520 320 RKPEWATDDVDALPLGFADTIRGKGIVSIGWAPQLEILAHPSIGTSLFHAGWGSVIETLQFGHSLVVLPLIIDQPLNARL 399 (473)
Q Consensus 320 ~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P~~~DQ~~na~~ 399 (473)
+.+....+....+|++|+++.+.+|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||++
T Consensus 288 r~~~~~~~~~~~lp~~f~~r~~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~ 367 (442)
T PLN02208 288 KPPRGSSTVQEGLPEGFEERVKGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQVLFTRL 367 (442)
T ss_pred eCCCcccchhhhCCHHHHHHHhcCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcchhhHHHHHH
Confidence 85421101234689999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred eee-cceEEEEecCCCCCcCHHHHHHHHHHHhcC--cchHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHh
Q 036520 400 LVD-KDLAVQVERKDDGSFTRDGIAKALRLATVS--EEGEKLRVRAREAANTFNDKKLHDDYSVRFVEYLKIN 469 (473)
Q Consensus 400 v~~-~G~G~~l~~~~~~~~t~~~l~~~i~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (473)
+++ .|+|+.++..+++.+++++|+++|+++|++ ++..++|++|+++++.+.+.|++..+++.+++.++..
T Consensus 368 ~~~~~g~gv~~~~~~~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~~~gsS~~~l~~~v~~l~~~ 440 (442)
T PLN02208 368 MTEEFEVSVEVSREKTGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILVSPGLLTGYVDKFVEELQEY 440 (442)
T ss_pred HHHHhceeEEeccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHh
Confidence 776 799999986533359999999999999974 2356799999999999988888899999999988653
No 3
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=4.1e-66 Score=507.64 Aligned_cols=441 Identities=32% Similarity=0.542 Sum_probs=339.8
Q ss_pred CCCccEEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCcccCCCeEEEEecCCccccccccCCCC
Q 036520 1 MARKLHVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPKNIQRLPKPAPESEVAALINFVEFPLPASAALDDKLLLP 80 (473)
Q Consensus 1 m~~~~~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~l~ 80 (473)
|+.+.||+++|++++||++|+++||+.|+.+|++|||++++.+...+.... ...+++++..+++|.. ++++
T Consensus 1 ~~~~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~---~~~~~i~~~~i~lP~~------dGLP 71 (446)
T PLN00414 1 MGSKFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLN---LFPDSIVFEPLTLPPV------DGLP 71 (446)
T ss_pred CCCCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhcccc---cCCCceEEEEecCCCc------CCCC
Confidence 788999999999999999999999999999999999999988766554432 1223588888887766 7888
Q ss_pred CCCccCCCCChhhHHHHHHHHhhhhhHHHHHHHhCCCcEEEEcCCcchHHHHHHHcCCCeEEEecchhHHHHHHhchhhh
Q 036520 81 EGAEATVDIPSENIQYLKIAYDLLQHPFKQFVAQQSVDWIIVDVMSHWAGKIAQEYHVPLLLFSAFSAAAFQFIANPECL 160 (473)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~ 160 (473)
.+.+...+........+......+.+.+.+++++.+|||||+|. ..|+..+|+++|||++.|+++++.....+.++..
T Consensus 72 ~g~e~~~~l~~~~~~~~~~a~~~l~~~l~~~L~~~~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~~~~- 149 (446)
T PLN00414 72 FGAETASDLPNSTKKPIFDAMDLLRDQIEAKVRALKPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLAPRA- 149 (446)
T ss_pred CcccccccchhhHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhCcHh-
Confidence 77544333333333445566667788888888888899999995 7899999999999999999999988887665320
Q ss_pred hcCCCCCCCCCCccccCCCccccCCCccccccccccccccccccCCCCchhhHHHHHHhhccccEEEEcCCchhhhHHHH
Q 036520 161 VGDGQKRVRPSAESLTSVPEWVDFPSSVALRTFDAIGMHHGFYGMNASGITDAHRTAEILHSCQAMAIRSCPEFEGEYLN 240 (473)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~ 240 (473)
....+++.+|.. .+.++..+.. +... .. .......+......+++++++|||.+||+.+++
T Consensus 150 -------------~~~~~~pg~p~~-~~~~~~~~~~-~~~~-~~---~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~ 210 (446)
T PLN00414 150 -------------ELGFPPPDYPLS-KVALRGHDAN-VCSL-FA---NSHELFGLITKGLKNCDVVSIRTCVELEGNLCD 210 (446)
T ss_pred -------------hcCCCCCCCCCC-cCcCchhhcc-cchh-hc---ccHHHHHHHHHhhccCCEEEEechHHHHHHHHH
Confidence 000112222211 0011111111 0000 00 011223333445667899999999999999999
Q ss_pred HHHhhcCCCeEEeeccCCCCCCCCCCCCchhhhhccccCCCCCcEEEEeecCcccCCHHHHHHHHHHHhcCCCCEEEEEc
Q 036520 241 LLEKLTGKPVIPVGLLTPEPNSAKGRDHQISKIFQWLDEQKPRSVVFVGFGSECKLSKDQVYEIAYGLELSGLPFLWALR 320 (473)
Q Consensus 241 ~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~ 320 (473)
++++.++++++.|||+......... ....+++.+|||++++++||||||||....+.+++.+++.+|+.+|.+|+|+++
T Consensus 211 ~~~~~~~~~v~~VGPl~~~~~~~~~-~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~Flwvvr 289 (446)
T PLN00414 211 FIERQCQRKVLLTGPMLPEPQNKSG-KPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPFLIAVM 289 (446)
T ss_pred HHHHhcCCCeEEEcccCCCcccccC-cccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCeEEEEe
Confidence 9987666679999999753321100 112356999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCccccCchhhhhhcCCCceEEecccchHHHhhCCCcceeeeccCchhHHHHHhhCCceeccccccccccceeee
Q 036520 321 KPEWATDDVDALPLGFADTIRGKGIVSIGWAPQLEILAHPSIGTSLFHAGWGSVIETLQFGHSLVVLPLIIDQPLNARLL 400 (473)
Q Consensus 321 ~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v 400 (473)
......+....+|++|+++.+++++++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+++
T Consensus 290 ~~~~~~~~~~~lp~~f~~r~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~ 369 (446)
T PLN00414 290 PPKGSSTVQEALPEGFEERVKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQVLITRLL 369 (446)
T ss_pred cCCCcccchhhCChhHHHHhcCCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcccchHHHHHHH
Confidence 64221011346899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred e-ecceEEEEecCCCCCcCHHHHHHHHHHHhcC--cchHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHhccC
Q 036520 401 V-DKDLAVQVERKDDGSFTRDGIAKALRLATVS--EEGEKLRVRAREAANTFNDKKLHDDYSVRFVEYLKINVAT 472 (473)
Q Consensus 401 ~-~~G~G~~l~~~~~~~~t~~~l~~~i~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (473)
+ +.|+|+.+...+++.+++++|+++|+++|.+ ++..++|++|+++++.+.+.+|+...++.+++.++..+++
T Consensus 370 ~~~~g~g~~~~~~~~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~~~~gg~ss~l~~~v~~~~~~~~~ 444 (446)
T PLN00414 370 TEELEVSVKVQREDSGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETLVSPGLLSGYADKFVEALENEVNN 444 (446)
T ss_pred HHHhCeEEEeccccCCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccc
Confidence 6 5799999975322358999999999999973 2345699999999999988888556689999999877664
No 4
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=1.5e-65 Score=499.97 Aligned_cols=441 Identities=32% Similarity=0.502 Sum_probs=338.0
Q ss_pred CccEEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCcccCCCeEEEEecCCccccccccCCCCCC
Q 036520 3 RKLHVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPKNIQRLPKPAPESEVAALINFVEFPLPASAALDDKLLLPEG 82 (473)
Q Consensus 3 ~~~~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~l~~~ 82 (473)
.++||+++|++++||++|+++||+.|+.+|+.|||++++.+...+... . ....++.++.+++|.. ++++.+
T Consensus 4 ~~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~-~--~~~~~~~v~~~~~p~~------~glp~g 74 (453)
T PLN02764 4 LKFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHL-N--LFPHNIVFRSVTVPHV------DGLPVG 74 (453)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhccc-c--cCCCCceEEEEECCCc------CCCCCc
Confidence 468999999999999999999999999999999999998876554431 0 1112445556565554 677776
Q ss_pred CccCCCCChhhHHHHHHHHhhhhhHHHHHHHhCCCcEEEEcCCcchHHHHHHHcCCCeEEEecchhHHHHHHhchhhhhc
Q 036520 83 AEATVDIPSENIQYLKIAYDLLQHPFKQFVAQQSVDWIIVDVMSHWAGKIAQEYHVPLLLFSAFSAAAFQFIANPECLVG 162 (473)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~ 162 (473)
.+...+.+......+....+.+.+.+.+++++.+|||||+|. ..|+..+|+++|||++.|+++++..+..+..+.
T Consensus 75 ~e~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~~~---- 149 (453)
T PLN02764 75 TETVSEIPVTSADLLMSAMDLTRDQVEVVVRAVEPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLVPG---- 149 (453)
T ss_pred ccccccCChhHHHHHHHHHHHhHHHHHHHHHhCCCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhccc----
Confidence 554444443333445556666788899999888899999994 889999999999999999999998877764311
Q ss_pred CCCCCCCCCCccccCCCccccCCCccccccccccccccccc-cCCCCchhhHHHHHHhhccccEEEEcCCchhhhHHHHH
Q 036520 163 DGQKRVRPSAESLTSVPEWVDFPSSVALRTFDAIGMHHGFY-GMNASGITDAHRTAEILHSCQAMAIRSCPEFEGEYLNL 241 (473)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~ 241 (473)
+. .+.+.+.+|.. ...++..+++.+..... ........+..++.......+++++|||.+||++++++
T Consensus 150 -~~---------~~~~~pglp~~-~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~~~ 218 (453)
T PLN02764 150 -GE---------LGVPPPGYPSS-KVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFCDY 218 (453)
T ss_pred -cc---------CCCCCCCCCCC-cccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHHHH
Confidence 00 00111222210 11234444443211000 00011123444443456678899999999999999999
Q ss_pred HHhhcCCCeEEeeccCCCCCCCCCCCCchhhhhccccCCCCCcEEEEeecCcccCCHHHHHHHHHHHhcCCCCEEEEEcC
Q 036520 242 LEKLTGKPVIPVGLLTPEPNSAKGRDHQISKIFQWLDEQKPRSVVFVGFGSECKLSKDQVYEIAYGLELSGLPFLWALRK 321 (473)
Q Consensus 242 ~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~ 321 (473)
+++..+++++.|||+....... ...++++.+|||++++++||||||||....+.+++.+++.+|+.++.+|+|+++.
T Consensus 219 ~~~~~~~~v~~VGPL~~~~~~~---~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~r~ 295 (453)
T PLN02764 219 IEKHCRKKVLLTGPVFPEPDKT---RELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAVKP 295 (453)
T ss_pred HHhhcCCcEEEeccCccCcccc---ccchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 9875556799999997543111 1124679999999999999999999999999999999999999999999999985
Q ss_pred CCCCCCccccCchhhhhhcCCCceEEecccchHHHhhCCCcceeeeccCchhHHHHHhhCCceeccccccccccceeeee
Q 036520 322 PEWATDDVDALPLGFADTIRGKGIVSIGWAPQLEILAHPSIGTSLFHAGWGSVIETLQFGHSLVVLPLIIDQPLNARLLV 401 (473)
Q Consensus 322 ~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~ 401 (473)
.....+..+.+|++|+++.+.+++++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||++++
T Consensus 296 ~~~~~~~~~~lp~~f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~l~ 375 (453)
T PLN02764 296 PRGSSTIQEALPEGFEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQVLNTRLLS 375 (453)
T ss_pred CCCCcchhhhCCcchHhhhccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcccchHHHHHHHH
Confidence 32211123469999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred e-cceEEEEecCCCCCcCHHHHHHHHHHHhcC--cchHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHhcc
Q 036520 402 D-KDLAVQVERKDDGSFTRDGIAKALRLATVS--EEGEKLRVRAREAANTFNDKKLHDDYSVRFVEYLKINVA 471 (473)
Q Consensus 402 ~-~G~G~~l~~~~~~~~t~~~l~~~i~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (473)
+ .|+|+.+...+.+.+++++|+++|+++|.+ ++..++|++++++++.+++.|++..+++.++++++....
T Consensus 376 ~~~g~gv~~~~~~~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~~~~GSS~~~l~~lv~~~~~~~~ 448 (453)
T PLN02764 376 DELKVSVEVAREETGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETLASPGLLTGYVDNFIESLQDLVS 448 (453)
T ss_pred HHhceEEEeccccCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcc
Confidence 4 699998864312368999999999999974 345679999999999999999999999999999987654
No 5
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.2e-64 Score=501.40 Aligned_cols=452 Identities=26% Similarity=0.413 Sum_probs=339.9
Q ss_pred CCccEEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCcccCCCeEEEEecCCccccccccCCCCC
Q 036520 2 ARKLHVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPKNIQRLPKPAPESEVAALINFVEFPLPASAALDDKLLLPE 81 (473)
Q Consensus 2 ~~~~~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~l~~ 81 (473)
..++||+++|++++||++||++||+.|+.+|+.|||++++.+...+..... ..++++++.+++|.. ++++.
T Consensus 7 ~~~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~---~~~~i~~~~lp~P~~------~~lPd 77 (477)
T PLN02863 7 PAGTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLS---KHPSIETLVLPFPSH------PSIPS 77 (477)
T ss_pred CCCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhcc---cCCCeeEEeCCCCCc------CCCCC
Confidence 356899999999999999999999999999999999999988765543211 124688989988766 77887
Q ss_pred CCccCCCCChhhHHHHHHHHhhhhhHHHHHHHh--CCCcEEEEcCCcchHHHHHHHcCCCeEEEecchhHHHHHHhchhh
Q 036520 82 GAEATVDIPSENIQYLKIAYDLLQHPFKQFVAQ--QSVDWIIVDVMSHWAGKIAQEYHVPLLLFSAFSAAAFQFIANPEC 159 (473)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~--~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~ 159 (473)
+.+...+.+.+....+......+.+.+.+++++ .+|+|||+|.+..|+..+|+++|||++.|++++++.+..+.++..
T Consensus 78 G~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~ 157 (477)
T PLN02863 78 GVENVKDLPPSGFPLMIHALGELYAPLLSWFRSHPSPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWR 157 (477)
T ss_pred CCcChhhcchhhHHHHHHHHHHhHHHHHHHHHhCCCCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhh
Confidence 766554444444455666666777778888876 367999999999999999999999999999999999888765531
Q ss_pred hhcCCCCCCCCCCccccCCCccccCCCccccccccccccccccccCCCCchhhHHHHHHhhccccEEEEcCCchhhhHHH
Q 036520 160 LVGDGQKRVRPSAESLTSVPEWVDFPSSVALRTFDAIGMHHGFYGMNASGITDAHRTAEILHSCQAMAIRSCPEFEGEYL 239 (473)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~ 239 (473)
...... .......+....++|+ ...++..+++.++.... ..........+........+++++|||++||++++
T Consensus 158 ~~~~~~---~~~~~~~~~~~~~iPg--~~~~~~~dlp~~~~~~~-~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~ 231 (477)
T PLN02863 158 EMPTKI---NPDDQNEILSFSKIPN--CPKYPWWQISSLYRSYV-EGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYL 231 (477)
T ss_pred cccccc---cccccccccccCCCCC--CCCcChHhCchhhhccC-ccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHH
Confidence 110000 0000000111112332 22345555554332110 11111122222222345678899999999999999
Q ss_pred HHHHhhcC-CCeEEeeccCCCCCCC-------CCCCCchhhhhccccCCCCCcEEEEeecCcccCCHHHHHHHHHHHhcC
Q 036520 240 NLLEKLTG-KPVIPVGLLTPEPNSA-------KGRDHQISKIFQWLDEQKPRSVVFVGFGSECKLSKDQVYEIAYGLELS 311 (473)
Q Consensus 240 ~~~~~~~~-~~~~~vGp~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~ 311 (473)
+.+++.++ ++++.|||+.+..... ......++++.+||+.++++++|||||||+...+.+++.+++.+|+.+
T Consensus 232 ~~~~~~~~~~~v~~IGPL~~~~~~~~~~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~~ 311 (477)
T PLN02863 232 EHLKKELGHDRVWAVGPILPLSGEKSGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEKS 311 (477)
T ss_pred HHHHhhcCCCCeEEeCCCcccccccccccccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHhC
Confidence 99988765 5799999997532100 000113467999999998889999999999999999999999999999
Q ss_pred CCCEEEEEcCCCCCCCccccCchhhhhhcCCCceEEecccchHHHhhCCCcceeeeccCchhHHHHHhhCCceecccccc
Q 036520 312 GLPFLWALRKPEWATDDVDALPLGFADTIRGKGIVSIGWAPQLEILAHPSIGTSLFHAGWGSVIETLQFGHSLVVLPLII 391 (473)
Q Consensus 312 ~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P~~~ 391 (473)
+++|||+++...........+|+++.++.+.+|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++
T Consensus 312 ~~~flw~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~ 391 (477)
T PLN02863 312 GVHFIWCVKEPVNEESDYSNIPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPMAA 391 (477)
T ss_pred CCcEEEEECCCcccccchhhCCHHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeCCccc
Confidence 99999999854321011245888999998899999999999999999999999999999999999999999999999999
Q ss_pred ccccceeeeee-cceEEEEecCCCCCcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHh----ccCCCcHHHHHHHHHHH
Q 036520 392 DQPLNARLLVD-KDLAVQVERKDDGSFTRDGIAKALRLATVSEEGEKLRVRAREAANTF----NDKKLHDDYSVRFVEYL 466 (473)
Q Consensus 392 DQ~~na~~v~~-~G~G~~l~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~~~~ 466 (473)
||+.||+++++ .|+|+.+.....+.++++++.++|+++|.. +++||+||+++++.+ .+.|++..+++.+++++
T Consensus 392 DQ~~na~~v~~~~gvG~~~~~~~~~~~~~~~v~~~v~~~m~~--~~~~r~~a~~l~e~a~~Av~~gGSS~~~l~~~v~~i 469 (477)
T PLN02863 392 DQFVNASLLVDELKVAVRVCEGADTVPDSDELARVFMESVSE--NQVERERAKELRRAALDAIKERGSSVKDLDGFVKHV 469 (477)
T ss_pred cchhhHHHHHHhhceeEEeccCCCCCcCHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 99999999764 699999954222357999999999999931 789999999999884 45688899999999998
Q ss_pred HHhc
Q 036520 467 KINV 470 (473)
Q Consensus 467 ~~~~ 470 (473)
+...
T Consensus 470 ~~~~ 473 (477)
T PLN02863 470 VELG 473 (477)
T ss_pred HHhc
Confidence 7653
No 6
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=8.1e-63 Score=484.96 Aligned_cols=431 Identities=27% Similarity=0.406 Sum_probs=316.7
Q ss_pred ccEEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCcccCCCeEEEEecCCccccccccCCCCCCC
Q 036520 4 KLHVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPKNIQRLPKPAPESEVAALINFVEFPLPASAALDDKLLLPEGA 83 (473)
Q Consensus 4 ~~~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~l~~~~ 83 (473)
+.||+++|++++||++||++||+.|+.+|+.|||++++.+... .. ....+|++..+| ++++.+.
T Consensus 7 ~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~--~~----~~~~~i~~~~ip----------~glp~~~ 70 (451)
T PLN02410 7 RRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFS--PS----DDFTDFQFVTIP----------ESLPESD 70 (451)
T ss_pred CCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCcccccc--cc----cCCCCeEEEeCC----------CCCCccc
Confidence 3699999999999999999999999999999999999876421 11 011368888887 6676532
Q ss_pred ccCCCCChhhHHHHHHHHhhhhhHHHHHHHh------CCCcEEEEcCCcchHHHHHHHcCCCeEEEecchhHHHHHHhch
Q 036520 84 EATVDIPSENIQYLKIAYDLLQHPFKQFVAQ------QSVDWIIVDVMSHWAGKIAQEYHVPLLLFSAFSAAAFQFIANP 157 (473)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~------~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~ 157 (473)
... . ....++....+.+.+.+.+++++ .+++|||+|.+..|+..+|+++|||++.|++++++.+..+.++
T Consensus 71 ~~~--~--~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~ 146 (451)
T PLN02410 71 FKN--L--GPIEFLHKLNKECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVF 146 (451)
T ss_pred ccc--c--CHHHHHHHHHHHhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHH
Confidence 111 1 12234443444455555555554 2469999999999999999999999999999999988766654
Q ss_pred hhhhcCCC-CCCCCCCccccCCCccccCCCccccccccccccccccccCCCCchhhHHHHHHhhccccEEEEcCCchhhh
Q 036520 158 ECLVGDGQ-KRVRPSAESLTSVPEWVDFPSSVALRTFDAIGMHHGFYGMNASGITDAHRTAEILHSCQAMAIRSCPEFEG 236 (473)
Q Consensus 158 ~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~ 236 (473)
..+...+. .+....... ....+|. ...++..+++... ............. .....+++++++|||++||+
T Consensus 147 ~~~~~~~~~~~~~~~~~~---~~~~iPg--~~~~~~~dlp~~~---~~~~~~~~~~~~~-~~~~~~~~~vlvNTf~eLE~ 217 (451)
T PLN02410 147 DKLYANNVLAPLKEPKGQ---QNELVPE--FHPLRCKDFPVSH---WASLESIMELYRN-TVDKRTASSVIINTASCLES 217 (451)
T ss_pred HHHHhccCCCCccccccC---ccccCCC--CCCCChHHCcchh---cCCcHHHHHHHHH-HhhcccCCEEEEeChHHhhH
Confidence 33332111 010000000 0112222 1223333333211 0111111111111 12345788999999999999
Q ss_pred HHHHHHHhhcCCCeEEeeccCCCCCCCCCCCCchhhhhccccCCCCCcEEEEeecCcccCCHHHHHHHHHHHhcCCCCEE
Q 036520 237 EYLNLLEKLTGKPVIPVGLLTPEPNSAKGRDHQISKIFQWLDEQKPRSVVFVGFGSECKLSKDQVYEIAYGLELSGLPFL 316 (473)
Q Consensus 237 ~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i 316 (473)
++++++++..++++++|||++.............+++.+||+++++++||||||||....+.+++.+++.+|+.++.+|+
T Consensus 218 ~~~~~l~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~Fl 297 (451)
T PLN02410 218 SSLSRLQQQLQIPVYPIGPLHLVASAPTSLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLDSSNQQFL 297 (451)
T ss_pred HHHHHHHhccCCCEEEecccccccCCCccccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeE
Confidence 99999988776789999999754321110022335689999999888999999999999999999999999999999999
Q ss_pred EEEcCCCCCC-CccccCchhhhhhcCCCceEEecccchHHHhhCCCcceeeeccCchhHHHHHhhCCceecccccccccc
Q 036520 317 WALRKPEWAT-DDVDALPLGFADTIRGKGIVSIGWAPQLEILAHPSIGTSLFHAGWGSVIETLQFGHSLVVLPLIIDQPL 395 (473)
Q Consensus 317 ~~~~~~~~~~-~~~~~~p~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P~~~DQ~~ 395 (473)
|+++.+.... +....+|++|+++.++. .++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.
T Consensus 298 Wv~r~~~~~~~~~~~~lp~~f~er~~~~-g~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~ 376 (451)
T PLN02410 298 WVIRPGSVRGSEWIESLPKEFSKIISGR-GYIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFSSDQKV 376 (451)
T ss_pred EEEccCcccccchhhcCChhHHHhccCC-eEEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEeccccccCHH
Confidence 9998532110 01124899999988654 466699999999999999999999999999999999999999999999999
Q ss_pred ceeeeeec-ceEEEEecCCCCCcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHhc----cCCCcHHHHHHHHHHHHH
Q 036520 396 NARLLVDK-DLAVQVERKDDGSFTRDGIAKALRLATVSEEGEKLRVRAREAANTFN----DKKLHDDYSVRFVEYLKI 468 (473)
Q Consensus 396 na~~v~~~-G~G~~l~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~~~~~ 468 (473)
||+++++. |+|+.+. . .+++++|+++|+++|.++++++||++|+++++.++ +.|++..+++.++++++.
T Consensus 377 na~~~~~~~~~G~~~~-~---~~~~~~v~~av~~lm~~~~~~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~fv~~~~~ 450 (451)
T PLN02410 377 NARYLECVWKIGIQVE-G---DLDRGAVERAVKRLMVEEEGEEMRKRAISLKEQLRASVISGGSSHNSLEEFVHFMRT 450 (451)
T ss_pred HHHHHHHHhCeeEEeC-C---cccHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Confidence 99999887 9999997 3 78999999999999985556789999999999877 567788999999998764
No 7
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=4.7e-63 Score=484.24 Aligned_cols=422 Identities=23% Similarity=0.350 Sum_probs=320.5
Q ss_pred CCCc-cEEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCcccCCCeEEEEecCCccccccccCCC
Q 036520 1 MARK-LHVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPKNIQRLPKPAPESEVAALINFVEFPLPASAALDDKLLL 79 (473)
Q Consensus 1 m~~~-~~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~l 79 (473)
|.|+ .||+++|++++||++||++||+.|+.+|+.|||++++.+...+... ..++|+++.+| +++
T Consensus 1 ~~~~~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~-----~~~~i~~~~ip----------dgl 65 (449)
T PLN02173 1 MEKMRGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLD-----PSSPISIATIS----------DGY 65 (449)
T ss_pred CCCCCcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccC-----CCCCEEEEEcC----------CCC
Confidence 5555 5999999999999999999999999999999999998766544321 12369999987 777
Q ss_pred CCCC-ccCCCCChhhHHHHHHHHhhhhhHHHHHHHhC----CC-cEEEEcCCcchHHHHHHHcCCCeEEEecchhHHHHH
Q 036520 80 PEGA-EATVDIPSENIQYLKIAYDLLQHPFKQFVAQQ----SV-DWIIVDVMSHWAGKIAQEYHVPLLLFSAFSAAAFQF 153 (473)
Q Consensus 80 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~----~p-D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~ 153 (473)
+.+. +.. + +...++....+.+.+.+.++|++. +| +|||+|.+..|+..+|+++|||++.|++++++....
T Consensus 66 p~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~ 141 (449)
T PLN02173 66 DQGGFSSA-G---SVPEYLQNFKTFGSKTVADIIRKHQSTDNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYI 141 (449)
T ss_pred CCcccccc-c---CHHHHHHHHHHhhhHHHHHHHHHhhccCCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHH
Confidence 7632 221 1 222445545556677777777752 55 999999999999999999999999999998887765
Q ss_pred HhchhhhhcCCCCCCCCCCccccCCCccccCCCccccccccccccccccccCCCCchhhHHHHHHhhccccEEEEcCCch
Q 036520 154 IANPECLVGDGQKRVRPSAESLTSVPEWVDFPSSVALRTFDAIGMHHGFYGMNASGITDAHRTAEILHSCQAMAIRSCPE 233 (473)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 233 (473)
+.+.. +. .+....+ .++...++..+++.++... ......+....+......+.+++++|||++
T Consensus 142 ~~~~~-~~----------~~~~~~~-----~pg~p~l~~~dlp~~~~~~-~~~~~~~~~~~~~~~~~~~~~~vlvNTf~e 204 (449)
T PLN02173 142 NYLSY-IN----------NGSLTLP-----IKDLPLLELQDLPTFVTPT-GSHLAYFEMVLQQFTNFDKADFVLVNSFHD 204 (449)
T ss_pred HHhHH-hc----------cCCccCC-----CCCCCCCChhhCChhhcCC-CCchHHHHHHHHHHhhhccCCEEEEeCHHH
Confidence 54321 10 0001111 1121224445555433110 011111222223334566788999999999
Q ss_pred hhhHHHHHHHhhcCCCeEEeeccCCCCC------CCCCC----C--CchhhhhccccCCCCCcEEEEeecCcccCCHHHH
Q 036520 234 FEGEYLNLLEKLTGKPVIPVGLLTPEPN------SAKGR----D--HQISKIFQWLDEQKPRSVVFVGFGSECKLSKDQV 301 (473)
Q Consensus 234 le~~~~~~~~~~~~~~~~~vGp~~~~~~------~~~~~----~--~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~ 301 (473)
||+++++.++.. ++++.|||+.+... ..... . ..++++.+||+.++++++|||||||+...+.+++
T Consensus 205 LE~~~~~~~~~~--~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~ 282 (449)
T PLN02173 205 LDLHENELLSKV--CPVLTIGPTVPSMYLDQQIKSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQM 282 (449)
T ss_pred hhHHHHHHHHhc--CCeeEEcccCchhhccccccccccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHH
Confidence 999999988653 36999999974210 00000 0 1234699999999989999999999999999999
Q ss_pred HHHHHHHhcCCCCEEEEEcCCCCCCCccccCchhhhhhcCCCceEEecccchHHHhhCCCcceeeeccCchhHHHHHhhC
Q 036520 302 YEIAYGLELSGLPFLWALRKPEWATDDVDALPLGFADTIRGKGIVSIGWAPQLEILAHPSIGTSLFHAGWGSVIETLQFG 381 (473)
Q Consensus 302 ~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~ItHGG~~s~~eal~~G 381 (473)
.+++.+| ++.+|+|+++.+. ...+|+++.++.+.+|+++.+|+||.+||+|+++++|||||||||++||+++|
T Consensus 283 ~ela~gL--s~~~flWvvr~~~-----~~~lp~~~~~~~~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~G 355 (449)
T PLN02173 283 EEIASAI--SNFSYLWVVRASE-----ESKLPPGFLETVDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLG 355 (449)
T ss_pred HHHHHHh--cCCCEEEEEeccc-----hhcccchHHHhhcCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcC
Confidence 9999999 7888999998531 23578888888877889999999999999999999999999999999999999
Q ss_pred Cceeccccccccccceeeeeec-ceEEEEecCC-CCCcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHhc----cCCCc
Q 036520 382 HSLVVLPLIIDQPLNARLLVDK-DLAVQVERKD-DGSFTRDGIAKALRLATVSEEGEKLRVRAREAANTFN----DKKLH 455 (473)
Q Consensus 382 vP~l~~P~~~DQ~~na~~v~~~-G~G~~l~~~~-~~~~t~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~ 455 (473)
||||++|+++||+.||+++++. |+|+.+...+ ++.+++++|+++|+++|.+++.+++|+||+++++.++ +.|++
T Consensus 356 VP~l~~P~~~DQ~~Na~~v~~~~g~Gv~v~~~~~~~~~~~e~v~~av~~vm~~~~~~~~r~~a~~~~~~a~~Av~~gGSS 435 (449)
T PLN02173 356 VPMVAMPQWTDQPMNAKYIQDVWKVGVRVKAEKESGIAKREEIEFSIKEVMEGEKSKEMKENAGKWRDLAVKSLSEGGST 435 (449)
T ss_pred CCEEecCchhcchHHHHHHHHHhCceEEEeecccCCcccHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence 9999999999999999999987 9998887542 2357999999999999986666889999999999887 67788
Q ss_pred HHHHHHHHHHHH
Q 036520 456 DDYSVRFVEYLK 467 (473)
Q Consensus 456 ~~~~~~~~~~~~ 467 (473)
..+++.+++++.
T Consensus 436 ~~~l~~~v~~~~ 447 (449)
T PLN02173 436 DININTFVSKIQ 447 (449)
T ss_pred HHHHHHHHHHhc
Confidence 899999998875
No 8
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=8e-63 Score=487.14 Aligned_cols=453 Identities=28% Similarity=0.461 Sum_probs=334.3
Q ss_pred CCCccEEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCc-ccCCCeEEEEecCCccccccccCCC
Q 036520 1 MARKLHVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPKNIQRLPKPAPES-EVAALINFVEFPLPASAALDDKLLL 79 (473)
Q Consensus 1 m~~~~~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~-~~~~~i~~~~i~~~~~~~~~~~~~l 79 (473)
|.++.||+++|++++||++|+++||+.|+.+|+.|||++++.+...+....... .....|+++.+|+|... +++
T Consensus 5 ~~~~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~-----dgl 79 (491)
T PLN02534 5 KAKQLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKE-----VGL 79 (491)
T ss_pred cCCCCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCcc-----CCC
Confidence 677789999999999999999999999999999999999988765443321100 00124999999988652 578
Q ss_pred CCCCccCCCCCh-hhHHHHHHHHhhhhhHHHHHHHh--CCCcEEEEcCCcchHHHHHHHcCCCeEEEecchhHHHHHHhc
Q 036520 80 PEGAEATVDIPS-ENIQYLKIAYDLLQHPFKQFVAQ--QSVDWIIVDVMSHWAGKIAQEYHVPLLLFSAFSAAAFQFIAN 156 (473)
Q Consensus 80 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~ll~~--~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~ 156 (473)
+.+.+...+.+. .....+......+.+.+.++|++ .+|+|||+|.+..|+..+|+++|||++.|++++++....+..
T Consensus 80 p~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lL~~~~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~ 159 (491)
T PLN02534 80 PIGCENLDTLPSRDLLRKFYDAVDKLQQPLERFLEQAKPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHN 159 (491)
T ss_pred CCCccccccCCcHHHHHHHHHHHHHhHHHHHHHHHhcCCCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHH
Confidence 776554333332 33334445555677888888876 367999999999999999999999999999999988775433
Q ss_pred hhhhhcCCCCCCCCCCccccCCCccccCC-CccccccccccccccccccCCCCch-hhHHHHHHhhccccEEEEcCCchh
Q 036520 157 PECLVGDGQKRVRPSAESLTSVPEWVDFP-SSVALRTFDAIGMHHGFYGMNASGI-TDAHRTAEILHSCQAMAIRSCPEF 234 (473)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~l 234 (473)
.....+.. .+.... .+..+|.. ....++..+++..+. .. ..+ .+...+.......+++++|||.+|
T Consensus 160 ~~~~~~~~--~~~~~~-----~~~~iPg~p~~~~l~~~dlp~~~~---~~--~~~~~~~~~~~~~~~~a~~vlvNTf~eL 227 (491)
T PLN02534 160 IRLHNAHL--SVSSDS-----EPFVVPGMPQSIEITRAQLPGAFV---SL--PDLDDVRNKMREAESTAFGVVVNSFNEL 227 (491)
T ss_pred HHHhcccc--cCCCCC-----ceeecCCCCccccccHHHCChhhc---Cc--ccHHHHHHHHHhhcccCCEEEEecHHHh
Confidence 22111110 001100 11112321 112344445443221 00 112 222222223345679999999999
Q ss_pred hhHHHHHHHhhcCCCeEEeeccCCCCCC---C---C-CCCCchhhhhccccCCCCCcEEEEeecCcccCCHHHHHHHHHH
Q 036520 235 EGEYLNLLEKLTGKPVIPVGLLTPEPNS---A---K-GRDHQISKIFQWLDEQKPRSVVFVGFGSECKLSKDQVYEIAYG 307 (473)
Q Consensus 235 e~~~~~~~~~~~~~~~~~vGp~~~~~~~---~---~-~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~a 307 (473)
|+.+++.+++.++++++.|||+...... . . ......+++.+||+++++++||||||||.....++++.+++.+
T Consensus 228 E~~~l~~l~~~~~~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~g 307 (491)
T PLN02534 228 EHGCAEAYEKAIKKKVWCVGPVSLCNKRNLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLG 307 (491)
T ss_pred hHHHHHHHHhhcCCcEEEECcccccccccccccccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHH
Confidence 9999999988776789999999742210 0 0 0011235699999999988999999999999999999999999
Q ss_pred HhcCCCCEEEEEcCCCCCCCccc-cCchhhhhhcCCCceEEecccchHHHhhCCCcceeeeccCchhHHHHHhhCCceec
Q 036520 308 LELSGLPFLWALRKPEWATDDVD-ALPLGFADTIRGKGIVSIGWAPQLEILAHPSIGTSLFHAGWGSVIETLQFGHSLVV 386 (473)
Q Consensus 308 l~~~~~~~i~~~~~~~~~~~~~~-~~p~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~ 386 (473)
|+.++.+|||+++.+....+..+ .+|++|.++.+.+|+++.+|+||.+||+|+++++|||||||||++||+++|||||+
T Consensus 308 l~~~~~~flW~~r~~~~~~~~~~~~~p~gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~ 387 (491)
T PLN02534 308 LEASKKPFIWVIKTGEKHSELEEWLVKENFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMIT 387 (491)
T ss_pred HHhCCCCEEEEEecCccccchhhhcCchhhHHhhccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCCEEe
Confidence 99999999999985322101112 36889998888889999999999999999999999999999999999999999999
Q ss_pred cccccccccceeeeeec-ceEEEEecC-------CC--C-CcCHHHHHHHHHHHhc--CcchHHHHHHHHHHHHHhc---
Q 036520 387 LPLIIDQPLNARLLVDK-DLAVQVERK-------DD--G-SFTRDGIAKALRLATV--SEEGEKLRVRAREAANTFN--- 450 (473)
Q Consensus 387 ~P~~~DQ~~na~~v~~~-G~G~~l~~~-------~~--~-~~t~~~l~~~i~~ll~--~~~~~~~~~~a~~~~~~~~--- 450 (473)
+|+++||+.||+++++. |+|+.+... ++ + .+++++|+++|+++|. ++++.++|+||++|++.++
T Consensus 388 ~P~~~dq~~na~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~~a~~Av 467 (491)
T PLN02534 388 WPLFAEQFLNEKLIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQELGVMARKAM 467 (491)
T ss_pred ccccccHHHHHHHHHHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHh
Confidence 99999999999998755 999988421 11 2 4899999999999997 5567899999999998865
Q ss_pred -cCCCcHHHHHHHHHHHHHhc
Q 036520 451 -DKKLHDDYSVRFVEYLKINV 470 (473)
Q Consensus 451 -~~~~~~~~~~~~~~~~~~~~ 470 (473)
+.|++.+++++|++.+....
T Consensus 468 ~~GGSS~~nl~~fv~~i~~~~ 488 (491)
T PLN02534 468 ELGGSSHINLSILIQDVLKQQ 488 (491)
T ss_pred cCCCcHHHHHHHHHHHHHHHh
Confidence 56788999999999997643
No 9
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=8.1e-63 Score=485.11 Aligned_cols=436 Identities=24% Similarity=0.362 Sum_probs=325.8
Q ss_pred CCccEEEEecCCCccChHHHHHHHHHHH-hCCCeEEEEeCCCccccCCCCCCCcccCCCeEEEEecCCccccccccCCCC
Q 036520 2 ARKLHVVMLPWSAFGHLMPFFQLSIALA-KSGVKVSFISTPKNIQRLPKPAPESEVAALINFVEFPLPASAALDDKLLLP 80 (473)
Q Consensus 2 ~~~~~vl~~~~~~~gH~~p~l~la~~L~-~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~l~ 80 (473)
..+.||+++|++++||++|+++||+.|+ .+|++|||++++.+...+..... ..+++++..+|+|.. ++++
T Consensus 3 ~~~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~---~~~~i~~~~lp~p~~------~glp 73 (481)
T PLN02992 3 ITKPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFL---NSTGVDIVGLPSPDI------SGLV 73 (481)
T ss_pred CCCcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhccc---cCCCceEEECCCccc------cCCC
Confidence 3567999999999999999999999998 68999999999977544422211 113688998886655 5654
Q ss_pred CCCccCCCCChhhHHHHHHHHhhhhhHHHHHHHhC--CCcEEEEcCCcchHHHHHHHcCCCeEEEecchhHHHHHHhchh
Q 036520 81 EGAEATVDIPSENIQYLKIAYDLLQHPFKQFVAQQ--SVDWIIVDVMSHWAGKIAQEYHVPLLLFSAFSAAAFQFIANPE 158 (473)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~--~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~ 158 (473)
.... +....+......+.+.+++++++. +|+|||+|.+..|+..+|+++|||++.|+++++..+..+.+..
T Consensus 74 ~~~~-------~~~~~~~~~~~~~~~~~~~~l~~~~~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~ 146 (481)
T PLN02992 74 DPSA-------HVVTKIGVIMREAVPTLRSKIAEMHQKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYP 146 (481)
T ss_pred CCCc-------cHHHHHHHHHHHhHHHHHHHHHhcCCCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhh
Confidence 2111 111233334445667788888763 6899999999999999999999999999999998876554332
Q ss_pred hhhcCCCCCCCCCCccccCCCccccCCCccccccccccccccccccCCCCchhhHHHHHHhhccccEEEEcCCchhhhHH
Q 036520 159 CLVGDGQKRVRPSAESLTSVPEWVDFPSSVALRTFDAIGMHHGFYGMNASGITDAHRTAEILHSCQAMAIRSCPEFEGEY 238 (473)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~ 238 (473)
.+.... .... ..+..+..+|. ...++..+++..+ .......+....+......+++++++|||.+||+++
T Consensus 147 ~~~~~~----~~~~-~~~~~~~~iPg--~~~l~~~dlp~~~---~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~ 216 (481)
T PLN02992 147 TLDKDI----KEEH-TVQRKPLAMPG--CEPVRFEDTLDAY---LVPDEPVYRDFVRHGLAYPKADGILVNTWEEMEPKS 216 (481)
T ss_pred hhcccc----cccc-ccCCCCcccCC--CCccCHHHhhHhh---cCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHH
Confidence 111000 0000 00000112332 2223444444311 111111233444444556778999999999999999
Q ss_pred HHHHHhh--c----CCCeEEeeccCCCCCCCCCCCCchhhhhccccCCCCCcEEEEeecCcccCCHHHHHHHHHHHhcCC
Q 036520 239 LNLLEKL--T----GKPVIPVGLLTPEPNSAKGRDHQISKIFQWLDEQKPRSVVFVGFGSECKLSKDQVYEIAYGLELSG 312 (473)
Q Consensus 239 ~~~~~~~--~----~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~ 312 (473)
+++++.. . .++++.|||+...... ...++++.+||+++++++||||||||...++.+++.+++.+|+.++
T Consensus 217 l~~l~~~~~~~~~~~~~v~~VGPl~~~~~~----~~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~ 292 (481)
T PLN02992 217 LKSLQDPKLLGRVARVPVYPIGPLCRPIQS----SKTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQ 292 (481)
T ss_pred HHHHhhccccccccCCceEEecCccCCcCC----CcchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcC
Confidence 9988652 1 2469999999753221 1234569999999988899999999999999999999999999999
Q ss_pred CCEEEEEcCCCCC--------------CC-ccccCchhhhhhcCCCceEEecccchHHHhhCCCcceeeeccCchhHHHH
Q 036520 313 LPFLWALRKPEWA--------------TD-DVDALPLGFADTIRGKGIVSIGWAPQLEILAHPSIGTSLFHAGWGSVIET 377 (473)
Q Consensus 313 ~~~i~~~~~~~~~--------------~~-~~~~~p~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~ItHGG~~s~~ea 377 (473)
++|||+++..... .+ ....+|++|+++.+++|+++.+|+||.+||+|+++++|||||||||++||
T Consensus 293 ~~flW~~r~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Ea 372 (481)
T PLN02992 293 QRFVWVVRPPVDGSACSAYFSANGGETRDNTPEYLPEGFVSRTHDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLES 372 (481)
T ss_pred CCEEEEEeCCcccccccccccCcccccccchhhhCCHHHHHHhcCCCEEEeecCCHHHHhCCcccCeeEecCchhHHHHH
Confidence 9999999742110 00 12358999999999999999999999999999999999999999999999
Q ss_pred HhhCCceeccccccccccceeeee-ecceEEEEecCCCCCcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHhc------
Q 036520 378 LQFGHSLVVLPLIIDQPLNARLLV-DKDLAVQVERKDDGSFTRDGIAKALRLATVSEEGEKLRVRAREAANTFN------ 450 (473)
Q Consensus 378 l~~GvP~l~~P~~~DQ~~na~~v~-~~G~G~~l~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~------ 450 (473)
+++|||||++|+++||+.||++++ ++|+|+.++.. ++.++.++|.++|+++|.+++..++|++++++++.++
T Consensus 373 l~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~-~~~~~~~~l~~av~~vm~~~~g~~~r~~a~~~~~~a~~Av~~~ 451 (481)
T PLN02992 373 VVGGVPMIAWPLFAEQNMNAALLSDELGIAVRSDDP-KEVISRSKIEALVRKVMVEEEGEEMRRKVKKLRDTAEMSLSID 451 (481)
T ss_pred HHcCCCEEecCccchhHHHHHHHHHHhCeeEEecCC-CCcccHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999995 88999999763 1268999999999999986666799999999998865
Q ss_pred cCCCcHHHHHHHHHHHHH
Q 036520 451 DKKLHDDYSVRFVEYLKI 468 (473)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~ 468 (473)
++|++..+++.+++.+..
T Consensus 452 ~GGSS~~~l~~~v~~~~~ 469 (481)
T PLN02992 452 GGGVAHESLCRVTKECQR 469 (481)
T ss_pred CCCchHHHHHHHHHHHHH
Confidence 256678899999888765
No 10
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=7.4e-62 Score=485.92 Aligned_cols=450 Identities=25% Similarity=0.421 Sum_probs=324.3
Q ss_pred CccEEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCc-ccCC--CeEEEEecCCccccccccCCC
Q 036520 3 RKLHVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPKNIQRLPKPAPES-EVAA--LINFVEFPLPASAALDDKLLL 79 (473)
Q Consensus 3 ~~~~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~-~~~~--~i~~~~i~~~~~~~~~~~~~l 79 (473)
+++||+++|++++||++|++.||+.|+.|||+|||++++.+...+++.+... ...+ .+.+..+++|..+ +++
T Consensus 4 ~~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~-----~gl 78 (482)
T PLN03007 4 EKLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVE-----LGL 78 (482)
T ss_pred CCcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCc-----CCC
Confidence 3469999999999999999999999999999999999998876555432100 0011 2456666665441 356
Q ss_pred CCCCccCCCC-------ChhhHHHHHHHHhhhhhHHHHHHHhCCCcEEEEcCCcchHHHHHHHcCCCeEEEecchhHHHH
Q 036520 80 PEGAEATVDI-------PSENIQYLKIAYDLLQHPFKQFVAQQSVDWIIVDVMSHWAGKIAQEYHVPLLLFSAFSAAAFQ 152 (473)
Q Consensus 80 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~ 152 (473)
+.+.+..... ...+...+......+.+.+.+++++.+|||||+|.+..|+..+|+++|||+++|++++++...
T Consensus 79 P~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~~ 158 (482)
T PLN03007 79 PEGCENVDFITSNNNDDSGDLFLKFLFSTKYFKDQLEKLLETTRPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSLC 158 (482)
T ss_pred CCCcccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHHH
Confidence 6554332211 112233333445567778888888889999999999999999999999999999999988766
Q ss_pred HHhchhhhhcCCCCCCCCCCccccCCCccccCC-CccccccccccccccccccCCCCchhhHHHHHHhhccccEEEEcCC
Q 036520 153 FIANPECLVGDGQKRVRPSAESLTSVPEWVDFP-SSVALRTFDAIGMHHGFYGMNASGITDAHRTAEILHSCQAMAIRSC 231 (473)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 231 (473)
.........+... +. ... .+..+|.. ..+.++..++... ..................+.+++++|++
T Consensus 159 ~~~~~~~~~~~~~--~~--~~~---~~~~~pg~p~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~vl~Nt~ 226 (482)
T PLN03007 159 ASYCIRVHKPQKK--VA--SSS---EPFVIPDLPGDIVITEEQINDA-----DEESPMGKFMKEVRESEVKSFGVLVNSF 226 (482)
T ss_pred HHHHHHhcccccc--cC--CCC---ceeeCCCCCCccccCHHhcCCC-----CCchhHHHHHHHHHhhcccCCEEEEECH
Confidence 5443321110000 00 000 00012211 1112222222211 0111111333344455677889999999
Q ss_pred chhhhHHHHHHHhhcCCCeEEeeccCCCCCC-------CCCCCCchhhhhccccCCCCCcEEEEeecCcccCCHHHHHHH
Q 036520 232 PEFEGEYLNLLEKLTGKPVIPVGLLTPEPNS-------AKGRDHQISKIFQWLDEQKPRSVVFVGFGSECKLSKDQVYEI 304 (473)
Q Consensus 232 ~~le~~~~~~~~~~~~~~~~~vGp~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~ 304 (473)
.++|+++.+.+++....++++|||+...... ....+..++++.+||++++++++|||||||+...+.+++.++
T Consensus 227 ~~le~~~~~~~~~~~~~~~~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~ 306 (482)
T PLN03007 227 YELESAYADFYKSFVAKRAWHIGPLSLYNRGFEEKAERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFEI 306 (482)
T ss_pred HHHHHHHHHHHHhccCCCEEEEccccccccccccccccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHHH
Confidence 9999998888887666679999997643211 000012346799999999889999999999998889999999
Q ss_pred HHHHhcCCCCEEEEEcCCCCCCCccccCchhhhhhcCCCceEEecccchHHHhhCCCcceeeeccCchhHHHHHhhCCce
Q 036520 305 AYGLELSGLPFLWALRKPEWATDDVDALPLGFADTIRGKGIVSIGWAPQLEILAHPSIGTSLFHAGWGSVIETLQFGHSL 384 (473)
Q Consensus 305 ~~al~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~ 384 (473)
+.+|+.++++|||+++......+....+|++|.++.+.+|+++.+|+||.+||+|+++++|||||||||++||+++||||
T Consensus 307 ~~~l~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GVP~ 386 (482)
T PLN03007 307 AAGLEGSGQNFIWVVRKNENQGEKEEWLPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAAGLPM 386 (482)
T ss_pred HHHHHHCCCCEEEEEecCCcccchhhcCCHHHHHHhccCCEEEecCCCHHHHhccCccceeeecCcchHHHHHHHcCCCe
Confidence 99999999999999986422101123589999999999999999999999999999999999999999999999999999
Q ss_pred eccccccccccceeeeee---cceEEEEecC---CCCCcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHhc----cCCC
Q 036520 385 VVLPLIIDQPLNARLLVD---KDLAVQVERK---DDGSFTRDGIAKALRLATVSEEGEKLRVRAREAANTFN----DKKL 454 (473)
Q Consensus 385 l~~P~~~DQ~~na~~v~~---~G~G~~l~~~---~~~~~t~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~----~~~~ 454 (473)
|++|+++||+.||+++++ .|+|+..... +.+.+++++|+++|+++|.+++..+||+||+++++.++ +.|+
T Consensus 387 v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~~~r~~a~~~~~~a~~a~~~gGs 466 (482)
T PLN03007 387 VTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIVGEEAEERRLRAKKLAEMAKAAVEEGGS 466 (482)
T ss_pred eeccchhhhhhhHHHHHHhhcceeEeccccccccccCcccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 999999999999998864 4555432210 11368999999999999985555699999999999876 4577
Q ss_pred cHHHHHHHHHHHHHh
Q 036520 455 HDDYSVRFVEYLKIN 469 (473)
Q Consensus 455 ~~~~~~~~~~~~~~~ 469 (473)
+..+++.+++.+...
T Consensus 467 S~~~l~~~v~~~~~~ 481 (482)
T PLN03007 467 SFNDLNKFMEELNSR 481 (482)
T ss_pred HHHHHHHHHHHHHhc
Confidence 889999999988764
No 11
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=7e-62 Score=476.24 Aligned_cols=424 Identities=23% Similarity=0.368 Sum_probs=304.5
Q ss_pred CCCccEEEEecCCCccChHHHHHHHHHHHhCC--CeEEE--EeCCCccccCCCCCCC-cccCCCeEEEEecCCccccccc
Q 036520 1 MARKLHVVMLPWSAFGHLMPFFQLSIALAKSG--VKVSF--ISTPKNIQRLPKPAPE-SEVAALINFVEFPLPASAALDD 75 (473)
Q Consensus 1 m~~~~~vl~~~~~~~gH~~p~l~la~~L~~~G--h~Vt~--~~~~~~~~~~~~~~~~-~~~~~~i~~~~i~~~~~~~~~~ 75 (473)
|+++ ||+++|++++||++||++||+.|+.+| +.||+ +++..+...+...... .+..++|++..+|.
T Consensus 1 ~~~~-Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~-------- 71 (451)
T PLN03004 1 MGEE-AIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYISSVSSSFPSITFHHLPA-------- 71 (451)
T ss_pred CCCc-EEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhccccCCCCCeEEEEcCC--------
Confidence 5555 999999999999999999999999998 55665 4443322211110000 01124699998873
Q ss_pred cCCCCCCCccCCCCChhhHHHHHHHHhhhhhHHHHHHHhC----CCcEEEEcCCcchHHHHHHHcCCCeEEEecchhHHH
Q 036520 76 KLLLPEGAEATVDIPSENIQYLKIAYDLLQHPFKQFVAQQ----SVDWIIVDVMSHWAGKIAQEYHVPLLLFSAFSAAAF 151 (473)
Q Consensus 76 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~----~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~ 151 (473)
+.+....... .......+......+.+.+.+++++. +++|||+|.+..|+..+|+++|||++.|++++++.+
T Consensus 72 --~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~ 147 (451)
T PLN03004 72 --VTPYSSSSTS--RHHHESLLLEILCFSNPSVHRTLFSLSRNFNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACL 147 (451)
T ss_pred --CCCCCCcccc--ccCHHHHHHHHHHhhhHHHHHHHHhcCCCCCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHH
Confidence 3221111011 11222233344445666666666653 349999999999999999999999999999999988
Q ss_pred HHHhchhhhhcCCCCCCCCCCccccCCCccccCCCccccccccccccccccccCCCCchhhHHHHHHhhccccEEEEcCC
Q 036520 152 QFIANPECLVGDGQKRVRPSAESLTSVPEWVDFPSSVALRTFDAIGMHHGFYGMNASGITDAHRTAEILHSCQAMAIRSC 231 (473)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 231 (473)
..+.+...... .. + ...... ...+..|+...++..+++.... ......+....+......+.+++++|||
T Consensus 148 ~~~~~~~~~~~--~~--~--~~~~~~-~~~v~iPg~p~l~~~dlp~~~~---~~~~~~~~~~~~~~~~~~~~~~vl~NTf 217 (451)
T PLN03004 148 AFSFYLPTIDE--TT--P--GKNLKD-IPTVHIPGVPPMKGSDMPKAVL---ERDDEVYDVFIMFGKQLSKSSGIIINTF 217 (451)
T ss_pred HHHHHHHhccc--cc--c--cccccc-CCeecCCCCCCCChHHCchhhc---CCchHHHHHHHHHHHhhcccCeeeeeeH
Confidence 87765431110 00 0 000000 0111122222345555554331 1111112333444455667889999999
Q ss_pred chhhhHHHHHHHhhcC-CCeEEeeccCCCCCCCCCCCCchhhhhccccCCCCCcEEEEeecCcccCCHHHHHHHHHHHhc
Q 036520 232 PEFEGEYLNLLEKLTG-KPVIPVGLLTPEPNSAKGRDHQISKIFQWLDEQKPRSVVFVGFGSECKLSKDQVYEIAYGLEL 310 (473)
Q Consensus 232 ~~le~~~~~~~~~~~~-~~~~~vGp~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~ 310 (473)
++||+++++.+++.+. ++++.|||+.............++++.+||++++++++|||||||+..++.+++++++.+|+.
T Consensus 218 ~eLE~~~l~~l~~~~~~~~v~~vGPl~~~~~~~~~~~~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~ 297 (451)
T PLN03004 218 DALENRAIKAITEELCFRNIYPIGPLIVNGRIEDRNDNKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEK 297 (451)
T ss_pred HHhHHHHHHHHHhcCCCCCEEEEeeeccCccccccccchhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHH
Confidence 9999999999977543 579999999753221100011235699999999888999999999998999999999999999
Q ss_pred CCCCEEEEEcCCCCCCC---ccc-cCchhhhhhcCCCceEEecccchHHHhhCCCcceeeeccCchhHHHHHhhCCceec
Q 036520 311 SGLPFLWALRKPEWATD---DVD-ALPLGFADTIRGKGIVSIGWAPQLEILAHPSIGTSLFHAGWGSVIETLQFGHSLVV 386 (473)
Q Consensus 311 ~~~~~i~~~~~~~~~~~---~~~-~~p~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~ 386 (473)
++++|||+++.....+. ... .+|++|+++.+.+|+++.+|+||.+||+|+++++|||||||||++||+++|||||+
T Consensus 298 s~~~FlW~~r~~~~~~~~~~~~~~~lp~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~ 377 (451)
T PLN03004 298 SGQRFLWVVRNPPELEKTELDLKSLLPEGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVA 377 (451)
T ss_pred CCCCEEEEEcCCccccccccchhhhCChHHHHhccCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEe
Confidence 99999999985421100 112 38999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccceeeeee-cceEEEEecCCCCCcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHhc
Q 036520 387 LPLIIDQPLNARLLVD-KDLAVQVERKDDGSFTRDGIAKALRLATVSEEGEKLRVRAREAANTFN 450 (473)
Q Consensus 387 ~P~~~DQ~~na~~v~~-~G~G~~l~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~ 450 (473)
+|+++||+.||+++++ .|+|+.++..+++.+++++|+++|+++|. +++||+|++++++..+
T Consensus 378 ~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~e~l~~av~~vm~---~~~~r~~a~~~~~~a~ 439 (451)
T PLN03004 378 WPLYAEQRFNRVMIVDEIKIAISMNESETGFVSSTEVEKRVQEIIG---ECPVRERTMAMKNAAE 439 (451)
T ss_pred ccccccchhhHHHHHHHhCceEEecCCcCCccCHHHHHHHHHHHhc---CHHHHHHHHHHHHHHH
Confidence 9999999999999986 59999998642336899999999999999 7899999999999865
No 12
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=1.8e-61 Score=476.94 Aligned_cols=429 Identities=22% Similarity=0.321 Sum_probs=314.9
Q ss_pred CCCccEEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCcccCCCeEEEEecCCccccccccCCCC
Q 036520 1 MARKLHVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPKNIQRLPKPAPESEVAALINFVEFPLPASAALDDKLLLP 80 (473)
Q Consensus 1 m~~~~~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~l~ 80 (473)
|+.+.||+++|++++||++||++||+.|+.+|++|||++++.+...+..... ..++++++.+| ++++
T Consensus 3 ~~~~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~---~~~~i~~v~lp----------~g~~ 69 (448)
T PLN02562 3 VTQRPKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLD---PKLGITFMSIS----------DGQD 69 (448)
T ss_pred CCCCcEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccC---CCCCEEEEECC----------CCCC
Confidence 6778899999999999999999999999999999999999887655443211 11368898887 4443
Q ss_pred CCCccCCCCChhhHHHHHHHHhhhhhHHHHHHHhC----CCcEEEEcCCcchHHHHHHHcCCCeEEEecchhHHHHHHhc
Q 036520 81 EGAEATVDIPSENIQYLKIAYDLLQHPFKQFVAQQ----SVDWIIVDVMSHWAGKIAQEYHVPLLLFSAFSAAAFQFIAN 156 (473)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~----~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~ 156 (473)
.+. +.+....+......+.+.+.+++++. +++|||+|.+..|+..+|+++|||++.|+++++.....+.+
T Consensus 70 ~~~------~~~~~~l~~a~~~~~~~~l~~ll~~l~~~~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~ 143 (448)
T PLN02562 70 DDP------PRDFFSIENSMENTMPPQLERLLHKLDEDGEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQA 143 (448)
T ss_pred CCc------cccHHHHHHHHHHhchHHHHHHHHHhcCCCCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHH
Confidence 221 11222223222234677777777764 23899999999999999999999999999999887776554
Q ss_pred hhhhhcCCCCCCCCCCc-cccCCCccccCCCccccccccccccccccccCCCCchhhHHHHHHhhccccEEEEcCCchhh
Q 036520 157 PECLVGDGQKRVRPSAE-SLTSVPEWVDFPSSVALRTFDAIGMHHGFYGMNASGITDAHRTAEILHSCQAMAIRSCPEFE 235 (473)
Q Consensus 157 ~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le 235 (473)
...+...+... .... ....+...+|. ...++..+++.++... ......+..+.+......+.+++++|||.+||
T Consensus 144 ~~~~~~~~~~~--~~~~~~~~~~~~~~Pg--~~~l~~~dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE 218 (448)
T PLN02562 144 IPELVRTGLIS--ETGCPRQLEKICVLPE--QPLLSTEDLPWLIGTP-KARKARFKFWTRTLERTKSLRWILMNSFKDEE 218 (448)
T ss_pred HHHHhhccccc--cccccccccccccCCC--CCCCChhhCcchhcCC-CcchHHHHHHHHHHhccccCCEEEEcChhhhC
Confidence 43222111110 0000 00000012222 2224555555433110 00111233444444556678899999999999
Q ss_pred hHHHHHHHhh----cCCCeEEeeccCCCCCC---CCCCCCchhhhhccccCCCCCcEEEEeecCcc-cCCHHHHHHHHHH
Q 036520 236 GEYLNLLEKL----TGKPVIPVGLLTPEPNS---AKGRDHQISKIFQWLDEQKPRSVVFVGFGSEC-KLSKDQVYEIAYG 307 (473)
Q Consensus 236 ~~~~~~~~~~----~~~~~~~vGp~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~-~~~~~~~~~~~~a 307 (473)
+.+++..... ..++++.|||++..... .......+.++.+||++++++++|||||||+. ..+.+++++++.+
T Consensus 219 ~~~~~~~~~~~~~~~~~~v~~iGpl~~~~~~~~~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~ 298 (448)
T PLN02562 219 YDDVKNHQASYNNGQNPQILQIGPLHNQEATTITKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALA 298 (448)
T ss_pred HHHHHHHHhhhccccCCCEEEecCcccccccccCCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHH
Confidence 9888866532 34679999999865421 10001234567899999988899999999986 5789999999999
Q ss_pred HhcCCCCEEEEEcCCCCCCCccccCchhhhhhcCCCceEEecccchHHHhhCCCcceeeeccCchhHHHHHhhCCceecc
Q 036520 308 LELSGLPFLWALRKPEWATDDVDALPLGFADTIRGKGIVSIGWAPQLEILAHPSIGTSLFHAGWGSVIETLQFGHSLVVL 387 (473)
Q Consensus 308 l~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~ 387 (473)
|++++++|||+++.+. ...+|++++++.. +|+++.+|+||.+||+|+++++|||||||||++||+++|||||++
T Consensus 299 l~~~g~~fiW~~~~~~-----~~~l~~~~~~~~~-~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~ 372 (448)
T PLN02562 299 LEASGRPFIWVLNPVW-----REGLPPGYVERVS-KQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCY 372 (448)
T ss_pred HHHCCCCEEEEEcCCc-----hhhCCHHHHHHhc-cCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEeC
Confidence 9999999999997531 2347877777764 577888999999999999999999999999999999999999999
Q ss_pred ccccccccceeeeeec-ceEEEEecCCCCCcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHhccC---CCcHHHHHHHH
Q 036520 388 PLIIDQPLNARLLVDK-DLAVQVERKDDGSFTRDGIAKALRLATVSEEGEKLRVRAREAANTFNDK---KLHDDYSVRFV 463 (473)
Q Consensus 388 P~~~DQ~~na~~v~~~-G~G~~l~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ 463 (473)
|+++||+.||+++++. |+|+.+. .+++++|.++|+++|+ +++||+||+++++.+.+. |++.++++.++
T Consensus 373 P~~~DQ~~na~~~~~~~g~g~~~~-----~~~~~~l~~~v~~~l~---~~~~r~~a~~l~~~~~~~~~gGSS~~nl~~~v 444 (448)
T PLN02562 373 PVAGDQFVNCAYIVDVWKIGVRIS-----GFGQKEVEEGLRKVME---DSGMGERLMKLRERAMGEEARLRSMMNFTTLK 444 (448)
T ss_pred CcccchHHHHHHHHHHhCceeEeC-----CCCHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 9999999999999875 9987773 5799999999999999 789999999999988643 68889999999
Q ss_pred HHHH
Q 036520 464 EYLK 467 (473)
Q Consensus 464 ~~~~ 467 (473)
+.++
T Consensus 445 ~~~~ 448 (448)
T PLN02562 445 DELK 448 (448)
T ss_pred HHhC
Confidence 8763
No 13
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=2.5e-61 Score=476.37 Aligned_cols=430 Identities=23% Similarity=0.332 Sum_probs=315.5
Q ss_pred CCccEEEEecCCCccChHHHHHHHHH--HHhCCCeEEEEeCCCccccCCCCCCCcccCCCeEEEEecCCccccccccCCC
Q 036520 2 ARKLHVVMLPWSAFGHLMPFFQLSIA--LAKSGVKVSFISTPKNIQRLPKPAPESEVAALINFVEFPLPASAALDDKLLL 79 (473)
Q Consensus 2 ~~~~~vl~~~~~~~gH~~p~l~la~~--L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~l 79 (473)
..+.||+++|++++||++|+++||+. |+++|+.|||++++.+...+..... ....+++..++ +++
T Consensus 6 ~~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~~~---~~~~~~~~~~~----------~gl 72 (456)
T PLN02210 6 GQETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTVEK---PRRPVDLVFFS----------DGL 72 (456)
T ss_pred CCCCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhccccC---CCCceEEEECC----------CCC
Confidence 45679999999999999999999999 5689999999999987665533211 11346666555 666
Q ss_pred CCCCccCCCCChhhHHHHHHHHhhhhhHHHHHHHhCCCcEEEEcCCcchHHHHHHHcCCCeEEEecchhHHHHHHhchhh
Q 036520 80 PEGAEATVDIPSENIQYLKIAYDLLQHPFKQFVAQQSVDWIIVDVMSHWAGKIAQEYHVPLLLFSAFSAAAFQFIANPEC 159 (473)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~ 159 (473)
+.+.+ .....++....+.+.+.+.+++++.+|||||+|.+..|+..+|+++|||++.|+++++..+....+...
T Consensus 73 p~~~~------~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~ 146 (456)
T PLN02210 73 PKDDP------RAPETLLKSLNKVGAKNLSKIIEEKRYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYM 146 (456)
T ss_pred CCCcc------cCHHHHHHHHHHhhhHHHHHHHhcCCCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhh
Confidence 65432 112234444444567778888888899999999999999999999999999999999988776554321
Q ss_pred hhcCCCCCCCCCCccccCCCccccCCCccccccccccccccccccCCCCch-hhHHHHHHhhccccEEEEcCCchhhhHH
Q 036520 160 LVGDGQKRVRPSAESLTSVPEWVDFPSSVALRTFDAIGMHHGFYGMNASGI-TDAHRTAEILHSCQAMAIRSCPEFEGEY 238 (473)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~le~~~ 238 (473)
. .+. ++...+ .. .+..+|. ...++..+++..+ .......+ ....+........+++++|||.++|+++
T Consensus 147 ~--~~~--~~~~~~-~~-~~~~~Pg--l~~~~~~dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~ 215 (456)
T PLN02210 147 K--TNS--FPDLED-LN-QTVELPA--LPLLEVRDLPSFM---LPSGGAHFNNLMAEFADCLRYVKWVLVNSFYELESEI 215 (456)
T ss_pred c--cCC--CCcccc-cC-CeeeCCC--CCCCChhhCChhh---hcCCchHHHHHHHHHHHhcccCCEEEEeCHHHHhHHH
Confidence 0 010 000000 00 0111222 1223444444322 11111112 2222343445667899999999999999
Q ss_pred HHHHHhhcCCCeEEeeccCCCC----CCC---C----CCCCchhhhhccccCCCCCcEEEEeecCcccCCHHHHHHHHHH
Q 036520 239 LNLLEKLTGKPVIPVGLLTPEP----NSA---K----GRDHQISKIFQWLDEQKPRSVVFVGFGSECKLSKDQVYEIAYG 307 (473)
Q Consensus 239 ~~~~~~~~~~~~~~vGp~~~~~----~~~---~----~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~a 307 (473)
++.+++ . +++++|||+.+.. ... . .....++++.+||++++++++|||||||....+.+++++++.+
T Consensus 216 ~~~l~~-~-~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~ 293 (456)
T PLN02210 216 IESMAD-L-KPVIPIGPLVSPFLLGDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKA 293 (456)
T ss_pred HHHHhh-c-CCEEEEcccCchhhcCcccccccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHH
Confidence 998876 3 5699999997421 110 0 0012346789999999888999999999999999999999999
Q ss_pred HhcCCCCEEEEEcCCCCCCCccccCchhhhhhcCCCceEEecccchHHHhhCCCcceeeeccCchhHHHHHhhCCceecc
Q 036520 308 LELSGLPFLWALRKPEWATDDVDALPLGFADTIRGKGIVSIGWAPQLEILAHPSIGTSLFHAGWGSVIETLQFGHSLVVL 387 (473)
Q Consensus 308 l~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~ 387 (473)
|+.++.+|||+++.... ...+..+.++.+.++.++.+|+||.+||+|+++++|||||||||++||+++|||||++
T Consensus 294 l~~~~~~flw~~~~~~~-----~~~~~~~~~~~~~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~ 368 (456)
T PLN02210 294 LKNRGVPFLWVIRPKEK-----AQNVQVLQEMVKEGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAY 368 (456)
T ss_pred HHhCCCCEEEEEeCCcc-----ccchhhHHhhccCCCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEec
Confidence 99999999999975321 1233455555533344667999999999999999999999999999999999999999
Q ss_pred ccccccccceeeeee-cceEEEEecCC-CCCcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHhc----cCCCcHHHHHH
Q 036520 388 PLIIDQPLNARLLVD-KDLAVQVERKD-DGSFTRDGIAKALRLATVSEEGEKLRVRAREAANTFN----DKKLHDDYSVR 461 (473)
Q Consensus 388 P~~~DQ~~na~~v~~-~G~G~~l~~~~-~~~~t~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~ 461 (473)
|+++||+.||+++++ .|+|+.+...+ ++.+++++|+++|+++|.+++..++|+||++|++.++ ++|++..+++.
T Consensus 369 P~~~DQ~~na~~~~~~~g~G~~l~~~~~~~~~~~~~l~~av~~~m~~~~g~~~r~~a~~l~~~a~~Av~~gGSS~~~l~~ 448 (456)
T PLN02210 369 PSWTDQPIDARLLVDVFGIGVRMRNDAVDGELKVEEVERCIEAVTEGPAAADIRRRAAELKHVARLALAPGGSSARNLDL 448 (456)
T ss_pred ccccccHHHHHHHHHHhCeEEEEeccccCCcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 999999999999998 79999997532 3468999999999999986556679999999998865 56778899999
Q ss_pred HHHHHHH
Q 036520 462 FVEYLKI 468 (473)
Q Consensus 462 ~~~~~~~ 468 (473)
++++++.
T Consensus 449 ~v~~~~~ 455 (456)
T PLN02210 449 FISDITI 455 (456)
T ss_pred HHHHHhc
Confidence 9998753
No 14
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=3.6e-61 Score=474.79 Aligned_cols=442 Identities=24% Similarity=0.345 Sum_probs=320.8
Q ss_pred ccEEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCC-cc--c---CCCeEEEEecCCccccccccC
Q 036520 4 KLHVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPKNIQRLPKPAPE-SE--V---AALINFVEFPLPASAALDDKL 77 (473)
Q Consensus 4 ~~~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~-~~--~---~~~i~~~~i~~~~~~~~~~~~ 77 (473)
+.||+++|++++||++||++||+.|+.+|..|||++++.+...+...... +. . ...+++..+| +
T Consensus 7 ~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~p----------d 76 (480)
T PLN02555 7 LVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFE----------D 76 (480)
T ss_pred CCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCC----------C
Confidence 47999999999999999999999999999999999999766554321100 00 0 1225555554 6
Q ss_pred CCCCCCccCCCCChhhHHHHHHHHhhhhhHHHHHHHh----CCC-cEEEEcCCcchHHHHHHHcCCCeEEEecchhHHHH
Q 036520 78 LLPEGAEATVDIPSENIQYLKIAYDLLQHPFKQFVAQ----QSV-DWIIVDVMSHWAGKIAQEYHVPLLLFSAFSAAAFQ 152 (473)
Q Consensus 78 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~----~~p-D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~ 152 (473)
+++.+.+.. .+...++......+.+.+.++|++ .+| +|||+|.+..|+..+|+++|||+++|++++++.+.
T Consensus 77 glp~~~~~~----~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~ 152 (480)
T PLN02555 77 GWAEDDPRR----QDLDLYLPQLELVGKREIPNLVKRYAEQGRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFS 152 (480)
T ss_pred CCCCCcccc----cCHHHHHHHHHHhhhHHHHHHHHHHhccCCCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHH
Confidence 676554321 122234444444456667777764 244 99999999999999999999999999999999888
Q ss_pred HHhchhhhhcCCCCCCCCCCccccCCCccccCCCccccccccccccccccccCCCCchhhHHHHHHhhccccEEEEcCCc
Q 036520 153 FIANPECLVGDGQKRVRPSAESLTSVPEWVDFPSSVALRTFDAIGMHHGFYGMNASGITDAHRTAEILHSCQAMAIRSCP 232 (473)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 232 (473)
.+.+.. .+..+++...+ +..+-.+| +...++..+++.++.. .......+..+.+......+.+++++|||+
T Consensus 153 ~~~~~~----~~~~~~~~~~~--~~~~~~iP--glp~l~~~dlp~~~~~-~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~ 223 (480)
T PLN02555 153 AYYHYY----HGLVPFPTETE--PEIDVQLP--CMPLLKYDEIPSFLHP-SSPYPFLRRAILGQYKNLDKPFCILIDTFQ 223 (480)
T ss_pred HHHHHh----hcCCCcccccC--CCceeecC--CCCCcCHhhCcccccC-CCCchHHHHHHHHHHHhcccCCEEEEEchH
Confidence 765542 11000000000 00111123 2223555666554321 001111122233333455678899999999
Q ss_pred hhhhHHHHHHHhhcCCCeEEeeccCCCCCC--C---CCCCCchhhhhccccCCCCCcEEEEeecCcccCCHHHHHHHHHH
Q 036520 233 EFEGEYLNLLEKLTGKPVIPVGLLTPEPNS--A---KGRDHQISKIFQWLDEQKPRSVVFVGFGSECKLSKDQVYEIAYG 307 (473)
Q Consensus 233 ~le~~~~~~~~~~~~~~~~~vGp~~~~~~~--~---~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~a 307 (473)
+||+++++.++... + ++.|||+...... . ......++++.+||++++++++|||||||+...+.+++.+++.+
T Consensus 224 eLE~~~~~~l~~~~-~-v~~iGPl~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~ 301 (480)
T PLN02555 224 ELEKEIIDYMSKLC-P-IKPVGPLFKMAKTPNSDVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYG 301 (480)
T ss_pred HHhHHHHHHHhhCC-C-EEEeCcccCccccccccccccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHH
Confidence 99999999887643 3 9999999753211 0 00012346799999999888899999999999999999999999
Q ss_pred HhcCCCCEEEEEcCCCCCC-CccccCchhhhhhcCCCceEEecccchHHHhhCCCcceeeeccCchhHHHHHhhCCceec
Q 036520 308 LELSGLPFLWALRKPEWAT-DDVDALPLGFADTIRGKGIVSIGWAPQLEILAHPSIGTSLFHAGWGSVIETLQFGHSLVV 386 (473)
Q Consensus 308 l~~~~~~~i~~~~~~~~~~-~~~~~~p~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~ 386 (473)
++.++++|||+++...... .....+|+++.++.+ +|.++.+|+||.+||.|+++++|||||||||++||+++|||||+
T Consensus 302 l~~~~~~flW~~~~~~~~~~~~~~~lp~~~~~~~~-~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~ 380 (480)
T PLN02555 302 VLNSGVSFLWVMRPPHKDSGVEPHVLPEEFLEKAG-DKGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVC 380 (480)
T ss_pred HHhcCCeEEEEEecCcccccchhhcCChhhhhhcC-CceEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCEEe
Confidence 9999999999997431110 012357888877664 45677799999999999999999999999999999999999999
Q ss_pred cccccccccceeeeeec-ceEEEEecC--CCCCcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHhc----cCCCcHHHH
Q 036520 387 LPLIIDQPLNARLLVDK-DLAVQVERK--DDGSFTRDGIAKALRLATVSEEGEKLRVRAREAANTFN----DKKLHDDYS 459 (473)
Q Consensus 387 ~P~~~DQ~~na~~v~~~-G~G~~l~~~--~~~~~t~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~ 459 (473)
+|+++||+.||+++++. |+|+.+... +.+.+++++|.++|+++|.+++..++|+||++|++.++ +.|++.+++
T Consensus 381 ~P~~~DQ~~Na~~~~~~~gvGv~l~~~~~~~~~v~~~~v~~~v~~vm~~~~g~~~r~ra~~l~~~a~~A~~egGSS~~~l 460 (480)
T PLN02555 381 FPQWGDQVTDAVYLVDVFKTGVRLCRGEAENKLITREEVAECLLEATVGEKAAELKQNALKWKEEAEAAVAEGGSSDRNF 460 (480)
T ss_pred CCCccccHHHHHHHHHHhCceEEccCCccccCcCcHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Confidence 99999999999999887 999999531 12368999999999999987667899999999999854 567889999
Q ss_pred HHHHHHHHHhcc
Q 036520 460 VRFVEYLKINVA 471 (473)
Q Consensus 460 ~~~~~~~~~~~~ 471 (473)
+.|++++....+
T Consensus 461 ~~~v~~i~~~~~ 472 (480)
T PLN02555 461 QEFVDKLVRKSV 472 (480)
T ss_pred HHHHHHHHhccc
Confidence 999999986543
No 15
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=6.8e-61 Score=468.63 Aligned_cols=435 Identities=25% Similarity=0.374 Sum_probs=319.8
Q ss_pred ccEEEEecCCCccChHHHHHHHHHHHhC-CCeEEEEeCCCccccCC-CCCCCcc-cCCCeEEEEecCCccccccccCCC-
Q 036520 4 KLHVVMLPWSAFGHLMPFFQLSIALAKS-GVKVSFISTPKNIQRLP-KPAPESE-VAALINFVEFPLPASAALDDKLLL- 79 (473)
Q Consensus 4 ~~~vl~~~~~~~gH~~p~l~la~~L~~~-Gh~Vt~~~~~~~~~~~~-~~~~~~~-~~~~i~~~~i~~~~~~~~~~~~~l- 79 (473)
+.||+++|++++||++||++||+.|+.+ |..|||++++....... ....... ..++|++..+|++.. +++
T Consensus 3 ~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~------~~l~ 76 (470)
T PLN03015 3 QPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAAARTTCQITEIPSVDV------DNLV 76 (470)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhccccccccccCCCceEEEECCCCcc------ccCC
Confidence 3599999999999999999999999987 99999998776553321 1101000 112599999985543 344
Q ss_pred CCCCccCCCCChhhHHHHHHHHhhhhhHHHHHHHhC--CCcEEEEcCCcchHHHHHHHcCCC-eEEEecchhHHHHHHhc
Q 036520 80 PEGAEATVDIPSENIQYLKIAYDLLQHPFKQFVAQQ--SVDWIIVDVMSHWAGKIAQEYHVP-LLLFSAFSAAAFQFIAN 156 (473)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~--~pD~vI~D~~~~~~~~~A~~lgiP-~v~~~~~~~~~~~~~~~ 156 (473)
+.+ . +....+....+.+.+.++++|++. +|+|||+|.+..|+..+|+++||| ++.+++++++....+.+
T Consensus 77 ~~~-------~-~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~ 148 (470)
T PLN03015 77 EPD-------A-TIFTKMVVKMRAMKPAVRDAVKSMKRKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVY 148 (470)
T ss_pred CCC-------c-cHHHHHHHHHHhchHHHHHHHHhcCCCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHh
Confidence 211 1 222234455566778888888865 689999999999999999999999 57787888777655544
Q ss_pred hhhhhcCCCCCCCCCCccccCCCccccCCCccccccccccccccccccCCCCchhhHHHHHHhhccccEEEEcCCchhhh
Q 036520 157 PECLVGDGQKRVRPSAESLTSVPEWVDFPSSVALRTFDAIGMHHGFYGMNASGITDAHRTAEILHSCQAMAIRSCPEFEG 236 (473)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~ 236 (473)
...+.. .. .......+. +-.+|. ...++..+++..+. ......+...........+.+++++|||++||+
T Consensus 149 l~~~~~--~~--~~~~~~~~~-~~~vPg--~p~l~~~dlp~~~~---~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~ 218 (470)
T PLN03015 149 LPVLDT--VV--EGEYVDIKE-PLKIPG--CKPVGPKELMETML---DRSDQQYKECVRSGLEVPMSDGVLVNTWEELQG 218 (470)
T ss_pred hhhhhc--cc--ccccCCCCC-eeeCCC--CCCCChHHCCHhhc---CCCcHHHHHHHHHHHhcccCCEEEEechHHHhH
Confidence 322110 00 000000011 112332 22355555554221 111111211112223467899999999999999
Q ss_pred HHHHHHHhhc------CCCeEEeeccCCCCCCCCCCCCchhhhhccccCCCCCcEEEEeecCcccCCHHHHHHHHHHHhc
Q 036520 237 EYLNLLEKLT------GKPVIPVGLLTPEPNSAKGRDHQISKIFQWLDEQKPRSVVFVGFGSECKLSKDQVYEIAYGLEL 310 (473)
Q Consensus 237 ~~~~~~~~~~------~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~ 310 (473)
.+++.+++.+ .++++.|||+...... ...++++.+||+++++++||||||||...++.+++.+++.+|+.
T Consensus 219 ~~~~~l~~~~~~~~~~~~~v~~VGPl~~~~~~----~~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~ 294 (470)
T PLN03015 219 NTLAALREDMELNRVMKVPVYPIGPIVRTNVH----VEKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLEL 294 (470)
T ss_pred HHHHHHHhhcccccccCCceEEecCCCCCccc----ccchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHh
Confidence 9999987752 2469999999743211 11234799999999889999999999999999999999999999
Q ss_pred CCCCEEEEEcCCCC--------CCCccccCchhhhhhcCCCceEEecccchHHHhhCCCcceeeeccCchhHHHHHhhCC
Q 036520 311 SGLPFLWALRKPEW--------ATDDVDALPLGFADTIRGKGIVSIGWAPQLEILAHPSIGTSLFHAGWGSVIETLQFGH 382 (473)
Q Consensus 311 ~~~~~i~~~~~~~~--------~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~ItHGG~~s~~eal~~Gv 382 (473)
++++|||+++.+.. ..+....+|++|.++.+++++++.+|+||.+||+|+++++|||||||||++||+++||
T Consensus 295 s~~~FlWv~r~~~~~~~~~~~~~~~~~~~lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~Gv 374 (470)
T PLN03015 295 SGQRFVWVLRRPASYLGASSSDDDQVSASLPEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGV 374 (470)
T ss_pred CCCcEEEEEecCccccccccccccchhhcCChHHHHhhccCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCC
Confidence 99999999974311 0001235899999999999999999999999999999999999999999999999999
Q ss_pred ceeccccccccccceeee-eecceEEEEec-CCCCCcCHHHHHHHHHHHhc--CcchHHHHHHHHHHHHHhc----cCCC
Q 036520 383 SLVVLPLIIDQPLNARLL-VDKDLAVQVER-KDDGSFTRDGIAKALRLATV--SEEGEKLRVRAREAANTFN----DKKL 454 (473)
Q Consensus 383 P~l~~P~~~DQ~~na~~v-~~~G~G~~l~~-~~~~~~t~~~l~~~i~~ll~--~~~~~~~~~~a~~~~~~~~----~~~~ 454 (473)
|||++|+++||+.||+++ +..|+|+.+.. .+++.+++++|+++|+++|. +++..++|+||+++++..+ +.|+
T Consensus 375 P~v~~P~~~DQ~~na~~~~~~~gvg~~~~~~~~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a~~Av~eGGS 454 (470)
T PLN03015 375 PIVAWPLYAEQWMNATLLTEEIGVAVRTSELPSEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSSERAWSHGGS 454 (470)
T ss_pred CEEecccccchHHHHHHHHHHhCeeEEecccccCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 999999999999999998 56699999962 11236899999999999996 3567899999999999876 4578
Q ss_pred cHHHHHHHHHHH
Q 036520 455 HDDYSVRFVEYL 466 (473)
Q Consensus 455 ~~~~~~~~~~~~ 466 (473)
+..+++.+++++
T Consensus 455 S~~nl~~~~~~~ 466 (470)
T PLN03015 455 SYNSLFEWAKRC 466 (470)
T ss_pred HHHHHHHHHHhc
Confidence 889999999875
No 16
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=2e-60 Score=472.98 Aligned_cols=441 Identities=26% Similarity=0.345 Sum_probs=321.4
Q ss_pred CCCccEEEEecCCCccChHHHHHHHHHHHhCC----CeEEEEeCCCccc----cCCCCCCC-cccCCCeEEEEecCCccc
Q 036520 1 MARKLHVVMLPWSAFGHLMPFFQLSIALAKSG----VKVSFISTPKNIQ----RLPKPAPE-SEVAALINFVEFPLPASA 71 (473)
Q Consensus 1 m~~~~~vl~~~~~~~gH~~p~l~la~~L~~~G----h~Vt~~~~~~~~~----~~~~~~~~-~~~~~~i~~~~i~~~~~~ 71 (473)
|+++ ||+++|++++||++||++||+.|+.+| +.|||++++.... .+...... .....+|++..+|.+.
T Consensus 1 ~~~~-HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~-- 77 (480)
T PLN00164 1 MAAP-TVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAVE-- 77 (480)
T ss_pred CCCC-EEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCCC--
Confidence 5554 999999999999999999999999986 7999999876432 11111000 0011258888887321
Q ss_pred cccccCCCCCCCccCCCCChhhHHHHHHHHhhhhhHHHHHHHhC--CCcEEEEcCCcchHHHHHHHcCCCeEEEecchhH
Q 036520 72 ALDDKLLLPEGAEATVDIPSENIQYLKIAYDLLQHPFKQFVAQQ--SVDWIIVDVMSHWAGKIAQEYHVPLLLFSAFSAA 149 (473)
Q Consensus 72 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~--~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~ 149 (473)
++.+.+ ....++....+.+.+.+.+++++. +++|||+|.+..|+..+|+++|||++.|+++++.
T Consensus 78 -------~p~~~e-------~~~~~~~~~~~~~~~~l~~~L~~l~~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~ 143 (480)
T PLN00164 78 -------PPTDAA-------GVEEFISRYIQLHAPHVRAAIAGLSCPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAA 143 (480)
T ss_pred -------CCCccc-------cHHHHHHHHHHhhhHHHHHHHHhcCCCceEEEECCcchhHHHHHHHhCCCEEEEECccHH
Confidence 222211 111344445556777888888765 4599999999999999999999999999999999
Q ss_pred HHHHHhchhhhhcCCCCCCCCCCccccCCCccccCCCccccccccccccccccccCCCCchhhHHHHHHhhccccEEEEc
Q 036520 150 AFQFIANPECLVGDGQKRVRPSAESLTSVPEWVDFPSSVALRTFDAIGMHHGFYGMNASGITDAHRTAEILHSCQAMAIR 229 (473)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (473)
.+..+.+........ +....+...+ -.+| +...++..+++..... .....+..+........+++++++|
T Consensus 144 ~~~~~~~~~~~~~~~----~~~~~~~~~~-~~iP--Glp~l~~~dlp~~~~~---~~~~~~~~~~~~~~~~~~~~~vlvN 213 (480)
T PLN00164 144 MLALMLRLPALDEEV----AVEFEEMEGA-VDVP--GLPPVPASSLPAPVMD---KKSPNYAWFVYHGRRFMEAAGIIVN 213 (480)
T ss_pred HHHHHhhhhhhcccc----cCcccccCcc-eecC--CCCCCChHHCCchhcC---CCcHHHHHHHHHHHhhhhcCEEEEe
Confidence 888766553211100 0000000000 0122 2222444455443211 1111122222233445678899999
Q ss_pred CCchhhhHHHHHHHhhc------CCCeEEeeccCCCCCCCCCCCCchhhhhccccCCCCCcEEEEeecCcccCCHHHHHH
Q 036520 230 SCPEFEGEYLNLLEKLT------GKPVIPVGLLTPEPNSAKGRDHQISKIFQWLDEQKPRSVVFVGFGSECKLSKDQVYE 303 (473)
Q Consensus 230 s~~~le~~~~~~~~~~~------~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~ 303 (473)
||++||+.+++.+++.. .++++.|||+......... ...++++.+||++++++++|||||||+...+.+++.+
T Consensus 214 Tf~eLE~~~~~~~~~~~~~~~~~~~~v~~vGPl~~~~~~~~~-~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~e 292 (480)
T PLN00164 214 TAAELEPGVLAAIADGRCTPGRPAPTVYPIGPVISLAFTPPA-EQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVRE 292 (480)
T ss_pred chHHhhHHHHHHHHhccccccCCCCceEEeCCCccccccCCC-ccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHH
Confidence 99999999999987642 1479999999742211100 2345679999999988899999999998899999999
Q ss_pred HHHHHhcCCCCEEEEEcCCCCC------C-CccccCchhhhhhcCCCceEEecccchHHHhhCCCcceeeeccCchhHHH
Q 036520 304 IAYGLELSGLPFLWALRKPEWA------T-DDVDALPLGFADTIRGKGIVSIGWAPQLEILAHPSIGTSLFHAGWGSVIE 376 (473)
Q Consensus 304 ~~~al~~~~~~~i~~~~~~~~~------~-~~~~~~p~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~ItHGG~~s~~e 376 (473)
++.+|+.++++|||+++..... . +....+|+++.++.+.+++++.+|+||.+||+|+++++|||||||||++|
T Consensus 293 la~gL~~s~~~flWv~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~E 372 (480)
T PLN00164 293 IAAGLERSGHRFLWVLRGPPAAGSRHPTDADLDELLPEGFLERTKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLE 372 (480)
T ss_pred HHHHHHHcCCCEEEEEcCCcccccccccccchhhhCChHHHHHhcCCCeEEeecCCHHHHhcCcccCeEEeecccchHHH
Confidence 9999999999999999854210 0 01224889999999999999999999999999999999999999999999
Q ss_pred HHhhCCceeccccccccccceeeee-ecceEEEEecCC--CCCcCHHHHHHHHHHHhcCc--chHHHHHHHHHHHHHhc-
Q 036520 377 TLQFGHSLVVLPLIIDQPLNARLLV-DKDLAVQVERKD--DGSFTRDGIAKALRLATVSE--EGEKLRVRAREAANTFN- 450 (473)
Q Consensus 377 al~~GvP~l~~P~~~DQ~~na~~v~-~~G~G~~l~~~~--~~~~t~~~l~~~i~~ll~~~--~~~~~~~~a~~~~~~~~- 450 (473)
|+++|||||++|+++||+.||++++ +.|+|+.+...+ ++.+++++|.++|+++|.++ +...+|++|+++++.++
T Consensus 373 ai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~~~~~~~~ 452 (480)
T PLN00164 373 SLWHGVPMAPWPLYAEQHLNAFELVADMGVAVAMKVDRKRDNFVEAAELERAVRSLMGGGEEEGRKAREKAAEMKAACRK 452 (480)
T ss_pred HHHcCCCEEeCCccccchhHHHHHHHHhCeEEEeccccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998875 569999986431 23579999999999999743 35789999999999876
Q ss_pred ---cCCCcHHHHHHHHHHHHHh
Q 036520 451 ---DKKLHDDYSVRFVEYLKIN 469 (473)
Q Consensus 451 ---~~~~~~~~~~~~~~~~~~~ 469 (473)
++|++..+++.++++++.+
T Consensus 453 a~~~gGSS~~~l~~~v~~~~~~ 474 (480)
T PLN00164 453 AVEEGGSSYAALQRLAREIRHG 474 (480)
T ss_pred HhcCCCcHHHHHHHHHHHHHhc
Confidence 4567889999999998764
No 17
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=2.1e-60 Score=467.24 Aligned_cols=442 Identities=22% Similarity=0.315 Sum_probs=314.3
Q ss_pred CCCccEEEEecCCCccChHHHHHHHHHHHhCC--CeEEEEeCCCccc-cCCCCCCC-cccCCCeEEEEecCCcccccccc
Q 036520 1 MARKLHVVMLPWSAFGHLMPFFQLSIALAKSG--VKVSFISTPKNIQ-RLPKPAPE-SEVAALINFVEFPLPASAALDDK 76 (473)
Q Consensus 1 m~~~~~vl~~~~~~~gH~~p~l~la~~L~~~G--h~Vt~~~~~~~~~-~~~~~~~~-~~~~~~i~~~~i~~~~~~~~~~~ 76 (473)
|.+ .||+++|++++||++|+++||+.|+.+| ..|||++++.+.. .+...... ....+++++..+|....
T Consensus 1 ~~~-~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~------ 73 (468)
T PLN02207 1 MRN-AELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPELEE------ 73 (468)
T ss_pred CCC-cEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCCCC------
Confidence 444 5999999999999999999999999998 9999999887652 11111000 01113689998882111
Q ss_pred CCCCCCCccCCCCChhhHHHHHHHHhhh----hhHHHHHHHhC----CC-cEEEEcCCcchHHHHHHHcCCCeEEEecch
Q 036520 77 LLLPEGAEATVDIPSENIQYLKIAYDLL----QHPFKQFVAQQ----SV-DWIIVDVMSHWAGKIAQEYHVPLLLFSAFS 147 (473)
Q Consensus 77 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~ll~~~----~p-D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~ 147 (473)
.+.. .. ..+....+......+ .+.+.+++++. +| +|||+|.+..|+..+|+++|||++.|++++
T Consensus 74 --~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~ 146 (468)
T PLN02207 74 --KPTL-GG----TQSVEAYVYDVIEKNIPLVRNIVMDILSSLALDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTN 146 (468)
T ss_pred --CCcc-cc----ccCHHHHHHHHHHhcchhHHHHHHHHHHHhccCCCCeEEEEECCcchHHHHHHHHhCCCEEEEECcc
Confidence 1110 01 112222333333333 44566666542 34 899999999999999999999999999999
Q ss_pred hHHHHHHhchhhhhcCCCCCCCCCCccccCCCccccCCCccccccccccccccccccCCCCchhhHHHHHHhhccccEEE
Q 036520 148 AAAFQFIANPECLVGDGQKRVRPSAESLTSVPEWVDFPSSVALRTFDAIGMHHGFYGMNASGITDAHRTAEILHSCQAMA 227 (473)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (473)
+.....+.+......... .+..... + .+-.+|.. ...++..+++.++. .. ..+....+......+.++++
T Consensus 147 a~~~~~~~~~~~~~~~~~-~~~~~~~--~-~~~~vPgl-~~~l~~~dlp~~~~---~~--~~~~~~~~~~~~~~~~~~vl 216 (468)
T PLN02207 147 SGFLAMMQYLADRHSKDT-SVFVRNS--E-EMLSIPGF-VNPVPANVLPSALF---VE--DGYDAYVKLAILFTKANGIL 216 (468)
T ss_pred HHHHHHHHHhhhcccccc-ccCcCCC--C-CeEECCCC-CCCCChHHCcchhc---CC--ccHHHHHHHHHhcccCCEEE
Confidence 988776654421110000 0000000 0 11123321 01355555554331 11 11333334444567889999
Q ss_pred EcCCchhhhHHHHHHHh-hcCCCeEEeeccCCCCCCCCC--CCCchhhhhccccCCCCCcEEEEeecCcccCCHHHHHHH
Q 036520 228 IRSCPEFEGEYLNLLEK-LTGKPVIPVGLLTPEPNSAKG--RDHQISKIFQWLDEQKPRSVVFVGFGSECKLSKDQVYEI 304 (473)
Q Consensus 228 ~~s~~~le~~~~~~~~~-~~~~~~~~vGp~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~ 304 (473)
+|||+++|+++++.++. ...++++.|||++........ ....++++.+||++++++++|||||||....+.++++++
T Consensus 217 vNtf~~LE~~~~~~~~~~~~~p~v~~VGPl~~~~~~~~~~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~el 296 (468)
T PLN02207 217 VNSSFDIEPYSVNHFLDEQNYPSVYAVGPIFDLKAQPHPEQDLARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEI 296 (468)
T ss_pred EEchHHHhHHHHHHHHhccCCCcEEEecCCcccccCCCCccccchhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHH
Confidence 99999999999888865 233679999999864321100 011235799999999888999999999999999999999
Q ss_pred HHHHhcCCCCEEEEEcCCCCCCCccccCchhhhhhcCCCceEEecccchHHHhhCCCcceeeeccCchhHHHHHhhCCce
Q 036520 305 AYGLELSGLPFLWALRKPEWATDDVDALPLGFADTIRGKGIVSIGWAPQLEILAHPSIGTSLFHAGWGSVIETLQFGHSL 384 (473)
Q Consensus 305 ~~al~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~ 384 (473)
+.+|+.++++|||+++..... ..+.+|++|+++.+.. ..+.+|+||.+||+|+++++|||||||||++||+++||||
T Consensus 297 a~~l~~~~~~flW~~r~~~~~--~~~~lp~~f~er~~~~-g~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~ 373 (468)
T PLN02207 297 AHGLELCQYRFLWSLRTEEVT--NDDLLPEGFLDRVSGR-GMICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPI 373 (468)
T ss_pred HHHHHHCCCcEEEEEeCCCcc--ccccCCHHHHhhcCCC-eEEEEeCCHHHHhcccccceeeecCccccHHHHHHcCCCE
Confidence 999999999999999853221 1346888888877644 4666999999999999999999999999999999999999
Q ss_pred eccccccccccceeeeee-cceEEEEecC----CCCCcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHhc----cCCCc
Q 036520 385 VVLPLIIDQPLNARLLVD-KDLAVQVERK----DDGSFTRDGIAKALRLATVSEEGEKLRVRAREAANTFN----DKKLH 455 (473)
Q Consensus 385 l~~P~~~DQ~~na~~v~~-~G~G~~l~~~----~~~~~t~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~ 455 (473)
|++|+++||+.||+++++ .|+|+.+... .++.+++++|.++|+++|.+ ++++||+||+++++.++ +.|++
T Consensus 374 l~~P~~~DQ~~Na~~~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~~-~~~~~r~~a~~l~~~a~~A~~~GGSS 452 (468)
T PLN02207 374 VTWPMYAEQQLNAFLMVKELKLAVELKLDYRVHSDEIVNANEIETAIRCVMNK-DNNVVRKRVMDISQMIQRATKNGGSS 452 (468)
T ss_pred EecCccccchhhHHHHHHHhCceEEEecccccccCCcccHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhcCCCcH
Confidence 999999999999998776 7999977421 11256999999999999973 37899999999999876 45777
Q ss_pred HHHHHHHHHHHHHhc
Q 036520 456 DDYSVRFVEYLKINV 470 (473)
Q Consensus 456 ~~~~~~~~~~~~~~~ 470 (473)
..+++.+++.+...+
T Consensus 453 ~~~l~~~v~~~~~~~ 467 (468)
T PLN02207 453 FAAIEKFIHDVIGIK 467 (468)
T ss_pred HHHHHHHHHHHHhcc
Confidence 889999999887543
No 18
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=4.3e-60 Score=464.16 Aligned_cols=426 Identities=24% Similarity=0.377 Sum_probs=307.2
Q ss_pred CCCccEEEEecCCCccChHHHHHHHHHHHh-CCCeEEEEeCCCc-cccCCCCCCCcccCCCeEEEEecCCccccccccCC
Q 036520 1 MARKLHVVMLPWSAFGHLMPFFQLSIALAK-SGVKVSFISTPKN-IQRLPKPAPESEVAALINFVEFPLPASAALDDKLL 78 (473)
Q Consensus 1 m~~~~~vl~~~~~~~gH~~p~l~la~~L~~-~Gh~Vt~~~~~~~-~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~ 78 (473)
|++ .||+++|++++||++|+++||+.|+. +|+.|||++++.+ ....... ....++++++.++ ++
T Consensus 1 ~~~-~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~---~~~~~~i~~~~i~----------dg 66 (455)
T PLN02152 1 MAP-PHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPN---HNNVENLSFLTFS----------DG 66 (455)
T ss_pred CCC-cEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhcc---CCCCCCEEEEEcC----------CC
Confidence 444 49999999999999999999999996 6999999998853 2211111 0111368898887 67
Q ss_pred CCCCCccCCCCChhhHHHHHHHHhhhhhHHHHHHHhC----C-CcEEEEcCCcchHHHHHHHcCCCeEEEecchhHHHHH
Q 036520 79 LPEGAEATVDIPSENIQYLKIAYDLLQHPFKQFVAQQ----S-VDWIIVDVMSHWAGKIAQEYHVPLLLFSAFSAAAFQF 153 (473)
Q Consensus 79 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~----~-pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~ 153 (473)
++.+.+... .+....+....+.+.+.+.+++++. + ++|||+|.+..|+..+|+++|||++.|++++++.+..
T Consensus 67 lp~g~~~~~---~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~ 143 (455)
T PLN02152 67 FDDGVISNT---DDVQNRLVNFERNGDKALSDFIEANLNGDSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDI 143 (455)
T ss_pred CCCcccccc---ccHHHHHHHHHHhccHHHHHHHHHhhccCCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHH
Confidence 766533211 1233345555556667777777642 3 4999999999999999999999999999999998887
Q ss_pred HhchhhhhcCCCCCCCCCCccccCCCccccCCCccccccccccccccccccCCCCchhhHHHHHHhhcc--ccEEEEcCC
Q 036520 154 IANPECLVGDGQKRVRPSAESLTSVPEWVDFPSSVALRTFDAIGMHHGFYGMNASGITDAHRTAEILHS--CQAMAIRSC 231 (473)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~s~ 231 (473)
+.+... + . . ....+| +...++..+++.++.. ............+....... .+++++|||
T Consensus 144 ~~~~~~----~------~----~-~~~~iP--glp~l~~~dlp~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf 205 (455)
T PLN02152 144 YYNYST----G------N----N-SVFEFP--NLPSLEIRDLPSFLSP-SNTNKAAQAVYQELMEFLKEESNPKILVNTF 205 (455)
T ss_pred HHHhhc----c------C----C-CeeecC--CCCCCchHHCchhhcC-CCCchhHHHHHHHHHHHhhhccCCEEEEeCh
Confidence 654420 0 0 0 011223 2222455555554311 00011112222233333322 469999999
Q ss_pred chhhhHHHHHHHhhcCCCeEEeeccCCCCC--CCC-CC----CCchhhhhccccCCCCCcEEEEeecCcccCCHHHHHHH
Q 036520 232 PEFEGEYLNLLEKLTGKPVIPVGLLTPEPN--SAK-GR----DHQISKIFQWLDEQKPRSVVFVGFGSECKLSKDQVYEI 304 (473)
Q Consensus 232 ~~le~~~~~~~~~~~~~~~~~vGp~~~~~~--~~~-~~----~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~ 304 (473)
++||+.+++.++. .+++.|||+.+... ... .. ...+.++.+||+++++++||||||||+..++.++++++
T Consensus 206 ~eLE~~~~~~l~~---~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~el 282 (455)
T PLN02152 206 DSLEPEFLTAIPN---IEMVAVGPLLPAEIFTGSESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEEL 282 (455)
T ss_pred HHhhHHHHHhhhc---CCEEEEcccCccccccccccCccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHH
Confidence 9999999998865 25999999975321 000 00 12245799999999888999999999999999999999
Q ss_pred HHHHhcCCCCEEEEEcCCCCCC-----Cc--cccCchhhhhhcCCCceEEecccchHHHhhCCCcceeeeccCchhHHHH
Q 036520 305 AYGLELSGLPFLWALRKPEWAT-----DD--VDALPLGFADTIRGKGIVSIGWAPQLEILAHPSIGTSLFHAGWGSVIET 377 (473)
Q Consensus 305 ~~al~~~~~~~i~~~~~~~~~~-----~~--~~~~p~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~ItHGG~~s~~ea 377 (473)
+.+|+.++.+|||+++...... +. ...+|++|.++.++ |.++.+|+||.+||+|+++++|||||||||++||
T Consensus 283 a~gL~~s~~~flWv~r~~~~~~~~~~~~~~~~~~~~~~f~e~~~~-~g~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea 361 (455)
T PLN02152 283 ARALIEGKRPFLWVITDKLNREAKIEGEEETEIEKIAGFRHELEE-VGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLES 361 (455)
T ss_pred HHHHHHcCCCeEEEEecCcccccccccccccccccchhHHHhccC-CeEEEeeCCHHHHhCCcccceEEeeCCcccHHHH
Confidence 9999999999999998532110 00 11246777777654 4566799999999999999999999999999999
Q ss_pred HhhCCceeccccccccccceeeeeec-ceEEEEecCCCCCcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHhc----cC
Q 036520 378 LQFGHSLVVLPLIIDQPLNARLLVDK-DLAVQVERKDDGSFTRDGIAKALRLATVSEEGEKLRVRAREAANTFN----DK 452 (473)
Q Consensus 378 l~~GvP~l~~P~~~DQ~~na~~v~~~-G~G~~l~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~----~~ 452 (473)
+++|||||++|+++||+.||+++++. |+|+.+....++.+++++|+++|+++|++ ++.+||+||+++++.++ ..
T Consensus 362 ~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~e~l~~av~~vm~~-~~~~~r~~a~~~~~~~~~a~~~g 440 (455)
T PLN02152 362 LVLGVPVVAFPMWSDQPANAKLLEEIWKTGVRVRENSEGLVERGEIRRCLEAVMEE-KSVELRESAEKWKRLAIEAGGEG 440 (455)
T ss_pred HHcCCCEEeccccccchHHHHHHHHHhCceEEeecCcCCcCcHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999984 66666643322357999999999999972 24569999988888765 45
Q ss_pred CCcHHHHHHHHHHH
Q 036520 453 KLHDDYSVRFVEYL 466 (473)
Q Consensus 453 ~~~~~~~~~~~~~~ 466 (473)
+++..+++.+++++
T Consensus 441 gsS~~nl~~li~~i 454 (455)
T PLN02152 441 GSSDKNVEAFVKTL 454 (455)
T ss_pred CcHHHHHHHHHHHh
Confidence 77788999999876
No 19
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.1e-59 Score=469.45 Aligned_cols=438 Identities=25% Similarity=0.379 Sum_probs=312.8
Q ss_pred ccEEEEecCCCccChHHHHHHHHHHHhCC--CeEEEEeCCCccccCC--CC-CC--CcccCCCeEEEEecCCcccccccc
Q 036520 4 KLHVVMLPWSAFGHLMPFFQLSIALAKSG--VKVSFISTPKNIQRLP--KP-AP--ESEVAALINFVEFPLPASAALDDK 76 (473)
Q Consensus 4 ~~~vl~~~~~~~gH~~p~l~la~~L~~~G--h~Vt~~~~~~~~~~~~--~~-~~--~~~~~~~i~~~~i~~~~~~~~~~~ 76 (473)
|+||+++|++++||++||++||+.|+.+| ..|||++++.+..... .. .. .....++|+++.+|.
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~--------- 72 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISA--------- 72 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCC---------
Confidence 67999999999999999999999999998 8899999887654221 00 00 001123699998873
Q ss_pred CCCCCCCccCCCCChhhHHHHHHHHhhhhhHHHHHHHh-----CCC-cEEEEcCCcchHHHHHHHcCCCeEEEecchhHH
Q 036520 77 LLLPEGAEATVDIPSENIQYLKIAYDLLQHPFKQFVAQ-----QSV-DWIIVDVMSHWAGKIAQEYHVPLLLFSAFSAAA 150 (473)
Q Consensus 77 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~-----~~p-D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~ 150 (473)
+.+.... .. .+...+......+.+.+.+++.+ .+| +|||+|.+..|+..+|+++|||++.|++++++.
T Consensus 73 -~~~~~~~----~~-~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~ 146 (481)
T PLN02554 73 -GDQPTTE----DP-TFQSYIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATF 146 (481)
T ss_pred -CCCCccc----ch-HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHH
Confidence 3221110 11 23333333444455556666543 134 899999999999999999999999999999999
Q ss_pred HHHHhchhhhhcCCCCCCCCCCccccCC--CccccCCCccccccccccccccccccCCCCchhhHHHHHHhhccccEEEE
Q 036520 151 FQFIANPECLVGDGQKRVRPSAESLTSV--PEWVDFPSSVALRTFDAIGMHHGFYGMNASGITDAHRTAEILHSCQAMAI 228 (473)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (473)
+..+.+...+...+..+++ +.+.. +-.+|... ..++..+++..... ...+....+......+.+++++
T Consensus 147 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~iPgl~-~pl~~~dlp~~~~~-----~~~~~~~~~~~~~~~~~~gvlv 216 (481)
T PLN02554 147 LGLQLHVQMLYDEKKYDVS----ELEDSEVELDVPSLT-RPYPVKCLPSVLLS-----KEWLPLFLAQARRFREMKGILV 216 (481)
T ss_pred HHHHHhhhhhccccccCcc----ccCCCCceeECCCCC-CCCCHHHCCCcccC-----HHHHHHHHHHHHhcccCCEEEE
Confidence 8887665422211000000 00000 01122210 12444444432210 1112333344455677899999
Q ss_pred cCCchhhhHHHHHHHhh--cCCCeEEeeccC-CCCCCCCCCCCchhhhhccccCCCCCcEEEEeecCcccCCHHHHHHHH
Q 036520 229 RSCPEFEGEYLNLLEKL--TGKPVIPVGLLT-PEPNSAKGRDHQISKIFQWLDEQKPRSVVFVGFGSECKLSKDQVYEIA 305 (473)
Q Consensus 229 ~s~~~le~~~~~~~~~~--~~~~~~~vGp~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~ 305 (473)
|++.++|+.+...+.+. ..++++.|||+. ............++++.+||++++++++|||||||+...+.+++++++
T Consensus 217 Nt~~eLe~~~~~~l~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la 296 (481)
T PLN02554 217 NTVAELEPQALKFFSGSSGDLPPVYPVGPVLHLENSGDDSKDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIA 296 (481)
T ss_pred echHHHhHHHHHHHHhcccCCCCEEEeCCCccccccccccccccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHH
Confidence 99999999988888753 235799999994 332211000123467999999998888999999999889999999999
Q ss_pred HHHhcCCCCEEEEEcCCCCC---------CCccccCchhhhhhcCCCceEEecccchHHHhhCCCcceeeeccCchhHHH
Q 036520 306 YGLELSGLPFLWALRKPEWA---------TDDVDALPLGFADTIRGKGIVSIGWAPQLEILAHPSIGTSLFHAGWGSVIE 376 (473)
Q Consensus 306 ~al~~~~~~~i~~~~~~~~~---------~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~ItHGG~~s~~e 376 (473)
.+|+.++++|||+++..... .+....+|++|+++.++ |.++.+|+||.+||+|+++++|||||||||++|
T Consensus 297 ~~l~~~~~~flW~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r~~~-~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~E 375 (481)
T PLN02554 297 IALERSGHRFLWSLRRASPNIMKEPPGEFTNLEEILPEGFLDRTKD-IGKVIGWAPQVAVLAKPAIGGFVTHCGWNSILE 375 (481)
T ss_pred HHHHHcCCCeEEEEcCCcccccccccccccchhhhCChHHHHHhcc-CceEEeeCCHHHHhCCcccCcccccCccchHHH
Confidence 99999999999999853210 00112368888887654 556679999999999999999999999999999
Q ss_pred HHhhCCceeccccccccccce-eeeeecceEEEEecC--------CCCCcCHHHHHHHHHHHhcCcchHHHHHHHHHHHH
Q 036520 377 TLQFGHSLVVLPLIIDQPLNA-RLLVDKDLAVQVERK--------DDGSFTRDGIAKALRLATVSEEGEKLRVRAREAAN 447 (473)
Q Consensus 377 al~~GvP~l~~P~~~DQ~~na-~~v~~~G~G~~l~~~--------~~~~~t~~~l~~~i~~ll~~~~~~~~~~~a~~~~~ 447 (473)
|+++|||||++|+++||+.|| ++++++|+|+.++.. +++.+++++|.++|+++|.+ +++||+||+++++
T Consensus 376 a~~~GVP~l~~P~~~DQ~~Na~~~v~~~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~--~~~~r~~a~~l~~ 453 (481)
T PLN02554 376 SLWFGVPMAAWPLYAEQKFNAFEMVEELGLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQ--DSDVRKRVKEMSE 453 (481)
T ss_pred HHHcCCCEEecCccccchhhHHHHHHHhCceEEeeccccccccccccCeEcHHHHHHHHHHHhcC--CHHHHHHHHHHHH
Confidence 999999999999999999999 557888999999741 12368999999999999963 5899999999999
Q ss_pred Hhc----cCCCcHHHHHHHHHHHHHh
Q 036520 448 TFN----DKKLHDDYSVRFVEYLKIN 469 (473)
Q Consensus 448 ~~~----~~~~~~~~~~~~~~~~~~~ 469 (473)
.++ +.|++..+++.++++++.+
T Consensus 454 ~~~~av~~gGss~~~l~~lv~~~~~~ 479 (481)
T PLN02554 454 KCHVALMDGGSSHTALKKFIQDVTKN 479 (481)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHHhh
Confidence 877 3567788999999998875
No 20
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.1e-58 Score=460.91 Aligned_cols=432 Identities=25% Similarity=0.407 Sum_probs=313.6
Q ss_pred CCccEEEEecCCCccChHHHHHHHHHHHhC--CCeEEEEeCCCccccCCCCCCCcccCCCeEEEEecCCccccccccCCC
Q 036520 2 ARKLHVVMLPWSAFGHLMPFFQLSIALAKS--GVKVSFISTPKNIQRLPKPAPESEVAALINFVEFPLPASAALDDKLLL 79 (473)
Q Consensus 2 ~~~~~vl~~~~~~~gH~~p~l~la~~L~~~--Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~l 79 (473)
..+.||+++|++++||++|+++||++|+.+ ||+|||++++.+...+..... ..+++++.+| +++
T Consensus 8 ~~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~~----~~gi~fv~lp----------~~~ 73 (459)
T PLN02448 8 TTSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDPK----PDNIRFATIP----------NVI 73 (459)
T ss_pred CCCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccCC----CCCEEEEECC----------CCC
Confidence 356899999999999999999999999999 999999999988776655321 2479999887 444
Q ss_pred CCCCccCCCCChhhHHHHHHHHhhhhhHHHHHHHhC--CCcEEEEcCCcchHHHHHHHcCCCeEEEecchhHHHHHHhch
Q 036520 80 PEGAEATVDIPSENIQYLKIAYDLLQHPFKQFVAQQ--SVDWIIVDVMSHWAGKIAQEYHVPLLLFSAFSAAAFQFIANP 157 (473)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~--~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~ 157 (473)
+.+.... .+...++....+.+.+.+.+++++. ++||||+|.++.|+..+|+++|||++.++++++..+..+.+.
T Consensus 74 p~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~ 149 (459)
T PLN02448 74 PSELVRA----ADFPGFLEAVMTKMEAPFEQLLDRLEPPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHF 149 (459)
T ss_pred CCccccc----cCHHHHHHHHHHHhHHHHHHHHHhcCCCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHh
Confidence 4332211 1223344444445666777777763 679999999999999999999999999999999776665444
Q ss_pred hhhhcCCCCCCCCCCccccCCCccccCCCccccccccccccccccccCCCCchhhHHHHHHhhccccEEEEcCCchhhhH
Q 036520 158 ECLVGDGQKRVRPSAESLTSVPEWVDFPSSVALRTFDAIGMHHGFYGMNASGITDAHRTAEILHSCQAMAIRSCPEFEGE 237 (473)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~ 237 (473)
..+...+..+.... .....+..++|.. ..++..+++.++. ......+...........+.+.+++|||++||+.
T Consensus 150 ~~~~~~~~~~~~~~-~~~~~~~~~iPg~--~~l~~~dlp~~~~---~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~ 223 (459)
T PLN02448 150 DLLPQNGHFPVELS-ESGEERVDYIPGL--SSTRLSDLPPIFH---GNSRRVLKRILEAFSWVPKAQYLLFTSFYELEAQ 223 (459)
T ss_pred hhhhhccCCCCccc-cccCCccccCCCC--CCCChHHCchhhc---CCchHHHHHHHHHHhhcccCCEEEEccHHHhhHH
Confidence 32221111000000 0000011123321 1234444443321 1111112223333334456789999999999999
Q ss_pred HHHHHHhhcCCCeEEeeccCCCCCCC--CC---CCCchhhhhccccCCCCCcEEEEeecCcccCCHHHHHHHHHHHhcCC
Q 036520 238 YLNLLEKLTGKPVIPVGLLTPEPNSA--KG---RDHQISKIFQWLDEQKPRSVVFVGFGSECKLSKDQVYEIAYGLELSG 312 (473)
Q Consensus 238 ~~~~~~~~~~~~~~~vGp~~~~~~~~--~~---~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~ 312 (473)
+++++++.++.+++.|||+.+..... .. ....+.++.+|++.++++++|||||||+...+.+++++++.+|+..+
T Consensus 224 ~~~~l~~~~~~~~~~iGP~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~ 303 (459)
T PLN02448 224 AIDALKSKFPFPVYPIGPSIPYMELKDNSSSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSG 303 (459)
T ss_pred HHHHHHhhcCCceEEecCcccccccCCCccccccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCC
Confidence 99999887766899999997532110 00 01122478999999988899999999998888999999999999999
Q ss_pred CCEEEEEcCCCCCCCccccCchhhhhhcCCCceEEecccchHHHhhCCCcceeeeccCchhHHHHHhhCCceeccccccc
Q 036520 313 LPFLWALRKPEWATDDVDALPLGFADTIRGKGIVSIGWAPQLEILAHPSIGTSLFHAGWGSVIETLQFGHSLVVLPLIID 392 (473)
Q Consensus 313 ~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P~~~D 392 (473)
++|||+++... .++.++. .+|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++|
T Consensus 304 ~~~lw~~~~~~----------~~~~~~~-~~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~D 372 (459)
T PLN02448 304 VRFLWVARGEA----------SRLKEIC-GDMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWD 372 (459)
T ss_pred CCEEEEEcCch----------hhHhHhc-cCCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEecccccc
Confidence 99999886431 1222222 237788899999999999999999999999999999999999999999999
Q ss_pred cccceeeeeec-ceEEEEecC--CCCCcCHHHHHHHHHHHhcC--cchHHHHHHHHHHHHHhc----cCCCcHHHHHHHH
Q 036520 393 QPLNARLLVDK-DLAVQVERK--DDGSFTRDGIAKALRLATVS--EEGEKLRVRAREAANTFN----DKKLHDDYSVRFV 463 (473)
Q Consensus 393 Q~~na~~v~~~-G~G~~l~~~--~~~~~t~~~l~~~i~~ll~~--~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~ 463 (473)
|+.||+++++. |+|+.+... +++.+++++|+++|+++|.+ ++..+||+||+++++.++ ++|++.++++.++
T Consensus 373 Q~~na~~v~~~~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a~~~gGss~~~l~~~v 452 (459)
T PLN02448 373 QPLNSKLIVEDWKIGWRVKREVGEETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGAIAKGGSSDTNLDAFI 452 (459)
T ss_pred chhhHHHHHHHhCceEEEecccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 99999999984 888888632 12368999999999999973 345689999999999875 5677899999999
Q ss_pred HHHHH
Q 036520 464 EYLKI 468 (473)
Q Consensus 464 ~~~~~ 468 (473)
++++.
T Consensus 453 ~~~~~ 457 (459)
T PLN02448 453 RDISQ 457 (459)
T ss_pred HHHhc
Confidence 98864
No 21
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.8e-57 Score=452.97 Aligned_cols=445 Identities=24% Similarity=0.328 Sum_probs=303.2
Q ss_pred CccEEEEecCCCccChHHHHHHHHHHHhCCC---eEEEEeCCCccc-cCCCCCCC-cccCCCeEEEEecCCccccccccC
Q 036520 3 RKLHVVMLPWSAFGHLMPFFQLSIALAKSGV---KVSFISTPKNIQ-RLPKPAPE-SEVAALINFVEFPLPASAALDDKL 77 (473)
Q Consensus 3 ~~~~vl~~~~~~~gH~~p~l~la~~L~~~Gh---~Vt~~~~~~~~~-~~~~~~~~-~~~~~~i~~~~i~~~~~~~~~~~~ 77 (473)
++.||+++|++++||++||++||+.|+.+|. .||++.+..... ........ ....++|++..+|++.
T Consensus 2 ~~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~-------- 73 (475)
T PLN02167 2 KEAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSLIASEPRIRLVTLPEVQ-------- 73 (475)
T ss_pred CccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhcccCCCCeEEEECCCCC--------
Confidence 3459999999999999999999999999983 567666543221 01000000 0112369999988421
Q ss_pred CCCCCCccCCCCC-hhhHHHHHHHHhhhhhHHHHHHHh-----C-CCcEEEEcCCcchHHHHHHHcCCCeEEEecchhHH
Q 036520 78 LLPEGAEATVDIP-SENIQYLKIAYDLLQHPFKQFVAQ-----Q-SVDWIIVDVMSHWAGKIAQEYHVPLLLFSAFSAAA 150 (473)
Q Consensus 78 ~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~ll~~-----~-~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~ 150 (473)
+ +.+.+...... ..+...+......+.+.+.+++.+ . +++|||+|.+..|+..+|+++|||++.|++++++.
T Consensus 74 ~-p~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~ 152 (475)
T PLN02167 74 D-PPPMELFVKASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGF 152 (475)
T ss_pred C-CccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHH
Confidence 1 11111001111 122222222222233334444332 1 34999999999999999999999999999999988
Q ss_pred HHHHhchhhhhcCCCCCCCCCCccccCCCccccCCCccccccccccccccccccCCCCchhhHHHHHHhhccccEEEEcC
Q 036520 151 FQFIANPECLVGDGQKRVRPSAESLTSVPEWVDFPSSVALRTFDAIGMHHGFYGMNASGITDAHRTAEILHSCQAMAIRS 230 (473)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 230 (473)
+..+.+..... +............ .+..+|+.. ..++..+++.... .. ..+...........+.+++++||
T Consensus 153 ~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~iPgl~-~~l~~~dlp~~~~---~~--~~~~~~~~~~~~~~~a~~vlvNT 223 (475)
T PLN02167 153 LGMMKYLPERH--RKTASEFDLSSGE-EELPIPGFV-NSVPTKVLPPGLF---MK--ESYEAWVEIAERFPEAKGILVNS 223 (475)
T ss_pred HHHHHHHHHhc--cccccccccCCCC-CeeECCCCC-CCCChhhCchhhh---Cc--chHHHHHHHHHhhcccCEeeecc
Confidence 77665432111 0000000000000 001122110 1133334433221 00 11222333344567788999999
Q ss_pred CchhhhHHHHHHHhhc--CCCeEEeeccCCCCCCC-CCC-CCchhhhhccccCCCCCcEEEEeecCcccCCHHHHHHHHH
Q 036520 231 CPEFEGEYLNLLEKLT--GKPVIPVGLLTPEPNSA-KGR-DHQISKIFQWLDEQKPRSVVFVGFGSECKLSKDQVYEIAY 306 (473)
Q Consensus 231 ~~~le~~~~~~~~~~~--~~~~~~vGp~~~~~~~~-~~~-~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~ 306 (473)
|++||+++++++++.. -+++++|||+....... ... ....+++.+||+.++++++|||||||+...+.+++.+++.
T Consensus 224 f~eLE~~~~~~l~~~~~~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela~ 303 (475)
T PLN02167 224 FTELEPNAFDYFSRLPENYPPVYPVGPILSLKDRTSPNLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIAQ 303 (475)
T ss_pred HHHHHHHHHHHHHhhcccCCeeEEeccccccccccCCCCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHH
Confidence 9999999999886641 15799999998643211 000 1123579999999988899999999998899999999999
Q ss_pred HHhcCCCCEEEEEcCCCCC-CCccccCchhhhhhcCCCceEEecccchHHHhhCCCcceeeeccCchhHHHHHhhCCcee
Q 036520 307 GLELSGLPFLWALRKPEWA-TDDVDALPLGFADTIRGKGIVSIGWAPQLEILAHPSIGTSLFHAGWGSVIETLQFGHSLV 385 (473)
Q Consensus 307 al~~~~~~~i~~~~~~~~~-~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l 385 (473)
+|+.++++|||+++..... .+....+|++|+++.++++ ++.+|+||.+||+|+++++|||||||||++||+++|||||
T Consensus 304 ~l~~~~~~flw~~~~~~~~~~~~~~~lp~~~~er~~~rg-~v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l 382 (475)
T PLN02167 304 ALELVGCRFLWSIRTNPAEYASPYEPLPEGFMDRVMGRG-LVCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVPIA 382 (475)
T ss_pred HHHhCCCcEEEEEecCcccccchhhhCChHHHHHhccCe-eeeccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCCCEE
Confidence 9999999999999854211 0112358889988887665 5559999999999999999999999999999999999999
Q ss_pred ccccccccccceee-eeecceEEEEecC---C-CCCcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHhc----cCCCcH
Q 036520 386 VLPLIIDQPLNARL-LVDKDLAVQVERK---D-DGSFTRDGIAKALRLATVSEEGEKLRVRAREAANTFN----DKKLHD 456 (473)
Q Consensus 386 ~~P~~~DQ~~na~~-v~~~G~G~~l~~~---~-~~~~t~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~ 456 (473)
++|+++||+.||++ +++.|+|+.+... + ++.+++++|+++|+++|.+ +++||+||+++++.++ ++|++.
T Consensus 383 ~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~--~~~~r~~a~~~~~~~~~av~~gGsS~ 460 (475)
T PLN02167 383 TWPMYAEQQLNAFTMVKELGLAVELRLDYVSAYGEIVKADEIAGAVRSLMDG--EDVPRKKVKEIAEAARKAVMDGGSSF 460 (475)
T ss_pred eccccccchhhHHHHHHHhCeeEEeecccccccCCcccHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHhCCCcHH
Confidence 99999999999976 6778999998642 1 1357999999999999984 2489999999998865 567788
Q ss_pred HHHHHHHHHHHH
Q 036520 457 DYSVRFVEYLKI 468 (473)
Q Consensus 457 ~~~~~~~~~~~~ 468 (473)
.+++.+++++..
T Consensus 461 ~~l~~~v~~i~~ 472 (475)
T PLN02167 461 VAVKRFIDDLLG 472 (475)
T ss_pred HHHHHHHHHHHh
Confidence 999999998864
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=1.1e-51 Score=413.12 Aligned_cols=411 Identities=15% Similarity=0.173 Sum_probs=290.7
Q ss_pred EEEEe-cCCCccChHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCcccCCCeEEEEecCCccccccccCCCCC-CC
Q 036520 6 HVVML-PWSAFGHLMPFFQLSIALAKSGVKVSFISTPKNIQRLPKPAPESEVAALINFVEFPLPASAALDDKLLLPE-GA 83 (473)
Q Consensus 6 ~vl~~-~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~l~~-~~ 83 (473)
||+++ |.++.||+.-+.+++++|++|||+||++++..... .... ...+++.+.++..... +. +.+.. ..
T Consensus 22 kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~~-~~~~-----~~~~~~~i~~~~~~~~-~~--~~~~~~~~ 92 (507)
T PHA03392 22 RILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRVY-YASH-----LCGNITEIDASLSVEY-FK--KLVKSSAV 92 (507)
T ss_pred cEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEecccccc-cccC-----CCCCEEEEEcCCChHH-HH--HHHhhhhH
Confidence 58755 88899999999999999999999999997643111 1110 1135665555321110 00 00000 00
Q ss_pred -ccCCC--CChh----hHHHHHHHHhh--hhhHHHHHHH--hCCCcEEEEcCCcchHHHHHHHc-CCCeEEEecchhHHH
Q 036520 84 -EATVD--IPSE----NIQYLKIAYDL--LQHPFKQFVA--QQSVDWIIVDVMSHWAGKIAQEY-HVPLLLFSAFSAAAF 151 (473)
Q Consensus 84 -~~~~~--~~~~----~~~~~~~~~~~--~~~~l~~ll~--~~~pD~vI~D~~~~~~~~~A~~l-giP~v~~~~~~~~~~ 151 (473)
+.... .... ....+...++. ..+.+.++|+ +.++|+||+|.+..|+..+|+++ ++|.|.+++......
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~~~~ 172 (507)
T PHA03392 93 FRKRGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIANKNNKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYGLAE 172 (507)
T ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCCCceeEEEecccchhHHHHHHHhCCCCEEEEcCCCCchh
Confidence 00000 0000 01111222322 2556788887 77899999999889999999999 999988877554322
Q ss_pred HHHhchhhhhcCCCCCCCCCCccccCCCccccCCC-----cc--ccccccccccc------cccccC---C-CCchhh-H
Q 036520 152 QFIANPECLVGDGQKRVRPSAESLTSVPEWVDFPS-----SV--ALRTFDAIGMH------HGFYGM---N-ASGITD-A 213 (473)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-----~~--~~~~~~~~~~~------~~~~~~---~-~~~~~~-~ 213 (473)
.... ..+.+.+++|+|... .+ ..|..+..... ...... . ...+.. .
T Consensus 173 ~~~~----------------~gg~p~~~syvP~~~~~~~~~Msf~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~ 236 (507)
T PHA03392 173 NFET----------------MGAVSRHPVYYPNLWRSKFGNLNVWETINEIYTELRLYNEFSLLADEQNKLLKQQFGPDT 236 (507)
T ss_pred HHHh----------------hccCCCCCeeeCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCC
Confidence 1110 011355788888432 12 22433321100 000000 0 001111 1
Q ss_pred HHHHHhhccccEEEEcCCchhhhHHHHHHHhhcCCCeEEeeccCCCCCCCCCCCCchhhhhccccCCCCCcEEEEeecCc
Q 036520 214 HRTAEILHSCQAMAIRSCPEFEGEYLNLLEKLTGKPVIPVGLLTPEPNSAKGRDHQISKIFQWLDEQKPRSVVFVGFGSE 293 (473)
Q Consensus 214 ~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~ 293 (473)
..+.+...+.+.+++|+.+.++.+ +.+++++++|||++.+.... ...++++.+|++..+ +++|||||||+
T Consensus 237 ~~~~~l~~~~~l~lvns~~~~d~~------rp~~p~v~~vGgi~~~~~~~---~~l~~~l~~fl~~~~-~g~V~vS~GS~ 306 (507)
T PHA03392 237 PTIRELRNRVQLLFVNVHPVFDNN------RPVPPSVQYLGGLHLHKKPP---QPLDDYLEEFLNNST-NGVVYVSFGSS 306 (507)
T ss_pred CCHHHHHhCCcEEEEecCccccCC------CCCCCCeeeecccccCCCCC---CCCCHHHHHHHhcCC-CcEEEEECCCC
Confidence 234566778899999999999964 57789999999998754222 345778999998765 46999999998
Q ss_pred cc---CCHHHHHHHHHHHhcCCCCEEEEEcCCCCCCCccccCchhhhhhcCCCceEEecccchHHHhhCCCcceeeeccC
Q 036520 294 CK---LSKDQVYEIAYGLELSGLPFLWALRKPEWATDDVDALPLGFADTIRGKGIVSIGWAPQLEILAHPSIGTSLFHAG 370 (473)
Q Consensus 294 ~~---~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~ItHGG 370 (473)
.. .+.+.++.+++++++.+.+|||++++... ...+|+ |+++.+|+||.+||+|+++++||||||
T Consensus 307 ~~~~~~~~~~~~~~l~a~~~l~~~viw~~~~~~~----~~~~p~---------Nv~i~~w~Pq~~lL~hp~v~~fItHGG 373 (507)
T PHA03392 307 IDTNDMDNEFLQMLLRTFKKLPYNVLWKYDGEVE----AINLPA---------NVLTQKWFPQRAVLKHKNVKAFVTQGG 373 (507)
T ss_pred CcCCCCCHHHHHHHHHHHHhCCCeEEEEECCCcC----cccCCC---------ceEEecCCCHHHHhcCCCCCEEEecCC
Confidence 64 46788999999999999999999875321 123555 999999999999999999999999999
Q ss_pred chhHHHHHhhCCceeccccccccccceeeeeecceEEEEecCCCCCcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHhc
Q 036520 371 WGSVIETLQFGHSLVVLPLIIDQPLNARLLVDKDLAVQVERKDDGSFTRDGIAKALRLATVSEEGEKLRVRAREAANTFN 450 (473)
Q Consensus 371 ~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~ 450 (473)
+||++||+++|||+|++|+++||+.||+|++++|+|+.+++. .+|.++|.++|+++++ |++||+||+++++.++
T Consensus 374 ~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv~~~G~G~~l~~~---~~t~~~l~~ai~~vl~---~~~y~~~a~~ls~~~~ 447 (507)
T PHA03392 374 VQSTDEAIDALVPMVGLPMMGDQFYNTNKYVELGIGRALDTV---TVSAAQLVLAIVDVIE---NPKYRKNLKELRHLIR 447 (507)
T ss_pred cccHHHHHHcCCCEEECCCCccHHHHHHHHHHcCcEEEeccC---CcCHHHHHHHHHHHhC---CHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999987 8999999999999999 8999999999999999
Q ss_pred cCCC-cHHHHHHHHHHHHHhc
Q 036520 451 DKKL-HDDYSVRFVEYLKINV 470 (473)
Q Consensus 451 ~~~~-~~~~~~~~~~~~~~~~ 470 (473)
+.+. ..+.+..++|++..++
T Consensus 448 ~~p~~~~~~av~~iE~v~r~~ 468 (507)
T PHA03392 448 HQPMTPLHKAIWYTEHVIRNK 468 (507)
T ss_pred hCCCCHHHHHHHHHHHHHhCC
Confidence 8874 4456668888887765
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=1.1e-53 Score=435.50 Aligned_cols=407 Identities=21% Similarity=0.328 Sum_probs=240.5
Q ss_pred EEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCcccCCCeEEEEecCCccccccccCCCCCCCcc
Q 036520 6 HVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPKNIQRLPKPAPESEVAALINFVEFPLPASAALDDKLLLPEGAEA 85 (473)
Q Consensus 6 ~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~l~~~~~~ 85 (473)
|||++|. ++||+.++..++++|++|||+||++++.... .... ....++++..++.+... +........
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 69 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPSPSS-SLNP-----SKPSNIRFETYPDPYPE-----EEFEEIFPE 69 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH-TTSEEEHHHHHH-T-----------S-CCEEEE-----T-----T------TT
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEeeccc-cccc-----ccccceeeEEEcCCcch-----HHHhhhhHH
Confidence 5888885 8899999999999999999999999875432 2221 11235666666632220 111111100
Q ss_pred C-----CC-CC-hhhHHHHHH---HHhhh---------hhHHHHHHHhCCCcEEEEcCCcchHHHHHHHcCCCeEEEecc
Q 036520 86 T-----VD-IP-SENIQYLKI---AYDLL---------QHPFKQFVAQQSVDWIIVDVMSHWAGKIAQEYHVPLLLFSAF 146 (473)
Q Consensus 86 ~-----~~-~~-~~~~~~~~~---~~~~~---------~~~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~ 146 (473)
. .+ .. ......+.. ..... .+.+.+.+++.++|++|+|.+..|+..+|+.+++|.+.+.++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~~~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~ 149 (500)
T PF00201_consen 70 FISKFFSESSFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKSEKFDLVISDAFDPCGLALAHYLGIPVIIISSS 149 (500)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHHHHHCT-EEEEEESSHHHHHHHHHHTHHHHHHC
T ss_pred HHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccccceEeeccchhHHHHHHhcCCeEEEecc
Confidence 0 00 00 011111111 11111 233444556678999999999999999999999999865443
Q ss_pred hhHHHHHHhchhhhhcCCCCCCCCCCccccCCCccccCCC-----cc--ccccccccc------cccccccC---CC-Cc
Q 036520 147 SAAAFQFIANPECLVGDGQKRVRPSAESLTSVPEWVDFPS-----SV--ALRTFDAIG------MHHGFYGM---NA-SG 209 (473)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-----~~--~~~~~~~~~------~~~~~~~~---~~-~~ 209 (473)
..... ......+.+.+++|+|... .+ ..|..+... +....... .. ..
T Consensus 150 ~~~~~----------------~~~~~~g~p~~psyvP~~~s~~~~~msf~~Ri~N~l~~~~~~~~~~~~~~~~~~~~~~~ 213 (500)
T PF00201_consen 150 TPMYD----------------LSSFSGGVPSPPSYVPSMFSDFSDRMSFWQRIKNFLFYLYFRFIFRYFFSPQDKLYKKY 213 (500)
T ss_dssp CSCSC----------------CTCCTSCCCTSTTSTTCBCCCSGTTSSSST--TTSHHHHHHHHHHHHGGGS-TTS-EEE
T ss_pred cccch----------------hhhhccCCCCChHHhccccccCCCccchhhhhhhhhhhhhhccccccchhhHHHHHhhh
Confidence 22110 0112225567778877432 12 223333210 00001111 10 01
Q ss_pred hhhHHHHHHhhccccEEEEcCCchhhhHHHHHHHhhcCCCeEEeeccCCCCCCCCCCCCchhhhhccccCCCCCcEEEEe
Q 036520 210 ITDAHRTAEILHSCQAMAIRSCPEFEGEYLNLLEKLTGKPVIPVGLLTPEPNSAKGRDHQISKIFQWLDEQKPRSVVFVG 289 (473)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs 289 (473)
........+.+.+...+++|+.+.++.| ++ +.|++++||+++.+... +.++++.+|++...++++||||
T Consensus 214 ~~~~~~~~~~~~~~~l~l~ns~~~ld~p-----rp-~~p~v~~vGgl~~~~~~-----~l~~~~~~~~~~~~~~~vv~vs 282 (500)
T PF00201_consen 214 FGFPFSFRELLSNASLVLINSHPSLDFP-----RP-LLPNVVEVGGLHIKPAK-----PLPEELWNFLDSSGKKGVVYVS 282 (500)
T ss_dssp SS-GGGCHHHHHHHHHCCSSTEEE---------HH-HHCTSTTGCGC-S---------TCHHHHHHHTSTTTTTEEEEEE
T ss_pred cccccccHHHHHHHHHHhhhccccCcCC-----cc-hhhcccccCcccccccc-----ccccccchhhhccCCCCEEEEe
Confidence 1111233455566778888998888743 44 44689999999876543 3567899999985667899999
Q ss_pred ecCcccCC-HHHHHHHHHHHhcCCCCEEEEEcCCCCCCCccccCchhhhhhcCCCceEEecccchHHHhhCCCcceeeec
Q 036520 290 FGSECKLS-KDQVYEIAYGLELSGLPFLWALRKPEWATDDVDALPLGFADTIRGKGIVSIGWAPQLEILAHPSIGTSLFH 368 (473)
Q Consensus 290 ~Gs~~~~~-~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~ItH 368 (473)
|||..... .+.++.+++++++.+++|||++++. ....+|+ |+++.+|+||.+||+|+++++||||
T Consensus 283 fGs~~~~~~~~~~~~~~~~~~~~~~~~iW~~~~~-----~~~~l~~---------n~~~~~W~PQ~~lL~hp~v~~fitH 348 (500)
T PF00201_consen 283 FGSIVSSMPEEKLKEIAEAFENLPQRFIWKYEGE-----PPENLPK---------NVLIVKWLPQNDLLAHPRVKLFITH 348 (500)
T ss_dssp -TSSSTT-HHHHHHHHHHHHHCSTTEEEEEETCS-----HGCHHHT---------TEEEESS--HHHHHTSTTEEEEEES
T ss_pred cCcccchhHHHHHHHHHHHHhhCCCccccccccc-----ccccccc---------eEEEeccccchhhhhcccceeeeec
Confidence 99998644 4458889999999999999999863 2344565 9999999999999999999999999
Q ss_pred cCchhHHHHHhhCCceeccccccccccceeeeeecceEEEEecCCCCCcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHH
Q 036520 369 AGWGSVIETLQFGHSLVVLPLIIDQPLNARLLVDKDLAVQVERKDDGSFTRDGIAKALRLATVSEEGEKLRVRAREAANT 448 (473)
Q Consensus 369 GG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~ 448 (473)
||+||++||+++|||||++|+++||+.||++++++|+|+.++.. .+|.++|.++|+++|+ |++|++||+++++.
T Consensus 349 gG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~~~~G~g~~l~~~---~~~~~~l~~ai~~vl~---~~~y~~~a~~ls~~ 422 (500)
T PF00201_consen 349 GGLNSTQEALYHGVPMLGIPLFGDQPRNAARVEEKGVGVVLDKN---DLTEEELRAAIREVLE---NPSYKENAKRLSSL 422 (500)
T ss_dssp --HHHHHHHHHCT--EEE-GCSTTHHHHHHHHHHTTSEEEEGGG---C-SHHHHHHHHHHHHH---SHHHHHHHHHHHHT
T ss_pred cccchhhhhhhccCCccCCCCcccCCccceEEEEEeeEEEEEec---CCcHHHHHHHHHHHHh---hhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998 8999999999999999 89999999999999
Q ss_pred hccCCCcH-HHHHHHHHHHHHhcc
Q 036520 449 FNDKKLHD-DYSVRFVEYLKINVA 471 (473)
Q Consensus 449 ~~~~~~~~-~~~~~~~~~~~~~~~ 471 (473)
+++.+.+. +.+..|+|++.++.+
T Consensus 423 ~~~~p~~p~~~~~~~ie~v~~~~~ 446 (500)
T PF00201_consen 423 FRDRPISPLERAVWWIEYVARHGG 446 (500)
T ss_dssp TT----------------------
T ss_pred HhcCCCCHHHHHHHHHHHHHhcCC
Confidence 99887654 566888888877654
No 24
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=5.1e-45 Score=360.24 Aligned_cols=387 Identities=17% Similarity=0.170 Sum_probs=261.5
Q ss_pred ecCCCccChHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCcccCCCeEEEEecCCccccccccCCCCCCCccCCCC
Q 036520 10 LPWSAFGHLMPFFQLSIALAKSGVKVSFISTPKNIQRLPKPAPESEVAALINFVEFPLPASAALDDKLLLPEGAEATVDI 89 (473)
Q Consensus 10 ~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~l~~~~~~~~~~ 89 (473)
+.+|++||++|+++||++|+++||+|+|++++.+.+.++.. ++.+..++..... .+.... .....
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~--------G~~~~~~~~~~~~-----~~~~~~--~~~~~ 65 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEAA--------GAEFVLYGSALPP-----PDNPPE--NTEEE 65 (392)
T ss_pred CCCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHHc--------CCEEEecCCcCcc-----cccccc--ccCcc
Confidence 35789999999999999999999999999999999888774 7788877632110 001100 00011
Q ss_pred ChhhHHHHHHHHhhhhhHHHHHHHhCCCcEEEEcCCcchHHHHHHHcCCCeEEEecchhHHHHHHhchhhhhcCCCCCCC
Q 036520 90 PSENIQYLKIAYDLLQHPFKQFVAQQSVDWIIVDVMSHWAGKIAQEYHVPLLLFSAFSAAAFQFIANPECLVGDGQKRVR 169 (473)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (473)
.......+........+.+.+++++.+||+||+|.+++++..+|+.+|||+|.+++....... .+.
T Consensus 66 ~~~~~~~~~~~~~~~~~~l~~~~~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~---~~~----------- 131 (392)
T TIGR01426 66 PIDIIEKLLDEAEDVLPQLEEAYKGDRPDLIVYDIASWTGRLLARKWDVPVISSFPTFAANEE---FEE----------- 131 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCccHHHHHHHHHhCCCEEEEehhhccccc---ccc-----------
Confidence 112222222333334455667778889999999998889999999999999988654321100 000
Q ss_pred CCCccccCCCccccCC-Ccccccccccccccc---ccccCCCCchhhHHHHHHhhccccEEEEcCCchhhhHHHHHHHhh
Q 036520 170 PSAESLTSVPEWVDFP-SSVALRTFDAIGMHH---GFYGMNASGITDAHRTAEILHSCQAMAIRSCPEFEGEYLNLLEKL 245 (473)
Q Consensus 170 ~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~ 245 (473)
. .+++.+.. ............+.. ....+..-.......+. .......+..+.+.|++ .++.
T Consensus 132 ~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~gl~~~~~~~~~--~~~~~~~l~~~~~~l~~-----~~~~ 197 (392)
T TIGR01426 132 M-------VSPAGEGSAEEGAIAERGLAEYVARLSALLEEHGITTPPVEFLA--APRRDLNLVYTPKAFQP-----AGET 197 (392)
T ss_pred c-------ccccchhhhhhhccccchhHHHHHHHHHHHHHhCCCCCCHHHHh--cCCcCcEEEeCChHhCC-----Cccc
Confidence 0 00000000 000000000000000 00000000000001110 11222234444444443 3456
Q ss_pred cCCCeEEeeccCCCCCCCCCCCCchhhhhccccCCCCCcEEEEeecCcccCCHHHHHHHHHHHhcCCCCEEEEEcCCCCC
Q 036520 246 TGKPVIPVGLLTPEPNSAKGRDHQISKIFQWLDEQKPRSVVFVGFGSECKLSKDQVYEIAYGLELSGLPFLWALRKPEWA 325 (473)
Q Consensus 246 ~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~ 325 (473)
++++++++||+...... ...|....+.+++|||||||+.......++.+++++.+.+.+++|..+.....
T Consensus 198 ~~~~~~~~Gp~~~~~~~----------~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~~~ 267 (392)
T TIGR01426 198 FDDSFTFVGPCIGDRKE----------DGSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGVDP 267 (392)
T ss_pred cCCCeEEECCCCCCccc----------cCCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCCCh
Confidence 78899999998754321 22366655667899999999876666788889999999999999988654211
Q ss_pred CCccccCchhhhhhcCCCceEEecccchHHHhhCCCcceeeeccCchhHHHHHhhCCceeccccccccccceeeeeecce
Q 036520 326 TDDVDALPLGFADTIRGKGIVSIGWAPQLEILAHPSIGTSLFHAGWGSVIETLQFGHSLVVLPLIIDQPLNARLLVDKDL 405 (473)
Q Consensus 326 ~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~ 405 (473)
+....++ +|+.+.+|+||.++|+++++ ||||||+||++||+++|+|+|++|...||+.||++++++|+
T Consensus 268 -~~~~~~~---------~~v~~~~~~p~~~ll~~~~~--~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~~g~ 335 (392)
T TIGR01426 268 -ADLGELP---------PNVEVRQWVPQLEILKKADA--FITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRIAELGL 335 (392)
T ss_pred -hHhccCC---------CCeEEeCCCCHHHHHhhCCE--EEECCCchHHHHHHHhCCCEEecCCcccHHHHHHHHHHCCC
Confidence 0111233 48999999999999999988 99999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHH
Q 036520 406 AVQVERKDDGSFTRDGIAKALRLATVSEEGEKLRVRAREAANTFNDKKLHDDYSVRFVEYLK 467 (473)
Q Consensus 406 G~~l~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (473)
|+.+... .++.++|.++|+++|+ +++|+++++++++.+...++...+++.+++.+.
T Consensus 336 g~~l~~~---~~~~~~l~~ai~~~l~---~~~~~~~~~~l~~~~~~~~~~~~aa~~i~~~~~ 391 (392)
T TIGR01426 336 GRHLPPE---EVTAEKLREAVLAVLS---DPRYAERLRKMRAEIREAGGARRAADEIEGFLA 391 (392)
T ss_pred EEEeccc---cCCHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhc
Confidence 9999876 7899999999999999 899999999999999988888888877776543
No 25
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=2.4e-44 Score=357.15 Aligned_cols=383 Identities=16% Similarity=0.144 Sum_probs=251.5
Q ss_pred cEEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCcccCCCeEEEEecCCccccccccCCCCCCCc
Q 036520 5 LHVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPKNIQRLPKPAPESEVAALINFVEFPLPASAALDDKLLLPEGAE 84 (473)
Q Consensus 5 ~~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~l~~~~~ 84 (473)
|||+|++.|+.||++|+++||++|+++||+|+|++++.+...++.. +++++.++..... ........
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~~~--------G~~~~~~~~~~~~-----~~~~~~~~ 67 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEAA--------GLEFVPVGGDPDE-----LLASPERN 67 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHHHc--------CCceeeCCCCHHH-----HHhhhhhc
Confidence 7999999999999999999999999999999999999887777663 7888877621110 00000000
Q ss_pred cC--CCCCh---hhHHHHHHHHhhhhhHHHHHHHhCCCcEEEEcCCcchHHHHHHHcCCCeEEEecchhHHHHHHhchhh
Q 036520 85 AT--VDIPS---ENIQYLKIAYDLLQHPFKQFVAQQSVDWIIVDVMSHWAGKIAQEYHVPLLLFSAFSAAAFQFIANPEC 159 (473)
Q Consensus 85 ~~--~~~~~---~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~ 159 (473)
.. ..... .....+........+.+.+.+++++||+||+|.+.+++..+|+++|||++.+++++.......
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~----- 142 (401)
T cd03784 68 AGLLLLGPGLLLGALRLLRREAEAMLDDLVAAARDWGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTSAF----- 142 (401)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCccccC-----
Confidence 00 00011 112223333444455566666778999999999888999999999999999988654321100
Q ss_pred hhcCCCCCCCCCCccccCCCccccCCCccccccccccccccccccCCCCchhhHHHHHHhhc---------cccEEEEcC
Q 036520 160 LVGDGQKRVRPSAESLTSVPEWVDFPSSVALRTFDAIGMHHGFYGMNASGITDAHRTAEILH---------SCQAMAIRS 230 (473)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~s 230 (473)
++.. +......+.......+... ...........+. .....+...
T Consensus 143 ------------------~~~~-~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~ 196 (401)
T cd03784 143 ------------------PPPL-GRANLRLYALLEAELWQDL-------LGAWLRARRRRLGLPPLSLLDGSDVPELYGF 196 (401)
T ss_pred ------------------CCcc-chHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhcCCCCCcccccCCCcEEEec
Confidence 0000 0000000000000000000 0000000000000 011111111
Q ss_pred CchhhhHHHHHHHhhcCCCeEEee-ccCCCCCCCCCCCCchhhhhccccCCCCCcEEEEeecCcccCC-HHHHHHHHHHH
Q 036520 231 CPEFEGEYLNLLEKLTGKPVIPVG-LLTPEPNSAKGRDHQISKIFQWLDEQKPRSVVFVGFGSECKLS-KDQVYEIAYGL 308 (473)
Q Consensus 231 ~~~le~~~~~~~~~~~~~~~~~vG-p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~-~~~~~~~~~al 308 (473)
.+.+. ..++.++++..++| ++...+.. ...+.++..|++.. +++|||+|||+.... ......+++++
T Consensus 197 ~~~~~-----~~~~~~~~~~~~~g~~~~~~~~~----~~~~~~~~~~~~~~--~~~v~v~~Gs~~~~~~~~~~~~~~~a~ 265 (401)
T cd03784 197 SPAVL-----PPPPDWPRFDLVTGYGFRDVPYN----GPPPPELWLFLAAG--RPPVYVGFGSMVVRDPEALARLDVEAV 265 (401)
T ss_pred CcccC-----CCCCCccccCcEeCCCCCCCCCC----CCCCHHHHHHHhCC--CCcEEEeCCCCcccCHHHHHHHHHHHH
Confidence 11111 12345566677775 33322221 22345677888764 459999999998744 45677799999
Q ss_pred hcCCCCEEEEEcCCCCCCCccccCchhhhhhcCCCceEEecccchHHHhhCCCcceeeeccCchhHHHHHhhCCceeccc
Q 036520 309 ELSGLPFLWALRKPEWATDDVDALPLGFADTIRGKGIVSIGWAPQLEILAHPSIGTSLFHAGWGSVIETLQFGHSLVVLP 388 (473)
Q Consensus 309 ~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P 388 (473)
...+.++||+++..... ....| +|+++.+|+||.++|.++++ ||||||+||++||+++|||+|++|
T Consensus 266 ~~~~~~~i~~~g~~~~~---~~~~~---------~~v~~~~~~p~~~ll~~~d~--~I~hgG~~t~~eal~~GvP~v~~P 331 (401)
T cd03784 266 ATLGQRAILSLGWGGLG---AEDLP---------DNVRVVDFVPHDWLLPRCAA--VVHHGGAGTTAAALRAGVPQLVVP 331 (401)
T ss_pred HHcCCeEEEEccCcccc---ccCCC---------CceEEeCCCCHHHHhhhhhe--eeecCCchhHHHHHHcCCCEEeeC
Confidence 98999999998764321 11233 49999999999999999888 999999999999999999999999
Q ss_pred cccccccceeeeeecceEEEEecCCCCCcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHhccCCCcHHHHHHHH
Q 036520 389 LIIDQPLNARLLVDKDLAVQVERKDDGSFTRDGIAKALRLATVSEEGEKLRVRAREAANTFNDKKLHDDYSVRFV 463 (473)
Q Consensus 389 ~~~DQ~~na~~v~~~G~G~~l~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 463 (473)
...||+.||++++++|+|+.++.. .++.++|.++|+++++ ++ ++++++++++.+++.++...+++.+.
T Consensus 332 ~~~dQ~~~a~~~~~~G~g~~l~~~---~~~~~~l~~al~~~l~---~~-~~~~~~~~~~~~~~~~g~~~~~~~ie 399 (401)
T cd03784 332 FFGDQPFWAARVAELGAGPALDPR---ELTAERLAAALRRLLD---PP-SRRRAAALLRRIREEDGVPSAADVIE 399 (401)
T ss_pred CCCCcHHHHHHHHHCCCCCCCCcc---cCCHHHHHHHHHHHhC---HH-HHHHHHHHHHHHHhccCHHHHHHHHh
Confidence 999999999999999999999886 7899999999999999 54 66677777777777777777666554
No 26
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=1.4e-42 Score=353.90 Aligned_cols=420 Identities=26% Similarity=0.392 Sum_probs=266.5
Q ss_pred ccEEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCcccCCCeEEEEecCCccccccccCCCCCCC
Q 036520 4 KLHVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPKNIQRLPKPAPESEVAALINFVEFPLPASAALDDKLLLPEGA 83 (473)
Q Consensus 4 ~~~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~l~~~~ 83 (473)
+.|+++++++++||++|++.+|++|+++||+||++++.......... . .......+...........++++...
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKS-S-----KSKSIKKINPPPFEFLTIPDGLPEGW 78 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCc-c-----cceeeeeeecChHHhhhhhhhhccch
Confidence 45788899999999999999999999999999999987655443321 1 01111111100000000001222111
Q ss_pred ccCCCCChhhHHHHHHHHhh-hhhHHHHHH--HhCCCcEEEEcCCcchHHHHHHHcC-CCeEEEecchhHHHHHHhchhh
Q 036520 84 EATVDIPSENIQYLKIAYDL-LQHPFKQFV--AQQSVDWIIVDVMSHWAGKIAQEYH-VPLLLFSAFSAAAFQFIANPEC 159 (473)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~-~~~~l~~ll--~~~~pD~vI~D~~~~~~~~~A~~lg-iP~v~~~~~~~~~~~~~~~~~~ 159 (473)
.............+...+.. ......... ...++|++|+|.+..+...+|.... |+..++++.+..........
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~-- 156 (496)
T KOG1192|consen 79 EDDDLDISESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLPS-- 156 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCcC--
Confidence 11000000001122222222 222222222 2234999999998666666776664 88888877776654432211
Q ss_pred hhcCCCCCCCCCCccccCCCccccCCC--------cccccccccc-----ccccc---------ccc-CCCCchhhHHHH
Q 036520 160 LVGDGQKRVRPSAESLTSVPEWVDFPS--------SVALRTFDAI-----GMHHG---------FYG-MNASGITDAHRT 216 (473)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~p~~~--------~~~~~~~~~~-----~~~~~---------~~~-~~~~~~~~~~~~ 216 (473)
+.+++|... .+..+..++. .+... ... ............
T Consensus 157 ------------------~~~~~p~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (496)
T KOG1192|consen 157 ------------------PLSYVPSPFSLSSGDDMSFPERVPNLIKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTA 218 (496)
T ss_pred ------------------cccccCcccCccccccCcHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccH
Confidence 112222211 1111111110 00000 000 000000000122
Q ss_pred HHhhccccEEEEcCCchhhhHHHHHHHhhcCCCeEEeeccCCCCCCCCCCCCchhhhhccccCCCCC--cEEEEeecCcc
Q 036520 217 AEILHSCQAMAIRSCPEFEGEYLNLLEKLTGKPVIPVGLLTPEPNSAKGRDHQISKIFQWLDEQKPR--SVVFVGFGSEC 294 (473)
Q Consensus 217 ~~~~~~~~~~~~~s~~~le~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~V~vs~Gs~~ 294 (473)
.....+....++|+...++.. .....+++++|||++...... .. ....+|++..+.. ++|||||||+.
T Consensus 219 ~~i~~~~~~~~ln~~~~~~~~-----~~~~~~~v~~IG~l~~~~~~~---~~--~~~~~wl~~~~~~~~~vvyvSfGS~~ 288 (496)
T KOG1192|consen 219 SGIIVNASFIFLNSNPLLDFE-----PRPLLPKVIPIGPLHVKDSKQ---KS--PLPLEWLDILDESRHSVVYISFGSMV 288 (496)
T ss_pred HHhhhcCeEEEEccCcccCCC-----CCCCCCCceEECcEEecCccc---cc--cccHHHHHHHhhccCCeEEEECCccc
Confidence 244455556666666554431 122457899999999874332 11 1244555544443 79999999999
Q ss_pred ---cCCHHHHHHHHHHHhcC-CCCEEEEEcCCCCCCCccccCchhhhhhcCCCceEEecccchHHH-hhCCCcceeeecc
Q 036520 295 ---KLSKDQVYEIAYGLELS-GLPFLWALRKPEWATDDVDALPLGFADTIRGKGIVSIGWAPQLEI-LAHPSIGTSLFHA 369 (473)
Q Consensus 295 ---~~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~l-l~~~~~~~~ItHG 369 (473)
.++.++...++.++++. +++|+|+++..... .+++++.++ ..+|+...+|+||.++ |.|+++++|||||
T Consensus 289 ~~~~lp~~~~~~l~~~l~~~~~~~FiW~~~~~~~~-----~~~~~~~~~-~~~nV~~~~W~PQ~~lll~H~~v~~FvTHg 362 (496)
T KOG1192|consen 289 NSADLPEEQKKELAKALESLQGVTFLWKYRPDDSI-----YFPEGLPNR-GRGNVVLSKWAPQNDLLLDHPAVGGFVTHG 362 (496)
T ss_pred ccccCCHHHHHHHHHHHHhCCCceEEEEecCCcch-----hhhhcCCCC-CcCceEEecCCCcHHHhcCCCcCcEEEECC
Confidence 68999999999999999 88999999875321 123333222 3458888899999998 5999999999999
Q ss_pred CchhHHHHHhhCCceeccccccccccceeeeeecceEEEEecCCCCCcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHh
Q 036520 370 GWGSVIETLQFGHSLVVLPLIIDQPLNARLLVDKDLAVQVERKDDGSFTRDGIAKALRLATVSEEGEKLRVRAREAANTF 449 (473)
Q Consensus 370 G~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~ 449 (473)
|||||+|++++|||||++|+++||+.||+++++.|.|..+.+. .++.+++..++.++++ +++|+++++++++.+
T Consensus 363 G~nSt~E~~~~GvP~v~~Plf~DQ~~Na~~i~~~g~~~v~~~~---~~~~~~~~~~~~~il~---~~~y~~~~~~l~~~~ 436 (496)
T KOG1192|consen 363 GWNSTLESIYSGVPMVCVPLFGDQPLNARLLVRHGGGGVLDKR---DLVSEELLEAIKEILE---NEEYKEAAKRLSEIL 436 (496)
T ss_pred cccHHHHHHhcCCceecCCccccchhHHHHHHhCCCEEEEehh---hcCcHHHHHHHHHHHc---ChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999888888887 6776669999999999 899999999999999
Q ss_pred ccCCCcHHHHHHHHHHHHHhcc
Q 036520 450 NDKKLHDDYSVRFVEYLKINVA 471 (473)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~ 471 (473)
++++...+.+..+++++..+.+
T Consensus 437 ~~~p~~~~~~~~~~e~~~~~~~ 458 (496)
T KOG1192|consen 437 RDQPISPELAVKWVEFVARHGG 458 (496)
T ss_pred HcCCCCHHHHHHHHHHHHhcCC
Confidence 9998888777778888776543
No 27
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=6.5e-43 Score=340.82 Aligned_cols=402 Identities=17% Similarity=0.187 Sum_probs=259.7
Q ss_pred ccEEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCcccCCCeEEEEecCCccccccccCCCCCCC
Q 036520 4 KLHVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPKNIQRLPKPAPESEVAALINFVEFPLPASAALDDKLLLPEGA 83 (473)
Q Consensus 4 ~~~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~l~~~~ 83 (473)
+|||+++..|++||++|++.|+++|.++||+|+|+|++.+.+.+++. ++.|..++.... .....
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~a--------g~~f~~~~~~~~--------~~~~~ 64 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEAA--------GLAFVAYPIRDS--------ELATE 64 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHHHh--------CcceeeccccCC--------hhhhh
Confidence 58999999999999999999999999999999999999999999886 566777763211 00000
Q ss_pred ccCCCCChhhHHHHHHHHhhhhhHHHHHHHhCCCcEEEEcCCcchHHHHHHHcCCCeEEEecchhHHHHHHhchhhhhcC
Q 036520 84 EATVDIPSENIQYLKIAYDLLQHPFKQFVAQQSVDWIIVDVMSHWAGKIAQEYHVPLLLFSAFSAAAFQFIANPECLVGD 163 (473)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~ 163 (473)
.........+.. ..........++.+++.+..||+++.|.....+ .+++..++|++...............+.
T Consensus 65 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 137 (406)
T COG1819 65 DGKFAGVKSFRR-LLQQFKKLIRELLELLRELEPDLVVDDARLSLG-LAARLLGIPVVGINVAPYTPLPAAGLPL----- 137 (406)
T ss_pred hhhhhccchhHH-HhhhhhhhhHHHHHHHHhcchhhhhcchhhhhh-hhhhhcccchhhhhhhhccCCcccccCc-----
Confidence 011111111111 222333345566678888999999999655444 8899999998876554333211111110
Q ss_pred CCCCCCCCCccccCCCccccCCCccccccccccccccccccCCCCchh-hHHHHHHhhccccEEEEcCCchhhhHHHHHH
Q 036520 164 GQKRVRPSAESLTSVPEWVDFPSSVALRTFDAIGMHHGFYGMNASGIT-DAHRTAEILHSCQAMAIRSCPEFEGEYLNLL 242 (473)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~ 242 (473)
+.....+..+.+..-++.......... ..++.....+....+. ...+....+.......+...+...++
T Consensus 138 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 207 (406)
T COG1819 138 ---PPVGIAGKLPIPLYPLPPRLVRPLIFA--RSWLPKLVVRRNLGLELGLPNIRRLFASGPLLEIAYTDVLFPP----- 207 (406)
T ss_pred ---ccccccccccccccccChhhccccccc--hhhhhhhhhhhhccccccccchHHHhcCCCCccccccccccCC-----
Confidence 000000111111110110000000000 0000000000000000 00001111111111111111100000
Q ss_pred HhhcCCCeEEeeccCCCCCCCCCCCCchhhhhccccCCCCCcEEEEeecCcccCCHHHHHHHHHHHhcCCCCEEEEEcCC
Q 036520 243 EKLTGKPVIPVGLLTPEPNSAKGRDHQISKIFQWLDEQKPRSVVFVGFGSECKLSKDQVYEIAYGLELSGLPFLWALRKP 322 (473)
Q Consensus 243 ~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~ 322 (473)
...+|....++||+...... ++..|.. ..+++||+|+||.... .+.+..+.+++...+.++|+....
T Consensus 208 ~~~~p~~~~~~~~~~~~~~~---------~~~~~~~--~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi~~~~~- 274 (406)
T COG1819 208 GDRLPFIGPYIGPLLGEAAN---------ELPYWIP--ADRPIVYVSLGTVGNA-VELLAIVLEALADLDVRVIVSLGG- 274 (406)
T ss_pred CCCCCCCcCccccccccccc---------cCcchhc--CCCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEEEeccc-
Confidence 02234446667777654332 3444432 2355999999999976 888889999999999999999876
Q ss_pred CCCCCccccCchhhhhhcCCCceEEecccchHHHhhCCCcceeeeccCchhHHHHHhhCCceeccccccccccceeeeee
Q 036520 323 EWATDDVDALPLGFADTIRGKGIVSIGWAPQLEILAHPSIGTSLFHAGWGSVIETLQFGHSLVVLPLIIDQPLNARLLVD 402 (473)
Q Consensus 323 ~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~ 402 (473)
.+. ...++|+ |+.+..|+||.++|+++++ ||||||+|||+|||++|||+|++|...||+.||.|+++
T Consensus 275 ~~~--~~~~~p~---------n~~v~~~~p~~~~l~~ad~--vI~hGG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~ 341 (406)
T COG1819 275 ARD--TLVNVPD---------NVIVADYVPQLELLPRADA--VIHHGGAGTTSEALYAGVPLVVIPDGADQPLNAERVEE 341 (406)
T ss_pred ccc--ccccCCC---------ceEEecCCCHHHHhhhcCE--EEecCCcchHHHHHHcCCCEEEecCCcchhHHHHHHHH
Confidence 221 2456676 9999999999999999999 99999999999999999999999999999999999999
Q ss_pred cceEEEEecCCCCCcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHhc
Q 036520 403 KDLAVQVERKDDGSFTRDGIAKALRLATVSEEGEKLRVRAREAANTFNDKKLHDDYSVRFVEYLKINV 470 (473)
Q Consensus 403 ~G~G~~l~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (473)
+|+|+.+... .++.+.|+++|.++|+ ++.|+++++++++.++..++.+++++.+.+...+..
T Consensus 342 ~G~G~~l~~~---~l~~~~l~~av~~vL~---~~~~~~~~~~~~~~~~~~~g~~~~a~~le~~~~~~~ 403 (406)
T COG1819 342 LGAGIALPFE---ELTEERLRAAVNEVLA---DDSYRRAAERLAEEFKEEDGPAKAADLLEEFAREKK 403 (406)
T ss_pred cCCceecCcc---cCCHHHHHHHHHHHhc---CHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHhccc
Confidence 9999999997 8999999999999999 899999999999999999987667676666665543
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.95 E-value=2.9e-25 Score=214.16 Aligned_cols=320 Identities=17% Similarity=0.118 Sum_probs=200.7
Q ss_pred EEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCcccCCCeEEEEecCCccccccccCCCCCCCcc
Q 036520 6 HVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPKNIQRLPKPAPESEVAALINFVEFPLPASAALDDKLLLPEGAEA 85 (473)
Q Consensus 6 ~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~l~~~~~~ 85 (473)
+|++.+.++.||++|.+++|++|.++||+|+|+++....+.-.- ...++.+..++. .++...
T Consensus 3 ~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~l~------~~~g~~~~~~~~---------~~l~~~--- 64 (352)
T PRK12446 3 KIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKTII------EKENIPYYSISS---------GKLRRY--- 64 (352)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCccccccC------cccCCcEEEEec---------cCcCCC---
Confidence 58999999999999999999999999999999997664432110 012577776652 122110
Q ss_pred CCCCChhhHHHHHHHHhhhhhHHHHHHHhCCCcEEEEcCCc--chHHHHHHHcCCCeEEEecchhHHHHHHhchhhhhcC
Q 036520 86 TVDIPSENIQYLKIAYDLLQHPFKQFVAQQSVDWIIVDVMS--HWAGKIAQEYHVPLLLFSAFSAAAFQFIANPECLVGD 163 (473)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~--~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~ 163 (473)
............... .-....++++.+||+||+.... ..+..+|+.+++|++......
T Consensus 65 ---~~~~~~~~~~~~~~~-~~~~~~i~~~~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n~---------------- 124 (352)
T PRK12446 65 ---FDLKNIKDPFLVMKG-VMDAYVRIRKLKPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESDM---------------- 124 (352)
T ss_pred ---chHHHHHHHHHHHHH-HHHHHHHHHhcCCCEEEecCchhhHHHHHHHHHcCCCEEEECCCC----------------
Confidence 011111122222222 2233467899999999998633 346789999999998753210
Q ss_pred CCCCCCCCCccccCCCccccCCCccccccccccccccccccCCCCchhhHHHHHHhhccccEEEEcCCchhhhHHHHHHH
Q 036520 164 GQKRVRPSAESLTSVPEWVDFPSSVALRTFDAIGMHHGFYGMNASGITDAHRTAEILHSCQAMAIRSCPEFEGEYLNLLE 243 (473)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~ 243 (473)
++ ....++. .+..+.+ +-+|++. .
T Consensus 125 ------------------~~---------------------------g~~nr~~--~~~a~~v-~~~f~~~--------~ 148 (352)
T PRK12446 125 ------------------TP---------------------------GLANKIA--LRFASKI-FVTFEEA--------A 148 (352)
T ss_pred ------------------Cc---------------------------cHHHHHH--HHhhCEE-EEEccch--------h
Confidence 00 0011111 1122222 2234321 1
Q ss_pred hhcC-CCeEEeec-cCCCCCCCCCCCCchhhhhccccCCCCCcEEEEeecCcccCCH-HHHHHHHHHHhcCCCCEEEEEc
Q 036520 244 KLTG-KPVIPVGL-LTPEPNSAKGRDHQISKIFQWLDEQKPRSVVFVGFGSECKLSK-DQVYEIAYGLELSGLPFLWALR 320 (473)
Q Consensus 244 ~~~~-~~~~~vGp-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~-~~~~~~~~al~~~~~~~i~~~~ 320 (473)
..++ .+++++|+ +..+.... ..++..+.+.-.+.+++|+|..||.+.... +.+..++..+. .+.+++|+++
T Consensus 149 ~~~~~~k~~~tG~Pvr~~~~~~-----~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~-~~~~vv~~~G 222 (352)
T PRK12446 149 KHLPKEKVIYTGSPVREEVLKG-----NREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELL-LKYQIVHLCG 222 (352)
T ss_pred hhCCCCCeEEECCcCCcccccc-----cchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhc-cCcEEEEEeC
Confidence 2223 46888995 43332211 111222223323346699999999986333 33344444443 2478888887
Q ss_pred CCCCCCCccccCchhhhhhcCCCceEEeccc-c-hHHHhhCCCcceeeeccCchhHHHHHhhCCceeccccc-----ccc
Q 036520 321 KPEWATDDVDALPLGFADTIRGKGIVSIGWA-P-QLEILAHPSIGTSLFHAGWGSVIETLQFGHSLVVLPLI-----IDQ 393 (473)
Q Consensus 321 ~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~-p-q~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P~~-----~DQ 393 (473)
..... .... . .+++.+.+|+ + -.++++++++ +|||||.+|+.|++++|+|+|++|+. .||
T Consensus 223 ~~~~~--------~~~~-~--~~~~~~~~f~~~~m~~~~~~adl--vIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q 289 (352)
T PRK12446 223 KGNLD--------DSLQ-N--KEGYRQFEYVHGELPDILAITDF--VISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQ 289 (352)
T ss_pred CchHH--------HHHh-h--cCCcEEecchhhhHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEEcCCCCCCCchH
Confidence 54211 0000 0 1255666887 4 3788999998 99999999999999999999999984 489
Q ss_pred ccceeeeeecceEEEEecCCCCCcCHHHHHHHHHHHhcCcchH-HHHHHHHH
Q 036520 394 PLNARLLVDKDLAVQVERKDDGSFTRDGIAKALRLATVSEEGE-KLRVRARE 444 (473)
Q Consensus 394 ~~na~~v~~~G~G~~l~~~~~~~~t~~~l~~~i~~ll~~~~~~-~~~~~a~~ 444 (473)
..||+.++++|+|..+... .++++.|.++|.++++ |+ .+++++++
T Consensus 290 ~~Na~~l~~~g~~~~l~~~---~~~~~~l~~~l~~ll~---~~~~~~~~~~~ 335 (352)
T PRK12446 290 ILNAESFERQGYASVLYEE---DVTVNSLIKHVEELSH---NNEKYKTALKK 335 (352)
T ss_pred HHHHHHHHHCCCEEEcchh---cCCHHHHHHHHHHHHc---CHHHHHHHHHH
Confidence 9999999999999999876 8999999999999998 54 45544433
No 29
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.95 E-value=4.8e-26 Score=218.81 Aligned_cols=307 Identities=17% Similarity=0.146 Sum_probs=193.4
Q ss_pred cEEEEecCC-CccChHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCcccCCCeEEEEecCCccccccccCCCCCCC
Q 036520 5 LHVVMLPWS-AFGHLMPFFQLSIALAKSGVKVSFISTPKNIQRLPKPAPESEVAALINFVEFPLPASAALDDKLLLPEGA 83 (473)
Q Consensus 5 ~~vl~~~~~-~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~l~~~~ 83 (473)
|||+|...+ +.||+.+++.||++| +||+|+|++.....+.+.. .+.+..++-. .+.. .
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~---------~~~~~~~~~~---------~~~~-~ 59 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLKP---------RFPVREIPGL---------GPIQ-E 59 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhcc---------ccCEEEccCc---------eEec-c
Confidence 789987766 779999999999999 6999999998766544433 2334444310 0011 1
Q ss_pred ccCCCCChhhHHHH--HHHHhhhhhHHHHHHHhCCCcEEEEcCCcchHHHHHHHcCCCeEEEecchhHHHHHHhchhhhh
Q 036520 84 EATVDIPSENIQYL--KIAYDLLQHPFKQFVAQQSVDWIIVDVMSHWAGKIAQEYHVPLLLFSAFSAAAFQFIANPECLV 161 (473)
Q Consensus 84 ~~~~~~~~~~~~~~--~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 161 (473)
....+......... ........+.+.+++++.+||+||+|. .+.+..+|+..|||++.+........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~pDlVIsD~-~~~~~~aa~~~giP~i~i~~~~~~~~---------- 128 (318)
T PF13528_consen 60 NGRLDRWKTVRNNIRWLARLARRIRREIRWLREFRPDLVISDF-YPLAALAARRAGIPVIVISNQYWFLH---------- 128 (318)
T ss_pred CCccchHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEcC-hHHHHHHHHhcCCCEEEEEehHHccc----------
Confidence 11111111111111 112233455566788889999999994 55677899999999999877543210
Q ss_pred cCCCCCCCCCCccccCCCccccCCCccccccccccccccccccCCCCchhhHHHHHH-h-hccccEEEEcCCchhhhHHH
Q 036520 162 GDGQKRVRPSAESLTSVPEWVDFPSSVALRTFDAIGMHHGFYGMNASGITDAHRTAE-I-LHSCQAMAIRSCPEFEGEYL 239 (473)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~s~~~le~~~~ 239 (473)
+..+.+. . ........+... . .......+.-++. ..
T Consensus 129 ----------------~~~~~~~--------------------~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~---- 166 (318)
T PF13528_consen 129 ----------------PNFWLPW--------------------D-QDFGRLIERYIDRYHFPPADRRLALSFY-PP---- 166 (318)
T ss_pred ----------------ccCCcch--------------------h-hhHHHHHHHhhhhccCCcccceecCCcc-cc----
Confidence 0000000 0 000011111111 1 2233333333332 11
Q ss_pred HHHHhhcCCCeEEeeccCCCCCCCCCCCCchhhhhccccCCCCCcEEEEeecCcccCCHHHHHHHHHHHhcCC-CCEEEE
Q 036520 240 NLLEKLTGKPVIPVGLLTPEPNSAKGRDHQISKIFQWLDEQKPRSVVFVGFGSECKLSKDQVYEIAYGLELSG-LPFLWA 318 (473)
Q Consensus 240 ~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~-~~~i~~ 318 (473)
.....+..++||+..+.... ... .+++.|+|+||..... .+.++++..+ .+|++.
T Consensus 167 ----~~~~~~~~~~~p~~~~~~~~------------~~~--~~~~~iLv~~gg~~~~------~~~~~l~~~~~~~~~v~ 222 (318)
T PF13528_consen 167 ----LPPFFRVPFVGPIIRPEIRE------------LPP--EDEPKILVYFGGGGPG------DLIEALKALPDYQFIVF 222 (318)
T ss_pred ----ccccccccccCchhcccccc------------cCC--CCCCEEEEEeCCCcHH------HHHHHHHhCCCCeEEEE
Confidence 01112366788876543221 011 1234899999987632 5566666655 666666
Q ss_pred EcCCCCCCCccccCchhhhhhcCCCceEEeccc--chHHHhhCCCcceeeeccCchhHHHHHhhCCceecccc--ccccc
Q 036520 319 LRKPEWATDDVDALPLGFADTIRGKGIVSIGWA--PQLEILAHPSIGTSLFHAGWGSVIETLQFGHSLVVLPL--IIDQP 394 (473)
Q Consensus 319 ~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~--pq~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P~--~~DQ~ 394 (473)
+... . +. ..+|+.+.+|. ...++|..|++ +|||||+||++|++++|+|+|++|. +.||.
T Consensus 223 -g~~~-~----~~---------~~~ni~~~~~~~~~~~~~m~~ad~--vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~ 285 (318)
T PF13528_consen 223 -GPNA-A----DP---------RPGNIHVRPFSTPDFAELMAAADL--VISKGGYTTISEALALGKPALVIPRPGQDEQE 285 (318)
T ss_pred -cCCc-c----cc---------cCCCEEEeecChHHHHHHHHhCCE--EEECCCHHHHHHHHHcCCCEEEEeCCCCchHH
Confidence 4331 1 11 23499998876 44889988988 9999999999999999999999999 78999
Q ss_pred cceeeeeecceEEEEecCCCCCcCHHHHHHHHHHH
Q 036520 395 LNARLLVDKDLAVQVERKDDGSFTRDGIAKALRLA 429 (473)
Q Consensus 395 ~na~~v~~~G~G~~l~~~~~~~~t~~~l~~~i~~l 429 (473)
.||++++++|+|+.++.. .++++.|+++|+++
T Consensus 286 ~~a~~l~~~G~~~~~~~~---~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 286 YNARKLEELGLGIVLSQE---DLTPERLAEFLERL 317 (318)
T ss_pred HHHHHHHHCCCeEEcccc---cCCHHHHHHHHhcC
Confidence 999999999999999887 89999999999875
No 30
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.92 E-value=5.4e-23 Score=195.83 Aligned_cols=326 Identities=18% Similarity=0.205 Sum_probs=204.6
Q ss_pred cEEEEecCCCccChHHHHHHHHHHHhCCC-eEEEEeCCCccccCCCCCCCcccCCCeEEEEecCCccccccccCCCCCCC
Q 036520 5 LHVVMLPWSAFGHLMPFFQLSIALAKSGV-KVSFISTPKNIQRLPKPAPESEVAALINFVEFPLPASAALDDKLLLPEGA 83 (473)
Q Consensus 5 ~~vl~~~~~~~gH~~p~l~la~~L~~~Gh-~Vt~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~l~~~~ 83 (473)
++|++...++.||+.|.++|+++|.++|+ +|.+..+....+..... ..++.++.++.. ++....
T Consensus 1 ~~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~~------~~~~~~~~I~~~---------~~~~~~ 65 (357)
T COG0707 1 KKIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLVK------QYGIEFELIPSG---------GLRRKG 65 (357)
T ss_pred CeEEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeecc------ccCceEEEEecc---------cccccC
Confidence 46889999999999999999999999999 57777655544433221 137778777732 222111
Q ss_pred ccCCCCChhhHHHHHHHHhh--hhhHHHHHHHhCCCcEEEEcC--CcchHHHHHHHcCCCeEEEecchhHHHHHHhchhh
Q 036520 84 EATVDIPSENIQYLKIAYDL--LQHPFKQFVAQQSVDWIIVDV--MSHWAGKIAQEYHVPLLLFSAFSAAAFQFIANPEC 159 (473)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~--~~~~l~~ll~~~~pD~vI~D~--~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~ 159 (473)
. +..+...+.. ...+..++|++.+||+||.-. .+..+..+|..+|||.+..-..
T Consensus 66 -~--------~~~~~~~~~~~~~~~~a~~il~~~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEqn------------- 123 (357)
T COG0707 66 -S--------LKLLKAPFKLLKGVLQARKILKKLKPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQN------------- 123 (357)
T ss_pred -c--------HHHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCCccccHHHHHHHhCCCCEEEEecC-------------
Confidence 0 0111111211 344567889999999999964 3356668899999999976331
Q ss_pred hhcCCCCCCCCCCccccCCCccccCCCccccccccccccccccccCCCCchhhHHHHHHhhccccEEEEcCCchhhhHHH
Q 036520 160 LVGDGQKRVRPSAESLTSVPEWVDFPSSVALRTFDAIGMHHGFYGMNASGITDAHRTAEILHSCQAMAIRSCPEFEGEYL 239 (473)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~ 239 (473)
++++ ..+....+..-....+|+..+.
T Consensus 124 ---------------------~~~G------------------------------~ank~~~~~a~~V~~~f~~~~~--- 149 (357)
T COG0707 124 ---------------------AVPG------------------------------LANKILSKFAKKVASAFPKLEA--- 149 (357)
T ss_pred ---------------------CCcc------------------------------hhHHHhHHhhceeeeccccccc---
Confidence 1110 0011111111122223332110
Q ss_pred HHHHhhcCCCeEEee-ccCCCCCCCCCCCCchhhhhccccCCCCCcEEEEeecCcccCC-HHHHHHHHHHHhcCCCCEEE
Q 036520 240 NLLEKLTGKPVIPVG-LLTPEPNSAKGRDHQISKIFQWLDEQKPRSVVFVGFGSECKLS-KDQVYEIAYGLELSGLPFLW 317 (473)
Q Consensus 240 ~~~~~~~~~~~~~vG-p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~-~~~~~~~~~al~~~~~~~i~ 317 (473)
+ .-+.++..+| |+..+.... ...-..+ +....+++|+|.-||++... .+.+..++..+.+ +..+++
T Consensus 150 -~---~~~~~~~~tG~Pvr~~~~~~------~~~~~~~-~~~~~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~-~~~v~~ 217 (357)
T COG0707 150 -G---VKPENVVVTGIPVRPEFEEL------PAAEVRK-DGRLDKKTILVTGGSQGAKALNDLVPEALAKLAN-RIQVIH 217 (357)
T ss_pred -c---CCCCceEEecCcccHHhhcc------chhhhhh-hccCCCcEEEEECCcchhHHHHHHHHHHHHHhhh-CeEEEE
Confidence 0 0012477777 555432211 0001111 11114569999999988632 2333334444443 567777
Q ss_pred EEcCCCCCCCccccCchhhhhhcCCCc-eEEecccch-HHHhhCCCcceeeeccCchhHHHHHhhCCceeccccc----c
Q 036520 318 ALRKPEWATDDVDALPLGFADTIRGKG-IVSIGWAPQ-LEILAHPSIGTSLFHAGWGSVIETLQFGHSLVVLPLI----I 391 (473)
Q Consensus 318 ~~~~~~~~~~~~~~~p~~~~~~~~~~n-v~~~~~~pq-~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P~~----~ 391 (473)
.++... .+.........| +.+.+|..+ .++|+.+++ +||++|.+|+.|++++|+|+|.+|+- .
T Consensus 218 ~~G~~~---------~~~~~~~~~~~~~~~v~~f~~dm~~~~~~ADL--vIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~ 286 (357)
T COG0707 218 QTGKND---------LEELKSAYNELGVVRVLPFIDDMAALLAAADL--VISRAGALTIAELLALGVPAILVPYPPGADG 286 (357)
T ss_pred EcCcch---------HHHHHHHHhhcCcEEEeeHHhhHHHHHHhccE--EEeCCcccHHHHHHHhCCCEEEeCCCCCccc
Confidence 776542 122333333334 778888876 888888888 99999999999999999999999973 3
Q ss_pred ccccceeeeeecceEEEEecCCCCCcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHhc
Q 036520 392 DQPLNARLLVDKDLAVQVERKDDGSFTRDGIAKALRLATVSEEGEKLRVRAREAANTFN 450 (473)
Q Consensus 392 DQ~~na~~v~~~G~G~~l~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~ 450 (473)
||..||..++++|.|..++.. .+|.+++.+.|.++++ +++-.++++.-++.+.
T Consensus 287 ~Q~~NA~~l~~~gaa~~i~~~---~lt~~~l~~~i~~l~~---~~~~l~~m~~~a~~~~ 339 (357)
T COG0707 287 HQEYNAKFLEKAGAALVIRQS---ELTPEKLAELILRLLS---NPEKLKAMAENAKKLG 339 (357)
T ss_pred hHHHHHHHHHhCCCEEEeccc---cCCHHHHHHHHHHHhc---CHHHHHHHHHHHHhcC
Confidence 899999999999999999998 8999999999999999 5444444444444443
No 31
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.92 E-value=8.1e-24 Score=202.84 Aligned_cols=307 Identities=17% Similarity=0.172 Sum_probs=174.6
Q ss_pred EEEEecCC-CccChHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCcccCCCeE-EEEecCCccccccccCCCCCCC
Q 036520 6 HVVMLPWS-AFGHLMPFFQLSIALAKSGVKVSFISTPKNIQRLPKPAPESEVAALIN-FVEFPLPASAALDDKLLLPEGA 83 (473)
Q Consensus 6 ~vl~~~~~-~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~i~-~~~i~~~~~~~~~~~~~l~~~~ 83 (473)
||++...+ +.||+.|.++|+++|.+ ||+|+|+++......+... ++. +..++ ++....
T Consensus 1 ril~~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~~~~~~~~~--------~~~~~~~~p-----------~~~~~~ 60 (321)
T TIGR00661 1 KILYSVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGRSKNYISKY--------GFKVFETFP-----------GIKLKG 60 (321)
T ss_pred CEEEEEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCCHHHhhhhh--------cCcceeccC-----------CceEee
Confidence 47775555 55999999999999999 9999999877744433332 222 22221 000000
Q ss_pred ccCCCCChhhHHHHH---HHHhhhhhHHHHHHHhCCCcEEEEcCCcchHHHHHHHcCCCeEEEecchhHHHHHHhchhhh
Q 036520 84 EATVDIPSENIQYLK---IAYDLLQHPFKQFVAQQSVDWIIVDVMSHWAGKIAQEYHVPLLLFSAFSAAAFQFIANPECL 160 (473)
Q Consensus 84 ~~~~~~~~~~~~~~~---~~~~~~~~~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~ 160 (473)
.+. . .+....+. ...........+++++.+||+||+| +.+.+..+|+.+|||++.+..+.... .
T Consensus 61 ~~~-~--~~~~~~l~~~~~~~~~~~~~~~~~l~~~~pDlVi~d-~~~~~~~aA~~~~iP~i~i~~q~~~~------~--- 127 (321)
T TIGR00661 61 EDG-K--VNIVKTLRNKEYSPKKAIRREINIIREYNPDLIISD-FEYSTVVAAKLLKIPVICISNQNYTR------Y--- 127 (321)
T ss_pred cCC-c--CcHHHHHHhhccccHHHHHHHHHHHHhcCCCEEEEC-CchHHHHHHHhcCCCEEEEecchhhc------C---
Confidence 000 0 11122221 1111233345678899999999999 67778899999999999886632110 0
Q ss_pred hcCCCCCCCCCCccccCCCccccCCCccccccccccccccccccCCCCchhhHHHH-HHhhccccEEEEcCCchhhhHHH
Q 036520 161 VGDGQKRVRPSAESLTSVPEWVDFPSSVALRTFDAIGMHHGFYGMNASGITDAHRT-AEILHSCQAMAIRSCPEFEGEYL 239 (473)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~le~~~~ 239 (473)
|.. .+ . ........ .......+...+..+.....
T Consensus 128 ----------------------~~~----~~-------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 162 (321)
T TIGR00661 128 ----------------------PLK----TD-------------L---IVYPTMAALRIFNERCERFIVPDYPFPYT--- 162 (321)
T ss_pred ----------------------Ccc----cc-------------h---hHHHHHHHHHHhccccceEeeecCCCCCC---
Confidence 000 00 0 00000111 11111222222222211110
Q ss_pred HHHHhhcCCCeE-EeeccCCCCCCCCCCCCchhhhhccccCCCCCcEEEEeecCcccCCHHHHHHHHHHHhcCCCCEEEE
Q 036520 240 NLLEKLTGKPVI-PVGLLTPEPNSAKGRDHQISKIFQWLDEQKPRSVVFVGFGSECKLSKDQVYEIAYGLELSGLPFLWA 318 (473)
Q Consensus 240 ~~~~~~~~~~~~-~vGp~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~ 318 (473)
..|+... .-+|.. ..+..++... .++.|+|.+|+... ..+++++.+.+. +.++
T Consensus 163 -----~~p~~~~~~~~~~~------------~~~~~~~~~~--~~~~iLv~~g~~~~------~~l~~~l~~~~~-~~~i 216 (321)
T TIGR00661 163 -----ICPKIIKNMEGPLI------------RYDVDDVDNY--GEDYILVYIGFEYR------YKILELLGKIAN-VKFV 216 (321)
T ss_pred -----CCccccccCCCccc------------chhhhccccC--CCCcEEEECCcCCH------HHHHHHHHhCCC-eEEE
Confidence 0010000 001111 1122223222 23477777787542 445677766553 2233
Q ss_pred EcCCCCCCCccccCchhhhhhcCCCceEEecccc--hHHHhhCCCcceeeeccCchhHHHHHhhCCceecccccc--ccc
Q 036520 319 LRKPEWATDDVDALPLGFADTIRGKGIVSIGWAP--QLEILAHPSIGTSLFHAGWGSVIETLQFGHSLVVLPLII--DQP 394 (473)
Q Consensus 319 ~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~p--q~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P~~~--DQ~ 394 (473)
+...... ...++ +|+.+.+|.| ..++|..|++ +|||||++|++|++++|+|+|++|... ||.
T Consensus 217 ~~~~~~~---~~~~~---------~~v~~~~~~~~~~~~~l~~ad~--vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~ 282 (321)
T TIGR00661 217 CYSYEVA---KNSYN---------ENVEIRRITTDNFKELIKNAEL--VITHGGFSLISEALSLGKPLIVIPDLGQFEQG 282 (321)
T ss_pred EeCCCCC---ccccC---------CCEEEEECChHHHHHHHHhCCE--EEECCChHHHHHHHHcCCCEEEEcCCCcccHH
Confidence 2222111 12233 3899889997 4677788887 999999999999999999999999854 999
Q ss_pred cceeeeeecceEEEEecCCCCCcCHHHHHHHHHHHhcCcchHHHH
Q 036520 395 LNARLLVDKDLAVQVERKDDGSFTRDGIAKALRLATVSEEGEKLR 439 (473)
Q Consensus 395 ~na~~v~~~G~G~~l~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~ 439 (473)
.||+.++++|+|+.++.. .+ ++.+++.++++ |+.|.
T Consensus 283 ~na~~l~~~g~~~~l~~~---~~---~~~~~~~~~~~---~~~~~ 318 (321)
T TIGR00661 283 NNAVKLEDLGCGIALEYK---EL---RLLEAILDIRN---MKRYK 318 (321)
T ss_pred HHHHHHHHCCCEEEcChh---hH---HHHHHHHhccc---ccccc
Confidence 999999999999999876 44 56667767776 55553
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.87 E-value=1.5e-19 Score=176.59 Aligned_cols=341 Identities=18% Similarity=0.161 Sum_probs=208.4
Q ss_pred cEEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCCcc--ccCCCCCCCcccCCCeEEEEecCCccccccccCCCCCC
Q 036520 5 LHVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPKNI--QRLPKPAPESEVAALINFVEFPLPASAALDDKLLLPEG 82 (473)
Q Consensus 5 ~~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~--~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~l~~~ 82 (473)
|||+|...+..||...++.|+++|.++||+|++++..... ...+. .+++++.++.+. +..
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~~~~~--------~g~~~~~~~~~~---------~~~- 63 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGMEARLVPK--------AGIEFHFIPSGG---------LRR- 63 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchhhhcccc--------CCCcEEEEeccC---------cCC-
Confidence 7899999888899999999999999999999999875521 11111 266677665211 110
Q ss_pred CccCCCCChhhHHHHHHHHhhhhhHHHHHHHhCCCcEEEEcCC--cchHHHHHHHcCCCeEEEecchhHHHHHHhchhhh
Q 036520 83 AEATVDIPSENIQYLKIAYDLLQHPFKQFVAQQSVDWIIVDVM--SHWAGKIAQEYHVPLLLFSAFSAAAFQFIANPECL 160 (473)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~--~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~ 160 (473)
........... ..-.....+.+++++.+||+|++... .+.+..+++..++|+|......
T Consensus 64 -----~~~~~~l~~~~-~~~~~~~~~~~~ik~~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~~------------- 124 (357)
T PRK00726 64 -----KGSLANLKAPF-KLLKGVLQARKILKRFKPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQNA------------- 124 (357)
T ss_pred -----CChHHHHHHHH-HHHHHHHHHHHHHHhcCCCEEEECCCcchhHHHHHHHHcCCCEEEEcCCC-------------
Confidence 00001001111 11223445677889999999999952 3445567888999998541100
Q ss_pred hcCCCCCCCCCCccccCCCccccCCCccccccccccccccccccCCCCchhhHHHHHHhhccccEEEEcCCchhhhHHHH
Q 036520 161 VGDGQKRVRPSAESLTSVPEWVDFPSSVALRTFDAIGMHHGFYGMNASGITDAHRTAEILHSCQAMAIRSCPEFEGEYLN 240 (473)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~ 240 (473)
.+ . ...++ .....+.++..+...+
T Consensus 125 ---------------------~~-------------~--------------~~~r~--~~~~~d~ii~~~~~~~------ 148 (357)
T PRK00726 125 ---------------------VP-------------G--------------LANKL--LARFAKKVATAFPGAF------ 148 (357)
T ss_pred ---------------------Cc-------------c--------------HHHHH--HHHHhchheECchhhh------
Confidence 00 0 00000 1112233332221111
Q ss_pred HHHhhcCCCeEEeeccCCCCCCCCCCCCchhhhhccccCCCCCcEEEEeecCcccCCHHHHHH-HHHHHhcCCC--CEEE
Q 036520 241 LLEKLTGKPVIPVGLLTPEPNSAKGRDHQISKIFQWLDEQKPRSVVFVGFGSECKLSKDQVYE-IAYGLELSGL--PFLW 317 (473)
Q Consensus 241 ~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~-~~~al~~~~~--~~i~ 317 (473)
.+.-+.++.++|.......... .... .+ +...+...+|++..|+.. ...+.. +.+++.+... .+++
T Consensus 149 --~~~~~~~i~vi~n~v~~~~~~~--~~~~---~~-~~~~~~~~~i~~~gg~~~---~~~~~~~l~~a~~~~~~~~~~~~ 217 (357)
T PRK00726 149 --PEFFKPKAVVTGNPVREEILAL--AAPP---AR-LAGREGKPTLLVVGGSQG---ARVLNEAVPEALALLPEALQVIH 217 (357)
T ss_pred --hccCCCCEEEECCCCChHhhcc--cchh---hh-ccCCCCCeEEEEECCcHh---HHHHHHHHHHHHHHhhhCcEEEE
Confidence 0112356788885432211110 0000 01 111122336666545532 222222 3355554433 3445
Q ss_pred EEcCCCCCCCccccCchhhhhhcC-CCceEEecccc-hHHHhhCCCcceeeeccCchhHHHHHhhCCceecccc----cc
Q 036520 318 ALRKPEWATDDVDALPLGFADTIR-GKGIVSIGWAP-QLEILAHPSIGTSLFHAGWGSVIETLQFGHSLVVLPL----II 391 (473)
Q Consensus 318 ~~~~~~~~~~~~~~~p~~~~~~~~-~~nv~~~~~~p-q~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P~----~~ 391 (473)
.++.+.. +...+..+ .-++.+.+|+. ..+++..+++ +|+|+|.++++||+++|+|+|++|. .+
T Consensus 218 ~~G~g~~---------~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~--~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~ 286 (357)
T PRK00726 218 QTGKGDL---------EEVRAAYAAGINAEVVPFIDDMAAAYAAADL--VICRAGASTVAELAAAGLPAILVPLPHAADD 286 (357)
T ss_pred EcCCCcH---------HHHHHHhhcCCcEEEeehHhhHHHHHHhCCE--EEECCCHHHHHHHHHhCCCEEEecCCCCCcC
Confidence 5554321 11211111 11377889984 4899999999 9999999999999999999999997 36
Q ss_pred ccccceeeeeecceEEEEecCCCCCcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHhccCCCcHHHHHHHHHHH
Q 036520 392 DQPLNARLLVDKDLAVQVERKDDGSFTRDGIAKALRLATVSEEGEKLRVRAREAANTFNDKKLHDDYSVRFVEYL 466 (473)
Q Consensus 392 DQ~~na~~v~~~G~G~~l~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 466 (473)
||..|+..+.+.|.|..+..+ .++.+.|+++|.++++ ++++++++.+-+....+..+....++.+.+.+
T Consensus 287 ~~~~~~~~i~~~~~g~~~~~~---~~~~~~l~~~i~~ll~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (357)
T PRK00726 287 HQTANARALVDAGAALLIPQS---DLTPEKLAEKLLELLS---DPERLEAMAEAARALGKPDAAERLADLIEELA 355 (357)
T ss_pred cHHHHHHHHHHCCCEEEEEcc---cCCHHHHHHHHHHHHc---CHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHh
Confidence 899999999999999999886 6789999999999999 88999888888888777777777777776654
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.83 E-value=2.3e-18 Score=167.92 Aligned_cols=328 Identities=19% Similarity=0.154 Sum_probs=196.6
Q ss_pred EEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCcccCCCeEEEEecCCccccccccCCCCCCCcc
Q 036520 6 HVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPKNIQRLPKPAPESEVAALINFVEFPLPASAALDDKLLLPEGAEA 85 (473)
Q Consensus 6 ~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~l~~~~~~ 85 (473)
||++...++.||...++.+++.|.++||+|++++....... ... ...+++++.++.+. +..
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~-~~~-----~~~~~~~~~~~~~~---------~~~---- 61 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLEA-RLV-----PKAGIPLHTIPVGG---------LRR---- 61 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcchh-hcc-----cccCCceEEEEecC---------cCC----
Confidence 58899999999999999999999999999999987542111 110 01256676665311 100
Q ss_pred CCCCChhhHHHHHHHH--hhhhhHHHHHHHhCCCcEEEEcCC--cchHHHHHHHcCCCeEEEecchhHHHHHHhchhhhh
Q 036520 86 TVDIPSENIQYLKIAY--DLLQHPFKQFVAQQSVDWIIVDVM--SHWAGKIAQEYHVPLLLFSAFSAAAFQFIANPECLV 161 (473)
Q Consensus 86 ~~~~~~~~~~~~~~~~--~~~~~~l~~ll~~~~pD~vI~D~~--~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 161 (473)
.. .+..+...+ -.....+.+++++.+||+|++... ...+..+|+..++|.+.....
T Consensus 62 --~~---~~~~~~~~~~~~~~~~~~~~~i~~~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~--------------- 121 (350)
T cd03785 62 --KG---SLKKLKAPFKLLKGVLQARKILKKFKPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQN--------------- 121 (350)
T ss_pred --CC---hHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCcchHHHHHHHHhCCCEEEEcCC---------------
Confidence 00 011111111 123345677888899999998742 345567889999998853110
Q ss_pred cCCCCCCCCCCccccCCCccccCCCccccccccccccccccccCCCCchhhHHHHHHhhccccEEEEcCCchhhhHHHHH
Q 036520 162 GDGQKRVRPSAESLTSVPEWVDFPSSVALRTFDAIGMHHGFYGMNASGITDAHRTAEILHSCQAMAIRSCPEFEGEYLNL 241 (473)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~ 241 (473)
..+ . ...+ ......+.+++.+....+.
T Consensus 122 -------------------~~~-------------~--------------~~~~--~~~~~~~~vi~~s~~~~~~----- 148 (350)
T cd03785 122 -------------------AVP-------------G--------------LANR--LLARFADRVALSFPETAKY----- 148 (350)
T ss_pred -------------------CCc-------------c--------------HHHH--HHHHhhCEEEEcchhhhhc-----
Confidence 000 0 0001 1122345555443322110
Q ss_pred HHhhcCCCeEEeeccCCCCCCCCCCCCchhhhhccccCCCCCcEEEEeecCcccCCH-HHHHHHHHHHhcCCCCEEEEEc
Q 036520 242 LEKLTGKPVIPVGLLTPEPNSAKGRDHQISKIFQWLDEQKPRSVVFVGFGSECKLSK-DQVYEIAYGLELSGLPFLWALR 320 (473)
Q Consensus 242 ~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~-~~~~~~~~al~~~~~~~i~~~~ 320 (473)
..+.++.+||......... . .+ . .+.+...+.+.+|++..|+...... +.+..++..+.+.+..+++..+
T Consensus 149 ---~~~~~~~~i~n~v~~~~~~---~-~~-~-~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~~~~~~~~i~G 219 (350)
T cd03785 149 ---FPKDKAVVTGNPVREEILA---L-DR-E-RARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELLRKRLQVIHQTG 219 (350)
T ss_pred ---CCCCcEEEECCCCchHHhh---h-hh-h-HHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhccCeEEEEEcC
Confidence 1134577777533211110 0 00 0 1122222233356665565542111 2233344444433445555665
Q ss_pred CCCCCCCccccCchhhhhhcC--CCceEEeccc-chHHHhhCCCcceeeeccCchhHHHHHhhCCceecccc----cccc
Q 036520 321 KPEWATDDVDALPLGFADTIR--GKGIVSIGWA-PQLEILAHPSIGTSLFHAGWGSVIETLQFGHSLVVLPL----IIDQ 393 (473)
Q Consensus 321 ~~~~~~~~~~~~p~~~~~~~~--~~nv~~~~~~-pq~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P~----~~DQ 393 (473)
.+.. +.+.+... .+|+.+.+|+ +..++|..+++ +|+++|.+|+.||+++|+|+|++|. ..+|
T Consensus 220 ~g~~---------~~l~~~~~~~~~~v~~~g~~~~~~~~l~~ad~--~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~ 288 (350)
T cd03785 220 KGDL---------EEVKKAYEELGVNYEVFPFIDDMAAAYAAADL--VISRAGASTVAELAALGLPAILIPLPYAADDHQ 288 (350)
T ss_pred CccH---------HHHHHHHhccCCCeEEeehhhhHHHHHHhcCE--EEECCCHhHHHHHHHhCCCEEEeecCCCCCCcH
Confidence 4311 11221111 3589999998 45889999998 9999999999999999999999986 3578
Q ss_pred ccceeeeeecceEEEEecCCCCCcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHhcc
Q 036520 394 PLNARLLVDKDLAVQVERKDDGSFTRDGIAKALRLATVSEEGEKLRVRAREAANTFND 451 (473)
Q Consensus 394 ~~na~~v~~~G~G~~l~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~ 451 (473)
..|+..+.+.|.|..++.. ..+.+++.++|.++++ +++.++++.+-+.....
T Consensus 289 ~~~~~~l~~~g~g~~v~~~---~~~~~~l~~~i~~ll~---~~~~~~~~~~~~~~~~~ 340 (350)
T cd03785 289 TANARALVKAGAAVLIPQE---ELTPERLAAALLELLS---DPERLKAMAEAARSLAR 340 (350)
T ss_pred HHhHHHHHhCCCEEEEecC---CCCHHHHHHHHHHHhc---CHHHHHHHHHHHHhcCC
Confidence 8999999999999999875 5789999999999999 77777766666555443
No 34
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.77 E-value=1.4e-16 Score=144.53 Aligned_cols=341 Identities=16% Similarity=0.196 Sum_probs=206.2
Q ss_pred CCccEEEEecCC--CccChHHHHHHHHHHHhC--CCeEEEEeCCCccccCCCCCCCcccCCCeEEEEecCCccccccccC
Q 036520 2 ARKLHVVMLPWS--AFGHLMPFFQLSIALAKS--GVKVSFISTPKNIQRLPKPAPESEVAALINFVEFPLPASAALDDKL 77 (473)
Q Consensus 2 ~~~~~vl~~~~~--~~gH~~p~l~la~~L~~~--Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~ 77 (473)
.+.+||+|.+.- +-||+.++..+|.+|++. |.+|++++......-+.- +.+++++.+|- . .
T Consensus 7 ~~~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~~-------~~gVd~V~LPs--l------~ 71 (400)
T COG4671 7 SKRPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFPG-------PAGVDFVKLPS--L------I 71 (400)
T ss_pred hccceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCCC-------cccCceEecCc--e------E
Confidence 345699999986 449999999999999998 999999998776655433 35899999872 1 1
Q ss_pred CCCCCCccCCCCChhhHHHHHHHHhhhhhHHHHHHHhCCCcEEEEcCCcchHHHHHHHcCCCeEEEecchhHHHHHHhch
Q 036520 78 LLPEGAEATVDIPSENIQYLKIAYDLLQHPFKQFVAQQSVDWIIVDVMSHWAGKIAQEYHVPLLLFSAFSAAAFQFIANP 157 (473)
Q Consensus 78 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~ 157 (473)
....+.....+...+ .....+.-..-+...++..+||++|+|.+.+... -+.+ |. ..+..-
T Consensus 72 k~~~G~~~~~d~~~~----l~e~~~~Rs~lil~t~~~fkPDi~IVd~~P~Glr--~EL~--pt-----------L~yl~~ 132 (400)
T COG4671 72 KGDNGEYGLVDLDGD----LEETKKLRSQLILSTAETFKPDIFIVDKFPFGLR--FELL--PT-----------LEYLKT 132 (400)
T ss_pred ecCCCceeeeecCCC----HHHHHHHHHHHHHHHHHhcCCCEEEEeccccchh--hhhh--HH-----------HHHHhh
Confidence 122222222222222 2223333344456667788999999997665411 1100 00 000000
Q ss_pred hhhhcCCCCCCCCCCccccCCCccccCCCccccccccccccccccccCCCCchhhHHHHHHhhccccEEEEcCCchhhhH
Q 036520 158 ECLVGDGQKRVRPSAESLTSVPEWVDFPSSVALRTFDAIGMHHGFYGMNASGITDAHRTAEILHSCQAMAIRSCPEFEGE 237 (473)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~ 237 (473)
.. ....+..+++.+.++.. ...+.....+...-+.-+.+++...+++..+
T Consensus 133 --------------------~~------t~~vL~lr~i~D~p~~~----~~~w~~~~~~~~I~r~yD~V~v~GdP~f~d~ 182 (400)
T COG4671 133 --------------------TG------TRLVLGLRSIRDIPQEL----EADWRRAETVRLINRFYDLVLVYGDPDFYDP 182 (400)
T ss_pred --------------------cC------CcceeehHhhhhchhhh----ccchhhhHHHHHHHHhheEEEEecCccccCh
Confidence 00 00001111222222111 0111111122233334566777766665432
Q ss_pred HHHH-HHhhcCCCeEEeeccCCCCCCCCCCCCchhhhhccccCCCCCcEEEEeecCcccCCHHHHHHHHHHHhc-CCCC-
Q 036520 238 YLNL-LEKLTGKPVIPVGLLTPEPNSAKGRDHQISKIFQWLDEQKPRSVVFVGFGSECKLSKDQVYEIAYGLEL-SGLP- 314 (473)
Q Consensus 238 ~~~~-~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~-~~~~- 314 (473)
...+ ..+....++.++|-+ .++.+.. + .+ +.. .+++.-|+||-|... ...+.+...++|... .+.+
T Consensus 183 ~~~~~~~~~i~~k~~ytG~v-q~~~~~~--~-~p-----~~~-~pE~~~Ilvs~GGG~-dG~eLi~~~l~A~~~l~~l~~ 251 (400)
T COG4671 183 LTEFPFAPAIRAKMRYTGFV-QRSLPHL--P-LP-----PHE-APEGFDILVSVGGGA-DGAELIETALAAAQLLAGLNH 251 (400)
T ss_pred hhcCCccHhhhhheeEeEEe-eccCcCC--C-CC-----CcC-CCccceEEEecCCCh-hhHHHHHHHHHHhhhCCCCCc
Confidence 1111 112233569999988 3321110 0 00 011 144458999988755 355666666666644 4554
Q ss_pred -EEEEEcCCCCCCCccccCchhhhh-----hcCCCceEEecccch-HHHhhCCCcceeeeccCchhHHHHHhhCCceecc
Q 036520 315 -FLWALRKPEWATDDVDALPLGFAD-----TIRGKGIVSIGWAPQ-LEILAHPSIGTSLFHAGWGSVIETLQFGHSLVVL 387 (473)
Q Consensus 315 -~i~~~~~~~~~~~~~~~~p~~~~~-----~~~~~nv~~~~~~pq-~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~ 387 (473)
.+++++.- .|..... ..+.+++.+..|-.+ .+++.-++. +|+-||+||++|-|.+|+|.|++
T Consensus 252 ~~~ivtGP~---------MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~~--vVSm~GYNTvCeILs~~k~aLiv 320 (400)
T COG4671 252 KWLIVTGPF---------MPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGARL--VVSMGGYNTVCEILSFGKPALIV 320 (400)
T ss_pred ceEEEeCCC---------CCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhhe--eeecccchhhhHHHhCCCceEEe
Confidence 44444432 3322111 123578999999876 888888888 99999999999999999999999
Q ss_pred cccc---ccccceeeeeecceEEEEecCCCCCcCHHHHHHHHHHHhc
Q 036520 388 PLII---DQPLNARLLVDKDLAVQVERKDDGSFTRDGIAKALRLATV 431 (473)
Q Consensus 388 P~~~---DQ~~na~~v~~~G~G~~l~~~~~~~~t~~~l~~~i~~ll~ 431 (473)
|... ||..-|+|++++|+.-++... .+|+..++++|...+.
T Consensus 321 Pr~~p~eEQliRA~Rl~~LGL~dvL~pe---~lt~~~La~al~~~l~ 364 (400)
T COG4671 321 PRAAPREEQLIRAQRLEELGLVDVLLPE---NLTPQNLADALKAALA 364 (400)
T ss_pred ccCCCcHHHHHHHHHHHhcCcceeeCcc---cCChHHHHHHHHhccc
Confidence 9853 999999999999999999987 8999999999999988
No 35
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.77 E-value=2.4e-16 Score=153.53 Aligned_cols=333 Identities=18% Similarity=0.151 Sum_probs=184.1
Q ss_pred cEEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCcccCCCeEEEEecCCccccccccCCCCCCCc
Q 036520 5 LHVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPKNIQRLPKPAPESEVAALINFVEFPLPASAALDDKLLLPEGAE 84 (473)
Q Consensus 5 ~~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~l~~~~~ 84 (473)
|||+|++.+..||+.....|+++|.++||+|++++.+..... ... ...+++++.++... ..
T Consensus 1 ~~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~~--~~~----~~~g~~~~~i~~~~---------~~---- 61 (348)
T TIGR01133 1 KKVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKRGLEK--RLV----PKAGIEFYFIPVGG---------LR---- 61 (348)
T ss_pred CeEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCCcchh--ccc----ccCCCceEEEeccC---------cC----
Confidence 589999999999999888999999999999999986442110 000 01356666665211 00
Q ss_pred cCCCCChhhHHHHHHHHhhhhhHHHHHHHhCCCcEEEEcCCc--chHHHHHHHcCCCeEEEecchhHHHHHHhchhhhhc
Q 036520 85 ATVDIPSENIQYLKIAYDLLQHPFKQFVAQQSVDWIIVDVMS--HWAGKIAQEYHVPLLLFSAFSAAAFQFIANPECLVG 162 (473)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~--~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~ 162 (473)
.......+...... -.....+.+++++.+||+|++.... ..+..+++.+++|.+.+.. ..
T Consensus 62 --~~~~~~~l~~~~~~-~~~~~~l~~~i~~~~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~~~-~~-------------- 123 (348)
T TIGR01133 62 --RKGSFRLIKTPLKL-LKAVFQARRILKKFKPDAVIGFGGYVSGPAGLAAKLLGIPLFHHEQ-NA-------------- 123 (348)
T ss_pred --CCChHHHHHHHHHH-HHHHHHHHHHHHhcCCCEEEEcCCcccHHHHHHHHHcCCCEEEECC-CC--------------
Confidence 00011111111111 1133456788899999999997432 3455578889999874311 00
Q ss_pred CCCCCCCCCCccccCCCccccCCCccccccccccccccccccCCCCchhhHHHHHHhhccccEEEEcCCchhhhHHHHHH
Q 036520 163 DGQKRVRPSAESLTSVPEWVDFPSSVALRTFDAIGMHHGFYGMNASGITDAHRTAEILHSCQAMAIRSCPEFEGEYLNLL 242 (473)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~ 242 (473)
.+ ....+ ...+..+.+++.+.. ..
T Consensus 124 -------------------~~---------------------------~~~~~--~~~~~~d~ii~~~~~-~~------- 147 (348)
T TIGR01133 124 -------------------VP---------------------------GLTNK--LLSRFAKKVLISFPG-AK------- 147 (348)
T ss_pred -------------------Cc---------------------------cHHHH--HHHHHhCeeEECchh-Hh-------
Confidence 00 00001 112334445443321 11
Q ss_pred HhhcCCCeEEeec-cCCCCCCCCCCCCchhhhhccccCCCCCcEEEEeecCcccCC-HHHHHHHHHHHhcCCCCEEEEEc
Q 036520 243 EKLTGKPVIPVGL-LTPEPNSAKGRDHQISKIFQWLDEQKPRSVVFVGFGSECKLS-KDQVYEIAYGLELSGLPFLWALR 320 (473)
Q Consensus 243 ~~~~~~~~~~vGp-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~-~~~~~~~~~al~~~~~~~i~~~~ 320 (473)
+.+ ...+||. +....... .... +.+.-.+++.+|.+..|+..... .+.+...+..+...+..+++..+
T Consensus 148 -~~~--~~~~i~n~v~~~~~~~---~~~~----~~~~~~~~~~~i~~~gg~~~~~~~~~~l~~a~~~l~~~~~~~~~~~g 217 (348)
T TIGR01133 148 -DHF--EAVLVGNPVRQEIRSL---PVPR----ERFGLREGKPTILVLGGSQGAKILNELVPKALAKLAEKGIQIVHQTG 217 (348)
T ss_pred -hcC--CceEEcCCcCHHHhcc---cchh----hhcCCCCCCeEEEEECCchhHHHHHHHHHHHHHHHhhcCcEEEEECC
Confidence 111 1244552 21110000 0000 11221222334444334543211 01122223333333455655443
Q ss_pred CCCCCCCccccCchhhhhhcCCCce-EEeccc--chHHHhhCCCcceeeeccCchhHHHHHhhCCceeccccc---cccc
Q 036520 321 KPEWATDDVDALPLGFADTIRGKGI-VSIGWA--PQLEILAHPSIGTSLFHAGWGSVIETLQFGHSLVVLPLI---IDQP 394 (473)
Q Consensus 321 ~~~~~~~~~~~~p~~~~~~~~~~nv-~~~~~~--pq~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P~~---~DQ~ 394 (473)
+.. . +.+.......++ .+..|. +-.++|+.+++ +|+++|.+++.||+++|+|+|++|.. .+|.
T Consensus 218 ~~~--------~-~~l~~~~~~~~l~~~v~~~~~~~~~~l~~ad~--~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~ 286 (348)
T TIGR01133 218 KND--------L-EKVKNVYQELGIEAIVTFIDENMAAAYAAADL--VISRAGASTVAELAAAGVPAILIPYPYAADDQY 286 (348)
T ss_pred cch--------H-HHHHHHHhhCCceEEecCcccCHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEeeCCCCccchh
Confidence 321 1 122222222121 122233 45889999998 99999988999999999999999863 4678
Q ss_pred cceeeeeecceEEEEecCCCCCcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHhccCCCcHH
Q 036520 395 LNARLLVDKDLAVQVERKDDGSFTRDGIAKALRLATVSEEGEKLRVRAREAANTFNDKKLHDD 457 (473)
Q Consensus 395 ~na~~v~~~G~G~~l~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 457 (473)
.|+..+++.|.|..++.. ..+.++|.++|.++++ |++.++++.+-++...+....++
T Consensus 287 ~~~~~i~~~~~G~~~~~~---~~~~~~l~~~i~~ll~---~~~~~~~~~~~~~~~~~~~~~~~ 343 (348)
T TIGR01133 287 YNAKFLEDLGAGLVIRQK---ELLPEKLLEALLKLLL---DPANLEAMAEAARKLAKPDAAKR 343 (348)
T ss_pred hHHHHHHHCCCEEEEecc---cCCHHHHHHHHHHHHc---CHHHHHHHHHHHHhcCCccHHHH
Confidence 899899999999988775 5689999999999999 78887776666655543333333
No 36
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.74 E-value=2.3e-16 Score=154.50 Aligned_cols=351 Identities=15% Similarity=0.111 Sum_probs=195.4
Q ss_pred cEEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCcccCCCeEEEEecCCccccccccCCCCCCCc
Q 036520 5 LHVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPKNIQRLPKPAPESEVAALINFVEFPLPASAALDDKLLLPEGAE 84 (473)
Q Consensus 5 ~~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~l~~~~~ 84 (473)
.||+|...++.||++|. .|+++|.++|++|+|++.... .+++.+. ...+.+..++. -++.
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg~--~m~~~g~----~~~~~~~~l~v---------~G~~---- 65 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKEHYPNARFIGVAGP--RMAAEGC----EVLYSMEELSV---------MGLR---- 65 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEccH--HHHhCcC----ccccChHHhhh---------ccHH----
Confidence 47999999999999999 999999999999999885532 2222211 01222222221 0110
Q ss_pred cCCCCChhhHHHHHHHHhhhhhHHHHHHHhCCCcEEEE-cCCcch--HHHHHHHcCCCeEEEecchhHHHHHHhchhhhh
Q 036520 85 ATVDIPSENIQYLKIAYDLLQHPFKQFVAQQSVDWIIV-DVMSHW--AGKIAQEYHVPLLLFSAFSAAAFQFIANPECLV 161 (473)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~-D~~~~~--~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 161 (473)
+....+.... ....++.+++++.+||+||. |.-++. .+.+|+.+|||.+.+.+ +-.
T Consensus 66 -------~~l~~~~~~~-~~~~~~~~~l~~~kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i~-P~~------------ 124 (385)
T TIGR00215 66 -------EVLGRLGRLL-KIRKEVVQLAKQAKPDLLVGIDAPDFNLTKELKKKDPGIKIIYYIS-PQV------------ 124 (385)
T ss_pred -------HHHHHHHHHH-HHHHHHHHHHHhcCCCEEEEeCCCCccHHHHHHHhhCCCCEEEEeC-CcH------------
Confidence 1111222222 23447778899999999886 532223 33488999999986532 000
Q ss_pred cCCCCCCCCCCccccCCCccccCCCccccccccccccccccccCCCCchhhHHHHHHhhccccEEEEcCCchhhhHHHHH
Q 036520 162 GDGQKRVRPSAESLTSVPEWVDFPSSVALRTFDAIGMHHGFYGMNASGITDAHRTAEILHSCQAMAIRSCPEFEGEYLNL 241 (473)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~ 241 (473)
| .|... +.....+..+.+++. ++ .+.+ +
T Consensus 125 -------------------w---------------aw~~~-------------~~r~l~~~~d~v~~~-~~-~e~~---~ 152 (385)
T TIGR00215 125 -------------------W---------------AWRKW-------------RAKKIEKATDFLLAI-LP-FEKA---F 152 (385)
T ss_pred -------------------h---------------hcCcc-------------hHHHHHHHHhHhhcc-CC-CcHH---H
Confidence 0 00000 011112223333332 22 2221 1
Q ss_pred HHhhcCCCeEEee-ccCCCCCCCCCCCCchhhhhccccCCCCCcEEEEeecCcccCCHHHHHHHHHHHhc-----CCCCE
Q 036520 242 LEKLTGKPVIPVG-LLTPEPNSAKGRDHQISKIFQWLDEQKPRSVVFVGFGSECKLSKDQVYEIAYGLEL-----SGLPF 315 (473)
Q Consensus 242 ~~~~~~~~~~~vG-p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~-----~~~~~ 315 (473)
++. .+.+..+|| |+....... ....++..+-+.-.+++++|.+--||....-...+..+++++.. .+.++
T Consensus 153 ~~~-~g~~~~~vGnPv~~~~~~~---~~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~ 228 (385)
T TIGR00215 153 YQK-KNVPCRFVGHPLLDAIPLY---KPDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRR 228 (385)
T ss_pred HHh-cCCCEEEECCchhhhcccc---CCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEE
Confidence 221 223567788 332221110 01112222222223334578777777764212334445544432 23445
Q ss_pred EEEEcCCCCCCCccccCchhhhhhc-CCCceEEecccchHHHhhCCCcceeeeccCchhHHHHHhhCCceecc----ccc
Q 036520 316 LWALRKPEWATDDVDALPLGFADTI-RGKGIVSIGWAPQLEILAHPSIGTSLFHAGWGSVIETLQFGHSLVVL----PLI 390 (473)
Q Consensus 316 i~~~~~~~~~~~~~~~~p~~~~~~~-~~~nv~~~~~~pq~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~----P~~ 390 (473)
++........ ..+ +.+.... ....+.+..+ ...++++.+++ +|+-.|..|+ |++++|+|+|++ |+.
T Consensus 229 vi~~~~~~~~----~~~-~~~~~~~~~~~~v~~~~~-~~~~~l~aADl--~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~ 299 (385)
T TIGR00215 229 VLPVVNFKRR----LQF-EQIKAEYGPDLQLHLIDG-DARKAMFAADA--ALLASGTAAL-EAALIKTPMVVGYRMKPLT 299 (385)
T ss_pred EEEeCCchhH----HHH-HHHHHHhCCCCcEEEECc-hHHHHHHhCCE--EeecCCHHHH-HHHHcCCCEEEEEcCCHHH
Confidence 5543322110 001 0111111 1113333322 34568888888 9999999888 999999999999 864
Q ss_pred c---------ccccceeeeeecceEEEEecCCCCCcCHHHHHHHHHHHhcCc-----chHHHHHHHHHHHHHhccCCCcH
Q 036520 391 I---------DQPLNARLLVDKDLAVQVERKDDGSFTRDGIAKALRLATVSE-----EGEKLRVRAREAANTFNDKKLHD 456 (473)
Q Consensus 391 ~---------DQ~~na~~v~~~G~G~~l~~~~~~~~t~~~l~~~i~~ll~~~-----~~~~~~~~a~~~~~~~~~~~~~~ 456 (473)
. .|..|+..+...|+...+... .+|++.|.+++.+++++. ...++++..+++.+.+.+.+.+.
T Consensus 300 ~~~~~~~~~~~~~~~~nil~~~~~~pel~q~---~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 376 (385)
T TIGR00215 300 FLIARRLVKTDYISLPNILANRLLVPELLQE---ECTPHPLAIALLLLLENGLKAYKEMHRERQFFEELRQRIYCNADSE 376 (385)
T ss_pred HHHHHHHHcCCeeeccHHhcCCccchhhcCC---CCCHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 2 388899999999999998776 899999999999999932 22356666777777776555566
Q ss_pred HHHHHHHH
Q 036520 457 DYSVRFVE 464 (473)
Q Consensus 457 ~~~~~~~~ 464 (473)
++++.+.+
T Consensus 377 ~~a~~i~~ 384 (385)
T TIGR00215 377 RAAQAVLE 384 (385)
T ss_pred HHHHHHhh
Confidence 66665543
No 37
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.73 E-value=6.9e-16 Score=152.07 Aligned_cols=164 Identities=15% Similarity=0.159 Sum_probs=113.3
Q ss_pred CCcEEEEeecCcccCCHHHHHHHHHHHhc-CCCCEEEEEcCCCCCCCccccCchhhhhhc--CCCceEEecccch-HHHh
Q 036520 282 PRSVVFVGFGSECKLSKDQVYEIAYGLEL-SGLPFLWALRKPEWATDDVDALPLGFADTI--RGKGIVSIGWAPQ-LEIL 357 (473)
Q Consensus 282 ~~~~V~vs~Gs~~~~~~~~~~~~~~al~~-~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~--~~~nv~~~~~~pq-~~ll 357 (473)
++++|++..|+.... ..+..+++++.+ .+.+++++.+.+.. +-+.+.+.. ..+|+.+.+|+++ .+++
T Consensus 201 ~~~~il~~~G~~~~~--k~~~~li~~l~~~~~~~~viv~G~~~~-------~~~~l~~~~~~~~~~v~~~g~~~~~~~l~ 271 (380)
T PRK13609 201 NKKILLIMAGAHGVL--GNVKELCQSLMSVPDLQVVVVCGKNEA-------LKQSLEDLQETNPDALKVFGYVENIDELF 271 (380)
T ss_pred CCcEEEEEcCCCCCC--cCHHHHHHHHhhCCCcEEEEEeCCCHH-------HHHHHHHHHhcCCCcEEEEechhhHHHHH
Confidence 344777766776532 234566666654 35666666553210 111122111 1248999999987 5899
Q ss_pred hCCCcceeeeccCchhHHHHHhhCCceecc-ccccccccceeeeeecceEEEEecCCCCCcCHHHHHHHHHHHhcCcchH
Q 036520 358 AHPSIGTSLFHAGWGSVIETLQFGHSLVVL-PLIIDQPLNARLLVDKDLAVQVERKDDGSFTRDGIAKALRLATVSEEGE 436 (473)
Q Consensus 358 ~~~~~~~~ItHGG~~s~~eal~~GvP~l~~-P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~t~~~l~~~i~~ll~~~~~~ 436 (473)
..+++ +|+.+|..|+.||+++|+|+|+. |..+.|..|+..+++.|+|+.. . +.+++.++|.++++ |+
T Consensus 272 ~~aD~--~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~~G~~~~~--~-----~~~~l~~~i~~ll~---~~ 339 (380)
T PRK13609 272 RVTSC--MITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYFERKGAAVVI--R-----DDEEVFAKTEALLQ---DD 339 (380)
T ss_pred HhccE--EEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHhCCcEEEE--C-----CHHHHHHHHHHHHC---CH
Confidence 99998 99999988999999999999985 6667778899888888998753 2 57899999999999 77
Q ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHH
Q 036520 437 KLRVRAREAANTFNDKKLHDDYSVRFVEYL 466 (473)
Q Consensus 437 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 466 (473)
+.++++.+-+..+.+..+.+..++.+.+.+
T Consensus 340 ~~~~~m~~~~~~~~~~~s~~~i~~~i~~~~ 369 (380)
T PRK13609 340 MKLLQMKEAMKSLYLPEPADHIVDDILAEN 369 (380)
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHhh
Confidence 777766665555554555556666665554
No 38
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.68 E-value=1.9e-15 Score=141.22 Aligned_cols=104 Identities=14% Similarity=0.118 Sum_probs=77.8
Q ss_pred cEEEEeecCcccCCHHHHHHHHHHHhcC--CCCEEEEEcCCCCCCCccccCchhhhhhc-CCCceEEecccch-HHHhhC
Q 036520 284 SVVFVGFGSECKLSKDQVYEIAYGLELS--GLPFLWALRKPEWATDDVDALPLGFADTI-RGKGIVSIGWAPQ-LEILAH 359 (473)
Q Consensus 284 ~~V~vs~Gs~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~p~~~~~~~-~~~nv~~~~~~pq-~~ll~~ 359 (473)
+.|+|+||.... ......+++++.+. +.++.++++..... .+.+.+.. ..+|+.+..++++ .++|..
T Consensus 171 ~~iLi~~GG~d~--~~~~~~~l~~l~~~~~~~~i~vv~G~~~~~-------~~~l~~~~~~~~~i~~~~~~~~m~~lm~~ 241 (279)
T TIGR03590 171 RRVLVSFGGADP--DNLTLKLLSALAESQINISITLVTGSSNPN-------LDELKKFAKEYPNIILFIDVENMAELMNE 241 (279)
T ss_pred CeEEEEeCCcCC--cCHHHHHHHHHhccccCceEEEEECCCCcC-------HHHHHHHHHhCCCEEEEeCHHHHHHHHHH
Confidence 489999996653 23445566777653 45677777754221 12222222 2458999999988 699999
Q ss_pred CCcceeeeccCchhHHHHHhhCCceeccccccccccceee
Q 036520 360 PSIGTSLFHAGWGSVIETLQFGHSLVVLPLIIDQPLNARL 399 (473)
Q Consensus 360 ~~~~~~ItHGG~~s~~eal~~GvP~l~~P~~~DQ~~na~~ 399 (473)
+++ +||+|| +|++|++++|+|+|++|...+|..||+.
T Consensus 242 aDl--~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 242 ADL--AIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred CCE--EEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 999 999999 9999999999999999999999999975
No 39
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.66 E-value=1.5e-14 Score=142.62 Aligned_cols=349 Identities=17% Similarity=0.133 Sum_probs=176.7
Q ss_pred ccEEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCcccCCCeEEEEecCCccccccccCCCCCCC
Q 036520 4 KLHVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPKNIQRLPKPAPESEVAALINFVEFPLPASAALDDKLLLPEGA 83 (473)
Q Consensus 4 ~~~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~l~~~~ 83 (473)
+|||+|+..++.||+.|.. ++++|.++++++.++..... .+++.+. ...+.++.++ ..
T Consensus 1 ~~ki~i~~Ggt~G~i~~a~-l~~~L~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~~l~--------------~~- 58 (380)
T PRK00025 1 PLRIAIVAGEVSGDLLGAG-LIRALKARAPNLEFVGVGGP--RMQAAGC----ESLFDMEELA--------------VM- 58 (380)
T ss_pred CceEEEEecCcCHHHHHHH-HHHHHHhcCCCcEEEEEccH--HHHhCCC----ccccCHHHhh--------------hc-
Confidence 4689999999999999999 99999998888777763321 1112110 0112222111 10
Q ss_pred ccCCCCChhhHHHHHHHHhhhhhHHHHHHHhCCCcEEEEcCC-cchH--HHHHHHcCCCeEEEecchhHHHHHHhchhhh
Q 036520 84 EATVDIPSENIQYLKIAYDLLQHPFKQFVAQQSVDWIIVDVM-SHWA--GKIAQEYHVPLLLFSAFSAAAFQFIANPECL 160 (473)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~-~~~~--~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~ 160 (473)
.. ......+.. .-.....+.+++++.+||+|+.-.. ..+. +..|++.|||++.+....
T Consensus 59 ----g~-~~~~~~~~~-~~~~~~~~~~~l~~~kPdivi~~~~~~~~~~~a~~a~~~~ip~i~~~~~~------------- 119 (380)
T PRK00025 59 ----GL-VEVLPRLPR-LLKIRRRLKRRLLAEPPDVFIGIDAPDFNLRLEKKLRKAGIPTIHYVSPS------------- 119 (380)
T ss_pred ----cH-HHHHHHHHH-HHHHHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHCCCCEEEEeCCc-------------
Confidence 00 011111111 1123456778899999999876322 2233 344778899988652210
Q ss_pred hcCCCCCCCCCCccccCCCccccCCCccccccccccccccccccCCCCchhhHHHHHHhhccccEEEEcCCchhhhHHHH
Q 036520 161 VGDGQKRVRPSAESLTSVPEWVDFPSSVALRTFDAIGMHHGFYGMNASGITDAHRTAEILHSCQAMAIRSCPEFEGEYLN 240 (473)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~ 240 (473)
.| . +. ..+.....+..+.+++.+....+
T Consensus 120 -------------------~~---------~------~~-------------~~~~~~~~~~~d~i~~~~~~~~~----- 147 (380)
T PRK00025 120 -------------------VW---------A------WR-------------QGRAFKIAKATDHVLALFPFEAA----- 147 (380)
T ss_pred -------------------hh---------h------cC-------------chHHHHHHHHHhhheeCCccCHH-----
Confidence 00 0 00 00011123334445544432211
Q ss_pred HHHhhcCCCeEEeeccCCCCCCCCCCCCchhhhhccccCCCCCcEEEEeecCcccCCHHHHHHHHHHHhc-----CCCCE
Q 036520 241 LLEKLTGKPVIPVGLLTPEPNSAKGRDHQISKIFQWLDEQKPRSVVFVGFGSECKLSKDQVYEIAYGLEL-----SGLPF 315 (473)
Q Consensus 241 ~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~-----~~~~~ 315 (473)
.+.. .+.++.++|.-..+.... .....++.+-+.-.+.+++|.+..||........+..+.+++.. .+.++
T Consensus 148 ~~~~-~g~~~~~~G~p~~~~~~~---~~~~~~~~~~l~~~~~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~~~~~~ 223 (380)
T PRK00025 148 FYDK-LGVPVTFVGHPLADAIPL---LPDRAAARARLGLDPDARVLALLPGSRGQEIKRLLPPFLKAAQLLQQRYPDLRF 223 (380)
T ss_pred HHHh-cCCCeEEECcCHHHhccc---ccChHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHhCCCeEE
Confidence 1222 223477777322111110 00112222223322234466666666543211223344444432 23456
Q ss_pred EEEEcCCCCCCCccccCchhhhhhcCC---CceEEecccchHHHhhCCCcceeeeccCchhHHHHHhhCCceeccc----
Q 036520 316 LWALRKPEWATDDVDALPLGFADTIRG---KGIVSIGWAPQLEILAHPSIGTSLFHAGWGSVIETLQFGHSLVVLP---- 388 (473)
Q Consensus 316 i~~~~~~~~~~~~~~~~p~~~~~~~~~---~nv~~~~~~pq~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P---- 388 (473)
+++.+.+... +.+.+..+. -++.+.. -.-..+++.+++ +|+.+|.+++ |++++|+|+|++|
T Consensus 224 ii~~~~~~~~--------~~~~~~~~~~~~~~v~~~~-~~~~~~~~~aDl--~v~~sG~~~l-Ea~a~G~PvI~~~~~~~ 291 (380)
T PRK00025 224 VLPLVNPKRR--------EQIEEALAEYAGLEVTLLD-GQKREAMAAADA--ALAASGTVTL-ELALLKVPMVVGYKVSP 291 (380)
T ss_pred EEecCChhhH--------HHHHHHHhhcCCCCeEEEc-ccHHHHHHhCCE--EEECccHHHH-HHHHhCCCEEEEEccCH
Confidence 6654422110 112221111 1333322 123788889998 9999998887 9999999999883
Q ss_pred cc--c--ccccc-e----eeeeecceEEEEecCCCCCcCHHHHHHHHHHHhcCcchHHHHHHHH----HHHHHhccCCCc
Q 036520 389 LI--I--DQPLN-A----RLLVDKDLAVQVERKDDGSFTRDGIAKALRLATVSEEGEKLRVRAR----EAANTFNDKKLH 455 (473)
Q Consensus 389 ~~--~--DQ~~n-a----~~v~~~G~G~~l~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~a~----~~~~~~~~~~~~ 455 (473)
+. . .|..| + ..+.+.|++..+... ..++++|.++|.++++ |++.++++. ++.+.+ ..+..
T Consensus 292 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~l~~~i~~ll~---~~~~~~~~~~~~~~~~~~~-~~~a~ 364 (380)
T PRK00025 292 LTFWIAKRLVKVPYVSLPNLLAGRELVPELLQE---EATPEKLARALLPLLA---DGARRQALLEGFTELHQQL-RCGAD 364 (380)
T ss_pred HHHHHHHHHHcCCeeehHHHhcCCCcchhhcCC---CCCHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHh-CCCHH
Confidence 31 1 33333 2 233444444445444 6789999999999999 776665443 344554 34455
Q ss_pred HHHHHHHHHHHHH
Q 036520 456 DDYSVRFVEYLKI 468 (473)
Q Consensus 456 ~~~~~~~~~~~~~ 468 (473)
.+.++.+.+.+.+
T Consensus 365 ~~~~~~i~~~~~~ 377 (380)
T PRK00025 365 ERAAQAVLELLKQ 377 (380)
T ss_pred HHHHHHHHHHhhh
Confidence 5565666555443
No 40
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.65 E-value=8.5e-15 Score=144.31 Aligned_cols=166 Identities=11% Similarity=0.118 Sum_probs=116.2
Q ss_pred CCcEEEEeecCcccCCHHHHHHHHHHHhc--CCCCEEEEEcCCCCCCCccccCchhhhhhc-CCCceEEecccch-HHHh
Q 036520 282 PRSVVFVGFGSECKLSKDQVYEIAYGLEL--SGLPFLWALRKPEWATDDVDALPLGFADTI-RGKGIVSIGWAPQ-LEIL 357 (473)
Q Consensus 282 ~~~~V~vs~Gs~~~~~~~~~~~~~~al~~--~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~-~~~nv~~~~~~pq-~~ll 357 (473)
++++|++..|+... ...+..+++++.+ .+.+++++.+... .+-+.+.+.. ..+++.+.+|+++ .+++
T Consensus 201 ~~~~ilv~~G~lg~--~k~~~~li~~~~~~~~~~~~vvv~G~~~-------~l~~~l~~~~~~~~~v~~~G~~~~~~~~~ 271 (391)
T PRK13608 201 DKQTILMSAGAFGV--SKGFDTMITDILAKSANAQVVMICGKSK-------ELKRSLTAKFKSNENVLILGYTKHMNEWM 271 (391)
T ss_pred CCCEEEEECCCccc--chhHHHHHHHHHhcCCCceEEEEcCCCH-------HHHHHHHHHhccCCCeEEEeccchHHHHH
Confidence 34588888888762 2344445555322 3456666655331 0111222221 2357889999976 6789
Q ss_pred hCCCcceeeeccCchhHHHHHhhCCceecc-ccccccccceeeeeecceEEEEecCCCCCcCHHHHHHHHHHHhcCcchH
Q 036520 358 AHPSIGTSLFHAGWGSVIETLQFGHSLVVL-PLIIDQPLNARLLVDKDLAVQVERKDDGSFTRDGIAKALRLATVSEEGE 436 (473)
Q Consensus 358 ~~~~~~~~ItHGG~~s~~eal~~GvP~l~~-P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~t~~~l~~~i~~ll~~~~~~ 436 (473)
+.+++ +|+..|..|+.||+++|+|+|++ |..+.|..|+..+++.|+|+... +.+++.++|.++++ |+
T Consensus 272 ~~aDl--~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~G~g~~~~-------~~~~l~~~i~~ll~---~~ 339 (391)
T PRK13608 272 ASSQL--MITKPGGITISEGLARCIPMIFLNPAPGQELENALYFEEKGFGKIAD-------TPEEAIKIVASLTN---GN 339 (391)
T ss_pred HhhhE--EEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhCCcEEEeC-------CHHHHHHHHHHHhc---CH
Confidence 99999 99998888999999999999998 67667778999999999997642 67889999999999 67
Q ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHH
Q 036520 437 KLRVRAREAANTFNDKKLHDDYSVRFVEYLKI 468 (473)
Q Consensus 437 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (473)
+.++++.+-+....+..+....++.+++.+..
T Consensus 340 ~~~~~m~~~~~~~~~~~s~~~i~~~l~~l~~~ 371 (391)
T PRK13608 340 EQLTNMISTMEQDKIKYATQTICRDLLDLIGH 371 (391)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhh
Confidence 66666666655555555556677777766654
No 41
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.61 E-value=1.5e-13 Score=135.24 Aligned_cols=111 Identities=17% Similarity=0.102 Sum_probs=86.7
Q ss_pred CceEEecccch-HHHhhCCCcceeeeccCchhHHHHHhhCCceeccccccccc-cceeeeeecceEEEEecCCCCCcCHH
Q 036520 343 KGIVSIGWAPQ-LEILAHPSIGTSLFHAGWGSVIETLQFGHSLVVLPLIIDQP-LNARLLVDKDLAVQVERKDDGSFTRD 420 (473)
Q Consensus 343 ~nv~~~~~~pq-~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P~~~DQ~-~na~~v~~~G~G~~l~~~~~~~~t~~ 420 (473)
.++.+.+|+++ .+++..+++ +|+.+|.+|+.||+++|+|+|+.+....|. .|+..+.+.|.|+.+ . +.+
T Consensus 265 ~~v~~~G~~~~~~~l~~aaDv--~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~~g~g~~~--~-----~~~ 335 (382)
T PLN02605 265 IPVKVRGFVTNMEEWMGACDC--IITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVDNGFGAFS--E-----SPK 335 (382)
T ss_pred CCeEEEeccccHHHHHHhCCE--EEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHHhCCceeec--C-----CHH
Confidence 46888899986 888888898 999999999999999999999998766665 699989989999754 2 789
Q ss_pred HHHHHHHHHhcCcch-HHHHHHHHHHHHHhccCCCcHHHHHHHHHH
Q 036520 421 GIAKALRLATVSEEG-EKLRVRAREAANTFNDKKLHDDYSVRFVEY 465 (473)
Q Consensus 421 ~l~~~i~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 465 (473)
+|.++|.++++ + ++.++++.+.+.......++...++.+.+.
T Consensus 336 ~la~~i~~ll~---~~~~~~~~m~~~~~~~~~~~a~~~i~~~l~~~ 378 (382)
T PLN02605 336 EIARIVAEWFG---DKSDELEAMSENALKLARPEAVFDIVHDLHEL 378 (382)
T ss_pred HHHHHHHHHHc---CCHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 99999999998 5 666666666666555444444444444443
No 42
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.50 E-value=2.7e-16 Score=135.98 Aligned_cols=139 Identities=20% Similarity=0.270 Sum_probs=98.1
Q ss_pred EEEEeecCcccCC-HHHHHHHHHHHhc--CCCCEEEEEcCCCCCCCccccCchhhhhhcC-CCceEEecccc-hHHHhhC
Q 036520 285 VVFVGFGSECKLS-KDQVYEIAYGLEL--SGLPFLWALRKPEWATDDVDALPLGFADTIR-GKGIVSIGWAP-QLEILAH 359 (473)
Q Consensus 285 ~V~vs~Gs~~~~~-~~~~~~~~~al~~--~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~-~~nv~~~~~~p-q~~ll~~ 359 (473)
+|+|+.||..... .+.+..+...+.. ...+++++++..... ..... ... ..|+.+.+|.+ ..+++..
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~~~~----~~~~~----~~~~~~~v~~~~~~~~m~~~m~~ 72 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKNNYE----ELKIK----VENFNPNVKVFGFVDNMAELMAA 72 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTCECH----HHCCC----HCCTTCCCEEECSSSSHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCCcHH----HHHHH----HhccCCcEEEEechhhHHHHHHH
Confidence 5899999876421 1122223333322 257888888765211 00000 001 15899999999 6999999
Q ss_pred CCcceeeeccCchhHHHHHhhCCceecccccc----ccccceeeeeecceEEEEecCCCCCcCHHHHHHHHHHHhcCcch
Q 036520 360 PSIGTSLFHAGWGSVIETLQFGHSLVVLPLII----DQPLNARLLVDKDLAVQVERKDDGSFTRDGIAKALRLATVSEEG 435 (473)
Q Consensus 360 ~~~~~~ItHGG~~s~~eal~~GvP~l~~P~~~----DQ~~na~~v~~~G~G~~l~~~~~~~~t~~~l~~~i~~ll~~~~~ 435 (473)
+++ +|||||.||++|++++|+|+|++|... +|..||..+++.|.|..+... ..+.+.|.++|.+++. +
T Consensus 73 aDl--vIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~g~~~~~~~~---~~~~~~L~~~i~~l~~---~ 144 (167)
T PF04101_consen 73 ADL--VISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKKGAAIMLDES---ELNPEELAEAIEELLS---D 144 (167)
T ss_dssp HSE--EEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHCCCCCCSECC---C-SCCCHHHHHHCHCC---C
T ss_pred cCE--EEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHcCCccccCcc---cCCHHHHHHHHHHHHc---C
Confidence 998 999999999999999999999999988 999999999999999999887 7789999999999999 5
Q ss_pred HHHH
Q 036520 436 EKLR 439 (473)
Q Consensus 436 ~~~~ 439 (473)
+..+
T Consensus 145 ~~~~ 148 (167)
T PF04101_consen 145 PEKL 148 (167)
T ss_dssp HH-S
T ss_pred cHHH
Confidence 5543
No 43
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.47 E-value=9.7e-11 Score=114.23 Aligned_cols=337 Identities=13% Similarity=0.053 Sum_probs=179.3
Q ss_pred ccChHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCcccCCCeEEEEecCCccccccccCCCCCCCccCCCCChhhH
Q 036520 15 FGHLMPFFQLSIALAKSGVKVSFISTPKNIQRLPKPAPESEVAALINFVEFPLPASAALDDKLLLPEGAEATVDIPSENI 94 (473)
Q Consensus 15 ~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 94 (473)
.|+...+..++++|+++||+|++++.......... ...+.+..+..+.. .. ....
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~------~~--------~~~~---- 68 (364)
T cd03814 14 NGVVRTLQRLVEHLRARGHEVLVIAPGPFRESEGP-------ARVVPVPSVPLPGY------PE--------IRLA---- 68 (364)
T ss_pred cceehHHHHHHHHHHHCCCEEEEEeCCchhhccCC-------CCceeecccccCcc------cc--------eEec----
Confidence 69999999999999999999999997653321111 01122211111000 00 0000
Q ss_pred HHHHHHHhhhhhHHHHHHHhCCCcEEEEcCCc---chHHHHHHHcCCCeEEEecchhHHHHHHhchhhhhcCCCCCCCCC
Q 036520 95 QYLKIAYDLLQHPFKQFVAQQSVDWIIVDVMS---HWAGKIAQEYHVPLLLFSAFSAAAFQFIANPECLVGDGQKRVRPS 171 (473)
Q Consensus 95 ~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~---~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (473)
......+...+++.+||+|++.... ..+..++++.++|++............ .
T Consensus 69 -------~~~~~~~~~~~~~~~pdii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~---------------- 124 (364)
T cd03814 69 -------LPPRRRVRRLLDAFAPDVVHIATPGPLGLAALRAARRLGIPVVTSYHTDFPEYLR-Y---------------- 124 (364)
T ss_pred -------ccchhhHHHHHHhcCCCEEEEeccchhhHHHHHHHHHcCCCEEEEEecChHHHhh-h----------------
Confidence 0012335566688899999876432 345577889999988754432211000 0
Q ss_pred CccccCCCccccCCCccccccccccccccccccCCCCchhhHHHHHHhhccccEEEEcCCchhhhHHHHHHHhhcCCCeE
Q 036520 172 AESLTSVPEWVDFPSSVALRTFDAIGMHHGFYGMNASGITDAHRTAEILHSCQAMAIRSCPEFEGEYLNLLEKLTGKPVI 251 (473)
Q Consensus 172 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~~~~~~ 251 (473)
+.. .+. . . .............+.+++.+....+ ........++.
T Consensus 125 ---------~~~-------------~~~----~----~-~~~~~~~~~~~~~d~i~~~s~~~~~-----~~~~~~~~~~~ 168 (364)
T cd03814 125 ---------YGL-------------GPL----S----W-LAWAYLRWFHNRADRVLVPSPSLAD-----ELRARGFRRVR 168 (364)
T ss_pred ---------ccc-------------chH----h----H-hhHHHHHHHHHhCCEEEeCCHHHHH-----HHhccCCCcee
Confidence 000 000 0 0 0011122334567777777665433 12222223344
Q ss_pred EeeccCCCCCCCCCCCCchhhhhccccCCCCCcEEEEeecCccc-CCHHHHHHHHHHHhcC-CCCEEEEEcCCCCCCCcc
Q 036520 252 PVGLLTPEPNSAKGRDHQISKIFQWLDEQKPRSVVFVGFGSECK-LSKDQVYEIAYGLELS-GLPFLWALRKPEWATDDV 329 (473)
Q Consensus 252 ~vGp~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~-~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~ 329 (473)
.+.+-......... .........+- . .+..+++..|+... -..+.+..++..+... +..++++-.+....
T Consensus 169 ~~~~g~~~~~~~~~-~~~~~~~~~~~-~--~~~~~i~~~G~~~~~k~~~~~i~~~~~l~~~~~~~l~i~G~~~~~~---- 240 (364)
T cd03814 169 LWPRGVDTELFHPR-RRDEALRARLG-P--PDRPVLLYVGRLAPEKNLEALLDADLPLRRRPPVRLVIVGDGPARA---- 240 (364)
T ss_pred ecCCCccccccCcc-cccHHHHHHhC-C--CCCeEEEEEeccccccCHHHHHHHHHHhhhcCCceEEEEeCCchHH----
Confidence 44322111100000 00111111221 1 22356667777653 2234444444444332 34444443322110
Q ss_pred ccCchhhhhhcCCCceEEecccchH---HHhhCCCcceeeeccC----chhHHHHHhhCCceeccccccccccceeeeee
Q 036520 330 DALPLGFADTIRGKGIVSIGWAPQL---EILAHPSIGTSLFHAG----WGSVIETLQFGHSLVVLPLIIDQPLNARLLVD 402 (473)
Q Consensus 330 ~~~p~~~~~~~~~~nv~~~~~~pq~---~ll~~~~~~~~ItHGG----~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~ 402 (473)
.+. ....|+.+.+|+++. +++..+++ +|+.+. .+++.||+++|+|+|+.+..+ +...+++
T Consensus 241 -----~~~--~~~~~v~~~g~~~~~~~~~~~~~~d~--~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~----~~~~i~~ 307 (364)
T cd03814 241 -----RLE--ARYPNVHFLGFLDGEELAAAYASADV--FVFPSRTETFGLVVLEAMASGLPVVAPDAGG----PADIVTD 307 (364)
T ss_pred -----HHh--ccCCcEEEEeccCHHHHHHHHHhCCE--EEECcccccCCcHHHHHHHcCCCEEEcCCCC----chhhhcC
Confidence 010 234589999999874 47888888 776654 378999999999999887553 4455666
Q ss_pred cceEEEEecCCCCCcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHhccCCCcHHHHHHHHHH
Q 036520 403 KDLAVQVERKDDGSFTRDGIAKALRLATVSEEGEKLRVRAREAANTFNDKKLHDDYSVRFVEY 465 (473)
Q Consensus 403 ~G~G~~l~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 465 (473)
.+.|...+.. +.+++.++|.+++. +++.++++.+-+....+.-+.+..++.+++.
T Consensus 308 ~~~g~~~~~~-----~~~~l~~~i~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (364)
T cd03814 308 GENGLLVEPG-----DAEAFAAALAALLA---DPELRRRMAARARAEAERRSWEAFLDNLLEA 362 (364)
T ss_pred CcceEEcCCC-----CHHHHHHHHHHHHc---CHHHHHHHHHHHHHHHhhcCHHHHHHHHHHh
Confidence 6888877654 77889999999999 7776666655555544444455556666554
No 44
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.47 E-value=2.2e-10 Score=115.93 Aligned_cols=154 Identities=14% Similarity=0.048 Sum_probs=94.1
Q ss_pred EEEEeecCcccCCHHHHHHHHHHHhcC-CCCEEEEEcCCCCCCCccccCchhhhhhcCCCceEEecccch---HHHhhCC
Q 036520 285 VVFVGFGSECKLSKDQVYEIAYGLELS-GLPFLWALRKPEWATDDVDALPLGFADTIRGKGIVSIGWAPQ---LEILAHP 360 (473)
Q Consensus 285 ~V~vs~Gs~~~~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq---~~ll~~~ 360 (473)
.+++..|+.. ....+..+++++++. +.+++++-.+. .-+.+++..+..++.+.+++++ ..+++.+
T Consensus 264 ~~i~~vGrl~--~~K~~~~li~a~~~~~~~~l~ivG~G~---------~~~~l~~~~~~~~V~f~G~v~~~ev~~~~~~a 332 (465)
T PLN02871 264 PLIVYVGRLG--AEKNLDFLKRVMERLPGARLAFVGDGP---------YREELEKMFAGTPTVFTGMLQGDELSQAYASG 332 (465)
T ss_pred eEEEEeCCCc--hhhhHHHHHHHHHhCCCcEEEEEeCCh---------HHHHHHHHhccCCeEEeccCCHHHHHHHHHHC
Confidence 5556668765 334455566777654 45555443221 1123444445568999999976 4578888
Q ss_pred Ccceeeecc---C-chhHHHHHhhCCceeccccccccccceeeeee---cceEEEEecCCCCCcCHHHHHHHHHHHhcCc
Q 036520 361 SIGTSLFHA---G-WGSVIETLQFGHSLVVLPLIIDQPLNARLLVD---KDLAVQVERKDDGSFTRDGIAKALRLATVSE 433 (473)
Q Consensus 361 ~~~~~ItHG---G-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~---~G~G~~l~~~~~~~~t~~~l~~~i~~ll~~~ 433 (473)
++ ||.-. | ..++.||+++|+|+|+....+ ....+++ .+.|..++.. +.++++++|.++++
T Consensus 333 Dv--~V~pS~~E~~g~~vlEAmA~G~PVI~s~~gg----~~eiv~~~~~~~~G~lv~~~-----d~~~la~~i~~ll~-- 399 (465)
T PLN02871 333 DV--FVMPSESETLGFVVLEAMASGVPVVAARAGG----IPDIIPPDQEGKTGFLYTPG-----DVDDCVEKLETLLA-- 399 (465)
T ss_pred CE--EEECCcccccCcHHHHHHHcCCCEEEcCCCC----cHhhhhcCCCCCceEEeCCC-----CHHHHHHHHHHHHh--
Confidence 88 77432 2 357999999999999876432 2333444 5778887654 78999999999998
Q ss_pred chHHHHHHHHHHHHHhccCCCcHHHHHHHH
Q 036520 434 EGEKLRVRAREAANTFNDKKLHDDYSVRFV 463 (473)
Q Consensus 434 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 463 (473)
+++.++++.+-+....+.-+-+..+..+.
T Consensus 400 -~~~~~~~~~~~a~~~~~~fsw~~~a~~l~ 428 (465)
T PLN02871 400 -DPELRERMGAAAREEVEKWDWRAATRKLR 428 (465)
T ss_pred -CHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 66655544443333222223344444443
No 45
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.46 E-value=3.5e-11 Score=118.19 Aligned_cols=359 Identities=14% Similarity=0.044 Sum_probs=188.3
Q ss_pred CCccChHHHHHHHHHHHh--CCCeEE---EEeCCCccccCCCCCCCcccCCCeEEEEecCCccccccccCCCCCCCccCC
Q 036520 13 SAFGHLMPFFQLSIALAK--SGVKVS---FISTPKNIQRLPKPAPESEVAALINFVEFPLPASAALDDKLLLPEGAEATV 87 (473)
Q Consensus 13 ~~~gH~~p~l~la~~L~~--~Gh~Vt---~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~l~~~~~~~~ 87 (473)
.++|-=.-.+.+|++|.+ .|++|. ++++....+ +. .+...- ++ ..++.+.-...
T Consensus 5 nghged~~a~ai~~~l~~~~~~~~v~~~p~vG~~~~~e---~~--------~ip~~g-~~---------~~~~sgg~~~~ 63 (396)
T TIGR03492 5 NGHGEDLIAARIAKALLQLSPDLNLEALPLVGEGRAYQ---NL--------GIPIIG-PT---------KELPSGGFSYQ 63 (396)
T ss_pred CCchHHHHHHHHHHHHHhhCCCCCeEEeCcccCCHHHh---hC--------CCceeC-CC---------CCCCCCCccCC
Confidence 355666678899999998 599999 998765433 11 111111 10 23332211111
Q ss_pred CCChhhHHHHHH-HHhhhhhHHHHHHHhC--CCcEEEEcCCcchHHHHHHHcCCCeEEEecchhHHHHHHhchhhhhcCC
Q 036520 88 DIPSENIQYLKI-AYDLLQHPFKQFVAQQ--SVDWIIVDVMSHWAGKIAQEYHVPLLLFSAFSAAAFQFIANPECLVGDG 164 (473)
Q Consensus 88 ~~~~~~~~~~~~-~~~~~~~~l~~ll~~~--~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~ 164 (473)
.....+..+.. ...... .-..+++++ +||+||+-.-.. +..+|...|+|++.+.+.-.-. .+
T Consensus 64 -~~~~~~~~~~~gl~~~~~-~~~~~~~~~~~~p~~v~~~Gg~v-~~~aA~~~~~p~~~~~~~esn~------~~------ 128 (396)
T TIGR03492 64 -SLRGLLRDLRAGLVGLTL-GQWRALRKWAKKGDLIVAVGDIV-PLLFAWLSGKPYAFVGTAKSDY------YW------ 128 (396)
T ss_pred -CHHHHHHHHHhhHHHHHH-HHHHHHHHHhhcCCEEEEECcHH-HHHHHHHcCCCceEEEeeccce------ee------
Confidence 11122222222 222222 234566777 999999875343 8889999999999865411000 00
Q ss_pred CCCCCCCCccccCCCccccCCCccccccccccccccccccCCC-CchhhHHHHHHhh-ccccEEEEcCCchhhhHHHHHH
Q 036520 165 QKRVRPSAESLTSVPEWVDFPSSVALRTFDAIGMHHGFYGMNA-SGITDAHRTAEIL-HSCQAMAIRSCPEFEGEYLNLL 242 (473)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~s~~~le~~~~~~~ 242 (473)
. ..+.+ + ..+++ .+.. ..+..+ ..+... +.++.+++ +++ ... +++
T Consensus 129 ----~-------~~~~~-~-----------~~~~~----~~~~G~~~~p~-e~n~l~~~~a~~v~~-~~~-~t~---~~l 175 (396)
T TIGR03492 129 ----E-------SGPRR-S-----------PSDEY----HRLEGSLYLPW-ERWLMRSRRCLAVFV-RDR-LTA---RDL 175 (396)
T ss_pred ----c-------CCCCC-c-----------cchhh----hccCCCccCHH-HHHHhhchhhCEEeC-CCH-HHH---HHH
Confidence 0 00000 0 00111 1110 011122 222233 33444443 332 222 233
Q ss_pred HhhcCCCeEEee-ccCCCCCCCCCCCCchhhhhccccCCCCCcEEEEeecCcccCCHHHHHHHHHHHhc----CCCCEEE
Q 036520 243 EKLTGKPVIPVG-LLTPEPNSAKGRDHQISKIFQWLDEQKPRSVVFVGFGSECKLSKDQVYEIAYGLEL----SGLPFLW 317 (473)
Q Consensus 243 ~~~~~~~~~~vG-p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~----~~~~~i~ 317 (473)
++. +.++.++| |+....... . .. . ++ +.+++|.+--||....-...+..+++++.. .+..|++
T Consensus 176 ~~~-g~k~~~vGnPv~d~l~~~---~---~~--~-l~--~~~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~~~~~~v~ 243 (396)
T TIGR03492 176 RRQ-GVRASYLGNPMMDGLEPP---E---RK--P-LL--TGRFRIALLPGSRPPEAYRNLKLLLRALEALPDSQPFVFLA 243 (396)
T ss_pred HHC-CCeEEEeCcCHHhcCccc---c---cc--c-cC--CCCCEEEEECCCCHHHHHccHHHHHHHHHHHhhCCCeEEEE
Confidence 322 34699999 554332211 0 00 1 22 223478887888754333334445555544 3567888
Q ss_pred EEcCCCCCCCccccCch-hhhh---------hcCCCceEEecccc-hHHHhhCCCcceeeeccCchhHHHHHhhCCceec
Q 036520 318 ALRKPEWATDDVDALPL-GFAD---------TIRGKGIVSIGWAP-QLEILAHPSIGTSLFHAGWGSVIETLQFGHSLVV 386 (473)
Q Consensus 318 ~~~~~~~~~~~~~~~p~-~~~~---------~~~~~nv~~~~~~p-q~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~ 386 (473)
.+.+......-...+.+ +... ....+++.+..+.. -.++++.+++ +|+-.|..| .|+++.|+|+|+
T Consensus 244 ~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~ADl--vI~rSGt~T-~E~a~lg~P~Il 320 (396)
T TIGR03492 244 AIVPSLSLEKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLGRGAFAEILHWADL--GIAMAGTAT-EQAVGLGKPVIQ 320 (396)
T ss_pred EeCCCCCHHHHHHHHHhcCceecCCccccchhhccCceEEEechHhHHHHHHhCCE--EEECcCHHH-HHHHHhCCCEEE
Confidence 77443211000000000 0000 01123455555553 3789999998 999999766 999999999999
Q ss_pred cccccccccceeeeeec----ceEEEEecCCCCCcCHHHHHHHHHHHhcCcchHHHHHHHH-HHHHHhccCCCcHHHHHH
Q 036520 387 LPLIIDQPLNARLLVDK----DLAVQVERKDDGSFTRDGIAKALRLATVSEEGEKLRVRAR-EAANTFNDKKLHDDYSVR 461 (473)
Q Consensus 387 ~P~~~DQ~~na~~v~~~----G~G~~l~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~ 461 (473)
+|.-..|. ||...++. |.++.+.. .+.+.|.+++.++++ |++.++++. ..++.+.+.+.+.+.++.
T Consensus 321 ip~~~~q~-na~~~~~~~~l~g~~~~l~~-----~~~~~l~~~l~~ll~---d~~~~~~~~~~~~~~lg~~~a~~~ia~~ 391 (396)
T TIGR03492 321 LPGKGPQF-TYGFAEAQSRLLGGSVFLAS-----KNPEQAAQVVRQLLA---DPELLERCRRNGQERMGPPGASARIAES 391 (396)
T ss_pred EeCCCCHH-HHHHHHhhHhhcCCEEecCC-----CCHHHHHHHHHHHHc---CHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 99877776 98877764 76766654 355999999999999 777766665 455555544444445444
Q ss_pred HHH
Q 036520 462 FVE 464 (473)
Q Consensus 462 ~~~ 464 (473)
+.+
T Consensus 392 i~~ 394 (396)
T TIGR03492 392 ILK 394 (396)
T ss_pred HHH
Confidence 443
No 46
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.37 E-value=1.4e-09 Score=105.65 Aligned_cols=158 Identities=15% Similarity=0.077 Sum_probs=92.7
Q ss_pred cEEEEeecCcccC-CHHHHHHHHHHHhcCCCCEEEEEcCCCCCCCccccCchhhhhhcCCCceEEecccch---HHHhhC
Q 036520 284 SVVFVGFGSECKL-SKDQVYEIAYGLELSGLPFLWALRKPEWATDDVDALPLGFADTIRGKGIVSIGWAPQ---LEILAH 359 (473)
Q Consensus 284 ~~V~vs~Gs~~~~-~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq---~~ll~~ 359 (473)
..+++..|++... ..+.+..++..+...+.+++++-.+.... ..........++.+.+++++ ..++..
T Consensus 191 ~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~l~i~G~~~~~~--------~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ 262 (359)
T cd03823 191 RLRFGFIGQLTPHKGVDLLLEAFKRLPRGDIELVIVGNGLELE--------EESYELEGDPRVEFLGAYPQEEIDDFYAE 262 (359)
T ss_pred ceEEEEEecCccccCHHHHHHHHHHHHhcCcEEEEEcCchhhh--------HHHHhhcCCCeEEEeCCCCHHHHHHHHHh
Confidence 3666777876542 23333333333333345555543322111 00000023458999999976 456888
Q ss_pred CCcceeee----ccCc-hhHHHHHhhCCceeccccccccccceeeeeecceEEEEecCCCCCcCHHHHHHHHHHHhcCcc
Q 036520 360 PSIGTSLF----HAGW-GSVIETLQFGHSLVVLPLIIDQPLNARLLVDKDLAVQVERKDDGSFTRDGIAKALRLATVSEE 434 (473)
Q Consensus 360 ~~~~~~It----HGG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~t~~~l~~~i~~ll~~~~ 434 (473)
+++ +|+ ..|. .++.||+++|+|+|+.+.. .+...+++.+.|..+... +.++++++|.++++
T Consensus 263 ad~--~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~~----~~~e~i~~~~~g~~~~~~-----d~~~l~~~i~~l~~--- 328 (359)
T cd03823 263 IDV--LVVPSIWPENFPLVIREALAAGVPVIASDIG----GMAELVRDGVNGLLFPPG-----DAEDLAAALERLID--- 328 (359)
T ss_pred CCE--EEEcCcccCCCChHHHHHHHCCCCEEECCCC----CHHHHhcCCCcEEEECCC-----CHHHHHHHHHHHHh---
Confidence 888 663 2344 5899999999999987643 345555655678877664 68999999999999
Q ss_pred hHHHHHHHHHHHHHhccCCCcHHHHHHHHHHH
Q 036520 435 GEKLRVRAREAANTFNDKKLHDDYSVRFVEYL 466 (473)
Q Consensus 435 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 466 (473)
+++.++.+.+-+...... +..++.+++.+
T Consensus 329 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 357 (359)
T cd03823 329 DPDLLERLRAGIEPPRSI---EDQAEEYLKLY 357 (359)
T ss_pred ChHHHHHHHHhHHHhhhH---HHHHHHHHHHh
Confidence 666555544433332211 44445555443
No 47
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.36 E-value=1.1e-11 Score=109.61 Aligned_cols=149 Identities=13% Similarity=0.085 Sum_probs=112.6
Q ss_pred cEEEEeecCcccCCHHHHHHHHHHHhcCCCCEEEEEcCCCCCCCccccCchhhhhhcCCCceEEecccc-hHHHhhCCCc
Q 036520 284 SVVFVGFGSECKLSKDQVYEIAYGLELSGLPFLWALRKPEWATDDVDALPLGFADTIRGKGIVSIGWAP-QLEILAHPSI 362 (473)
Q Consensus 284 ~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~p-q~~ll~~~~~ 362 (473)
.-|+|++|..- +....-+++..+.+.+..+.+++++.. +.+++-..-.-+.+|+....... -..|+..|++
T Consensus 159 r~ilI~lGGsD--pk~lt~kvl~~L~~~~~nl~iV~gs~~------p~l~~l~k~~~~~~~i~~~~~~~dma~LMke~d~ 230 (318)
T COG3980 159 RDILITLGGSD--PKNLTLKVLAELEQKNVNLHIVVGSSN------PTLKNLRKRAEKYPNINLYIDTNDMAELMKEADL 230 (318)
T ss_pred heEEEEccCCC--hhhhHHHHHHHhhccCeeEEEEecCCC------cchhHHHHHHhhCCCeeeEecchhHHHHHHhcch
Confidence 37999999652 344566688888888888888888542 22332222222456777765555 3679999999
Q ss_pred ceeeeccCchhHHHHHhhCCceeccccccccccceeeeeecceEEEEecCCCCCcCHHHHHHHHHHHhcCcchHHHHHHH
Q 036520 363 GTSLFHAGWGSVIETLQFGHSLVVLPLIIDQPLNARLLVDKDLAVQVERKDDGSFTRDGIAKALRLATVSEEGEKLRVRA 442 (473)
Q Consensus 363 ~~~ItHGG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~a 442 (473)
.|+-||. |+.|++.-|+|.+++|+...|--.|...+.+|+-..+.. .++.+.....+.++.. +...|.+.
T Consensus 231 --aI~AaGs-tlyEa~~lgvP~l~l~~a~NQ~~~a~~f~~lg~~~~l~~----~l~~~~~~~~~~~i~~---d~~~rk~l 300 (318)
T COG3980 231 --AISAAGS-TLYEALLLGVPSLVLPLAENQIATAKEFEALGIIKQLGY----HLKDLAKDYEILQIQK---DYARRKNL 300 (318)
T ss_pred --heeccch-HHHHHHHhcCCceEEeeeccHHHHHHHHHhcCchhhccC----CCchHHHHHHHHHhhh---CHHHhhhh
Confidence 9998876 899999999999999999999999999999999988876 4778888888888888 67777766
Q ss_pred HHHHHHhc
Q 036520 443 REAANTFN 450 (473)
Q Consensus 443 ~~~~~~~~ 450 (473)
-...+.+-
T Consensus 301 ~~~~~~i~ 308 (318)
T COG3980 301 SFGSKLIG 308 (318)
T ss_pred hhccceee
Confidence 65555443
No 48
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.33 E-value=3.3e-09 Score=104.11 Aligned_cols=111 Identities=11% Similarity=0.085 Sum_probs=74.1
Q ss_pred CceEEecccch-HHHhhCCCcceeee----ccCchhHHHHHhhCCceeccccccccccceeeeeecceEEEEecCCCCCc
Q 036520 343 KGIVSIGWAPQ-LEILAHPSIGTSLF----HAGWGSVIETLQFGHSLVVLPLIIDQPLNARLLVDKDLAVQVERKDDGSF 417 (473)
Q Consensus 343 ~nv~~~~~~pq-~~ll~~~~~~~~It----HGG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~ 417 (473)
+++.+.++.++ ..++..+++ +|. -|...++.||+++|+|+|+... ...+..+++-..|...+..
T Consensus 253 ~~v~~~g~~~~~~~~~~~~d~--~v~ps~~E~~~~~~~EAma~g~PvI~s~~----~~~~e~i~~~~~G~~~~~~----- 321 (371)
T cd04962 253 DDVLFLGKQDHVEELLSIADL--FLLPSEKESFGLAALEAMACGVPVVASNA----GGIPEVVKHGETGFLVDVG----- 321 (371)
T ss_pred ceEEEecCcccHHHHHHhcCE--EEeCCCcCCCccHHHHHHHcCCCEEEeCC----CCchhhhcCCCceEEcCCC-----
Confidence 47888888765 788888888 552 2334699999999999998644 3455555555667666543
Q ss_pred CHHHHHHHHHHHhcCcchHHHHHHHHHHHHHh-ccCCCcHHHHHHHHHHHH
Q 036520 418 TRDGIAKALRLATVSEEGEKLRVRAREAANTF-NDKKLHDDYSVRFVEYLK 467 (473)
Q Consensus 418 t~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~ 467 (473)
+.++++++|.++++ ++..++++.+-+... .+.-+.+..++.+.+..+
T Consensus 322 ~~~~l~~~i~~l~~---~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~y~ 369 (371)
T cd04962 322 DVEAMAEYALSLLE---DDELWQEFSRAARNRAAERFDSERIVPQYEALYR 369 (371)
T ss_pred CHHHHHHHHHHHHh---CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 78999999999998 665554444333332 333344555566665543
No 49
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.29 E-value=4.5e-13 Score=112.04 Aligned_cols=126 Identities=23% Similarity=0.287 Sum_probs=79.3
Q ss_pred EEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCcccCCCeEEEEecCCccccccccCCCCCCCccC
Q 036520 7 VVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPKNIQRLPKPAPESEVAALINFVEFPLPASAALDDKLLLPEGAEAT 86 (473)
Q Consensus 7 vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~l~~~~~~~ 86 (473)
|+|++.|+.||++|++.||++|++|||+|++++++.+.+.+++. ++++++++.+ . .++.... .
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~~--------Gl~~~~~~~~-~-------~~~~~~~-~ 63 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVEAA--------GLEFVPIPGD-S-------RLPRSLE-P 63 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHHT--------T-EEEESSSC-G-------GGGHHHH-H
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceeccccc--------CceEEEecCC-c-------CcCcccc-h
Confidence 78999999999999999999999999999999999999888664 8999998721 0 0000000 0
Q ss_pred CCCChhhHH---HHHHHHhhhhhHHHHHH----HhCCCcEEEEcCCcchHHHHHHHcCCCeEEEecchhH
Q 036520 87 VDIPSENIQ---YLKIAYDLLQHPFKQFV----AQQSVDWIIVDVMSHWAGKIAQEYHVPLLLFSAFSAA 149 (473)
Q Consensus 87 ~~~~~~~~~---~~~~~~~~~~~~l~~ll----~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~ 149 (473)
......... .+....+...+...+.+ ....+|+++++.....+..+|++++||++.....+.+
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~~ 133 (139)
T PF03033_consen 64 LANLRRLARLIRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPWF 133 (139)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGGG
T ss_pred hhhhhhHHHHhhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCcC
Confidence 000000000 11111111111111111 1135788888987888999999999999998776654
No 50
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.28 E-value=4.7e-09 Score=104.02 Aligned_cols=335 Identities=15% Similarity=0.087 Sum_probs=168.2
Q ss_pred ccChHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCcccCCCeEEEEecCCccccccccCCCCCCCccCCCCChhhH
Q 036520 15 FGHLMPFFQLSIALAKSGVKVSFISTPKNIQRLPKPAPESEVAALINFVEFPLPASAALDDKLLLPEGAEATVDIPSENI 94 (473)
Q Consensus 15 ~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 94 (473)
.|+-..+..|++.|+++||+|++++........... ....++.++.++.... .... .. ...
T Consensus 21 GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~------~~~~-----~~----~~~ 81 (398)
T cd03800 21 GGQNVYVLELARALARLGHEVDIFTRRIDDALPPIV----ELAPGVRVVRVPAGPA------EYLP-----KE----ELW 81 (398)
T ss_pred CceeehHHHHHHHHhccCceEEEEEecCCcccCCcc----ccccceEEEecccccc------cCCC-----hh----hcc
Confidence 478889999999999999999999864432221100 1224777777653211 0000 00 001
Q ss_pred HHHHHHHhhhhhHHHHHHHhC--CCcEEEEcCCc--chHHHHHHHcCCCeEEEecchhHHHHHHhchhhhhcCCCCCCCC
Q 036520 95 QYLKIAYDLLQHPFKQFVAQQ--SVDWIIVDVMS--HWAGKIAQEYHVPLLLFSAFSAAAFQFIANPECLVGDGQKRVRP 170 (473)
Q Consensus 95 ~~~~~~~~~~~~~l~~ll~~~--~pD~vI~D~~~--~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (473)
..+. .....+...++.. +||+|++.... ..+..+++.+++|+|......... .
T Consensus 82 ~~~~----~~~~~~~~~~~~~~~~~Div~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~----~--------------- 138 (398)
T cd03800 82 PYLD----EFADDLLRFLRREGGRPDLIHAHYWDSGLVALLLARRLGIPLVHTFHSLGAV----K--------------- 138 (398)
T ss_pred hhHH----HHHHHHHHHHHhcCCCccEEEEecCccchHHHHHHhhcCCceEEEeeccccc----C---------------
Confidence 1111 1222344455555 99999987432 445667899999988653311000 0
Q ss_pred CCccccCCCccccCCCccccccccccccccccccCCCCchhhHHHHHHhhccccEEEEcCCchhhhHHHHHHHhhc---C
Q 036520 171 SAESLTSVPEWVDFPSSVALRTFDAIGMHHGFYGMNASGITDAHRTAEILHSCQAMAIRSCPEFEGEYLNLLEKLT---G 247 (473)
Q Consensus 171 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~---~ 247 (473)
...... . ..+ . ...........+...+.+++.|....+. +.... .
T Consensus 139 -------~~~~~~-------~-----~~~-----~---~~~~~~~~~~~~~~ad~ii~~s~~~~~~-----~~~~~~~~~ 186 (398)
T cd03800 139 -------RRHLGA-------A-----DTY-----E---PARRIEAEERLLRAADRVIASTPQEAEE-----LYSLYGAYP 186 (398)
T ss_pred -------Cccccc-------c-----ccc-----c---hhhhhhHHHHHHhhCCEEEEcCHHHHHH-----HHHHccccc
Confidence 000000 0 000 0 0000011133456778887776543221 11111 1
Q ss_pred CCeEEeeccCCCCCCCCCCCCchhhhhccccCCCCCcEEEEeecCcccC-CHHHHHHHHHHHhc--CCCCEEEEEcCCCC
Q 036520 248 KPVIPVGLLTPEPNSAKGRDHQISKIFQWLDEQKPRSVVFVGFGSECKL-SKDQVYEIAYGLEL--SGLPFLWALRKPEW 324 (473)
Q Consensus 248 ~~~~~vGp~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~-~~~~~~~~~~al~~--~~~~~i~~~~~~~~ 324 (473)
.++..|.+-......... .........+... ++..+++..|+.... ..+.+...+..+.+ .+.+++++-++...
T Consensus 187 ~~~~vi~ng~~~~~~~~~-~~~~~~~~~~~~~--~~~~~i~~~gr~~~~k~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~ 263 (398)
T cd03800 187 RRIRVVPPGVDLERFTPY-GRAEARRARLLRD--PDKPRILAVGRLDPRKGIDTLIRAYAELPELRERANLVIVGGPRDD 263 (398)
T ss_pred cccEEECCCCCccceecc-cchhhHHHhhccC--CCCcEEEEEcccccccCHHHHHHHHHHHHHhCCCeEEEEEECCCCc
Confidence 224444332211100000 0000001111111 223666777876542 22333333333332 23455555443321
Q ss_pred CCCccccCchh---hhhhc-CCCceEEecccchHH---HhhCCCcceeeec----cCchhHHHHHhhCCceecccccccc
Q 036520 325 ATDDVDALPLG---FADTI-RGKGIVSIGWAPQLE---ILAHPSIGTSLFH----AGWGSVIETLQFGHSLVVLPLIIDQ 393 (473)
Q Consensus 325 ~~~~~~~~p~~---~~~~~-~~~nv~~~~~~pq~~---ll~~~~~~~~ItH----GG~~s~~eal~~GvP~l~~P~~~DQ 393 (473)
. ....... +.+.. ...|+.+.+|+|+.+ ++..+++ +|+. |-..++.||+++|+|+|+....
T Consensus 264 ~---~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adi--~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~--- 335 (398)
T cd03800 264 I---LAMDEEELRELARELGVIDRVDFPGRVSREDLPALYRAADV--FVNPALYEPFGLTALEAMACGLPVVATAVG--- 335 (398)
T ss_pred c---hhhhhHHHHHHHHhcCCCceEEEeccCCHHHHHHHHHhCCE--EEecccccccCcHHHHHHhcCCCEEECCCC---
Confidence 1 0000000 11111 235899999999855 5888888 7643 2236899999999999987643
Q ss_pred ccceeeeeecceEEEEecCCCCCcCHHHHHHHHHHHhcCcchHHHHHHHH
Q 036520 394 PLNARLLVDKDLAVQVERKDDGSFTRDGIAKALRLATVSEEGEKLRVRAR 443 (473)
Q Consensus 394 ~~na~~v~~~G~G~~l~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~a~ 443 (473)
.....+++.+.|..++.. +.++++++|.++++ +++.++++.
T Consensus 336 -~~~e~i~~~~~g~~~~~~-----~~~~l~~~i~~l~~---~~~~~~~~~ 376 (398)
T cd03800 336 -GPRDIVVDGVTGLLVDPR-----DPEALAAALRRLLT---DPALRRRLS 376 (398)
T ss_pred -CHHHHccCCCCeEEeCCC-----CHHHHHHHHHHHHh---CHHHHHHHH
Confidence 344456666788887654 78999999999998 555444333
No 51
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.28 E-value=6e-09 Score=102.29 Aligned_cols=146 Identities=16% Similarity=0.132 Sum_probs=86.3
Q ss_pred CcEEEEeecCccc-CCHHHHHHHHHHHhcC-CCCEEEEEcCCCCCCCccccCchhhhhhcCCCceEEecccchH---HHh
Q 036520 283 RSVVFVGFGSECK-LSKDQVYEIAYGLELS-GLPFLWALRKPEWATDDVDALPLGFADTIRGKGIVSIGWAPQL---EIL 357 (473)
Q Consensus 283 ~~~V~vs~Gs~~~-~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~---~ll 357 (473)
+..+++..|+... -..+.+...+..+.+. +.++++. +.+... ..+ .........+|+.+.+++++. +++
T Consensus 219 ~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~~~~~l~i~-G~~~~~----~~~-~~~~~~~~~~~v~~~g~~~~~~~~~~~ 292 (394)
T cd03794 219 DKFVVLYAGNIGRAQGLDTLLEAAALLKDRPDIRFLIV-GDGPEK----EEL-KELAKALGLDNVTFLGRVPKEELPELL 292 (394)
T ss_pred CcEEEEEecCcccccCHHHHHHHHHHHhhcCCeEEEEe-CCcccH----HHH-HHHHHHcCCCcEEEeCCCChHHHHHHH
Confidence 3467777787654 2234444444444333 4454443 322111 001 011112334689999999864 567
Q ss_pred hCCCcceeeeccC---------chhHHHHHhhCCceeccccccccccceeeeeecceEEEEecCCCCCcCHHHHHHHHHH
Q 036520 358 AHPSIGTSLFHAG---------WGSVIETLQFGHSLVVLPLIIDQPLNARLLVDKDLAVQVERKDDGSFTRDGIAKALRL 428 (473)
Q Consensus 358 ~~~~~~~~ItHGG---------~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~t~~~l~~~i~~ 428 (473)
..+++ +|.... -+++.||+++|+|+|+.+..+.+... .+.+.|..++.. +.++++++|.+
T Consensus 293 ~~~di--~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~~~----~~~~~g~~~~~~-----~~~~l~~~i~~ 361 (394)
T cd03794 293 AAADV--GLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAELV----EEAGAGLVVPPG-----DPEALAAAILE 361 (394)
T ss_pred HhhCe--eEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchhhh----ccCCcceEeCCC-----CHHHHHHHHHH
Confidence 88888 554322 23479999999999998876543322 222677777653 78999999999
Q ss_pred HhcCcchHHHHHHHHHHHHH
Q 036520 429 ATVSEEGEKLRVRAREAANT 448 (473)
Q Consensus 429 ll~~~~~~~~~~~a~~~~~~ 448 (473)
+++ +++.++++.+-+..
T Consensus 362 ~~~---~~~~~~~~~~~~~~ 378 (394)
T cd03794 362 LLD---DPEERAEMGENGRR 378 (394)
T ss_pred HHh---ChHHHHHHHHHHHH
Confidence 998 66665555444333
No 52
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.27 E-value=1.5e-08 Score=98.13 Aligned_cols=324 Identities=14% Similarity=0.083 Sum_probs=170.4
Q ss_pred EEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCcccCCCeEEEEecCCccccccccCCCCCCCcc
Q 036520 6 HVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPKNIQRLPKPAPESEVAALINFVEFPLPASAALDDKLLLPEGAEA 85 (473)
Q Consensus 6 ~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~l~~~~~~ 85 (473)
||++++....|+...+..++++|.++||+|++++......... ...++.+..++....
T Consensus 1 kIl~i~~~~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~--------------- 58 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKALRAAGYEVHVVAPPGDELEEL-------EALGVKVIPIPLDRR--------------- 58 (359)
T ss_pred CeeEEEecchhHHHHHHHHHHHHHhcCCeeEEEecCCCccccc-------ccCCceEEecccccc---------------
Confidence 4778777778899999999999999999999999765543211 113666666652110
Q ss_pred CCCCChhhHHHHHHHHhhhhhHHHHHHHhCCCcEEEEcCCcc--hHHHHHHHcCCCeEEEecchhHHHHHHhchhhhhcC
Q 036520 86 TVDIPSENIQYLKIAYDLLQHPFKQFVAQQSVDWIIVDVMSH--WAGKIAQEYHVPLLLFSAFSAAAFQFIANPECLVGD 163 (473)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~ 163 (473)
.... ...+. ....+.+++++.+||+|++..... .+..+++..+.|.+...........
T Consensus 59 -~~~~---~~~~~-----~~~~~~~~~~~~~~dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----------- 118 (359)
T cd03808 59 -GINP---FKDLK-----ALLRLYRLLRKERPDIVHTHTPKPGILGRLAARLAGVPKVIYTVHGLGFVF----------- 118 (359)
T ss_pred -ccCh---HhHHH-----HHHHHHHHHHhcCCCEEEEccccchhHHHHHHHHcCCCCEEEEecCcchhh-----------
Confidence 0000 00111 122456677888999999875432 3334455466665554331110000
Q ss_pred CCCCCCCCCccccCCCccccCCCccccccccccccccccccCCCCchhhHHHHHHhhccccEEEEcCCchhhhHHHHHHH
Q 036520 164 GQKRVRPSAESLTSVPEWVDFPSSVALRTFDAIGMHHGFYGMNASGITDAHRTAEILHSCQAMAIRSCPEFEGEYLNLLE 243 (473)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~ 243 (473)
... .+. ...+... ........+.+++.+....+ .+.
T Consensus 119 --------------~~~----------------~~~-------~~~~~~~--~~~~~~~~d~ii~~s~~~~~-----~~~ 154 (359)
T cd03808 119 --------------TSG----------------GLK-------RRLYLLL--ERLALRFTDKVIFQNEDDRD-----LAL 154 (359)
T ss_pred --------------ccc----------------hhH-------HHHHHHH--HHHHHhhccEEEEcCHHHHH-----HHH
Confidence 000 000 0000011 12233455777776654333 122
Q ss_pred hhcC---CCeEEeeccCCCCCCCCCCCCchhhhhccccC-CCCCcEEEEeecCcccC-CHHHHHHHHHHHhc--CCCCEE
Q 036520 244 KLTG---KPVIPVGLLTPEPNSAKGRDHQISKIFQWLDE-QKPRSVVFVGFGSECKL-SKDQVYEIAYGLEL--SGLPFL 316 (473)
Q Consensus 244 ~~~~---~~~~~vGp~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~V~vs~Gs~~~~-~~~~~~~~~~al~~--~~~~~i 316 (473)
+... .....+.|...+.... . .... ...+..+++..|+.... ..+.+.+.+..+.+ .+.+++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~---~--------~~~~~~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~ 223 (359)
T cd03808 155 KLGIIKKKKTVLIPGSGVDLDRF---S--------PSPEPIPEDDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLL 223 (359)
T ss_pred HhcCCCcCceEEecCCCCChhhc---C--------ccccccCCCCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEE
Confidence 2211 2233333333221111 0 0000 12234777778876542 23444444444443 234444
Q ss_pred EEEcCCCCCCCccccCchhhhhhcCCCceEEecccch-HHHhhCCCcceeeeccC----chhHHHHHhhCCceecccccc
Q 036520 317 WALRKPEWATDDVDALPLGFADTIRGKGIVSIGWAPQ-LEILAHPSIGTSLFHAG----WGSVIETLQFGHSLVVLPLII 391 (473)
Q Consensus 317 ~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq-~~ll~~~~~~~~ItHGG----~~s~~eal~~GvP~l~~P~~~ 391 (473)
++-.+.... .... . .........++.+.++..+ ..++..+++ +|.-.. .+++.||+++|+|+|+.+..
T Consensus 224 i~G~~~~~~--~~~~-~-~~~~~~~~~~v~~~g~~~~~~~~~~~adi--~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~- 296 (359)
T cd03808 224 LVGDGDEEN--PAAI-L-EIEKLGLEGRVEFLGFRDDVPELLAAADV--FVLPSYREGLPRVLLEAMAMGRPVIATDVP- 296 (359)
T ss_pred EEcCCCcch--hhHH-H-HHHhcCCcceEEEeeccccHHHHHHhccE--EEecCcccCcchHHHHHHHcCCCEEEecCC-
Confidence 443332111 0000 0 0111223457888887544 788888888 665432 47899999999999986543
Q ss_pred ccccceeeeeecceEEEEecCCCCCcCHHHHHHHHHHHhcCcchHHHHHHHHH
Q 036520 392 DQPLNARLLVDKDLAVQVERKDDGSFTRDGIAKALRLATVSEEGEKLRVRARE 444 (473)
Q Consensus 392 DQ~~na~~v~~~G~G~~l~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~a~~ 444 (473)
.+...+++.+.|...+.. +.+++.++|.+++. +++.+++..+
T Consensus 297 ---~~~~~i~~~~~g~~~~~~-----~~~~~~~~i~~l~~---~~~~~~~~~~ 338 (359)
T cd03808 297 ---GCREAVIDGVNGFLVPPG-----DAEALADAIERLIE---DPELRARMGQ 338 (359)
T ss_pred ---CchhhhhcCcceEEECCC-----CHHHHHHHHHHHHh---CHHHHHHHHH
Confidence 334455556778777654 78999999999998 6655544433
No 53
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.27 E-value=8.6e-09 Score=100.65 Aligned_cols=135 Identities=16% Similarity=0.136 Sum_probs=81.8
Q ss_pred cEEEEeecCcccC-CHHHHHHHHHHHhc--CCCCEEEEEcCCCCCCCccccCchhhhhhcCCCceEEecccchH---HHh
Q 036520 284 SVVFVGFGSECKL-SKDQVYEIAYGLEL--SGLPFLWALRKPEWATDDVDALPLGFADTIRGKGIVSIGWAPQL---EIL 357 (473)
Q Consensus 284 ~~V~vs~Gs~~~~-~~~~~~~~~~al~~--~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~---~ll 357 (473)
..+++..|+.... ..+.+..++..+.. .+.++++.-.+.. ...+-....+....+|+.+.+++|+. .++
T Consensus 202 ~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~~~~~l~i~G~~~~-----~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ 276 (374)
T cd03817 202 EPVLLYVGRLAKEKNIDFLIRAFARLLKEEPDVKLVIVGDGPE-----REELEELARELGLADRVIFTGFVPREELPDYY 276 (374)
T ss_pred CeEEEEEeeeecccCHHHHHHHHHHHHHhCCCeEEEEEeCCch-----HHHHHHHHHHcCCCCcEEEeccCChHHHHHHH
Confidence 3566667876542 23444444444443 3344444433221 01011100001124589999999874 568
Q ss_pred hCCCcceeeec----cCchhHHHHHhhCCceeccccccccccceeeeeecceEEEEecCCCCCcCHHHHHHHHHHHhcCc
Q 036520 358 AHPSIGTSLFH----AGWGSVIETLQFGHSLVVLPLIIDQPLNARLLVDKDLAVQVERKDDGSFTRDGIAKALRLATVSE 433 (473)
Q Consensus 358 ~~~~~~~~ItH----GG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~t~~~l~~~i~~ll~~~ 433 (473)
..+++ +|.- |...++.||+++|+|+|+... ...+..+++.+.|..++.. +. ++.+++.++++
T Consensus 277 ~~ad~--~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~----~~~~~~i~~~~~g~~~~~~-----~~-~~~~~i~~l~~-- 342 (374)
T cd03817 277 KAADL--FVFASTTETQGLVLLEAMAAGLPVVAVDA----PGLPDLVADGENGFLFPPG-----DE-ALAEALLRLLQ-- 342 (374)
T ss_pred HHcCE--EEecccccCcChHHHHHHHcCCcEEEeCC----CChhhheecCceeEEeCCC-----CH-HHHHHHHHHHh--
Confidence 88888 6633 334789999999999998654 3455666776788888764 22 89999999998
Q ss_pred chHHH
Q 036520 434 EGEKL 438 (473)
Q Consensus 434 ~~~~~ 438 (473)
+++.
T Consensus 343 -~~~~ 346 (374)
T cd03817 343 -DPEL 346 (374)
T ss_pred -ChHH
Confidence 5553
No 54
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.24 E-value=1.3e-08 Score=98.88 Aligned_cols=341 Identities=14% Similarity=0.065 Sum_probs=177.1
Q ss_pred ccChHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCcccCCCeEEEEecCCccccccccCCCCCCCccCCCCChhhH
Q 036520 15 FGHLMPFFQLSIALAKSGVKVSFISTPKNIQRLPKPAPESEVAALINFVEFPLPASAALDDKLLLPEGAEATVDIPSENI 94 (473)
Q Consensus 15 ~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 94 (473)
.|+...+..+++.|.+.||+|++++........... ....... .. ......
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~~---------~~~~~~~----------~~------~~~~~~---- 64 (374)
T cd03801 14 GGAERHVLELARALAARGHEVTVLTPGDGGLPDEEE---------VGGIVVV----------RP------PPLLRV---- 64 (374)
T ss_pred CcHhHHHHHHHHHHHhcCceEEEEecCCCCCCceee---------ecCccee----------cC------Cccccc----
Confidence 688999999999999999999999976543322110 0000000 00 000000
Q ss_pred HHHHHHHhhhhhHHHHHHHhCCCcEEEEcCCcchHH--HHHHHcCCCeEEEecchhHHHHHHhchhhhhcCCCCCCCCCC
Q 036520 95 QYLKIAYDLLQHPFKQFVAQQSVDWIIVDVMSHWAG--KIAQEYHVPLLLFSAFSAAAFQFIANPECLVGDGQKRVRPSA 172 (473)
Q Consensus 95 ~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~~~~--~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (473)
............+..+++..+||+|++........ ..+...++|.+...........
T Consensus 65 -~~~~~~~~~~~~~~~~~~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~-------------------- 123 (374)
T cd03801 65 -RRLLLLLLLALRLRRLLRRERFDVVHAHDWLALLAAALAARLLGIPLVLTVHGLEFGRP-------------------- 123 (374)
T ss_pred -chhHHHHHHHHHHHHHhhhcCCcEEEEechhHHHHHHHHHHhcCCcEEEEeccchhhcc--------------------
Confidence 00111111234456677788999999886554333 4788999998876543221100
Q ss_pred ccccCCCccccCCCccccccccccccccccccCCCCchhhHHHHHHhhccccEEEEcCCchhhhHHHHHHHhhcCC---C
Q 036520 173 ESLTSVPEWVDFPSSVALRTFDAIGMHHGFYGMNASGITDAHRTAEILHSCQAMAIRSCPEFEGEYLNLLEKLTGK---P 249 (473)
Q Consensus 173 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~~~---~ 249 (473)
.. . ... ................+.+++.+....+ .+....+. +
T Consensus 124 -------~~-----~--------~~~---------~~~~~~~~~~~~~~~~d~~i~~s~~~~~-----~~~~~~~~~~~~ 169 (374)
T cd03801 124 -------GN-----E--------LGL---------LLKLARALERRALRRADRIIAVSEATRE-----ELRELGGVPPEK 169 (374)
T ss_pred -------cc-----c--------hhH---------HHHHHHHHHHHHHHhCCEEEEecHHHHH-----HHHhcCCCCCCc
Confidence 00 0 000 0001111223445667777777654333 23333332 4
Q ss_pred eEEeeccCCCCCCCCCCCCchhhhhccccCCCCCcEEEEeecCcccCCHHHHHHHHHHHh---cC--CCCEEEEEcCCCC
Q 036520 250 VIPVGLLTPEPNSAKGRDHQISKIFQWLDEQKPRSVVFVGFGSECKLSKDQVYEIAYGLE---LS--GLPFLWALRKPEW 324 (473)
Q Consensus 250 ~~~vGp~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~---~~--~~~~i~~~~~~~~ 324 (473)
+..+..-....... ... .....-.. ...+..+++.+|+... ...+..+++++. .. +.++++. +.+..
T Consensus 170 ~~~i~~~~~~~~~~---~~~-~~~~~~~~-~~~~~~~i~~~g~~~~--~k~~~~~i~~~~~~~~~~~~~~l~i~-G~~~~ 241 (374)
T cd03801 170 ITVIPNGVDTERFR---PAP-RAARRRLG-IPEDEPVILFVGRLVP--RKGVDLLLEALAKLRKEYPDVRLVIV-GDGPL 241 (374)
T ss_pred EEEecCcccccccC---ccc-hHHHhhcC-CcCCCeEEEEecchhh--hcCHHHHHHHHHHHhhhcCCeEEEEE-eCcHH
Confidence 55554322111110 000 00111111 1223366677787653 333344444443 32 2334333 22110
Q ss_pred CCCccccCchhhhhhcCCCceEEecccch---HHHhhCCCcceeee----ccCchhHHHHHhhCCceeccccccccccce
Q 036520 325 ATDDVDALPLGFADTIRGKGIVSIGWAPQ---LEILAHPSIGTSLF----HAGWGSVIETLQFGHSLVVLPLIIDQPLNA 397 (473)
Q Consensus 325 ~~~~~~~~p~~~~~~~~~~nv~~~~~~pq---~~ll~~~~~~~~It----HGG~~s~~eal~~GvP~l~~P~~~DQ~~na 397 (473)
...+-....+.....++.+.+++++ ..++..+++ +|. -|..+++.||+++|+|+|+.+. ...+
T Consensus 242 ----~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~ 311 (374)
T cd03801 242 ----REELEALAAELGLGDRVTFLGFVPDEDLPALYAAADV--FVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIP 311 (374)
T ss_pred ----HHHHHHHHHHhCCCcceEEEeccChhhHHHHHHhcCE--EEecchhccccchHHHHHHcCCcEEEeCC----CChh
Confidence 0000000001123458999999975 567888888 663 2456799999999999998765 3445
Q ss_pred eeeeecceEEEEecCCCCCcCHHHHHHHHHHHhcCcchHHHHHHHHHHHH-HhccCCCcHHHHHHHHHH
Q 036520 398 RLLVDKDLAVQVERKDDGSFTRDGIAKALRLATVSEEGEKLRVRAREAAN-TFNDKKLHDDYSVRFVEY 465 (473)
Q Consensus 398 ~~v~~~G~G~~l~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~ 465 (473)
..+++.+.|...+.. +.+++.++|.++++ +++.++++.+-+. ...+.-+.+..++.+++.
T Consensus 312 ~~~~~~~~g~~~~~~-----~~~~l~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (374)
T cd03801 312 EVVEDGETGLLVPPG-----DPEALAEAILRLLD---DPELRRRLGEAARERVAERFSWDRVAARTEEV 372 (374)
T ss_pred HHhcCCcceEEeCCC-----CHHHHHHHHHHHHc---ChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHh
Confidence 555556778777654 68999999999998 6655444443333 344444455555666554
No 55
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.21 E-value=2.2e-08 Score=96.47 Aligned_cols=95 Identities=18% Similarity=0.225 Sum_probs=65.9
Q ss_pred CCceEEecccch-HHHhhCCCcceeeecc----CchhHHHHHhhCCceeccccccccccceeeeeecc-eEEEEecCCCC
Q 036520 342 GKGIVSIGWAPQ-LEILAHPSIGTSLFHA----GWGSVIETLQFGHSLVVLPLIIDQPLNARLLVDKD-LAVQVERKDDG 415 (473)
Q Consensus 342 ~~nv~~~~~~pq-~~ll~~~~~~~~ItHG----G~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G-~G~~l~~~~~~ 415 (473)
..++.+.++... ..++..+++ +|.-. ..+++.||+++|+|+|+.+..+.+. .+...| .|...+..
T Consensus 234 ~~~v~~~g~~~~~~~~~~~ad~--~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~----~~~~~~~~g~~~~~~--- 304 (348)
T cd03820 234 EDRVILLGFTKNIEEYYAKASI--FVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGPS----EIIEDGVNGLLVPNG--- 304 (348)
T ss_pred CCeEEEcCCcchHHHHHHhCCE--EEeCccccccCHHHHHHHHcCCCEEEecCCCchH----hhhccCcceEEeCCC---
Confidence 346777777433 788888888 66543 2478999999999999876544322 233334 77777654
Q ss_pred CcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHhc
Q 036520 416 SFTRDGIAKALRLATVSEEGEKLRVRAREAANTFN 450 (473)
Q Consensus 416 ~~t~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~ 450 (473)
+.++++++|.++++ |++.++++.+-+....
T Consensus 305 --~~~~~~~~i~~ll~---~~~~~~~~~~~~~~~~ 334 (348)
T cd03820 305 --DVEALAEALLRLME---DEELRKRMGANARESA 334 (348)
T ss_pred --CHHHHHHHHHHHHc---CHHHHHHHHHHHHHHH
Confidence 68999999999999 7777666655544443
No 56
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=99.19 E-value=1.6e-07 Score=93.46 Aligned_cols=112 Identities=12% Similarity=0.055 Sum_probs=74.4
Q ss_pred CCceEEecccch---HHHhhCCCcceeee---ccC-chhHHHHHhhCCceeccccccccccceeeeeecceEEEEecCCC
Q 036520 342 GKGIVSIGWAPQ---LEILAHPSIGTSLF---HAG-WGSVIETLQFGHSLVVLPLIIDQPLNARLLVDKDLAVQVERKDD 414 (473)
Q Consensus 342 ~~nv~~~~~~pq---~~ll~~~~~~~~It---HGG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~ 414 (473)
.+++.+.++++. .++|+.+++ +|. +.| ..++.||+++|+|+|+.... .....+++.+.|..++..
T Consensus 282 ~~~v~~~g~~~~~~~~~~l~~ad~--~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~----~~~e~i~~~~~g~~~~~~-- 353 (405)
T TIGR03449 282 ADRVRFLPPRPPEELVHVYRAADV--VAVPSYNESFGLVAMEAQACGTPVVAARVG----GLPVAVADGETGLLVDGH-- 353 (405)
T ss_pred CceEEECCCCCHHHHHHHHHhCCE--EEECCCCCCcChHHHHHHHcCCCEEEecCC----CcHhhhccCCceEECCCC--
Confidence 358999999986 467888988 553 233 35899999999999986543 333445555677777653
Q ss_pred CCcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHH
Q 036520 415 GSFTRDGIAKALRLATVSEEGEKLRVRAREAANTFNDKKLHDDYSVRFVEYLK 467 (473)
Q Consensus 415 ~~~t~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (473)
+.++++++|.++++ +++.++++.+-+....+.-+-+..++.+++...
T Consensus 354 ---d~~~la~~i~~~l~---~~~~~~~~~~~~~~~~~~fsw~~~~~~~~~~y~ 400 (405)
T TIGR03449 354 ---DPADWADALARLLD---DPRTRIRMGAAAVEHAAGFSWAATADGLLSSYR 400 (405)
T ss_pred ---CHHHHHHHHHHHHh---CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 78999999999998 555554444333333223344555556555443
No 57
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.18 E-value=4.9e-08 Score=96.85 Aligned_cols=91 Identities=18% Similarity=0.105 Sum_probs=64.6
Q ss_pred CCceEEecccchH---HHhhCCCcceeeec-cCc-hhHHHHHhhCCceeccccccccccceeeeeecceEEEEecCCCCC
Q 036520 342 GKGIVSIGWAPQL---EILAHPSIGTSLFH-AGW-GSVIETLQFGHSLVVLPLIIDQPLNARLLVDKDLAVQVERKDDGS 416 (473)
Q Consensus 342 ~~nv~~~~~~pq~---~ll~~~~~~~~ItH-GG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~ 416 (473)
.+++.+.+++|+. .+|..+++-++.+. .|. .++.||+++|+|+|+... ......+.+-..|..++..
T Consensus 280 ~~~V~f~G~v~~~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~PVIas~~----~g~~e~i~~~~~G~lv~~~---- 351 (396)
T cd03818 280 LSRVHFLGRVPYDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGCLVVGSDT----APVREVITDGENGLLVDFF---- 351 (396)
T ss_pred cceEEEeCCCCHHHHHHHHHhCcEEEEcCcccccchHHHHHHHCCCCEEEcCC----CCchhhcccCCceEEcCCC----
Confidence 4689999999975 46778888333232 232 489999999999998643 3455555555568777654
Q ss_pred cCHHHHHHHHHHHhcCcchHHHHHHHHH
Q 036520 417 FTRDGIAKALRLATVSEEGEKLRVRARE 444 (473)
Q Consensus 417 ~t~~~l~~~i~~ll~~~~~~~~~~~a~~ 444 (473)
+.++++++|.++++ +++.++++.+
T Consensus 352 -d~~~la~~i~~ll~---~~~~~~~l~~ 375 (396)
T cd03818 352 -DPDALAAAVIELLD---DPARRARLRR 375 (396)
T ss_pred -CHHHHHHHHHHHHh---CHHHHHHHHH
Confidence 78999999999999 6655444433
No 58
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.17 E-value=3.1e-07 Score=91.63 Aligned_cols=116 Identities=15% Similarity=0.119 Sum_probs=75.0
Q ss_pred CceEEecccch---HHHhhCCCcceeeeccCc------hhHHHHHhhCCceeccccccccccceeeeeecceEEEEecCC
Q 036520 343 KGIVSIGWAPQ---LEILAHPSIGTSLFHAGW------GSVIETLQFGHSLVVLPLIIDQPLNARLLVDKDLAVQVERKD 413 (473)
Q Consensus 343 ~nv~~~~~~pq---~~ll~~~~~~~~ItHGG~------~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~ 413 (473)
+|+.+.+|+|+ ..+++.+++.++.+..+. +.+.|++++|+|+|+....+.. ....++ +.|+.++..
T Consensus 284 ~~v~f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~~--~~~~i~--~~G~~~~~~- 358 (412)
T PRK10307 284 PNVHFLPLQPYDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGTE--LGQLVE--GIGVCVEPE- 358 (412)
T ss_pred CceEEeCCCCHHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCch--HHHHHh--CCcEEeCCC-
Confidence 48999999987 457888998555555332 2468999999999998754311 111222 678777654
Q ss_pred CCCcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHH-hccCCCcHHHHHHHHHHHHHhc
Q 036520 414 DGSFTRDGIAKALRLATVSEEGEKLRVRAREAANT-FNDKKLHDDYSVRFVEYLKINV 470 (473)
Q Consensus 414 ~~~~t~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 470 (473)
+.++++++|.++++ +++.++++.+-+.. ..+.=+.+..++.+++.+.+..
T Consensus 359 ----d~~~la~~i~~l~~---~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~ 409 (412)
T PRK10307 359 ----SVEALVAAIAALAR---QALLRPKLGTVAREYAERTLDKENVLRQFIADIRGLV 409 (412)
T ss_pred ----CHHHHHHHHHHHHh---CHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHh
Confidence 78999999999998 55554444333333 2223344566666666665543
No 59
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.17 E-value=8.7e-08 Score=93.30 Aligned_cols=348 Identities=14% Similarity=0.022 Sum_probs=175.3
Q ss_pred CccChHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCcccCCCeEEEEecCCccccccccCCCCCCCccCCCCChhh
Q 036520 14 AFGHLMPFFQLSIALAKSGVKVSFISTPKNIQRLPKPAPESEVAALINFVEFPLPASAALDDKLLLPEGAEATVDIPSEN 93 (473)
Q Consensus 14 ~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 93 (473)
..|+-..+..+++.|.+.||+|++++............ ........ .............
T Consensus 13 ~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~------~~~~~~~~------------~~~~~~~~~~~~~--- 71 (377)
T cd03798 13 NGGGGIFVKELARALAKRGVEVTVLAPGPWGPKLLDLL------KGRLVGVE------------RLPVLLPVVPLLK--- 71 (377)
T ss_pred CchHHHHHHHHHHHHHHCCCceEEEecCCCCCCchhhc------cccccccc------------ccccCcchhhccc---
Confidence 36888899999999999999999999765433222110 00000000 0000000000000
Q ss_pred HHHHHHHHhhhhhHHHHHHH--hCCCcEEEEcCCcc---hHHHHHHHcCCCeEEEecchhHHHHHHhchhhhhcCCCCCC
Q 036520 94 IQYLKIAYDLLQHPFKQFVA--QQSVDWIIVDVMSH---WAGKIAQEYHVPLLLFSAFSAAAFQFIANPECLVGDGQKRV 168 (473)
Q Consensus 94 ~~~~~~~~~~~~~~l~~ll~--~~~pD~vI~D~~~~---~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (473)
...........+..+++ ..+||+|++..... .+..+++..++|++.........
T Consensus 72 ---~~~~~~~~~~~~~~~l~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~------------------ 130 (377)
T cd03798 72 ---GPLLYLLAARALLKLLKLKRFRPDLIHAHFAYPDGFAAALLKRKLGIPLVVTLHGSDVN------------------ 130 (377)
T ss_pred ---cchhHHHHHHHHHHHHhcccCCCCEEEEeccchHHHHHHHHHHhcCCCEEEEeecchhc------------------
Confidence 00111123345667777 88999999885332 34456778888988754422110
Q ss_pred CCCCccccCCCccccCCCccccccccccccccccccCCCCchhhHHHHHHhhccccEEEEcCCchhhhHHHHHHHhh--c
Q 036520 169 RPSAESLTSVPEWVDFPSSVALRTFDAIGMHHGFYGMNASGITDAHRTAEILHSCQAMAIRSCPEFEGEYLNLLEKL--T 246 (473)
Q Consensus 169 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~--~ 246 (473)
.... ...............+.+++.+....+ .+.+. .
T Consensus 131 -----------~~~~-------------------------~~~~~~~~~~~~~~~d~ii~~s~~~~~-----~~~~~~~~ 169 (377)
T cd03798 131 -----------LLPR-------------------------KRLLRALLRRALRRADAVIAVSEALAD-----ELKALGID 169 (377)
T ss_pred -----------ccCc-------------------------hhhHHHHHHHHHhcCCeEEeCCHHHHH-----HHHHhcCC
Confidence 0000 000111223445667777776643322 22222 2
Q ss_pred CCCeEEeeccCCCCCCCCCCCCchhhhhccccCCCCCcEEEEeecCcccC-CHHHHHHHHHHHhcCCCCEEEEEcCCCCC
Q 036520 247 GKPVIPVGLLTPEPNSAKGRDHQISKIFQWLDEQKPRSVVFVGFGSECKL-SKDQVYEIAYGLELSGLPFLWALRKPEWA 325 (473)
Q Consensus 247 ~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~-~~~~~~~~~~al~~~~~~~i~~~~~~~~~ 325 (473)
..++..++......... ......... +.. ..+..+++..|+.... ..+.+..+++.+...+.++.+.+.+....
T Consensus 170 ~~~~~~i~~~~~~~~~~---~~~~~~~~~-~~~-~~~~~~i~~~g~~~~~k~~~~li~~~~~~~~~~~~~~l~i~g~~~~ 244 (377)
T cd03798 170 PEKVTVIPNGVDTERFS---PADRAEARK-LGL-PEDKKVILFVGRLVPRKGIDYLIEALARLLKKRPDVHLVIVGDGPL 244 (377)
T ss_pred CCceEEcCCCcCcccCC---CcchHHHHh-ccC-CCCceEEEEeccCccccCHHHHHHHHHHHHhcCCCeEEEEEcCCcc
Confidence 34456555433221111 000000000 111 1233667777876542 23334444444443333444444332111
Q ss_pred CCccccCchhhhhhcCCCceEEecccch---HHHhhCCCcceee----eccCchhHHHHHhhCCceecccccccccccee
Q 036520 326 TDDVDALPLGFADTIRGKGIVSIGWAPQ---LEILAHPSIGTSL----FHAGWGSVIETLQFGHSLVVLPLIIDQPLNAR 398 (473)
Q Consensus 326 ~~~~~~~p~~~~~~~~~~nv~~~~~~pq---~~ll~~~~~~~~I----tHGG~~s~~eal~~GvP~l~~P~~~DQ~~na~ 398 (473)
...+-.........+|+.+.+++++ ..++..+++ +| +-|..+++.||+++|+|+|+.+.. ....
T Consensus 245 ---~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~--~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~----~~~~ 315 (377)
T cd03798 245 ---REALEALAAELGLEDRVTFLGAVPHEEVPAYYAAADV--FVLPSLREGFGLVLLEAMACGLPVVATDVG----GIPE 315 (377)
T ss_pred ---hHHHHHHHHhcCCcceEEEeCCCCHHHHHHHHHhcCe--eecchhhccCChHHHHHHhcCCCEEEecCC----ChHH
Confidence 0101000000112458999999987 466778887 55 224557899999999999986643 3344
Q ss_pred eeeecceEEEEecCCCCCcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHH
Q 036520 399 LLVDKDLAVQVERKDDGSFTRDGIAKALRLATVSEEGEKLRVRAREAANTFNDKKLHDDYSVRFVEYLK 467 (473)
Q Consensus 399 ~v~~~G~G~~l~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (473)
.+++.+.|...+.. +.+++.++|.++++ ++.. +..++....+.+.-+.+..++.+.+.+.
T Consensus 316 ~~~~~~~g~~~~~~-----~~~~l~~~i~~~~~---~~~~-~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 375 (377)
T cd03798 316 IITDGENGLLVPPG-----DPEALAEAILRLLA---DPWL-RLGRAARRRVAERFSWENVAERLLELYR 375 (377)
T ss_pred HhcCCcceeEECCC-----CHHHHHHHHHHHhc---CcHH-HHhHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 45566667777654 88999999999999 5553 2223333333333334455555555543
No 60
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=99.11 E-value=1.3e-07 Score=92.19 Aligned_cols=109 Identities=16% Similarity=0.298 Sum_probs=72.2
Q ss_pred CCceEEec-ccch---HHHhhCCCcceee--ec----cCchhHHHHHhhCCceeccccccccccceeeeeecceEEEEec
Q 036520 342 GKGIVSIG-WAPQ---LEILAHPSIGTSL--FH----AGWGSVIETLQFGHSLVVLPLIIDQPLNARLLVDKDLAVQVER 411 (473)
Q Consensus 342 ~~nv~~~~-~~pq---~~ll~~~~~~~~I--tH----GG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~ 411 (473)
.+|+.+.+ |+|+ ..++..+++ +| ++ |..+++.||+++|+|+|+.+..+ ...+...+.|..++.
T Consensus 246 ~~~v~~~~~~~~~~~~~~~~~~ad~--~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i~~~~~g~~~~~ 318 (366)
T cd03822 246 ADRVIFINRYLPDEELPELFSAADV--VVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEVLDGGTGLLVPP 318 (366)
T ss_pred CCcEEEecCcCCHHHHHHHHhhcCE--EEecccccccccchHHHHHHHcCCCEEecCCCC-----hheeeeCCCcEEEcC
Confidence 45788775 4876 567788888 55 22 33468999999999999977644 344555677877765
Q ss_pred CCCCCcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHhccCCCcHHHHHHHHHH
Q 036520 412 KDDGSFTRDGIAKALRLATVSEEGEKLRVRAREAANTFNDKKLHDDYSVRFVEY 465 (473)
Q Consensus 412 ~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 465 (473)
. +.++++++|.++++ +++.+++..+-+....+.-+.+..++.+.+.
T Consensus 319 ~-----d~~~~~~~l~~l~~---~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 364 (366)
T cd03822 319 G-----DPAALAEAIRRLLA---DPELAQALRARAREYARAMSWERVAERYLRL 364 (366)
T ss_pred C-----CHHHHHHHHHHHHc---ChHHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Confidence 4 68999999999999 5544444443333333333445555555554
No 61
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.11 E-value=2.6e-07 Score=92.11 Aligned_cols=123 Identities=14% Similarity=0.048 Sum_probs=72.2
Q ss_pred CccEEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCcccCCCeEEEEecCCccccccccCCCCCC
Q 036520 3 RKLHVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPKNIQRLPKPAPESEVAALINFVEFPLPASAALDDKLLLPEG 82 (473)
Q Consensus 3 ~~~~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~l~~~ 82 (473)
++-||.+++....|+-..+..+|++|+++||+|++++........+. ....++.++.++....
T Consensus 2 ~~~~~~~~~~~~~~~~~R~~~~a~~L~~~G~~V~ii~~~~~~~~~~~-----~~~~~v~~~~~~~~~~------------ 64 (415)
T cd03816 2 KRKRVCVLVLGDIGRSPRMQYHALSLAKHGWKVDLVGYLETPPHDEI-----LSNPNITIHPLPPPPQ------------ 64 (415)
T ss_pred CccEEEEEEecccCCCHHHHHHHHHHHhcCceEEEEEecCCCCCHHH-----hcCCCEEEEECCCCcc------------
Confidence 34478888888888889999999999999999999986532211110 1124777777752110
Q ss_pred CccCCCCChhhHHHHHHHHhhhhhHHHHHHHhCCCcEEEEcC-Cc---c-hHHHHHHHcCCCeEEEec
Q 036520 83 AEATVDIPSENIQYLKIAYDLLQHPFKQFVAQQSVDWIIVDV-MS---H-WAGKIAQEYHVPLLLFSA 145 (473)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~-~~---~-~~~~~A~~lgiP~v~~~~ 145 (473)
..........++..........+..+++..+||+|++.. .. . .+..+++..++|.|..+.
T Consensus 65 ---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Dvi~~~~~~~~~~~~~a~~~~~~~~~~~V~~~h 129 (415)
T cd03816 65 ---RLNKLPFLLFAPLKVLWQFFSLLWLLYKLRPADYILIQNPPSIPTLLIAWLYCLLRRTKLIIDWH 129 (415)
T ss_pred ---ccccchHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHHhCCeEEEEcC
Confidence 001111112222222223333444456677899999753 21 1 234456778999887644
No 62
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.09 E-value=3.6e-09 Score=103.71 Aligned_cols=156 Identities=16% Similarity=0.182 Sum_probs=91.4
Q ss_pred cEEEEeecCcccCCHHHHHHHHHHHhcC-----CCCEEEEEcCCCCCCCccccCchhhhhhc-CCCceEEecccch---H
Q 036520 284 SVVFVGFGSECKLSKDQVYEIAYGLELS-----GLPFLWALRKPEWATDDVDALPLGFADTI-RGKGIVSIGWAPQ---L 354 (473)
Q Consensus 284 ~~V~vs~Gs~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~~p~~~~~~~-~~~nv~~~~~~pq---~ 354 (473)
..|+++.+-.... .+.+..+++++.+. +.++++...+... .-..+.+.. ..+++.+.+.+++ .
T Consensus 198 ~~vl~~~hr~~~~-~k~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~ 269 (365)
T TIGR00236 198 RYILLTLHRRENV-GEPLENIFKAIREIVEEFEDVQIVYPVHLNPV-------VREPLHKHLGDSKRVHLIEPLEYLDFL 269 (365)
T ss_pred CEEEEecCchhhh-hhHHHHHHHHHHHHHHHCCCCEEEEECCCChH-------HHHHHHHHhCCCCCEEEECCCChHHHH
Confidence 3666655432211 13466677766543 4555655332211 001111211 2357888876665 4
Q ss_pred HHhhCCCcceeeeccCchhHHHHHhhCCceeccccccccccceeeeeecceEEEEecCCCCCcCHHHHHHHHHHHhcCcc
Q 036520 355 EILAHPSIGTSLFHAGWGSVIETLQFGHSLVVLPLIIDQPLNARLLVDKDLAVQVERKDDGSFTRDGIAKALRLATVSEE 434 (473)
Q Consensus 355 ~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~t~~~l~~~i~~ll~~~~ 434 (473)
.++..+++ +|+-.|. .+.||+++|+|+|.++-.++++. +.+.|.+..+. .+.++|.+++.++++
T Consensus 270 ~~l~~ad~--vv~~Sg~-~~~EA~a~g~PvI~~~~~~~~~e----~~~~g~~~lv~------~d~~~i~~ai~~ll~--- 333 (365)
T TIGR00236 270 NLAANSHL--ILTDSGG-VQEEAPSLGKPVLVLRDTTERPE----TVEAGTNKLVG------TDKENITKAAKRLLT--- 333 (365)
T ss_pred HHHHhCCE--EEECChh-HHHHHHHcCCCEEECCCCCCChH----HHhcCceEEeC------CCHHHHHHHHHHHHh---
Confidence 66777887 8987764 47999999999999876555542 23356666553 278899999999998
Q ss_pred hHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHH
Q 036520 435 GEKLRVRAREAANTFNDKKLHDDYSVRFVEYLK 467 (473)
Q Consensus 435 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (473)
+++.++++..-...+.+ ..+.+.+++.+.
T Consensus 334 ~~~~~~~~~~~~~~~g~----~~a~~ri~~~l~ 362 (365)
T TIGR00236 334 DPDEYKKMSNASNPYGD----GEASERIVEELL 362 (365)
T ss_pred ChHHHHHhhhcCCCCcC----chHHHHHHHHHH
Confidence 77777665443322222 334444544444
No 63
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.09 E-value=1.5e-07 Score=91.66 Aligned_cols=142 Identities=14% Similarity=0.050 Sum_probs=86.4
Q ss_pred EEEEeecCcccCCHHHHHHHHHHHhcCC-CCEEEEEcCCCCCCCccccCchhhhhhcCCCceEEecccch---HHHhhCC
Q 036520 285 VVFVGFGSECKLSKDQVYEIAYGLELSG-LPFLWALRKPEWATDDVDALPLGFADTIRGKGIVSIGWAPQ---LEILAHP 360 (473)
Q Consensus 285 ~V~vs~Gs~~~~~~~~~~~~~~al~~~~-~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq---~~ll~~~ 360 (473)
.+++..|+.. .......+++++.+.. .+++++-.+.. ...+-.-..+....+|+.+.+|+|+ ..++..+
T Consensus 192 ~~i~~~G~~~--~~K~~~~li~a~~~l~~~~l~i~G~g~~-----~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~~a 264 (357)
T cd03795 192 PFFLFVGRLV--YYKGLDVLLEAAAALPDAPLVIVGEGPL-----EAELEALAAALGLLDRVRFLGRLDDEEKAALLAAC 264 (357)
T ss_pred cEEEEecccc--cccCHHHHHHHHHhccCcEEEEEeCChh-----HHHHHHHHHhcCCcceEEEcCCCCHHHHHHHHHhC
Confidence 5666777764 3345556667776665 44444432211 1111110011223569999999997 4577888
Q ss_pred Ccceeee---ccCc-hhHHHHHhhCCceeccccccccccceeeeeecceEEEEecCCCCCcCHHHHHHHHHHHhcCcchH
Q 036520 361 SIGTSLF---HAGW-GSVIETLQFGHSLVVLPLIIDQPLNARLLVDKDLAVQVERKDDGSFTRDGIAKALRLATVSEEGE 436 (473)
Q Consensus 361 ~~~~~It---HGG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~t~~~l~~~i~~ll~~~~~~ 436 (473)
++-++.+ +.|. .++.||+++|+|+|+....+....... +.+.|...+.. +.++++++|.++++ ++
T Consensus 265 d~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~~i~~---~~~~g~~~~~~-----d~~~~~~~i~~l~~---~~ 333 (357)
T cd03795 265 DVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGSYVNL---HGVTGLVVPPG-----DPAALAEAIRRLLE---DP 333 (357)
T ss_pred CEEEeCCcccccccchHHHHHHHcCCCEEecCCCCchhHHhh---CCCceEEeCCC-----CHHHHHHHHHHHHH---CH
Confidence 8833333 2343 479999999999999765443332221 24677777654 78999999999999 66
Q ss_pred HHHHHHHH
Q 036520 437 KLRVRARE 444 (473)
Q Consensus 437 ~~~~~a~~ 444 (473)
+.++++.+
T Consensus 334 ~~~~~~~~ 341 (357)
T cd03795 334 ELRERLGE 341 (357)
T ss_pred HHHHHHHH
Confidence 55444443
No 64
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.07 E-value=8.1e-09 Score=101.15 Aligned_cols=140 Identities=14% Similarity=0.045 Sum_probs=87.6
Q ss_pred CcEEEEeecCcccC-CHHHHHHHHHHHhcCCC-CEEEEEcCCCCCCCccccCchhhhhhcC--CCceEEecccch---HH
Q 036520 283 RSVVFVGFGSECKL-SKDQVYEIAYGLELSGL-PFLWALRKPEWATDDVDALPLGFADTIR--GKGIVSIGWAPQ---LE 355 (473)
Q Consensus 283 ~~~V~vs~Gs~~~~-~~~~~~~~~~al~~~~~-~~i~~~~~~~~~~~~~~~~p~~~~~~~~--~~nv~~~~~~pq---~~ 355 (473)
++.|++++|..... ..+.+..+++++..... ++.+++.+.... ...+-+ ...... .+|+.+.+..++ ..
T Consensus 198 ~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~~~---~~~l~~-~~~~~~~~~~~v~~~~~~~~~~~~~ 273 (363)
T cd03786 198 KKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHPRT---RPRIRE-AGLEFLGHHPNVLLISPLGYLYFLL 273 (363)
T ss_pred CCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCCCh---HHHHHH-HHHhhccCCCCEEEECCcCHHHHHH
Confidence 44788888876543 35667778888866533 355554433211 011111 111111 458888776654 45
Q ss_pred HhhCCCcceeeeccCchhHHHHHhhCCceeccccccccccceeeeeecceEEEEecCCCCCcCHHHHHHHHHHHhcCcch
Q 036520 356 ILAHPSIGTSLFHAGWGSVIETLQFGHSLVVLPLIIDQPLNARLLVDKDLAVQVERKDDGSFTRDGIAKALRLATVSEEG 435 (473)
Q Consensus 356 ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~t~~~l~~~i~~ll~~~~~ 435 (473)
++..+++ ||+..| |.+.||+++|+|+|+++.. | .+..+.+.|++..+. -+.++|.++|.++++ +
T Consensus 274 l~~~ad~--~v~~Sg-gi~~Ea~~~g~PvI~~~~~--~--~~~~~~~~g~~~~~~------~~~~~i~~~i~~ll~---~ 337 (363)
T cd03786 274 LLKNADL--VLTDSG-GIQEEASFLGVPVLNLRDR--T--ERPETVESGTNVLVG------TDPEAILAAIEKLLS---D 337 (363)
T ss_pred HHHcCcE--EEEcCc-cHHhhhhhcCCCEEeeCCC--C--ccchhhheeeEEecC------CCHHHHHHHHHHHhc---C
Confidence 6777888 999998 7888999999999998642 2 133445556665442 157899999999999 6
Q ss_pred HHHHHHH
Q 036520 436 EKLRVRA 442 (473)
Q Consensus 436 ~~~~~~a 442 (473)
+..++++
T Consensus 338 ~~~~~~~ 344 (363)
T cd03786 338 EFAYSLM 344 (363)
T ss_pred chhhhcC
Confidence 6555544
No 65
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.07 E-value=1.8e-08 Score=100.91 Aligned_cols=110 Identities=17% Similarity=0.132 Sum_probs=69.9
Q ss_pred eEEecccch-HHHhhCCCcceeeec-----cCchhHHHHHhhCCceeccccccccccceeeeeecceEEEEecCCCCCcC
Q 036520 345 IVSIGWAPQ-LEILAHPSIGTSLFH-----AGWGSVIETLQFGHSLVVLPLIIDQPLNARLLVDKDLAVQVERKDDGSFT 418 (473)
Q Consensus 345 v~~~~~~pq-~~ll~~~~~~~~ItH-----GG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~t 418 (473)
+.+.+...+ ..+++.+++ ++.. ||..++.||+++|+|+|+-|...++......+.+.|+++. .. +
T Consensus 304 v~l~~~~~el~~~y~~aDi--~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~~g~~~~--~~-----d 374 (425)
T PRK05749 304 VLLGDTMGELGLLYAIADI--AFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQAGAAIQ--VE-----D 374 (425)
T ss_pred EEEEecHHHHHHHHHhCCE--EEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHHCCCeEE--EC-----C
Confidence 444443333 677888887 4432 3444699999999999999987777776666656676654 32 6
Q ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHHHHHhc-c-CCCcHHHHHHHHHHH
Q 036520 419 RDGIAKALRLATVSEEGEKLRVRAREAANTFN-D-KKLHDDYSVRFVEYL 466 (473)
Q Consensus 419 ~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~-~-~~~~~~~~~~~~~~~ 466 (473)
.++|+++|.++++ |++.++++.+-+.... + .+..++.++.+.+.+
T Consensus 375 ~~~La~~l~~ll~---~~~~~~~m~~~a~~~~~~~~~~~~~~~~~l~~~l 421 (425)
T PRK05749 375 AEDLAKAVTYLLT---DPDARQAYGEAGVAFLKQNQGALQRTLQLLEPYL 421 (425)
T ss_pred HHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHhc
Confidence 7899999999999 6666555444333322 1 233344444444433
No 66
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.06 E-value=3.5e-07 Score=89.36 Aligned_cols=111 Identities=12% Similarity=0.060 Sum_probs=72.0
Q ss_pred CceEEecccc-h---HHHhhCCCcceeeec----cCchhHHHHHhhCCceeccccccccccceeeeeecceEEEEecCCC
Q 036520 343 KGIVSIGWAP-Q---LEILAHPSIGTSLFH----AGWGSVIETLQFGHSLVVLPLIIDQPLNARLLVDKDLAVQVERKDD 414 (473)
Q Consensus 343 ~nv~~~~~~p-q---~~ll~~~~~~~~ItH----GG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~ 414 (473)
.++.+.+|++ + ..+++.+++ +|.- |..+++.||+++|+|+|+.... .....+.+.+.|..++..
T Consensus 244 ~~v~~~g~~~~~~~~~~~~~~ad~--~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~----~~~e~~~~~~~g~~~~~~-- 315 (365)
T cd03825 244 FPVHYLGSLNDDESLALIYSAADV--FVVPSLQENFPNTAIEALACGTPVVAFDVG----GIPDIVDHGVTGYLAKPG-- 315 (365)
T ss_pred CceEecCCcCCHHHHHHHHHhCCE--EEeccccccccHHHHHHHhcCCCEEEecCC----CChhheeCCCceEEeCCC--
Confidence 4788889998 4 356888888 7764 3357999999999999976542 333344444567666543
Q ss_pred CCcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHH-hccCCCcHHHHHHHHHHHH
Q 036520 415 GSFTRDGIAKALRLATVSEEGEKLRVRAREAANT-FNDKKLHDDYSVRFVEYLK 467 (473)
Q Consensus 415 ~~~t~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~ 467 (473)
+.+++++++.++++ +++.+++..+-+.. ..+.-+.+..++.+++..+
T Consensus 316 ---~~~~~~~~l~~l~~---~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~y~ 363 (365)
T cd03825 316 ---DPEDLAEGIEWLLA---DPDEREELGEAARELAENEFDSRVQAKRYLSLYE 363 (365)
T ss_pred ---CHHHHHHHHHHHHh---CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 78899999999998 56543333332222 2223344556666665543
No 67
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=99.03 E-value=5.8e-07 Score=87.62 Aligned_cols=107 Identities=17% Similarity=0.073 Sum_probs=67.8
Q ss_pred CCceEEecccch---HHHhhCCCcceeeec-cC-chhHHHHHhhCCceeccccccccccceeeeeecceEEEEecCCCCC
Q 036520 342 GKGIVSIGWAPQ---LEILAHPSIGTSLFH-AG-WGSVIETLQFGHSLVVLPLIIDQPLNARLLVDKDLAVQVERKDDGS 416 (473)
Q Consensus 342 ~~nv~~~~~~pq---~~ll~~~~~~~~ItH-GG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~ 416 (473)
.+++.+.+|+++ ..++..+++-++-++ .| .+++.||+++|+|+|+.+.. .....+.+ +.|...+.
T Consensus 261 ~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~~----~~~~~~~~-~~~~~~~~----- 330 (375)
T cd03821 261 EDRVTFTGMLYGEDKAAALADADLFVLPSHSENFGIVVAEALACGTPVVTTDKV----PWQELIEY-GCGWVVDD----- 330 (375)
T ss_pred cceEEEcCCCChHHHHHHHhhCCEEEeccccCCCCcHHHHHHhcCCCEEEcCCC----CHHHHhhc-CceEEeCC-----
Confidence 458999999996 455788888222222 22 46899999999999997643 23333444 67766644
Q ss_pred cCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHh-ccCCCcHHHHHHH
Q 036520 417 FTRDGIAKALRLATVSEEGEKLRVRAREAANTF-NDKKLHDDYSVRF 462 (473)
Q Consensus 417 ~t~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~ 462 (473)
+.+++.++|.++++ +++.++++.+-+... .+.-+.+..++.+
T Consensus 331 -~~~~~~~~i~~l~~---~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 373 (375)
T cd03821 331 -DVDALAAALRRALE---LPQRLKAMGENGRALVEERFSWTAIAQQL 373 (375)
T ss_pred -ChHHHHHHHHHHHh---CHHHHHHHHHHHHHHHHHhcCHHHHHHHh
Confidence 34899999999999 655544444444333 3333334444433
No 68
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=99.00 E-value=2.3e-07 Score=89.45 Aligned_cols=89 Identities=16% Similarity=0.167 Sum_probs=62.0
Q ss_pred CCceEEecccch-HHHhhCCCcceeeec----cCchhHHHHHhhCCceeccccccccccceeeeeecceEEEEecCCCCC
Q 036520 342 GKGIVSIGWAPQ-LEILAHPSIGTSLFH----AGWGSVIETLQFGHSLVVLPLIIDQPLNARLLVDKDLAVQVERKDDGS 416 (473)
Q Consensus 342 ~~nv~~~~~~pq-~~ll~~~~~~~~ItH----GG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~ 416 (473)
..++.+.++.++ .+++..+++ +|.- |..+++.||+++|+|+|+.... ..+..+++.+.|...+..
T Consensus 245 ~~~v~~~g~~~~~~~~~~~~d~--~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~----~~~e~i~~~~~g~~~~~~---- 314 (353)
T cd03811 245 ADRVHFLGFQSNPYPYLKAADL--FVLSSRYEGFPNVLLEAMALGTPVVATDCP----GPREILEDGENGLLVPVG---- 314 (353)
T ss_pred CccEEEecccCCHHHHHHhCCE--EEeCcccCCCCcHHHHHHHhCCCEEEcCCC----ChHHHhcCCCceEEECCC----
Confidence 357888888765 678888888 5532 3347899999999999986443 555667777888888764
Q ss_pred cCHHHH---HHHHHHHhcCcchHHHHHHHHH
Q 036520 417 FTRDGI---AKALRLATVSEEGEKLRVRARE 444 (473)
Q Consensus 417 ~t~~~l---~~~i~~ll~~~~~~~~~~~a~~ 444 (473)
+.+.+ .+++.++++ +++.++++.+
T Consensus 315 -~~~~~~~~~~~i~~~~~---~~~~~~~~~~ 341 (353)
T cd03811 315 -DEAALAAAALALLDLLL---DPELRERLAA 341 (353)
T ss_pred -CHHHHHHHHHHHHhccC---ChHHHHHHHH
Confidence 66666 556666666 5555554444
No 69
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=98.99 E-value=9.3e-07 Score=87.75 Aligned_cols=77 Identities=17% Similarity=0.201 Sum_probs=53.6
Q ss_pred CCceEEecccch---HHHhhCCCcceeee---ccCc-hhHHHHHhhCCceeccccccccccceeeeeecceEEEEecCCC
Q 036520 342 GKGIVSIGWAPQ---LEILAHPSIGTSLF---HAGW-GSVIETLQFGHSLVVLPLIIDQPLNARLLVDKDLAVQVERKDD 414 (473)
Q Consensus 342 ~~nv~~~~~~pq---~~ll~~~~~~~~It---HGG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~ 414 (473)
.+++.+.+|+|+ ..+++.+++ +|. +-|. .++.||+++|+|+|+.+..+ ....+.+ |-+. +..
T Consensus 249 ~~~v~~~G~~~~~~~~~~l~~ad~--~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg----~~e~i~~-~~~~-~~~--- 317 (398)
T cd03796 249 QDRVELLGAVPHERVRDVLVQGHI--FLNTSLTEAFCIAIVEAASCGLLVVSTRVGG----IPEVLPP-DMIL-LAE--- 317 (398)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEeCChhhccCHHHHHHHHcCCCEEECCCCC----chhheeC-Ccee-ecC---
Confidence 346888999986 567788888 553 3344 49999999999999977643 2223333 3332 222
Q ss_pred CCcCHHHHHHHHHHHhc
Q 036520 415 GSFTRDGIAKALRLATV 431 (473)
Q Consensus 415 ~~~t~~~l~~~i~~ll~ 431 (473)
.+.++++++|.++++
T Consensus 318 --~~~~~l~~~l~~~l~ 332 (398)
T cd03796 318 --PDVESIVRKLEEAIS 332 (398)
T ss_pred --CCHHHHHHHHHHHHh
Confidence 278999999999998
No 70
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.98 E-value=5e-07 Score=88.09 Aligned_cols=109 Identities=9% Similarity=0.022 Sum_probs=70.9
Q ss_pred CCceEEecccch-HHHhhCCCcceeeecc----CchhHHHHHhhCCceeccccccccccceeeeeecceEEEEecCCCCC
Q 036520 342 GKGIVSIGWAPQ-LEILAHPSIGTSLFHA----GWGSVIETLQFGHSLVVLPLIIDQPLNARLLVDKDLAVQVERKDDGS 416 (473)
Q Consensus 342 ~~nv~~~~~~pq-~~ll~~~~~~~~ItHG----G~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~ 416 (473)
.+|+.+.++..+ ..++..+++ +|.-. ..+++.||+++|+|+|+. |...+...+++.| ..+...
T Consensus 244 ~~~v~~~g~~~~~~~~~~~ad~--~v~~s~~e~~~~~~~Ea~a~G~PvI~~----~~~~~~e~i~~~g--~~~~~~---- 311 (360)
T cd04951 244 SNRVKLLGLRDDIAAYYNAADL--FVLSSAWEGFGLVVAEAMACELPVVAT----DAGGVREVVGDSG--LIVPIS---- 311 (360)
T ss_pred CCcEEEecccccHHHHHHhhce--EEecccccCCChHHHHHHHcCCCEEEe----cCCChhhEecCCc--eEeCCC----
Confidence 357888887755 788888888 55432 247899999999999974 4555666666634 444433
Q ss_pred cCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHhccCCCcHHHHHHHHHH
Q 036520 417 FTRDGIAKALRLATVSEEGEKLRVRAREAANTFNDKKLHDDYSVRFVEY 465 (473)
Q Consensus 417 ~t~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 465 (473)
+.++++++|.++++. ++.+++.+...++...+.-+.+..+..+.+.
T Consensus 312 -~~~~~~~~i~~ll~~--~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 357 (360)
T cd04951 312 -DPEALANKIDEILKM--SGEERDIIGARRERIVKKFSINSIVQQWLTL 357 (360)
T ss_pred -CHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 788999999999842 4555555544444443333444555555543
No 71
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=98.96 E-value=1.7e-06 Score=85.65 Aligned_cols=85 Identities=14% Similarity=0.093 Sum_probs=59.7
Q ss_pred CCceEEecccchH---HHhhCCCcceeeec---cC-chhHHHHHhhCCceeccccccccccceeeeeecceEEEEecCCC
Q 036520 342 GKGIVSIGWAPQL---EILAHPSIGTSLFH---AG-WGSVIETLQFGHSLVVLPLIIDQPLNARLLVDKDLAVQVERKDD 414 (473)
Q Consensus 342 ~~nv~~~~~~pq~---~ll~~~~~~~~ItH---GG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~ 414 (473)
.+++.+.+++|+. .++..+++ ++.. -| ..++.||+++|+|+|+.-..+ ....+.+.+.|...+
T Consensus 279 ~~~V~f~g~~~~~~~~~~l~~ad~--~l~~s~~E~~g~~~lEAma~G~PvI~s~~~~----~~e~i~~~~~g~~~~---- 348 (392)
T cd03805 279 EDQVIFLPSISDSQKELLLSSARA--LLYTPSNEHFGIVPLEAMYAGKPVIACNSGG----PLETVVDGETGFLCE---- 348 (392)
T ss_pred CceEEEeCCCChHHHHHHHhhCeE--EEECCCcCCCCchHHHHHHcCCCEEEECCCC----cHHHhccCCceEEeC----
Confidence 4689999999875 56888888 6532 22 257899999999999875432 233344445676653
Q ss_pred CCcCHHHHHHHHHHHhcCcchHHHHHH
Q 036520 415 GSFTRDGIAKALRLATVSEEGEKLRVR 441 (473)
Q Consensus 415 ~~~t~~~l~~~i~~ll~~~~~~~~~~~ 441 (473)
. +.++++++|.++++ +++.+++
T Consensus 349 -~-~~~~~a~~i~~l~~---~~~~~~~ 370 (392)
T cd03805 349 -P-TPEEFAEAMLKLAN---DPDLADR 370 (392)
T ss_pred -C-CHHHHHHHHHHHHh---ChHHHHH
Confidence 2 68899999999998 5544443
No 72
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.95 E-value=1.6e-06 Score=84.26 Aligned_cols=85 Identities=15% Similarity=0.165 Sum_probs=61.2
Q ss_pred CCceEEecccch---HHHhhCCCcceeee--c--------cCchhHHHHHhhCCceeccccccccccceeeeeecceEEE
Q 036520 342 GKGIVSIGWAPQ---LEILAHPSIGTSLF--H--------AGWGSVIETLQFGHSLVVLPLIIDQPLNARLLVDKDLAVQ 408 (473)
Q Consensus 342 ~~nv~~~~~~pq---~~ll~~~~~~~~It--H--------GG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~ 408 (473)
.+|+.+.+++|+ ..++..+++ +|. . |.-+++.||+++|+|+|+.+..+ ....+++...|..
T Consensus 235 ~~~v~~~g~~~~~~l~~~~~~adi--~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~----~~~~i~~~~~g~~ 308 (355)
T cd03799 235 EDRVTLLGAKSQEEVRELLRAADL--FVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSG----IPELVEDGETGLL 308 (355)
T ss_pred CCeEEECCcCChHHHHHHHHhCCE--EEecceecCCCCccCccHHHHHHHHcCCCEEecCCCC----cchhhhCCCceEE
Confidence 358999999976 556778888 554 2 33479999999999999876532 2234444447877
Q ss_pred EecCCCCCcCHHHHHHHHHHHhcCcchHHHHH
Q 036520 409 VERKDDGSFTRDGIAKALRLATVSEEGEKLRV 440 (473)
Q Consensus 409 l~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~ 440 (473)
++.. +.++++++|.++++ ++..++
T Consensus 309 ~~~~-----~~~~l~~~i~~~~~---~~~~~~ 332 (355)
T cd03799 309 VPPG-----DPEALADAIERLLD---DPELRR 332 (355)
T ss_pred eCCC-----CHHHHHHHHHHHHh---CHHHHH
Confidence 7643 88999999999998 555433
No 73
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=98.94 E-value=2.3e-06 Score=91.44 Aligned_cols=182 Identities=10% Similarity=0.061 Sum_probs=98.3
Q ss_pred hhhhhccccCCCCCcEEEEeecCcccCCHHHHHHHHHHHhcC-----CCCEEEEEcCCCCCCCcc---ccCchhhhhhc-
Q 036520 270 ISKIFQWLDEQKPRSVVFVGFGSECKLSKDQVYEIAYGLELS-----GLPFLWALRKPEWATDDV---DALPLGFADTI- 340 (473)
Q Consensus 270 ~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~---~~~p~~~~~~~- 340 (473)
+.++..|+.... + .+++..|... +.+-+..+++|+... ..++.++++......+.. ...-..+...+
T Consensus 467 ~~~l~r~~~~pd-k-pvIL~VGRL~--p~KGi~~LIeAf~~L~~l~~~~nL~LIiG~gdd~d~l~~~~~~~l~~L~~li~ 542 (1050)
T TIGR02468 467 WSEIMRFFTNPR-K-PMILALARPD--PKKNITTLVKAFGECRPLRELANLTLIMGNRDDIDEMSSGSSSVLTSVLKLID 542 (1050)
T ss_pred hHHHHhhcccCC-C-cEEEEEcCCc--cccCHHHHHHHHHHhHhhccCCCEEEEEecCchhhhhhccchHHHHHHHHHHH
Confidence 345666775433 2 5556667765 334455556666443 124545555432110000 00001111111
Q ss_pred ---CCCceEEecccchHH---HhhCCC--cceeeec---cCc-hhHHHHHhhCCceeccccccccccceeeeeecceEEE
Q 036520 341 ---RGKGIVSIGWAPQLE---ILAHPS--IGTSLFH---AGW-GSVIETLQFGHSLVVLPLIIDQPLNARLLVDKDLAVQ 408 (473)
Q Consensus 341 ---~~~nv~~~~~~pq~~---ll~~~~--~~~~ItH---GG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~ 408 (473)
-.++|.+.+++++.+ ++..++ .++||.- =|. .++.||+++|+|+|+....+ ....++.-.-|+.
T Consensus 543 ~lgL~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvGG----~~EII~~g~nGlL 618 (1050)
T TIGR02468 543 KYDLYGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGG----PVDIHRVLDNGLL 618 (1050)
T ss_pred HhCCCCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCCC----cHHHhccCCcEEE
Confidence 245788888988744 555552 1237764 333 68999999999999987543 2222333345777
Q ss_pred EecCCCCCcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHH
Q 036520 409 VERKDDGSFTRDGIAKALRLATVSEEGEKLRVRAREAANTFNDKKLHDDYSVRFVEYLK 467 (473)
Q Consensus 409 l~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (473)
++.. +.++|+++|.++++ ++..++++.+-+......-+-+..++.+.+.+.
T Consensus 619 VdP~-----D~eaLA~AL~~LL~---Dpelr~~m~~~gr~~v~~FSWe~ia~~yl~~i~ 669 (1050)
T TIGR02468 619 VDPH-----DQQAIADALLKLVA---DKQLWAECRQNGLKNIHLFSWPEHCKTYLSRIA 669 (1050)
T ss_pred ECCC-----CHHHHHHHHHHHhh---CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 7654 78899999999999 666655554443332222233444455544443
No 74
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.93 E-value=1.6e-06 Score=84.97 Aligned_cols=87 Identities=20% Similarity=0.145 Sum_probs=65.4
Q ss_pred CCceEEecccch---HHHhhCCCcceeeec----------cCchhHHHHHhhCCceeccccccccccceeeeeecceEEE
Q 036520 342 GKGIVSIGWAPQ---LEILAHPSIGTSLFH----------AGWGSVIETLQFGHSLVVLPLIIDQPLNARLLVDKDLAVQ 408 (473)
Q Consensus 342 ~~nv~~~~~~pq---~~ll~~~~~~~~ItH----------GG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~ 408 (473)
.+++.+.+++|+ ..++..+++ +|.- |-.+++.||+++|+|+|+.+.. .++..+.+.+.|..
T Consensus 244 ~~~v~~~g~~~~~~l~~~~~~ad~--~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~----~~~e~i~~~~~g~~ 317 (367)
T cd05844 244 GGRVTFLGAQPHAEVRELMRRARI--FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHG----GIPEAVEDGETGLL 317 (367)
T ss_pred CCeEEECCCCCHHHHHHHHHhCCE--EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCC----CchhheecCCeeEE
Confidence 357899999986 455888888 5532 2347999999999999987653 36666777788887
Q ss_pred EecCCCCCcCHHHHHHHHHHHhcCcchHHHHHHH
Q 036520 409 VERKDDGSFTRDGIAKALRLATVSEEGEKLRVRA 442 (473)
Q Consensus 409 l~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~a 442 (473)
++.. +.++++++|.++++ +++.++++
T Consensus 318 ~~~~-----d~~~l~~~i~~l~~---~~~~~~~~ 343 (367)
T cd05844 318 VPEG-----DVAALAAALGRLLA---DPDLRARM 343 (367)
T ss_pred ECCC-----CHHHHHHHHHHHHc---CHHHHHHH
Confidence 7654 78999999999999 66544433
No 75
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.92 E-value=2.9e-06 Score=85.30 Aligned_cols=112 Identities=12% Similarity=-0.025 Sum_probs=69.9
Q ss_pred CCceEEecccchHHH---hhCC--Ccceeeecc---C-chhHHHHHhhCCceeccccccccccceeeeeecceEEEEecC
Q 036520 342 GKGIVSIGWAPQLEI---LAHP--SIGTSLFHA---G-WGSVIETLQFGHSLVVLPLIIDQPLNARLLVDKDLAVQVERK 412 (473)
Q Consensus 342 ~~nv~~~~~~pq~~l---l~~~--~~~~~ItHG---G-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~ 412 (473)
.+++.+.+++++.++ +..+ ++++||... | -.+++||+++|+|+|+.... .+...+++...|..++..
T Consensus 316 ~~~V~f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~~g----g~~eiv~~~~~G~lv~~~ 391 (439)
T TIGR02472 316 YGKVAYPKHHRPDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIVATDDG----GPRDIIANCRNGLLVDVL 391 (439)
T ss_pred CceEEecCCCCHHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCCCEEEeCCC----CcHHHhcCCCcEEEeCCC
Confidence 357888888887554 6544 223377643 3 35999999999999987653 233344444567777654
Q ss_pred CCCCcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHH-hccCCCcHHHHHHHHHH
Q 036520 413 DDGSFTRDGIAKALRLATVSEEGEKLRVRAREAANT-FNDKKLHDDYSVRFVEY 465 (473)
Q Consensus 413 ~~~~~t~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~ 465 (473)
+.++++++|.++++ ++..+++..+-+.. +.+.-+-+..++.+.+.
T Consensus 392 -----d~~~la~~i~~ll~---~~~~~~~~~~~a~~~~~~~fsw~~~~~~~~~l 437 (439)
T TIGR02472 392 -----DLEAIASALEDALS---DSSQWQLWSRNGIEGVRRHYSWDAHVEKYLRI 437 (439)
T ss_pred -----CHHHHHHHHHHHHh---CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 78999999999999 66654443333222 22233444455555443
No 76
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.92 E-value=4.7e-07 Score=85.89 Aligned_cols=109 Identities=17% Similarity=0.091 Sum_probs=70.6
Q ss_pred cEEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCCc--cccCCCCCCCcccCCCeEEEEecCCccccccccCCCCCC
Q 036520 5 LHVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPKN--IQRLPKPAPESEVAALINFVEFPLPASAALDDKLLLPEG 82 (473)
Q Consensus 5 ~~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~--~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~l~~~ 82 (473)
|||.+=-. ...|+.-+-.+.++|.++||+|.+.+-... .+.+.. -++.+..+.- .+
T Consensus 1 MkIwiDi~-~p~hvhfFk~~I~eL~~~GheV~it~R~~~~~~~LL~~--------yg~~y~~iG~---------~g---- 58 (335)
T PF04007_consen 1 MKIWIDIT-HPAHVHFFKNIIRELEKRGHEVLITARDKDETEELLDL--------YGIDYIVIGK---------HG---- 58 (335)
T ss_pred CeEEEECC-CchHHHHHHHHHHHHHhCCCEEEEEEeccchHHHHHHH--------cCCCeEEEcC---------CC----
Confidence 56666333 233999999999999999999999886432 122222 3666666641 00
Q ss_pred CccCCCCChhhHHHHHHHHhhhhhHHHHHHHhCCCcEEEEcCCcchHHHHHHHcCCCeEEEec
Q 036520 83 AEATVDIPSENIQYLKIAYDLLQHPFKQFVAQQSVDWIIVDVMSHWAGKIAQEYHVPLLLFSA 145 (473)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~ 145 (473)
. ....-+.... .....+.+++++.+||++|+- .+..+..+|..+|+|+|.+.=
T Consensus 59 -----~---~~~~Kl~~~~-~R~~~l~~~~~~~~pDv~is~-~s~~a~~va~~lgiP~I~f~D 111 (335)
T PF04007_consen 59 -----D---SLYGKLLESI-ERQYKLLKLIKKFKPDVAISF-GSPEAARVAFGLGIPSIVFND 111 (335)
T ss_pred -----C---CHHHHHHHHH-HHHHHHHHHHHhhCCCEEEec-CcHHHHHHHHHhCCCeEEEec
Confidence 0 0011111111 124456677888999999975 567888899999999998854
No 77
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.87 E-value=3.1e-06 Score=82.08 Aligned_cols=106 Identities=15% Similarity=0.171 Sum_probs=68.0
Q ss_pred CceEEecccch-HHHhhCCCcceeeeccC----chhHHHHHhhCCceeccccccccccceeeeeecceEEEEecCCCCCc
Q 036520 343 KGIVSIGWAPQ-LEILAHPSIGTSLFHAG----WGSVIETLQFGHSLVVLPLIIDQPLNARLLVDKDLAVQVERKDDGSF 417 (473)
Q Consensus 343 ~nv~~~~~~pq-~~ll~~~~~~~~ItHGG----~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~ 417 (473)
.++.+.+...+ ..++..+++ +|.... .+++.||+++|+|+|+.... .+...+.+ .|..++..
T Consensus 251 ~~v~~~g~~~~~~~~~~~adi--~v~ps~~e~~~~~~~Ea~a~g~PvI~~~~~----~~~e~~~~--~g~~~~~~----- 317 (365)
T cd03807 251 DKVILLGERSDVPALLNALDV--FVLSSLSEGFPNVLLEAMACGLPVVATDVG----DNAELVGD--TGFLVPPG----- 317 (365)
T ss_pred ceEEEccccccHHHHHHhCCE--EEeCCccccCCcHHHHHHhcCCCEEEcCCC----ChHHHhhc--CCEEeCCC-----
Confidence 46666665543 788888888 775543 37999999999999986543 33444444 45556543
Q ss_pred CHHHHHHHHHHHhcCcchHHHH-HHHHHHHHHhccCCCcHHHHHHHHH
Q 036520 418 TRDGIAKALRLATVSEEGEKLR-VRAREAANTFNDKKLHDDYSVRFVE 464 (473)
Q Consensus 418 t~~~l~~~i~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~ 464 (473)
+.+++.++|.++++ +++.+ +..+...+.+.+.-+.+..++.+.+
T Consensus 318 ~~~~l~~~i~~l~~---~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 362 (365)
T cd03807 318 DPEALAEAIEALLA---DPALRQALGEAARERIEENFSIEAMVEAYEE 362 (365)
T ss_pred CHHHHHHHHHHHHh---ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 68999999999998 54433 3333333344433444555555554
No 78
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.87 E-value=2.7e-06 Score=82.83 Aligned_cols=134 Identities=11% Similarity=0.018 Sum_probs=77.6
Q ss_pred cEEEEeecCcccC-CHHHHHHHHHHHhcC--CCCEEEEEcCCCCCCCccccCchhhh---hh-cCCCceEEecccch-HH
Q 036520 284 SVVFVGFGSECKL-SKDQVYEIAYGLELS--GLPFLWALRKPEWATDDVDALPLGFA---DT-IRGKGIVSIGWAPQ-LE 355 (473)
Q Consensus 284 ~~V~vs~Gs~~~~-~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~p~~~~---~~-~~~~nv~~~~~~pq-~~ 355 (473)
..+++..|+.... ..+.+..++..+... +.+++++-.+. .. ........ +. ...+++.+.+|.+. ..
T Consensus 185 ~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l~ivG~~~-~~----~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~ 259 (355)
T cd03819 185 KPVILLPGRLTRWKGQEVFIEALARLKKDDPDVHLLIVGDAQ-GR----RFYYAELLELIKRLGLQDRVTFVGHCSDMPA 259 (355)
T ss_pred ceEEEEeeccccccCHHHHHHHHHHHHhcCCCeEEEEEECCc-cc----chHHHHHHHHHHHcCCcceEEEcCCcccHHH
Confidence 3666777776542 345555555555553 33333333222 11 11111111 11 12357888888544 77
Q ss_pred HhhCCCcceeee--ccC-chhHHHHHhhCCceeccccccccccceeeeeecceEEEEecCCCCCcCHHHHHHHHHHHhc
Q 036520 356 ILAHPSIGTSLF--HAG-WGSVIETLQFGHSLVVLPLIIDQPLNARLLVDKDLAVQVERKDDGSFTRDGIAKALRLATV 431 (473)
Q Consensus 356 ll~~~~~~~~It--HGG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~t~~~l~~~i~~ll~ 431 (473)
++..+++-++-+ +-| .+++.||+++|+|+|+.... .+...+.+.+.|..++.. +.++++++|.+++.
T Consensus 260 ~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~~----~~~e~i~~~~~g~~~~~~-----~~~~l~~~i~~~~~ 329 (355)
T cd03819 260 AYALADIVVSASTEPEAFGRTAVEAQAMGRPVIASDHG----GARETVRPGETGLLVPPG-----DAEALAQALDQILS 329 (355)
T ss_pred HHHhCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCCC----CcHHHHhCCCceEEeCCC-----CHHHHHHHHHHHHh
Confidence 888899833333 123 36999999999999987543 233344444578777654 88999999976664
No 79
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.86 E-value=3.2e-06 Score=81.56 Aligned_cols=154 Identities=14% Similarity=0.071 Sum_probs=89.1
Q ss_pred EEEEeecCcccCCHHHHHHHHHHHhcCCCCEEEEEcCCCCCCCccccCchhhhhhc--CCCceEEecccchH---HHhhC
Q 036520 285 VVFVGFGSECKLSKDQVYEIAYGLELSGLPFLWALRKPEWATDDVDALPLGFADTI--RGKGIVSIGWAPQL---EILAH 359 (473)
Q Consensus 285 ~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~--~~~nv~~~~~~pq~---~ll~~ 359 (473)
.+.+..|... ..+....+++++++.+.+++++-.+.... ......... ..+++.+.+++++. .+++.
T Consensus 172 ~~i~~~Gr~~--~~Kg~~~li~~~~~~~~~l~i~G~~~~~~------~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~ 243 (335)
T cd03802 172 DYLLFLGRIS--PEKGPHLAIRAARRAGIPLKLAGPVSDPD------YFYREIAPELLDGPDIEYLGEVGGAEKAELLGN 243 (335)
T ss_pred CEEEEEEeec--cccCHHHHHHHHHhcCCeEEEEeCCCCHH------HHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHh
Confidence 3444557663 33445567777777787776654432111 001111111 24689999999874 46788
Q ss_pred CCcceeee--ccCc-hhHHHHHhhCCceeccccccccccceeeeeecceEEEEecCCCCCcCHHHHHHHHHHHhcCcchH
Q 036520 360 PSIGTSLF--HAGW-GSVIETLQFGHSLVVLPLIIDQPLNARLLVDKDLAVQVERKDDGSFTRDGIAKALRLATVSEEGE 436 (473)
Q Consensus 360 ~~~~~~It--HGG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~t~~~l~~~i~~ll~~~~~~ 436 (473)
+++-++-+ +-|. .++.||+++|+|+|+.... .+...+++...|...+ . .++++++|.++++ .+
T Consensus 244 ~d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~----~~~e~i~~~~~g~l~~-----~--~~~l~~~l~~l~~---~~ 309 (335)
T cd03802 244 ARALLFPILWEEPFGLVMIEAMACGTPVIAFRRG----AVPEVVEDGVTGFLVD-----S--VEELAAAVARADR---LD 309 (335)
T ss_pred CcEEEeCCcccCCcchHHHHHHhcCCCEEEeCCC----CchhheeCCCcEEEeC-----C--HHHHHHHHHHHhc---cH
Confidence 88833323 2343 5899999999999987653 2333444333565553 2 8899999999876 32
Q ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHH
Q 036520 437 KLRVRAREAANTFNDKKLHDDYSVRFVEY 465 (473)
Q Consensus 437 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 465 (473)
++++++.. .+.-+.+..++.+++.
T Consensus 310 --~~~~~~~~---~~~~s~~~~~~~~~~~ 333 (335)
T cd03802 310 --RAACRRRA---ERRFSAARMVDDYLAL 333 (335)
T ss_pred --HHHHHHHH---HHhCCHHHHHHHHHHH
Confidence 23333332 2333455555655553
No 80
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.81 E-value=3e-07 Score=87.88 Aligned_cols=161 Identities=11% Similarity=-0.007 Sum_probs=99.0
Q ss_pred cEEEEeecCcccCCHHHHHHHHHHHhcCCCC-EEEEEcCCCCCCCccccCchhhhhhcCC-CceEEecccchHHHhhCCC
Q 036520 284 SVVFVGFGSECKLSKDQVYEIAYGLELSGLP-FLWALRKPEWATDDVDALPLGFADTIRG-KGIVSIGWAPQLEILAHPS 361 (473)
Q Consensus 284 ~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~-~i~~~~~~~~~~~~~~~~p~~~~~~~~~-~nv~~~~~~pq~~ll~~~~ 361 (473)
++|.+--||....-...+..+++++.....+ .++.+..... . +.+.+.... ..+.+.+ .-.+++..++
T Consensus 168 ~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~~~~~i~~a~~-------~-~~i~~~~~~~~~~~~~~--~~~~~m~~aD 237 (347)
T PRK14089 168 GTIAFMPGSRKSEIKRLMPIFKELAKKLEGKEKILVVPSFFK-------G-KDLKEIYGDISEFEISY--DTHKALLEAE 237 (347)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCcEEEEeCCCc-------H-HHHHHHHhcCCCcEEec--cHHHHHHhhh
Confidence 4888888887652223344344444332211 2333332211 0 122222211 2233322 3367889999
Q ss_pred cceeeeccCchhHHHHHhhCCceecccc--ccccccceeeee---ecceEEEEec----CC------CCCcCHHHHHHHH
Q 036520 362 IGTSLFHAGWGSVIETLQFGHSLVVLPL--IIDQPLNARLLV---DKDLAVQVER----KD------DGSFTRDGIAKAL 426 (473)
Q Consensus 362 ~~~~ItHGG~~s~~eal~~GvP~l~~P~--~~DQ~~na~~v~---~~G~G~~l~~----~~------~~~~t~~~l~~~i 426 (473)
+ +|+-.|..|+ |+.++|+|+|+ ++ ..-|+.||++++ ..|++-.+-. ++ .+.+|++.|.+++
T Consensus 238 l--al~~SGT~TL-E~al~g~P~Vv-~Yk~~~lty~iak~lv~~~~igL~Nii~~~~~~~~vvPEllQ~~~t~~~la~~i 313 (347)
T PRK14089 238 F--AFICSGTATL-EAALIGTPFVL-AYKAKAIDYFIAKMFVKLKHIGLANIFFDFLGKEPLHPELLQEFVTVENLLKAY 313 (347)
T ss_pred H--HHhcCcHHHH-HHHHhCCCEEE-EEeCCHHHHHHHHHHHcCCeeehHHHhcCCCcccccCchhhcccCCHHHHHHHH
Confidence 8 9999999999 99999999988 44 457888999988 5566544421 00 1268999999999
Q ss_pred HHHhcCcchHHHHHHHHHHHHHhccCCCcHHHHHHHH
Q 036520 427 RLATVSEEGEKLRVRAREAANTFNDKKLHDDYSVRFV 463 (473)
Q Consensus 427 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 463 (473)
.+ .. ..++++...++++.+. .++++.+++.+.
T Consensus 314 ~~-~~---~~~~~~~~~~l~~~l~-~~a~~~~A~~i~ 345 (347)
T PRK14089 314 KE-MD---REKFFKKSKELREYLK-HGSAKNVAKILK 345 (347)
T ss_pred HH-HH---HHHHHHHHHHHHHHhc-CCHHHHHHHHHh
Confidence 88 33 5678888888888885 355555555443
No 81
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.78 E-value=1.4e-05 Score=78.09 Aligned_cols=154 Identities=13% Similarity=0.136 Sum_probs=83.6
Q ss_pred EEeecCcccCCHHHHHHHHHHHhcCC--CCEEEEEcCCCCCCCccccCchhhh-hhcCCCceEEecccchH---HHhhCC
Q 036520 287 FVGFGSECKLSKDQVYEIAYGLELSG--LPFLWALRKPEWATDDVDALPLGFA-DTIRGKGIVSIGWAPQL---EILAHP 360 (473)
Q Consensus 287 ~vs~Gs~~~~~~~~~~~~~~al~~~~--~~~i~~~~~~~~~~~~~~~~p~~~~-~~~~~~nv~~~~~~pq~---~ll~~~ 360 (473)
++..|+.. ....+..+++++.+.. .+++++-.+... ...-.... .....+++.+.+++++. .++..+
T Consensus 196 i~~~G~~~--~~Kg~~~li~a~~~l~~~~~l~ivG~~~~~-----~~~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~a 268 (363)
T cd04955 196 YLLVGRIV--PENNIDDLIEAFSKSNSGKKLVIVGNADHN-----TPYGKLLKEKAAADPRIIFVGPIYDQELLELLRYA 268 (363)
T ss_pred EEEEeccc--ccCCHHHHHHHHHhhccCceEEEEcCCCCc-----chHHHHHHHHhCCCCcEEEccccChHHHHHHHHhC
Confidence 44567765 3344555666665543 444443332111 11111111 12235689999999885 456667
Q ss_pred CcceeeeccC----c-hhHHHHHhhCCceeccccccccccceeeeeecceEEEEecCCCCCcCHHHHHHHHHHHhcCcch
Q 036520 361 SIGTSLFHAG----W-GSVIETLQFGHSLVVLPLIIDQPLNARLLVDKDLAVQVERKDDGSFTRDGIAKALRLATVSEEG 435 (473)
Q Consensus 361 ~~~~~ItHGG----~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~t~~~l~~~i~~ll~~~~~ 435 (473)
++ ++.+.- . +++.||+++|+|+|+....+ +...++. -|...+.. + .++++|.++++ +
T Consensus 269 d~--~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~----~~e~~~~--~g~~~~~~-----~--~l~~~i~~l~~---~ 330 (363)
T cd04955 269 AL--FYLHGHSVGGTNPSLLEAMAYGCPVLASDNPF----NREVLGD--KAIYFKVG-----D--DLASLLEELEA---D 330 (363)
T ss_pred CE--EEeCCccCCCCChHHHHHHHcCCCEEEecCCc----cceeecC--CeeEecCc-----h--HHHHHHHHHHh---C
Confidence 76 554432 2 57999999999999875442 2233333 23333332 1 29999999999 5
Q ss_pred HHHHHHHHHHHHH-hccCCCcHHHHHHHHHH
Q 036520 436 EKLRVRAREAANT-FNDKKLHDDYSVRFVEY 465 (473)
Q Consensus 436 ~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~ 465 (473)
++.+++..+-+.. ..+.-+.+..++.+++.
T Consensus 331 ~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~ 361 (363)
T cd04955 331 PEEVSAMAKAARERIREKYTWEKIADQYEEL 361 (363)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 5544443333332 22223445555665554
No 82
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.78 E-value=8.8e-06 Score=80.71 Aligned_cols=99 Identities=15% Similarity=0.091 Sum_probs=62.6
Q ss_pred EecccchHHHhhCCCcceeeecc----CchhHHHHHhhCCceeccccccccccceeeeeecceEEEEecCCCCCcCHHHH
Q 036520 347 SIGWAPQLEILAHPSIGTSLFHA----GWGSVIETLQFGHSLVVLPLIIDQPLNARLLVDKDLAVQVERKDDGSFTRDGI 422 (473)
Q Consensus 347 ~~~~~pq~~ll~~~~~~~~ItHG----G~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~t~~~l 422 (473)
+.++.+..+++..+++ ||.-+ =.+++.||+++|+|+|+.-..+ + ..+.+-+-|... . +.+++
T Consensus 288 f~G~~~~~~~~~~~Dv--Fv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~----~-~~v~~~~ng~~~--~-----~~~~~ 353 (462)
T PLN02846 288 YPGRDHADPLFHDYKV--FLNPSTTDVVCTTTAEALAMGKIVVCANHPS----N-EFFKQFPNCRTY--D-----DGKGF 353 (462)
T ss_pred ECCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCcEEEecCCC----c-ceeecCCceEec--C-----CHHHH
Confidence 5566666779988887 88763 3479999999999999986543 2 334444444333 2 57899
Q ss_pred HHHHHHHhcCcchHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHH
Q 036520 423 AKALRLATVSEEGEKLRVRAREAANTFNDKKLHDDYSVRFVEYLK 467 (473)
Q Consensus 423 ~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (473)
.+++.++|++.. ...+.+++ ..-+-+.+++.+++...
T Consensus 354 a~ai~~~l~~~~-~~~~~~a~-------~~~SWe~~~~~l~~~~~ 390 (462)
T PLN02846 354 VRATLKALAEEP-APLTDAQR-------HELSWEAATERFLRVAD 390 (462)
T ss_pred HHHHHHHHccCc-hhHHHHHH-------HhCCHHHHHHHHHHHhc
Confidence 999999998311 12222211 23344556666666554
No 83
>PLN02275 transferase, transferring glycosyl groups
Probab=98.77 E-value=1.3e-05 Score=78.79 Aligned_cols=127 Identities=12% Similarity=-0.019 Sum_probs=73.5
Q ss_pred CCCccEEEEecCCCccChHHHHHHHHHHHhCCC-eEEEEeCCCccccCCCCCCCcccCCCeEEEEecCCccccccccCCC
Q 036520 1 MARKLHVVMLPWSAFGHLMPFFQLSIALAKSGV-KVSFISTPKNIQRLPKPAPESEVAALINFVEFPLPASAALDDKLLL 79 (473)
Q Consensus 1 m~~~~~vl~~~~~~~gH~~p~l~la~~L~~~Gh-~Vt~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~l 79 (473)
|+++-++.++..+-.|.-..+..++..|+++|| +|++++.......... ....++.++.++.+..
T Consensus 1 ~~~~~~~~~~~~~~~g~~~r~~~~~~~l~~~~~~~v~vi~~~~~~~~~~~-----~~~~~v~v~r~~~~~~--------- 66 (371)
T PLN02275 1 MGRRGRAAVVVLGDFGRSPRMQYHALSLARQASFQVDVVAYGGSEPIPAL-----LNHPSIHIHLMVQPRL--------- 66 (371)
T ss_pred CCCccEEEEEEecCCCCCHHHHHHHHHHHhcCCceEEEEEecCCCCCHHH-----hcCCcEEEEECCCccc---------
Confidence 777778888888999999999999999999986 7999986443211111 1124688888863111
Q ss_pred CCCCccCCCCChhhHHHHHHHHhhhhhHHHHH--HHhCCCcEEEEcC-Ccc----hHHHHHHHcCCCeEEEecc
Q 036520 80 PEGAEATVDIPSENIQYLKIAYDLLQHPFKQF--VAQQSVDWIIVDV-MSH----WAGKIAQEYHVPLLLFSAF 146 (473)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--l~~~~pD~vI~D~-~~~----~~~~~A~~lgiP~v~~~~~ 146 (473)
..... .....+.++....... ..+... ++..+||+|++.. ... .+..+++..++|+|..+..
T Consensus 67 ---~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~DvV~~~~~~~~~~~~~~~~~~~~~~~p~v~~~h~ 135 (371)
T PLN02275 67 ---LQRLP-RVLYALALLLKVAIQF-LMLLWFLCVKIPRPDVFLVQNPPSVPTLAVVKLACWLRRAKFVIDWHN 135 (371)
T ss_pred ---ccccc-cchHHHHHHHHHHHHH-HHHHHHHHhhCCCCCEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEcCC
Confidence 00000 1111111221111111 222222 3567999998853 221 3335677889999876553
No 84
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.74 E-value=9.1e-07 Score=86.23 Aligned_cols=131 Identities=13% Similarity=0.122 Sum_probs=80.4
Q ss_pred CcEEEEeecCcc--c-CCHHHHHHHHHHHhcCCCCEEEEEcCCCCCCCccccCchhhhhhcC-CCceEEecccc---hHH
Q 036520 283 RSVVFVGFGSEC--K-LSKDQVYEIAYGLELSGLPFLWALRKPEWATDDVDALPLGFADTIR-GKGIVSIGWAP---QLE 355 (473)
Q Consensus 283 ~~~V~vs~Gs~~--~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~-~~nv~~~~~~p---q~~ 355 (473)
++.|+|++=... . ...+.+..+++++...+.+++++++..... ....-+....... .+|+.+.+-++ ...
T Consensus 201 ~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~p~---~~~i~~~i~~~~~~~~~v~l~~~l~~~~~l~ 277 (365)
T TIGR03568 201 KPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNADAG---SRIINEAIEEYVNEHPNFRLFKSLGQERYLS 277 (365)
T ss_pred CCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCCCC---chHHHHHHHHHhcCCCCEEEECCCChHHHHH
Confidence 348778775433 2 346789999999988776666666432111 0001111111111 45788876554 477
Q ss_pred HhhCCCcceeeeccCchhHHHHHhhCCceeccccccccccceeeeeecceEEEEecCCCCCcCHHHHHHHHHHHhc
Q 036520 356 ILAHPSIGTSLFHAGWGSVIETLQFGHSLVVLPLIIDQPLNARLLVDKDLAVQVERKDDGSFTRDGIAKALRLATV 431 (473)
Q Consensus 356 ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~t~~~l~~~i~~ll~ 431 (473)
++.++++ +||.++.+- .||.+.|+|+|.+- + =.-..+.|-.+.+ . ..+.++|.+++.+++.
T Consensus 278 Ll~~a~~--vitdSSggi-~EA~~lg~Pvv~l~---~----R~e~~~~g~nvl~-v----g~~~~~I~~a~~~~~~ 338 (365)
T TIGR03568 278 LLKNADA--VIGNSSSGI-IEAPSFGVPTINIG---T----RQKGRLRADSVID-V----DPDKEEIVKAIEKLLD 338 (365)
T ss_pred HHHhCCE--EEEcChhHH-HhhhhcCCCEEeec---C----CchhhhhcCeEEE-e----CCCHHHHHHHHHHHhC
Confidence 8889998 999886655 99999999999764 2 1111122332221 1 3478999999999655
No 85
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.72 E-value=7.9e-06 Score=79.89 Aligned_cols=131 Identities=13% Similarity=0.075 Sum_probs=77.6
Q ss_pred EEEEeecCcccCCHHHHHHHHHHHhcCC--CCEEEEEcCCCCCCCccccCchhhhhh-cCCCceEEecccch-----HHH
Q 036520 285 VVFVGFGSECKLSKDQVYEIAYGLELSG--LPFLWALRKPEWATDDVDALPLGFADT-IRGKGIVSIGWAPQ-----LEI 356 (473)
Q Consensus 285 ~V~vs~Gs~~~~~~~~~~~~~~al~~~~--~~~i~~~~~~~~~~~~~~~~p~~~~~~-~~~~nv~~~~~~pq-----~~l 356 (473)
.+++..|.........+..+++++.+.. .+++++ +.+... ..+ ....+. ....++.+.+|+++ .+.
T Consensus 181 ~~i~~~Grl~~~~~k~~~~l~~a~~~~~~~~~l~iv-G~g~~~----~~l-~~~~~~~~l~~~v~f~G~~~~~~~~~~~~ 254 (359)
T PRK09922 181 AVFLYVGRLKFEGQKNVKELFDGLSQTTGEWQLHII-GDGSDF----EKC-KAYSRELGIEQRIIWHGWQSQPWEVVQQK 254 (359)
T ss_pred cEEEEEEEEecccCcCHHHHHHHHHhhCCCeEEEEE-eCCccH----HHH-HHHHHHcCCCCeEEEecccCCcHHHHHHH
Confidence 5566677764323345666777776543 333333 322111 111 011111 12358999998854 334
Q ss_pred hhCCCcceeee--c--cCchhHHHHHhhCCceeccc-cccccccceeeeeecceEEEEecCCCCCcCHHHHHHHHHHHhc
Q 036520 357 LAHPSIGTSLF--H--AGWGSVIETLQFGHSLVVLP-LIIDQPLNARLLVDKDLAVQVERKDDGSFTRDGIAKALRLATV 431 (473)
Q Consensus 357 l~~~~~~~~It--H--GG~~s~~eal~~GvP~l~~P-~~~DQ~~na~~v~~~G~G~~l~~~~~~~~t~~~l~~~i~~ll~ 431 (473)
++.+++ +|. + |--.++.||+++|+|+|+.- ..+ ....+++...|..++.. +.++++++|.++++
T Consensus 255 ~~~~d~--~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g----~~eiv~~~~~G~lv~~~-----d~~~la~~i~~l~~ 323 (359)
T PRK09922 255 IKNVSA--LLLTSKFEGFPMTLLEAMSYGIPCISSDCMSG----PRDIIKPGLNGELYTPG-----NIDEFVGKLNKVIS 323 (359)
T ss_pred HhcCcE--EEECCcccCcChHHHHHHHcCCCEEEeCCCCC----hHHHccCCCceEEECCC-----CHHHHHHHHHHHHh
Confidence 455676 554 3 22479999999999999875 332 22345554568777553 89999999999999
Q ss_pred C
Q 036520 432 S 432 (473)
Q Consensus 432 ~ 432 (473)
+
T Consensus 324 ~ 324 (359)
T PRK09922 324 G 324 (359)
T ss_pred C
Confidence 3
No 86
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.71 E-value=2.5e-06 Score=84.68 Aligned_cols=110 Identities=16% Similarity=0.150 Sum_probs=72.7
Q ss_pred CCCceEEecccch-HHHhhCCCcceee--ec--cCc-hhHHHHHhhCCceeccccccccccceeeeeecceEEEEecCCC
Q 036520 341 RGKGIVSIGWAPQ-LEILAHPSIGTSL--FH--AGW-GSVIETLQFGHSLVVLPLIIDQPLNARLLVDKDLAVQVERKDD 414 (473)
Q Consensus 341 ~~~nv~~~~~~pq-~~ll~~~~~~~~I--tH--GG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~ 414 (473)
..+|+.+.+++++ ..++..+++ +| ++ .|. +.+.||+++|+|+|+.+...+.. .+..|.|..+. .
T Consensus 278 ~~~~V~~~G~v~~~~~~~~~adv--~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~i-----~~~~~~g~lv~-~-- 347 (397)
T TIGR03087 278 ALPGVTVTGSVADVRPYLAHAAV--AVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEGI-----DALPGAELLVA-A-- 347 (397)
T ss_pred cCCCeEEeeecCCHHHHHHhCCE--EEecccccCCcccHHHHHHHcCCCEEecCcccccc-----cccCCcceEeC-C--
Confidence 4568999999986 677888888 55 32 454 47999999999999988643321 12336676664 3
Q ss_pred CCcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHH-hccCCCcHHHHHHHHHHH
Q 036520 415 GSFTRDGIAKALRLATVSEEGEKLRVRAREAANT-FNDKKLHDDYSVRFVEYL 466 (473)
Q Consensus 415 ~~~t~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~ 466 (473)
+.++++++|.++++ |++.++++.+-+.. ..+.-+-+..++.+.+.+
T Consensus 348 ---~~~~la~ai~~ll~---~~~~~~~~~~~ar~~v~~~fsw~~~~~~~~~~l 394 (397)
T TIGR03087 348 ---DPADFAAAILALLA---NPAEREELGQAARRRVLQHYHWPRNLARLDALL 394 (397)
T ss_pred ---CHHHHHHHHHHHHc---CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 78999999999999 66655444333322 222334455555555543
No 87
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=98.71 E-value=5.4e-05 Score=79.37 Aligned_cols=90 Identities=11% Similarity=0.030 Sum_probs=56.9
Q ss_pred CCceEEeccc-ch---HHHhhC-CC-cceeeec---cCc-hhHHHHHhhCCceeccccccccccceeeeeecceEEEEec
Q 036520 342 GKGIVSIGWA-PQ---LEILAH-PS-IGTSLFH---AGW-GSVIETLQFGHSLVVLPLIIDQPLNARLLVDKDLAVQVER 411 (473)
Q Consensus 342 ~~nv~~~~~~-pq---~~ll~~-~~-~~~~ItH---GG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~ 411 (473)
.++|.+.++. +. .+++.. ++ .++||.= =|. -++.||+++|+|+|+.-..+ .+..+++-.-|..++.
T Consensus 618 ~g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVAT~~GG----~~EiV~dg~tGfLVdp 693 (784)
T TIGR02470 618 HGQIRWIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFATRFGG----PLEIIQDGVSGFHIDP 693 (784)
T ss_pred CCeEEEccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEEcCCCC----HHHHhcCCCcEEEeCC
Confidence 3578877764 32 345543 22 2337642 233 58999999999999865543 3334444456888876
Q ss_pred CCCCCcCHHHHHHHHHHHh----cCcchHHHHHHHH
Q 036520 412 KDDGSFTRDGIAKALRLAT----VSEEGEKLRVRAR 443 (473)
Q Consensus 412 ~~~~~~t~~~l~~~i~~ll----~~~~~~~~~~~a~ 443 (473)
. +.++++++|.+++ . +++.+++..
T Consensus 694 ~-----D~eaLA~aL~~ll~kll~---dp~~~~~ms 721 (784)
T TIGR02470 694 Y-----HGEEAAEKIVDFFEKCDE---DPSYWQKIS 721 (784)
T ss_pred C-----CHHHHHHHHHHHHHHhcC---CHHHHHHHH
Confidence 5 7788999998876 4 565555443
No 88
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.70 E-value=7.8e-06 Score=79.67 Aligned_cols=89 Identities=13% Similarity=0.049 Sum_probs=62.0
Q ss_pred CCceEEecccch-HHHhhCCCcceeeec----cCchhHHHHHhhCCceeccccccccccceeeeeecceEEEEecCCCCC
Q 036520 342 GKGIVSIGWAPQ-LEILAHPSIGTSLFH----AGWGSVIETLQFGHSLVVLPLIIDQPLNARLLVDKDLAVQVERKDDGS 416 (473)
Q Consensus 342 ~~nv~~~~~~pq-~~ll~~~~~~~~ItH----GG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~ 416 (473)
.+++.+.++..+ ..++..+++ +|+- |-.+++.||+++|+|+|+....+ ....+++ +.|.....
T Consensus 248 ~~~v~~~g~~~~~~~~~~~adi--~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~----~~~~i~~-~~~~~~~~----- 315 (358)
T cd03812 248 EDKVIFLGVRNDVPELLQAMDV--FLFPSLYEGLPLVLIEAQASGLPCILSDTIT----KEVDLTD-LVKFLSLD----- 315 (358)
T ss_pred CCcEEEecccCCHHHHHHhcCE--EEecccccCCCHHHHHHHHhCCCEEEEcCCc----hhhhhcc-CccEEeCC-----
Confidence 357888887544 788888888 5542 34579999999999999876544 2223344 45544433
Q ss_pred cCHHHHHHHHHHHhcCcchHHHHHHHHHH
Q 036520 417 FTRDGIAKALRLATVSEEGEKLRVRAREA 445 (473)
Q Consensus 417 ~t~~~l~~~i~~ll~~~~~~~~~~~a~~~ 445 (473)
-+.++++++|.++++ +++.+++...-
T Consensus 316 ~~~~~~a~~i~~l~~---~~~~~~~~~~~ 341 (358)
T cd03812 316 ESPEIWAEEILKLKS---EDRRERSSESI 341 (358)
T ss_pred CCHHHHHHHHHHHHh---Ccchhhhhhhh
Confidence 257999999999999 67766555433
No 89
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.70 E-value=7.8e-06 Score=79.60 Aligned_cols=106 Identities=14% Similarity=0.143 Sum_probs=68.4
Q ss_pred CCCceEEecccchH---HHhhCCCcceeeec----cCchhHHHHHhhCCceeccccccccccceeeeeecceEEEEecCC
Q 036520 341 RGKGIVSIGWAPQL---EILAHPSIGTSLFH----AGWGSVIETLQFGHSLVVLPLIIDQPLNARLLVDKDLAVQVERKD 413 (473)
Q Consensus 341 ~~~nv~~~~~~pq~---~ll~~~~~~~~ItH----GG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~ 413 (473)
..+++.+.+++|+. .++..+++ +|.- |..+++.||+++|+|+|+.... .....+.+ .|..+..
T Consensus 251 ~~~~v~~~g~~~~~~~~~~~~~~d~--~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~----~~~e~~~~--~~~~~~~-- 320 (365)
T cd03809 251 LGDRVRFLGYVSDEELAALYRGARA--FVFPSLYEGFGLPVLEAMACGTPVIASNIS----SLPEVAGD--AALYFDP-- 320 (365)
T ss_pred CCCeEEECCCCChhHHHHHHhhhhh--hcccchhccCCCCHHHHhcCCCcEEecCCC----CccceecC--ceeeeCC--
Confidence 34589999999874 56788887 4422 3346899999999999986542 22222322 3444544
Q ss_pred CCCcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHhccCCCcHHHHHHH
Q 036520 414 DGSFTRDGIAKALRLATVSEEGEKLRVRAREAANTFNDKKLHDDYSVRF 462 (473)
Q Consensus 414 ~~~~t~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 462 (473)
-+.+++.++|.+++. |++.+.++.+-+....+.-+-+..++.+
T Consensus 321 ---~~~~~~~~~i~~l~~---~~~~~~~~~~~~~~~~~~~sw~~~~~~~ 363 (365)
T cd03809 321 ---LDPEALAAAIERLLE---DPALREELRERGLARAKRFSWEKTARRT 363 (365)
T ss_pred ---CCHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 378999999999998 7777666655554433333334444433
No 90
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.68 E-value=1.7e-05 Score=77.93 Aligned_cols=111 Identities=9% Similarity=0.018 Sum_probs=71.7
Q ss_pred CceEEecccch-HHHhhCCCcceee--ec--cCchhHHHHHhhCCceeccccccccccceeeeeecceEEEEecCCCCCc
Q 036520 343 KGIVSIGWAPQ-LEILAHPSIGTSL--FH--AGWGSVIETLQFGHSLVVLPLIIDQPLNARLLVDKDLAVQVERKDDGSF 417 (473)
Q Consensus 343 ~nv~~~~~~pq-~~ll~~~~~~~~I--tH--GG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~ 417 (473)
.++.+.++..+ ..++..+++ +| ++ |--.++.||+++|+|+|+.... .+...+++-..|..++..
T Consensus 255 ~~v~~~g~~~~~~~~~~~adi--~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~----g~~e~i~~~~~g~~~~~~----- 323 (374)
T TIGR03088 255 HLVWLPGERDDVPALMQALDL--FVLPSLAEGISNTILEAMASGLPVIATAVG----GNPELVQHGVTGALVPPG----- 323 (374)
T ss_pred ceEEEcCCcCCHHHHHHhcCE--EEeccccccCchHHHHHHHcCCCEEEcCCC----CcHHHhcCCCceEEeCCC-----
Confidence 35666665544 788899998 65 33 3347999999999999996653 344455555567777654
Q ss_pred CHHHHHHHHHHHhcCcchHHHHHHHH-HHHHHhccCCCcHHHHHHHHHHHH
Q 036520 418 TRDGIAKALRLATVSEEGEKLRVRAR-EAANTFNDKKLHDDYSVRFVEYLK 467 (473)
Q Consensus 418 t~~~l~~~i~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~ 467 (473)
+.++++++|.++++ +++.++... +.++.+.+.-+.+..++.+++...
T Consensus 324 d~~~la~~i~~l~~---~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~y~ 371 (374)
T TIGR03088 324 DAVALARALQPYVS---DPAARRAHGAAGRARAEQQFSINAMVAAYAGLYD 371 (374)
T ss_pred CHHHHHHHHHHHHh---CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 78899999999998 555443332 222233333345555666665543
No 91
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.65 E-value=3.5e-05 Score=76.09 Aligned_cols=167 Identities=13% Similarity=0.136 Sum_probs=92.8
Q ss_pred EEEEeecCcccCCHHHHHHHHHHHhcC--CCCEEEEEcCCCCCCCccccCchhhhhhc-----CCCceEE-ecccch---
Q 036520 285 VVFVGFGSECKLSKDQVYEIAYGLELS--GLPFLWALRKPEWATDDVDALPLGFADTI-----RGKGIVS-IGWAPQ--- 353 (473)
Q Consensus 285 ~V~vs~Gs~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~p~~~~~~~-----~~~nv~~-~~~~pq--- 353 (473)
.+++..|... ..+.+..+++++... +.+++++.++.... .+-+.+.+.. ...++.+ ..++++
T Consensus 202 ~~i~~~Grl~--~~Kg~~~li~a~~~l~~~~~l~i~g~g~~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 274 (388)
T TIGR02149 202 PYILFVGRIT--RQKGVPHLLDAVHYIPKDVQVVLCAGAPDTP-----EVAEEVRQAVALLDRNRTGIIWINKMLPKEEL 274 (388)
T ss_pred eEEEEEcccc--cccCHHHHHHHHHHHhhcCcEEEEeCCCCcH-----HHHHHHHHHHHHhccccCceEEecCCCCHHHH
Confidence 5666667765 334455666666554 45555554433211 0111111111 1234554 356765
Q ss_pred HHHhhCCCcceeeec----cCchhHHHHHhhCCceeccccccccccceeeeeecceEEEEecCC-CCCcCHHHHHHHHHH
Q 036520 354 LEILAHPSIGTSLFH----AGWGSVIETLQFGHSLVVLPLIIDQPLNARLLVDKDLAVQVERKD-DGSFTRDGIAKALRL 428 (473)
Q Consensus 354 ~~ll~~~~~~~~ItH----GG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~-~~~~t~~~l~~~i~~ 428 (473)
..++..+++ +|.= |...++.||+++|+|+|+.... .....+++.+.|..++..+ +..-..+++.++|.+
T Consensus 275 ~~~~~~aDv--~v~ps~~e~~g~~~lEA~a~G~PvI~s~~~----~~~e~i~~~~~G~~~~~~~~~~~~~~~~l~~~i~~ 348 (388)
T TIGR02149 275 VELLSNAEV--FVCPSIYEPLGIVNLEAMACGTPVVASATG----GIPEVVVDGETGFLVPPDNSDADGFQAELAKAINI 348 (388)
T ss_pred HHHHHhCCE--EEeCCccCCCChHHHHHHHcCCCEEEeCCC----CHHHHhhCCCceEEcCCCCCcccchHHHHHHHHHH
Confidence 566888888 6642 2235789999999999986543 3445555556788776641 001123899999999
Q ss_pred HhcCcchHHHHHHHHHHHHH-hccCCCcHHHHHHHHHHHH
Q 036520 429 ATVSEEGEKLRVRAREAANT-FNDKKLHDDYSVRFVEYLK 467 (473)
Q Consensus 429 ll~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~ 467 (473)
+++ +++.++++.+-+.. ..+.-+.+..++.+++..+
T Consensus 349 l~~---~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~y~ 385 (388)
T TIGR02149 349 LLA---DPELAKKMGIAGRKRAEEEFSWGSIAKKTVEMYR 385 (388)
T ss_pred HHh---CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 998 66555444333322 2223344555566665544
No 92
>PLN00142 sucrose synthase
Probab=98.63 E-value=2.4e-05 Score=82.04 Aligned_cols=89 Identities=12% Similarity=0.034 Sum_probs=55.3
Q ss_pred CceEEecc----cchHHHhh----CCCcceeeec---cCc-hhHHHHHhhCCceeccccccccccceeeeeecceEEEEe
Q 036520 343 KGIVSIGW----APQLEILA----HPSIGTSLFH---AGW-GSVIETLQFGHSLVVLPLIIDQPLNARLLVDKDLAVQVE 410 (473)
Q Consensus 343 ~nv~~~~~----~pq~~ll~----~~~~~~~ItH---GG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~ 410 (473)
++|.+.+. .+..+++. .+++ ||.- -|. .++.||+++|+|+|+.... .....+++-.-|..++
T Consensus 642 ~~V~flG~~~~~~~~~eLyr~iadaaDV--fVlPS~~EgFGLvvLEAMA~GlPVVATdvG----G~~EIV~dG~tG~LV~ 715 (815)
T PLN00142 642 GQFRWIAAQTNRVRNGELYRYIADTKGA--FVQPALYEAFGLTVVEAMTCGLPTFATCQG----GPAEIIVDGVSGFHID 715 (815)
T ss_pred CcEEEcCCcCCcccHHHHHHHHHhhCCE--EEeCCcccCCCHHHHHHHHcCCCEEEcCCC----CHHHHhcCCCcEEEeC
Confidence 45665443 33345553 2344 6643 454 4899999999999986543 3344454445688887
Q ss_pred cCCCCCcCHHHHHHHHHHH----hcCcchHHHHHHHHHH
Q 036520 411 RKDDGSFTRDGIAKALRLA----TVSEEGEKLRVRAREA 445 (473)
Q Consensus 411 ~~~~~~~t~~~l~~~i~~l----l~~~~~~~~~~~a~~~ 445 (473)
.. +.++++++|.++ +. +++.+++..+-
T Consensus 716 P~-----D~eaLA~aI~~lLekLl~---Dp~lr~~mg~~ 746 (815)
T PLN00142 716 PY-----HGDEAANKIADFFEKCKE---DPSYWNKISDA 746 (815)
T ss_pred CC-----CHHHHHHHHHHHHHHhcC---CHHHHHHHHHH
Confidence 65 677888887665 45 66666554443
No 93
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=98.63 E-value=5.7e-05 Score=75.03 Aligned_cols=113 Identities=12% Similarity=0.108 Sum_probs=72.8
Q ss_pred CCceEEecccch---HHHhhCCCcceeee--c-------cCc-hhHHHHHhhCCceeccccccccccceeeeeecceEEE
Q 036520 342 GKGIVSIGWAPQ---LEILAHPSIGTSLF--H-------AGW-GSVIETLQFGHSLVVLPLIIDQPLNARLLVDKDLAVQ 408 (473)
Q Consensus 342 ~~nv~~~~~~pq---~~ll~~~~~~~~It--H-------GG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~ 408 (473)
.+++.+.+|+|+ .+++..+++ ||. + -|. ++++||+++|+|+|+....+ ....+++-..|..
T Consensus 278 ~~~V~~~G~~~~~el~~~l~~aDv--~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~g----~~E~v~~~~~G~l 351 (406)
T PRK15427 278 EDVVEMPGFKPSHEVKAMLDDADV--FLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSG----IPELVEADKSGWL 351 (406)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCCC----chhhhcCCCceEE
Confidence 457999999997 457788888 554 2 244 67999999999999875432 3334444456877
Q ss_pred EecCCCCCcCHHHHHHHHHHHhcCcchHHHH-HHHHHHHHHhccCCCcHHHHHHHHHHHH
Q 036520 409 VERKDDGSFTRDGIAKALRLATVSEEGEKLR-VRAREAANTFNDKKLHDDYSVRFVEYLK 467 (473)
Q Consensus 409 l~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (473)
++.. +.++++++|.++++. +++.+ +-.+.-++...+.-+.+..++.+.+.++
T Consensus 352 v~~~-----d~~~la~ai~~l~~~--d~~~~~~~~~~ar~~v~~~f~~~~~~~~l~~~~~ 404 (406)
T PRK15427 352 VPEN-----DAQALAQRLAAFSQL--DTDELAPVVKRAREKVETDFNQQVINRELASLLQ 404 (406)
T ss_pred eCCC-----CHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 7654 789999999999972 23322 2222222233333344566666666554
No 94
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=98.54 E-value=7.6e-05 Score=73.35 Aligned_cols=110 Identities=15% Similarity=0.113 Sum_probs=69.2
Q ss_pred CCceEEeccc--ch---HHHhhCCCcceeeecc---C-chhHHHHHhhCCceeccccccccccceeeeeecceEEEEecC
Q 036520 342 GKGIVSIGWA--PQ---LEILAHPSIGTSLFHA---G-WGSVIETLQFGHSLVVLPLIIDQPLNARLLVDKDLAVQVERK 412 (473)
Q Consensus 342 ~~nv~~~~~~--pq---~~ll~~~~~~~~ItHG---G-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~ 412 (473)
.+++.+..+. ++ ..+++.+++ |+.-. | ..++.||+++|+|+|+....+ ....+.+-+.|...+
T Consensus 251 ~~~v~~~~~~~~~~~~~~~~~~~ad~--~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~~----~~~~i~~~~~g~~~~-- 322 (372)
T cd03792 251 DPDIHVLTLPPVSDLEVNALQRASTV--VLQKSIREGFGLTVTEALWKGKPVIAGPVGG----IPLQIEDGETGFLVD-- 322 (372)
T ss_pred CCCeEEEecCCCCHHHHHHHHHhCeE--EEeCCCccCCCHHHHHHHHcCCCEEEcCCCC----chhhcccCCceEEeC--
Confidence 3467777776 43 467788887 77533 2 359999999999999876432 233344445666443
Q ss_pred CCCCcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHH-hccCCCcHHHHHHHHHHHH
Q 036520 413 DDGSFTRDGIAKALRLATVSEEGEKLRVRAREAANT-FNDKKLHDDYSVRFVEYLK 467 (473)
Q Consensus 413 ~~~~~t~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~ 467 (473)
+.++++.+|.++++ +++.++++.+-+.. ..+.-+.+..+..+.+.+.
T Consensus 323 -----~~~~~a~~i~~ll~---~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~~~ 370 (372)
T cd03792 323 -----TVEEAAVRILYLLR---DPELRRKMGANAREHVRENFLITRHLKDYLYLIS 370 (372)
T ss_pred -----CcHHHHHHHHHHHc---CHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 34577889999998 66666555444333 2333345666666666554
No 95
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=98.51 E-value=2.8e-05 Score=75.71 Aligned_cols=136 Identities=12% Similarity=0.072 Sum_probs=89.4
Q ss_pred EEEeecCcccCCHHHHHHHHHHHhcCCCCEEEEEcCCCCCCCccccCchhhhhhcCCCceEEecccch---HHHhhCCCc
Q 036520 286 VFVGFGSECKLSKDQVYEIAYGLELSGLPFLWALRKPEWATDDVDALPLGFADTIRGKGIVSIGWAPQ---LEILAHPSI 362 (473)
Q Consensus 286 V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq---~~ll~~~~~ 362 (473)
.++..|++. .......+++++...+.+++++-.+... +.+.+ ...+|+.+.+++|+ ..+++.+++
T Consensus 197 ~il~~G~~~--~~K~~~~li~a~~~~~~~l~ivG~g~~~---------~~l~~-~~~~~V~~~g~~~~~~~~~~~~~ad~ 264 (351)
T cd03804 197 YYLSVGRLV--PYKRIDLAIEAFNKLGKRLVVIGDGPEL---------DRLRA-KAGPNVTFLGRVSDEELRDLYARARA 264 (351)
T ss_pred EEEEEEcCc--cccChHHHHHHHHHCCCcEEEEECChhH---------HHHHh-hcCCCEEEecCCCHHHHHHHHHhCCE
Confidence 345567765 3455666777777777776665443211 11111 23569999999998 457888888
Q ss_pred ceeeeccCc-hhHHHHHhhCCceeccccccccccceeeeeecceEEEEecCCCCCcCHHHHHHHHHHHhcCcchH-HHHH
Q 036520 363 GTSLFHAGW-GSVIETLQFGHSLVVLPLIIDQPLNARLLVDKDLAVQVERKDDGSFTRDGIAKALRLATVSEEGE-KLRV 440 (473)
Q Consensus 363 ~~~ItHGG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~t~~~l~~~i~~ll~~~~~~-~~~~ 440 (473)
-++-+.-|. .++.||+++|+|+|+.... .....+++.+.|..++.. +.++++++|.++++ ++ ..++
T Consensus 265 ~v~ps~e~~g~~~~Eama~G~Pvi~~~~~----~~~e~i~~~~~G~~~~~~-----~~~~la~~i~~l~~---~~~~~~~ 332 (351)
T cd03804 265 FLFPAEEDFGIVPVEAMASGTPVIAYGKG----GALETVIDGVTGILFEEQ-----TVESLAAAVERFEK---NEDFDPQ 332 (351)
T ss_pred EEECCcCCCCchHHHHHHcCCCEEEeCCC----CCcceeeCCCCEEEeCCC-----CHHHHHHHHHHHHh---CcccCHH
Confidence 333344444 4678999999999997643 344556666788888764 78899999999998 44 3444
Q ss_pred HHHHH
Q 036520 441 RAREA 445 (473)
Q Consensus 441 ~a~~~ 445 (473)
++++.
T Consensus 333 ~~~~~ 337 (351)
T cd03804 333 AIRAH 337 (351)
T ss_pred HHHHH
Confidence 44443
No 96
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.50 E-value=2.5e-05 Score=74.47 Aligned_cols=307 Identities=17% Similarity=0.197 Sum_probs=172.6
Q ss_pred CccChHHHHHHHHHHHhC--CCeEEEEe-CCCccccCCCCCCCcccCCCeEEEEecCCccccccccCCCCCCCccCCCCC
Q 036520 14 AFGHLMPFFQLSIALAKS--GVKVSFIS-TPKNIQRLPKPAPESEVAALINFVEFPLPASAALDDKLLLPEGAEATVDIP 90 (473)
Q Consensus 14 ~~gH~~p~l~la~~L~~~--Gh~Vt~~~-~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~ 90 (473)
+.|-++...+|.++|.++ ++.|++-+ ++...+.+.+.. ...+..+-+|+ +.+
T Consensus 58 SVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~-----~~~v~h~YlP~--------------------D~~ 112 (419)
T COG1519 58 SVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALF-----GDSVIHQYLPL--------------------DLP 112 (419)
T ss_pred chhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHc-----CCCeEEEecCc--------------------Cch
Confidence 669999999999999998 78887766 455454444321 12344444441 111
Q ss_pred hhhHHHHHHHHhhhhhHHHHHHHhCCCcEEEEcCCc--chHHHHHHHcCCCeEEEecchhHHHHHHhchhhhhcCCCCCC
Q 036520 91 SENIQYLKIAYDLLQHPFKQFVAQQSVDWIIVDVMS--HWAGKIAQEYHVPLLLFSAFSAAAFQFIANPECLVGDGQKRV 168 (473)
Q Consensus 91 ~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~--~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (473)
..+.++++.++||++|.---. +.-+.-+++.|||.+.+..--.
T Consensus 113 ---------------~~v~rFl~~~~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNaRLS-------------------- 157 (419)
T COG1519 113 ---------------IAVRRFLRKWRPKLLIIMETELWPNLINELKRRGIPLVLVNARLS-------------------- 157 (419)
T ss_pred ---------------HHHHHHHHhcCCCEEEEEeccccHHHHHHHHHcCCCEEEEeeeec--------------------
Confidence 134677888999976644333 3444568899999998633000
Q ss_pred CCCCccccCCCccccCCCccccccccccccccccccCCCCch-hhHHHHHHhhccccEEEEcCCchhhhHHHHHHHhhcC
Q 036520 169 RPSAESLTSVPEWVDFPSSVALRTFDAIGMHHGFYGMNASGI-TDAHRTAEILHSCQAMAIRSCPEFEGEYLNLLEKLTG 247 (473)
Q Consensus 169 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~~ 247 (473)
.+.-..+ ..-.-....+...++++..+-.+-+. ....--
T Consensus 158 -----------------------------------~rS~~~y~k~~~~~~~~~~~i~li~aQse~D~~R-----f~~LGa 197 (419)
T COG1519 158 -----------------------------------DRSFARYAKLKFLARLLFKNIDLILAQSEEDAQR-----FRSLGA 197 (419)
T ss_pred -----------------------------------hhhhHHHHHHHHHHHHHHHhcceeeecCHHHHHH-----HHhcCC
Confidence 0000011 11112334556677777776544442 122222
Q ss_pred CCeEEeeccCCCCCCCCCCCCchh---hhhccccCCCCCcEEEEeecCcccCCHHHHHHHHHHHhc--CCCCEEEEEcCC
Q 036520 248 KPVIPVGLLTPEPNSAKGRDHQIS---KIFQWLDEQKPRSVVFVGFGSECKLSKDQVYEIAYGLEL--SGLPFLWALRKP 322 (473)
Q Consensus 248 ~~~~~vGp~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~--~~~~~i~~~~~~ 322 (473)
+++...|-+-.+.... +.... .+...++.. ..+.|..+|.. ...+..-....++.+ .+...||+=+-.
T Consensus 198 ~~v~v~GNlKfd~~~~---~~~~~~~~~~r~~l~~~---r~v~iaaSTH~-GEeei~l~~~~~l~~~~~~~llIlVPRHp 270 (419)
T COG1519 198 KPVVVTGNLKFDIEPP---PQLAAELAALRRQLGGH---RPVWVAASTHE-GEEEIILDAHQALKKQFPNLLLILVPRHP 270 (419)
T ss_pred cceEEecceeecCCCC---hhhHHHHHHHHHhcCCC---CceEEEecCCC-chHHHHHHHHHHHHhhCCCceEEEecCCh
Confidence 3467777665443332 11121 223333322 25666556643 233333334444433 234566654433
Q ss_pred CCCCC---------------ccccCchhhhhhcCCCceEEecccch-HHHhhCCCcc----eeeeccCchhHHHHHhhCC
Q 036520 323 EWATD---------------DVDALPLGFADTIRGKGIVSIGWAPQ-LEILAHPSIG----TSLFHAGWGSVIETLQFGH 382 (473)
Q Consensus 323 ~~~~~---------------~~~~~p~~~~~~~~~~nv~~~~~~pq-~~ll~~~~~~----~~ItHGG~~s~~eal~~Gv 382 (473)
++.++ +..+.|. .+-++++.+-+-- ..+++-+++. =++-+||.| ..|++++|+
T Consensus 271 ERf~~v~~l~~~~gl~~~~rS~~~~~~------~~tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN-~LEpa~~~~ 343 (419)
T COG1519 271 ERFKAVENLLKRKGLSVTRRSQGDPPF------SDTDVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHN-PLEPAAFGT 343 (419)
T ss_pred hhHHHHHHHHHHcCCeEEeecCCCCCC------CCCcEEEEecHhHHHHHHhhccEEEECCcccCCCCCC-hhhHHHcCC
Confidence 22100 0000010 1224555444432 3444444431 145699998 789999999
Q ss_pred ceeccccccccccceeeeeecceEEEEecCCCCCcCHHHHHHHHHHHhcCcchHHHHHHHHH
Q 036520 383 SLVVLPLIIDQPLNARLLVDKDLAVQVERKDDGSFTRDGIAKALRLATVSEEGEKLRVRARE 444 (473)
Q Consensus 383 P~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~a~~ 444 (473)
|+|.=|....|..-++++++.|.|+.++ +.+.|.+++..++. |+..+++..+
T Consensus 344 pvi~Gp~~~Nf~ei~~~l~~~ga~~~v~-------~~~~l~~~v~~l~~---~~~~r~~~~~ 395 (419)
T COG1519 344 PVIFGPYTFNFSDIAERLLQAGAGLQVE-------DADLLAKAVELLLA---DEDKREAYGR 395 (419)
T ss_pred CEEeCCccccHHHHHHHHHhcCCeEEEC-------CHHHHHHHHHHhcC---CHHHHHHHHH
Confidence 9999999999999999999999999885 26788888888888 5555555533
No 97
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.46 E-value=0.0003 Score=73.62 Aligned_cols=111 Identities=15% Similarity=0.094 Sum_probs=72.4
Q ss_pred CCceEEecccch-HHHhhCCCcceeee---ccCc-hhHHHHHhhCCceeccccccccccceeeeeecceEEEEecCCCCC
Q 036520 342 GKGIVSIGWAPQ-LEILAHPSIGTSLF---HAGW-GSVIETLQFGHSLVVLPLIIDQPLNARLLVDKDLAVQVERKDDGS 416 (473)
Q Consensus 342 ~~nv~~~~~~pq-~~ll~~~~~~~~It---HGG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~ 416 (473)
.++|.+.+|.++ ..+|..+++ ||. +.|. +++.||+++|+|+|+.... .....+++-..|..++.. .
T Consensus 573 ~~~V~flG~~~dv~~ll~aaDv--~VlpS~~Egfp~vlLEAMA~G~PVVat~~g----G~~EiV~dg~~GlLv~~~---d 643 (694)
T PRK15179 573 GERILFTGLSRRVGYWLTQFNA--FLLLSRFEGLPNVLIEAQFSGVPVVTTLAG----GAGEAVQEGVTGLTLPAD---T 643 (694)
T ss_pred CCcEEEcCCcchHHHHHHhcCE--EEeccccccchHHHHHHHHcCCeEEEECCC----ChHHHccCCCCEEEeCCC---C
Confidence 458899999876 778888888 554 5564 7999999999999997653 233445554568888765 4
Q ss_pred cCHHHHHHHHHHHhcC-cchHHHHHHHHHHHHHhccCCCcHHHHHHHHH
Q 036520 417 FTRDGIAKALRLATVS-EEGEKLRVRAREAANTFNDKKLHDDYSVRFVE 464 (473)
Q Consensus 417 ~t~~~l~~~i~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 464 (473)
.+.+++.+++.+++.. ..++.+++++++.... .-+.+..++.+.+
T Consensus 644 ~~~~~La~aL~~ll~~l~~~~~l~~~ar~~a~~---~FS~~~~~~~~~~ 689 (694)
T PRK15179 644 VTAPDVAEALARIHDMCAADPGIARKAADWASA---RFSLNQMIASTVR 689 (694)
T ss_pred CChHHHHHHHHHHHhChhccHHHHHHHHHHHHH---hCCHHHHHHHHHH
Confidence 5666777777665541 1156777776655432 2233444454444
No 98
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=98.46 E-value=0.00055 Score=69.69 Aligned_cols=134 Identities=13% Similarity=0.015 Sum_probs=72.9
Q ss_pred cEEEEeecCcccC-CHHHHHHHHHHHhcCCCCEEEEEcCCCCCCCccccCchhhhhhcC--CCceEEecccch---HHHh
Q 036520 284 SVVFVGFGSECKL-SKDQVYEIAYGLELSGLPFLWALRKPEWATDDVDALPLGFADTIR--GKGIVSIGWAPQ---LEIL 357 (473)
Q Consensus 284 ~~V~vs~Gs~~~~-~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~--~~nv~~~~~~pq---~~ll 357 (473)
..+++..|.+... ..+.+...+..+.+.+.+++++-.+.. ..-+.+.+..+ ..|+.+..-.++ ..++
T Consensus 296 ~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 368 (476)
T cd03791 296 APLFGFVGRLTEQKGIDLLLEALPELLELGGQLVILGSGDP-------EYEEALRELAARYPGRVAVLIGYDEALAHLIY 368 (476)
T ss_pred CCEEEEEeeccccccHHHHHHHHHHHHHcCcEEEEEecCCH-------HHHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Confidence 3566667776632 223333334444444555555433321 01111211111 347765433333 3567
Q ss_pred hCCCcceeeec---cCc-hhHHHHHhhCCceecccccc--ccccceeeeeecceEEEEecCCCCCcCHHHHHHHHHHHhc
Q 036520 358 AHPSIGTSLFH---AGW-GSVIETLQFGHSLVVLPLII--DQPLNARLLVDKDLAVQVERKDDGSFTRDGIAKALRLATV 431 (473)
Q Consensus 358 ~~~~~~~~ItH---GG~-~s~~eal~~GvP~l~~P~~~--DQ~~na~~v~~~G~G~~l~~~~~~~~t~~~l~~~i~~ll~ 431 (473)
+.+++ +|.- -|. .+.+||+++|+|+|+....+ |--.+.....+.|.|..++.. +.+++.++|.++++
T Consensus 369 ~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~~~G~~~~~~-----~~~~l~~~i~~~l~ 441 (476)
T cd03791 369 AGADF--FLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTGEGTGFVFEGY-----NADALLAALRRALA 441 (476)
T ss_pred HhCCE--EECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCCCCCeEEeCCC-----CHHHHHHHHHHHHH
Confidence 78887 6632 122 47899999999999876532 222111111133578888764 78999999999886
No 99
>PLN02949 transferase, transferring glycosyl groups
Probab=98.42 E-value=0.0021 Score=64.70 Aligned_cols=111 Identities=14% Similarity=0.104 Sum_probs=66.3
Q ss_pred CCceEEecccch---HHHhhCCCcceeee---ccCc-hhHHHHHhhCCceeccccccccccceeeeeec--c-eEEEEec
Q 036520 342 GKGIVSIGWAPQ---LEILAHPSIGTSLF---HAGW-GSVIETLQFGHSLVVLPLIIDQPLNARLLVDK--D-LAVQVER 411 (473)
Q Consensus 342 ~~nv~~~~~~pq---~~ll~~~~~~~~It---HGG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~--G-~G~~l~~ 411 (473)
.+++.+.+++|+ ..+|..+++ +|+ +-|. .++.||+++|+|+|+....+- ....+.+. | .|...
T Consensus 334 ~~~V~f~g~v~~~el~~ll~~a~~--~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp---~~eIV~~~~~g~tG~l~-- 406 (463)
T PLN02949 334 DGDVEFHKNVSYRDLVRLLGGAVA--GLHSMIDEHFGISVVEYMAAGAVPIAHNSAGP---KMDIVLDEDGQQTGFLA-- 406 (463)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCcE--EEeCCccCCCChHHHHHHHcCCcEEEeCCCCC---cceeeecCCCCcccccC--
Confidence 458999999986 456778887 663 2333 379999999999999865431 01111111 2 23222
Q ss_pred CCCCCcCHHHHHHHHHHHhcCc-c-hHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHH
Q 036520 412 KDDGSFTRDGIAKALRLATVSE-E-GEKLRVRAREAANTFNDKKLHDDYSVRFVEYLKI 468 (473)
Q Consensus 412 ~~~~~~t~~~l~~~i~~ll~~~-~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (473)
-+.++++++|.+++++. + ..++.+++++..+. =+.+...+.+.+.+..
T Consensus 407 -----~~~~~la~ai~~ll~~~~~~r~~m~~~ar~~~~~----FS~e~~~~~~~~~i~~ 456 (463)
T PLN02949 407 -----TTVEEYADAILEVLRMRETERLEIAAAARKRANR----FSEQRFNEDFKDAIRP 456 (463)
T ss_pred -----CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH----cCHHHHHHHHHHHHHH
Confidence 17889999999999731 0 11344555544333 2345555666655544
No 100
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.41 E-value=0.00052 Score=67.46 Aligned_cols=109 Identities=17% Similarity=0.112 Sum_probs=65.7
Q ss_pred CCceEEecccch---HHHhhCCCcceee------eccCc-hhHHHHHhhCCceeccccccccccceeeeeecceEEEEec
Q 036520 342 GKGIVSIGWAPQ---LEILAHPSIGTSL------FHAGW-GSVIETLQFGHSLVVLPLIIDQPLNARLLVDKDLAVQVER 411 (473)
Q Consensus 342 ~~nv~~~~~~pq---~~ll~~~~~~~~I------tHGG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~ 411 (473)
.+||.+.+++|+ ...+.++++.++- +.++. +.+.|++++|+|+|+.++.. .++..+ |..+..
T Consensus 253 ~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~~~-------~~~~~~-~~~~~~ 324 (373)
T cd04950 253 LPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPLPE-------VRRYED-EVVLIA 324 (373)
T ss_pred CCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCcHH-------HHhhcC-cEEEeC
Confidence 469999999986 4567888884332 23333 46899999999999876421 112223 333332
Q ss_pred CCCCCcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHH
Q 036520 412 KDDGSFTRDGIAKALRLATVSEEGEKLRVRAREAANTFNDKKLHDDYSVRFVEYLKI 468 (473)
Q Consensus 412 ~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (473)
-+.+++.++|.+++.++.....++ +++ ..+.-+-+..++.+.+.+.+
T Consensus 325 -----~d~~~~~~ai~~~l~~~~~~~~~~-~~~----~~~~~sW~~~a~~~~~~l~~ 371 (373)
T cd04950 325 -----DDPEEFVAAIEKALLEDGPARERR-RLR----LAAQNSWDARAAEMLEALQE 371 (373)
T ss_pred -----CCHHHHHHHHHHHHhcCCchHHHH-HHH----HHHHCCHHHHHHHHHHHHHh
Confidence 278999999999876321222222 211 22333456666777766654
No 101
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.39 E-value=0.00024 Score=71.85 Aligned_cols=268 Identities=13% Similarity=0.080 Sum_probs=136.8
Q ss_pred hhhHHHHHHHhCCCcEEEE-cC--CcchHHHHHHHcCC--CeEEEecchhHHHHHHhchhhhhcCCCCCCCCCCccccCC
Q 036520 104 LQHPFKQFVAQQSVDWIIV-DV--MSHWAGKIAQEYHV--PLLLFSAFSAAAFQFIANPECLVGDGQKRVRPSAESLTSV 178 (473)
Q Consensus 104 ~~~~l~~ll~~~~pD~vI~-D~--~~~~~~~~A~~lgi--P~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (473)
..+.+.+.+++.+||++|. |. |...-+..+++.|+ |.+.+.+ |
T Consensus 298 ~~~~l~~~i~~~kPD~vIlID~PgFNlrLAK~lkk~Gi~ipviyYVs--------------------------------P 345 (608)
T PRK01021 298 RYRKLYKTILKTNPRTVICIDFPDFHFLLIKKLRKRGYKGKIVHYVC--------------------------------P 345 (608)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEEC--------------------------------c
Confidence 4556677778889998775 85 45556677889996 9886533 1
Q ss_pred CccccCCCccccccccccccccccccCCCCchhhHHHHHHhhccccEEEEcCCchhhhHHHHHHHhhcCCCeEEee-ccC
Q 036520 179 PEWVDFPSSVALRTFDAIGMHHGFYGMNASGITDAHRTAEILHSCQAMAIRSCPEFEGEYLNLLEKLTGKPVIPVG-LLT 257 (473)
Q Consensus 179 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~~~~~~~vG-p~~ 257 (473)
.-| .|-. .|.....+..|.+++ ...+|.+++ ++ .+-++.+|| |+.
T Consensus 346 qVW---------------AWR~-------------~Rikki~k~vD~ll~--IfPFE~~~y---~~-~gv~v~yVGHPL~ 391 (608)
T PRK01021 346 SIW---------------AWRP-------------KRKTILEKYLDLLLL--ILPFEQNLF---KD-SPLRTVYLGHPLV 391 (608)
T ss_pred cce---------------eeCc-------------chHHHHHHHhhhhee--cCccCHHHH---Hh-cCCCeEEECCcHH
Confidence 111 1100 022222233333322 223555533 22 356799999 776
Q ss_pred CCCCCCCCCCCchhhhhccccCCCCCcEEEEeecCcccCCHHHHHHHHHHHh--c--CCCCEEEEEcCCCCCCCccccCc
Q 036520 258 PEPNSAKGRDHQISKIFQWLDEQKPRSVVFVGFGSECKLSKDQVYEIAYGLE--L--SGLPFLWALRKPEWATDDVDALP 333 (473)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~--~--~~~~~i~~~~~~~~~~~~~~~~p 333 (473)
...... ...++..+-+.-.+++++|-+--||-...=...+..++++.+ . .+.+|++...... ..
T Consensus 392 d~i~~~----~~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~l~~~l~fvvp~a~~~--------~~ 459 (608)
T PRK01021 392 ETISSF----SPNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNLTIQVQAFLASSLASTHQLLVSSANPK--------YD 459 (608)
T ss_pred hhcccC----CCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHhccCeEEEEecCchh--------hH
Confidence 543211 112233333333334568889889865422333444555554 3 2445655433211 01
Q ss_pred hhhhhhcCCCc---eEEecccchHHHhhCCCcceeeeccCchhHHHHHhhCCceeccc-cccccccceeeeee-------
Q 036520 334 LGFADTIRGKG---IVSIGWAPQLEILAHPSIGTSLFHAGWGSVIETLQFGHSLVVLP-LIIDQPLNARLLVD------- 402 (473)
Q Consensus 334 ~~~~~~~~~~n---v~~~~~~pq~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P-~~~DQ~~na~~v~~------- 402 (473)
+.+.+..+..+ +.+..--...++++.|++ .+.-.|- .++|+..+|+|||++= ...=-+..++++.+
T Consensus 460 ~~i~~~~~~~~~~~~~ii~~~~~~~~m~aaD~--aLaaSGT-aTLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIs 536 (608)
T PRK01021 460 HLILEVLQQEGCLHSHIVPSQFRYELMRECDC--ALAKCGT-IVLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYS 536 (608)
T ss_pred HHHHHHHhhcCCCCeEEecCcchHHHHHhcCe--eeecCCH-HHHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeee
Confidence 12222222112 222210012688888888 6666665 5789999999998852 11111122333332
Q ss_pred -----cceEEEEecCC-CCCcCHHHHHHHHHHHhcCc-chHHHHHHHHHHHHHhccCC
Q 036520 403 -----KDLAVQVERKD-DGSFTRDGIAKALRLATVSE-EGEKLRVRAREAANTFNDKK 453 (473)
Q Consensus 403 -----~G~G~~l~~~~-~~~~t~~~l~~~i~~ll~~~-~~~~~~~~a~~~~~~~~~~~ 453 (473)
+|=.+....-+ -+.+|++.|++++ ++|.++ ...++++..+++++.+.+.-
T Consensus 537 LpNIIagr~VvPEllqgQ~~~tpe~La~~l-~lL~d~~~r~~~~~~l~~lr~~Lg~~~ 593 (608)
T PRK01021 537 LPNIILGSTIFPEFIGGKKDFQPEEVAAAL-DILKTSQSKEKQKDACRDLYQAMNESA 593 (608)
T ss_pred hhHHhcCCCcchhhcCCcccCCHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHhcCCC
Confidence 01111111110 1268999999997 777721 22356666666777765333
No 102
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=98.31 E-value=0.0017 Score=64.86 Aligned_cols=78 Identities=21% Similarity=0.078 Sum_probs=53.7
Q ss_pred CCceEEecccch---HHHhhCCCcceeeec---cC-chhHHHHHhhCCceeccccccccccceeeee---ecceEEEEec
Q 036520 342 GKGIVSIGWAPQ---LEILAHPSIGTSLFH---AG-WGSVIETLQFGHSLVVLPLIIDQPLNARLLV---DKDLAVQVER 411 (473)
Q Consensus 342 ~~nv~~~~~~pq---~~ll~~~~~~~~ItH---GG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~---~~G~G~~l~~ 411 (473)
.++|.+.+++|+ ..+|..+++ +|+- -| .-++.||+++|+|+|+.-..+. ....++ +...|...
T Consensus 304 ~~~V~f~g~v~~~~l~~~l~~adv--~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp---~~~iv~~~~~g~~G~l~-- 376 (419)
T cd03806 304 EDKVEFVVNAPFEELLEELSTASI--GLHTMWNEHFGIGVVEYMAAGLIPLAHASGGP---LLDIVVPWDGGPTGFLA-- 376 (419)
T ss_pred CCeEEEecCCCHHHHHHHHHhCeE--EEECCccCCcccHHHHHHHcCCcEEEEcCCCC---chheeeccCCCCceEEe--
Confidence 358999999987 567888888 5531 12 2488999999999997654321 111222 33567653
Q ss_pred CCCCCcCHHHHHHHHHHHhc
Q 036520 412 KDDGSFTRDGIAKALRLATV 431 (473)
Q Consensus 412 ~~~~~~t~~~l~~~i~~ll~ 431 (473)
. +.++++++|.++++
T Consensus 377 ----~-d~~~la~ai~~ll~ 391 (419)
T cd03806 377 ----S-TAEEYAEAIEKILS 391 (419)
T ss_pred ----C-CHHHHHHHHHHHHh
Confidence 2 78899999999998
No 103
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.31 E-value=5.5e-06 Score=79.94 Aligned_cols=137 Identities=13% Similarity=0.192 Sum_probs=78.3
Q ss_pred CCCcEEEEeecCcccCC-H---HHHHHHHHHHhcC-CCCEEEEEcCCCCCCCccccCchhhhhhcCC-CceEEecccch-
Q 036520 281 KPRSVVFVGFGSECKLS-K---DQVYEIAYGLELS-GLPFLWALRKPEWATDDVDALPLGFADTIRG-KGIVSIGWAPQ- 353 (473)
Q Consensus 281 ~~~~~V~vs~Gs~~~~~-~---~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~-~nv~~~~~~pq- 353 (473)
.+++.|+|++=...... + ..+..+++++.+. +.++||.+...... . ....+.++. +|+++.+-+++
T Consensus 178 ~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p~~---~----~~i~~~l~~~~~v~~~~~l~~~ 250 (346)
T PF02350_consen 178 APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNPRG---S----DIIIEKLKKYDNVRLIEPLGYE 250 (346)
T ss_dssp TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-HHH---H----HHHHHHHTT-TTEEEE----HH
T ss_pred cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCchH---H----HHHHHHhcccCCEEEECCCCHH
Confidence 44668999985444444 3 4455566666555 78899988743111 1 111111111 38888766654
Q ss_pred --HHHhhCCCcceeeeccCchhHH-HHHhhCCceeccccccccccceeeee--ecceEEEEecCCCCCcCHHHHHHHHHH
Q 036520 354 --LEILAHPSIGTSLFHAGWGSVI-ETLQFGHSLVVLPLIIDQPLNARLLV--DKDLAVQVERKDDGSFTRDGIAKALRL 428 (473)
Q Consensus 354 --~~ll~~~~~~~~ItHGG~~s~~-eal~~GvP~l~~P~~~DQ~~na~~v~--~~G~G~~l~~~~~~~~t~~~l~~~i~~ 428 (473)
..+|.++++ +|+..| +++ ||.+.|+|+|.+ ..+..|-+ ..|-.+.+ ..+.++|.+++++
T Consensus 251 ~~l~ll~~a~~--vvgdSs--GI~eEa~~lg~P~v~i------R~~geRqe~r~~~~nvlv------~~~~~~I~~ai~~ 314 (346)
T PF02350_consen 251 EYLSLLKNADL--VVGDSS--GIQEEAPSLGKPVVNI------RDSGERQEGRERGSNVLV------GTDPEAIIQAIEK 314 (346)
T ss_dssp HHHHHHHHESE--EEESSH--HHHHHGGGGT--EEEC------SSS-S-HHHHHTTSEEEE------TSSHHHHHHHHHH
T ss_pred HHHHHHhcceE--EEEcCc--cHHHHHHHhCCeEEEe------cCCCCCHHHHhhcceEEe------CCCHHHHHHHHHH
Confidence 778889999 999999 566 999999999999 22222222 22444442 3589999999999
Q ss_pred HhcCcchHHHHHHHH
Q 036520 429 ATVSEEGEKLRVRAR 443 (473)
Q Consensus 429 ll~~~~~~~~~~~a~ 443 (473)
+++ +.....++.
T Consensus 315 ~l~---~~~~~~~~~ 326 (346)
T PF02350_consen 315 ALS---DKDFYRKLK 326 (346)
T ss_dssp HHH----HHHHHHHH
T ss_pred HHh---ChHHHHhhc
Confidence 999 544444433
No 104
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.29 E-value=1.3e-06 Score=70.05 Aligned_cols=119 Identities=20% Similarity=0.233 Sum_probs=81.2
Q ss_pred EEEEeecCcccCCH----HHHHHHHHHHhcCCC-CEEEEEcCCCCCCCccccCchhhhhhcCCCceEE--ecccch-HHH
Q 036520 285 VVFVGFGSECKLSK----DQVYEIAYGLELSGL-PFLWALRKPEWATDDVDALPLGFADTIRGKGIVS--IGWAPQ-LEI 356 (473)
Q Consensus 285 ~V~vs~Gs~~~~~~----~~~~~~~~al~~~~~-~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~--~~~~pq-~~l 356 (473)
.+||+-||..- +. -.-...++.|.+.|. +.|+.++.+... .++......+..++.+ .+|-|- .+.
T Consensus 5 ~vFVTVGtT~F-d~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~~------~~d~~~~~~k~~gl~id~y~f~psl~e~ 77 (170)
T KOG3349|consen 5 TVFVTVGTTSF-DDLISCVLSEEFLQELQKRGFTKLIIQIGRGQPF------FGDPIDLIRKNGGLTIDGYDFSPSLTED 77 (170)
T ss_pred EEEEEeccccH-HHHHHHHcCHHHHHHHHHcCccEEEEEecCCccC------CCCHHHhhcccCCeEEEEEecCccHHHH
Confidence 89999998762 11 112335666677776 567777765322 1111111113334444 466775 666
Q ss_pred hhCCCcceeeeccCchhHHHHHhhCCceecccc----ccccccceeeeeecceEEEEecC
Q 036520 357 LAHPSIGTSLFHAGWGSVIETLQFGHSLVVLPL----IIDQPLNARLLVDKDLAVQVERK 412 (473)
Q Consensus 357 l~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P~----~~DQ~~na~~v~~~G~G~~l~~~ 412 (473)
.+.+++ +|+|+|.||++|.|..|+|.|+++- -..|..-|..+++.|.=..-...
T Consensus 78 I~~Adl--VIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~egyL~~C~ps 135 (170)
T KOG3349|consen 78 IRSADL--VISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAEEGYLYYCTPS 135 (170)
T ss_pred HhhccE--EEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHhcCcEEEeecc
Confidence 666888 9999999999999999999999984 46899999999998876655554
No 105
>PRK00654 glgA glycogen synthase; Provisional
Probab=98.25 E-value=0.0014 Score=66.37 Aligned_cols=166 Identities=13% Similarity=0.060 Sum_probs=85.4
Q ss_pred cEEEEeecCcccCCHHHHHHHHHHHh---cCCCCEEEEEcCCCCCCCccccCchhhhhhcC--CCceEE-ecccch--HH
Q 036520 284 SVVFVGFGSECKLSKDQVYEIAYGLE---LSGLPFLWALRKPEWATDDVDALPLGFADTIR--GKGIVS-IGWAPQ--LE 355 (473)
Q Consensus 284 ~~V~vs~Gs~~~~~~~~~~~~~~al~---~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~--~~nv~~-~~~~pq--~~ 355 (473)
..+++..|.... .+.+..+++++. +.+.+++++-.+. . ..-+.+....+ ..++.+ .+|-.+ ..
T Consensus 282 ~~~i~~vGRl~~--~KG~~~li~a~~~l~~~~~~lvivG~g~-~------~~~~~l~~l~~~~~~~v~~~~g~~~~~~~~ 352 (466)
T PRK00654 282 APLFAMVSRLTE--QKGLDLVLEALPELLEQGGQLVLLGTGD-P------ELEEAFRALAARYPGKVGVQIGYDEALAHR 352 (466)
T ss_pred CcEEEEeecccc--ccChHHHHHHHHHHHhcCCEEEEEecCc-H------HHHHHHHHHHHHCCCcEEEEEeCCHHHHHH
Confidence 356666777653 333444444443 3366666653221 1 01111111111 134443 455322 35
Q ss_pred HhhCCCcceeee---ccCc-hhHHHHHhhCCceecccccc--ccccceeeeeecceEEEEecCCCCCcCHHHHHHHHHHH
Q 036520 356 ILAHPSIGTSLF---HAGW-GSVIETLQFGHSLVVLPLII--DQPLNARLLVDKDLAVQVERKDDGSFTRDGIAKALRLA 429 (473)
Q Consensus 356 ll~~~~~~~~It---HGG~-~s~~eal~~GvP~l~~P~~~--DQ~~na~~v~~~G~G~~l~~~~~~~~t~~~l~~~i~~l 429 (473)
+++.+++ +|. +-|. .+.+||+++|+|.|+....+ |.-.+...-.+.+.|..++.. +.++++++|.++
T Consensus 353 ~~~~aDv--~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~~~G~lv~~~-----d~~~la~~i~~~ 425 (466)
T PRK00654 353 IYAGADM--FLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGEATGFVFDDF-----NAEDLLRALRRA 425 (466)
T ss_pred HHhhCCE--EEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCCCceEEeCCC-----CHHHHHHHHHHH
Confidence 7788888 664 3344 48899999999999865432 211111111222778888765 789999999998
Q ss_pred hcCcchHHHHHHHHHHHHH-hccCCCcHHHHHHHHHHHHH
Q 036520 430 TVSEEGEKLRVRAREAANT-FNDKKLHDDYSVRFVEYLKI 468 (473)
Q Consensus 430 l~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~ 468 (473)
++..++++.+++ +++. ++..-+-+..++..++..++
T Consensus 426 l~~~~~~~~~~~---~~~~~~~~~fsw~~~a~~~~~lY~~ 462 (466)
T PRK00654 426 LELYRQPPLWRA---LQRQAMAQDFSWDKSAEEYLELYRR 462 (466)
T ss_pred HHHhcCHHHHHH---HHHHHhccCCChHHHHHHHHHHHHH
Confidence 761112222222 2222 22333445666666655443
No 106
>PLN02501 digalactosyldiacylglycerol synthase
Probab=98.13 E-value=0.015 Score=59.83 Aligned_cols=101 Identities=13% Similarity=0.088 Sum_probs=62.3
Q ss_pred ceEEecccchH-HHhhCCCcceeeec---cC-chhHHHHHhhCCceeccccccccccceeeeeecceEEEEecCCCCCcC
Q 036520 344 GIVSIGWAPQL-EILAHPSIGTSLFH---AG-WGSVIETLQFGHSLVVLPLIIDQPLNARLLVDKDLAVQVERKDDGSFT 418 (473)
Q Consensus 344 nv~~~~~~pq~-~ll~~~~~~~~ItH---GG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~t 418 (473)
++.+.++.++. ++++.+++ ||.= =| ..+++||+++|+|+|+....+.. . +..-+-|. + .. +
T Consensus 602 ~V~FLG~~dd~~~lyasaDV--FVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e----~-V~~g~nGl-l-~~-----D 667 (794)
T PLN02501 602 NLNFLKGRDHADDSLHGYKV--FINPSISDVLCTATAEALAMGKFVVCADHPSNE----F-FRSFPNCL-T-YK-----T 667 (794)
T ss_pred EEEecCCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCCEEEecCCCCc----e-EeecCCeE-e-cC-----C
Confidence 36666777654 58888888 7652 23 36899999999999998775432 1 22222332 2 12 6
Q ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHHHHHhccCCCcHHHHHHHHHHH
Q 036520 419 RDGIAKALRLATVSEEGEKLRVRAREAANTFNDKKLHDDYSVRFVEYL 466 (473)
Q Consensus 419 ~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 466 (473)
.++++++|.++|+ ++..+..+.+ ...-+-+..++.++++.
T Consensus 668 ~EafAeAI~~LLs---d~~~rl~~~a-----~~~~SWeAaadrLle~~ 707 (794)
T PLN02501 668 SEDFVAKVKEALA---NEPQPLTPEQ-----RYNLSWEAATQRFMEYS 707 (794)
T ss_pred HHHHHHHHHHHHh---CchhhhHHHH-----HhhCCHHHHHHHHHHhh
Confidence 8999999999998 4443322221 11223355556666544
No 107
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=98.10 E-value=9.7e-05 Score=69.97 Aligned_cols=158 Identities=17% Similarity=0.173 Sum_probs=99.4
Q ss_pred cEEEEeecCcccCCHHHHHHHHHHHhc----C-CCCEEEEEcCCCCCCCccccCchhhhhhcCCCceEEe---cccchHH
Q 036520 284 SVVFVGFGSECKLSKDQVYEIAYGLEL----S-GLPFLWALRKPEWATDDVDALPLGFADTIRGKGIVSI---GWAPQLE 355 (473)
Q Consensus 284 ~~V~vs~Gs~~~~~~~~~~~~~~al~~----~-~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~---~~~pq~~ 355 (473)
..|.+++=--.+.. +.+..|++++.+ . +..+|......... .-+. +......+++.+. +|.+...
T Consensus 205 ~~iLvT~HRreN~~-~~~~~i~~al~~i~~~~~~~~viyp~H~~~~v-----~e~~-~~~L~~~~~v~li~pl~~~~f~~ 277 (383)
T COG0381 205 KYILVTAHRRENVG-EPLEEICEALREIAEEYPDVIVIYPVHPRPRV-----RELV-LKRLKNVERVKLIDPLGYLDFHN 277 (383)
T ss_pred cEEEEEcchhhccc-ccHHHHHHHHHHHHHhCCCceEEEeCCCChhh-----hHHH-HHHhCCCCcEEEeCCcchHHHHH
Confidence 38888875444444 556666666643 3 34444443322110 0011 1112233466664 4667789
Q ss_pred HhhCCCcceeeeccCchhHHHHHhhCCceeccccccccccceeeeeecceEEEEecCCCCCcCHHHHHHHHHHHhcCcch
Q 036520 356 ILAHPSIGTSLFHAGWGSVIETLQFGHSLVVLPLIIDQPLNARLLVDKDLAVQVERKDDGSFTRDGIAKALRLATVSEEG 435 (473)
Q Consensus 356 ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~t~~~l~~~i~~ll~~~~~ 435 (473)
++.++-+ ++|..|. -.-||-..|+|++++=...|+|. ..+.|.-+.+. .+.+.|.+++.++++ +
T Consensus 278 L~~~a~~--iltDSGg-iqEEAp~lg~Pvl~lR~~TERPE----~v~agt~~lvg------~~~~~i~~~~~~ll~---~ 341 (383)
T COG0381 278 LMKNAFL--ILTDSGG-IQEEAPSLGKPVLVLRDTTERPE----GVEAGTNILVG------TDEENILDAATELLE---D 341 (383)
T ss_pred HHHhceE--EEecCCc-hhhhHHhcCCcEEeeccCCCCcc----ceecCceEEeC------ccHHHHHHHHHHHhh---C
Confidence 9999988 9999875 47899999999999999999997 33445554443 467999999999999 7
Q ss_pred HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHH
Q 036520 436 EKLRVRAREAANTFNDKKLHDDYSVRFVEYLKI 468 (473)
Q Consensus 436 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (473)
++..+|++....-.-+.. +...+++.+..
T Consensus 342 ~~~~~~m~~~~npYgdg~----as~rIv~~l~~ 370 (383)
T COG0381 342 EEFYERMSNAKNPYGDGN----ASERIVEILLN 370 (383)
T ss_pred hHHHHHHhcccCCCcCcc----hHHHHHHHHHH
Confidence 888887666554443333 34444444443
No 108
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=98.02 E-value=0.017 Score=58.76 Aligned_cols=162 Identities=14% Similarity=-0.000 Sum_probs=86.2
Q ss_pred EEEEeecCcccC-CHHHHHHHHHHHhcCCCCEEEEEcCCCCCCCccccCchhhhhhc--CCCceEEecccch---HHHhh
Q 036520 285 VVFVGFGSECKL-SKDQVYEIAYGLELSGLPFLWALRKPEWATDDVDALPLGFADTI--RGKGIVSIGWAPQ---LEILA 358 (473)
Q Consensus 285 ~V~vs~Gs~~~~-~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~--~~~nv~~~~~~pq---~~ll~ 358 (473)
.+++..|..... ..+.+.+.+..+.+.+.+++++-.+. . ...+.+.... ...++.+....+. ..+++
T Consensus 292 ~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~-~------~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~ 364 (473)
T TIGR02095 292 PLFGVISRLTQQKGVDLLLAALPELLELGGQLVVLGTGD-P------ELEEALRELAERYPGNVRVIIGYDEALAHLIYA 364 (473)
T ss_pred CEEEEEecCccccChHHHHHHHHHHHHcCcEEEEECCCC-H------HHHHHHHHHHHHCCCcEEEEEcCCHHHHHHHHH
Confidence 566667777642 23333333343433455555543321 0 0111111111 1235666555555 35778
Q ss_pred CCCcceeeec---cCc-hhHHHHHhhCCceeccccccccccceeeeeec------ceEEEEecCCCCCcCHHHHHHHHHH
Q 036520 359 HPSIGTSLFH---AGW-GSVIETLQFGHSLVVLPLIIDQPLNARLLVDK------DLAVQVERKDDGSFTRDGIAKALRL 428 (473)
Q Consensus 359 ~~~~~~~ItH---GG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~------G~G~~l~~~~~~~~t~~~l~~~i~~ 428 (473)
.+++ +|.- -|. .+.+||+++|+|+|+....+ ....+.+. +.|..++.. +.++++++|.+
T Consensus 365 ~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~v~~~~~~~~~~~G~l~~~~-----d~~~la~~i~~ 433 (473)
T TIGR02095 365 GADF--ILMPSRFEPCGLTQLYAMRYGTVPIVRRTGG----LADTVVDGDPEAESGTGFLFEEY-----DPGALLAALSR 433 (473)
T ss_pred hCCE--EEeCCCcCCcHHHHHHHHHCCCCeEEccCCC----ccceEecCCCCCCCCceEEeCCC-----CHHHHHHHHHH
Confidence 8888 6642 244 37899999999999865532 23333333 778887654 78899999999
Q ss_pred HhcCcc-hHHHHHHHHHHHHHh-ccCCCcHHHHHHHHHHHH
Q 036520 429 ATVSEE-GEKLRVRAREAANTF-NDKKLHDDYSVRFVEYLK 467 (473)
Q Consensus 429 ll~~~~-~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~ 467 (473)
+++.-. +++.+++ +++.. .+.-+-+..++.+++..+
T Consensus 434 ~l~~~~~~~~~~~~---~~~~~~~~~fsw~~~a~~~~~~Y~ 471 (473)
T TIGR02095 434 ALRLYRQDPSLWEA---LQKNAMSQDFSWDKSAKQYVELYR 471 (473)
T ss_pred HHHHHhcCHHHHHH---HHHHHhccCCCcHHHHHHHHHHHH
Confidence 886100 2333332 22222 223344566666665443
No 109
>PRK10125 putative glycosyl transferase; Provisional
Probab=98.01 E-value=0.0072 Score=59.95 Aligned_cols=116 Identities=11% Similarity=0.042 Sum_probs=67.1
Q ss_pred EEEEeecCcccCCHHHHHHHHHHHhcCCCCEE-EEEcCCCCCCCccccCchhhhhhcCCCceEEeccc-ch---HHHhhC
Q 036520 285 VVFVGFGSECKLSKDQVYEIAYGLELSGLPFL-WALRKPEWATDDVDALPLGFADTIRGKGIVSIGWA-PQ---LEILAH 359 (473)
Q Consensus 285 ~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i-~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~-pq---~~ll~~ 359 (473)
.+++..|............+++++...+.++. +.++.+... .+ +++...++. ++ ..+++.
T Consensus 242 ~~il~v~~~~~~~~Kg~~~li~A~~~l~~~~~L~ivG~g~~~------~~---------~~v~~~g~~~~~~~l~~~y~~ 306 (405)
T PRK10125 242 PKIAVVAHDLRYDGKTDQQLVREMMALGDKIELHTFGKFSPF------TA---------GNVVNHGFETDKRKLMSALNQ 306 (405)
T ss_pred CEEEEEEeccccCCccHHHHHHHHHhCCCCeEEEEEcCCCcc------cc---------cceEEecCcCCHHHHHHHHHh
Confidence 34444454322233445667888877654443 334432111 11 256666665 33 455666
Q ss_pred CCcceeeec----cCchhHHHHHhhCCceeccccccccccceeeeeecceEEEEecCCCCCcCHHHHHHHHH
Q 036520 360 PSIGTSLFH----AGWGSVIETLQFGHSLVVLPLIIDQPLNARLLVDKDLAVQVERKDDGSFTRDGIAKALR 427 (473)
Q Consensus 360 ~~~~~~ItH----GG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~t~~~l~~~i~ 427 (473)
+++ ||.- |--.++.||+++|+|+|+....+ ....+. .+-|..++.. +.++|++++.
T Consensus 307 aDv--fV~pS~~Egfp~vilEAmA~G~PVVat~~gG----~~Eiv~-~~~G~lv~~~-----d~~~La~~~~ 366 (405)
T PRK10125 307 MDA--LVFSSRVDNYPLILCEALSIGVPVIATHSDA----AREVLQ-KSGGKTVSEE-----EVLQLAQLSK 366 (405)
T ss_pred CCE--EEECCccccCcCHHHHHHHcCCCEEEeCCCC----hHHhEe-CCcEEEECCC-----CHHHHHhccC
Confidence 777 6653 22368999999999999998765 112232 2468888765 6777886543
No 110
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.00 E-value=0.0017 Score=61.61 Aligned_cols=221 Identities=16% Similarity=0.150 Sum_probs=117.7
Q ss_pred hhccccEEEEcCCchhhhHHHHHHHhhcCCCeEEee-ccCCCCCCCCCCCCchhhhhccccCCCCCcEEEEeecCcccCC
Q 036520 219 ILHSCQAMAIRSCPEFEGEYLNLLEKLTGKPVIPVG-LLTPEPNSAKGRDHQISKIFQWLDEQKPRSVVFVGFGSECKLS 297 (473)
Q Consensus 219 ~~~~~~~~~~~s~~~le~~~~~~~~~~~~~~~~~vG-p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~ 297 (473)
.....|.++. ...+|+++++. .+-+.+||| |+....... ...+...+-+.....+.++.+--||-.+.-
T Consensus 133 i~~~~D~lLa--ilPFE~~~y~k----~g~~~~yVGHpl~d~i~~~----~~r~~ar~~l~~~~~~~~lalLPGSR~sEI 202 (381)
T COG0763 133 IAKYVDHLLA--ILPFEPAFYDK----FGLPCTYVGHPLADEIPLL----PDREAAREKLGIDADEKTLALLPGSRRSEI 202 (381)
T ss_pred HHHHhhHeee--ecCCCHHHHHh----cCCCeEEeCChhhhhcccc----ccHHHHHHHhCCCCCCCeEEEecCCcHHHH
Confidence 3334444432 23356554332 233489999 555443211 122333333433344559999999876522
Q ss_pred HHHHHHHHHHHhc-----CCCCEEEEEcCCCCCCCccccCchhhhhhcCC-CceEEecccch--HHHhhCCCcceeeecc
Q 036520 298 KDQVYEIAYGLEL-----SGLPFLWALRKPEWATDDVDALPLGFADTIRG-KGIVSIGWAPQ--LEILAHPSIGTSLFHA 369 (473)
Q Consensus 298 ~~~~~~~~~al~~-----~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~-~nv~~~~~~pq--~~ll~~~~~~~~ItHG 369 (473)
...+..+.+++.+ .+.+|++.+..... ...-....+.... -++.+ .++ ...+..|++ .+.-+
T Consensus 203 ~rl~~~f~~a~~~l~~~~~~~~~vlp~~~~~~-----~~~~~~~~~~~~~~~~~~~---~~~~~~~a~~~aD~--al~aS 272 (381)
T COG0763 203 RRLLPPFVQAAQELKARYPDLKFVLPLVNAKY-----RRIIEEALKWEVAGLSLIL---IDGEKRKAFAAADA--ALAAS 272 (381)
T ss_pred HHHHHHHHHHHHHHHhhCCCceEEEecCcHHH-----HHHHHHHhhccccCceEEe---cCchHHHHHHHhhH--HHHhc
Confidence 2223334444432 45677776543210 0000000000000 11222 122 446777777 66655
Q ss_pred CchhHHHHHhhCCceecc----ccccccccceeeeeecc------------eEEEEecCCCCCcCHHHHHHHHHHHhcCc
Q 036520 370 GWGSVIETLQFGHSLVVL----PLIIDQPLNARLLVDKD------------LAVQVERKDDGSFTRDGIAKALRLATVSE 433 (473)
Q Consensus 370 G~~s~~eal~~GvP~l~~----P~~~DQ~~na~~v~~~G------------~G~~l~~~~~~~~t~~~l~~~i~~ll~~~ 433 (473)
|- -++|+..+|+|||+. |+. +..|++..+.. +..-+-. ..++++.|++++.++++++
T Consensus 273 GT-~tLE~aL~g~P~Vv~Yk~~~it---~~iak~lvk~~yisLpNIi~~~~ivPEliq---~~~~pe~la~~l~~ll~~~ 345 (381)
T COG0763 273 GT-ATLEAALAGTPMVVAYKVKPIT---YFIAKRLVKLPYVSLPNILAGREIVPELIQ---EDCTPENLARALEELLLNG 345 (381)
T ss_pred cH-HHHHHHHhCCCEEEEEeccHHH---HHHHHHhccCCcccchHHhcCCccchHHHh---hhcCHHHHHHHHHHHhcCh
Confidence 54 478999999999875 221 11222332221 1111111 2688999999999999943
Q ss_pred -chHHHHHHHHHHHHHhccCCCcHHHHHHHHHHH
Q 036520 434 -EGEKLRVRAREAANTFNDKKLHDDYSVRFVEYL 466 (473)
Q Consensus 434 -~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 466 (473)
+...+++..++++..++..+..+.+++.+.+.+
T Consensus 346 ~~~~~~~~~~~~l~~~l~~~~~~e~aA~~vl~~~ 379 (381)
T COG0763 346 DRREALKEKFRELHQYLREDPASEIAAQAVLELL 379 (381)
T ss_pred HhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 224788888999999987767778888777765
No 111
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=97.98 E-value=0.00071 Score=66.40 Aligned_cols=89 Identities=13% Similarity=0.104 Sum_probs=62.5
Q ss_pred CceEEecccch-HHHhhCCCcceeeec--cCchhHHHHHhhCCceeccccccccccceeeeeecceEEEEecCCCCCcCH
Q 036520 343 KGIVSIGWAPQ-LEILAHPSIGTSLFH--AGWGSVIETLQFGHSLVVLPLIIDQPLNARLLVDKDLAVQVERKDDGSFTR 419 (473)
Q Consensus 343 ~nv~~~~~~pq-~~ll~~~~~~~~ItH--GG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~t~ 419 (473)
.++.+.++.++ ..++..+++-++.++ |...++.||+++|+|+|+..... .....+++...|..++.. +.
T Consensus 261 ~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v~~~~~G~lv~~~-----d~ 332 (372)
T cd04949 261 DYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEIIEDGENGYLVPKG-----DI 332 (372)
T ss_pred ceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCC---CcHHHcccCCCceEeCCC-----cH
Confidence 46778777765 778899998555554 33468999999999999865321 123344445677777654 78
Q ss_pred HHHHHHHHHHhcCcchHHHHHHH
Q 036520 420 DGIAKALRLATVSEEGEKLRVRA 442 (473)
Q Consensus 420 ~~l~~~i~~ll~~~~~~~~~~~a 442 (473)
++++++|.++++ +++.++++
T Consensus 333 ~~la~~i~~ll~---~~~~~~~~ 352 (372)
T cd04949 333 EALAEAIIELLN---DPKLLQKF 352 (372)
T ss_pred HHHHHHHHHHHc---CHHHHHHH
Confidence 999999999999 55444333
No 112
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.94 E-value=5.8e-05 Score=65.20 Aligned_cols=91 Identities=16% Similarity=0.188 Sum_probs=67.4
Q ss_pred CCceEEecccch---HHHhhCCCcceeeec----cCchhHHHHHhhCCceeccccccccccceeeeeecceEEEEecCCC
Q 036520 342 GKGIVSIGWAPQ---LEILAHPSIGTSLFH----AGWGSVIETLQFGHSLVVLPLIIDQPLNARLLVDKDLAVQVERKDD 414 (473)
Q Consensus 342 ~~nv~~~~~~pq---~~ll~~~~~~~~ItH----GG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~ 414 (473)
..++.+.+++++ ..++..+++ +|+. |+..++.||+.+|+|+|+.. ...+...+.+.+.|..++..
T Consensus 72 ~~~i~~~~~~~~~~l~~~~~~~di--~v~~s~~e~~~~~~~Ea~~~g~pvI~~~----~~~~~e~~~~~~~g~~~~~~-- 143 (172)
T PF00534_consen 72 KENIIFLGYVPDDELDELYKSSDI--FVSPSRNEGFGLSLLEAMACGCPVIASD----IGGNNEIINDGVNGFLFDPN-- 143 (172)
T ss_dssp GTTEEEEESHSHHHHHHHHHHTSE--EEE-BSSBSS-HHHHHHHHTT-EEEEES----STHHHHHSGTTTSEEEESTT--
T ss_pred ccccccccccccccccccccccee--ccccccccccccccccccccccceeecc----ccCCceeeccccceEEeCCC--
Confidence 358888899873 778888888 7766 56679999999999999754 44444555555678888763
Q ss_pred CCcCHHHHHHHHHHHhcCcchHHHHHHHHHHH
Q 036520 415 GSFTRDGIAKALRLATVSEEGEKLRVRAREAA 446 (473)
Q Consensus 415 ~~~t~~~l~~~i~~ll~~~~~~~~~~~a~~~~ 446 (473)
+.++++++|.+++. +++.++++.+-+
T Consensus 144 ---~~~~l~~~i~~~l~---~~~~~~~l~~~~ 169 (172)
T PF00534_consen 144 ---DIEELADAIEKLLN---DPELRQKLGKNA 169 (172)
T ss_dssp ---SHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHC---CHHHHHHHHHHh
Confidence 99999999999999 776666665544
No 113
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=97.93 E-value=0.00073 Score=65.30 Aligned_cols=173 Identities=16% Similarity=0.103 Sum_probs=89.1
Q ss_pred CCCeEEee-ccCCCCCCCCCCCCchhhhhccccCCCCCcEEEEeecCcccCCHHHHHHHHHHHh---c--CCCCEEEEEc
Q 036520 247 GKPVIPVG-LLTPEPNSAKGRDHQISKIFQWLDEQKPRSVVFVGFGSECKLSKDQVYEIAYGLE---L--SGLPFLWALR 320 (473)
Q Consensus 247 ~~~~~~vG-p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~---~--~~~~~i~~~~ 320 (473)
+-++.||| |+....... . ...+..+.+ -.+.+++|.+--||-..-=...+..++++++ + .+.+|++...
T Consensus 152 g~~~~~VGHPl~d~~~~~---~-~~~~~~~~~-l~~~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~~p~l~fvvp~a 226 (373)
T PF02684_consen 152 GVPVTYVGHPLLDEVKPE---P-DRAEAREKL-LDPDKPIIALLPGSRKSEIKRLLPIFLEAAKLLKKQRPDLQFVVPVA 226 (373)
T ss_pred CCCeEEECCcchhhhccC---C-CHHHHHHhc-CCCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 45699999 776544332 1 122233333 2233458999889865421222233444442 2 3556666543
Q ss_pred CCCCCCCccccCchhhhhhc--CCCceEEe-cccchHHHhhCCCcceeeeccCchhHHHHHhhCCceeccc-cccccccc
Q 036520 321 KPEWATDDVDALPLGFADTI--RGKGIVSI-GWAPQLEILAHPSIGTSLFHAGWGSVIETLQFGHSLVVLP-LIIDQPLN 396 (473)
Q Consensus 321 ~~~~~~~~~~~~p~~~~~~~--~~~nv~~~-~~~pq~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P-~~~DQ~~n 396 (473)
.... ...+.... ...++.+. ..-.-.+++..+++ .+.-.| ..|+|+..+|+|||++= ...=-+..
T Consensus 227 ~~~~--------~~~i~~~~~~~~~~~~~~~~~~~~~~~m~~ad~--al~~SG-TaTLE~Al~g~P~Vv~Yk~~~lt~~i 295 (373)
T PF02684_consen 227 PEVH--------EELIEEILAEYPPDVSIVIIEGESYDAMAAADA--ALAASG-TATLEAALLGVPMVVAYKVSPLTYFI 295 (373)
T ss_pred CHHH--------HHHHHHHHHhhCCCCeEEEcCCchHHHHHhCcc--hhhcCC-HHHHHHHHhCCCEEEEEcCcHHHHHH
Confidence 3211 01011111 11122222 12234678888887 555444 46889999999998862 22222334
Q ss_pred eeeeeecce------------EEEEecCCCCCcCHHHHHHHHHHHhcCcchHHHHHH
Q 036520 397 ARLLVDKDL------------AVQVERKDDGSFTRDGIAKALRLATVSEEGEKLRVR 441 (473)
Q Consensus 397 a~~v~~~G~------------G~~l~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~ 441 (473)
|+++.+... -.-+-. +.+|++.|.+++.++++ |++.++.
T Consensus 296 ak~lvk~~~isL~Niia~~~v~PEliQ---~~~~~~~i~~~~~~ll~---~~~~~~~ 346 (373)
T PF02684_consen 296 AKRLVKVKYISLPNIIAGREVVPELIQ---EDATPENIAAELLELLE---NPEKRKK 346 (373)
T ss_pred HHHhhcCCEeechhhhcCCCcchhhhc---ccCCHHHHHHHHHHHhc---CHHHHHH
Confidence 444433221 111111 27899999999999999 5544433
No 114
>PLN02316 synthase/transferase
Probab=97.90 E-value=0.06 Score=58.67 Aligned_cols=82 Identities=15% Similarity=-0.004 Sum_probs=52.0
Q ss_pred CceEEecccchH---HHhhCCCcceeeec---cC-chhHHHHHhhCCceecccccc--ccccc-------eeeeeecceE
Q 036520 343 KGIVSIGWAPQL---EILAHPSIGTSLFH---AG-WGSVIETLQFGHSLVVLPLII--DQPLN-------ARLLVDKDLA 406 (473)
Q Consensus 343 ~nv~~~~~~pq~---~ll~~~~~~~~ItH---GG-~~s~~eal~~GvP~l~~P~~~--DQ~~n-------a~~v~~~G~G 406 (473)
+++.+....+.. .+++.+++ ||.- =| ..+.+||+++|+|.|+....+ |.-.. ++..-..+-|
T Consensus 900 ~rV~f~g~~de~lah~iyaaADi--flmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~tG 977 (1036)
T PLN02316 900 DRARLCLTYDEPLSHLIYAGADF--ILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPNG 977 (1036)
T ss_pred CeEEEEecCCHHHHHHHHHhCcE--EEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccCCce
Confidence 356665444443 57877887 7743 22 358999999999988765432 22211 1111112467
Q ss_pred EEEecCCCCCcCHHHHHHHHHHHhc
Q 036520 407 VQVERKDDGSFTRDGIAKALRLATV 431 (473)
Q Consensus 407 ~~l~~~~~~~~t~~~l~~~i~~ll~ 431 (473)
...+.. +++.|..+|.+++.
T Consensus 978 flf~~~-----d~~aLa~AL~raL~ 997 (1036)
T PLN02316 978 FSFDGA-----DAAGVDYALNRAIS 997 (1036)
T ss_pred EEeCCC-----CHHHHHHHHHHHHh
Confidence 777654 88899999999998
No 115
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=97.89 E-value=0.00073 Score=66.57 Aligned_cols=113 Identities=12% Similarity=0.153 Sum_probs=76.5
Q ss_pred CceEEecccch---HHHhhCCCcceeeec----cCc-hhHHHHHhhCCceeccccccccccceeeeeecceEEEEecCCC
Q 036520 343 KGIVSIGWAPQ---LEILAHPSIGTSLFH----AGW-GSVIETLQFGHSLVVLPLIIDQPLNARLLVDKDLAVQVERKDD 414 (473)
Q Consensus 343 ~nv~~~~~~pq---~~ll~~~~~~~~ItH----GG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~ 414 (473)
.++.+.+++|+ ..+++.+++ +|.- .|. .++.||+++|+|+|+.... .+...+++...|..+..
T Consensus 257 ~~v~~~G~~~~~~l~~~~~~aDv--~v~pS~~~E~f~~~~lEAma~G~PVI~s~~g----g~~Eiv~~~~~G~~l~~--- 327 (380)
T PRK15484 257 DRCIMLGGQPPEKMHNYYPLADL--VVVPSQVEEAFCMVAVEAMAAGKPVLASTKG----GITEFVLEGITGYHLAE--- 327 (380)
T ss_pred CcEEEeCCCCHHHHHHHHHhCCE--EEeCCCCccccccHHHHHHHcCCCEEEeCCC----CcHhhcccCCceEEEeC---
Confidence 47888899986 455888888 6642 343 5788999999999997653 23444555556765533
Q ss_pred CCcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHH
Q 036520 415 GSFTRDGIAKALRLATVSEEGEKLRVRAREAANTFNDKKLHDDYSVRFVEYLKI 468 (473)
Q Consensus 415 ~~~t~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (473)
..+.++++++|.++++ +++.++.+++.++...+.-+-+..++.+.+.+..
T Consensus 328 -~~d~~~la~~I~~ll~---d~~~~~~~~~ar~~~~~~fsw~~~a~~~~~~l~~ 377 (380)
T PRK15484 328 -PMTSDSIISDINRTLA---DPELTQIAEQAKDFVFSKYSWEGVTQRFEEQIHN 377 (380)
T ss_pred -CCCHHHHHHHHHHHHc---CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3479999999999999 6665444444433333444556677777776654
No 116
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.86 E-value=9.3e-05 Score=58.48 Aligned_cols=126 Identities=20% Similarity=0.245 Sum_probs=79.3
Q ss_pred EEEeecCcccCCHHHHHH--HHHHHhcCCCCEEEEEcCCCCCCCccccCc-hhhhhhcCCCceEEeccc--ch-HHHhhC
Q 036520 286 VFVGFGSECKLSKDQVYE--IAYGLELSGLPFLWALRKPEWATDDVDALP-LGFADTIRGKGIVSIGWA--PQ-LEILAH 359 (473)
Q Consensus 286 V~vs~Gs~~~~~~~~~~~--~~~al~~~~~~~i~~~~~~~~~~~~~~~~p-~~~~~~~~~~nv~~~~~~--pq-~~ll~~ 359 (473)
+||+-||....-...+.. ..+-.+....++|+.++.++ ..| + +.++.+|. +- ..+...
T Consensus 2 ifVTvGstf~~f~rlv~k~e~~el~~~i~e~lIvQyGn~d-------~kpva---------gl~v~~F~~~~kiQsli~d 65 (161)
T COG5017 2 IFVTVGSTFYPFNRLVLKIEVLELTELIQEELIVQYGNGD-------IKPVA---------GLRVYGFDKEEKIQSLIHD 65 (161)
T ss_pred eEEEecCccchHHHHHhhHHHHHHHHHhhhheeeeecCCC-------ccccc---------ccEEEeechHHHHHHHhhc
Confidence 689999985411111111 22222344568899998752 223 2 33444443 32 566666
Q ss_pred CCcceeeeccCchhHHHHHhhCCceecccccc--------ccccceeeeeecceEEEEecCCCCCcCHHHHHHHHHHHhc
Q 036520 360 PSIGTSLFHAGWGSVIETLQFGHSLVVLPLII--------DQPLNARLLVDKDLAVQVERKDDGSFTRDGIAKALRLATV 431 (473)
Q Consensus 360 ~~~~~~ItHGG~~s~~eal~~GvP~l~~P~~~--------DQ~~na~~v~~~G~G~~l~~~~~~~~t~~~l~~~i~~ll~ 431 (473)
+++ +|+|+|.||++.++..++|.|++|-.. .|-.-|..+.+.+.=+....-+ ..-.+.+.....+++.
T Consensus 66 arI--VISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~klae~~~vv~~spte--~~L~a~l~~s~~~v~~ 141 (161)
T COG5017 66 ARI--VISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLAEINYVVACSPTE--LVLQAGLQVSVADVLH 141 (161)
T ss_pred ceE--EEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHHhcCceEEEcCCc--hhhHHhHhhhhhhhcC
Confidence 666 999999999999999999999999643 6777888888887776665421 2234445555555554
No 117
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=97.74 E-value=0.0073 Score=58.30 Aligned_cols=110 Identities=15% Similarity=0.206 Sum_probs=79.9
Q ss_pred CceEEecccchHHHh---hCCCcceeeec-------cCc------hhHHHHHhhCCceeccccccccccceeeeeecceE
Q 036520 343 KGIVSIGWAPQLEIL---AHPSIGTSLFH-------AGW------GSVIETLQFGHSLVVLPLIIDQPLNARLLVDKDLA 406 (473)
Q Consensus 343 ~nv~~~~~~pq~~ll---~~~~~~~~ItH-------GG~------~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G 406 (473)
+|+.+.+|+|+.++. .. +.+++... +.+ +-+.+.+++|+|+|+. ++...+..+++.++|
T Consensus 207 ~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~----~~~~~~~~V~~~~~G 281 (333)
T PRK09814 207 ANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVW----SKAAIADFIVENGLG 281 (333)
T ss_pred CCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEEC----CCccHHHHHHhCCce
Confidence 489999999986654 43 44333221 111 2277789999999985 456677888899999
Q ss_pred EEEecCCCCCcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHhccCCCcHHHHHHHHHH
Q 036520 407 VQVERKDDGSFTRDGIAKALRLATVSEEGEKLRVRAREAANTFNDKKLHDDYSVRFVEY 465 (473)
Q Consensus 407 ~~l~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 465 (473)
+.++ +.+++.+++.++.+ ++-..+++|++++++.++.+-...+++..++..
T Consensus 282 ~~v~-------~~~el~~~l~~~~~-~~~~~m~~n~~~~~~~~~~g~~~~~~~~~~~~~ 332 (333)
T PRK09814 282 FVVD-------SLEELPEIIDNITE-EEYQEMVENVKKISKLLRNGYFTKKALVDAIKE 332 (333)
T ss_pred EEeC-------CHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHHhcchhHHHHHHHHHhc
Confidence 9985 34688888988654 223568999999999999887778887776643
No 118
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=97.69 E-value=0.025 Score=57.64 Aligned_cols=118 Identities=12% Similarity=0.097 Sum_probs=73.3
Q ss_pred CCceEEecccchHHHhhCCCcceeee---ccCc-hhHHHHHhhCCceeccccccccccceeeeeecceEEEEecCC--CC
Q 036520 342 GKGIVSIGWAPQLEILAHPSIGTSLF---HAGW-GSVIETLQFGHSLVVLPLIIDQPLNARLLVDKDLAVQVERKD--DG 415 (473)
Q Consensus 342 ~~nv~~~~~~pq~~ll~~~~~~~~It---HGG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~--~~ 415 (473)
.+++.+.++.+..+++..+++ +|. .-|. .+++||+++|+|+|+....+ .+...+++-.-|..++..+ +.
T Consensus 375 ~~~V~f~G~~~~~~~~~~adv--~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~---G~~eiI~~g~nG~lv~~~~~~~d 449 (500)
T TIGR02918 375 QDYIHLKGHRNLSEVYKDYEL--YLSASTSEGFGLTLMEAVGSGLGMIGFDVNY---GNPTFIEDNKNGYLIPIDEEEDD 449 (500)
T ss_pred CCeEEEcCCCCHHHHHHhCCE--EEEcCccccccHHHHHHHHhCCCEEEecCCC---CCHHHccCCCCEEEEeCCccccc
Confidence 457888898888999999998 664 3344 58999999999999976421 1223333334576665320 00
Q ss_pred CcC-HHHHHHHHHHHhcCcchHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHH
Q 036520 416 SFT-RDGIAKALRLATVSEEGEKLRVRAREAANTFNDKKLHDDYSVRFVEYLKI 468 (473)
Q Consensus 416 ~~t-~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (473)
.-+ .++++++|.++++.+.-..+.+++.+.++. =+.+..+..|.+.+++
T Consensus 450 ~~~~~~~la~~I~~ll~~~~~~~~~~~a~~~a~~----fs~~~v~~~w~~ll~~ 499 (500)
T TIGR02918 450 EDQIITALAEKIVEYFNSNDIDAFHEYSYQIAEG----FLTANIIEKWKKLVRE 499 (500)
T ss_pred hhHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHHhh
Confidence 112 788999999999621112344444444333 3456666777766543
No 119
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.65 E-value=0.0099 Score=53.22 Aligned_cols=48 Identities=13% Similarity=0.074 Sum_probs=35.4
Q ss_pred CCceEEecccch----HHHhhCCCcceeeeccC----chhHHHHHhhCCceecccccc
Q 036520 342 GKGIVSIGWAPQ----LEILAHPSIGTSLFHAG----WGSVIETLQFGHSLVVLPLII 391 (473)
Q Consensus 342 ~~nv~~~~~~pq----~~ll~~~~~~~~ItHGG----~~s~~eal~~GvP~l~~P~~~ 391 (473)
.+|+.+.+++++ ..++..+++ +|+-.. .+++.||+.+|+|+|+.+..+
T Consensus 160 ~~~v~~~~~~~~~~~~~~~~~~~di--~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~ 215 (229)
T cd01635 160 LDRVIFLGGLDPEELLALLLAAADV--FVLPSLREGFGLVVLEAMACGLPVIATDVGG 215 (229)
T ss_pred cccEEEeCCCCcHHHHHHHhhcCCE--EEecccccCcChHHHHHHhCCCCEEEcCCCC
Confidence 348888888632 334444777 777665 689999999999999987654
No 120
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.63 E-value=0.0011 Score=66.08 Aligned_cols=140 Identities=11% Similarity=0.061 Sum_probs=83.8
Q ss_pred cEEEEeecCcccCCHHHHHHHHHHHhc---C--CCCEEEEEcCCCCCCCccccCchhhhhh----cCCCceEEecccchH
Q 036520 284 SVVFVGFGSECKLSKDQVYEIAYGLEL---S--GLPFLWALRKPEWATDDVDALPLGFADT----IRGKGIVSIGWAPQL 354 (473)
Q Consensus 284 ~~V~vs~Gs~~~~~~~~~~~~~~al~~---~--~~~~i~~~~~~~~~~~~~~~~p~~~~~~----~~~~nv~~~~~~pq~ 354 (473)
...+++.|.... ...+..+++++.+ . +.++.|.+-++... -+.+.+. ....++.+.+|+++.
T Consensus 230 ~~~il~~Grl~~--~Kg~~~li~a~~~l~~~~p~~~l~~~iiG~g~~-------~~~l~~~~~~~~~~~~V~f~G~v~~~ 300 (407)
T cd04946 230 TLRIVSCSYLVP--VKRVDLIIKALAALAKARPSIKIKWTHIGGGPL-------EDTLKELAESKPENISVNFTGELSNS 300 (407)
T ss_pred CEEEEEeecccc--ccCHHHHHHHHHHHHHhCCCceEEEEEEeCchH-------HHHHHHHHHhcCCCceEEEecCCChH
Confidence 356666777654 2333444444432 2 24666654433111 1111111 124578899999975
Q ss_pred H---HhhCCCcceeeeccC----chhHHHHHhhCCceeccccccccccceeeeeecceEEEEecCCCCCcCHHHHHHHHH
Q 036520 355 E---ILAHPSIGTSLFHAG----WGSVIETLQFGHSLVVLPLIIDQPLNARLLVDKDLAVQVERKDDGSFTRDGIAKALR 427 (473)
Q Consensus 355 ~---ll~~~~~~~~ItHGG----~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~t~~~l~~~i~ 427 (473)
+ ++..+++.+||...- -++++||+++|+|+|+.... .....+.+.+.|..+.. .-+.++++++|.
T Consensus 301 e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~vg----g~~e~i~~~~~G~l~~~----~~~~~~la~~I~ 372 (407)
T cd04946 301 EVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNVG----GTPEIVDNGGNGLLLSK----DPTPNELVSSLS 372 (407)
T ss_pred HHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCCC----CcHHHhcCCCcEEEeCC----CCCHHHHHHHHH
Confidence 4 455544444765442 36899999999999986543 34445555557877764 347899999999
Q ss_pred HHhcCcchHHHHHHHH
Q 036520 428 LATVSEEGEKLRVRAR 443 (473)
Q Consensus 428 ~ll~~~~~~~~~~~a~ 443 (473)
++++ |++.++++.
T Consensus 373 ~ll~---~~~~~~~m~ 385 (407)
T cd04946 373 KFID---NEEEYQTMR 385 (407)
T ss_pred HHHh---CHHHHHHHH
Confidence 9998 665554443
No 121
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=97.61 E-value=0.00028 Score=58.14 Aligned_cols=79 Identities=16% Similarity=0.208 Sum_probs=51.9
Q ss_pred CCceEEecccch-HHHhhCCCcceeeec--cC-chhHHHHHhhCCceeccccccccccceeeeeecceEEEEecCCCCCc
Q 036520 342 GKGIVSIGWAPQ-LEILAHPSIGTSLFH--AG-WGSVIETLQFGHSLVVLPLIIDQPLNARLLVDKDLAVQVERKDDGSF 417 (473)
Q Consensus 342 ~~nv~~~~~~pq-~~ll~~~~~~~~ItH--GG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~ 417 (473)
.+|+.+.+|++. .++++.+++.+..+. .| -+++.|++++|+|+|+.+.. .....+..|.|..+ ..
T Consensus 52 ~~~v~~~g~~~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~~-----~~~~~~~~~~~~~~-~~----- 120 (135)
T PF13692_consen 52 RPNVRFHGFVEELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDNG-----AEGIVEEDGCGVLV-AN----- 120 (135)
T ss_dssp HCTEEEE-S-HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHHH-----CHCHS---SEEEE--TT-----
T ss_pred CCCEEEcCCHHHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCcc-----hhhheeecCCeEEE-CC-----
Confidence 459999999965 778899999665542 23 48999999999999998772 33344446788777 43
Q ss_pred CHHHHHHHHHHHhc
Q 036520 418 TRDGIAKALRLATV 431 (473)
Q Consensus 418 t~~~l~~~i~~ll~ 431 (473)
+.+++.++|.++++
T Consensus 121 ~~~~l~~~i~~l~~ 134 (135)
T PF13692_consen 121 DPEELAEAIERLLN 134 (135)
T ss_dssp -HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhc
Confidence 89999999999987
No 122
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.47 E-value=0.0006 Score=67.30 Aligned_cols=172 Identities=19% Similarity=0.164 Sum_probs=87.9
Q ss_pred CCcEEEEeecCcccCCHHHHHHHHHHHhcCCCCEEEEEcCCCCCCCccccCchhhhh-hcCCCceEEecccchHHHh---
Q 036520 282 PRSVVFVGFGSECKLSKDQVYEIAYGLELSGLPFLWALRKPEWATDDVDALPLGFAD-TIRGKGIVSIGWAPQLEIL--- 357 (473)
Q Consensus 282 ~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~-~~~~~nv~~~~~~pq~~ll--- 357 (473)
++.++|.||.+..+.+++.+..-.+-|++.+.-.+|..+..... ...+-..+.+ .+..+.+.+.++.++.+-|
T Consensus 283 ~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~~---~~~l~~~~~~~Gv~~~Ri~f~~~~~~~ehl~~~ 359 (468)
T PF13844_consen 283 EDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPASG---EARLRRRFAAHGVDPDRIIFSPVAPREEHLRRY 359 (468)
T ss_dssp SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETSTTH---HHHHHHHHHHTTS-GGGEEEEE---HHHHHHHG
T ss_pred CCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCHHH---HHHHHHHHHHcCCChhhEEEcCCCCHHHHHHHh
Confidence 45599999999999999999988888888888888888754321 1111111111 1134578888888775444
Q ss_pred hCCCcceee---eccCchhHHHHHhhCCceecccccc-ccccceeeeeecceEEEEecCCCCCcCHHHHHHHHHHHhcCc
Q 036520 358 AHPSIGTSL---FHAGWGSVIETLQFGHSLVVLPLII-DQPLNARLLVDKDLAVQVERKDDGSFTRDGIAKALRLATVSE 433 (473)
Q Consensus 358 ~~~~~~~~I---tHGG~~s~~eal~~GvP~l~~P~~~-DQ~~na~~v~~~G~G~~l~~~~~~~~t~~~l~~~i~~ll~~~ 433 (473)
..+++ ++ ..+|.+|++|||.+|||+|.+|--. =...-|..+..+|+.-.+- -+.++-.+.--++-.
T Consensus 360 ~~~DI--~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~lGl~ElIA------~s~~eYv~~Av~La~-- 429 (468)
T PF13844_consen 360 QLADI--CLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRALGLPELIA------DSEEEYVEIAVRLAT-- 429 (468)
T ss_dssp GG-SE--EE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHHHT-GGGB-------SSHHHHHHHHHHHHH--
T ss_pred hhCCE--EeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHHcCCchhcC------CCHHHHHHHHHHHhC--
Confidence 34554 54 4678899999999999999999421 2222334455556653332 244444444445555
Q ss_pred chHHHHHHHH-HHHHHhccCC--CcHHHHHHHHHHHH
Q 036520 434 EGEKLRVRAR-EAANTFNDKK--LHDDYSVRFVEYLK 467 (473)
Q Consensus 434 ~~~~~~~~a~-~~~~~~~~~~--~~~~~~~~~~~~~~ 467 (473)
|++++++.+ ++++.+.+.+ .....+..+++.++
T Consensus 430 -D~~~l~~lR~~Lr~~~~~SpLfd~~~~ar~lE~a~~ 465 (468)
T PF13844_consen 430 -DPERLRALRAKLRDRRSKSPLFDPKRFARNLEAAYR 465 (468)
T ss_dssp --HHHHHHHHHHHHHHHHHSGGG-HHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHH
Confidence 555554443 3444433222 23445555555443
No 123
>PRK14099 glycogen synthase; Provisional
Probab=97.43 E-value=0.18 Score=51.29 Aligned_cols=112 Identities=19% Similarity=0.173 Sum_probs=60.8
Q ss_pred ce-EEecccch-HHHh-hCCCcceeee---ccCc-hhHHHHHhhCCceecccccc--ccccceee-eee--cceEEEEec
Q 036520 344 GI-VSIGWAPQ-LEIL-AHPSIGTSLF---HAGW-GSVIETLQFGHSLVVLPLII--DQPLNARL-LVD--KDLAVQVER 411 (473)
Q Consensus 344 nv-~~~~~~pq-~~ll-~~~~~~~~It---HGG~-~s~~eal~~GvP~l~~P~~~--DQ~~na~~-v~~--~G~G~~l~~ 411 (473)
++ .+.+|-.+ ..++ +.+++ ||. +=|. .+.+||+++|+|.|+....+ |--....- .+. .+.|..++.
T Consensus 351 ~v~~~~G~~~~l~~~~~a~aDi--fv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l~~~ 428 (485)
T PRK14099 351 QIGVVIGYDEALAHLIQAGADA--LLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQFSP 428 (485)
T ss_pred CEEEEeCCCHHHHHHHHhcCCE--EEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceEEeCC
Confidence 44 45676433 2233 34666 764 3444 47789999998766654322 21111100 011 146877765
Q ss_pred CCCCCcCHHHHHHHHHH---HhcCcchHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHH
Q 036520 412 KDDGSFTRDGIAKALRL---ATVSEEGEKLRVRAREAANTFNDKKLHDDYSVRFVEYLK 467 (473)
Q Consensus 412 ~~~~~~t~~~l~~~i~~---ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (473)
. +.++|+++|.+ +++ +++.++++.+-+. ...-+-+..+++.++..+
T Consensus 429 ~-----d~~~La~ai~~a~~l~~---d~~~~~~l~~~~~--~~~fSw~~~a~~y~~lY~ 477 (485)
T PRK14099 429 V-----TADALAAALRKTAALFA---DPVAWRRLQRNGM--TTDVSWRNPAQHYAALYR 477 (485)
T ss_pred C-----CHHHHHHHHHHHHHHhc---CHHHHHHHHHHhh--hhcCChHHHHHHHHHHHH
Confidence 4 78999999987 566 5555544443221 223344555566555443
No 124
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=97.39 E-value=0.013 Score=56.09 Aligned_cols=131 Identities=13% Similarity=0.042 Sum_probs=75.6
Q ss_pred CcEEEEeecCccc---CCHHHHHHHHHHHhcCCCCEEEEEcCCCCCCCccccCchhhhhhcCCCceEEecccch-HHHhh
Q 036520 283 RSVVFVGFGSECK---LSKDQVYEIAYGLELSGLPFLWALRKPEWATDDVDALPLGFADTIRGKGIVSIGWAPQ-LEILA 358 (473)
Q Consensus 283 ~~~V~vs~Gs~~~---~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq-~~ll~ 358 (473)
++.|.+..|+... .+.+.+.++++.+.+.+.++++..+++.. ...-....+.....++.-..-++| .++++
T Consensus 179 ~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~~e-----~~~~~~i~~~~~~~~l~g~~sL~el~ali~ 253 (319)
T TIGR02193 179 APYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGNDAE-----KQRAERIAEALPGAVVLPKMSLAEVAALLA 253 (319)
T ss_pred CCEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCCHHH-----HHHHHHHHhhCCCCeecCCCCHHHHHHHHH
Confidence 4466666665333 67788889998887667777765443311 011111111111112211113444 78889
Q ss_pred CCCcceeeeccCchhHHHHHhhCCceecc--cccccc--cc--ceeeeeecceEEEEecCCCCCcCHHHHHHHHHHHh
Q 036520 359 HPSIGTSLFHAGWGSVIETLQFGHSLVVL--PLIIDQ--PL--NARLLVDKDLAVQVERKDDGSFTRDGIAKALRLAT 430 (473)
Q Consensus 359 ~~~~~~~ItHGG~~s~~eal~~GvP~l~~--P~~~DQ--~~--na~~v~~~G~G~~l~~~~~~~~t~~~l~~~i~~ll 430 (473)
+|++ +|+.= .|.++=|.+.|+|+|++ |....+ |. +...++. . ... .++.+++.+++.++|
T Consensus 254 ~a~l--~I~~D-Sgp~HlAaa~g~P~i~lfg~t~p~~~~P~~~~~~~~~~-~-----~~~---~I~~~~V~~ai~~~~ 319 (319)
T TIGR02193 254 GADA--VVGVD-TGLTHLAAALDKPTVTLYGATDPGRTGGYGKPNVALLG-E-----SGA---NPTPDEVLAALEELL 319 (319)
T ss_pred cCCE--EEeCC-ChHHHHHHHcCCCEEEEECCCCHhhcccCCCCceEEcc-C-----ccC---CCCHHHHHHHHHhhC
Confidence 9998 99874 56788888999999876 222111 11 2222221 1 133 789999999998875
No 125
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.17 E-value=0.012 Score=59.73 Aligned_cols=92 Identities=15% Similarity=0.143 Sum_probs=64.3
Q ss_pred CCceEEecccchHHHhhCCCcceeeec----cCchhHHHHHhhCCceeccccccccccceeeeeec-----c-eEEEEec
Q 036520 342 GKGIVSIGWAPQLEILAHPSIGTSLFH----AGWGSVIETLQFGHSLVVLPLIIDQPLNARLLVDK-----D-LAVQVER 411 (473)
Q Consensus 342 ~~nv~~~~~~pq~~ll~~~~~~~~ItH----GG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~-----G-~G~~l~~ 411 (473)
.+|+.+.+...-.+++..+++ +|.- |--+++.||+++|+|+|+... ......+++. | .|..++.
T Consensus 353 ~~~V~f~G~~~v~~~l~~aDv--~vlpS~~Eg~p~~vlEAma~G~PVVatd~----g~~~elv~~~~~~~~g~~G~lv~~ 426 (475)
T cd03813 353 EDNVKFTGFQNVKEYLPKLDV--LVLTSISEGQPLVILEAMAAGIPVVATDV----GSCRELIEGADDEALGPAGEVVPP 426 (475)
T ss_pred CCeEEEcCCccHHHHHHhCCE--EEeCchhhcCChHHHHHHHcCCCEEECCC----CChHHHhcCCcccccCCceEEECC
Confidence 358888886666888988888 5533 334799999999999999543 2333333332 2 6777765
Q ss_pred CCCCCcCHHHHHHHHHHHhcCcchHHHHHHHHHHHH
Q 036520 412 KDDGSFTRDGIAKALRLATVSEEGEKLRVRAREAAN 447 (473)
Q Consensus 412 ~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~a~~~~~ 447 (473)
. +.++++++|.++++ |++.++++.+-+.
T Consensus 427 ~-----d~~~la~ai~~ll~---~~~~~~~~~~~a~ 454 (475)
T cd03813 427 A-----DPEALARAILRLLK---DPELRRAMGEAGR 454 (475)
T ss_pred C-----CHHHHHHHHHHHhc---CHHHHHHHHHHHH
Confidence 4 78999999999999 6666555544333
No 126
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.10 E-value=0.31 Score=49.56 Aligned_cols=65 Identities=14% Similarity=0.120 Sum_probs=47.9
Q ss_pred CCceEEecccch-HHHhhCCCcceeee---ccC-chhHHHHHhhCCceeccccccccccceeeeeecceEEEEecC
Q 036520 342 GKGIVSIGWAPQ-LEILAHPSIGTSLF---HAG-WGSVIETLQFGHSLVVLPLIIDQPLNARLLVDKDLAVQVERK 412 (473)
Q Consensus 342 ~~nv~~~~~~pq-~~ll~~~~~~~~It---HGG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~ 412 (473)
.+++.+.+|..+ ..+|..+++ ||. +-| -+++.||+++|+|+|+.... .+...+++-..|..++..
T Consensus 454 ~d~V~FlG~~~Dv~~~LaaADV--fVlPS~~EGfp~vlLEAMA~GlPVVATdvG----G~~EiV~dG~nG~LVp~~ 523 (578)
T PRK15490 454 LERILFVGASRDVGYWLQKMNV--FILFSRYEGLPNVLIEAQMVGVPVISTPAG----GSAECFIEGVSGFILDDA 523 (578)
T ss_pred CCcEEECCChhhHHHHHHhCCE--EEEcccccCccHHHHHHHHhCCCEEEeCCC----CcHHHcccCCcEEEECCC
Confidence 468999888755 677888888 775 345 47999999999999977653 344555555678887664
No 127
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=96.85 E-value=0.002 Score=49.25 Aligned_cols=62 Identities=21% Similarity=0.288 Sum_probs=50.0
Q ss_pred hhhhccccCCCCCcEEEEeecCcccC---C--HHHHHHHHHHHhcCCCCEEEEEcCCCCCCCccccCch
Q 036520 271 SKIFQWLDEQKPRSVVFVGFGSECKL---S--KDQVYEIAYGLELSGLPFLWALRKPEWATDDVDALPL 334 (473)
Q Consensus 271 ~~~~~~l~~~~~~~~V~vs~Gs~~~~---~--~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~p~ 334 (473)
..+..|+...+.++.|+||+||.... . ...+..++++++..+..++..+...... ....+|+
T Consensus 28 ~~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~~~~--~lg~lP~ 94 (97)
T PF06722_consen 28 AVVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAAQRA--ELGELPD 94 (97)
T ss_dssp EEEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTCCCG--GCCS-TT
T ss_pred CCCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHHHHH--hhCCCCC
Confidence 45888999999999999999999873 2 2578889999999999999999876543 3466776
No 128
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=96.75 E-value=0.019 Score=47.43 Aligned_cols=103 Identities=14% Similarity=0.241 Sum_probs=66.6
Q ss_pred EEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCcccCCCeEEEEecCCccccccccCCCCCCCcc
Q 036520 6 HVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPKNIQRLPKPAPESEVAALINFVEFPLPASAALDDKLLLPEGAEA 85 (473)
Q Consensus 6 ~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~l~~~~~~ 85 (473)
||++++.....| ...+++.|.++||+|++++.....+.... ..++.+..++. .
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~~-------~~~i~~~~~~~----------~------- 53 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYEI-------IEGIKVIRLPS----------P------- 53 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhhH-------hCCeEEEEecC----------C-------
Confidence 477777766666 45779999999999999998544322221 25788877752 1
Q ss_pred CCCCChhhHHHHHHHHhhhhhHHHHHHHhCCCcEEEEcCCcc---hHHHHHHHcC-CCeEEEec
Q 036520 86 TVDIPSENIQYLKIAYDLLQHPFKQFVAQQSVDWIIVDVMSH---WAGKIAQEYH-VPLLLFSA 145 (473)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~---~~~~~A~~lg-iP~v~~~~ 145 (473)
.... ...+ . .. .+..++++.+||+|.+-.... .+..+++..+ +|.+....
T Consensus 54 -~k~~---~~~~----~-~~-~l~k~ik~~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~h 107 (139)
T PF13477_consen 54 -RKSP---LNYI----K-YF-RLRKIIKKEKPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTVH 107 (139)
T ss_pred -CCcc---HHHH----H-HH-HHHHHhccCCCCEEEEecCChHHHHHHHHHHHcCCCCEEEEec
Confidence 0001 1111 1 12 678889999999998775432 3445678888 88886544
No 129
>PHA01633 putative glycosyl transferase group 1
Probab=96.71 E-value=0.036 Score=53.02 Aligned_cols=100 Identities=14% Similarity=0.241 Sum_probs=61.1
Q ss_pred CceEEe---cccch---HHHhhCCCcceeeec---cCc-hhHHHHHhhCCceecccc------cccccc------ceeee
Q 036520 343 KGIVSI---GWAPQ---LEILAHPSIGTSLFH---AGW-GSVIETLQFGHSLVVLPL------IIDQPL------NARLL 400 (473)
Q Consensus 343 ~nv~~~---~~~pq---~~ll~~~~~~~~ItH---GG~-~s~~eal~~GvP~l~~P~------~~DQ~~------na~~v 400 (473)
+++.+. +++++ ..+++.+++ ||.- =|+ .++.||+++|+|+|+.-. .+|++. +..-.
T Consensus 201 ~~V~f~g~~G~~~~~dl~~~y~~aDi--fV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~~ 278 (335)
T PHA01633 201 ANVHFVAEFGHNSREYIFAFYGAMDF--TIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEEY 278 (335)
T ss_pred CcEEEEecCCCCCHHHHHHHHHhCCE--EEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHHh
Confidence 478877 45554 467888888 7753 243 689999999999998633 334321 11111
Q ss_pred e--ecceEEEEecCCCCCcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHh
Q 036520 401 V--DKDLAVQVERKDDGSFTRDGIAKALRLATVSEEGEKLRVRAREAANTF 449 (473)
Q Consensus 401 ~--~~G~G~~l~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~ 449 (473)
. ..|.|..++ ..++++++++|.++++..+.+....++++.++.+
T Consensus 279 ~~~~~g~g~~~~-----~~d~~~la~ai~~~~~~~~~~~~~~~~~~~a~~f 324 (335)
T PHA01633 279 YDKEHGQKWKIH-----KFQIEDMANAIILAFELQDREERSMKLKELAKKY 324 (335)
T ss_pred cCcccCceeeec-----CCCHHHHHHHHHHHHhccChhhhhHHHHHHHHhc
Confidence 1 246666655 4599999999999966221223334445444444
No 130
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=96.71 E-value=0.25 Score=45.62 Aligned_cols=102 Identities=17% Similarity=0.058 Sum_probs=67.0
Q ss_pred CccChHHHHHHHHHHHhCCCeEEEEeCCCc--cccCCCCCCCcccCCCeEEEEecCCccccccccCCCCCCCccCCCCCh
Q 036520 14 AFGHLMPFFQLSIALAKSGVKVSFISTPKN--IQRLPKPAPESEVAALINFVEFPLPASAALDDKLLLPEGAEATVDIPS 91 (473)
Q Consensus 14 ~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~--~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~ 91 (473)
-.-|+--+-.+.++|.++||+|.+-+-... .+.+... ++.+..+.-. + . .
T Consensus 9 n~~hvhfFk~lI~elekkG~ev~iT~rd~~~v~~LLd~y--------gf~~~~Igk~---------g--------~-~-- 60 (346)
T COG1817 9 NPPHVHFFKNLIWELEKKGHEVLITCRDFGVVTELLDLY--------GFPYKSIGKH---------G--------G-V-- 60 (346)
T ss_pred CcchhhHHHHHHHHHHhCCeEEEEEEeecCcHHHHHHHh--------CCCeEeeccc---------C--------C-c--
Confidence 345666788999999999999988774321 2222222 5555555410 0 0 0
Q ss_pred hhHHHHH-HHHhh--hhhHHHHHHHhCCCcEEEEcCCcchHHHHHHHcCCCeEEEecchh
Q 036520 92 ENIQYLK-IAYDL--LQHPFKQFVAQQSVDWIIVDVMSHWAGKIAQEYHVPLLLFSAFSA 148 (473)
Q Consensus 92 ~~~~~~~-~~~~~--~~~~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~ 148 (473)
.+. ..... ..-.|-+++.+.+||+.+. .++..+..+|.-+|+|++.+.-..-
T Consensus 61 ----tl~~Kl~~~~eR~~~L~ki~~~~kpdv~i~-~~s~~l~rvafgLg~psIi~~D~eh 115 (346)
T COG1817 61 ----TLKEKLLESAERVYKLSKIIAEFKPDVAIG-KHSPELPRVAFGLGIPSIIFVDNEH 115 (346)
T ss_pred ----cHHHHHHHHHHHHHHHHHHHhhcCCceEee-cCCcchhhHHhhcCCceEEecCChh
Confidence 111 11111 2335778899999999999 6788999999999999999865443
No 131
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=96.57 E-value=0.41 Score=46.57 Aligned_cols=109 Identities=11% Similarity=0.099 Sum_probs=71.9
Q ss_pred CCC-ccEEEEecCCCccChHHHHHHHHHHHhC--CCeEEEEeCCCccccCCCCCCCcccCCCeEE-EEecCCcccccccc
Q 036520 1 MAR-KLHVVMLPWSAFGHLMPFFQLSIALAKS--GVKVSFISTPKNIQRLPKPAPESEVAALINF-VEFPLPASAALDDK 76 (473)
Q Consensus 1 m~~-~~~vl~~~~~~~gH~~p~l~la~~L~~~--Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~i~~-~~i~~~~~~~~~~~ 76 (473)
|.+ ++|||++-...-|++.-+.++.+.|+++ +.+|++++.+.+...++.. +.++- +.++
T Consensus 1 ~~~~~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~-------P~id~vi~~~---------- 63 (352)
T PRK10422 1 MDKPFRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILSEN-------PEINALYGIK---------- 63 (352)
T ss_pred CCCCCceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHhccC-------CCceEEEEec----------
Confidence 666 5789999999999999999999999997 8999999998887766553 34432 2222
Q ss_pred CCCCCCCccCCCCChhhHHHHHHHHhhhhhHHHHHHHhCCCcEEEEcCCcchHHHHHHHcCCCeEE
Q 036520 77 LLLPEGAEATVDIPSENIQYLKIAYDLLQHPFKQFVAQQSVDWIIVDVMSHWAGKIAQEYHVPLLL 142 (473)
Q Consensus 77 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~ 142 (473)
.- ... ....+. ..-.+...++..++|++|.=........++...|.+..+
T Consensus 64 -~~--------~~~--~~~~~~-----~~~~l~~~lr~~~yD~vidl~~~~~s~ll~~l~~a~~ri 113 (352)
T PRK10422 64 -NK--------KAG--ASEKIK-----NFFSLIKVLRANKYDLIVNLTDQWMVALLVRLLNARVKI 113 (352)
T ss_pred -cc--------ccc--HHHHHH-----HHHHHHHHHhhCCCCEEEEcccchHHHHHHHHhCCCeEE
Confidence 00 000 000000 111234556778999999654444556677777877644
No 132
>PHA01630 putative group 1 glycosyl transferase
Probab=96.35 E-value=0.14 Score=49.36 Aligned_cols=110 Identities=15% Similarity=0.103 Sum_probs=67.2
Q ss_pred ccch---HHHhhCCCcceee--ec-cC-chhHHHHHhhCCceecccccc--ccc---cceeeeee-----------cceE
Q 036520 350 WAPQ---LEILAHPSIGTSL--FH-AG-WGSVIETLQFGHSLVVLPLII--DQP---LNARLLVD-----------KDLA 406 (473)
Q Consensus 350 ~~pq---~~ll~~~~~~~~I--tH-GG-~~s~~eal~~GvP~l~~P~~~--DQ~---~na~~v~~-----------~G~G 406 (473)
++|+ ..+++.+++ || ++ .| ..++.||+++|+|+|+.-..+ |.- .|...++. .++|
T Consensus 197 ~v~~~~l~~~y~~aDv--~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~~~G 274 (331)
T PHA01630 197 PLPDDDIYSLFAGCDI--LFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPIHVG 274 (331)
T ss_pred cCCHHHHHHHHHhCCE--EEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeeecccccccccCCcccc
Confidence 4665 456888888 55 33 33 468999999999999976543 322 23333321 1345
Q ss_pred EEEecCCCCCcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHH
Q 036520 407 VQVERKDDGSFTRDGIAKALRLATVSEEGEKLRVRAREAANTFNDKKLHDDYSVRFVEYLK 467 (473)
Q Consensus 407 ~~l~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (473)
..++. +.+++.+++.+++.+.+++..+++...-+....+.-+.+..++.+.+.++
T Consensus 275 ~~v~~------~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~~fs~~~ia~k~~~l~~ 329 (331)
T PHA01630 275 YFLDP------DIEDAYQKLLEALANWTPEKKKENLEGRAILYRENYSYNAIAKMWEKILE 329 (331)
T ss_pred cccCC------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 54432 56788888888888321256666655555555545555666677766654
No 133
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=96.34 E-value=0.27 Score=47.63 Aligned_cols=105 Identities=10% Similarity=0.101 Sum_probs=69.6
Q ss_pred EEEEecCCCccChHHHHHHHHHHHhC--CCeEEEEeCCCccccCCCCCCCcccCCCeE-EEEecCCccccccccCCCCCC
Q 036520 6 HVVMLPWSAFGHLMPFFQLSIALAKS--GVKVSFISTPKNIQRLPKPAPESEVAALIN-FVEFPLPASAALDDKLLLPEG 82 (473)
Q Consensus 6 ~vl~~~~~~~gH~~p~l~la~~L~~~--Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~i~-~~~i~~~~~~~~~~~~~l~~~ 82 (473)
|||++-...-|++.-+.++.++|+++ +.+|++++.+.+.+.++.. +.++ +..++ ..-
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~-------p~vd~vi~~~----------~~~--- 60 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPILSEN-------PDINALYGLD----------RKK--- 60 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHHhcC-------CCccEEEEeC----------hhh---
Confidence 58999999999999999999999996 8999999998887766553 3443 23332 000
Q ss_pred CccCCCCChhhHHHHHHHHhhhhhHHHHHHHhCCCcEEEEcCCcchHHHHHHHcCCCeEE
Q 036520 83 AEATVDIPSENIQYLKIAYDLLQHPFKQFVAQQSVDWIIVDVMSHWAGKIAQEYHVPLLL 142 (473)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~ 142 (473)
. .. .... +. ... .+...++..++|++|.=.....+..++...|.|.-+
T Consensus 61 ----~-~~-~~~~-~~----~~~-~l~~~lr~~~yD~vidl~~~~~s~ll~~l~~a~~ri 108 (344)
T TIGR02201 61 ----A-KA-GERK-LA----NQF-HLIKVLRANRYDLVVNLTDQWMVAILVKLLNARVKI 108 (344)
T ss_pred ----h-cc-hHHH-HH----HHH-HHHHHHHhCCCCEEEECCcchHHHHHHHhcCCCeEE
Confidence 0 00 0000 00 111 233456778999999655556677888888999554
No 134
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=96.12 E-value=0.0078 Score=50.62 Aligned_cols=95 Identities=14% Similarity=0.185 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCcccCCCeEEEEecCCccccccccCCCCCCCccCCCCChhhHHHHHH
Q 036520 20 PFFQLSIALAKSGVKVSFISTPKNIQRLPKPAPESEVAALINFVEFPLPASAALDDKLLLPEGAEATVDIPSENIQYLKI 99 (473)
Q Consensus 20 p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 99 (473)
-+..++++|+++||+|++++.......... ...++.+..++++.. .. .... . .
T Consensus 6 ~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~------~~------~~~~-~----~---- 58 (160)
T PF13579_consen 6 YVRELARALAARGHEVTVVTPQPDPEDDEE------EEDGVRVHRLPLPRR------PW------PLRL-L----R---- 58 (160)
T ss_dssp HHHHHHHHHHHTT-EEEEEEE---GGG-SE------EETTEEEEEE--S-S------SS------GGGH-C----C----
T ss_pred HHHHHHHHHHHCCCEEEEEecCCCCccccc------ccCCceEEeccCCcc------ch------hhhh-H----H----
Confidence 467899999999999999996554442211 124788888875433 10 0000 0 0
Q ss_pred HHhhhhhHHHHHH--HhCCCcEEEEcCCc-chHHHHHH-HcCCCeEEEec
Q 036520 100 AYDLLQHPFKQFV--AQQSVDWIIVDVMS-HWAGKIAQ-EYHVPLLLFSA 145 (473)
Q Consensus 100 ~~~~~~~~l~~ll--~~~~pD~vI~D~~~-~~~~~~A~-~lgiP~v~~~~ 145 (473)
....+.+++ ++.+||+|.+.... .....+++ ..++|+|....
T Consensus 59 ----~~~~~~~~l~~~~~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~h 104 (160)
T PF13579_consen 59 ----FLRRLRRLLAARRERPDVVHAHSPTAGLVAALARRRRGIPLVVTVH 104 (160)
T ss_dssp ----HHHHHHHHCHHCT---SEEEEEHHHHHHHHHHHHHHHT--EEEE-S
T ss_pred ----HHHHHHHHHhhhccCCeEEEecccchhHHHHHHHHccCCcEEEEEC
Confidence 112344555 77899999987632 22333444 88999987654
No 135
>PRK14098 glycogen synthase; Provisional
Probab=95.98 E-value=0.33 Score=49.46 Aligned_cols=117 Identities=9% Similarity=-0.052 Sum_probs=67.6
Q ss_pred CceEEecccch---HHHhhCCCcceeeecc---Cc-hhHHHHHhhCCceeccccccccccceeeeeecceEEEEecCCCC
Q 036520 343 KGIVSIGWAPQ---LEILAHPSIGTSLFHA---GW-GSVIETLQFGHSLVVLPLIIDQPLNARLLVDKDLAVQVERKDDG 415 (473)
Q Consensus 343 ~nv~~~~~~pq---~~ll~~~~~~~~ItHG---G~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~ 415 (473)
.++.+...++. ..+++.+++ |+.-. |. .+.+||+++|+|.|+....+-........++.+-|...+..
T Consensus 362 ~~V~~~g~~~~~~~~~~~a~aDi--~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~~~~~~~~G~l~~~~--- 436 (489)
T PRK14098 362 EQVSVQTEFTDAFFHLAIAGLDM--LLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEEVSEDKGSGFIFHDY--- 436 (489)
T ss_pred CCEEEEEecCHHHHHHHHHhCCE--EEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeecCCCCCCceeEeCCC---
Confidence 47888888876 467888888 66432 22 37789999999988876533111100111124678777654
Q ss_pred CcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHH
Q 036520 416 SFTRDGIAKALRLATVSEEGEKLRVRAREAANTFNDKKLHDDYSVRFVEYLKI 468 (473)
Q Consensus 416 ~~t~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (473)
+.++++++|.++++--++++..+++.+ +.+...-+-+..++..++..+.
T Consensus 437 --d~~~la~ai~~~l~~~~~~~~~~~~~~--~~~~~~fsw~~~a~~y~~lY~~ 485 (489)
T PRK14098 437 --TPEALVAKLGEALALYHDEERWEELVL--EAMERDFSWKNSAEEYAQLYRE 485 (489)
T ss_pred --CHHHHHHHHHHHHHHHcCHHHHHHHHH--HHhcCCCChHHHHHHHHHHHHH
Confidence 789999999987630003433322221 1223333445666666655443
No 136
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=95.95 E-value=0.17 Score=50.33 Aligned_cols=166 Identities=11% Similarity=0.121 Sum_probs=95.4
Q ss_pred hccccCCCCCcEEEEeecCcccC------C----HHHHHHHHHHHhcCCCCEEEEEcCCCC-C-CCccccCchhhhhhcC
Q 036520 274 FQWLDEQKPRSVVFVGFGSECKL------S----KDQVYEIAYGLELSGLPFLWALRKPEW-A-TDDVDALPLGFADTIR 341 (473)
Q Consensus 274 ~~~l~~~~~~~~V~vs~Gs~~~~------~----~~~~~~~~~al~~~~~~~i~~~~~~~~-~-~~~~~~~p~~~~~~~~ 341 (473)
..|+.....+++|.++....... . .+.+.++++.+.+.|+++++....... . .+++........+.+.
T Consensus 225 ~~~~~~~~~~~~Vgisvr~~~~~~~~~~~~~~~Y~~~la~~i~~Li~~g~~Vv~lp~~~~~~~~~~dD~~~~~~l~~~~~ 304 (426)
T PRK10017 225 QHWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRIIDEGYQVIALSTCTGIDSYNKDDRMVALNLRQHVS 304 (426)
T ss_pred hhhhcccccCCEEEEEecccccccccccccHHHHHHHHHHHHHHHHHCCCeEEEEecccCccCCCCchHHHHHHHHHhcc
Confidence 34554333445888887655421 1 123344555555568887766432110 0 0011111122223332
Q ss_pred C-CceEE-e-cccch--HHHhhCCCcceeeeccCchhHHHHHhhCCceeccccccccccceeeeeecceEEE-EecCCCC
Q 036520 342 G-KGIVS-I-GWAPQ--LEILAHPSIGTSLFHAGWGSVIETLQFGHSLVVLPLIIDQPLNARLLVDKDLAVQ-VERKDDG 415 (473)
Q Consensus 342 ~-~nv~~-~-~~~pq--~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~-l~~~~~~ 415 (473)
. .++.+ . .+-+. ..+++++++ +|..= +=++.-|+..|||.+++++. +-....++..|.... .+..
T Consensus 305 ~~~~~~vi~~~~~~~e~~~iIs~~dl--~ig~R-lHa~I~a~~~gvP~i~i~Y~---~K~~~~~~~lg~~~~~~~~~--- 375 (426)
T PRK10017 305 DPARYHVVMDELNDLEMGKILGACEL--TVGTR-LHSAIISMNFGTPAIAINYE---HKSAGIMQQLGLPEMAIDIR--- 375 (426)
T ss_pred cccceeEecCCCChHHHHHHHhhCCE--EEEec-chHHHHHHHcCCCEEEeeeh---HHHHHHHHHcCCccEEechh---
Confidence 2 22222 2 23343 478888887 87642 34577788899999999983 333334456676644 5555
Q ss_pred CcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHhc
Q 036520 416 SFTRDGIAKALRLATVSEEGEKLRVRAREAANTFN 450 (473)
Q Consensus 416 ~~t~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~ 450 (473)
.++.++|.+.+.+++++ .++++++.++..+.++
T Consensus 376 ~l~~~~Li~~v~~~~~~--r~~~~~~l~~~v~~~r 408 (426)
T PRK10017 376 HLLDGSLQAMVADTLGQ--LPALNARLAEAVSRER 408 (426)
T ss_pred hCCHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHH
Confidence 78999999999999984 4567777776666665
No 137
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=95.70 E-value=0.063 Score=47.08 Aligned_cols=119 Identities=14% Similarity=0.148 Sum_probs=65.0
Q ss_pred cEEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCcccCCCeEEEEecCCccccccccCCCCCCCc
Q 036520 5 LHVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPKNIQRLPKPAPESEVAALINFVEFPLPASAALDDKLLLPEGAE 84 (473)
Q Consensus 5 ~~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~l~~~~~ 84 (473)
||||+.--=+. +---+..|+++|.+.||+|+++.+....+..-... .....++...... .....+..
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~L~~~g~~V~VvAP~~~~Sg~g~si---t~~~pl~~~~~~~---------~~~~~~~~ 67 (196)
T PF01975_consen 1 MRILLTNDDGI-DAPGIRALAKALSALGHDVVVVAPDSEQSGTGHSI---TLHKPLRVTEVEP---------GHDPGGVE 67 (196)
T ss_dssp SEEEEE-SS-T-TSHHHHHHHHHHTTTSSEEEEEEESSSTTTSTTS-----SSSEEEEEEEE----------TTCCSTTE
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhcCCeEEEEeCCCCCcCcceee---cCCCCeEEEEEEe---------cccCCCCC
Confidence 67777766555 44558889999977789999999877655442221 2233455544320 00011111
Q ss_pred --cCCCCChhhHHHHHHHHhhhhhHHHHHHHhCCCcEEEEcC----------Cc---chHHHHHHHcCCCeEEEecc
Q 036520 85 --ATVDIPSENIQYLKIAYDLLQHPFKQFVAQQSVDWIIVDV----------MS---HWAGKIAQEYHVPLLLFSAF 146 (473)
Q Consensus 85 --~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~----------~~---~~~~~~A~~lgiP~v~~~~~ 146 (473)
.....+.+ ...=.+..++.+.+||+||+-. +. ..|+.-|...|||.+.++..
T Consensus 68 ~~~v~GTPaD----------cv~~al~~~~~~~~pDLViSGiN~G~N~g~~v~~SGTVgAA~ea~~~GipaIA~S~~ 134 (196)
T PF01975_consen 68 AYAVSGTPAD----------CVKLALDGLLPDKKPDLVISGINHGANLGTDVLYSGTVGAAMEAALRGIPAIAVSLD 134 (196)
T ss_dssp EEEESS-HHH----------HHHHHHHCTSTTSS-SEEEEEEEES---GGGGGG-HHHHHHHHHHHTTSEEEEEEEE
T ss_pred EEEEcCcHHH----------HHHHHHHhhhccCCCCEEEECCCCCccCCcCcccccHHHHHHHHHHcCCCeEEEecc
Confidence 11122211 1222344555555799999752 11 34455567899999998764
No 138
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=95.57 E-value=0.76 Score=44.04 Aligned_cols=45 Identities=11% Similarity=0.206 Sum_probs=40.3
Q ss_pred cEEEEecCCCccChHHHHHHHHHHHhC--CCeEEEEeCCCccccCCC
Q 036520 5 LHVVMLPWSAFGHLMPFFQLSIALAKS--GVKVSFISTPKNIQRLPK 49 (473)
Q Consensus 5 ~~vl~~~~~~~gH~~p~l~la~~L~~~--Gh~Vt~~~~~~~~~~~~~ 49 (473)
||||++-...-|++.-+.++.+.|+++ +.+||+++.+.+.+.++.
T Consensus 1 m~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~~~l~~~ 47 (322)
T PRK10964 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFAQIPSW 47 (322)
T ss_pred CeEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHHHHHHhc
Confidence 689999999999999999999999997 999999998887766544
No 139
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=95.45 E-value=1.3 Score=43.04 Aligned_cols=103 Identities=14% Similarity=0.070 Sum_probs=70.2
Q ss_pred cEEEEecCCCccChHHHHHHHHHHHhC--CCeEEEEeCCCccccCCCCCCCcccCCCeEEEE-ecCCccccccccCCCCC
Q 036520 5 LHVVMLPWSAFGHLMPFFQLSIALAKS--GVKVSFISTPKNIQRLPKPAPESEVAALINFVE-FPLPASAALDDKLLLPE 81 (473)
Q Consensus 5 ~~vl~~~~~~~gH~~p~l~la~~L~~~--Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~i~~~~-i~~~~~~~~~~~~~l~~ 81 (473)
||||++-..+-|++.-+.++.+.|+++ +.+|++++.+.+.+.++.. +.++-+- ++ .
T Consensus 1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~-------P~vd~vi~~~--------------~ 59 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLSRM-------PEVNEAIPMP--------------L 59 (348)
T ss_pred CcEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHhcC-------CccCEEEecc--------------c
Confidence 689999999999999999999999996 8999999998887776653 3443221 11 0
Q ss_pred CCccCCCCChhhHHHHHHHHhhhhhHHHHHHHhCCCcEEEEcCCcchHHHHHHHcCCCeEE
Q 036520 82 GAEATVDIPSENIQYLKIAYDLLQHPFKQFVAQQSVDWIIVDVMSHWAGKIAQEYHVPLLL 142 (473)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~ 142 (473)
. .. ... +. ....+...++..++|++|.=....-...++...|+|.-.
T Consensus 60 ~----~~-~~~----~~-----~~~~l~~~lr~~~yD~vidl~~~~~s~~l~~~~~~~~ri 106 (348)
T PRK10916 60 G----HG-ALE----IG-----ERRRLGHSLREKRYDRAYVLPNSFKSALVPFFAGIPHRT 106 (348)
T ss_pred c----cc-hhh----hH-----HHHHHHHHHHhcCCCEEEECCCcHHHHHHHHHcCCCeEe
Confidence 0 00 000 00 012344567778999988655555666778888888553
No 140
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.29 E-value=0.18 Score=50.38 Aligned_cols=136 Identities=15% Similarity=0.097 Sum_probs=86.3
Q ss_pred CCCcEEEEeecCcccCCHHHHHHHHHHHhcCCCCEEEEEcCCCCCCCccc-cCchhhhh-hcCCCceEEecccchHH---
Q 036520 281 KPRSVVFVGFGSECKLSKDQVYEIAYGLELSGLPFLWALRKPEWATDDVD-ALPLGFAD-TIRGKGIVSIGWAPQLE--- 355 (473)
Q Consensus 281 ~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~-~~p~~~~~-~~~~~nv~~~~~~pq~~--- 355 (473)
+++.+||+||+...+..++.+..-..=|+..+--++|..+++..+ +.. .+-+-+++ ......+++.+-.|..+
T Consensus 427 p~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~~--~~~~~l~~la~~~Gv~~eRL~f~p~~~~~~h~a 504 (620)
T COG3914 427 PEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDDA--EINARLRDLAEREGVDSERLRFLPPAPNEDHRA 504 (620)
T ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCCcH--HHHHHHHHHHHHcCCChhheeecCCCCCHHHHH
Confidence 456699999999999999988887777778888899998875322 111 11111111 11345677777766543
Q ss_pred HhhCCCcceee---eccCchhHHHHHhhCCceecccccccccc---ceeeeeecceEEEEecCCCCCcCHHHHHHHHH
Q 036520 356 ILAHPSIGTSL---FHAGWGSVIETLQFGHSLVVLPLIIDQPL---NARLLVDKDLAVQVERKDDGSFTRDGIAKALR 427 (473)
Q Consensus 356 ll~~~~~~~~I---tHGG~~s~~eal~~GvP~l~~P~~~DQ~~---na~~v~~~G~G~~l~~~~~~~~t~~~l~~~i~ 427 (473)
=+..+++ |+ --||..|+.|+|-.|||||..+ ++|+- -+..+..+|+--.+-.+ .++-++.+|+
T Consensus 505 ~~~iADl--vLDTyPY~g~TTa~daLwm~vPVlT~~--G~~FasR~~~si~~~agi~e~vA~s-----~~dYV~~av~ 573 (620)
T COG3914 505 RYGIADL--VLDTYPYGGHTTASDALWMGVPVLTRV--GEQFASRNGASIATNAGIPELVADS-----RADYVEKAVA 573 (620)
T ss_pred hhchhhe--eeecccCCCccchHHHHHhcCceeeec--cHHHHHhhhHHHHHhcCCchhhcCC-----HHHHHHHHHH
Confidence 3345555 66 4699999999999999999875 55553 22334444554444332 3445666664
No 141
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=95.02 E-value=1.3 Score=42.00 Aligned_cols=40 Identities=28% Similarity=0.274 Sum_probs=33.9
Q ss_pred cchHHHhhCCCcceeeeccCchhHHHHHhhCCceecccccc
Q 036520 351 APQLEILAHPSIGTSLFHAGWGSVIETLQFGHSLVVLPLII 391 (473)
Q Consensus 351 ~pq~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P~~~ 391 (473)
-|...+|+.++. +|||--..+.+.||+..|+|+.++|+-.
T Consensus 220 nPy~~~La~ad~-i~VT~DSvSMvsEA~~tG~pV~v~~l~~ 259 (311)
T PF06258_consen 220 NPYLGFLAAADA-IVVTEDSVSMVSEAAATGKPVYVLPLPG 259 (311)
T ss_pred CcHHHHHHhCCE-EEEcCccHHHHHHHHHcCCCEEEecCCC
Confidence 367889998887 5677777799999999999999999875
No 142
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=94.77 E-value=2.6 Score=39.33 Aligned_cols=44 Identities=16% Similarity=0.206 Sum_probs=38.7
Q ss_pred EEEEecCCCccChHHHHHHHHHHHhC--CCeEEEEeCCCccccCCC
Q 036520 6 HVVMLPWSAFGHLMPFFQLSIALAKS--GVKVSFISTPKNIQRLPK 49 (473)
Q Consensus 6 ~vl~~~~~~~gH~~p~l~la~~L~~~--Gh~Vt~~~~~~~~~~~~~ 49 (473)
|||++-..+.|++.-+.++.++|+++ +-+|++++.+...+.++.
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~~ 46 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLEL 46 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHhc
Confidence 58899999999999999999999997 489999999887776655
No 143
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=94.63 E-value=3.6 Score=39.62 Aligned_cols=101 Identities=17% Similarity=0.118 Sum_probs=67.9
Q ss_pred EEEEecCCCccChHHHHHHHHHHHhC--CCeEEEEeCCCccccCCCCCCCcccCCCeEE-EEecCCccccccccCCCCCC
Q 036520 6 HVVMLPWSAFGHLMPFFQLSIALAKS--GVKVSFISTPKNIQRLPKPAPESEVAALINF-VEFPLPASAALDDKLLLPEG 82 (473)
Q Consensus 6 ~vl~~~~~~~gH~~p~l~la~~L~~~--Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~i~~-~~i~~~~~~~~~~~~~l~~~ 82 (473)
||||+-..+-|++.-+.++.++|++. +.+|++++.+.+...++.. +.++- ..++ . ..+
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~-------p~id~v~~~~----------~--~~~ 61 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLLERM-------PEIRQAIDMP----------L--GHG 61 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHHHhcC-------chhceeeecC----------C--ccc
Confidence 58999999999999999999999997 8999999988776666543 33322 1111 0 000
Q ss_pred CccCCCCChhhHHHHHHHHhhhhhHHHHHHHhCCCcEEEEcCCcchHHHHHHHcCCCeE
Q 036520 83 AEATVDIPSENIQYLKIAYDLLQHPFKQFVAQQSVDWIIVDVMSHWAGKIAQEYHVPLL 141 (473)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgiP~v 141 (473)
... + . ....+...++..++|++|.-........++...++|.-
T Consensus 62 -------~~~---~-~-----~~~~~~~~lr~~~yD~vi~l~~~~~s~ll~~~~~~~~r 104 (334)
T TIGR02195 62 -------ALE---L-T-----ERRRLGRSLREERYDQAIVLPNSLKSALIPFFAGIPHR 104 (334)
T ss_pred -------chh---h-h-----HHHHHHHHHhhcCCCEEEECCCCHHHHHHHHHcCCCce
Confidence 000 0 0 11234456677899999987666666677788888854
No 144
>PLN02939 transferase, transferring glycosyl groups
Probab=94.43 E-value=1.5 Score=47.55 Aligned_cols=83 Identities=14% Similarity=0.084 Sum_probs=54.5
Q ss_pred CCceEEecccchH---HHhhCCCcceeeec---cC-chhHHHHHhhCCceecccccc--ccccc--eeee-eecceEEEE
Q 036520 342 GKGIVSIGWAPQL---EILAHPSIGTSLFH---AG-WGSVIETLQFGHSLVVLPLII--DQPLN--ARLL-VDKDLAVQV 409 (473)
Q Consensus 342 ~~nv~~~~~~pq~---~ll~~~~~~~~ItH---GG-~~s~~eal~~GvP~l~~P~~~--DQ~~n--a~~v-~~~G~G~~l 409 (473)
.++|.+..+.+.. .+++.+++ ||.- =| ..+.+||+++|+|.|+....+ |--.+ ...+ +.-+-|..+
T Consensus 836 ~drV~FlG~~de~lah~IYAaADI--FLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf 913 (977)
T PLN02939 836 NNNIRLILKYDEALSHSIYAASDM--FIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTF 913 (977)
T ss_pred CCeEEEEeccCHHHHHHHHHhCCE--EEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEe
Confidence 3578888888764 57888888 7753 22 358999999999999876543 22111 1111 122567776
Q ss_pred ecCCCCCcCHHHHHHHHHHHhc
Q 036520 410 ERKDDGSFTRDGIAKALRLATV 431 (473)
Q Consensus 410 ~~~~~~~~t~~~l~~~i~~ll~ 431 (473)
+.. +.+.+.++|.+++.
T Consensus 914 ~~~-----D~eaLa~AL~rAL~ 930 (977)
T PLN02939 914 LTP-----DEQGLNSALERAFN 930 (977)
T ss_pred cCC-----CHHHHHHHHHHHHH
Confidence 653 78888888888764
No 145
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=93.97 E-value=0.33 Score=36.68 Aligned_cols=82 Identities=10% Similarity=0.131 Sum_probs=50.0
Q ss_pred ccCchhHHHHHhhCCceeccccccccccceeeeeecceEEEEecCCCCCcCHHHHHHHHHHHhcCcchHHHHH-HHHHHH
Q 036520 368 HAGWGSVIETLQFGHSLVVLPLIIDQPLNARLLVDKDLAVQVERKDDGSFTRDGIAKALRLATVSEEGEKLRV-RAREAA 446 (473)
Q Consensus 368 HGG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~-~a~~~~ 446 (473)
+|-..-+.|++++|+|+|+-.. ......+.+---++.. . +.+++.++|..+++ |+..++ -+++..
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~~~~~~~~~~~------~-~~~el~~~i~~ll~---~~~~~~~ia~~a~ 74 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREIFEDGEHIITY------N-DPEELAEKIEYLLE---NPEERRRIAKNAR 74 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHHcCCCCeEEEE------C-CHHHHHHHHHHHHC---CHHHHHHHHHHHH
Confidence 4555689999999999999865 1111111111122222 2 78999999999999 665444 444444
Q ss_pred HHhccCCCcHHHHHHHH
Q 036520 447 NTFNDKKLHDDYSVRFV 463 (473)
Q Consensus 447 ~~~~~~~~~~~~~~~~~ 463 (473)
+...+.-..+..++.|+
T Consensus 75 ~~v~~~~t~~~~~~~il 91 (92)
T PF13524_consen 75 ERVLKRHTWEHRAEQIL 91 (92)
T ss_pred HHHHHhCCHHHHHHHHH
Confidence 55554445555555554
No 146
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=93.93 E-value=1.8 Score=43.28 Aligned_cols=138 Identities=9% Similarity=0.056 Sum_probs=85.7
Q ss_pred CCcEEEEeecCcccCCHHHHHHHHHHHhc-CCCCEEEEEcCCCCCCCccccCchhhhhhcCCCceEEe-cccc-h-HHHh
Q 036520 282 PRSVVFVGFGSECKLSKDQVYEIAYGLEL-SGLPFLWALRKPEWATDDVDALPLGFADTIRGKGIVSI-GWAP-Q-LEIL 357 (473)
Q Consensus 282 ~~~~V~vs~Gs~~~~~~~~~~~~~~al~~-~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~-~~~p-q-~~ll 357 (473)
++..++++ +.+.++.+....++ ++..|-+..... ..+.+.+..+-+|+++. ++.+ + .+++
T Consensus 282 ~~~~l~~t-------~s~~I~~i~~Lv~~lPd~~f~Iga~te---------~s~kL~~L~~y~nvvly~~~~~~~l~~ly 345 (438)
T TIGR02919 282 RKQALILT-------NSDQIEHLEEIVQALPDYHFHIAALTE---------MSSKLMSLDKYDNVKLYPNITTQKIQELY 345 (438)
T ss_pred cccEEEEC-------CHHHHHHHHHHHHhCCCcEEEEEecCc---------ccHHHHHHHhcCCcEEECCcChHHHHHHH
Confidence 34477776 24555555555544 567777644332 01122221122577665 4567 3 8999
Q ss_pred hCCCcceeeeccCc--hhHHHHHhhCCceeccccccccccceeeeeecceEEEEecCCCCCcCHHHHHHHHHHHhcCcch
Q 036520 358 AHPSIGTSLFHAGW--GSVIETLQFGHSLVVLPLIIDQPLNARLLVDKDLAVQVERKDDGSFTRDGIAKALRLATVSEEG 435 (473)
Q Consensus 358 ~~~~~~~~ItHGG~--~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~t~~~l~~~i~~ll~~~~~ 435 (473)
..|++-+-|+||.. .++.||+.+|+|++..=..... ...+.. |-..... +.+++.++|.++|. +
T Consensus 346 ~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~~---~~~i~~---g~l~~~~-----~~~~m~~~i~~lL~---d 411 (438)
T TIGR02919 346 QTCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAHN---RDFIAS---ENIFEHN-----EVDQLISKLKDLLN---D 411 (438)
T ss_pred HhccEEEEccccccHHHHHHHHHHcCCcEEEEecccCC---cccccC---CceecCC-----CHHHHHHHHHHHhc---C
Confidence 99999999999875 7999999999999987654321 122222 4444443 68999999999999 6
Q ss_pred HHHHHHHHHHHHHh
Q 036520 436 EKLRVRAREAANTF 449 (473)
Q Consensus 436 ~~~~~~a~~~~~~~ 449 (473)
++-.+.+...++..
T Consensus 412 ~~~~~~~~~~q~~~ 425 (438)
T TIGR02919 412 PNQFRELLEQQREH 425 (438)
T ss_pred HHHHHHHHHHHHHH
Confidence 64444444444443
No 147
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=93.81 E-value=0.41 Score=48.95 Aligned_cols=103 Identities=11% Similarity=0.029 Sum_probs=71.0
Q ss_pred CceEEecccc--h-HHHhhCCCcceeeecc---CchhHHHHHhhCCceeccccccccccceeeeeecceEEEEecCCCCC
Q 036520 343 KGIVSIGWAP--Q-LEILAHPSIGTSLFHA---GWGSVIETLQFGHSLVVLPLIIDQPLNARLLVDKDLAVQVERKDDGS 416 (473)
Q Consensus 343 ~nv~~~~~~p--q-~~ll~~~~~~~~ItHG---G~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~ 416 (473)
..|.+.++.. + ..++.++++ +|.=+ |.++..||+.+|+|+| .......|++..=|..+ .
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~arl--~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V~d~~NG~li--~---- 473 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLRL--IIDLSKEPDLYTQISGISAGIPQI-------NKVETDYVEHNKNGYII--D---- 473 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhheE--EEECCCCCChHHHHHHHHcCCCee-------ecCCceeeEcCCCcEEe--C----
Confidence 4677888877 4 677777777 77665 6679999999999999 44455666666556555 2
Q ss_pred cCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHhccCCCcHHHHHHHHH
Q 036520 417 FTRDGIAKALRLATVSEEGEKLRVRAREAANTFNDKKLHDDYSVRFVE 464 (473)
Q Consensus 417 ~t~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 464 (473)
+..+|.++|..+|. +.+-.+++..-+-...+.=+++..+..|-+
T Consensus 474 -d~~~l~~al~~~L~---~~~~wn~~~~~sy~~~~~yS~~~i~~kW~~ 517 (519)
T TIGR03713 474 -DISELLKALDYYLD---NLKNWNYSLAYSIKLIDDYSSENIIERLNE 517 (519)
T ss_pred -CHHHHHHHHHHHHh---CHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 67899999999999 665555555444444433344555555543
No 148
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=93.72 E-value=0.25 Score=42.27 Aligned_cols=117 Identities=11% Similarity=0.119 Sum_probs=60.8
Q ss_pred ecCCCccChHHHHHHHHHH-HhC-CCeEEEEeCCCccccCCCCCCCcccCCCeEEEEecCCccccccccCCCCCCCccCC
Q 036520 10 LPWSAFGHLMPFFQLSIAL-AKS-GVKVSFISTPKNIQRLPKPAPESEVAALINFVEFPLPASAALDDKLLLPEGAEATV 87 (473)
Q Consensus 10 ~~~~~~gH~~p~l~la~~L-~~~-Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~l~~~~~~~~ 87 (473)
+..++.||+.-|+.|.+.+ .++ .++..+++..+..+..+...-.........+..++ ...
T Consensus 3 ~v~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~~~~~~~~~~~~~~~~~------------------r~r 64 (170)
T PF08660_consen 3 VVLGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAEQLEKSSSKRHKILEIP------------------RAR 64 (170)
T ss_pred EEEcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHHHHHHhccccceeeccc------------------eEE
Confidence 3456889999999999999 333 46655666554433211000000000001222222 111
Q ss_pred CCChhhHHHHHHHHhhhhhHHHHHHHhCCCcEEEEcCC--cchHHHHHHHc------CCCeEEEec
Q 036520 88 DIPSENIQYLKIAYDLLQHPFKQFVAQQSVDWIIVDVM--SHWAGKIAQEY------HVPLLLFSA 145 (473)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~--~~~~~~~A~~l------giP~v~~~~ 145 (473)
....................+ .++...+||+||+..- +.....+|+.+ |.+.|.+-+
T Consensus 65 ~v~q~~~~~~~~~l~~~~~~~-~il~r~rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES 129 (170)
T PF08660_consen 65 EVGQSYLTSIFTTLRAFLQSL-RILRRERPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIES 129 (170)
T ss_pred EechhhHhhHHHHHHHHHHHH-HHHHHhCCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEe
Confidence 112222222333333344443 3445558999999963 34555778888 999888744
No 149
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.65 E-value=0.29 Score=49.31 Aligned_cols=127 Identities=22% Similarity=0.201 Sum_probs=81.2
Q ss_pred CCcEEEEeecCcccCCHHHHHHHHHHHhcCCCCEEEEEcCCCCCCCccccCchhhhhhcCCCceEEecccchHH-----H
Q 036520 282 PRSVVFVGFGSECKLSKDQVYEIAYGLELSGLPFLWALRKPEWATDDVDALPLGFADTIRGKGIVSIGWAPQLE-----I 356 (473)
Q Consensus 282 ~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~-----l 356 (473)
++.+||.+|--.-.++++.++.-++-|.+.+.-++|.++.+-..+ ....--...-....+.+++.+-+.-.+ .
T Consensus 757 ~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~ge--~rf~ty~~~~Gl~p~riifs~va~k~eHvrr~~ 834 (966)
T KOG4626|consen 757 EDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGE--QRFRTYAEQLGLEPDRIIFSPVAAKEEHVRRGQ 834 (966)
T ss_pred CCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEeccccch--HHHHHHHHHhCCCccceeeccccchHHHHHhhh
Confidence 345999999988889999999988888888999999998754331 000000000011234677666555433 3
Q ss_pred hhCCCcceeeeccCchhHHHHHhhCCceecccccccccc-ceeeeeecceEEEEec
Q 036520 357 LAHPSIGTSLFHAGWGSVIETLQFGHSLVVLPLIIDQPL-NARLLVDKDLAVQVER 411 (473)
Q Consensus 357 l~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P~~~DQ~~-na~~v~~~G~G~~l~~ 411 (473)
|..-.++-+.|. |..|.++.|..|||||.+|.-.--.. -+..+...|+|-.+-+
T Consensus 835 LaDv~LDTplcn-GhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl~hliak 889 (966)
T KOG4626|consen 835 LADVCLDTPLCN-GHTTGMDVLWAGVPMVTMPGETLASRVAASLLTALGLGHLIAK 889 (966)
T ss_pred hhhhcccCcCcC-CcccchhhhccCCceeecccHHHHHHHHHHHHHHcccHHHHhh
Confidence 333344446676 58899999999999999997432222 2233556688875443
No 150
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=93.60 E-value=1.3 Score=37.79 Aligned_cols=94 Identities=16% Similarity=0.148 Sum_probs=52.1
Q ss_pred hCCCeEEEEeCCCccccCCCCCCCcccCCCeEEEEecCCccccccccCCCCCCCccCCCCChhhHHHHHHHHhhhhhHHH
Q 036520 30 KSGVKVSFISTPKNIQRLPKPAPESEVAALINFVEFPLPASAALDDKLLLPEGAEATVDIPSENIQYLKIAYDLLQHPFK 109 (473)
Q Consensus 30 ~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 109 (473)
++||+|+|++........ ++++...+..+.. -..+... ....+..-....+...+.+.
T Consensus 1 q~gh~v~fl~~~~~~~~~----------~GV~~~~y~~~~~--------~~~~~~~----~~~~~e~~~~rg~av~~a~~ 58 (171)
T PF12000_consen 1 QRGHEVVFLTERKRPPIP----------PGVRVVRYRPPRG--------PTPGTHP----YVRDFEAAVLRGQAVARAAR 58 (171)
T ss_pred CCCCEEEEEecCCCCCCC----------CCcEEEEeCCCCC--------CCCCCCc----ccccHHHHHHHHHHHHHHHH
Confidence 479999999954433221 3778887763211 0000000 00001111112223455555
Q ss_pred HHHHh-CCCcEEEEcCCcchHHHHHHHc-CCCeEEEec
Q 036520 110 QFVAQ-QSVDWIIVDVMSHWAGKIAQEY-HVPLLLFSA 145 (473)
Q Consensus 110 ~ll~~-~~pD~vI~D~~~~~~~~~A~~l-giP~v~~~~ 145 (473)
++-++ +.||+||+...--.++-+-+.+ ++|.+.+.-
T Consensus 59 ~L~~~Gf~PDvI~~H~GWGe~Lflkdv~P~a~li~Y~E 96 (171)
T PF12000_consen 59 QLRAQGFVPDVIIAHPGWGETLFLKDVFPDAPLIGYFE 96 (171)
T ss_pred HHHHcCCCCCEEEEcCCcchhhhHHHhCCCCcEEEEEE
Confidence 65544 5789999997555666677888 899888744
No 151
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=93.58 E-value=7.3 Score=37.52 Aligned_cols=105 Identities=12% Similarity=0.044 Sum_probs=71.8
Q ss_pred ccEEEEecCCCccChHHHHHHHHHHHhC--CCeEEEEeCCCccccCCCCCCCcccCCCeEEEEecCCccccccccCCCCC
Q 036520 4 KLHVVMLPWSAFGHLMPFFQLSIALAKS--GVKVSFISTPKNIQRLPKPAPESEVAALINFVEFPLPASAALDDKLLLPE 81 (473)
Q Consensus 4 ~~~vl~~~~~~~gH~~p~l~la~~L~~~--Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~l~~ 81 (473)
.|+|+++-...-|++.-..++-+.|+++ +.++++++...+.+.+... +.|+-+.+- +.
T Consensus 1 ~~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~i~~~~-------p~I~~vi~~----------~~--- 60 (334)
T COG0859 1 MMKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAPILKLN-------PEIDKVIII----------DK--- 60 (334)
T ss_pred CceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccchHHHHhcC-------hHhhhhccc----------cc---
Confidence 3789999999999999999999999998 5999999988877766553 233222110 00
Q ss_pred CCccCCCCChhhHHHHHHHHhhhhhHHHHHHHhCCCcEEEEcCCcchHHHHHHHcCCCeEE
Q 036520 82 GAEATVDIPSENIQYLKIAYDLLQHPFKQFVAQQSVDWIIVDVMSHWAGKIAQEYHVPLLL 142 (473)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~ 142 (473)
.... .. -.....+.+.++..++|+||.=.-.+-...++...++|.-.
T Consensus 61 --~~~~---~~---------~~~~~~l~~~lr~~~yD~vidl~~~~ksa~l~~~~~~~~r~ 107 (334)
T COG0859 61 --KKKG---LG---------LKERLALLRTLRKERYDAVIDLQGLLKSALLALLLGIPFRI 107 (334)
T ss_pred --cccc---cc---------hHHHHHHHHHhhccCCCEEEECcccHHHHHHHHHhCCCccc
Confidence 0000 00 01123456677788999999877667777777788888553
No 152
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=92.96 E-value=1.8 Score=39.18 Aligned_cols=113 Identities=13% Similarity=0.161 Sum_probs=63.5
Q ss_pred cEEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCcccCCCeEEEEecCCccccccccCCCCCCCc
Q 036520 5 LHVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPKNIQRLPKPAPESEVAALINFVEFPLPASAALDDKLLLPEGAE 84 (473)
Q Consensus 5 ~~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~l~~~~~ 84 (473)
||||+.--=+ =|---+..|++.|. .+++|+++.+....+-+-... .....++...+. . ...
T Consensus 1 mrILlTNDDG-i~a~Gi~aL~~al~-~~~dV~VVAP~~~qSg~s~sl---Tl~~Plr~~~~~----------~----~~~ 61 (252)
T COG0496 1 MRILLTNDDG-IHAPGIRALARALR-EGADVTVVAPDREQSGASHSL---TLHEPLRVRQVD----------N----GAY 61 (252)
T ss_pred CeEEEecCCc-cCCHHHHHHHHHHh-hCCCEEEEccCCCCccccccc---ccccCceeeEec----------c----ceE
Confidence 4555543322 23334677888887 999999999887665443321 122334443332 1 111
Q ss_pred cCCCCChhhHHHHHHHHhhhhhHHHHHHHhCCCcEEEEcCC-------------cchHHHHHHHcCCCeEEEecc
Q 036520 85 ATVDIPSENIQYLKIAYDLLQHPFKQFVAQQSVDWIIVDVM-------------SHWAGKIAQEYHVPLLLFSAF 146 (473)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~-------------~~~~~~~A~~lgiP~v~~~~~ 146 (473)
.....+.+. ..-.+..++++..||+||+-.. +.+|+.=|..+|||.|.++-.
T Consensus 62 av~GTPaDC----------V~lal~~l~~~~~pDLVvSGIN~G~Nlg~dv~ySGTVaaA~Ea~~~GipsIA~S~~ 126 (252)
T COG0496 62 AVNGTPADC----------VILGLNELLKEPRPDLVVSGINAGANLGDDVIYSGTVAAAMEAALLGIPAIAISLA 126 (252)
T ss_pred EecCChHHH----------HHHHHHHhccCCCCCEEEeCccCCCccccceeeeehHHHHHHHHHcCccceeeeeh
Confidence 111222221 2234567777778999997531 223444467999999998653
No 153
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=92.39 E-value=3.6 Score=37.64 Aligned_cols=118 Identities=14% Similarity=0.213 Sum_probs=63.1
Q ss_pred CCccEEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCcccCCCeEEEEecCCccccccccCCCCC
Q 036520 2 ARKLHVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPKNIQRLPKPAPESEVAALINFVEFPLPASAALDDKLLLPE 81 (473)
Q Consensus 2 ~~~~~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~l~~ 81 (473)
.++||||+.--=+. |---+..|+++|.+.| +|+++.+....+-.-... .....+++..+... .+..
T Consensus 3 ~~~M~ILltNDDGi-~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~g~ai---t~~~pl~~~~~~~~--------~~~~- 68 (257)
T PRK13932 3 DKKPHILVCNDDGI-EGEGIHVLAASMKKIG-RVTVVAPAEPHSGMSHAM---TLGVPLRIKEYQKN--------NRFF- 68 (257)
T ss_pred CCCCEEEEECCCCC-CCHHHHHHHHHHHhCC-CEEEEcCCCCCCCCcccc---cCCCCeEEEEEccC--------CCce-
Confidence 36789888665333 1234778899998878 799888776554332211 22234555544310 0000
Q ss_pred CCccCCCCChhhHHHHHHHHhhhhhHHHHHHHhCCCcEEEEcC----------C---cchHHHHHHHcCCCeEEEec
Q 036520 82 GAEATVDIPSENIQYLKIAYDLLQHPFKQFVAQQSVDWIIVDV----------M---SHWAGKIAQEYHVPLLLFSA 145 (473)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~----------~---~~~~~~~A~~lgiP~v~~~~ 145 (473)
. ......|.+. ..-.+..++ ..+||+||+-. + +.+|+.-|..+|||.+.++.
T Consensus 69 ~-y~v~GTPaDC----------V~lal~~~~-~~~pDLVvSGIN~G~N~G~dv~ySGTVgAA~Ea~~~GiPsIA~S~ 133 (257)
T PRK13932 69 G-YTVSGTPVDC----------IKVALSHIL-PEKPDLIVSGINYGSNTATNTLYSGTVAAALEGAIQGIPSLAFSL 133 (257)
T ss_pred E-EEEcCcHHHH----------HHHHHHhhc-CCCCCEEEECCcCCCCCCcCEecchhHHHHHHHHHcCCCeEEEEc
Confidence 0 0011222211 111223333 34799999753 1 23445556789999999865
No 154
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=92.12 E-value=7.5 Score=36.55 Aligned_cols=113 Identities=16% Similarity=0.262 Sum_probs=65.4
Q ss_pred CCceEEecccch---HHHhhCCCcceeeec---cCch-hHHHHHhhCCceeccccccccccceeeeeecceEEEEecCCC
Q 036520 342 GKGIVSIGWAPQ---LEILAHPSIGTSLFH---AGWG-SVIETLQFGHSLVVLPLIIDQPLNARLLVDKDLAVQVERKDD 414 (473)
Q Consensus 342 ~~nv~~~~~~pq---~~ll~~~~~~~~ItH---GG~~-s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~ 414 (473)
..++.+.+++++ ..++..+++ ++.- .|.| ++.||+++|+|+|..... .....+.+.+.|. +...
T Consensus 256 ~~~v~~~g~~~~~~~~~~~~~~~~--~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~~----~~~e~~~~~~~g~-~~~~-- 326 (381)
T COG0438 256 EDNVKFLGYVPDEELAELLASADV--FVLPSLSEGFGLVLLEAMAAGTPVIASDVG----GIPEVVEDGETGL-LVPP-- 326 (381)
T ss_pred CCcEEEecccCHHHHHHHHHhCCE--EEeccccccchHHHHHHHhcCCcEEECCCC----ChHHHhcCCCceE-ecCC--
Confidence 367888899882 456776766 5554 3554 469999999999766543 2222222222465 3332
Q ss_pred CCcCHHHHHHHHHHHhcCcchHHHHHHHHH-HHHHhccCCCcHHHHHHHHHHHHH
Q 036520 415 GSFTRDGIAKALRLATVSEEGEKLRVRARE-AANTFNDKKLHDDYSVRFVEYLKI 468 (473)
Q Consensus 415 ~~~t~~~l~~~i~~ll~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~ 468 (473)
...+++..++..+++ +.+.++.... ..+...+.-+.......+.+.+..
T Consensus 327 --~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (381)
T COG0438 327 --GDVEELADALEQLLE---DPELREELGEAARERVEEEFSWERIAEQLLELYEE 376 (381)
T ss_pred --CCHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 268899999999998 5544444443 333332222334444555554443
No 155
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=92.00 E-value=1.4 Score=37.27 Aligned_cols=30 Identities=30% Similarity=0.274 Sum_probs=23.2
Q ss_pred CccChHHHHHHHHHHHhCCCeEEEEeCCCc
Q 036520 14 AFGHLMPFFQLSIALAKSGVKVSFISTPKN 43 (473)
Q Consensus 14 ~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~ 43 (473)
..|=-.-+..|+++|+++||+|++++....
T Consensus 11 ~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~ 40 (177)
T PF13439_consen 11 IGGAERVVLNLARALAKRGHEVTVVSPGVK 40 (177)
T ss_dssp SSHHHHHHHHHHHHHHHTT-EEEEEESS-T
T ss_pred CChHHHHHHHHHHHHHHCCCEEEEEEcCCC
Confidence 336667799999999999999999986543
No 156
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=90.55 E-value=13 Score=33.79 Aligned_cols=38 Identities=18% Similarity=0.314 Sum_probs=29.8
Q ss_pred cccchHHHhhCCCcceeeeccCchhHHHHHhhCCceecc
Q 036520 349 GWAPQLEILAHPSIGTSLFHAGWGSVIETLQFGHSLVVL 387 (473)
Q Consensus 349 ~~~pq~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~ 387 (473)
++-|+.+.|+.++. .++|--..|...||...|+|+.++
T Consensus 234 g~NPY~~~La~Ady-ii~TaDSinM~sEAasTgkPv~~~ 271 (329)
T COG3660 234 GYNPYIDMLAAADY-IISTADSINMCSEAASTGKPVFIL 271 (329)
T ss_pred CCCchHHHHhhcce-EEEecchhhhhHHHhccCCCeEEE
Confidence 56689999988876 345555668999999999998654
No 157
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=89.26 E-value=4.1 Score=37.49 Aligned_cols=39 Identities=18% Similarity=0.415 Sum_probs=28.5
Q ss_pred HHHHHHHhCCCcEEEEcCCcc------hHHHHHHHcCCCeEEEec
Q 036520 107 PFKQFVAQQSVDWIIVDVMSH------WAGKIAQEYHVPLLLFSA 145 (473)
Q Consensus 107 ~l~~ll~~~~pD~vI~D~~~~------~~~~~A~~lgiP~v~~~~ 145 (473)
.+.+++++.++|+||--.+.+ -+..+++.+|||++.+--
T Consensus 56 ~l~~~l~~~~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~eR 100 (256)
T TIGR00715 56 ELREFLKRHSIDILVDATHPFAAQITTNATAVCKELGIPYVRFER 100 (256)
T ss_pred HHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEEEC
Confidence 356788899999877544333 345688999999998843
No 158
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=89.17 E-value=10 Score=34.71 Aligned_cols=40 Identities=10% Similarity=0.089 Sum_probs=26.2
Q ss_pred cEEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCCcccc
Q 036520 5 LHVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPKNIQR 46 (473)
Q Consensus 5 ~~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~ 46 (473)
||||+.--=+. |---+..|+++|.+ +|+|+++.+....+-
T Consensus 1 M~ILvtNDDGi-~apGl~aL~~~l~~-~~~V~VvAP~~~~Sg 40 (253)
T PRK13933 1 MNILLTNDDGI-NAEGINTLAELLSK-YHEVIIVAPENQRSA 40 (253)
T ss_pred CeEEEEcCCCC-CChhHHHHHHHHHh-CCcEEEEccCCCCcc
Confidence 56666554333 22227788899964 689999987766553
No 159
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=88.76 E-value=2.8 Score=42.24 Aligned_cols=103 Identities=17% Similarity=0.122 Sum_probs=65.4
Q ss_pred ecccchH---HHhhCCCcceeee---ccCc-hhHHHHHhhCCc----eeccccccccccceeeeeecceEEEEecCCCCC
Q 036520 348 IGWAPQL---EILAHPSIGTSLF---HAGW-GSVIETLQFGHS----LVVLPLIIDQPLNARLLVDKDLAVQVERKDDGS 416 (473)
Q Consensus 348 ~~~~pq~---~ll~~~~~~~~It---HGG~-~s~~eal~~GvP----~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~ 416 (473)
...+++. +++..+++ |+. +=|+ .++.||+++|+| +|+--+.+-- ..+ +-|+.++..
T Consensus 341 ~~~~~~~el~aly~aaDv--~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~----~~l---~~gllVnP~---- 407 (456)
T TIGR02400 341 NRSYDREELMALYRAADV--GLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGAA----QEL---NGALLVNPY---- 407 (456)
T ss_pred cCCCCHHHHHHHHHhCcE--EEECccccccCccHHHHHHhcCCCCceEEEeCCCCCh----HHh---CCcEEECCC----
Confidence 3456664 45778888 664 4465 588899999999 6655554321 112 236666554
Q ss_pred cCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHhccCCCcHHHHHHHHHHH
Q 036520 417 FTRDGIAKALRLATVSEEGEKLRVRAREAANTFNDKKLHDDYSVRFVEYL 466 (473)
Q Consensus 417 ~t~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 466 (473)
+.++++++|.++|+.. .++-+++.+++.+.+.. -+...-++.+++.+
T Consensus 408 -d~~~lA~aI~~aL~~~-~~er~~r~~~~~~~v~~-~~~~~W~~~~l~~l 454 (456)
T TIGR02400 408 -DIDGMADAIARALTMP-LEEREERHRAMMDKLRK-NDVQRWREDFLSDL 454 (456)
T ss_pred -CHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHhh-CCHHHHHHHHHHHh
Confidence 8899999999999732 34667777777777653 33444444444433
No 160
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=88.07 E-value=12 Score=34.15 Aligned_cols=41 Identities=10% Similarity=0.057 Sum_probs=26.7
Q ss_pred cEEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCCccccC
Q 036520 5 LHVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPKNIQRL 47 (473)
Q Consensus 5 ~~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~ 47 (473)
||||+.--=+. |---+..|+++|. .+|+|+++.+....+-.
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~-~~~~V~VvAP~~~qSg~ 41 (253)
T PRK13935 1 MNILVTNDDGI-TSPGIIILAEYLS-EKHEVFVVAPDKERSAT 41 (253)
T ss_pred CeEEEECCCCC-CCHHHHHHHHHHH-hCCcEEEEccCCCCccc
Confidence 56666654333 2233777888886 46899999877655433
No 161
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=87.52 E-value=2 Score=43.44 Aligned_cols=99 Identities=16% Similarity=0.143 Sum_probs=58.6
Q ss_pred Eecccch---HHHhhCCCcceeee---ccCc-hhHHHHHhhCCc----eecccccc--ccccceeeeeecceEEEEecCC
Q 036520 347 SIGWAPQ---LEILAHPSIGTSLF---HAGW-GSVIETLQFGHS----LVVLPLII--DQPLNARLLVDKDLAVQVERKD 413 (473)
Q Consensus 347 ~~~~~pq---~~ll~~~~~~~~It---HGG~-~s~~eal~~GvP----~l~~P~~~--DQ~~na~~v~~~G~G~~l~~~~ 413 (473)
+.+++++ ..++..+++ ||. +-|+ .++.||+++|+| +|+--..+ ++ ..-|+.++..
T Consensus 345 ~~g~v~~~el~~~y~~aDv--~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~~~~---------~~~g~lv~p~- 412 (460)
T cd03788 345 LYRSLPREELAALYRAADV--ALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGAAEE---------LSGALLVNPY- 412 (460)
T ss_pred EeCCCCHHHHHHHHHhccE--EEeCccccccCcccceeEEEecCCCceEEEeccccchhh---------cCCCEEECCC-
Confidence 3467776 455788888 663 4455 578999999999 54443322 33 1235556554
Q ss_pred CCCcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHhccCCCcHHHHHHHH
Q 036520 414 DGSFTRDGIAKALRLATVSEEGEKLRVRAREAANTFNDKKLHDDYSVRFV 463 (473)
Q Consensus 414 ~~~~t~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 463 (473)
+.++++++|.++++.. .++.+++.++..+.+. .-+...-++.++
T Consensus 413 ----d~~~la~ai~~~l~~~-~~e~~~~~~~~~~~v~-~~~~~~w~~~~l 456 (460)
T cd03788 413 ----DIDEVADAIHRALTMP-LEERRERHRKLREYVR-THDVQAWANSFL 456 (460)
T ss_pred ----CHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHH-hCCHHHHHHHHH
Confidence 7899999999999831 1234444444454543 223333334443
No 162
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=87.28 E-value=14 Score=33.77 Aligned_cols=111 Identities=10% Similarity=0.129 Sum_probs=59.0
Q ss_pred cEEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCcccCCCeEEEEecCCccccccccCCCCCCCc
Q 036520 5 LHVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPKNIQRLPKPAPESEVAALINFVEFPLPASAALDDKLLLPEGAE 84 (473)
Q Consensus 5 ~~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~l~~~~~ 84 (473)
||||+.--=+. |---+..|+++|.+. |+|+++.+....+-.-... .....+++..+. .+ ..
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~~-~~V~VvAP~~~qSg~g~ai---t~~~pl~~~~~~----------~~----~~ 61 (250)
T PRK00346 1 MRILLTNDDGI-HAPGIRALAEALREL-ADVTVVAPDRERSGASHSL---TLTRPLRVEKVD----------NG----FY 61 (250)
T ss_pred CeEEEECCCCC-CChhHHHHHHHHHhC-CCEEEEeCCCCCcCCcccc---cCCCCeEEEEec----------CC----eE
Confidence 56666544332 233477889999888 7999999876555443221 122334444432 11 01
Q ss_pred cCCCCChhhHHHHHHHHhhhhhHHHHHHHhCCCcEEEEcC----------C---cchHHHHHHHcCCCeEEEec
Q 036520 85 ATVDIPSENIQYLKIAYDLLQHPFKQFVAQQSVDWIIVDV----------M---SHWAGKIAQEYHVPLLLFSA 145 (473)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~----------~---~~~~~~~A~~lgiP~v~~~~ 145 (473)
.....|.+.. .-.+..++. .+||+||+-. + +..|+.-|-.+|||.+.++.
T Consensus 62 ~v~GTPaDcV----------~~gl~~l~~-~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~ 124 (250)
T PRK00346 62 AVDGTPTDCV----------HLALNGLLD-PKPDLVVSGINHGANLGDDVLYSGTVAAAMEGALLGIPAIAVSL 124 (250)
T ss_pred EECCcHHHHH----------HHHHHhhcc-CCCCEEEeCCccCCCCCCCeeccHHHHHHHHHHhcCCCeEEEec
Confidence 1112222111 112223332 4899999753 1 23444556789999999865
No 163
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=87.01 E-value=29 Score=33.11 Aligned_cols=127 Identities=15% Similarity=0.073 Sum_probs=75.1
Q ss_pred CCCccEEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCCcc--ccCCCCCCCcccCCCeEEEEecCCccccccccCC
Q 036520 1 MARKLHVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPKNI--QRLPKPAPESEVAALINFVEFPLPASAALDDKLL 78 (473)
Q Consensus 1 m~~~~~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~--~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~ 78 (473)
|.++.|+.++..|.-||-=+|-==|..|++.|.+|.++..-... +.+.. .++|+++.++.+... +.
T Consensus 9 ~~~k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p~e~l~~-------hprI~ih~m~~l~~~-----~~ 76 (444)
T KOG2941|consen 9 KSKKKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIPLEELLN-------HPRIRIHGMPNLPFL-----QG 76 (444)
T ss_pred ccccceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecCCCChHHHhc-------CCceEEEeCCCCccc-----CC
Confidence 45667999999999999999999999999999999998754332 11212 479999998743220 11
Q ss_pred CCCCCccCCCCChhhHHHHHHHHhhhhhHHHHHHHhCCCcEEEEcC-CcchHHHH----HHHcCCCeEEEecchhHH
Q 036520 79 LPEGAEATVDIPSENIQYLKIAYDLLQHPFKQFVAQQSVDWIIVDV-MSHWAGKI----AQEYHVPLLLFSAFSAAA 150 (473)
Q Consensus 79 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~-~~~~~~~~----A~~lgiP~v~~~~~~~~~ 150 (473)
. +.-.+..++..+ ....-+..++--.++|+++.-. -+.....+ ....|...++=|....+.
T Consensus 77 ~----------p~~~~l~lKvf~-Qfl~Ll~aL~~~~~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDWHNy~Ys 142 (444)
T KOG2941|consen 77 G----------PRVLFLPLKVFW-QFLSLLWALFVLRPPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDWHNYGYS 142 (444)
T ss_pred C----------chhhhhHHHHHH-HHHHHHHHHHhccCCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEehhhHHH
Confidence 1 111111111111 1111223333345779887762 22223333 345577788877766654
No 164
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=86.32 E-value=5.8 Score=37.76 Aligned_cols=41 Identities=24% Similarity=0.264 Sum_probs=32.4
Q ss_pred cEEEEecC-CCccChHHHHHHHHHHHhCCCeEEEEeCCCccc
Q 036520 5 LHVVMLPW-SAFGHLMPFFQLSIALAKSGVKVSFISTPKNIQ 45 (473)
Q Consensus 5 ~~vl~~~~-~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~ 45 (473)
+||+|++. |+-|=..-..++|-.|++.|++|.+++++...+
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhs 43 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHS 43 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCc
Confidence 57888777 566888888889999999999888887665443
No 165
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=85.43 E-value=1.3 Score=35.19 Aligned_cols=40 Identities=10% Similarity=0.066 Sum_probs=28.6
Q ss_pred cEEEEecCCCcc---ChHHHHHHHHHHHhCCCeEEEEeCCCcc
Q 036520 5 LHVVMLPWSAFG---HLMPFFQLSIALAKSGVKVSFISTPKNI 44 (473)
Q Consensus 5 ~~vl~~~~~~~g---H~~p~l~la~~L~~~Gh~Vt~~~~~~~~ 44 (473)
|||+|+.-|-.+ .-...+.|+.+.++|||+|.++......
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~dL~ 43 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQRRGHEVFYYEPGDLS 43 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GGGEE
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcCcEE
Confidence 688888887654 4568899999999999999998876543
No 166
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.38 E-value=2.4 Score=39.20 Aligned_cols=105 Identities=15% Similarity=0.064 Sum_probs=63.2
Q ss_pred cccchHHHhhCCCcceeeeccCchhHHHHHhhCCceecccccccccc--ceeeeeec-ceEEEEecCCCCCcCHHHHHHH
Q 036520 349 GWAPQLEILAHPSIGTSLFHAGWGSVIETLQFGHSLVVLPLIIDQPL--NARLLVDK-DLAVQVERKDDGSFTRDGIAKA 425 (473)
Q Consensus 349 ~~~pq~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P~~~DQ~~--na~~v~~~-G~G~~l~~~~~~~~t~~~l~~~ 425 (473)
.|-...++|.++++ .|--.|- .+-+++--|||+|.+|-.+-|+. -|.|=.++ |..+.+-.. ++..-..+
T Consensus 301 sqqsfadiLH~ada--algmAGT-AtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~~-----~aq~a~~~ 372 (412)
T COG4370 301 SQQSFADILHAADA--ALGMAGT-ATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVRP-----EAQAAAQA 372 (412)
T ss_pred eHHHHHHHHHHHHH--HHHhccc-hHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecCC-----chhhHHHH
Confidence 44444666666666 4433332 23446778999999999999987 45555555 888777654 33333344
Q ss_pred HHHHhcCcchHHHHHHHH-HHHHHhccCCCcHHHHHHHHHHHHH
Q 036520 426 LRLATVSEEGEKLRVRAR-EAANTFNDKKLHDDYSVRFVEYLKI 468 (473)
Q Consensus 426 i~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (473)
.++++. |+.+.++.+ -=++++-..+ ++..+.+.+.+
T Consensus 373 ~q~ll~---dp~r~~air~nGqrRiGqaG----aa~rIAe~l~e 409 (412)
T COG4370 373 VQELLG---DPQRLTAIRHNGQRRIGQAG----AARRIAEELGE 409 (412)
T ss_pred HHHHhc---ChHHHHHHHhcchhhccCcc----hHHHHHHHHHH
Confidence 555898 788877766 3344443333 44444444443
No 167
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=84.58 E-value=13 Score=33.80 Aligned_cols=115 Identities=13% Similarity=0.096 Sum_probs=59.7
Q ss_pred cEEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCcccCCCeEEEEecCCccccccccCCCCCCCc
Q 036520 5 LHVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPKNIQRLPKPAPESEVAALINFVEFPLPASAALDDKLLLPEGAE 84 (473)
Q Consensus 5 ~~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~l~~~~~ 84 (473)
||||+.--=+ =|---+..|+++|.+.| +|+++.+....+..-... .....+++..++.. ++. ...
T Consensus 1 M~ILltNDDG-i~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~g~ai---t~~~pl~~~~~~~~--------~~~--~~~ 65 (244)
T TIGR00087 1 MKILLTNDDG-IHSPGIRALYQALKELG-EVTVVAPARQRSGTGHSL---TLFEPLRVGQVKVK--------NGA--HIY 65 (244)
T ss_pred CeEEEECCCC-CCCHhHHHHHHHHHhCC-CEEEEeCCCCccccccCc---CCCCCeEEEEeccC--------CCc--cEE
Confidence 4666544322 12233778899999888 899999877655443321 22234555544310 000 000
Q ss_pred cCCCCChhhHHHHHHHHhhhhhHHHHHHHhCCCcEEEEcC----------C---cchHHHHHHHcCCCeEEEec
Q 036520 85 ATVDIPSENIQYLKIAYDLLQHPFKQFVAQQSVDWIIVDV----------M---SHWAGKIAQEYHVPLLLFSA 145 (473)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~----------~---~~~~~~~A~~lgiP~v~~~~ 145 (473)
.....+.+.. .-.+..++ ..+||+||+-. + +.+|+.-|..+|||.+.++.
T Consensus 66 ~v~GTPaDcv----------~~gl~~l~-~~~pDLVvSGiN~G~N~g~~v~ySGTVgAA~ea~~~GipaiA~S~ 128 (244)
T TIGR00087 66 AVDGTPTDCV----------ILGINELM-PEVPDLVISGINAGENLGTDVTYSGTVGAAMEAAIHGVPAIAISL 128 (244)
T ss_pred EEcCcHHHHH----------HHHHHHhc-cCCCCeEEeccccCCCCCccEecchhHHHHHHHHHcCCCeEEEEe
Confidence 1112222111 11222233 34699999753 1 23455557789999999865
No 168
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=84.14 E-value=23 Score=32.59 Aligned_cols=40 Identities=10% Similarity=0.088 Sum_probs=26.8
Q ss_pred cEEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCCcccc
Q 036520 5 LHVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPKNIQR 46 (473)
Q Consensus 5 ~~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~ 46 (473)
||||+.--=+. |---+..|+++|...| +|+++.+....+-
T Consensus 1 M~ILlTNDDGi-~apGi~aL~~al~~~g-~V~VvAP~~eqSg 40 (266)
T PRK13934 1 MKILVTNDDGV-HSPGLRLLYEFVSPLG-EVDVVAPETPKSA 40 (266)
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhCC-cEEEEccCCCCcc
Confidence 56666554333 3345788899998877 7998887665543
No 169
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=83.61 E-value=10 Score=35.57 Aligned_cols=134 Identities=16% Similarity=0.193 Sum_probs=75.2
Q ss_pred EEEEeecCcccCCHHHHHHHHHHHhc-CC--CCEEEEEcCCCCCCCccccCchhhhhhcCCCceEE-ecccc---hHHHh
Q 036520 285 VVFVGFGSECKLSKDQVYEIAYGLEL-SG--LPFLWALRKPEWATDDVDALPLGFADTIRGKGIVS-IGWAP---QLEIL 357 (473)
Q Consensus 285 ~V~vs~Gs~~~~~~~~~~~~~~al~~-~~--~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~-~~~~p---q~~ll 357 (473)
.+-|=.|.++. +.....++++++.+ .+ .++++.++-+....+.....-..-.+....+++.+ ..++| ...+|
T Consensus 146 ~~tIlvGNSgd-~SN~Hie~L~~l~~~~~~~v~ii~PlsYp~gn~~Yi~~V~~~~~~lF~~~~~~~L~e~l~f~eYl~lL 224 (322)
T PRK02797 146 KMTILVGNSGD-RSNRHIEALRALHQQFGDNVKIIVPMGYPANNQAYIEEVRQAGLALFGAENFQILTEKLPFDDYLALL 224 (322)
T ss_pred ceEEEEeCCCC-CcccHHHHHHHHHHHhCCCeEEEEECCcCCCCHHHHHHHHHHHHHhcCcccEEehhhhCCHHHHHHHH
Confidence 34444466653 34444555666633 34 46666665432210001111111111222346664 45666 48899
Q ss_pred hCCCcceeeec--cCchhHHHHHhhCCceecccc-ccccccceeeeeecceEEEEecCCCCCcCHHHHHHHHH
Q 036520 358 AHPSIGTSLFH--AGWGSVIETLQFGHSLVVLPL-IIDQPLNARLLVDKDLAVQVERKDDGSFTRDGIAKALR 427 (473)
Q Consensus 358 ~~~~~~~~ItH--GG~~s~~eal~~GvP~l~~P~-~~DQ~~na~~v~~~G~G~~l~~~~~~~~t~~~l~~~i~ 427 (473)
+.|+++.|+|+ =|.||++-.++.|+|+++--- ..=|..+. .|+-+-.+.+ .++...+.++=+
T Consensus 225 ~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r~n~fwqdl~e-----~gv~Vlf~~d---~L~~~~v~e~~r 289 (322)
T PRK02797 225 RQCDLGYFIFARQQGIGTLCLLIQLGKPVVLSRDNPFWQDLTE-----QGLPVLFTGD---DLDEDIVREAQR 289 (322)
T ss_pred HhCCEEEEeechhhHHhHHHHHHHCCCcEEEecCCchHHHHHh-----CCCeEEecCC---cccHHHHHHHHH
Confidence 99999988886 489999999999999987632 12233333 3666555554 677666665533
No 170
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=83.42 E-value=7.3 Score=37.09 Aligned_cols=139 Identities=13% Similarity=0.099 Sum_probs=81.7
Q ss_pred EEEEeecCcccCCHHHHHHHHHHHhc---CCCCEEEEEcCCCCCCCccccCchhhhhhcCCCceEE-ecccch---HHHh
Q 036520 285 VVFVGFGSECKLSKDQVYEIAYGLEL---SGLPFLWALRKPEWATDDVDALPLGFADTIRGKGIVS-IGWAPQ---LEIL 357 (473)
Q Consensus 285 ~V~vs~Gs~~~~~~~~~~~~~~al~~---~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~-~~~~pq---~~ll 357 (473)
.+.|=.|.++..+. ...++++++.+ .+.++++-++-+....+....+-..-.+....+|+.+ .+++|. ..+|
T Consensus 185 ~ltILvGNSgd~sN-nHieaL~~L~~~~~~~~kIivPLsYg~~n~~Yi~~V~~~~~~lF~~~~~~iL~e~mpf~eYl~lL 263 (360)
T PF07429_consen 185 KLTILVGNSGDPSN-NHIEALEALKQQFGDDVKIIVPLSYGANNQAYIQQVIQAGKELFGAENFQILTEFMPFDEYLALL 263 (360)
T ss_pred ceEEEEcCCCCCCc-cHHHHHHHHHHhcCCCeEEEEECCCCCchHHHHHHHHHHHHHhcCccceeEhhhhCCHHHHHHHH
Confidence 44455576664333 33334445543 3456777666542110001111111122234457764 468875 7899
Q ss_pred hCCCcceeeec--cCchhHHHHHhhCCceeccccccccccceeeeeecceEEEEecCCCCCcCHHHHHHHHHHHhc
Q 036520 358 AHPSIGTSLFH--AGWGSVIETLQFGHSLVVLPLIIDQPLNARLLVDKDLAVQVERKDDGSFTRDGIAKALRLATV 431 (473)
Q Consensus 358 ~~~~~~~~ItH--GG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~t~~~l~~~i~~ll~ 431 (473)
..|+++.|.+. =|.|+++-.|+.|+|++.--- -.--+-+.+.|+=+....+ .++...|.++=+.+..
T Consensus 264 ~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~~~----np~~~~l~~~~ipVlf~~d---~L~~~~v~ea~rql~~ 332 (360)
T PF07429_consen 264 SRCDLGIFNHNRQQGIGNICLLLQLGKKVFLSRD----NPFWQDLKEQGIPVLFYGD---ELDEALVREAQRQLAN 332 (360)
T ss_pred HhCCEEEEeechhhhHhHHHHHHHcCCeEEEecC----ChHHHHHHhCCCeEEeccc---cCCHHHHHHHHHHHhh
Confidence 99999888875 589999999999999987531 1122224444666555544 8888888888777765
No 171
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=83.01 E-value=16 Score=33.63 Aligned_cols=98 Identities=10% Similarity=0.028 Sum_probs=51.8
Q ss_pred HHHHHHHHHhC---CCeEEEEeCCCccccCCCCCCCcccCCCeEEEEecCCccccccccCCCCCCCccCCCCChhhHHHH
Q 036520 21 FFQLSIALAKS---GVKVSFISTPKNIQRLPKPAPESEVAALINFVEFPLPASAALDDKLLLPEGAEATVDIPSENIQYL 97 (473)
Q Consensus 21 ~l~la~~L~~~---Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 97 (473)
+..|++.|... |++|+++.+....+-.-... .....+++..+. ++ .......|.+..
T Consensus 16 l~aL~~~l~~~~~~~~~V~VVAP~~eqSg~ghai---T~~~pl~~~~~~----------~~----~yav~GTPaDCV--- 75 (261)
T PRK13931 16 LEVLEQIATELAGPDGEVWTVAPAFEQSGVGHCI---SYTHPMMIAELG----------PR----RFAAEGSPADCV--- 75 (261)
T ss_pred HHHHHHHHHHhccCCCeEEEEeCCCCCCCCcccc---cCCCCeEEEEeC----------CC----eEEEcCchHHHH---
Confidence 55666766653 47999998776554332211 222345555442 11 111122332211
Q ss_pred HHHHhhhhhHHHHHHHhCCCcEEEEcC----------Cc---chHHHHHHHcCCCeEEEec
Q 036520 98 KIAYDLLQHPFKQFVAQQSVDWIIVDV----------MS---HWAGKIAQEYHVPLLLFSA 145 (473)
Q Consensus 98 ~~~~~~~~~~l~~ll~~~~pD~vI~D~----------~~---~~~~~~A~~lgiP~v~~~~ 145 (473)
.-.+..++...+||+||+-. +. .+|+.-|..+|||.+.++.
T Consensus 76 -------~lal~~~~~~~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~ 129 (261)
T PRK13931 76 -------LAALYDVMKDAPPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIALSQ 129 (261)
T ss_pred -------HHHHHHhcCCCCCCEEEECCccCCCCCcCcccchhHHHHHHHHhcCCCeEEEEe
Confidence 11233344335799999753 22 2444556789999999865
No 172
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=82.59 E-value=11 Score=31.83 Aligned_cols=55 Identities=15% Similarity=0.213 Sum_probs=41.9
Q ss_pred ccEEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCcccCCCeEEEEec
Q 036520 4 KLHVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPKNIQRLPKPAPESEVAALINFVEFP 66 (473)
Q Consensus 4 ~~~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~ 66 (473)
.|+|++.-.|+.|-..-.+.++..|.+.|++|-=+.++...+--.. -+++.+++.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR--------~GF~Ivdl~ 59 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKR--------IGFKIVDLA 59 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeE--------eeeEEEEcc
Confidence 4799999999999999999999999999999984444544332222 267777665
No 173
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=82.35 E-value=4.3 Score=40.58 Aligned_cols=38 Identities=26% Similarity=0.306 Sum_probs=29.6
Q ss_pred CCCccEEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCCc
Q 036520 1 MARKLHVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPKN 43 (473)
Q Consensus 1 m~~~~~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~ 43 (473)
|.+.||||++-.+++-| +|++.|.+.++-..+++.+.+
T Consensus 1 ~~~~~kvLviG~g~reh-----al~~~~~~~~~~~~~~~~pgn 38 (426)
T PRK13789 1 MQVKLKVLLIGSGGRES-----AIAFALRKSNLLSELKVFPGN 38 (426)
T ss_pred CCCCcEEEEECCCHHHH-----HHHHHHHhCCCCCEEEEECCc
Confidence 88899999999888776 689999998865555554443
No 174
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=82.08 E-value=9.2 Score=41.59 Aligned_cols=103 Identities=15% Similarity=0.111 Sum_probs=63.7
Q ss_pred ccch---HHHhhCCCcceeee---ccCch-hHHHHHhhCCc---eeccccccccccceeeeeecc-eEEEEecCCCCCcC
Q 036520 350 WAPQ---LEILAHPSIGTSLF---HAGWG-SVIETLQFGHS---LVVLPLIIDQPLNARLLVDKD-LAVQVERKDDGSFT 418 (473)
Q Consensus 350 ~~pq---~~ll~~~~~~~~It---HGG~~-s~~eal~~GvP---~l~~P~~~DQ~~na~~v~~~G-~G~~l~~~~~~~~t 418 (473)
++|. .+++..+++ ||. .-|+| +..|++++|+| +++++-++ ..+.. +| -|+.+.+. +
T Consensus 363 ~v~~~el~aly~~ADv--fvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~---G~~~~---l~~~allVnP~-----D 429 (797)
T PLN03063 363 SVDFNYLCALYAITDV--MLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFA---GAGQS---LGAGALLVNPW-----N 429 (797)
T ss_pred CCCHHHHHHHHHhCCE--EEeCccccccCcchhhHheeecCCCCCEEeeCCc---Cchhh---hcCCeEEECCC-----C
Confidence 4554 567788888 664 34775 77899999999 44444321 22221 23 46677654 8
Q ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHH
Q 036520 419 RDGIAKALRLATVSEEGEKLRVRAREAANTFNDKKLHDDYSVRFVEYLK 467 (473)
Q Consensus 419 ~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (473)
.++++++|.++|+-. .++-+++.+++.+..... ....-++.+++.+.
T Consensus 430 ~~~lA~AI~~aL~m~-~~er~~r~~~~~~~v~~~-~~~~Wa~~fl~~l~ 476 (797)
T PLN03063 430 ITEVSSAIKEALNMS-DEERETRHRHNFQYVKTH-SAQKWADDFMSELN 476 (797)
T ss_pred HHHHHHHHHHHHhCC-HHHHHHHHHHHHHhhhhC-CHHHHHHHHHHHHH
Confidence 899999999999821 345566666677666543 33444455544443
No 175
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=81.83 E-value=1.4 Score=35.82 Aligned_cols=44 Identities=11% Similarity=0.106 Sum_probs=35.3
Q ss_pred cEEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCCccccCCC
Q 036520 5 LHVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPKNIQRLPK 49 (473)
Q Consensus 5 ~~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~ 49 (473)
|||++...|+.+=+. ...+.++|.++|++|.++.++...+.+..
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~A~~~~~~ 44 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSPSAERFVTP 44 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESHHHHHHSHH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECCcHHHHhhh
Confidence 578888887766666 99999999999999999998887666544
No 176
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=81.39 E-value=3.2 Score=37.95 Aligned_cols=40 Identities=23% Similarity=0.355 Sum_probs=28.9
Q ss_pred hHHHHHHHhCCCcEEEEc--CC----cchHHHHHHHcCCCeEEEec
Q 036520 106 HPFKQFVAQQSVDWIIVD--VM----SHWAGKIAQEYHVPLLLFSA 145 (473)
Q Consensus 106 ~~l~~ll~~~~pD~vI~D--~~----~~~~~~~A~~lgiP~v~~~~ 145 (473)
+.+.+++++.++|+||== +| +--+..+|+.+|||++.+-.
T Consensus 56 ~~l~~~l~~~~i~~vIDATHPfA~~is~na~~a~~~~~ipylR~eR 101 (249)
T PF02571_consen 56 EGLAEFLRENGIDAVIDATHPFAAEISQNAIEACRELGIPYLRFER 101 (249)
T ss_pred HHHHHHHHhCCCcEEEECCCchHHHHHHHHHHHHhhcCcceEEEEc
Confidence 356788899999998822 22 22445789999999999844
No 177
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=80.65 E-value=4.9 Score=41.29 Aligned_cols=76 Identities=9% Similarity=0.050 Sum_probs=46.7
Q ss_pred hHHHhhCCCcceeee---ccCc-hhHHHHHhhCCceecccccc-ccccceeeeeec-ceEEEEecCCCC--CcCHHHHHH
Q 036520 353 QLEILAHPSIGTSLF---HAGW-GSVIETLQFGHSLVVLPLII-DQPLNARLLVDK-DLAVQVERKDDG--SFTRDGIAK 424 (473)
Q Consensus 353 q~~ll~~~~~~~~It---HGG~-~s~~eal~~GvP~l~~P~~~-DQ~~na~~v~~~-G~G~~l~~~~~~--~~t~~~l~~ 424 (473)
..+++..|++ +|. +=|+ -++.||+++|+|+|+....+ ..... ..+... ..|+.+...++. ..+.++|++
T Consensus 468 y~E~~~g~dl--~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v~-E~v~~~~~~gi~V~~r~~~~~~e~v~~La~ 544 (590)
T cd03793 468 YEEFVRGCHL--GVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFME-EHIEDPESYGIYIVDRRFKSPDESVQQLTQ 544 (590)
T ss_pred hHHHhhhceE--EEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhhH-HHhccCCCceEEEecCCccchHHHHHHHHH
Confidence 5677888888 555 4555 48999999999999987632 11111 011111 246666533111 235678888
Q ss_pred HHHHHhc
Q 036520 425 ALRLATV 431 (473)
Q Consensus 425 ~i~~ll~ 431 (473)
++.+++.
T Consensus 545 ~m~~~~~ 551 (590)
T cd03793 545 YMYEFCQ 551 (590)
T ss_pred HHHHHhC
Confidence 8888886
No 178
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=77.57 E-value=4.9 Score=33.00 Aligned_cols=41 Identities=24% Similarity=0.144 Sum_probs=36.7
Q ss_pred CccEEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCCc
Q 036520 3 RKLHVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPKN 43 (473)
Q Consensus 3 ~~~~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~ 43 (473)
++.+|++.+.++-+|-.-..-++..|..+|++|+++.....
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp 42 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTS 42 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCC
Confidence 45699999999999999999999999999999999986543
No 179
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=76.97 E-value=3.6 Score=35.98 Aligned_cols=45 Identities=9% Similarity=-0.068 Sum_probs=34.6
Q ss_pred CCccEEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCCcccc
Q 036520 2 ARKLHVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPKNIQR 46 (473)
Q Consensus 2 ~~~~~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~ 46 (473)
-+.+||++.-.|+.|=+.-...++++|.++||+|.++.++...+.
T Consensus 3 l~~k~IllgVTGsiaa~k~a~~lir~L~k~G~~V~vv~T~aA~~~ 47 (196)
T PRK08305 3 LKGKRIGFGLTGSHCTYDEVMPEIEKLVDEGAEVTPIVSYTVQTT 47 (196)
T ss_pred CCCCEEEEEEcCHHHHHHHHHHHHHHHHhCcCEEEEEECHhHHHH
Confidence 455688887776555444479999999999999999998776544
No 180
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=76.96 E-value=7.4 Score=33.20 Aligned_cols=43 Identities=12% Similarity=0.148 Sum_probs=29.3
Q ss_pred hhhhHHHHHHHhCCCcEEEEcCCcchHH--H-H--HHHc-CCCeEEEec
Q 036520 103 LLQHPFKQFVAQQSVDWIIVDVMSHWAG--K-I--AQEY-HVPLLLFSA 145 (473)
Q Consensus 103 ~~~~~l~~ll~~~~pD~vI~D~~~~~~~--~-~--A~~l-giP~v~~~~ 145 (473)
...+.+.++|++.+||+||+.......+ . + ...+ ++|.+++.+
T Consensus 76 ~~~~~l~~~l~~~~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvT 124 (169)
T PF06925_consen 76 LFARRLIRLLREFQPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVT 124 (169)
T ss_pred HHHHHHHHHHhhcCCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEc
Confidence 3566889999999999999996543333 1 1 2234 578777655
No 181
>PRK09620 hypothetical protein; Provisional
Probab=76.78 E-value=32 Score=31.09 Aligned_cols=38 Identities=11% Similarity=0.052 Sum_probs=28.5
Q ss_pred ccEEEEecCCCccChHH------------HHHHHHHHHhCCCeEEEEeCC
Q 036520 4 KLHVVMLPWSAFGHLMP------------FFQLSIALAKSGVKVSFISTP 41 (473)
Q Consensus 4 ~~~vl~~~~~~~gH~~p------------~l~la~~L~~~Gh~Vt~~~~~ 41 (473)
.++|++...|+.=.+.| -..||++|.++|++|+++...
T Consensus 3 gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 3 GKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred CCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 35788877776544433 368899999999999999754
No 182
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=75.87 E-value=3.2 Score=35.54 Aligned_cols=35 Identities=14% Similarity=0.098 Sum_probs=24.6
Q ss_pred cEEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCCc
Q 036520 5 LHVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPKN 43 (473)
Q Consensus 5 ~~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~ 43 (473)
|||.++.-.+. +- -.|.++...|||+||.++-...
T Consensus 1 mKIaiIgAsG~--~G--s~i~~EA~~RGHeVTAivRn~~ 35 (211)
T COG2910 1 MKIAIIGASGK--AG--SRILKEALKRGHEVTAIVRNAS 35 (211)
T ss_pred CeEEEEecCch--hH--HHHHHHHHhCCCeeEEEEeChH
Confidence 67877654433 32 2578999999999998885543
No 183
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=75.38 E-value=12 Score=34.66 Aligned_cols=79 Identities=10% Similarity=-0.012 Sum_probs=47.7
Q ss_pred HHHHHhc-CCCCEEEEEcCCCCCCCccccCchhhhhhcCCCceE-EecccchHHHhhCCCcceeeeccCchhHHHHHhhC
Q 036520 304 IAYGLEL-SGLPFLWALRKPEWATDDVDALPLGFADTIRGKGIV-SIGWAPQLEILAHPSIGTSLFHAGWGSVIETLQFG 381 (473)
Q Consensus 304 ~~~al~~-~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~-~~~~~pq~~ll~~~~~~~~ItHGG~~s~~eal~~G 381 (473)
+...++. ++..++++....... ..-...+.+....+++. +.+-++-.+|+.+++. +||-.+ ++-.||+.+|
T Consensus 146 l~~~~~~~p~~~lvvK~HP~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~s~~--VvtinS-tvGlEAll~g 218 (269)
T PF05159_consen 146 LESFAKENPDAKLVVKPHPDERG----GNKYSYLEELPNLPNVVIIDDDVNLYELLEQSDA--VVTINS-TVGLEALLHG 218 (269)
T ss_pred HHHHHHHCCCCEEEEEECchhhC----CCChhHhhhhhcCCCeEEECCCCCHHHHHHhCCE--EEEECC-HHHHHHHHcC
Confidence 3333333 367777776653211 00001122222223433 4466788999999998 888764 4789999999
Q ss_pred Cceecccc
Q 036520 382 HSLVVLPL 389 (473)
Q Consensus 382 vP~l~~P~ 389 (473)
+|++++..
T Consensus 219 kpVi~~G~ 226 (269)
T PF05159_consen 219 KPVIVFGR 226 (269)
T ss_pred CceEEecC
Confidence 99999763
No 184
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=75.28 E-value=10 Score=29.78 Aligned_cols=84 Identities=15% Similarity=0.124 Sum_probs=53.9
Q ss_pred ChHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCcccCCCeEEEEecCCccccccccCCCCCCCccCCCCChhhHHH
Q 036520 17 HLMPFFQLSIALAKSGVKVSFISTPKNIQRLPKPAPESEVAALINFVEFPLPASAALDDKLLLPEGAEATVDIPSENIQY 96 (473)
Q Consensus 17 H~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 96 (473)
+=.-++.+|+.|...|+++ ++| +.....+... ++.+..+. . ...+
T Consensus 10 ~K~~~~~~a~~l~~~G~~i-~AT-~gTa~~L~~~--------Gi~~~~v~----------~-~~~~-------------- 54 (112)
T cd00532 10 VKAMLVDLAPKLSSDGFPL-FAT-GGTSRVLADA--------GIPVRAVS----------K-RHED-------------- 54 (112)
T ss_pred cHHHHHHHHHHHHHCCCEE-EEC-cHHHHHHHHc--------CCceEEEE----------e-cCCC--------------
Confidence 3456889999999999987 344 4555555443 66666553 1 1100
Q ss_pred HHHHHhhhhhHHHHHHHh-CCCcEEEEcC--Cc--------chHHHHHHHcCCCeEE
Q 036520 97 LKIAYDLLQHPFKQFVAQ-QSVDWIIVDV--MS--------HWAGKIAQEYHVPLLL 142 (473)
Q Consensus 97 ~~~~~~~~~~~l~~ll~~-~~pD~vI~D~--~~--------~~~~~~A~~lgiP~v~ 142 (473)
..+.+.+++++ .++|+||.-. .. +.-..+|-..+||+++
T Consensus 55 -------g~~~i~~~i~~~g~idlVIn~~~~~~~~~~~~dg~~iRR~A~~~~Ip~~T 104 (112)
T cd00532 55 -------GEPTVDAAIAEKGKFDVVINLRDPRRDRCTDEDGTALLRLARLYKIPVTT 104 (112)
T ss_pred -------CCcHHHHHHhCCCCEEEEEEcCCCCcccccCCChHHHHHHHHHcCCCEEE
Confidence 23456788888 8999999732 21 2223568899999986
No 185
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=74.89 E-value=6.2 Score=39.60 Aligned_cols=62 Identities=18% Similarity=0.155 Sum_probs=48.0
Q ss_pred hHHHHHhhCCceeccccccccccceeeeeecceEEEEecCCCCCcCHHHHHHHHHHHhcCcchHHHHHHHHH
Q 036520 373 SVIETLQFGHSLVVLPLIIDQPLNARLLVDKDLAVQVERKDDGSFTRDGIAKALRLATVSEEGEKLRVRARE 444 (473)
Q Consensus 373 s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~a~~ 444 (473)
++.||+++|+|+|+. ++-.-+..++..--|.-.++. .-....+++++.++.. |++++.++.+
T Consensus 381 v~IEAMa~glPvvAt----~~GGP~EiV~~~~tG~l~dp~---~e~~~~~a~~~~kl~~---~p~l~~~~~~ 442 (495)
T KOG0853|consen 381 VPIEAMACGLPVVAT----NNGGPAEIVVHGVTGLLIDPG---QEAVAELADALLKLRR---DPELWARMGK 442 (495)
T ss_pred eeHHHHhcCCCEEEe----cCCCceEEEEcCCcceeeCCc---hHHHHHHHHHHHHHhc---CHHHHHHHHH
Confidence 789999999999875 455566677766678777763 4444589999999999 8998877654
No 186
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=74.31 E-value=61 Score=28.56 Aligned_cols=146 Identities=15% Similarity=0.021 Sum_probs=82.0
Q ss_pred CcEEEEeecCcccCCHHHHHHHHHHHhcCCCCEEEEEcCCCCCCCccccCchhhhhhcCCCceEEecccchHHHhhCCCc
Q 036520 283 RSVVFVGFGSECKLSKDQVYEIAYGLELSGLPFLWALRKPEWATDDVDALPLGFADTIRGKGIVSIGWAPQLEILAHPSI 362 (473)
Q Consensus 283 ~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~ll~~~~~ 362 (473)
+.++.|+.|.++ ...++.|.+.|..+.++-+. ..+.+.+......+.......+...+..+++
T Consensus 11 k~vLVIGgG~va-------~~ka~~Ll~~ga~V~VIs~~----------~~~~l~~l~~~~~i~~~~~~~~~~~l~~adl 73 (202)
T PRK06718 11 KRVVIVGGGKVA-------GRRAITLLKYGAHIVVISPE----------LTENLVKLVEEGKIRWKQKEFEPSDIVDAFL 73 (202)
T ss_pred CEEEEECCCHHH-------HHHHHHHHHCCCeEEEEcCC----------CCHHHHHHHhCCCEEEEecCCChhhcCCceE
Confidence 458888888766 44555666677776665321 1112222222234444444444556667776
Q ss_pred ceeeeccCchhHHHHHh----hCCceecccccccccc-----ceeeeeecceEEEEecCCCCCcCHHHHHHHHHHHhcCc
Q 036520 363 GTSLFHAGWGSVIETLQ----FGHSLVVLPLIIDQPL-----NARLLVDKDLAVQVERKDDGSFTRDGIAKALRLATVSE 433 (473)
Q Consensus 363 ~~~ItHGG~~s~~eal~----~GvP~l~~P~~~DQ~~-----na~~v~~~G~G~~l~~~~~~~~t~~~l~~~i~~ll~~~ 433 (473)
+|.--+.-.+.+.++ .++++-+ .|.+. .-..+.+-++-+.+...+..-.-+..|++.|.+++. +
T Consensus 74 --ViaaT~d~elN~~i~~~a~~~~lvn~----~d~~~~~~f~~Pa~~~~g~l~iaIsT~G~sP~la~~lr~~ie~~~~-~ 146 (202)
T PRK06718 74 --VIAATNDPRVNEQVKEDLPENALFNV----ITDAESGNVVFPSALHRGKLTISVSTDGASPKLAKKIRDELEALYD-E 146 (202)
T ss_pred --EEEcCCCHHHHHHHHHHHHhCCcEEE----CCCCccCeEEEeeEEEcCCeEEEEECCCCChHHHHHHHHHHHHHcc-h
Confidence 888777766666655 4454433 34433 333444446666666542112334567778877764 1
Q ss_pred chHHHHHHHHHHHHHhccC
Q 036520 434 EGEKLRVRAREAANTFNDK 452 (473)
Q Consensus 434 ~~~~~~~~a~~~~~~~~~~ 452 (473)
+-..+-+.+.++++.+++.
T Consensus 147 ~~~~~~~~~~~~R~~~k~~ 165 (202)
T PRK06718 147 SYESYIDFLYECRQKIKEL 165 (202)
T ss_pred hHHHHHHHHHHHHHHHHHh
Confidence 2456777888888877653
No 187
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=72.57 E-value=14 Score=33.60 Aligned_cols=99 Identities=12% Similarity=0.112 Sum_probs=53.6
Q ss_pred CCcEEEEeecCccc---CCHHHHHHHHHHHhcCCCCEEEEEcCCCCCCCccccCchhhhhhcCCCceEEecc--cch-HH
Q 036520 282 PRSVVFVGFGSECK---LSKDQVYEIAYGLELSGLPFLWALRKPEWATDDVDALPLGFADTIRGKGIVSIGW--APQ-LE 355 (473)
Q Consensus 282 ~~~~V~vs~Gs~~~---~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~--~pq-~~ 355 (473)
+++.|.+..|+... .+.+.+.++++.+.+.++++++..+..+.. ...-+...+......+.+.+- +.+ ..
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~e~~a 179 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQE----KEIADQIAAGLQNPVINLAGKTSLRELAA 179 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHHH----HHHHHHHHTTHTTTTEEETTTS-HHHHHH
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHHH----HHHHHHHHHhcccceEeecCCCCHHHHHH
Confidence 34578888887654 677889999999988876655544332100 000001111111113333332 233 78
Q ss_pred HhhCCCcceeeeccCchhHHHHHhhCCceecc
Q 036520 356 ILAHPSIGTSLFHAGWGSVIETLQFGHSLVVL 387 (473)
Q Consensus 356 ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~ 387 (473)
++.++++ +|+.- .|.++=|.+.|+|+|++
T Consensus 180 li~~a~~--~I~~D-tg~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 180 LISRADL--VIGND-TGPMHLAAALGTPTVAL 208 (247)
T ss_dssp HHHTSSE--EEEES-SHHHHHHHHTT--EEEE
T ss_pred HHhcCCE--EEecC-ChHHHHHHHHhCCEEEE
Confidence 8889998 88874 57788999999999988
No 188
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=72.12 E-value=34 Score=28.90 Aligned_cols=100 Identities=14% Similarity=-0.028 Sum_probs=57.7
Q ss_pred EEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCC--cccCCCeEEEEecCCccccccccCCCCCCC
Q 036520 6 HVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPKNIQRLPKPAPE--SEVAALINFVEFPLPASAALDDKLLLPEGA 83 (473)
Q Consensus 6 ~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~--~~~~~~i~~~~i~~~~~~~~~~~~~l~~~~ 83 (473)
-|.+.+..+.|=....+.+|-+.+.+|++|.|+..-... ...+.. -..-+++.+.... .+.....
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~---~~~gE~~~l~~l~~v~~~~~g----------~~~~~~~ 70 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGG---WKYGELKALERLPNIEIHRMG----------RGFFWTT 70 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCC---CccCHHHHHHhCCCcEEEECC----------CCCccCC
Confidence 366778889999999999999999999999995421110 001100 0011467777665 2211110
Q ss_pred ccCCCCChhhHHHHHHHHhhhhhHHHHHHHhCCCcEEEEcCCc
Q 036520 84 EATVDIPSENIQYLKIAYDLLQHPFKQFVAQQSVDWIIVDVMS 126 (473)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~ 126 (473)
.... --....+...+...+.+++.++|+||-|-+.
T Consensus 71 ----~~~~----~~~~~a~~~~~~a~~~~~~~~~dLlVLDEi~ 105 (159)
T cd00561 71 ----ENDE----EDIAAAAEGWAFAKEAIASGEYDLVILDEIN 105 (159)
T ss_pred ----CChH----HHHHHHHHHHHHHHHHHhcCCCCEEEEechH
Confidence 1111 1112233345556677778899999999654
No 189
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=71.84 E-value=4.7 Score=39.44 Aligned_cols=98 Identities=10% Similarity=0.171 Sum_probs=59.9
Q ss_pred CceEEe-cccchHHHhhCCCcceeeeccCchhHHHHHhhCCceeccccccccccceeeeeecceEEEEecCCCC--CcCH
Q 036520 343 KGIVSI-GWAPQLEILAHPSIGTSLFHAGWGSVIETLQFGHSLVVLPLIIDQPLNARLLVDKDLAVQVERKDDG--SFTR 419 (473)
Q Consensus 343 ~nv~~~-~~~pq~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~--~~t~ 419 (473)
.++... ...+-.++|..+++ +||-- .+.+.|.++.++|+|....-.|++...+ |+-......-.| .-+.
T Consensus 252 ~~i~~~~~~~~~~~ll~~aDi--LITDy-SSi~fD~~~l~KPiify~~D~~~Y~~~r-----g~~~~~~~~~pg~~~~~~ 323 (369)
T PF04464_consen 252 SNIIFVSDNEDIYDLLAAADI--LITDY-SSIIFDFLLLNKPIIFYQPDLEEYEKER-----GFYFDYEEDLPGPIVYNF 323 (369)
T ss_dssp TTEEE-TT-S-HHHHHHT-SE--EEESS--THHHHHGGGT--EEEE-TTTTTTTTTS-----SBSS-TTTSSSS-EESSH
T ss_pred CcEEECCCCCCHHHHHHhcCE--EEEec-hhHHHHHHHhCCCEEEEeccHHHHhhcc-----CCCCchHhhCCCceeCCH
Confidence 466654 34457899999999 99997 4588999999999998877666664332 222221110001 2478
Q ss_pred HHHHHHHHHHhcCcchHHHHHHHHHHHHHhc
Q 036520 420 DGIAKALRLATVSEEGEKLRVRAREAANTFN 450 (473)
Q Consensus 420 ~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~ 450 (473)
++|.++|..++++ +..++++-++..+.+.
T Consensus 324 ~eL~~~i~~~~~~--~~~~~~~~~~~~~~~~ 352 (369)
T PF04464_consen 324 EELIEAIENIIEN--PDEYKEKREKFRDKFF 352 (369)
T ss_dssp HHHHHHHTTHHHH--HHHTHHHHHHHHHHHS
T ss_pred HHHHHHHHhhhhC--CHHHHHHHHHHHHHhC
Confidence 9999999999982 2345666677777764
No 190
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=71.48 E-value=43 Score=28.70 Aligned_cols=100 Identities=12% Similarity=0.091 Sum_probs=57.0
Q ss_pred EEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCcc-cCCCeEEEEecCCccccccccCCCCCCCc
Q 036520 6 HVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPKNIQRLPKPAPESE-VAALINFVEFPLPASAALDDKLLLPEGAE 84 (473)
Q Consensus 6 ~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~-~~~~i~~~~i~~~~~~~~~~~~~l~~~~~ 84 (473)
-|.++...+.|=..-.+.+|-+.+.+|+.|.++..-... ...+.... ..-++.+.... .++....
T Consensus 7 li~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~---~~~GE~~~l~~~~~~~~~~g----------~g~~~~~- 72 (173)
T TIGR00708 7 IIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGA---WPNGERAAFEPHGVEFQVMG----------TGFTWET- 72 (173)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCC---cccChHHHHHhcCcEEEECC----------CCCeecC-
Confidence 467777889999999999999999999999766321110 00000000 00156666554 3322111
Q ss_pred cCCCCChhhHHHHHHHHhhhhhHHHHHHHhCCCcEEEEcCCc
Q 036520 85 ATVDIPSENIQYLKIAYDLLQHPFKQFVAQQSVDWIIVDVMS 126 (473)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~ 126 (473)
..... -............+.+.+.++|+||-|-..
T Consensus 73 ---~~~~~----~~~~~~~~~~~a~~~l~~~~~DlvVLDEi~ 107 (173)
T TIGR00708 73 ---QNREA----DTAIAKAAWQHAKEMLADPELDLVLLDELT 107 (173)
T ss_pred ---CCcHH----HHHHHHHHHHHHHHHHhcCCCCEEEehhhH
Confidence 11111 112233445556677778899999999644
No 191
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=70.82 E-value=20 Score=33.72 Aligned_cols=54 Identities=15% Similarity=0.184 Sum_probs=38.0
Q ss_pred hCCCcceeeeccCchhHHHHHhh----CCceeccccccccccceeeeeecceEEEEecCCCCCcCHHHHHHHHHHHhcC
Q 036520 358 AHPSIGTSLFHAGWGSVIETLQF----GHSLVVLPLIIDQPLNARLLVDKDLAVQVERKDDGSFTRDGIAKALRLATVS 432 (473)
Q Consensus 358 ~~~~~~~~ItHGG~~s~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~t~~~l~~~i~~ll~~ 432 (473)
..+++ +|+-||-||+++++.. ++|++.+-.. .+|... .++.+++.++|.++++|
T Consensus 62 ~~~d~--vi~~GGDGt~l~~~~~~~~~~~pilGIn~G-------------~lGFL~------~~~~~~~~~~l~~~~~g 119 (291)
T PRK02155 62 ARADL--AVVLGGDGTMLGIGRQLAPYGVPLIGINHG-------------RLGFIT------DIPLDDMQETLPPMLAG 119 (291)
T ss_pred cCCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEcCC-------------Cccccc------cCCHHHHHHHHHHHHcC
Confidence 34555 9999999999999774 5676665421 123222 35778999999999884
No 192
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=70.51 E-value=6.6 Score=31.19 Aligned_cols=36 Identities=22% Similarity=0.180 Sum_probs=32.4
Q ss_pred EEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 036520 6 HVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTP 41 (473)
Q Consensus 6 ~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 41 (473)
||++.+.++-.|...+.-++..|.++|++|.++...
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~ 36 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVD 36 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCC
Confidence 489999999999999999999999999999887643
No 193
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=70.38 E-value=25 Score=29.28 Aligned_cols=138 Identities=15% Similarity=0.146 Sum_probs=71.3
Q ss_pred EEEEeecCcccCCHHHHHHHHHHHhcCCCCEEEEEcCCCCCCCccccCchhhhhhcCCCceEEecccchHHHhhCCCcce
Q 036520 285 VVFVGFGSECKLSKDQVYEIAYGLELSGLPFLWALRKPEWATDDVDALPLGFADTIRGKGIVSIGWAPQLEILAHPSIGT 364 (473)
Q Consensus 285 ~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~ 364 (473)
.|.|-+||.. +....+++...|++.|..+-+.+-+.. ..|+.+.+. + .-+.+-.+++
T Consensus 2 ~V~Ii~gs~S--D~~~~~~a~~~L~~~gi~~~~~V~saH-------R~p~~l~~~-----------~---~~~~~~~~~v 58 (150)
T PF00731_consen 2 KVAIIMGSTS--DLPIAEEAAKTLEEFGIPYEVRVASAH-------RTPERLLEF-----------V---KEYEARGADV 58 (150)
T ss_dssp EEEEEESSGG--GHHHHHHHHHHHHHTT-EEEEEE--TT-------TSHHHHHHH-----------H---HHTTTTTESE
T ss_pred eEEEEeCCHH--HHHHHHHHHHHHHHcCCCEEEEEEecc-------CCHHHHHHH-----------H---HHhccCCCEE
Confidence 4556677764 778888888888888876655444321 223321111 1 1111122344
Q ss_pred eeeccCch----hHHHHHhhCCceeccccccccccc----eeeeee-cceEEEEecCCCCCcCHHHHHHHHHHHhcCcch
Q 036520 365 SLFHAGWG----SVIETLQFGHSLVVLPLIIDQPLN----ARLLVD-KDLAVQVERKDDGSFTRDGIAKALRLATVSEEG 435 (473)
Q Consensus 365 ~ItHGG~~----s~~eal~~GvP~l~~P~~~DQ~~n----a~~v~~-~G~G~~l~~~~~~~~t~~~l~~~i~~ll~~~~~ 435 (473)
||.=.|.. ++..++ .-.|+|.+|....+... ...++- .|+++..-.-+ +-.++..++..|-.+ . +
T Consensus 59 iIa~AG~~a~Lpgvva~~-t~~PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~i~-~~~nAA~~A~~ILa~-~---d 132 (150)
T PF00731_consen 59 IIAVAGMSAALPGVVASL-TTLPVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVGIN-NGFNAALLAARILAL-K---D 132 (150)
T ss_dssp EEEEEESS--HHHHHHHH-SSS-EEEEEE-STTTTTHHHHHHHHT--TTS--EE-SST-HHHHHHHHHHHHHHT-T----
T ss_pred EEEECCCcccchhhheec-cCCCEEEeecCcccccCcccHHHHHhccCCCCceEEEcc-CchHHHHHHHHHHhc-C---C
Confidence 88887764 333333 37899999987664421 112222 26665443310 134455555444333 3 6
Q ss_pred HHHHHHHHHHHHHhcc
Q 036520 436 EKLRVRAREAANTFND 451 (473)
Q Consensus 436 ~~~~~~a~~~~~~~~~ 451 (473)
++++++.+..++.+++
T Consensus 133 ~~l~~kl~~~~~~~~~ 148 (150)
T PF00731_consen 133 PELREKLRAYREKMKE 148 (150)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc
Confidence 8999999998887753
No 194
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=69.97 E-value=15 Score=27.43 Aligned_cols=35 Identities=11% Similarity=0.242 Sum_probs=25.1
Q ss_pred HHHHHHHhCCCcEEEEcCC---------cchHHHHHHHcCCCeE
Q 036520 107 PFKQFVAQQSVDWIIVDVM---------SHWAGKIAQEYHVPLL 141 (473)
Q Consensus 107 ~l~~ll~~~~pD~vI~D~~---------~~~~~~~A~~lgiP~v 141 (473)
.+.+++++.++|+||.-.. .+.-..+|...+||++
T Consensus 46 ~i~~~i~~g~id~VIn~~~~~~~~~~~d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 46 AILDLIKNGEIDLVINTLYPLGAQPHEDGKALRRAAENIDIPGA 89 (90)
T ss_pred HHHHHhcCCCeEEEEECCCcCcceeccCcHHHHHHHHHcCCCee
Confidence 3678889999999998532 1123357889999986
No 195
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=69.92 E-value=63 Score=26.84 Aligned_cols=136 Identities=13% Similarity=0.048 Sum_probs=75.7
Q ss_pred EEEEeecCcccCCHHHHHHHHHHHhcCCCCEEEEEcCCCCCCCccccCchhhhhhcCCCceEEecccchHHHhhCCCcce
Q 036520 285 VVFVGFGSECKLSKDQVYEIAYGLELSGLPFLWALRKPEWATDDVDALPLGFADTIRGKGIVSIGWAPQLEILAHPSIGT 364 (473)
Q Consensus 285 ~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~ 364 (473)
.|-|=+||-. +.+.++..++.|++.+..+-..+-+..+ -|+.+.++.+ =.....+++
T Consensus 4 ~V~IIMGS~S--D~~~mk~Aa~~L~~fgi~ye~~VvSAHR-------TPe~m~~ya~--------------~a~~~g~~v 60 (162)
T COG0041 4 KVGIIMGSKS--DWDTMKKAAEILEEFGVPYEVRVVSAHR-------TPEKMFEYAE--------------EAEERGVKV 60 (162)
T ss_pred eEEEEecCcc--hHHHHHHHHHHHHHcCCCeEEEEEeccC-------CHHHHHHHHH--------------HHHHCCCeE
Confidence 5667788865 7788888888998888876655443322 2332222111 111223344
Q ss_pred eeeccCchh---HHHHHhhCCceeccccccc---cccceeeeeec--ce--EEEEecCCCCCcCHHHHHHHHHHHhcCcc
Q 036520 365 SLFHAGWGS---VIETLQFGHSLVVLPLIID---QPLNARLLVDK--DL--AVQVERKDDGSFTRDGIAKALRLATVSEE 434 (473)
Q Consensus 365 ~ItHGG~~s---~~eal~~GvP~l~~P~~~D---Q~~na~~v~~~--G~--G~~l~~~~~~~~t~~~l~~~i~~ll~~~~ 434 (473)
+|.-.|.-- =+-|-..=+|+|++|.... -.+--.-+++. |+ |...--+ ..++.-++..|-.+ .
T Consensus 61 iIAgAGgAAHLPGmvAa~T~lPViGVPv~s~~L~GlDSL~SiVQMP~GvPVaTvaIg~---a~NAallAa~ILa~-~--- 133 (162)
T COG0041 61 IIAGAGGAAHLPGMVAAKTPLPVIGVPVQSKALSGLDSLLSIVQMPAGVPVATVAIGN---AANAALLAAQILAI-K--- 133 (162)
T ss_pred EEecCcchhhcchhhhhcCCCCeEeccCccccccchHHHHHHhcCCCCCeeEEEeecc---hhhHHHHHHHHHcC-C---
Confidence 666555321 1123345789999998632 21222223444 43 3222222 45666666555333 3
Q ss_pred hHHHHHHHHHHHHHhc
Q 036520 435 GEKLRVRAREAANTFN 450 (473)
Q Consensus 435 ~~~~~~~a~~~~~~~~ 450 (473)
|++++++..++++..+
T Consensus 134 d~~l~~kl~~~r~~~~ 149 (162)
T COG0041 134 DPELAEKLAEFREAQT 149 (162)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 6899999999998876
No 196
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=69.88 E-value=40 Score=29.38 Aligned_cols=100 Identities=14% Similarity=0.099 Sum_probs=61.0
Q ss_pred EEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCc--ccCCCeEEEEecCCccccccccCCCCCCC
Q 036520 6 HVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPKNIQRLPKPAPES--EVAALINFVEFPLPASAALDDKLLLPEGA 83 (473)
Q Consensus 6 ~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~--~~~~~i~~~~i~~~~~~~~~~~~~l~~~~ 83 (473)
.|.++...+.|=....+.+|-+.+.+|++|.++-.-.... ..+... ...+++.+.... .++....
T Consensus 24 ~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~---~~GE~~~l~~l~~v~~~~~g----------~~~~~~~ 90 (191)
T PRK05986 24 LLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAW---STGERNLLEFGGGVEFHVMG----------TGFTWET 90 (191)
T ss_pred eEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCC---ccCHHHHHhcCCCcEEEECC----------CCCcccC
Confidence 6888888999999999999999999999999876322110 011100 111467777665 2221110
Q ss_pred ccCCCCChhhHHHHHHHHhhhhhHHHHHHHhCCCcEEEEcCCc
Q 036520 84 EATVDIPSENIQYLKIAYDLLQHPFKQFVAQQSVDWIIVDVMS 126 (473)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~ 126 (473)
.... --....+.......+.+.+.++|+||-|-..
T Consensus 91 ----~~~~----e~~~~~~~~~~~a~~~l~~~~ydlvVLDEi~ 125 (191)
T PRK05986 91 ----QDRE----RDIAAAREGWEEAKRMLADESYDLVVLDELT 125 (191)
T ss_pred ----CCcH----HHHHHHHHHHHHHHHHHhCCCCCEEEEehhh
Confidence 1111 1122333445566677788899999999644
No 197
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=69.76 E-value=18 Score=33.04 Aligned_cols=40 Identities=15% Similarity=0.281 Sum_probs=28.5
Q ss_pred hHHHHHHHhCCCcEEEEc--CC----cchHHHHHHHcCCCeEEEec
Q 036520 106 HPFKQFVAQQSVDWIIVD--VM----SHWAGKIAQEYHVPLLLFSA 145 (473)
Q Consensus 106 ~~l~~ll~~~~pD~vI~D--~~----~~~~~~~A~~lgiP~v~~~~ 145 (473)
+.+.+++++.++++||== +| +--+..+|+.+|||++.+..
T Consensus 55 ~~l~~~l~~~~i~~VIDATHPfA~~is~~a~~ac~~~~ipyiR~eR 100 (248)
T PRK08057 55 EGLAAYLREEGIDLVIDATHPYAAQISANAAAACRALGIPYLRLER 100 (248)
T ss_pred HHHHHHHHHCCCCEEEECCCccHHHHHHHHHHHHHHhCCcEEEEeC
Confidence 356788889999997722 22 22344688999999999854
No 198
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=68.76 E-value=1.9 Score=32.81 Aligned_cols=84 Identities=21% Similarity=0.309 Sum_probs=48.2
Q ss_pred HHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCcccCCCeEEEEecCCccccccccCCCCCCCccCCCCChhhHHHHHHH
Q 036520 21 FFQLSIALAKSGVKVSFISTPKNIQRLPKPAPESEVAALINFVEFPLPASAALDDKLLLPEGAEATVDIPSENIQYLKIA 100 (473)
Q Consensus 21 ~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 100 (473)
++++|+.|.+.|+++ +++......+.+. ++.+..+. +....+ +.+.
T Consensus 2 ~~~~a~~l~~lG~~i--~AT~gTa~~L~~~--------Gi~~~~v~----------~~~~~~-----~~~~--------- 47 (95)
T PF02142_consen 2 IVPLAKRLAELGFEI--YATEGTAKFLKEH--------GIEVTEVV----------NKIGEG-----ESPD--------- 47 (95)
T ss_dssp HHHHHHHHHHTTSEE--EEEHHHHHHHHHT--------T--EEECC----------EEHSTG------GGT---------
T ss_pred HHHHHHHHHHCCCEE--EEChHHHHHHHHc--------CCCceeee----------eecccC-----ccCC---------
Confidence 578999999999763 4445555555543 66654443 000000 0000
Q ss_pred HhhhhhHHHHHHHhCCCcEEEEcCCcc---------hHHHHHHHcCCCeE
Q 036520 101 YDLLQHPFKQFVAQQSVDWIIVDVMSH---------WAGKIAQEYHVPLL 141 (473)
Q Consensus 101 ~~~~~~~l~~ll~~~~pD~vI~D~~~~---------~~~~~A~~lgiP~v 141 (473)
-...+.+++++.+.|+||...... .-..+|...+||++
T Consensus 48 ---g~~~i~~~i~~~~IdlVIn~~~~~~~~~~~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 48 ---GRVQIMDLIKNGKIDLVINTPYPFSDQEHTDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp ---HCHHHHHHHHTTSEEEEEEE--THHHHHTHHHHHHHHHHHHTTSHEE
T ss_pred ---chhHHHHHHHcCCeEEEEEeCCCCcccccCCcHHHHHHHHHcCCCCc
Confidence 000677899999999999875321 11357888999986
No 199
>PRK06849 hypothetical protein; Provisional
Probab=68.72 E-value=9.7 Score=37.57 Aligned_cols=38 Identities=21% Similarity=0.197 Sum_probs=30.5
Q ss_pred CCCccEEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 036520 1 MARKLHVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPK 42 (473)
Q Consensus 1 m~~~~~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~ 42 (473)
|.++|+||+.-... ...+++++.|.++||+|+++....
T Consensus 1 ~~~~~~VLI~G~~~----~~~l~iar~l~~~G~~Vi~~d~~~ 38 (389)
T PRK06849 1 MNTKKTVLITGARA----PAALELARLFHNAGHTVILADSLK 38 (389)
T ss_pred CCCCCEEEEeCCCc----HHHHHHHHHHHHCCCEEEEEeCCc
Confidence 77889999874332 258999999999999999987653
No 200
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=67.73 E-value=9.9 Score=27.73 Aligned_cols=34 Identities=24% Similarity=0.119 Sum_probs=30.3
Q ss_pred cEEEEecCCCccChHHHHHHHHHHHhCCCeEEEE
Q 036520 5 LHVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFI 38 (473)
Q Consensus 5 ~~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~ 38 (473)
.-++++..+...|....-.+|+.|+++|+.|...
T Consensus 16 k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~ 49 (79)
T PF12146_consen 16 KAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAY 49 (79)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 3588888999999999999999999999998754
No 201
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=67.06 E-value=12 Score=29.69 Aligned_cols=35 Identities=23% Similarity=0.295 Sum_probs=31.9
Q ss_pred cEEEEecCCCccChHHHHHHHHHHHhCCCeEEEEe
Q 036520 5 LHVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFIS 39 (473)
Q Consensus 5 ~~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~ 39 (473)
.|+++.+.+..-|-.-+.-++..|.++||+|.++-
T Consensus 1 ~~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d 35 (121)
T PF02310_consen 1 IRVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILD 35 (121)
T ss_dssp -EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEE
T ss_pred CEEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEEC
Confidence 37899999999999999999999999999999874
No 202
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=66.75 E-value=92 Score=27.53 Aligned_cols=148 Identities=13% Similarity=0.074 Sum_probs=81.2
Q ss_pred CcEEEEeecCcccCCHHHHHHHHHHHhcCCCCEEEEEcCCCCCCCccccCchhhhhhcCCCceEEecccchHHHhhCCCc
Q 036520 283 RSVVFVGFGSECKLSKDQVYEIAYGLELSGLPFLWALRKPEWATDDVDALPLGFADTIRGKGIVSIGWAPQLEILAHPSI 362 (473)
Q Consensus 283 ~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~ll~~~~~ 362 (473)
+.++.|+.|..+ ..-+..|.+.|..+.++-+... +.+.......++....--.+...+..+.+
T Consensus 10 k~vlVvGgG~va-------~rk~~~Ll~~ga~VtVvsp~~~----------~~l~~l~~~~~i~~~~~~~~~~dl~~~~l 72 (205)
T TIGR01470 10 RAVLVVGGGDVA-------LRKARLLLKAGAQLRVIAEELE----------SELTLLAEQGGITWLARCFDADILEGAFL 72 (205)
T ss_pred CeEEEECcCHHH-------HHHHHHHHHCCCEEEEEcCCCC----------HHHHHHHHcCCEEEEeCCCCHHHhCCcEE
Confidence 448888887665 3344555567877766543221 12222223335554322223445666666
Q ss_pred ceeeeccCchhHHHHH-----hhCCceecc--ccccccccceeeeeecceEEEEecCCCCCcCHHHHHHHHHHHhcCcch
Q 036520 363 GTSLFHAGWGSVIETL-----QFGHSLVVL--PLIIDQPLNARLLVDKDLAVQVERKDDGSFTRDGIAKALRLATVSEEG 435 (473)
Q Consensus 363 ~~~ItHGG~~s~~eal-----~~GvP~l~~--P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~t~~~l~~~i~~ll~~~~~ 435 (473)
+|..-|...+.+.+ ..|+|+-++ |-..| +..-..+.+-++-+.+......-.-+..|++.|++++.. ..
T Consensus 73 --Vi~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~-f~~pa~~~~g~l~iaisT~G~sP~la~~lr~~ie~~l~~-~~ 148 (205)
T TIGR01470 73 --VIAATDDEELNRRVAHAARARGVPVNVVDDPELCS-FIFPSIVDRSPVVVAISSGGAAPVLARLLRERIETLLPP-SL 148 (205)
T ss_pred --EEECCCCHHHHHHHHHHHHHcCCEEEECCCcccCe-EEEeeEEEcCCEEEEEECCCCCcHHHHHHHHHHHHhcch-hH
Confidence 88888876554443 467887433 33333 333334444456666665421123345788888888851 13
Q ss_pred HHHHHHHHHHHHHhcc
Q 036520 436 EKLRVRAREAANTFND 451 (473)
Q Consensus 436 ~~~~~~a~~~~~~~~~ 451 (473)
..+.+.+.+++..+++
T Consensus 149 ~~~~~~~~~~R~~~k~ 164 (205)
T TIGR01470 149 GDLATLAATWRDAVKK 164 (205)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 5567777777777653
No 203
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=66.61 E-value=51 Score=27.23 Aligned_cols=100 Identities=11% Similarity=0.145 Sum_probs=62.6
Q ss_pred CCCccEEEEecCCCccChHHHHHHHHHHHhC--CCeEEEEeCCCccccCCCCCCCcccCCCeEEEEecCCccccccccCC
Q 036520 1 MARKLHVVMLPWSAFGHLMPFFQLSIALAKS--GVKVSFISTPKNIQRLPKPAPESEVAALINFVEFPLPASAALDDKLL 78 (473)
Q Consensus 1 m~~~~~vl~~~~~~~gH~~p~l~la~~L~~~--Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~ 78 (473)
|+.+|+|++.. .-++=.-++.+++.|.+. |+++ ++ +....+.+... .|+.+..+- .+
T Consensus 1 ~~~~~~v~lsv--~d~dK~~l~~~a~~l~~ll~Gf~l-~A-T~gTa~~L~~~-------~Gi~v~~vi----------~~ 59 (142)
T PRK05234 1 MPARKRIALIA--HDHKKDDLVAWVKAHKDLLEQHEL-YA-TGTTGGLIQEA-------TGLDVTRLL----------SG 59 (142)
T ss_pred CCcCcEEEEEE--eccchHHHHHHHHHHHHHhcCCEE-EE-eChHHHHHHhc-------cCCeeEEEE----------cC
Confidence 56677887766 345567789999999999 9995 34 45555555542 145444431 11
Q ss_pred CCCCCccCCCCChhhHHHHHHHHhhhhhHHHHHHHhCCCcEEEE--cCCcc--------hHHHHHHHcCCCeEEE
Q 036520 79 LPEGAEATVDIPSENIQYLKIAYDLLQHPFKQFVAQQSVDWIIV--DVMSH--------WAGKIAQEYHVPLLLF 143 (473)
Q Consensus 79 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~--D~~~~--------~~~~~A~~lgiP~v~~ 143 (473)
+.+ ..+++.+++++.++|+||. |.... .-...|-.++||+++-
T Consensus 60 -~~g---------------------g~~~i~~~I~~g~i~lVInt~dp~~~~~~~~D~~~IRR~Av~~~IP~~T~ 112 (142)
T PRK05234 60 -PLG---------------------GDQQIGALIAEGKIDMLIFFRDPLTAQPHDPDVKALLRLADVWNIPVATN 112 (142)
T ss_pred -CCC---------------------CchhHHHHHHcCceeEEEEecCCCCCCcccchHHHHHHHHHHcCCCEEcC
Confidence 000 1235678889999999998 42221 1224688999999863
No 204
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=66.54 E-value=20 Score=35.78 Aligned_cols=32 Identities=25% Similarity=0.230 Sum_probs=25.7
Q ss_pred HHHHhCCCcEEEEcCCcchHHHHHHHcCCCeEEEe
Q 036520 110 QFVAQQSVDWIIVDVMSHWAGKIAQEYHVPLLLFS 144 (473)
Q Consensus 110 ~ll~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~ 144 (473)
+.+++.+||++|... -+..+|+++|||.+.+.
T Consensus 349 ~~l~~~~pDllig~s---~~~~~A~k~gIP~vr~g 380 (422)
T TIGR02015 349 EAVLEFEPDLAIGTT---PLVQFAKEHGIPALYFT 380 (422)
T ss_pred HHHhhCCCCEEEcCC---cchHHHHHcCCCEEEec
Confidence 455778999999883 35668999999999763
No 205
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=66.02 E-value=19 Score=38.94 Aligned_cols=111 Identities=16% Similarity=0.132 Sum_probs=64.3
Q ss_pred EEecccchH---HHhhCCCcceeeec---cCc-hhHHHHHhhCCceeccccccccccceeeeeecceEEEEecCCCCCcC
Q 036520 346 VSIGWAPQL---EILAHPSIGTSLFH---AGW-GSVIETLQFGHSLVVLPLIIDQPLNARLLVDKDLAVQVERKDDGSFT 418 (473)
Q Consensus 346 ~~~~~~pq~---~ll~~~~~~~~ItH---GG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~t 418 (473)
++.+++++. +++..+++ |+.- -|+ .++.|++++|+|-...|...+--.-+.-+. | |+.++.. +
T Consensus 345 ~~~~~~~~~~l~~ly~~aDv--~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~~l~--~-~llv~P~-----d 414 (726)
T PRK14501 345 YFYRSLPFEELVALYRAADV--ALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAAELA--E-ALLVNPN-----D 414 (726)
T ss_pred EEeCCCCHHHHHHHHHhccE--EEecccccccCcccceEEEEcCCCCceEEEecccchhHHhC--c-CeEECCC-----C
Confidence 455678874 56777887 6543 354 588999999775222222221111111111 2 6666654 7
Q ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHH
Q 036520 419 RDGIAKALRLATVSEEGEKLRVRAREAANTFNDKKLHDDYSVRFVEYLKI 468 (473)
Q Consensus 419 ~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (473)
.++++++|.++|+.. .++.+++.+++.+.+. .-+...-++.+++.+.+
T Consensus 415 ~~~la~ai~~~l~~~-~~e~~~r~~~~~~~v~-~~~~~~w~~~~l~~l~~ 462 (726)
T PRK14501 415 IEGIAAAIKRALEMP-EEEQRERMQAMQERLR-RYDVHKWASDFLDELRE 462 (726)
T ss_pred HHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHH
Confidence 899999999999721 2355666666666664 33455555555554443
No 206
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=65.92 E-value=22 Score=30.17 Aligned_cols=27 Identities=26% Similarity=0.306 Sum_probs=21.5
Q ss_pred cceeeeccCch------hHHHHHhhCCceeccc
Q 036520 362 IGTSLFHAGWG------SVIETLQFGHSLVVLP 388 (473)
Q Consensus 362 ~~~~ItHGG~~------s~~eal~~GvP~l~~P 388 (473)
.+++++|+|-| .+.||...++|||++.
T Consensus 61 ~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 93 (162)
T cd07037 61 PVAVVCTSGTAVANLLPAVVEAYYSGVPLLVLT 93 (162)
T ss_pred CEEEEECCchHHHHHhHHHHHHHhcCCCEEEEE
Confidence 33488888744 6779999999999994
No 207
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=65.42 E-value=1e+02 Score=27.64 Aligned_cols=151 Identities=11% Similarity=0.004 Sum_probs=84.2
Q ss_pred cccCCCCCcEEEEeecCcccCCHHHHHHHHHHHhcCCCCEEEEEcCCCCCCCccccCchhhhhhcCCCceEEecccchHH
Q 036520 276 WLDEQKPRSVVFVGFGSECKLSKDQVYEIAYGLELSGLPFLWALRKPEWATDDVDALPLGFADTIRGKGIVSIGWAPQLE 355 (473)
Q Consensus 276 ~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~ 355 (473)
|++..+ +.+++|+-|..+ ..-+..|.+.|.++.++.+.-. +.+....+.+++....---+..
T Consensus 20 ~l~~~~-~~VLVVGGG~VA-------~RK~~~Ll~~gA~VtVVap~i~----------~el~~l~~~~~i~~~~r~~~~~ 81 (223)
T PRK05562 20 SLLSNK-IKVLIIGGGKAA-------FIKGKTFLKKGCYVYILSKKFS----------KEFLDLKKYGNLKLIKGNYDKE 81 (223)
T ss_pred EEECCC-CEEEEECCCHHH-------HHHHHHHHhCCCEEEEEcCCCC----------HHHHHHHhCCCEEEEeCCCChH
Confidence 444433 448888777665 2223445567888777765321 1222222333444433222344
Q ss_pred HhhCCCcceeeeccCchhHHHHHhh-----CCceeccccccccccce-----eeeeecceEEEEecCCCCCcCHHHHHHH
Q 036520 356 ILAHPSIGTSLFHAGWGSVIETLQF-----GHSLVVLPLIIDQPLNA-----RLLVDKDLAVQVERKDDGSFTRDGIAKA 425 (473)
Q Consensus 356 ll~~~~~~~~ItHGG~~s~~eal~~-----GvP~l~~P~~~DQ~~na-----~~v~~~G~G~~l~~~~~~~~t~~~l~~~ 425 (473)
.|..+.+ +|.--+-..+.+.++. |+++.++ |++..+ ..+.+-++-+.+...+..-.-+..|++.
T Consensus 82 dl~g~~L--ViaATdD~~vN~~I~~~a~~~~~lvn~v----d~p~~~dFi~PAiv~rg~l~IaIST~G~sP~lar~lR~~ 155 (223)
T PRK05562 82 FIKDKHL--IVIATDDEKLNNKIRKHCDRLYKLYIDC----SDYKKGLCIIPYQRSTKNFVFALNTKGGSPKTSVFIGEK 155 (223)
T ss_pred HhCCCcE--EEECCCCHHHHHHHHHHHHHcCCeEEEc----CCcccCeEEeeeEEecCCEEEEEECCCcCcHHHHHHHHH
Confidence 4566665 8888787777776543 5555543 443333 3344445666666542112234568888
Q ss_pred HHHHhcCcchHHHHHHHHHHHHHhccC
Q 036520 426 LRLATVSEEGEKLRVRAREAANTFNDK 452 (473)
Q Consensus 426 i~~ll~~~~~~~~~~~a~~~~~~~~~~ 452 (473)
|++++.+ -..+.+.+.+++..+++.
T Consensus 156 ie~~l~~--~~~l~~~l~~~R~~vk~~ 180 (223)
T PRK05562 156 VKNFLKK--YDDFIEYVTKIRNKAKKN 180 (223)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHhh
Confidence 8888852 456788888888887754
No 208
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=64.93 E-value=15 Score=33.88 Aligned_cols=36 Identities=22% Similarity=0.171 Sum_probs=30.0
Q ss_pred EEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCCc
Q 036520 8 VMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPKN 43 (473)
Q Consensus 8 l~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~ 43 (473)
++..-|+.|-..-...+|..+++.|++|.++..+..
T Consensus 4 ~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~ 39 (254)
T cd00550 4 FFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPA 39 (254)
T ss_pred EEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCc
Confidence 344457789999999999999999999999987653
No 209
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=64.10 E-value=21 Score=27.80 Aligned_cols=84 Identities=15% Similarity=0.142 Sum_probs=56.1
Q ss_pred cChHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCcccCCCeEEEEecCCccccccccCCCCCCCccCCCCChhhHH
Q 036520 16 GHLMPFFQLSIALAKSGVKVSFISTPKNIQRLPKPAPESEVAALINFVEFPLPASAALDDKLLLPEGAEATVDIPSENIQ 95 (473)
Q Consensus 16 gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 95 (473)
++-.-++++++.|.+.|+++ ++ ++.....+... ++.+..+.. ..
T Consensus 10 ~~k~~~~~~~~~l~~~G~~l-~a-T~gT~~~l~~~--------gi~~~~v~~-----------~~--------------- 53 (110)
T cd01424 10 RDKPEAVEIAKRLAELGFKL-VA-TEGTAKYLQEA--------GIPVEVVNK-----------VS--------------- 53 (110)
T ss_pred CcHhHHHHHHHHHHHCCCEE-EE-chHHHHHHHHc--------CCeEEEEee-----------cC---------------
Confidence 35567889999999999997 34 44555555442 666655531 00
Q ss_pred HHHHHHhhhhhHHHHHHHhCCCcEEEEcCC-------cchHHHHHHHcCCCeEE
Q 036520 96 YLKIAYDLLQHPFKQFVAQQSVDWIIVDVM-------SHWAGKIAQEYHVPLLL 142 (473)
Q Consensus 96 ~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~-------~~~~~~~A~~lgiP~v~ 142 (473)
...+.+.+++++.++|+||.-.- .+.-...|-.+|||+++
T Consensus 54 -------~~~~~i~~~i~~~~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 54 -------EGRPNIVDLIKNGEIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred -------CCchhHHHHHHcCCeEEEEECCCCCccCccHHHHHHHHHHhCCCEEe
Confidence 01245678888999999998431 23445678999999984
No 210
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=63.91 E-value=1.1e+02 Score=31.27 Aligned_cols=110 Identities=15% Similarity=0.086 Sum_probs=66.2
Q ss_pred eEEecccchHH---HhhCCCcceeee--ccCchh-HHHHHhhCC----ceeccccccccccceeeeeecceEEEEecCCC
Q 036520 345 IVSIGWAPQLE---ILAHPSIGTSLF--HAGWGS-VIETLQFGH----SLVVLPLIIDQPLNARLLVDKDLAVQVERKDD 414 (473)
Q Consensus 345 v~~~~~~pq~~---ll~~~~~~~~It--HGG~~s-~~eal~~Gv----P~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~ 414 (473)
+++.+.+|+.+ ++..+++ ++|| .-|+|- ..|.++++. |+|.--+.+ -| +.+.-|+.+.+
T Consensus 364 ~~~~~~v~~~el~alYr~ADV-~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefaG----aa---~~l~~AllVNP--- 432 (487)
T TIGR02398 364 QFFTRSLPYEEVSAWFAMADV-MWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFAG----AA---VELKGALLTNP--- 432 (487)
T ss_pred EEEcCCCCHHHHHHHHHhCCE-EEECccccccCcchhhHHhhhcCCCCCEEEecccc----ch---hhcCCCEEECC---
Confidence 45667888754 6677787 2333 458884 459999987 444433322 11 22223555555
Q ss_pred CCcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHh
Q 036520 415 GSFTRDGIAKALRLATVSEEGEKLRVRAREAANTFNDKKLHDDYSVRFVEYLKIN 469 (473)
Q Consensus 415 ~~~t~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (473)
.+.++++++|.++|+-. ..+-++|.+++.+.+... ....=++.+++.+.+.
T Consensus 433 --~d~~~~A~ai~~AL~m~-~~Er~~R~~~l~~~v~~~-d~~~W~~~fl~~l~~~ 483 (487)
T TIGR02398 433 --YDPVRMDETIYVALAMP-KAEQQARMREMFDAVNYY-DVQRWADEFLAAVSPQ 483 (487)
T ss_pred --CCHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHhhC-CHHHHHHHHHHHhhhc
Confidence 48999999999999832 245567777777777633 3333344455555443
No 211
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=63.79 E-value=14 Score=31.95 Aligned_cols=43 Identities=7% Similarity=0.009 Sum_probs=26.8
Q ss_pred hhhHHHHHHHhCCCcEEEEcCCc-chHHHHHHHcCCCeEEEecc
Q 036520 104 LQHPFKQFVAQQSVDWIIVDVMS-HWAGKIAQEYHVPLLLFSAF 146 (473)
Q Consensus 104 ~~~~l~~ll~~~~pD~vI~D~~~-~~~~~~A~~lgiP~v~~~~~ 146 (473)
..+++.+.+++.+||++|+-.+. .-...+-+.....++-++++
T Consensus 67 ~~~~~~~~l~~~~~Dl~v~~~~~~il~~~~l~~~~~~~iNiHps 110 (181)
T PF00551_consen 67 NDEELLELLESLNPDLIVVAGYGRILPKEFLSIPPYGIINIHPS 110 (181)
T ss_dssp HHHHHHHHHHHTT-SEEEESS-SS---HHHHHHSTTSEEEEESS
T ss_pred hhhHHHHHHHhhccceeehhhhHHHhhhhhhhcccccEEEEeec
Confidence 34567788899999999887544 34444556666677776553
No 212
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=62.25 E-value=1.1e+02 Score=28.79 Aligned_cols=112 Identities=13% Similarity=0.029 Sum_probs=65.2
Q ss_pred cEEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCC-------cccCCCeEEEEecCCccccccccC
Q 036520 5 LHVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPKNIQRLPKPAPE-------SEVAALINFVEFPLPASAALDDKL 77 (473)
Q Consensus 5 ~~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~-------~~~~~~i~~~~i~~~~~~~~~~~~ 77 (473)
..|.+--.|+.|-=.-.=.|++.|.++||+|-++.-+....+.-.+.-. ....+++-+.++|....
T Consensus 52 ~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~------- 124 (323)
T COG1703 52 HVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGT------- 124 (323)
T ss_pred cEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCcc-------
Confidence 4677777788888888889999999999999988765544433221110 01123443443331000
Q ss_pred CCCCCCccCCCCChhhHHHHHHHHhhhhhHHHHHHHhCCCcEEEEcCCcc--hHHHHHHHcCCCeEEE
Q 036520 78 LLPEGAEATVDIPSENIQYLKIAYDLLQHPFKQFVAQQSVDWIIVDVMSH--WAGKIAQEYHVPLLLF 143 (473)
Q Consensus 78 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~--~~~~~A~~lgiP~v~~ 143 (473)
. ............++....+|+||.+-.-. .=..+++..++=.+.+
T Consensus 125 ------------l--------GGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev~I~~~aDt~~~v~ 172 (323)
T COG1703 125 ------------L--------GGLSRATREAIKLLDAAGYDVIIVETVGVGQSEVDIANMADTFLVVM 172 (323)
T ss_pred ------------c--------hhhhHHHHHHHHHHHhcCCCEEEEEecCCCcchhHHhhhcceEEEEe
Confidence 0 01111233445677778999999985332 2235666666655554
No 213
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=62.21 E-value=14 Score=30.37 Aligned_cols=38 Identities=21% Similarity=0.158 Sum_probs=34.7
Q ss_pred CccEEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 036520 3 RKLHVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFIST 40 (473)
Q Consensus 3 ~~~~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~ 40 (473)
++.||++.+.+.-||-...--+++.|+..|.+|.....
T Consensus 11 ~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~ 48 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGL 48 (143)
T ss_pred CCceEEEeccCccccccchHHHHHHHHhCCceEEecCC
Confidence 67899999999999999999999999999999987653
No 214
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=62.00 E-value=8.8 Score=33.36 Aligned_cols=38 Identities=21% Similarity=0.248 Sum_probs=27.3
Q ss_pred cEEEEecCCCccChHH------------HHHHHHHHHhCCCeEEEEeCCC
Q 036520 5 LHVVMLPWSAFGHLMP------------FFQLSIALAKSGVKVSFISTPK 42 (473)
Q Consensus 5 ~~vl~~~~~~~gH~~p------------~l~la~~L~~~Gh~Vt~~~~~~ 42 (473)
.|||+...++.-++.| -..||+++..+|++||++..+.
T Consensus 4 k~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~ 53 (185)
T PF04127_consen 4 KKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPS 53 (185)
T ss_dssp -EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TT
T ss_pred CEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCc
Confidence 4677777777655554 5789999999999999999874
No 215
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=61.82 E-value=16 Score=33.66 Aligned_cols=40 Identities=10% Similarity=0.045 Sum_probs=29.4
Q ss_pred HHHHHHHhCCCcEEEEcCCc------chHHHHHHHcCCCeEEEecc
Q 036520 107 PFKQFVAQQSVDWIIVDVMS------HWAGKIAQEYHVPLLLFSAF 146 (473)
Q Consensus 107 ~l~~ll~~~~pD~vI~D~~~------~~~~~~A~~lgiP~v~~~~~ 146 (473)
.|...+++..||+|++-..+ .-+..+|+.||+|++++...
T Consensus 103 ~La~ai~~~~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 103 ALAAAAQKAGFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred HHHHHHHHhCCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 34555566679999975432 36778999999999987663
No 216
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=61.79 E-value=49 Score=28.71 Aligned_cols=99 Identities=13% Similarity=0.093 Sum_probs=55.4
Q ss_pred EEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCC---CcccCCCeEEEEecCCccccccccCCCCCCC
Q 036520 7 VVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPKNIQRLPKPAP---ESEVAALINFVEFPLPASAALDDKLLLPEGA 83 (473)
Q Consensus 7 vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~---~~~~~~~i~~~~i~~~~~~~~~~~~~l~~~~ 83 (473)
|.+++..+.|-....+.+|-+-.-+|.+|-++.--... -..+. .+.....+.++..+ +++....
T Consensus 31 i~V~TG~GKGKTTAAlG~alRa~GhG~rv~vvQFiKg~---~~~GE~~~~~~~~~~v~~~~~~----------~g~tw~~ 97 (198)
T COG2109 31 IIVFTGNGKGKTTAALGLALRALGHGLRVGVVQFIKGG---WKYGEEAALEKFGLGVEFHGMG----------EGFTWET 97 (198)
T ss_pred EEEEecCCCChhHHHHHHHHHHhcCCCEEEEEEEeecC---cchhHHHHHHhhccceeEEecC----------CceeCCC
Confidence 56677778888887777777777778888776521111 00000 00112356666665 3333221
Q ss_pred ccCCCCChhhHHHHHHHHhhhhhHHHHHHHhCCCcEEEEcCCc
Q 036520 84 EATVDIPSENIQYLKIAYDLLQHPFKQFVAQQSVDWIIVDVMS 126 (473)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~ 126 (473)
.. ...+ . .......+...+.+++.++|+||.|-++
T Consensus 98 ~~---~~~d---~--~aa~~~w~~a~~~l~~~~ydlviLDEl~ 132 (198)
T COG2109 98 QD---READ---I--AAAKAGWEHAKEALADGKYDLVILDELN 132 (198)
T ss_pred cC---cHHH---H--HHHHHHHHHHHHHHhCCCCCEEEEehhh
Confidence 11 1111 1 3344445556677888899999999765
No 217
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=61.37 E-value=19 Score=31.19 Aligned_cols=47 Identities=15% Similarity=0.176 Sum_probs=31.4
Q ss_pred ccChHH-HHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCcccCCCeEEEEecC
Q 036520 15 FGHLMP-FFQLSIALAKSGVKVSFISTPKNIQRLPKPAPESEVAALINFVEFPL 67 (473)
Q Consensus 15 ~gH~~p-~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~ 67 (473)
+|=+-- .-.|+..|+++||+||++|.......-.. ...++++..++.
T Consensus 16 YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~~~------~y~gv~l~~i~~ 63 (185)
T PF09314_consen 16 YGGFETFVEELAPRLVSKGIDVTVYCRSDYYPYKEF------EYNGVRLVYIPA 63 (185)
T ss_pred cCcHHHHHHHHHHHHhcCCceEEEEEccCCCCCCCc------ccCCeEEEEeCC
Confidence 344443 45678888889999999998665433222 235788888873
No 218
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=60.34 E-value=1.2e+02 Score=26.55 Aligned_cols=118 Identities=13% Similarity=0.078 Sum_probs=73.8
Q ss_pred HHHHHHHHHhcCCCCEEEEEcCCCCCCCccccCchhhhhhcCCCceEEecccchHHHhhCCCcceeeeccCchhHHHHHh
Q 036520 300 QVYEIAYGLELSGLPFLWALRKPEWATDDVDALPLGFADTIRGKGIVSIGWAPQLEILAHPSIGTSLFHAGWGSVIETLQ 379 (473)
Q Consensus 300 ~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~ItHGG~~s~~eal~ 379 (473)
+-..+.+.+.+.+..+++..+. ..-+.+.|...++.+=+= -||++ .=.++|..+..+|+.
T Consensus 67 ~d~~l~~~l~~~~~dlvvLAGy-------MrIL~~~fl~~~~grIlN-----------IHPSL--LP~f~G~h~~~~A~~ 126 (200)
T COG0299 67 FDRALVEALDEYGPDLVVLAGY-------MRILGPEFLSRFEGRILN-----------IHPSL--LPAFPGLHAHEQALE 126 (200)
T ss_pred HHHHHHHHHHhcCCCEEEEcch-------HHHcCHHHHHHhhcceEe-----------cCccc--ccCCCCchHHHHHHH
Confidence 3344788888888887776653 344555555555432111 37888 888999999999999
Q ss_pred hCCceecccccc--ccccceeeeeecceEEEEecCCCCCcCHHHHHHHHHHHhcCcchHHHHHHHHHHHH
Q 036520 380 FGHSLVVLPLII--DQPLNARLLVDKDLAVQVERKDDGSFTRDGIAKALRLATVSEEGEKLRVRAREAAN 447 (473)
Q Consensus 380 ~GvP~l~~P~~~--DQ~~na~~v~~~G~G~~l~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~a~~~~~ 447 (473)
+|+..-++..++ +..+-.-.+.+.- +-+.. .=|.|+|.+.|.+. + ..-|-+..+.+.+
T Consensus 127 aG~k~sG~TVH~V~e~vD~GpII~Q~~--Vpv~~----~Dt~etl~~RV~~~-E---h~lyp~~v~~~~~ 186 (200)
T COG0299 127 AGVKVSGCTVHFVTEGVDTGPIIAQAA--VPVLP----GDTAETLEARVLEQ-E---HRLYPLAVKLLAE 186 (200)
T ss_pred cCCCccCcEEEEEccCCCCCCeEEEEe--eeecC----CCCHHHHHHHHHHH-H---HHHHHHHHHHHHh
Confidence 999997777543 4444444444332 22222 22888898888763 4 3455555555444
No 219
>PRK12342 hypothetical protein; Provisional
Probab=59.96 E-value=17 Score=33.35 Aligned_cols=40 Identities=8% Similarity=0.091 Sum_probs=29.3
Q ss_pred HHHHHHHhCCCcEEEEcCCc------chHHHHHHHcCCCeEEEecc
Q 036520 107 PFKQFVAQQSVDWIIVDVMS------HWAGKIAQEYHVPLLLFSAF 146 (473)
Q Consensus 107 ~l~~ll~~~~pD~vI~D~~~------~~~~~~A~~lgiP~v~~~~~ 146 (473)
.|...++..+||+|++--.+ .-+..+|+.||+|++++...
T Consensus 100 ~La~~i~~~~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~~ 145 (254)
T PRK12342 100 ALAAAIEKIGFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVSK 145 (254)
T ss_pred HHHHHHHHhCCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEEE
Confidence 44555566679999986433 34778999999999987653
No 220
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=59.27 E-value=41 Score=28.90 Aligned_cols=24 Identities=21% Similarity=0.205 Sum_probs=19.5
Q ss_pred EEecCCCccChHHHHHHHHHHHhC
Q 036520 8 VMLPWSAFGHLMPFFQLSIALAKS 31 (473)
Q Consensus 8 l~~~~~~~gH~~p~l~la~~L~~~ 31 (473)
.++-.|+.||..=|+.|-+.|.++
T Consensus 41 ~lVvlGSGGHT~EMlrLl~~l~~~ 64 (211)
T KOG3339|consen 41 TLVVLGSGGHTGEMLRLLEALQDL 64 (211)
T ss_pred EEEEEcCCCcHHHHHHHHHHHHhh
Confidence 344457889999999999999765
No 221
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=58.22 E-value=18 Score=33.54 Aligned_cols=52 Identities=13% Similarity=0.125 Sum_probs=37.3
Q ss_pred CCcceeeeccCchhHHHHHh------hCCceeccccccccccceeeeeecceEEEEecCCCCCcCHHHHHHHHHHHhcC
Q 036520 360 PSIGTSLFHAGWGSVIETLQ------FGHSLVVLPLIIDQPLNARLLVDKDLAVQVERKDDGSFTRDGIAKALRLATVS 432 (473)
Q Consensus 360 ~~~~~~ItHGG~~s~~eal~------~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~t~~~l~~~i~~ll~~ 432 (473)
+++ +|+-||-||++.++. .++|++++-.. .+|.-. .++.+++.+++.++++|
T Consensus 36 ~Dl--vi~iGGDGT~L~a~~~~~~~~~~iPilGIN~G-------------~lGFL~------~~~~~~~~~~l~~i~~g 93 (265)
T PRK04885 36 PDI--VISVGGDGTLLSAFHRYENQLDKVRFVGVHTG-------------HLGFYT------DWRPFEVDKLVIALAKD 93 (265)
T ss_pred CCE--EEEECCcHHHHHHHHHhcccCCCCeEEEEeCC-------------Cceecc------cCCHHHHHHHHHHHHcC
Confidence 445 999999999999976 47788776531 123222 34678888899998883
No 222
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.13 E-value=78 Score=29.37 Aligned_cols=113 Identities=19% Similarity=0.173 Sum_probs=61.5
Q ss_pred ceEEecccch---HHHhhCCCcceeeeccCchhHHHHHhhCCceeccccccccccceeeeeecceEEEEecCCCCCc---
Q 036520 344 GIVSIGWAPQ---LEILAHPSIGTSLFHAGWGSVIETLQFGHSLVVLPLIIDQPLNARLLVDKDLAVQVERKDDGSF--- 417 (473)
Q Consensus 344 nv~~~~~~pq---~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~--- 417 (473)
.+.+.+|+|| ..||--|++ -+-. |--|..-|..+|+|.+= ...-|..|+.... +---+++. -+.+
T Consensus 239 rvvklPFvpqddyd~LL~lcD~--n~VR-GEDSFVRAq~agkPflW--HIYpQdentHl~K---LeaFldky-~~~lp~~ 309 (370)
T COG4394 239 RVVKLPFVPQDDYDELLWLCDF--NLVR-GEDSFVRAQLAGKPFLW--HIYPQDENTHLAK---LEAFLDKY-CPFLPPN 309 (370)
T ss_pred EEEEecCCcHhHHHHHHHhccc--ceee-cchHHHHHHHcCCCcEE--EecCCccccHHHH---HHHHHHHh-CCCCCHH
Confidence 4667799998 778888887 3333 67799999999999752 1123444443211 00001111 0011
Q ss_pred CHHHHHHHHHHHhcCc----------chHHHHHHHHHHHHHhccCCCcHHHHHHHHHH
Q 036520 418 TRDGIAKALRLATVSE----------EGEKLRVRAREAANTFNDKKLHDDYSVRFVEY 465 (473)
Q Consensus 418 t~~~l~~~i~~ll~~~----------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 465 (473)
+.+.++..-...=.|. .-++.|+.|++++..+-..++..+.+..+++.
T Consensus 310 ~a~alrt~~~~~N~~~ls~~w~~f~~~~~~~r~~a~~wa~~l~~~~dlaekLvaF~ek 367 (370)
T COG4394 310 TAKALRTFWIAWNAGRLSDDWSYFFKNLKEWREHAKKWANHLIKNPDLAEKLVAFIEK 367 (370)
T ss_pred HHHHHHHHHHHhcCCcccccHHHHHHhhHHHHHHHHHHHHHHccCccHHHHHHHHHHH
Confidence 1222222211110110 02478999999999988777666555555543
No 223
>PRK14098 glycogen synthase; Provisional
Probab=58.05 E-value=15 Score=37.43 Aligned_cols=38 Identities=11% Similarity=0.081 Sum_probs=29.7
Q ss_pred cEEEEecCC------CccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 036520 5 LHVVMLPWS------AFGHLMPFFQLSIALAKSGVKVSFISTPK 42 (473)
Q Consensus 5 ~~vl~~~~~------~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~ 42 (473)
|||++++.- +.|=-.-+-.|.++|+++||+|.++.+..
T Consensus 6 ~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~y 49 (489)
T PRK14098 6 FKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPKY 49 (489)
T ss_pred cEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 799998763 22445567788999999999999999744
No 224
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=58.00 E-value=48 Score=27.97 Aligned_cols=99 Identities=18% Similarity=0.174 Sum_probs=53.6
Q ss_pred hhhhccccCCCCCcEEEEeecCcccCCHHHHHHHHHHHhcCCCCEEEEEcCCCCCCCccccCchhhhhhcCCCceEEecc
Q 036520 271 SKIFQWLDEQKPRSVVFVGFGSECKLSKDQVYEIAYGLELSGLPFLWALRKPEWATDDVDALPLGFADTIRGKGIVSIGW 350 (473)
Q Consensus 271 ~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~ 350 (473)
.++-++|.+.. ...++-|.. -.+....++..+.+-+++=+++..... ++.+ .......++
T Consensus 21 ~~lg~~La~~g---~~lv~Gg~~-----GlM~a~a~ga~~~gg~viGVlp~~l~~-------~~~~-----~~~~i~~~~ 80 (159)
T TIGR00725 21 YRLGKELAKKG---HILINGGRT-----GVMEAVSKGAREAGGLVVGILPDEDFA-------GNPY-----LTIKVKTGM 80 (159)
T ss_pred HHHHHHHHHCC---CEEEcCCch-----hHHHHHHHHHHHCCCeEEEECChhhcc-------CCCC-----ceEEEECCC
Confidence 34556676554 455553322 344556666656666666665533100 0000 001222333
Q ss_pred -cchHHHhhCCCcceeeeccCchhHHH---HHhhCCceecccc
Q 036520 351 -APQLEILAHPSIGTSLFHAGWGSVIE---TLQFGHSLVVLPL 389 (473)
Q Consensus 351 -~pq~~ll~~~~~~~~ItHGG~~s~~e---al~~GvP~l~~P~ 389 (473)
-+...++...+-.+++--||.||+.| ++.+++|+++++.
T Consensus 81 ~~~Rk~~m~~~sda~IvlpGG~GTL~E~~~a~~~~kpv~~l~~ 123 (159)
T TIGR00725 81 NFARNFILVRSADVVVSVGGGYGTAIEILGAYALGGPVVVLRG 123 (159)
T ss_pred cchHHHHHHHHCCEEEEcCCchhHHHHHHHHHHcCCCEEEEEC
Confidence 34555555444456667788898765 5889999998874
No 225
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=57.44 E-value=17 Score=32.91 Aligned_cols=37 Identities=8% Similarity=0.138 Sum_probs=28.3
Q ss_pred cEEEEecCCCccChHH------------HHHHHHHHHhCCCeEEEEeCC
Q 036520 5 LHVVMLPWSAFGHLMP------------FFQLSIALAKSGVKVSFISTP 41 (473)
Q Consensus 5 ~~vl~~~~~~~gH~~p------------~l~la~~L~~~Gh~Vt~~~~~ 41 (473)
|||++...|+.-.+.| -.+||++|.++||+|+++...
T Consensus 1 ~~vliT~G~T~e~iD~VR~itN~SSG~iG~aLA~~L~~~G~~V~li~r~ 49 (229)
T PRK06732 1 MKILITSGGTTEPIDSVRGITNHSTGQLGKIIAETFLAAGHEVTLVTTK 49 (229)
T ss_pred CEEEEcCCCcccccCCceeecCccchHHHHHHHHHHHhCCCEEEEEECc
Confidence 5777777777655554 367889999999999998743
No 226
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=56.89 E-value=49 Score=31.20 Aligned_cols=53 Identities=11% Similarity=0.056 Sum_probs=38.6
Q ss_pred CCCcceeeeccCchhHHHHHhh----CCceeccccccccccceeeeeecceEEEEecCCCCCcCHHHHHHHHHHHhcC
Q 036520 359 HPSIGTSLFHAGWGSVIETLQF----GHSLVVLPLIIDQPLNARLLVDKDLAVQVERKDDGSFTRDGIAKALRLATVS 432 (473)
Q Consensus 359 ~~~~~~~ItHGG~~s~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~t~~~l~~~i~~ll~~ 432 (473)
.+++ +|+=||-||+++++.. ++|++++... .+|.. . ..+.+++.++|.++++|
T Consensus 62 ~~d~--vi~~GGDGt~l~~~~~~~~~~~Pvlgin~G-------------~lGFl---~---~~~~~~~~~~l~~~~~g 118 (295)
T PRK01231 62 VCDL--VIVVGGDGSLLGAARALARHNVPVLGINRG-------------RLGFL---T---DIRPDELEFKLAEVLDG 118 (295)
T ss_pred CCCE--EEEEeCcHHHHHHHHHhcCCCCCEEEEeCC-------------ccccc---c---cCCHHHHHHHHHHHHcC
Confidence 3555 9999999999999753 6677776652 12321 1 45789999999999984
No 227
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=56.79 E-value=28 Score=32.80 Aligned_cols=57 Identities=11% Similarity=0.054 Sum_probs=40.8
Q ss_pred HHhhCCCcceeeeccCchhHHHHHh----hCCceeccccccccccceeeeeecceEEEEecCCCCCcCHHHHHHHHHHHh
Q 036520 355 EILAHPSIGTSLFHAGWGSVIETLQ----FGHSLVVLPLIIDQPLNARLLVDKDLAVQVERKDDGSFTRDGIAKALRLAT 430 (473)
Q Consensus 355 ~ll~~~~~~~~ItHGG~~s~~eal~----~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~t~~~l~~~i~~ll 430 (473)
++...+++ +|+=||-||++.+.. .++|++++-... +|.-. .++.+++.++|.+++
T Consensus 64 ~~~~~~D~--vi~lGGDGT~L~aa~~~~~~~~PilGIN~G~-------------lGFL~------~~~~~~~~~~l~~i~ 122 (296)
T PRK04539 64 ELGQYCDL--VAVLGGDGTFLSVAREIAPRAVPIIGINQGH-------------LGFLT------QIPREYMTDKLLPVL 122 (296)
T ss_pred hcCcCCCE--EEEECCcHHHHHHHHHhcccCCCEEEEecCC-------------CeEee------ccCHHHHHHHHHHHH
Confidence 33334566 999999999999975 367887765421 34333 357789999999999
Q ss_pred cC
Q 036520 431 VS 432 (473)
Q Consensus 431 ~~ 432 (473)
+|
T Consensus 123 ~g 124 (296)
T PRK04539 123 EG 124 (296)
T ss_pred cC
Confidence 84
No 228
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=56.58 E-value=21 Score=34.10 Aligned_cols=48 Identities=10% Similarity=0.173 Sum_probs=34.6
Q ss_pred HHHHHHhhhhhHHHHHHHhCCCcEEEEcCCcc-------hHH---HHHHHcCCCeEEE
Q 036520 96 YLKIAYDLLQHPFKQFVAQQSVDWIIVDVMSH-------WAG---KIAQEYHVPLLLF 143 (473)
Q Consensus 96 ~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~-------~~~---~~A~~lgiP~v~~ 143 (473)
++....+...+.+.+.+++.+||++|+-+-+. |+. .+.++++||.++-
T Consensus 60 yf~en~eea~~~i~~mv~~~~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vta 117 (349)
T PF07355_consen 60 YFNENKEEALKKILEMVKKLKPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTA 117 (349)
T ss_pred hhhhCHHHHHHHHHHHHHhcCCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEE
Confidence 44555566677888999999999999996331 222 3567999999863
No 229
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=55.56 E-value=15 Score=31.97 Aligned_cols=39 Identities=13% Similarity=0.017 Sum_probs=32.2
Q ss_pred EEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCCcc
Q 036520 6 HVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPKNI 44 (473)
Q Consensus 6 ~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~ 44 (473)
||++.-.|+.|=+.-.+.+.++|.+.|++|+++.++...
T Consensus 2 ~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~~A~ 40 (187)
T TIGR02852 2 RIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSETVQ 40 (187)
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEchhHH
Confidence 678877777777777779999999999999998877654
No 230
>PRK05920 aromatic acid decarboxylase; Validated
Probab=55.47 E-value=10 Score=33.42 Aligned_cols=42 Identities=17% Similarity=0.109 Sum_probs=32.9
Q ss_pred cEEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCCccccC
Q 036520 5 LHVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPKNIQRL 47 (473)
Q Consensus 5 ~~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~ 47 (473)
+||++.-.|+.+ .+=...+.+.|.+.||+|+++.+....+++
T Consensus 4 krIllgITGsia-a~ka~~lvr~L~~~g~~V~vi~T~~A~~fv 45 (204)
T PRK05920 4 KRIVLAITGASG-AIYGVRLLECLLAADYEVHLVISKAAQKVL 45 (204)
T ss_pred CEEEEEEeCHHH-HHHHHHHHHHHHHCCCEEEEEEChhHHHHH
Confidence 468777665444 478999999999999999999988766544
No 231
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=55.38 E-value=12 Score=32.36 Aligned_cols=42 Identities=14% Similarity=0.208 Sum_probs=33.4
Q ss_pred EEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCCccccCC
Q 036520 6 HVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPKNIQRLP 48 (473)
Q Consensus 6 ~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~ 48 (473)
||++...++.|=+. ...+.+.|.++|++|.++.++....++.
T Consensus 3 ~Ill~vtGsiaa~~-~~~li~~L~~~g~~V~vv~T~~A~~fi~ 44 (182)
T PRK07313 3 NILLAVSGSIAAYK-AADLTSQLTKRGYQVTVLMTKAATKFIT 44 (182)
T ss_pred EEEEEEeChHHHHH-HHHHHHHHHHCCCEEEEEEChhHHHHcC
Confidence 57777766655554 8999999999999999999887766654
No 232
>PF10835 DUF2573: Protein of unknown function (DUF2573); InterPro: IPR020393 This entry contains proteins with no known function.
Probab=54.91 E-value=63 Score=23.25 Aligned_cols=50 Identities=12% Similarity=0.114 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhcCcchHHHHHHHHHHHHHh--------------ccCCCcHHHHHHHHHHHHHh
Q 036520 420 DGIAKALRLATVSEEGEKLRVRAREAANTF--------------NDKKLHDDYSVRFVEYLKIN 469 (473)
Q Consensus 420 ~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~ 469 (473)
+.|.+.-+++|-|+.++++++..++|.--- ...|.+...+..+++.++.+
T Consensus 9 dgLveKytELL~Ge~~~e~~EkVk~W~lYshiaKsMPpL~kHWN~~~PeaK~~ik~li~~Ik~l 72 (82)
T PF10835_consen 9 DGLVEKYTELLLGETSPEMKEKVKQWALYSHIAKSMPPLAKHWNGTYPEAKEEIKELIEEIKQL 72 (82)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhCcHHHHhhcccCchHHHHHHHHHHHHHHH
Confidence 567888889998888999999999876431 13566677888888887654
No 233
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=54.57 E-value=83 Score=29.19 Aligned_cols=29 Identities=21% Similarity=0.279 Sum_probs=20.7
Q ss_pred CCccChHHHHHHHHHHHhCCCeEEEEeCCCc
Q 036520 13 SAFGHLMPFFQLSIALAKSGVKVSFISTPKN 43 (473)
Q Consensus 13 ~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~ 43 (473)
++.|=+- -+|..+|.+.||+||+++-...
T Consensus 5 GgTGlIG--~~L~~~L~~~gh~v~iltR~~~ 33 (297)
T COG1090 5 GGTGLIG--RALTARLRKGGHQVTILTRRPP 33 (297)
T ss_pred ccccchh--HHHHHHHHhCCCeEEEEEcCCc
Confidence 3444443 3577889999999999996543
No 234
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=53.37 E-value=77 Score=30.76 Aligned_cols=96 Identities=14% Similarity=0.130 Sum_probs=52.2
Q ss_pred EEEEeecCcccCCHHHHHHHHHHHhcCCCCEEEEEcCCCCCCCccccCch-hhhh-hcCCCceEEe-cc-----------
Q 036520 285 VVFVGFGSECKLSKDQVYEIAYGLELSGLPFLWALRKPEWATDDVDALPL-GFAD-TIRGKGIVSI-GW----------- 350 (473)
Q Consensus 285 ~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~p~-~~~~-~~~~~nv~~~-~~----------- 350 (473)
+++.+-||.+..-|. .++++.+++.+++++|+....... ..-+|. ++.- ......+.-. .|
T Consensus 4 i~~~~GGTGGHi~Pa--la~a~~l~~~g~~v~~vg~~~~~e---~~l~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 78 (352)
T PRK12446 4 IVFTGGGSAGHVTPN--LAIIPYLKEDNWDISYIGSHQGIE---KTIIEKENIPYYSISSGKLRRYFDLKNIKDPFLVMK 78 (352)
T ss_pred EEEEcCCcHHHHHHH--HHHHHHHHhCCCEEEEEECCCccc---cccCcccCCcEEEEeccCcCCCchHHHHHHHHHHHH
Confidence 677777777643332 345666777789999987554322 111221 0100 0000000000 00
Q ss_pred --cchHHHhh--CCCcceeeeccCchh---HHHHHhhCCceecc
Q 036520 351 --APQLEILA--HPSIGTSLFHAGWGS---VIETLQFGHSLVVL 387 (473)
Q Consensus 351 --~pq~~ll~--~~~~~~~ItHGG~~s---~~eal~~GvP~l~~ 387 (473)
.--..++. +|++ +|++||+-| +..|...|+|+++.
T Consensus 79 ~~~~~~~i~~~~kPdv--vi~~Ggy~s~p~~~aa~~~~~p~~i~ 120 (352)
T PRK12446 79 GVMDAYVRIRKLKPDV--IFSKGGFVSVPVVIGGWLNRVPVLLH 120 (352)
T ss_pred HHHHHHHHHHhcCCCE--EEecCchhhHHHHHHHHHcCCCEEEE
Confidence 00012333 4566 999999986 99999999999864
No 235
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=52.97 E-value=2e+02 Score=26.97 Aligned_cols=104 Identities=13% Similarity=0.050 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCCccccCCCCC---CCcccCCCeEEEEecCCccccccccCCCCCCCccCCCCChhhHH
Q 036520 19 MPFFQLSIALAKSGVKVSFISTPKNIQRLPKPA---PESEVAALINFVEFPLPASAALDDKLLLPEGAEATVDIPSENIQ 95 (473)
Q Consensus 19 ~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~---~~~~~~~~i~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 95 (473)
.+-+.+++.|+++|++|..+..+...+.+.... .....-...++.-+|.|..+ ++-.- .....
T Consensus 11 ~r~~~~~~~l~~~g~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~-----~~~~i--~~~~~------- 76 (287)
T TIGR02853 11 ARQLELIRKLEELDAKISLIGFDQLEDGFTGAVKCELLELDLTTLDVVILPVPGTS-----HDGKV--ATVFS------- 76 (287)
T ss_pred HHHHHHHHHHHHCCCEEEEEeccccccccccceeecchhhhhccCCEEEECCcccc-----CCceE--ecccc-------
Confidence 467889999999999999998763322111100 00011135667777766541 11000 00000
Q ss_pred HHHHHHhhhhhHH-HHHHHhCCCcEEEEcCCcchHHH-HHHHcCCCeEEE
Q 036520 96 YLKIAYDLLQHPF-KQFVAQQSVDWIIVDVMSHWAGK-IAQEYHVPLLLF 143 (473)
Q Consensus 96 ~~~~~~~~~~~~l-~~ll~~~~pD~vI~D~~~~~~~~-~A~~lgiP~v~~ 143 (473)
...-.+ .++++..++-++++-.....-.. .|+..||+++-+
T Consensus 77 -------~~~~~l~~~~l~~~~~~~~~~~G~~~~~l~~~a~~~gi~v~~~ 119 (287)
T TIGR02853 77 -------NEKVVLTPELLESTKGHCTIYVGISNPYLEQLAADAGVKLIEL 119 (287)
T ss_pred -------cCCccccHHHHHhcCCCCEEEEecCCHHHHHHHHHCCCeEEEE
Confidence 000011 23455556666666656655555 899999998854
No 236
>PRK07206 hypothetical protein; Provisional
Probab=52.62 E-value=64 Score=32.02 Aligned_cols=34 Identities=15% Similarity=0.169 Sum_probs=23.8
Q ss_pred hHHHHHHHhCCCcEEEEc--CCcchHHHHHHHcCCC
Q 036520 106 HPFKQFVAQQSVDWIIVD--VMSHWAGKIAQEYHVP 139 (473)
Q Consensus 106 ~~l~~ll~~~~pD~vI~D--~~~~~~~~~A~~lgiP 139 (473)
+.+.+++++.++|.||.- .....+..+++.+++|
T Consensus 60 ~~l~~~~~~~~~d~vi~~~e~~~~~~a~l~~~l~l~ 95 (416)
T PRK07206 60 DDLVEFLRKLGPEAIIAGAESGVELADRLAEILTPQ 95 (416)
T ss_pred HHHHHHHHHcCCCEEEECCCccHHHHHHHHHhcCCC
Confidence 355667788899999954 3333455677888988
No 237
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=52.51 E-value=51 Score=27.91 Aligned_cols=28 Identities=11% Similarity=0.144 Sum_probs=22.2
Q ss_pred cceeeeccCc------hhHHHHHhhCCceecccc
Q 036520 362 IGTSLFHAGW------GSVIETLQFGHSLVVLPL 389 (473)
Q Consensus 362 ~~~~ItHGG~------~s~~eal~~GvP~l~~P~ 389 (473)
.+++++|.|- +.+.+|...++|||++.-
T Consensus 64 ~~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~g 97 (164)
T cd07039 64 LGVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIAG 97 (164)
T ss_pred CEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEec
Confidence 3448888774 478899999999999963
No 238
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=52.23 E-value=30 Score=32.81 Aligned_cols=54 Identities=9% Similarity=0.124 Sum_probs=39.9
Q ss_pred hCCCcceeeeccCchhHHHHHhh----CCceeccccccccccceeeeeecceEEEEecCCCCCcCHHHHHHHHHHHhcC
Q 036520 358 AHPSIGTSLFHAGWGSVIETLQF----GHSLVVLPLIIDQPLNARLLVDKDLAVQVERKDDGSFTRDGIAKALRLATVS 432 (473)
Q Consensus 358 ~~~~~~~~ItHGG~~s~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~t~~~l~~~i~~ll~~ 432 (473)
..+++ +|+=||-||++.+... ++|++++.... +|.-. .++.+++.++|+++++|
T Consensus 71 ~~~D~--vi~lGGDGT~L~aar~~~~~~~PilGIN~G~-------------lGFL~------~~~~~~~~~~l~~i~~g 128 (306)
T PRK03372 71 DGCEL--VLVLGGDGTILRAAELARAADVPVLGVNLGH-------------VGFLA------EAEAEDLDEAVERVVDR 128 (306)
T ss_pred cCCCE--EEEEcCCHHHHHHHHHhccCCCcEEEEecCC-------------Cceec------cCCHHHHHHHHHHHHcC
Confidence 34555 9999999999998764 78888776521 34333 35678999999999984
No 239
>PLN02929 NADH kinase
Probab=52.21 E-value=24 Score=33.25 Aligned_cols=64 Identities=6% Similarity=-0.004 Sum_probs=41.9
Q ss_pred CCcceeeeccCchhHHHHHh---hCCceecccccc------ccccceeeeeecceEEEEecCCCCCcCHHHHHHHHHHHh
Q 036520 360 PSIGTSLFHAGWGSVIETLQ---FGHSLVVLPLII------DQPLNARLLVDKDLAVQVERKDDGSFTRDGIAKALRLAT 430 (473)
Q Consensus 360 ~~~~~~ItHGG~~s~~eal~---~GvP~l~~P~~~------DQ~~na~~v~~~G~G~~l~~~~~~~~t~~~l~~~i~~ll 430 (473)
+++ +|+-||-||++.|.. .++|++++-... +++.|.-. +..-+|... .++.+++.++|.+++
T Consensus 65 ~Dl--vi~lGGDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~~~-~~r~lGfL~------~~~~~~~~~~L~~il 135 (301)
T PLN02929 65 VDL--VVAVGGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDEFD-ARRSTGHLC------AATAEDFEQVLDDVL 135 (301)
T ss_pred CCE--EEEECCcHHHHHHHHHcCCCCcEEEEECCCcccccccccccccc-cccCccccc------cCCHHHHHHHHHHHH
Confidence 455 999999999999854 468888875532 12333311 111244333 456889999999999
Q ss_pred cC
Q 036520 431 VS 432 (473)
Q Consensus 431 ~~ 432 (473)
+|
T Consensus 136 ~g 137 (301)
T PLN02929 136 FG 137 (301)
T ss_pred cC
Confidence 84
No 240
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=52.06 E-value=26 Score=32.84 Aligned_cols=56 Identities=13% Similarity=0.057 Sum_probs=38.5
Q ss_pred HhhCCCcceeeeccCchhHHHHHhh----CCceeccccccccccceeeeeecceEEEEecCCCCCcCHHHHHHHHHHHhc
Q 036520 356 ILAHPSIGTSLFHAGWGSVIETLQF----GHSLVVLPLIIDQPLNARLLVDKDLAVQVERKDDGSFTRDGIAKALRLATV 431 (473)
Q Consensus 356 ll~~~~~~~~ItHGG~~s~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~t~~~l~~~i~~ll~ 431 (473)
+...+++ +|+-||-||++.+... ++|++++-... +|... .++.+++.+++.++++
T Consensus 61 ~~~~~Dl--vi~iGGDGT~L~aa~~~~~~~~PilGIN~G~-------------lGFLt------~~~~~~~~~~l~~i~~ 119 (287)
T PRK14077 61 LFKISDF--LISLGGDGTLISLCRKAAEYDKFVLGIHAGH-------------LGFLT------DITVDEAEKFFQAFFQ 119 (287)
T ss_pred cccCCCE--EEEECCCHHHHHHHHHhcCCCCcEEEEeCCC-------------cccCC------cCCHHHHHHHHHHHHc
Confidence 3334555 9999999999988663 67777654321 23221 4567899999999988
Q ss_pred C
Q 036520 432 S 432 (473)
Q Consensus 432 ~ 432 (473)
|
T Consensus 120 g 120 (287)
T PRK14077 120 G 120 (287)
T ss_pred C
Confidence 4
No 241
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=51.78 E-value=25 Score=34.40 Aligned_cols=36 Identities=17% Similarity=0.158 Sum_probs=27.9
Q ss_pred CCCccEEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 036520 1 MARKLHVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFIST 40 (473)
Q Consensus 1 m~~~~~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~ 40 (473)
|+++|+|++. |+.|.+- ..|++.|.++||+|+.+..
T Consensus 18 ~~~~~~IlVt--GgtGfIG--~~l~~~L~~~G~~V~~v~r 53 (370)
T PLN02695 18 PSEKLRICIT--GAGGFIA--SHIARRLKAEGHYIIASDW 53 (370)
T ss_pred CCCCCEEEEE--CCccHHH--HHHHHHHHhCCCEEEEEEe
Confidence 5677898876 5666654 4678999999999998864
No 242
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=50.73 E-value=29 Score=32.60 Aligned_cols=56 Identities=9% Similarity=0.148 Sum_probs=40.0
Q ss_pred HhhCCCcceeeeccCchhHHHHHhh----CCceeccccccccccceeeeeecceEEEEecCCCCCcCHHHHHHHHHHHhc
Q 036520 356 ILAHPSIGTSLFHAGWGSVIETLQF----GHSLVVLPLIIDQPLNARLLVDKDLAVQVERKDDGSFTRDGIAKALRLATV 431 (473)
Q Consensus 356 ll~~~~~~~~ItHGG~~s~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~t~~~l~~~i~~ll~ 431 (473)
+...+++ +|+=||-||++.+... ++|++++-... +|..- .++.+++.+++.++++
T Consensus 61 ~~~~~dl--vi~lGGDGT~L~aa~~~~~~~~PilGIN~G~-------------lGFLt------~~~~~~~~~~l~~i~~ 119 (292)
T PRK01911 61 LDGSADM--VISIGGDGTFLRTATYVGNSNIPILGINTGR-------------LGFLA------TVSKEEIEETIDELLN 119 (292)
T ss_pred cccCCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEecCC-------------CCccc------ccCHHHHHHHHHHHHc
Confidence 3334555 9999999999999773 67877765421 33222 4567899999999998
Q ss_pred C
Q 036520 432 S 432 (473)
Q Consensus 432 ~ 432 (473)
|
T Consensus 120 g 120 (292)
T PRK01911 120 G 120 (292)
T ss_pred C
Confidence 4
No 243
>PLN02470 acetolactate synthase
Probab=50.54 E-value=41 Score=35.29 Aligned_cols=92 Identities=17% Similarity=0.166 Sum_probs=52.5
Q ss_pred eecCcccCCH--HHHHHHHHHHhcCCCCEEEEEcCCCCCCCccccCchhhhhhcCCCceEEeccc-chHHH-------hh
Q 036520 289 GFGSECKLSK--DQVYEIAYGLELSGLPFLWALRKPEWATDDVDALPLGFADTIRGKGIVSIGWA-PQLEI-------LA 358 (473)
Q Consensus 289 s~Gs~~~~~~--~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~-pq~~l-------l~ 358 (473)
+|||....+. ..-+.+++.|++.|.+.++-+.++... .+-+.+. +.++++...-. .+.+. ..
T Consensus 2 ~~~~~~~~~~~~~~a~~l~~~L~~~GV~~vFg~pG~~~~-----~l~dal~---~~~~i~~i~~rhE~~A~~~Adgyar~ 73 (585)
T PLN02470 2 TFQSRFAPDEPRKGADILVEALEREGVDTVFAYPGGASM-----EIHQALT---RSNCIRNVLCRHEQGEVFAAEGYAKA 73 (585)
T ss_pred CcccCCCCCccccHHHHHHHHHHHcCCCEEEEcCCcccH-----HHHHHHh---ccCCceEEEeccHHHHHHHHHHHHHH
Confidence 4566554222 224668888888888888888776322 1111110 12233332111 11111 12
Q ss_pred CCCcceeeeccCc------hhHHHHHhhCCceeccc
Q 036520 359 HPSIGTSLFHAGW------GSVIETLQFGHSLVVLP 388 (473)
Q Consensus 359 ~~~~~~~ItHGG~------~s~~eal~~GvP~l~~P 388 (473)
.-..+++++|.|- +.+.+|.+.++|||++.
T Consensus 74 tg~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 74 SGKVGVCIATSGPGATNLVTGLADALLDSVPLVAIT 109 (585)
T ss_pred hCCCEEEEECCCccHHHHHHHHHHHHhcCCcEEEEe
Confidence 2345568899885 47889999999999995
No 244
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=50.27 E-value=35 Score=35.33 Aligned_cols=93 Identities=15% Similarity=0.054 Sum_probs=50.3
Q ss_pred cchHHHhhCCCcceeeecc-Cc-hhHHHHHhhCCceecccccc-----ccccceeeeeecceEEEEecCCCCCcCHHHHH
Q 036520 351 APQLEILAHPSIGTSLFHA-GW-GSVIETLQFGHSLVVLPLII-----DQPLNARLLVDKDLAVQVERKDDGSFTRDGIA 423 (473)
Q Consensus 351 ~pq~~ll~~~~~~~~ItHG-G~-~s~~eal~~GvP~l~~P~~~-----DQ~~na~~v~~~G~G~~l~~~~~~~~t~~~l~ 423 (473)
++..+++.-|++++|-+-= =| -|-+||+++|||.|.--+.+ .+... .-...|+-+.-+. .-+.++..
T Consensus 461 l~Y~dfv~GcdLgvFPSYYEPWGYTPlE~~a~gVPsITTnLsGFG~~~~~~~~--~~~~~GV~VvdR~----~~n~~e~v 534 (633)
T PF05693_consen 461 LDYYDFVRGCDLGVFPSYYEPWGYTPLECTAFGVPSITTNLSGFGCWMQEHIE--DPEEYGVYVVDRR----DKNYDESV 534 (633)
T ss_dssp S-HHHHHHHSSEEEE--SSBSS-HHHHHHHHTT--EEEETTBHHHHHHHTTS---HHGGGTEEEE-SS----SS-HHHHH
T ss_pred CCHHHHhccCceeeeccccccccCChHHHhhcCCceeeccchhHHHHHHHhhc--cCcCCcEEEEeCC----CCCHHHHH
Confidence 3667888888887776621 13 38999999999999887632 22222 1123466654444 34555555
Q ss_pred HHHHHHh----c-Ccc-hHHHHHHHHHHHHHh
Q 036520 424 KALRLAT----V-SEE-GEKLRVRAREAANTF 449 (473)
Q Consensus 424 ~~i~~ll----~-~~~-~~~~~~~a~~~~~~~ 449 (473)
+.|.+.| . +.+ --..|.+|+++++.+
T Consensus 535 ~~la~~l~~f~~~~~rqri~~Rn~ae~LS~~~ 566 (633)
T PF05693_consen 535 NQLADFLYKFCQLSRRQRIIQRNRAERLSDLA 566 (633)
T ss_dssp HHHHHHHHHHHT--HHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 5555544 3 111 134677777777665
No 245
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=50.16 E-value=20 Score=33.30 Aligned_cols=59 Identities=12% Similarity=0.117 Sum_probs=39.9
Q ss_pred chHHHhhCCCcceeeeccCchhHHHHHh----hCCceeccccccccccceeeeeecceEEEEecCCCCCcCHHHHHHHHH
Q 036520 352 PQLEILAHPSIGTSLFHAGWGSVIETLQ----FGHSLVVLPLIIDQPLNARLLVDKDLAVQVERKDDGSFTRDGIAKALR 427 (473)
Q Consensus 352 pq~~ll~~~~~~~~ItHGG~~s~~eal~----~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~t~~~l~~~i~ 427 (473)
++.++...+++ +|+=||-||++.+.. .++|++++-... +|... .++.+++.+++.
T Consensus 35 ~~~~~~~~~d~--vi~iGGDGT~L~aa~~~~~~~~PilgIn~G~-------------lGFL~------~~~~~~~~~~l~ 93 (272)
T PRK02231 35 SLEEIGQRAQL--AIVIGGDGNMLGRARVLAKYDIPLIGINRGN-------------LGFLT------DIDPKNAYEQLE 93 (272)
T ss_pred ChHHhCcCCCE--EEEECCcHHHHHHHHHhccCCCcEEEEeCCC-------------Ccccc------cCCHHHHHHHHH
Confidence 33444445666 999999999998855 367877664321 34332 346788888888
Q ss_pred HHhc
Q 036520 428 LATV 431 (473)
Q Consensus 428 ~ll~ 431 (473)
++++
T Consensus 94 ~~~~ 97 (272)
T PRK02231 94 ACLE 97 (272)
T ss_pred HHHh
Confidence 8887
No 246
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=48.30 E-value=37 Score=29.87 Aligned_cols=38 Identities=18% Similarity=0.018 Sum_probs=34.3
Q ss_pred ccEEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 036520 4 KLHVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTP 41 (473)
Q Consensus 4 ~~~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 41 (473)
+.+|++.+.++-.|-....=++..|..+|++|+++...
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~ 119 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRD 119 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCC
Confidence 46899999999999999999999999999999987754
No 247
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=48.27 E-value=39 Score=29.43 Aligned_cols=43 Identities=16% Similarity=0.342 Sum_probs=31.6
Q ss_pred hHHHHHHHhCCCc--EEEEcCCc-chHHHHHHHcCCCeEEEecchh
Q 036520 106 HPFKQFVAQQSVD--WIIVDVMS-HWAGKIAQEYHVPLLLFSAFSA 148 (473)
Q Consensus 106 ~~l~~ll~~~~pD--~vI~D~~~-~~~~~~A~~lgiP~v~~~~~~~ 148 (473)
..+.+++++..++ ++|...+- +.|..+|+++++|.|.+.|+..
T Consensus 47 ~~l~~~i~~~~~~~~~liGSSlGG~~A~~La~~~~~~avLiNPav~ 92 (187)
T PF05728_consen 47 AQLEQLIEELKPENVVLIGSSLGGFYATYLAERYGLPAVLINPAVR 92 (187)
T ss_pred HHHHHHHHhCCCCCeEEEEEChHHHHHHHHHHHhCCCEEEEcCCCC
Confidence 4556777776665 67766554 6788899999999999876544
No 248
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=46.75 E-value=30 Score=35.60 Aligned_cols=35 Identities=17% Similarity=0.216 Sum_probs=27.9
Q ss_pred HHHHHHHhCCCcEEEEcCCcchHHHHHHHcCCCeEEEe
Q 036520 107 PFKQFVAQQSVDWIIVDVMSHWAGKIAQEYHVPLLLFS 144 (473)
Q Consensus 107 ~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~ 144 (473)
++.++|++.+||+||.+.+ ...+|+++|||++.++
T Consensus 365 ei~~~I~~~~pdliiGs~~---er~ia~~lgiP~~~is 399 (513)
T CHL00076 365 EVGDMIARVEPSAIFGTQM---ERHIGKRLDIPCGVIS 399 (513)
T ss_pred HHHHHHHhcCCCEEEECch---hhHHHHHhCCCEEEee
Confidence 4567778889999999973 4456899999998875
No 249
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=46.68 E-value=31 Score=32.71 Aligned_cols=53 Identities=13% Similarity=0.170 Sum_probs=38.5
Q ss_pred CCCcceeeeccCchhHHHHHhh----CCceeccccccccccceeeeeecceEEEEecCCCCCcCHHHHHHHHHHHhcC
Q 036520 359 HPSIGTSLFHAGWGSVIETLQF----GHSLVVLPLIIDQPLNARLLVDKDLAVQVERKDDGSFTRDGIAKALRLATVS 432 (473)
Q Consensus 359 ~~~~~~~ItHGG~~s~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~t~~~l~~~i~~ll~~ 432 (473)
.+++ +|+=||-||++.+... ++|++++-.. .+|... .++.+++.++|.++++|
T Consensus 68 ~~Dl--vi~iGGDGTlL~aar~~~~~~iPilGIN~G-------------~lGFLt------~~~~~~~~~~l~~l~~g 124 (305)
T PRK02649 68 SMKF--AIVLGGDGTVLSAARQLAPCGIPLLTINTG-------------HLGFLT------EAYLNQLDEAIDQVLAG 124 (305)
T ss_pred CcCE--EEEEeCcHHHHHHHHHhcCCCCcEEEEeCC-------------CCcccc------cCCHHHHHHHHHHHHcC
Confidence 3455 9999999999999774 7788877431 123222 45678999999999984
No 250
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=46.39 E-value=35 Score=32.15 Aligned_cols=57 Identities=12% Similarity=0.159 Sum_probs=39.4
Q ss_pred HHhhCCCcceeeeccCchhHHHHHh----hCCceeccccccccccceeeeeecceEEEEecCCCCCcCHHHHHHHHHHHh
Q 036520 355 EILAHPSIGTSLFHAGWGSVIETLQ----FGHSLVVLPLIIDQPLNARLLVDKDLAVQVERKDDGSFTRDGIAKALRLAT 430 (473)
Q Consensus 355 ~ll~~~~~~~~ItHGG~~s~~eal~----~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~t~~~l~~~i~~ll 430 (473)
++...+++ +|+=||-||++.++. +++|++.+-... +|..- .++.+++.+++++++
T Consensus 59 ~~~~~~d~--vi~lGGDGT~L~aa~~~~~~~~Pilgin~G~-------------lGFl~------~~~~~~~~~~l~~i~ 117 (292)
T PRK03378 59 EIGQQADL--AIVVGGDGNMLGAARVLARYDIKVIGINRGN-------------LGFLT------DLDPDNALQQLSDVL 117 (292)
T ss_pred hcCCCCCE--EEEECCcHHHHHHHHHhcCCCCeEEEEECCC-------------CCccc------ccCHHHHHHHHHHHH
Confidence 33334555 999999999999975 366777664421 23222 356789999999999
Q ss_pred cC
Q 036520 431 VS 432 (473)
Q Consensus 431 ~~ 432 (473)
+|
T Consensus 118 ~g 119 (292)
T PRK03378 118 EG 119 (292)
T ss_pred cC
Confidence 84
No 251
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=46.05 E-value=13 Score=32.17 Aligned_cols=41 Identities=20% Similarity=0.221 Sum_probs=30.9
Q ss_pred EEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCCccccCC
Q 036520 7 VVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPKNIQRLP 48 (473)
Q Consensus 7 vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~ 48 (473)
|++...|+.|-+. ...+.+.|.++|++|.++.++....++.
T Consensus 2 illgvtGsiaa~k-a~~lir~L~~~g~~V~vv~T~~A~~fv~ 42 (181)
T TIGR00421 2 IVVAMTGASGVIY-GIRLLEVLKEAGVEVHLVISDWAKETIK 42 (181)
T ss_pred EEEEEECHHHHHH-HHHHHHHHHHCCCEEEEEECccHHHHHH
Confidence 5555555555444 4899999999999999999888776653
No 252
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=45.78 E-value=24 Score=33.49 Aligned_cols=41 Identities=20% Similarity=0.301 Sum_probs=32.2
Q ss_pred cEEEEecC-CCccChHHHHHHHHHHHhCCCeEEEEeCCCccc
Q 036520 5 LHVVMLPW-SAFGHLMPFFQLSIALAKSGVKVSFISTPKNIQ 45 (473)
Q Consensus 5 ~~vl~~~~-~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~ 45 (473)
||++|+.. |+-|=..-..++|-.++++|++|.+++.+...+
T Consensus 1 ~r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~ 42 (305)
T PF02374_consen 1 MRILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAHS 42 (305)
T ss_dssp -SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTH
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCcc
Confidence 56777766 566999999999999999999999998876543
No 253
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=45.78 E-value=33 Score=35.30 Aligned_cols=35 Identities=11% Similarity=0.207 Sum_probs=28.0
Q ss_pred HHHHHHHhCCCcEEEEcCCcchHHHHHHHcCCCeEEEe
Q 036520 107 PFKQFVAQQSVDWIIVDVMSHWAGKIAQEYHVPLLLFS 144 (473)
Q Consensus 107 ~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~ 144 (473)
++.+.+++.+||+||.+. ....+|+++|||++.++
T Consensus 353 el~~~i~~~~PdliiG~~---~er~~a~~lgiP~~~i~ 387 (519)
T PRK02910 353 EVEDAIAEAAPELVLGTQ---MERHSAKRLGIPCAVIS 387 (519)
T ss_pred HHHHHHHhcCCCEEEEcc---hHHHHHHHcCCCEEEec
Confidence 556677788999999886 34568999999998774
No 254
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=45.43 E-value=26 Score=34.99 Aligned_cols=35 Identities=17% Similarity=0.260 Sum_probs=28.8
Q ss_pred HHHHHHHhCCCcEEEEcCCcchHHHHHHHcCCCeEEEe
Q 036520 107 PFKQFVAQQSVDWIIVDVMSHWAGKIAQEYHVPLLLFS 144 (473)
Q Consensus 107 ~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~ 144 (473)
++.+++++.+||++|.... ...+|+++|||++.+.
T Consensus 360 e~~~~i~~~~pDliig~~~---~~~~a~k~giP~~~~~ 394 (421)
T cd01976 360 ELEEFVKRLKPDLIGSGIK---EKYVFQKMGIPFRQMH 394 (421)
T ss_pred HHHHHHHHhCCCEEEecCc---chhhhhhcCCCeEeCC
Confidence 5667788889999999864 5568999999998664
No 255
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=45.25 E-value=17 Score=31.61 Aligned_cols=42 Identities=14% Similarity=0.113 Sum_probs=34.0
Q ss_pred EEEEecCCCccChHHHHHHHHHHHh-CCCeEEEEeCCCccccCC
Q 036520 6 HVVMLPWSAFGHLMPFFQLSIALAK-SGVKVSFISTPKNIQRLP 48 (473)
Q Consensus 6 ~vl~~~~~~~gH~~p~l~la~~L~~-~Gh~Vt~~~~~~~~~~~~ 48 (473)
||++.-.|+.| .+=...+.++|.+ .||+|.++.++...+++.
T Consensus 3 ~IllgVTGsia-a~ka~~l~~~L~k~~g~~V~vv~T~~A~~fv~ 45 (185)
T PRK06029 3 RLIVGISGASG-AIYGVRLLQVLRDVGEIETHLVISQAARQTLA 45 (185)
T ss_pred EEEEEEECHHH-HHHHHHHHHHHHhhcCCeEEEEECHHHHHHHH
Confidence 58777777666 6679999999999 599999999888766554
No 256
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=45.25 E-value=37 Score=29.80 Aligned_cols=37 Identities=19% Similarity=0.244 Sum_probs=31.0
Q ss_pred ccEEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 036520 4 KLHVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFIST 40 (473)
Q Consensus 4 ~~~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~ 40 (473)
+++|.+-..++-|-.+.|+.=|++|.++|.+|.+..-
T Consensus 5 rLkIflG~apGVGKTy~ML~ea~~l~~~G~DVViG~v 41 (211)
T PF02702_consen 5 RLKIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYV 41 (211)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE-
T ss_pred cEEEEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 5789999999999999999999999999999997653
No 257
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=45.00 E-value=34 Score=35.18 Aligned_cols=36 Identities=14% Similarity=0.157 Sum_probs=28.8
Q ss_pred HHHHHHHhCCCcEEEEcCCcchHHHHHHHcCCCeEEEec
Q 036520 107 PFKQFVAQQSVDWIIVDVMSHWAGKIAQEYHVPLLLFSA 145 (473)
Q Consensus 107 ~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~ 145 (473)
++.+.+++.+||+||.+. ....+|+++|||++.++.
T Consensus 355 ei~~~i~~~~pdliiG~~---~er~~a~~lgip~~~i~~ 390 (511)
T TIGR01278 355 EVADAIAALEPELVLGTQ---MERHSAKRLDIPCGVISA 390 (511)
T ss_pred HHHHHHHhcCCCEEEECh---HHHHHHHHcCCCEEEecC
Confidence 566677788999999996 455678999999987744
No 258
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=44.77 E-value=34 Score=34.22 Aligned_cols=36 Identities=17% Similarity=0.400 Sum_probs=28.8
Q ss_pred hHHHHHHHhCCCcEEEEcCCcchHHHHHHHcCCCeEEEe
Q 036520 106 HPFKQFVAQQSVDWIIVDVMSHWAGKIAQEYHVPLLLFS 144 (473)
Q Consensus 106 ~~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~ 144 (473)
.++.+++++.+||++|.+.. ...+|+++|||++.+.
T Consensus 362 ~e~~~~l~~~~~dliiG~s~---~~~~a~~~~ip~~~~~ 397 (429)
T cd03466 362 FDIESYAKELKIDVLIGNSY---GRRIAEKLGIPLIRIG 397 (429)
T ss_pred HHHHHHHHhcCCCEEEECch---hHHHHHHcCCCEEEec
Confidence 45667777889999999963 4688999999998763
No 259
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=44.59 E-value=38 Score=33.30 Aligned_cols=49 Identities=8% Similarity=0.106 Sum_probs=34.3
Q ss_pred HHHHHHhhhhhHHHHHHHhCCCcEEEEcCCcc-------hHH---HHHHHcCCCeEEEe
Q 036520 96 YLKIAYDLLQHPFKQFVAQQSVDWIIVDVMSH-------WAG---KIAQEYHVPLLLFS 144 (473)
Q Consensus 96 ~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~-------~~~---~~A~~lgiP~v~~~ 144 (473)
++....+...+.+.+.+++.+||++|+-+-+. ||. .+.++++||.++-.
T Consensus 56 Yf~en~eea~~~i~~mv~k~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt~M 114 (431)
T TIGR01918 56 FFGENLEEAVARVLEMLKDKEPDIFIAGPAFNAGRYGVACGEICKVVQDKLNVPAVTSM 114 (431)
T ss_pred hhhhCHHHHHHHHHHHHHhcCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 44444555667888999999999999986331 222 24578999988643
No 260
>PLN02939 transferase, transferring glycosyl groups
Probab=44.59 E-value=39 Score=37.19 Aligned_cols=40 Identities=25% Similarity=0.175 Sum_probs=30.3
Q ss_pred CccEEEEecCC------CccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 036520 3 RKLHVVMLPWS------AFGHLMPFFQLSIALAKSGVKVSFISTPK 42 (473)
Q Consensus 3 ~~~~vl~~~~~------~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~ 42 (473)
++|||++++.- +.|=-.-.-.|.++|++.||+|.++++..
T Consensus 480 ~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y 525 (977)
T PLN02939 480 SGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKY 525 (977)
T ss_pred CCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 45999998752 12334456788999999999999999755
No 261
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=44.56 E-value=38 Score=33.32 Aligned_cols=49 Identities=6% Similarity=0.064 Sum_probs=34.5
Q ss_pred HHHHHHhhhhhHHHHHHHhCCCcEEEEcCCcc-------hHH---HHHHHcCCCeEEEe
Q 036520 96 YLKIAYDLLQHPFKQFVAQQSVDWIIVDVMSH-------WAG---KIAQEYHVPLLLFS 144 (473)
Q Consensus 96 ~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~-------~~~---~~A~~lgiP~v~~~ 144 (473)
++....+...+.+.+.+++.+||++|+-+-+. ||. .+.++++||.++-.
T Consensus 56 Yf~en~eea~~~i~~mv~k~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vtaM 114 (431)
T TIGR01917 56 FFGENLEEAKAKVLEMIKGANPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTAM 114 (431)
T ss_pred hhhhCHHHHHHHHHHHHHhcCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 44455556677888999999999999986331 222 24578999988643
No 262
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=44.54 E-value=37 Score=27.08 Aligned_cols=37 Identities=16% Similarity=0.144 Sum_probs=33.4
Q ss_pred EEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 036520 6 HVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPK 42 (473)
Q Consensus 6 ~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~ 42 (473)
||++.+.++-.|-.-..-++.-|...|++|.+.....
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~v 37 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQ 37 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCC
Confidence 5899999999999999999999999999999988643
No 263
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=43.98 E-value=65 Score=30.88 Aligned_cols=34 Identities=18% Similarity=0.144 Sum_probs=29.8
Q ss_pred ecCCCccChHHHHHHHHHHHhCCCeEEEEeCCCc
Q 036520 10 LPWSAFGHLMPFFQLSIALAKSGVKVSFISTPKN 43 (473)
Q Consensus 10 ~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~ 43 (473)
++.|+.|=.=-...|++.|.++|++|.+++-.+-
T Consensus 43 ltvGGTGKTP~v~~L~~~L~~~G~~~~IlSRGYg 76 (326)
T PF02606_consen 43 LTVGGTGKTPLVIWLARLLQARGYRPAILSRGYG 76 (326)
T ss_pred cccCCCCchHHHHHHHHHHHhcCCceEEEcCCCC
Confidence 5678889998999999999999999999986554
No 264
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=43.97 E-value=39 Score=32.22 Aligned_cols=34 Identities=6% Similarity=0.135 Sum_probs=26.1
Q ss_pred HHhhCCCcceeeeccCchhHHHHHhhCCceeccc
Q 036520 355 EILAHPSIGTSLFHAGWGSVIETLQFGHSLVVLP 388 (473)
Q Consensus 355 ~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P 388 (473)
.++..-.-+++|++|+..+..-|-..|+|.+.+-
T Consensus 87 ~~l~~~~pDlVi~d~~~~~~~aA~~~~iP~i~i~ 120 (321)
T TIGR00661 87 NIIREYNPDLIISDFEYSTVVAAKLLKIPVICIS 120 (321)
T ss_pred HHHHhcCCCEEEECCchHHHHHHHhcCCCEEEEe
Confidence 3333333344999999999999999999999664
No 265
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=43.57 E-value=36 Score=34.08 Aligned_cols=36 Identities=17% Similarity=0.357 Sum_probs=28.5
Q ss_pred hHHHHHHHhCCCcEEEEcCCcchHHHHHHHcCCCeEEEe
Q 036520 106 HPFKQFVAQQSVDWIIVDVMSHWAGKIAQEYHVPLLLFS 144 (473)
Q Consensus 106 ~~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~ 144 (473)
.++.+++++.+||+||.+.. ...+|+++|+|++.+.
T Consensus 361 ~el~~~i~~~~pdliig~~~---~~~~a~~~~ip~i~~~ 396 (428)
T cd01965 361 WDLESLAKEEPVDLLIGNSH---GRYLARDLGIPLVRVG 396 (428)
T ss_pred HHHHHHhhccCCCEEEECch---hHHHHHhcCCCEEEec
Confidence 34566778889999999963 4678999999998763
No 266
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=43.45 E-value=60 Score=31.56 Aligned_cols=88 Identities=14% Similarity=0.117 Sum_probs=56.5
Q ss_pred ccCCHHHHHHHHHHHhcCCCCEEEEEcCCCCCCCcc-ccCc---hhhhhhcCCCc--eEEecccch---HHHhhCCCcce
Q 036520 294 CKLSKDQVYEIAYGLELSGLPFLWALRKPEWATDDV-DALP---LGFADTIRGKG--IVSIGWAPQ---LEILAHPSIGT 364 (473)
Q Consensus 294 ~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~-~~~p---~~~~~~~~~~n--v~~~~~~pq---~~ll~~~~~~~ 364 (473)
+..+...+..+++++++.+.++.+.+..+.... .. ..++ ..-......++ +.+.+|+|| ..||-.|++
T Consensus 190 F~Ye~~~l~~ll~~~~~~~~pv~llvp~g~~~~-~~~~~~~~~~~~~g~~~~~g~l~l~~lPF~~Q~~yD~LLw~cD~-- 266 (374)
T PF10093_consen 190 FCYENAALASLLDAWAASPKPVHLLVPEGRALN-SLAAWLGDALLQAGDSWQRGNLTLHVLPFVPQDDYDRLLWACDF-- 266 (374)
T ss_pred EeCCchHHHHHHHHHhcCCCCeEEEecCCccHH-HHHHHhccccccCccccccCCeEEEECCCCCHHHHHHHHHhCcc--
Confidence 345667788888888888888887776653220 00 0000 00001112334 556799999 789988887
Q ss_pred eeeccCchhHHHHHhhCCcee
Q 036520 365 SLFHAGWGSVIETLQFGHSLV 385 (473)
Q Consensus 365 ~ItHGG~~s~~eal~~GvP~l 385 (473)
-+=. |--|+.-|.-+|+|.|
T Consensus 267 NfVR-GEDSfVRAqwAgkPFv 286 (374)
T PF10093_consen 267 NFVR-GEDSFVRAQWAGKPFV 286 (374)
T ss_pred ceEe-cchHHHHHHHhCCCce
Confidence 3333 6779999999999987
No 267
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=43.21 E-value=1.7e+02 Score=25.44 Aligned_cols=107 Identities=12% Similarity=0.073 Sum_probs=0.0
Q ss_pred cEEEEecCCCccChHHHHHHHHHHHhCCC--eEEEEeCCCccccCCCCCCCcccCCCeEEEEecCCccccccccCCCCCC
Q 036520 5 LHVVMLPWSAFGHLMPFFQLSIALAKSGV--KVSFISTPKNIQRLPKPAPESEVAALINFVEFPLPASAALDDKLLLPEG 82 (473)
Q Consensus 5 ~~vl~~~~~~~gH~~p~l~la~~L~~~Gh--~Vt~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~l~~~ 82 (473)
|||+++..+..+-+. .+.+.+.+.++ +|.++.+.......... ....++.+..++. ..+..
T Consensus 1 ~riail~sg~gs~~~---~ll~~~~~~~l~~~I~~vi~~~~~~~~~~~----A~~~gip~~~~~~---------~~~~~- 63 (190)
T TIGR00639 1 KRIVVLISGNGSNLQ---AIIDACKEGKIPASVVLVISNKPDAYGLER----AAQAGIPTFVLSL---------KDFPS- 63 (190)
T ss_pred CeEEEEEcCCChhHH---HHHHHHHcCCCCceEEEEEECCccchHHHH----HHHcCCCEEEECc---------cccCc-
Q ss_pred CccCCCCChhhHHHHHHHHhhhhhHHHHHHHhCCCcEEEEcCCc-chHHHHHHHcCCCeEEEecc
Q 036520 83 AEATVDIPSENIQYLKIAYDLLQHPFKQFVAQQSVDWIIVDVMS-HWAGKIAQEYHVPLLLFSAF 146 (473)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~-~~~~~~A~~lgiP~v~~~~~ 146 (473)
.....+.+.+.+++.+||++|+-.+. .....+-......++-++++
T Consensus 64 ------------------~~~~~~~~~~~l~~~~~D~iv~~~~~~il~~~~l~~~~~~~iNiHps 110 (190)
T TIGR00639 64 ------------------REAFDQAIIEELRAHEVDLVVLAGFMRILGPTFLSRFAGRILNIHPS 110 (190)
T ss_pred ------------------hhhhhHHHHHHHHhcCCCEEEEeCcchhCCHHHHhhccCCEEEEeCC
No 268
>PRK04940 hypothetical protein; Provisional
Probab=43.19 E-value=62 Score=27.91 Aligned_cols=32 Identities=16% Similarity=0.159 Sum_probs=26.1
Q ss_pred CCcEEEEcCCc-chHHHHHHHcCCCeEEEecch
Q 036520 116 SVDWIIVDVMS-HWAGKIAQEYHVPLLLFSAFS 147 (473)
Q Consensus 116 ~pD~vI~D~~~-~~~~~~A~~lgiP~v~~~~~~ 147 (473)
+++++|...+- ++|..+|+++|+|.|.+.|+.
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g~~aVLiNPAv 92 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCGIRQVIFNPNL 92 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHCCCEEEECCCC
Confidence 46788877655 899999999999999986643
No 269
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=42.60 E-value=74 Score=26.38 Aligned_cols=26 Identities=15% Similarity=0.098 Sum_probs=20.8
Q ss_pred eeeeccCc------hhHHHHHhhCCceecccc
Q 036520 364 TSLFHAGW------GSVIETLQFGHSLVVLPL 389 (473)
Q Consensus 364 ~~ItHGG~------~s~~eal~~GvP~l~~P~ 389 (473)
++++|+|- +.+.+|...++|+|++.-
T Consensus 62 v~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~~ 93 (155)
T cd07035 62 VVLVTSGPGLTNAVTGLANAYLDSIPLLVITG 93 (155)
T ss_pred EEEEcCCCcHHHHHHHHHHHHhhCCCEEEEeC
Confidence 48888664 477889999999999964
No 270
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=42.12 E-value=40 Score=33.74 Aligned_cols=36 Identities=17% Similarity=0.274 Sum_probs=27.9
Q ss_pred HHHHHHHhCCCcEEEEcCCcchHHHHHHHcCCCeEEEec
Q 036520 107 PFKQFVAQQSVDWIIVDVMSHWAGKIAQEYHVPLLLFSA 145 (473)
Q Consensus 107 ~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~ 145 (473)
++.+++++.+||++|.+. ....+|+++|+|++.++.
T Consensus 361 e~~~~i~~~~pdliig~~---~~~~~a~~~gip~~~~~~ 396 (430)
T cd01981 361 EVGDMIARTEPELIFGTQ---MERHIGKRLDIPCAVISA 396 (430)
T ss_pred HHHHHHHhhCCCEEEecc---hhhHHHHHcCCCEEEEeC
Confidence 356677778999999996 344568999999988744
No 271
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=41.88 E-value=36 Score=32.11 Aligned_cols=34 Identities=18% Similarity=0.221 Sum_probs=24.8
Q ss_pred ccEEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 036520 4 KLHVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPK 42 (473)
Q Consensus 4 ~~~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~ 42 (473)
+|||+|+-.+.. ....-++|..+||+|.-+.+..
T Consensus 1 ~mkivF~GTp~f-----a~~~L~~L~~~~~eivaV~Tqp 34 (307)
T COG0223 1 MMRIVFFGTPEF-----AVPSLEALIEAGHEIVAVVTQP 34 (307)
T ss_pred CcEEEEEcCchh-----hHHHHHHHHhCCCceEEEEeCC
Confidence 478998877654 4566778888999999665544
No 272
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=41.84 E-value=50 Score=31.50 Aligned_cols=34 Identities=26% Similarity=0.263 Sum_probs=30.2
Q ss_pred ecCCCccChHHHHHHHHHHHhCCCeEEEEeCCCc
Q 036520 10 LPWSAFGHLMPFFQLSIALAKSGVKVSFISTPKN 43 (473)
Q Consensus 10 ~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~ 43 (473)
++.|+.|-.--.+.||++|.+||..|-+++-.+.
T Consensus 55 ltvGGtGKTP~vi~la~~l~~rG~~~gvvSRGYg 88 (336)
T COG1663 55 LTVGGTGKTPVVIWLAEALQARGVRVGVVSRGYG 88 (336)
T ss_pred EEECCCCcCHHHHHHHHHHHhcCCeeEEEecCcC
Confidence 6778999999999999999999999999986553
No 273
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=41.84 E-value=26 Score=31.81 Aligned_cols=43 Identities=16% Similarity=0.030 Sum_probs=31.5
Q ss_pred EEEecCCCccChHHHHHHHHHHHhC--CCeEEEEeCCCccccCCC
Q 036520 7 VVMLPWSAFGHLMPFFQLSIALAKS--GVKVSFISTPKNIQRLPK 49 (473)
Q Consensus 7 vl~~~~~~~gH~~p~l~la~~L~~~--Gh~Vt~~~~~~~~~~~~~ 49 (473)
|++.-.|+.+=+.-.+.+.+.|.++ ||+|.++.++...+.+..
T Consensus 2 i~~~itGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a~~~i~~ 46 (234)
T TIGR02700 2 IGWGITGAGHLLVESFQVMKELKREIEELRVSTFVSRAGEEVVRM 46 (234)
T ss_pred eEEEEeCccHhHHHHHHHHHHHHhhcCCCeEEEEEChhHHhHHhh
Confidence 4444443334447899999999999 999999998876665544
No 274
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=41.71 E-value=20 Score=30.10 Aligned_cols=32 Identities=19% Similarity=0.369 Sum_probs=24.1
Q ss_pred EEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 036520 6 HVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPK 42 (473)
Q Consensus 6 ~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~ 42 (473)
||.++-.|..|+ .+|..|+.+||+|++.+...
T Consensus 1 KI~ViGaG~~G~-----AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGT-----ALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHH-----HHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHH-----HHHHHHHHcCCEEEEEeccH
Confidence 355555555554 78999999999999998764
No 275
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=41.58 E-value=52 Score=28.86 Aligned_cols=40 Identities=15% Similarity=-0.121 Sum_probs=35.7
Q ss_pred ccEEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCCc
Q 036520 4 KLHVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPKN 43 (473)
Q Consensus 4 ~~~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~ 43 (473)
+.+|++.+.++-.|-....-++.-|..+|++|+++....-
T Consensus 84 ~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp 123 (197)
T TIGR02370 84 LGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVP 123 (197)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCC
Confidence 3589999999999999999999999999999999886543
No 276
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=41.39 E-value=41 Score=34.52 Aligned_cols=34 Identities=24% Similarity=0.482 Sum_probs=26.1
Q ss_pred HHHHHHhCCCcEEEEcCCcchHHHHHHHcCCCeEEEe
Q 036520 108 FKQFVAQQSVDWIIVDVMSHWAGKIAQEYHVPLLLFS 144 (473)
Q Consensus 108 l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~ 144 (473)
+++++++.+||++|.+. .+..+|+++|||++.+.
T Consensus 429 l~~~l~~~~~DlliG~s---~~k~~a~~~giPlir~g 462 (515)
T TIGR01286 429 LRSLVFTEPVDFLIGNS---YGKYIQRDTLVPLIRIG 462 (515)
T ss_pred HHHHHhhcCCCEEEECc---hHHHHHHHcCCCEEEec
Confidence 34555666899999885 35678999999998763
No 277
>COG2210 Peroxiredoxin family protein [General function prediction only]
Probab=40.96 E-value=55 Score=26.67 Aligned_cols=33 Identities=15% Similarity=0.088 Sum_probs=26.9
Q ss_pred ecCCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 036520 10 LPWSAFGHLMPFFQLSIALAKSGVKVSFISTPK 42 (473)
Q Consensus 10 ~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~ 42 (473)
+..+..--+++..-++...+..|++|+++.+--
T Consensus 9 l~SG~~dk~~~a~iias~A~A~G~EV~VF~Tfw 41 (137)
T COG2210 9 LASGTLDKAYAALIIASGAAAMGYEVTVFFTFW 41 (137)
T ss_pred EeCCCHHHHHHHHHHHHHHHHcCCeEEEEEeHH
Confidence 344566888999999999999999999877533
No 278
>PRK06270 homoserine dehydrogenase; Provisional
Probab=40.81 E-value=97 Score=29.93 Aligned_cols=58 Identities=16% Similarity=0.193 Sum_probs=34.6
Q ss_pred chHHHhhCCCcceeee------ccC---chhHHHHHhhCCceec---cccccccccceeeeeecceEEEE
Q 036520 352 PQLEILAHPSIGTSLF------HAG---WGSVIETLQFGHSLVV---LPLIIDQPLNARLLVDKDLAVQV 409 (473)
Q Consensus 352 pq~~ll~~~~~~~~It------HGG---~~s~~eal~~GvP~l~---~P~~~DQ~~na~~v~~~G~G~~l 409 (473)
...+++..+++.+||- |+| ..-+.+|+.+|+++|+ -|+...-..-....++.|+.+..
T Consensus 80 d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~~~~ 149 (341)
T PRK06270 80 SGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVRFRY 149 (341)
T ss_pred CHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCEEEE
Confidence 4567787666655665 543 4456899999999999 47643222222233344555443
No 279
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=40.71 E-value=1.3e+02 Score=28.39 Aligned_cols=111 Identities=16% Similarity=0.096 Sum_probs=59.3
Q ss_pred eEEeeccCCCCCCCCCCCCchhhhhccccCCCCCcEEEEeecCcccCCHHHHHHHHHHHhcCCCCEEEEEcCCCCCCCcc
Q 036520 250 VIPVGLLTPEPNSAKGRDHQISKIFQWLDEQKPRSVVFVGFGSECKLSKDQVYEIAYGLELSGLPFLWALRKPEWATDDV 329 (473)
Q Consensus 250 ~~~vGp~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~ 329 (473)
-.++|....++... ...-+++.....+..-+++-.-........+...+..+.+++++.|..+.+-++.+...
T Consensus 98 drf~~~~~v~p~~~---~~a~~E~er~v~~~gf~g~~l~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~~~~---- 170 (293)
T COG2159 98 DRFVGFARVDPRDP---EAAAEELERRVRELGFVGVKLHPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGAGPGG---- 170 (293)
T ss_pred cceeeeeeeCCCch---HHHHHHHHHHHHhcCceEEEecccccCCCCCChHHHHHHHHHHHcCCCEEEEeCCCCCC----
Confidence 55666666554432 11234566666554322222222222222345667889999999999999965543211
Q ss_pred ccCchhhhhhcCCCceEEecccchHHHhhCCCcceeeeccC--chhHHHH
Q 036520 330 DALPLGFADTIRGKGIVSIGWAPQLEILAHPSIGTSLFHAG--WGSVIET 377 (473)
Q Consensus 330 ~~~p~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~ItHGG--~~s~~ea 377 (473)
..+.. . ...++.=..-....|++++++.|+| ..=..|+
T Consensus 171 ~~~~~---------~-~~~p~~~~~va~~fP~l~IVl~H~G~~~p~~~~a 210 (293)
T COG2159 171 AGLEK---------G-HSDPLYLDDVARKFPELKIVLGHMGEDYPWELEA 210 (293)
T ss_pred ccccc---------C-CCCchHHHHHHHHCCCCcEEEEecCCCCchhHHH
Confidence 00110 0 0011111344556789999999999 4444444
No 280
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=40.12 E-value=47 Score=33.32 Aligned_cols=34 Identities=18% Similarity=0.341 Sum_probs=28.2
Q ss_pred HHHHHHHhCCCcEEEEcCCcchHHHHHHHcCCCeEEE
Q 036520 107 PFKQFVAQQSVDWIIVDVMSHWAGKIAQEYHVPLLLF 143 (473)
Q Consensus 107 ~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~ 143 (473)
++.+++++.+||++|... .+..+|+++|||++.+
T Consensus 364 ~l~~~i~~~~~dliig~s---~~k~~A~~l~ip~ir~ 397 (432)
T TIGR01285 364 DLEDLACAAGADLLITNS---HGRALAQRLALPLVRA 397 (432)
T ss_pred HHHHHHhhcCCCEEEECc---chHHHHHHcCCCEEEe
Confidence 567788888999999885 3467899999999876
No 281
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=40.10 E-value=35 Score=29.67 Aligned_cols=92 Identities=18% Similarity=0.304 Sum_probs=44.2
Q ss_pred CccChHHHHHHHHHHHhC--CCeEEEEeCCC-ccccCCCCCCCcccCCCeEEEEecCCccccccccCCCCCCCccCCCCC
Q 036520 14 AFGHLMPFFQLSIALAKS--GVKVSFISTPK-NIQRLPKPAPESEVAALINFVEFPLPASAALDDKLLLPEGAEATVDIP 90 (473)
Q Consensus 14 ~~gH~~p~l~la~~L~~~--Gh~Vt~~~~~~-~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~ 90 (473)
+-|-+..+.+|+++|.++ |+.|.+-++.. ..+.+.+. .++.+....+|+ +.
T Consensus 30 SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~-----~~~~v~~~~~P~--------------------D~- 83 (186)
T PF04413_consen 30 SVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKL-----LPDRVDVQYLPL--------------------DF- 83 (186)
T ss_dssp SHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG------GGG-SEEE-----------------------SS-
T ss_pred CHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHh-----CCCCeEEEEeCc--------------------cC-
Confidence 569999999999999987 88888766532 22222221 112233333331 00
Q ss_pred hhhHHHHHHHHhhhhhHHHHHHHhCCCcEEEEcCCcchHH--HHHHHcCCCeEEEec
Q 036520 91 SENIQYLKIAYDLLQHPFKQFVAQQSVDWIIVDVMSHWAG--KIAQEYHVPLLLFSA 145 (473)
Q Consensus 91 ~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~~~~--~~A~~lgiP~v~~~~ 145 (473)
......+++.++||++|.---..|-. ..|++.|||.+.+..
T Consensus 84 --------------~~~~~rfl~~~~P~~~i~~EtElWPnll~~a~~~~ip~~LvNa 126 (186)
T PF04413_consen 84 --------------PWAVRRFLDHWRPDLLIWVETELWPNLLREAKRRGIPVVLVNA 126 (186)
T ss_dssp --------------HHHHHHHHHHH--SEEEEES----HHHHHH-----S-EEEEEE
T ss_pred --------------HHHHHHHHHHhCCCEEEEEccccCHHHHHHHhhcCCCEEEEee
Confidence 11345677888999776554443333 468899999998754
No 282
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=39.95 E-value=48 Score=28.50 Aligned_cols=35 Identities=11% Similarity=0.126 Sum_probs=24.0
Q ss_pred HHHHhCCCcEEEEcCCcch--HHHHHHHcCCCeEEEe
Q 036520 110 QFVAQQSVDWIIVDVMSHW--AGKIAQEYHVPLLLFS 144 (473)
Q Consensus 110 ~ll~~~~pD~vI~D~~~~~--~~~~A~~lgiP~v~~~ 144 (473)
+.+...+||+||....... ....-+..|||++.+.
T Consensus 63 E~ll~l~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~ 99 (186)
T cd01141 63 ELIVALKPDLVILYGGFQAQTILDKLEQLGIPVLYVN 99 (186)
T ss_pred HHHhccCCCEEEEecCCCchhHHHHHHHcCCCEEEeC
Confidence 4445679999998654322 3344578999998874
No 283
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=39.80 E-value=1.7e+02 Score=25.15 Aligned_cols=104 Identities=15% Similarity=0.138 Sum_probs=58.3
Q ss_pred CccEEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCC--cccCCCeEEEEecCCccccccccCCCC
Q 036520 3 RKLHVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPKNIQRLPKPAPE--SEVAALINFVEFPLPASAALDDKLLLP 80 (473)
Q Consensus 3 ~~~~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~--~~~~~~i~~~~i~~~~~~~~~~~~~l~ 80 (473)
.+=-|-+++..+.|=....+.+|-+-+-+|.+|.++..=.... ..+.. -..-+++.+.... .+..
T Consensus 20 ~~Gli~VYtGdGKGKTTAAlGlalRAaG~G~rV~iiQFlKg~~---~~GE~~~l~~~~~v~~~~~g----------~~~~ 86 (178)
T PRK07414 20 IEGLVQVFTSSQRNFFTSVMAQALRIAGQGTPVLIVQFLKGGI---QQGPDRPIQLGQNLDWVRCD----------LPRC 86 (178)
T ss_pred CCCEEEEEeCCCCCchHHHHHHHHHHhcCCCEEEEEEEecCCC---cchHHHHHHhCCCcEEEECC----------CCCe
Confidence 3445778888889988888888877777888888875311110 01100 0111467776665 2111
Q ss_pred CCCccCCCCChhhHHHHHHHHhhhhhHHHHHHHhCCCcEEEEcCCc
Q 036520 81 EGAEATVDIPSENIQYLKIAYDLLQHPFKQFVAQQSVDWIIVDVMS 126 (473)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~ 126 (473)
.. ..+.... -....+...+...+.+.+..+|+||-|-..
T Consensus 87 ~~---~~~~~~~----~~~~~~~~~~~a~~~l~~~~~dlvVLDEi~ 125 (178)
T PRK07414 87 LD---TPHLDES----EKKALQELWQYTQAVVDEGRYSLVVLDELS 125 (178)
T ss_pred ee---CCCcCHH----HHHHHHHHHHHHHHHHhCCCCCEEEEehhH
Confidence 10 0111101 113344455566677788899999999644
No 284
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=39.37 E-value=43 Score=33.85 Aligned_cols=38 Identities=26% Similarity=0.372 Sum_probs=32.2
Q ss_pred cEEEEecCCCccChHH------------HHHHHHHHHhCCCeEEEEeCCC
Q 036520 5 LHVVMLPWSAFGHLMP------------FFQLSIALAKSGVKVSFISTPK 42 (473)
Q Consensus 5 ~~vl~~~~~~~gH~~p------------~l~la~~L~~~Gh~Vt~~~~~~ 42 (473)
.||++...|+.=.+.| -..||+++..+|++||+++.+.
T Consensus 257 kkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~ 306 (475)
T PRK13982 257 RRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPV 306 (475)
T ss_pred CEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCc
Confidence 4899988888877776 4689999999999999999765
No 285
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=39.32 E-value=3e+02 Score=25.42 Aligned_cols=35 Identities=14% Similarity=0.195 Sum_probs=27.5
Q ss_pred ccEEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 036520 4 KLHVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTP 41 (473)
Q Consensus 4 ~~~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 41 (473)
+|||+++.+++...-. .+..+|.++|.+|.++...
T Consensus 3 ~~kvaVl~~pG~n~d~---e~~~Al~~aG~~v~~v~~~ 37 (261)
T PRK01175 3 SIRVAVLRMEGTNCED---ETVKAFRRLGVEPEYVHIN 37 (261)
T ss_pred CCEEEEEeCCCCCCHH---HHHHHHHHCCCcEEEEeec
Confidence 3689999998886554 5578898899999988754
No 286
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=39.20 E-value=66 Score=29.77 Aligned_cols=53 Identities=15% Similarity=0.169 Sum_probs=37.5
Q ss_pred CCcceeeeccCchhHHHHHhh-----CCceeccccccccccceeeeeecceEEEEecCCCCCcCHHHHHHHHHHHhcC
Q 036520 360 PSIGTSLFHAGWGSVIETLQF-----GHSLVVLPLIIDQPLNARLLVDKDLAVQVERKDDGSFTRDGIAKALRLATVS 432 (473)
Q Consensus 360 ~~~~~~ItHGG~~s~~eal~~-----GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~t~~~l~~~i~~ll~~ 432 (473)
+++ +|+=||-||++.++.. .+|++.+-..+ .+|..- .++.+++.+++.++++|
T Consensus 40 ~D~--vi~lGGDGT~L~a~~~~~~~~~~pilgIn~~G------------~lGFL~------~~~~~~~~~~l~~i~~g 97 (264)
T PRK03501 40 ANI--IVSIGGDGTFLQAVRKTGFREDCLYAGISTKD------------QLGFYC------DFHIDDLDKMIQAITKE 97 (264)
T ss_pred ccE--EEEECCcHHHHHHHHHhcccCCCeEEeEecCC------------CCeEcc------cCCHHHHHHHHHHHHcC
Confidence 455 9999999999999874 45665554411 233321 45788999999999984
No 287
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=39.01 E-value=1.4e+02 Score=30.55 Aligned_cols=31 Identities=39% Similarity=0.427 Sum_probs=24.5
Q ss_pred cEEEEecCCCccChHHHHHHHHHHHhC--CCeEEEEeC
Q 036520 5 LHVVMLPWSAFGHLMPFFQLSIALAKS--GVKVSFIST 40 (473)
Q Consensus 5 ~~vl~~~~~~~gH~~p~l~la~~L~~~--Gh~Vt~~~~ 40 (473)
||||++-.++..| +|++.|++. |++|.++..
T Consensus 1 mkVLviG~Ggreh-----al~~~l~~s~~g~~v~~~~g 33 (486)
T PRK05784 1 MKVLLVGDGAREH-----ALAEALEKSTKGYKVYALSS 33 (486)
T ss_pred CEEEEECCchhHH-----HHHHHHHhCCCCCEEEEEEC
Confidence 6899988888777 578888876 898887754
No 288
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=38.98 E-value=3.3e+02 Score=25.51 Aligned_cols=73 Identities=10% Similarity=0.015 Sum_probs=48.0
Q ss_pred eeeccCchhHHHHHhhCCceecccccc--ccccceeeeeecceEEEEecCCCCCcCHHHHHHHHHHHhcCcchHHHHHHH
Q 036520 365 SLFHAGWGSVIETLQFGHSLVVLPLII--DQPLNARLLVDKDLAVQVERKDDGSFTRDGIAKALRLATVSEEGEKLRVRA 442 (473)
Q Consensus 365 ~ItHGG~~s~~eal~~GvP~l~~P~~~--DQ~~na~~v~~~G~G~~l~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~a 442 (473)
.=.+.|.+.+..|+.+|+..-++-++. +..+-.-.+.+.-+- +.. .-|.++|.+.+.++ + ..-|-+..
T Consensus 198 LP~~rG~~~~~~ai~~G~~~tG~TvH~v~~~~D~G~Ii~Q~~v~--I~~----~dt~~~L~~r~~~~-E---~~~~~~ai 267 (286)
T PRK13011 198 LPGFKGAKPYHQAYERGVKLIGATAHYVTDDLDEGPIIEQDVER--VDH----AYSPEDLVAKGRDV-E---CLTLARAV 267 (286)
T ss_pred CCCCCCCcHHHHHHHCCCCeEEEEEEEEcCCCcCCCcEEEEEEE--cCC----CCCHHHHHHHHHHH-H---HHHHHHHH
Confidence 344568899999999999998887653 555555555443332 333 34889999998874 4 35565555
Q ss_pred HHHHH
Q 036520 443 REAAN 447 (473)
Q Consensus 443 ~~~~~ 447 (473)
+.+..
T Consensus 268 ~~~~~ 272 (286)
T PRK13011 268 KAHIE 272 (286)
T ss_pred HHHHh
Confidence 55543
No 289
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=38.88 E-value=47 Score=30.16 Aligned_cols=41 Identities=17% Similarity=0.069 Sum_probs=25.8
Q ss_pred CCccEEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 036520 2 ARKLHVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPK 42 (473)
Q Consensus 2 ~~~~~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~ 42 (473)
...++|+++...---=..-+-.....|+++||+|++++-..
T Consensus 8 ~~~~~vL~v~aHPDDe~~g~ggtla~~~~~G~~V~v~~lT~ 48 (237)
T COG2120 8 LDPLRVLVVFAHPDDEEIGCGGTLAKLAARGVEVTVVCLTL 48 (237)
T ss_pred ccCCcEEEEecCCcchhhccHHHHHHHHHCCCeEEEEEccC
Confidence 44567766544322223445566677789999999988543
No 290
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=38.83 E-value=1e+02 Score=32.19 Aligned_cols=27 Identities=15% Similarity=0.278 Sum_probs=22.0
Q ss_pred cceeeeccCc------hhHHHHHhhCCceeccc
Q 036520 362 IGTSLFHAGW------GSVIETLQFGHSLVVLP 388 (473)
Q Consensus 362 ~~~~ItHGG~------~s~~eal~~GvP~l~~P 388 (473)
.+++++|.|- +.+.+|...++|||++.
T Consensus 67 ~gv~~~t~GpG~~n~~~gla~A~~~~~Pvl~i~ 99 (563)
T PRK08527 67 VGVAIVTSGPGFTNAVTGLATAYMDSIPLVLIS 99 (563)
T ss_pred CEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 4448888884 47889999999999984
No 291
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=38.48 E-value=56 Score=26.40 Aligned_cols=38 Identities=18% Similarity=0.265 Sum_probs=24.3
Q ss_pred cEEEEe-cCCCccC--hHHHHHHHHHHHhCCCeE-EEEeCCC
Q 036520 5 LHVVML-PWSAFGH--LMPFFQLSIALAKSGVKV-SFISTPK 42 (473)
Q Consensus 5 ~~vl~~-~~~~~gH--~~p~l~la~~L~~~Gh~V-t~~~~~~ 42 (473)
||++|+ ..+-+|+ ..-.+.+|+.+...||+| +++-..+
T Consensus 1 m~~~iv~~~~Py~~~~~~~al~~A~aa~~~gh~v~~vFf~~D 42 (128)
T PRK00207 1 MRYAIAVTGPAYGTQQASSAYQFAQALLAEGHELVSVFFYQD 42 (128)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEEehH
Confidence 456553 3333444 456888999999999995 5544333
No 292
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=38.45 E-value=63 Score=32.75 Aligned_cols=53 Identities=13% Similarity=0.156 Sum_probs=37.5
Q ss_pred CCCcceeeeccCchhHHHHHhh----CCceeccccccccccceeeeeecceEEEEecCCCCCcCHHHHHHHHHHHhcC
Q 036520 359 HPSIGTSLFHAGWGSVIETLQF----GHSLVVLPLIIDQPLNARLLVDKDLAVQVERKDDGSFTRDGIAKALRLATVS 432 (473)
Q Consensus 359 ~~~~~~~ItHGG~~s~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~t~~~l~~~i~~ll~~ 432 (473)
.+++ +|+=||-||++.|... ++|++++- .- -+|... .++.+++.++|.++++|
T Consensus 262 ~~Dl--VIsiGGDGTlL~Aar~~~~~~iPILGIN--------~G-----~LGFLt------~i~~~e~~~~Le~il~G 318 (508)
T PLN02935 262 KVDL--VITLGGDGTVLWAASMFKGPVPPVVPFS--------MG-----SLGFMT------PFHSEQYRDCLDAILKG 318 (508)
T ss_pred CCCE--EEEECCcHHHHHHHHHhccCCCcEEEEe--------CC-----Ccceec------ccCHHHHHHHHHHHHcC
Confidence 4555 9999999999999764 45666542 11 134322 45789999999999984
No 293
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=38.44 E-value=56 Score=29.21 Aligned_cols=35 Identities=23% Similarity=0.324 Sum_probs=30.0
Q ss_pred EEEecCC--CccChHHHHHHHHHHHhCCCeEEEEeCC
Q 036520 7 VVMLPWS--AFGHLMPFFQLSIALAKSGVKVSFISTP 41 (473)
Q Consensus 7 vl~~~~~--~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 41 (473)
|.+++++ +-|-......|+..|+.+|+.|.++-.+
T Consensus 4 iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~D 40 (272)
T COG2894 4 IIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFD 40 (272)
T ss_pred EEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecC
Confidence 7777775 5689999999999999999999988655
No 294
>PHA02754 hypothetical protein; Provisional
Probab=38.36 E-value=55 Score=21.91 Aligned_cols=26 Identities=12% Similarity=0.233 Sum_probs=19.7
Q ss_pred HHHHHhcCcchHHHHHHHHHHHHHhccCC
Q 036520 425 ALRLATVSEEGEKLRVRAREAANTFNDKK 453 (473)
Q Consensus 425 ~i~~ll~~~~~~~~~~~a~~~~~~~~~~~ 453 (473)
.|.+++. +..|++.+++++..+.+.|
T Consensus 6 Ei~k~i~---eK~Fke~MRelkD~LSe~G 31 (67)
T PHA02754 6 EIPKAIM---EKDFKEAMRELKDILSEAG 31 (67)
T ss_pred HHHHHHH---HhHHHHHHHHHHHHHhhCc
Confidence 3445555 6789999999999987654
No 295
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=38.09 E-value=30 Score=29.84 Aligned_cols=42 Identities=17% Similarity=0.183 Sum_probs=31.7
Q ss_pred EEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCCccccCC
Q 036520 6 HVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPKNIQRLP 48 (473)
Q Consensus 6 ~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~ 48 (473)
||++.-.++. ...-...+.+.|.++|++|.++.++....++.
T Consensus 2 ~I~lgvtGs~-~a~~~~~ll~~L~~~g~~V~vi~T~~A~~fi~ 43 (177)
T TIGR02113 2 KILLAVTGSI-AAYKAADLTSQLTKLGYDVTVLMTQAATQFIT 43 (177)
T ss_pred EEEEEEcCHH-HHHHHHHHHHHHHHCCCEEEEEEChHHHhhcc
Confidence 5666655544 45566799999999999999999887666554
No 296
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=38.01 E-value=31 Score=34.09 Aligned_cols=45 Identities=16% Similarity=0.124 Sum_probs=35.4
Q ss_pred CccEEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCCccccCC
Q 036520 3 RKLHVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPKNIQRLP 48 (473)
Q Consensus 3 ~~~~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~ 48 (473)
+++||++...|+. ..+-...+.+.|.+.|++|.++.++....++.
T Consensus 5 ~~k~IllgvTGsi-aa~k~~~lv~~L~~~g~~V~vv~T~~A~~fi~ 49 (399)
T PRK05579 5 AGKRIVLGVSGGI-AAYKALELVRRLRKAGADVRVVMTEAAKKFVT 49 (399)
T ss_pred CCCeEEEEEeCHH-HHHHHHHHHHHHHhCCCEEEEEECHhHHHHHh
Confidence 4457888766655 56678999999999999999999887666554
No 297
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=37.99 E-value=1.4e+02 Score=27.94 Aligned_cols=36 Identities=11% Similarity=-0.020 Sum_probs=22.2
Q ss_pred CCccEEEEecCCCccChHHHHHHHHHHHh--CCCeEEEEeC
Q 036520 2 ARKLHVVMLPWSAFGHLMPFFQLSIALAK--SGVKVSFIST 40 (473)
Q Consensus 2 ~~~~~vl~~~~~~~gH~~p~l~la~~L~~--~Gh~Vt~~~~ 40 (473)
.++|||+++.++..+.+. .|.++... .+++|.++.+
T Consensus 87 ~~~~ri~vl~Sg~g~nl~---al~~~~~~~~~~~~i~~vis 124 (286)
T PRK13011 87 AARPKVLIMVSKFDHCLN---DLLYRWRIGELPMDIVGVVS 124 (286)
T ss_pred ccCceEEEEEcCCcccHH---HHHHHHHcCCCCcEEEEEEE
Confidence 467899999888533333 33333333 3689987654
No 298
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=37.97 E-value=55 Score=32.84 Aligned_cols=35 Identities=23% Similarity=0.491 Sum_probs=27.0
Q ss_pred HHHHHHhCCCcEEEEcCCcchHHHHHHHcCCCeEEEec
Q 036520 108 FKQFVAQQSVDWIIVDVMSHWAGKIAQEYHVPLLLFSA 145 (473)
Q Consensus 108 l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~ 145 (473)
+.+.++..+||++|... ....+|+++|||++.+..
T Consensus 369 ~~~~i~~~~pDliiG~s---~~~~~a~~~gip~v~~~~ 403 (435)
T cd01974 369 LRSLLFTEPVDLLIGNT---YGKYIARDTDIPLVRFGF 403 (435)
T ss_pred HHHHHhhcCCCEEEECc---cHHHHHHHhCCCEEEeeC
Confidence 45566667899999985 357889999999987643
No 299
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=37.85 E-value=57 Score=30.03 Aligned_cols=51 Identities=22% Similarity=0.197 Sum_probs=35.6
Q ss_pred ceeeeccCchhHHHHHh-hCCceeccccccccccceeeeeecceEEEEecCCCCCcCHHHHHHHHHHHhcC
Q 036520 363 GTSLFHAGWGSVIETLQ-FGHSLVVLPLIIDQPLNARLLVDKDLAVQVERKDDGSFTRDGIAKALRLATVS 432 (473)
Q Consensus 363 ~~~ItHGG~~s~~eal~-~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~t~~~l~~~i~~ll~~ 432 (473)
.++|+=||-||++.|+. .++|++.+-... +|... .++.+++.+++.++++|
T Consensus 43 d~vi~iGGDGT~L~a~~~~~~Pilgin~G~-------------lGfl~------~~~~~~~~~~l~~~~~g 94 (256)
T PRK14075 43 DLIIVVGGDGTVLKAAKKVGTPLVGFKAGR-------------LGFLS------SYTLEEIDRFLEDLKNW 94 (256)
T ss_pred CEEEEECCcHHHHHHHHHcCCCEEEEeCCC-------------Ccccc------ccCHHHHHHHHHHHHcC
Confidence 33999999999999977 466666554211 33222 45678899999999884
No 300
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=37.84 E-value=29 Score=31.36 Aligned_cols=39 Identities=21% Similarity=0.124 Sum_probs=31.3
Q ss_pred EEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCCcc
Q 036520 6 HVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPKNI 44 (473)
Q Consensus 6 ~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~ 44 (473)
=+++.-.++.|-..-+.+++...+++|..|.|++.....
T Consensus 27 ~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~ 65 (234)
T PRK06067 27 LILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTS 65 (234)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCH
Confidence 356666678899998999988888899999999986543
No 301
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=37.82 E-value=66 Score=29.16 Aligned_cols=33 Identities=18% Similarity=0.214 Sum_probs=24.0
Q ss_pred CCcE-EEEcCCc-chHHHHHHHcCCCeEEEecchh
Q 036520 116 SVDW-IIVDVMS-HWAGKIAQEYHVPLLLFSAFSA 148 (473)
Q Consensus 116 ~pD~-vI~D~~~-~~~~~~A~~lgiP~v~~~~~~~ 148 (473)
-||+ +|.|+.. --|..=|+++|||.|.+.-+.+
T Consensus 156 ~Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn~ 190 (252)
T COG0052 156 LPDVLFVIDPRKEKIAVKEANKLGIPVVALVDTNC 190 (252)
T ss_pred CCCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCCC
Confidence 3886 5577644 4666779999999999866544
No 302
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=37.78 E-value=92 Score=32.48 Aligned_cols=81 Identities=14% Similarity=0.006 Sum_probs=45.4
Q ss_pred HHHHHHHHHhcCCCCEEEEEcCCCCCCCccccCchhhhhhcCCCceEEeccc-chHHHh-------hCCCcceeeeccCc
Q 036520 300 QVYEIAYGLELSGLPFLWALRKPEWATDDVDALPLGFADTIRGKGIVSIGWA-PQLEIL-------AHPSIGTSLFHAGW 371 (473)
Q Consensus 300 ~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~-pq~~ll-------~~~~~~~~ItHGG~ 371 (473)
.-+.+++.|.+.|.+.++-++++... .+-+.+. +.++++...-. .+.... ..-..+++++|.|-
T Consensus 15 ~~~~l~~~L~~~GV~~vFgvpG~~~~-----~l~dal~---~~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t~Gp 86 (564)
T PRK08155 15 GAELIVRLLERQGIRIVTGIPGGAIL-----PLYDALS---QSTQIRHILARHEQGAGFIAQGMARTTGKPAVCMACSGP 86 (564)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCcccH-----HHHHHHh---ccCCceEEEeccHHHHHHHHHHHHHHcCCCeEEEECCCC
Confidence 35667888888888888887765321 1111111 12233332211 111111 11233448888774
Q ss_pred ------hhHHHHHhhCCceeccc
Q 036520 372 ------GSVIETLQFGHSLVVLP 388 (473)
Q Consensus 372 ------~s~~eal~~GvP~l~~P 388 (473)
+.+.||.+.++|+|++.
T Consensus 87 G~~N~l~gl~~A~~~~~Pvl~i~ 109 (564)
T PRK08155 87 GATNLVTAIADARLDSIPLVCIT 109 (564)
T ss_pred cHHHHHHHHHHHHhcCCCEEEEe
Confidence 47899999999999985
No 303
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=37.34 E-value=99 Score=30.69 Aligned_cols=31 Identities=32% Similarity=0.290 Sum_probs=25.3
Q ss_pred EEEE-ecCCCccChHHHHHHHHHHHhCCCeEE
Q 036520 6 HVVM-LPWSAFGHLMPFFQLSIALAKSGVKVS 36 (473)
Q Consensus 6 ~vl~-~~~~~~gH~~p~l~la~~L~~~Gh~Vt 36 (473)
+|++ -+.++.|-..-.+.|.++|++||++|.
T Consensus 2 ~vvIAg~~SG~GKTTvT~glm~aL~~rg~~Vq 33 (451)
T COG1797 2 AVVIAGTSSGSGKTTVTLGLMRALRRRGLKVQ 33 (451)
T ss_pred ceEEecCCCCCcHHHHHHHHHHHHHhcCCccc
Confidence 3444 445577999999999999999999986
No 304
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=37.23 E-value=33 Score=30.85 Aligned_cols=27 Identities=15% Similarity=0.234 Sum_probs=20.0
Q ss_pred cChHHHHHHHHHHHhCCCeEEEEeCCC
Q 036520 16 GHLMPFFQLSIALAKSGVKVSFISTPK 42 (473)
Q Consensus 16 gH~~p~l~la~~L~~~Gh~Vt~~~~~~ 42 (473)
-|+..|.+.|++|.++|++|+++....
T Consensus 46 l~~saMRhfa~~L~~~G~~V~Y~~~~~ 72 (224)
T PF04244_consen 46 LFFSAMRHFADELRAKGFRVHYIELDD 72 (224)
T ss_dssp HHHHHHHHHHHHHHHTT--EEEE-TT-
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 367789999999999999999987543
No 305
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=37.14 E-value=60 Score=30.59 Aligned_cols=39 Identities=15% Similarity=0.025 Sum_probs=29.9
Q ss_pred CCCccEEEEecCCCcc-C---hHHHHHHHHHHHhCCCeEEEEeC
Q 036520 1 MARKLHVVMLPWSAFG-H---LMPFFQLSIALAKSGVKVSFIST 40 (473)
Q Consensus 1 m~~~~~vl~~~~~~~g-H---~~p~l~la~~L~~~Gh~Vt~~~~ 40 (473)
|+ ++||+++..+..+ | +...-.++++|.+.||+|.++..
T Consensus 1 ~~-~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~~~~ 43 (296)
T PRK14569 1 MK-NEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDA 43 (296)
T ss_pred CC-CcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEEEcC
Confidence 74 6799999886553 2 45677889999999999988753
No 306
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=36.93 E-value=47 Score=30.69 Aligned_cols=38 Identities=13% Similarity=0.284 Sum_probs=24.9
Q ss_pred cEEEEeecCcccCCHH-HHHHHHHHHhc--CCCCEEEEEcC
Q 036520 284 SVVFVGFGSECKLSKD-QVYEIAYGLEL--SGLPFLWALRK 321 (473)
Q Consensus 284 ~~V~vs~Gs~~~~~~~-~~~~~~~al~~--~~~~~i~~~~~ 321 (473)
.+++|||||......+ -+..+-+.+++ ++..+.|++.+
T Consensus 2 AIllvsFGTs~~~ar~~ti~~ie~~~~~~fp~~~V~~AfTS 42 (262)
T PF06180_consen 2 AILLVSFGTSYPEAREKTIDAIEKAVREAFPDYDVRRAFTS 42 (262)
T ss_dssp EEEEEE---S-CCCCHHHHHHHHHHHHHCSTTSEEEEEES-
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEchH
Confidence 4899999998875444 67777777754 68899999865
No 307
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=36.33 E-value=54 Score=32.68 Aligned_cols=34 Identities=21% Similarity=0.157 Sum_probs=26.7
Q ss_pred HHHHHhCCCcEEEEcCCcchHHHHHHHcCCCeEEEec
Q 036520 109 KQFVAQQSVDWIIVDVMSHWAGKIAQEYHVPLLLFSA 145 (473)
Q Consensus 109 ~~ll~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~ 145 (473)
.+.+++.+||++|... .+..+|+++|||++.+..
T Consensus 343 ~~~~~~~~pDl~Ig~s---~~~~~a~~~giP~~r~~~ 376 (416)
T cd01980 343 IAAVEEYRPDLAIGTT---PLVQYAKEKGIPALYYTN 376 (416)
T ss_pred HHHHhhcCCCEEEeCC---hhhHHHHHhCCCEEEecC
Confidence 3455678999999883 467799999999987643
No 308
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=36.30 E-value=49 Score=21.06 Aligned_cols=26 Identities=19% Similarity=0.266 Sum_probs=18.2
Q ss_pred CHHHHHHHHHHHhcCcchHHHHHHHHHH
Q 036520 418 TRDGIAKALRLATVSEEGEKLRVRAREA 445 (473)
Q Consensus 418 t~~~l~~~i~~ll~~~~~~~~~~~a~~~ 445 (473)
|++.|.+||..+..| .-++++.|++.
T Consensus 1 tee~l~~Ai~~v~~g--~~S~r~AA~~y 26 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNG--KMSIRKAAKKY 26 (45)
T ss_dssp -HHHHHHHHHHHHTT--SS-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence 578999999999984 25777766653
No 309
>PRK13768 GTPase; Provisional
Probab=36.06 E-value=1.5e+02 Score=27.12 Aligned_cols=37 Identities=22% Similarity=0.137 Sum_probs=29.6
Q ss_pred EEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 036520 6 HVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPK 42 (473)
Q Consensus 6 ~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~ 42 (473)
-+++.-.++.|=..-...++..|+.+|++|.++..+.
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~ 40 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDP 40 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCC
Confidence 3555555677888888999999999999999987554
No 310
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=36.01 E-value=1.7e+02 Score=25.16 Aligned_cols=103 Identities=13% Similarity=0.053 Sum_probs=51.5
Q ss_pred hhhhccccCCCCCcEEEEeecCcccCCHHHHHHHHHHHhcCCCCEEEEEcCCCCCCCccccCchhhhhhcCCCceEEecc
Q 036520 271 SKIFQWLDEQKPRSVVFVGFGSECKLSKDQVYEIAYGLELSGLPFLWALRKPEWATDDVDALPLGFADTIRGKGIVSIGW 350 (473)
Q Consensus 271 ~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~ 350 (473)
.++-++|.+.. ...|+-|. ..-.+....++..+.+-.++=+++..... ...++ ..-...+.+...
T Consensus 22 ~~lG~~la~~g---~~lV~GGg----~~GlM~a~a~ga~~~gG~viGi~p~~l~~----~~~~~----~~~~~~i~~~~~ 86 (178)
T TIGR00730 22 AELGAYLAGQG---WGLVYGGG----RVGLMGAIADAAMENGGTAVGVNPSGLFS----GEVVH----QNLTELIEVNGM 86 (178)
T ss_pred HHHHHHHHHCC---CEEEECCC----hHhHHHHHHHHHHhcCCeEEEecchhhhh----hhccC----CCCCceEEECCH
Confidence 34556665543 44555443 22445667777766666655444321100 00000 000112333222
Q ss_pred cchHHHhhCCCcceeeeccCchhHHHHHh---------hCCceeccc
Q 036520 351 APQLEILAHPSIGTSLFHAGWGSVIETLQ---------FGHSLVVLP 388 (473)
Q Consensus 351 ~pq~~ll~~~~~~~~ItHGG~~s~~eal~---------~GvP~l~~P 388 (473)
-....+|-..+-.+++--||.||+-|.+. +.+|++++=
T Consensus 87 ~~Rk~~m~~~sda~I~lPGG~GTL~El~e~~~~~qlg~~~kPiil~n 133 (178)
T TIGR00730 87 HERKAMMAELADAFIAMPGGFGTLEELFEVLTWAQLGIHQKPIILFN 133 (178)
T ss_pred HHHHHHHHHhCCEEEEcCCCcchHHHHHHHHHHHHcCCCCCCEEEEC
Confidence 23345554444445677788999998743 488887763
No 311
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=35.73 E-value=1.9e+02 Score=27.54 Aligned_cols=35 Identities=20% Similarity=0.188 Sum_probs=29.7
Q ss_pred ecCCCccChHHHHHHHHHHHhCCCeEEEEeCCCcc
Q 036520 10 LPWSAFGHLMPFFQLSIALAKSGVKVSFISTPKNI 44 (473)
Q Consensus 10 ~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~ 44 (473)
++.++.|=.=-.+.|++.|.++|++|.+++-.+-.
T Consensus 36 itvGGTGKTP~v~~La~~l~~~G~~~~IlSRGYg~ 70 (311)
T TIGR00682 36 LSVGGTGKTPVVVWLAELLKDRGLRVGVLSRGYGS 70 (311)
T ss_pred cccCCcChHHHHHHHHHHHHHCCCEEEEECCCCCC
Confidence 55688898888999999999999999999865543
No 312
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=35.61 E-value=2.2e+02 Score=26.07 Aligned_cols=106 Identities=15% Similarity=0.183 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhCC-CeEEEEeCCCccccCCCCCCCcccCCCeEEEEecCCccccccccCCCCCCCccCCCCChhhHHHHH
Q 036520 20 PFFQLSIALAKSG-VKVSFISTPKNIQRLPKPAPESEVAALINFVEFPLPASAALDDKLLLPEGAEATVDIPSENIQYLK 98 (473)
Q Consensus 20 p~l~la~~L~~~G-h~Vt~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 98 (473)
-+-..++.|.+.+ .+|.+.+.......+.... .....+-++.+|.+..+ .+++...--...-+.
T Consensus 117 ~~~eA~~~l~~~~~~~iflttGsk~L~~f~~~~---~~~~r~~~RvLp~~~~~-----~g~~~~~iia~~GPf------- 181 (249)
T PF02571_consen 117 SYEEAAELLKELGGGRIFLTTGSKNLPPFVPAP---LPGERLFARVLPTPESA-----LGFPPKNIIAMQGPF------- 181 (249)
T ss_pred CHHHHHHHHhhcCCCCEEEeCchhhHHHHhhcc---cCCCEEEEEECCCcccc-----CCCChhhEEEEeCCC-------
Confidence 3455666776666 7777777666555553200 12246667777644331 222211100001111
Q ss_pred HHHhhhhhHHHHHHHhCCCcEEEEcCCc-c---hHHHHHHHcCCCeEEEec
Q 036520 99 IAYDLLQHPFKQFVAQQSVDWIIVDVMS-H---WAGKIAQEYHVPLLLFSA 145 (473)
Q Consensus 99 ~~~~~~~~~l~~ll~~~~pD~vI~D~~~-~---~~~~~A~~lgiP~v~~~~ 145 (473)
..+.-..++++.+.|+||+=..- . .=..+|+.+|||++.+-.
T Consensus 182 -----s~e~n~al~~~~~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI~R 227 (249)
T PF02571_consen 182 -----SKELNRALFRQYGIDVLVTKESGGSGFDEKIEAARELGIPVIVIKR 227 (249)
T ss_pred -----CHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHHHHHcCCeEEEEeC
Confidence 12233567889999999986422 1 223689999999998844
No 313
>PRK13194 pyrrolidone-carboxylate peptidase; Provisional
Probab=35.56 E-value=1.2e+02 Score=26.88 Aligned_cols=26 Identities=23% Similarity=0.436 Sum_probs=19.5
Q ss_pred cEEEEecCCCcc--ChHHHHHHHHHHHh
Q 036520 5 LHVVMLPWSAFG--HLMPFFQLSIALAK 30 (473)
Q Consensus 5 ~~vl~~~~~~~g--H~~p~l~la~~L~~ 30 (473)
|+|++.-|+-+| -.||...++++|..
T Consensus 1 M~ILvTGF~PF~~~~~NPS~~~~~~L~~ 28 (208)
T PRK13194 1 MKVLVTGFEPFGGDKKNPTMDIVKALDG 28 (208)
T ss_pred CEEEEEeeCCCCCCCCCcHHHHHHhccc
Confidence 678776665443 48999999999954
No 314
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=35.51 E-value=75 Score=26.78 Aligned_cols=35 Identities=20% Similarity=0.142 Sum_probs=26.7
Q ss_pred EEEEeecCcccCCHHHHHHHHHHHhcCCCCEEEEE
Q 036520 285 VVFVGFGSECKLSKDQVYEIAYGLELSGLPFLWAL 319 (473)
Q Consensus 285 ~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~ 319 (473)
.+|+|+||-.......++..+.++.+.+.--++..
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~~~v~~~ 37 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALADIRVVAV 37 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 79999999887667778888888887765434443
No 315
>PRK05595 replicative DNA helicase; Provisional
Probab=35.40 E-value=1.2e+02 Score=30.62 Aligned_cols=40 Identities=13% Similarity=0.214 Sum_probs=31.2
Q ss_pred EEEecCCCccChHHHHHHHHHHH-hCCCeEEEEeCCCcccc
Q 036520 7 VVMLPWSAFGHLMPFFQLSIALA-KSGVKVSFISTPKNIQR 46 (473)
Q Consensus 7 vl~~~~~~~gH~~p~l~la~~L~-~~Gh~Vt~~~~~~~~~~ 46 (473)
+++...|+.|=..-++.+|..++ +.|+.|.|++-....+.
T Consensus 204 iviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~~~ 244 (444)
T PRK05595 204 ILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKEQ 244 (444)
T ss_pred EEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCHHH
Confidence 45667778899999999998876 56999999987655433
No 316
>PF15092 UPF0728: Uncharacterised protein family UPF0728
Probab=35.23 E-value=1.3e+02 Score=22.28 Aligned_cols=43 Identities=26% Similarity=0.300 Sum_probs=30.8
Q ss_pred CCCcc--EEEEecCCCcc----ChHHHHHHHHHHHhCCCeEEEEeCCCc
Q 036520 1 MARKL--HVVMLPWSAFG----HLMPFFQLSIALAKSGVKVSFISTPKN 43 (473)
Q Consensus 1 m~~~~--~vl~~~~~~~g----H~~p~l~la~~L~~~Gh~Vt~~~~~~~ 43 (473)
|+++. .|-+-|+.+.| +.+.+-.|-..|++.||+|.+.-...+
T Consensus 1 Mp~~a~V~iryGPY~a~glv~hrt~RL~GLqa~L~~dGh~v~L~~~~d~ 49 (88)
T PF15092_consen 1 MPKNAYVTIRYGPYSACGLVEHRTFRLEGLQAVLAKDGHEVILEKIEDW 49 (88)
T ss_pred CCCccEEEEEecCchhhCeeeehHHHHHHHHHHHHhCCcEEEEEEeccc
Confidence 65543 33445555554 467899999999999999999876554
No 317
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=34.94 E-value=75 Score=33.34 Aligned_cols=27 Identities=11% Similarity=0.234 Sum_probs=21.8
Q ss_pred cceeeeccCc------hhHHHHHhhCCceeccc
Q 036520 362 IGTSLFHAGW------GSVIETLQFGHSLVVLP 388 (473)
Q Consensus 362 ~~~~ItHGG~------~s~~eal~~GvP~l~~P 388 (473)
.+++++|.|- +.+.+|.+.++|+|++.
T Consensus 64 ~gv~~~t~GPG~~n~l~~i~~A~~~~~Pvl~I~ 96 (586)
T PRK06276 64 VGVCVATSGPGATNLVTGIATAYADSSPVIALT 96 (586)
T ss_pred CEEEEECCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 3448888774 57899999999999984
No 318
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=34.70 E-value=52 Score=31.30 Aligned_cols=40 Identities=18% Similarity=-0.017 Sum_probs=31.7
Q ss_pred cEEEEecCCC---ccChHHHHHHHHHHHhCCCeEEEEeCCCcc
Q 036520 5 LHVVMLPWSA---FGHLMPFFQLSIALAKSGVKVSFISTPKNI 44 (473)
Q Consensus 5 ~~vl~~~~~~---~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~ 44 (473)
|||+|+.-+- .-+.+....|..+.++|||+|.++.+....
T Consensus 1 m~~~~~~~~~~~~~~~~~st~~L~~aa~~rG~~v~~~~~~~l~ 43 (312)
T TIGR01380 1 LKVAFQMDPIESINIGKDTTFALMEEAQKRGHELFFYEPGDLS 43 (312)
T ss_pred CeEEEEeCCHHHCCCCcChHHHHHHHHHHcCCEEEEEehhheE
Confidence 5788877642 266678899999999999999999976654
No 319
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=34.32 E-value=33 Score=31.32 Aligned_cols=52 Identities=13% Similarity=0.216 Sum_probs=33.6
Q ss_pred CCcceeeeccCchhHHHHHhh----CCceeccccccccccceeeeeecceEEEEecCCCCCcCHHHHHHHHHHHhc
Q 036520 360 PSIGTSLFHAGWGSVIETLQF----GHSLVVLPLIIDQPLNARLLVDKDLAVQVERKDDGSFTRDGIAKALRLATV 431 (473)
Q Consensus 360 ~~~~~~ItHGG~~s~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~t~~~l~~~i~~ll~ 431 (473)
+++ +|+-||-||++.++.. ++|++++-... +|.... ..+.+++.+++.++..
T Consensus 26 ~Dl--vi~iGGDGTlL~a~~~~~~~~~PvlGIN~G~-------------lGFL~~-----~~~~~e~~~~l~~~~~ 81 (246)
T PRK04761 26 ADV--IVALGGDGFMLQTLHRYMNSGKPVYGMNRGS-------------VGFLMN-----EYSEDDLLERIAAAEP 81 (246)
T ss_pred CCE--EEEECCCHHHHHHHHHhcCCCCeEEEEeCCC-------------CCcccC-----CCCHHHHHHHHHHhhc
Confidence 455 9999999999988664 67877765421 232221 1345667777776665
No 320
>PRK05114 hypothetical protein; Provisional
Probab=34.28 E-value=1.4e+02 Score=20.19 Aligned_cols=35 Identities=11% Similarity=0.057 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHh
Q 036520 435 GEKLRVRAREAANTFNDKKLHDDYSVRFVEYLKIN 469 (473)
Q Consensus 435 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (473)
.+.-.+.+.+++..++.+-++-.+...+.+.+++.
T Consensus 10 HeeQQ~AVErIq~LMaqGmSsgEAI~~VA~eiRe~ 44 (59)
T PRK05114 10 HEQQQKAVERIQELMAQGMSSGEAIALVAEELRAN 44 (59)
T ss_pred HHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHH
Confidence 34566777788888877777777777777777653
No 321
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=34.20 E-value=92 Score=27.16 Aligned_cols=42 Identities=14% Similarity=0.077 Sum_probs=30.0
Q ss_pred hhhHHHHHHHhCCCcEEEEcC--CcchHHHHHHHcCCCeEEEec
Q 036520 104 LQHPFKQFVAQQSVDWIIVDV--MSHWAGKIAQEYHVPLLLFSA 145 (473)
Q Consensus 104 ~~~~l~~ll~~~~pD~vI~D~--~~~~~~~~A~~lgiP~v~~~~ 145 (473)
....+.+.+++.++|+|++=. -...|..+|..+|+|++.+.-
T Consensus 38 i~~~la~~~~~~~~D~Ivg~e~~GiplA~~lA~~Lg~p~v~vRK 81 (189)
T PRK09219 38 IGKEFARRFKDEGITKILTIEASGIAPAVMAALALGVPVVFAKK 81 (189)
T ss_pred HHHHHHHHhccCCCCEEEEEccccHHHHHHHHHHHCCCEEEEEE
Confidence 344455555667899988642 235777899999999998744
No 322
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=34.20 E-value=42 Score=33.87 Aligned_cols=33 Identities=15% Similarity=0.167 Sum_probs=24.9
Q ss_pred cEEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 036520 5 LHVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPK 42 (473)
Q Consensus 5 ~~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~ 42 (473)
|||+|+-.|-- -+.-|.+|+++||+||++-..+
T Consensus 1 ~rVai~GaG~A-----gL~~a~~La~~g~~vt~~ea~~ 33 (485)
T COG3349 1 MRVAIAGAGLA-----GLAAAYELADAGYDVTLYEARD 33 (485)
T ss_pred CeEEEEcccHH-----HHHHHHHHHhCCCceEEEeccC
Confidence 56776655433 4788999999999999987554
No 323
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=34.01 E-value=4e+02 Score=25.01 Aligned_cols=69 Identities=12% Similarity=0.048 Sum_probs=46.5
Q ss_pred ccCchhHHHHHhhCCceeccccc--cccccceeeeeecceEEEEecCCCCCcCHHHHHHHHHHHhcCcchHHHHHHHHHH
Q 036520 368 HAGWGSVIETLQFGHSLVVLPLI--IDQPLNARLLVDKDLAVQVERKDDGSFTRDGIAKALRLATVSEEGEKLRVRAREA 445 (473)
Q Consensus 368 HGG~~s~~eal~~GvP~l~~P~~--~DQ~~na~~v~~~G~G~~l~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~a~~~ 445 (473)
..|.+....|+.+|+...++-.+ .+..+..-.+.+.-+-+. . .-|.++|.+.+.++-. .-|-+..+.+
T Consensus 205 f~G~~~~~~ai~~G~k~tG~TvH~v~~~lD~GpII~Q~~v~V~--~----~dt~e~L~~r~~~~E~----~~l~~ai~~~ 274 (289)
T PRK13010 205 FKGARPYHQAHARGVKLIGATAHFVTDDLDEGPIIEQDVERVD--H----SYSPEDLVAKGRDVEC----LTLARAVKAF 274 (289)
T ss_pred CCCCCHHHHHHHcCCCeEEEEEEEEcCCCCCCCceEEEEEEcC--C----CCCHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 35888999999999999888865 366666666655444433 2 3478899988877633 4455555444
Q ss_pred H
Q 036520 446 A 446 (473)
Q Consensus 446 ~ 446 (473)
.
T Consensus 275 ~ 275 (289)
T PRK13010 275 I 275 (289)
T ss_pred H
Confidence 3
No 324
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=33.54 E-value=28 Score=34.12 Aligned_cols=41 Identities=24% Similarity=0.400 Sum_probs=32.7
Q ss_pred EEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCCccccCC
Q 036520 7 VVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPKNIQRLP 48 (473)
Q Consensus 7 vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~ 48 (473)
||+-=-|+-|--.=+++++..|+.+| .|.+++.++..++++
T Consensus 96 iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~Qik 136 (456)
T COG1066 96 ILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQIK 136 (456)
T ss_pred EEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHHH
Confidence 44445567777788999999999999 999999988766553
No 325
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=33.49 E-value=94 Score=29.06 Aligned_cols=31 Identities=10% Similarity=0.178 Sum_probs=26.0
Q ss_pred cCCHHHHHHHHHHHhcCCCCEEEEEcCCCCC
Q 036520 295 KLSKDQVYEIAYGLELSGLPFLWALRKPEWA 325 (473)
Q Consensus 295 ~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~ 325 (473)
..+.++.+.+-+++.....+.||..+++...
T Consensus 45 ~s~~~Ra~dL~~a~~d~~i~aI~~~rGG~ga 75 (282)
T cd07025 45 GTDEERAADLNAAFADPEIKAIWCARGGYGA 75 (282)
T ss_pred CCHHHHHHHHHHHhhCCCCCEEEEcCCcCCH
Confidence 3467888889999999999999999987554
No 326
>PRK06321 replicative DNA helicase; Provisional
Probab=33.38 E-value=1.9e+02 Score=29.38 Aligned_cols=41 Identities=12% Similarity=0.235 Sum_probs=31.9
Q ss_pred EEEecCCCccChHHHHHHHHHHHh-CCCeEEEEeCCCccccC
Q 036520 7 VVMLPWSAFGHLMPFFQLSIALAK-SGVKVSFISTPKNIQRL 47 (473)
Q Consensus 7 vl~~~~~~~gH~~p~l~la~~L~~-~Gh~Vt~~~~~~~~~~~ 47 (473)
+++..-|+.|=..-++.+|...+. .|+.|.|++-+...+.+
T Consensus 229 iiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ql 270 (472)
T PRK06321 229 MILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQL 270 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHH
Confidence 466777888999999999999874 58999999876554433
No 327
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=33.35 E-value=81 Score=28.10 Aligned_cols=39 Identities=15% Similarity=0.061 Sum_probs=35.2
Q ss_pred ccEEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 036520 4 KLHVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPK 42 (473)
Q Consensus 4 ~~~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~ 42 (473)
+.+|++.+.++-.|-....=++..|..+|++|+++....
T Consensus 88 ~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~v 126 (213)
T cd02069 88 KGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMV 126 (213)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCC
Confidence 468999999999999999999999999999999988543
No 328
>PRK13604 luxD acyl transferase; Provisional
Probab=33.12 E-value=84 Score=29.79 Aligned_cols=35 Identities=14% Similarity=0.131 Sum_probs=28.8
Q ss_pred cEEEEecCCCccChHHHHHHHHHHHhCCCeEEEEe
Q 036520 5 LHVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFIS 39 (473)
Q Consensus 5 ~~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~ 39 (473)
..+++++.+..++-..+..+|+.|+++|+.|.-+=
T Consensus 37 ~~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrfD 71 (307)
T PRK13604 37 NNTILIASGFARRMDHFAGLAEYLSSNGFHVIRYD 71 (307)
T ss_pred CCEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEec
Confidence 35777888877777779999999999999987653
No 329
>PRK08760 replicative DNA helicase; Provisional
Probab=32.88 E-value=92 Score=31.70 Aligned_cols=39 Identities=15% Similarity=0.129 Sum_probs=31.5
Q ss_pred EEEecCCCccChHHHHHHHHHHHh-CCCeEEEEeCCCccc
Q 036520 7 VVMLPWSAFGHLMPFFQLSIALAK-SGVKVSFISTPKNIQ 45 (473)
Q Consensus 7 vl~~~~~~~gH~~p~l~la~~L~~-~Gh~Vt~~~~~~~~~ 45 (473)
+++...|+.|=..-++.+|...+. .|+.|.|++-+...+
T Consensus 232 ivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ 271 (476)
T PRK08760 232 IILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSAS 271 (476)
T ss_pred EEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHH
Confidence 566777889999999999998875 499999998766544
No 330
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=32.81 E-value=2.3e+02 Score=26.07 Aligned_cols=42 Identities=24% Similarity=0.196 Sum_probs=32.4
Q ss_pred ccEEEEecC-CCccChHHHHHHHHHHHhCCCeEEEEeCCCccc
Q 036520 4 KLHVVMLPW-SAFGHLMPFFQLSIALAKSGVKVSFISTPKNIQ 45 (473)
Q Consensus 4 ~~~vl~~~~-~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~ 45 (473)
+.|..|+-. ++-|-..-.-.||-.|+.-+|.|.+++++..+.
T Consensus 18 slKwifVGGKGGVGKTTcs~sLAvqla~~r~~vLiISTDPAHN 60 (323)
T KOG2825|consen 18 SLKWIFVGGKGGVGKTTCSCSLAVQLAKVRESVLIISTDPAHN 60 (323)
T ss_pred eeeEEEEcCcCCcCccchhhHHHHHHhccCCceEEeecCcccc
Confidence 345555544 466888899999999999999999999876543
No 331
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=32.70 E-value=84 Score=29.41 Aligned_cols=23 Identities=35% Similarity=0.369 Sum_probs=18.9
Q ss_pred HHHHHHHHhCCCeEEEEeCCCcc
Q 036520 22 FQLSIALAKSGVKVSFISTPKNI 44 (473)
Q Consensus 22 l~la~~L~~~Gh~Vt~~~~~~~~ 44 (473)
..+|..++++|++|.++..+...
T Consensus 3 ~a~a~~~a~~g~~vllv~~Dp~~ 25 (284)
T TIGR00345 3 CATAIRLAEQGKKVLLVSTDPAH 25 (284)
T ss_pred HHHHHHHHHCCCeEEEEECCCCC
Confidence 46788999999999999876554
No 332
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=32.64 E-value=63 Score=30.91 Aligned_cols=36 Identities=28% Similarity=0.391 Sum_probs=28.6
Q ss_pred CCCccEEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 036520 1 MARKLHVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTP 41 (473)
Q Consensus 1 m~~~~~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 41 (473)
|...|||.|+=.|..| ..+|..|+++||+|+++...
T Consensus 1 ~~~~m~I~iIG~G~mG-----~~ia~~L~~~G~~V~~~~r~ 36 (328)
T PRK14618 1 MHHGMRVAVLGAGAWG-----TALAVLAASKGVPVRLWARR 36 (328)
T ss_pred CCCCCeEEEECcCHHH-----HHHHHHHHHCCCeEEEEeCC
Confidence 6667899888666555 46788999999999998864
No 333
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=32.61 E-value=1.6e+02 Score=30.68 Aligned_cols=27 Identities=19% Similarity=0.274 Sum_probs=21.9
Q ss_pred cceeeeccCc------hhHHHHHhhCCceeccc
Q 036520 362 IGTSLFHAGW------GSVIETLQFGHSLVVLP 388 (473)
Q Consensus 362 ~~~~ItHGG~------~s~~eal~~GvP~l~~P 388 (473)
.+++++|.|- +.+.+|...++|+|++.
T Consensus 65 ~gv~~~t~GpG~~n~l~~i~~A~~~~~Pvl~i~ 97 (558)
T TIGR00118 65 VGVVLVTSGPGATNLVTGIATAYMDSIPMVVFT 97 (558)
T ss_pred CEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 3448888774 47899999999999994
No 334
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=32.50 E-value=81 Score=32.65 Aligned_cols=28 Identities=25% Similarity=0.477 Sum_probs=22.4
Q ss_pred cChHHHHH---HHHHHHhCCCeEEEEeCCCc
Q 036520 16 GHLMPFFQ---LSIALAKSGVKVSFISTPKN 43 (473)
Q Consensus 16 gH~~p~l~---la~~L~~~Gh~Vt~~~~~~~ 43 (473)
||+.+.++ +|+-++.+||+|.|+|..+-
T Consensus 23 GH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDe 53 (558)
T COG0143 23 GHLYTYLAADVYARYLRLRGYEVFFLTGTDE 53 (558)
T ss_pred hhHHHHHHHHHHHHHHHhcCCeEEEEeccCC
Confidence 99997654 57777778999999997664
No 335
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=32.13 E-value=1.1e+02 Score=26.41 Aligned_cols=37 Identities=19% Similarity=0.183 Sum_probs=29.1
Q ss_pred HHHHHHHhCCCcEEEEcC--CcchHHHHHHHcCCCeEEE
Q 036520 107 PFKQFVAQQSVDWIIVDV--MSHWAGKIAQEYHVPLLLF 143 (473)
Q Consensus 107 ~l~~ll~~~~pD~vI~D~--~~~~~~~~A~~lgiP~v~~ 143 (473)
.+.+.+++.++|.|++=. -...|..+|.++|+|+|.+
T Consensus 44 ~~~~~~~~~~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~v 82 (179)
T COG0503 44 ELAERYKDDGIDKIVTIEARGIPLAAAVALELGVPFVPV 82 (179)
T ss_pred HHHHHhcccCCCEEEEEccccchhHHHHHHHhCCCEEEE
Confidence 666777777899998542 3357888999999999986
No 336
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=31.99 E-value=59 Score=30.90 Aligned_cols=35 Identities=20% Similarity=0.281 Sum_probs=27.0
Q ss_pred CccEEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 036520 3 RKLHVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPK 42 (473)
Q Consensus 3 ~~~~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~ 42 (473)
.+|||+++=.|+.| ..+|..|+++||+|+++....
T Consensus 4 ~~m~I~IiG~GaiG-----~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 4 ETPRIGIIGTGAIG-----GFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred cCcEEEEECCCHHH-----HHHHHHHHHCCCeEEEEEeCC
Confidence 45899999666655 346788999999999998654
No 337
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=31.94 E-value=37 Score=31.00 Aligned_cols=26 Identities=31% Similarity=0.091 Sum_probs=19.8
Q ss_pred ChHHHHHHHHHHHhCCCeEEEEeCCC
Q 036520 17 HLMPFFQLSIALAKSGVKVSFISTPK 42 (473)
Q Consensus 17 H~~p~l~la~~L~~~Gh~Vt~~~~~~ 42 (473)
=-.-+-.|+++|+++||+|+++++..
T Consensus 18 Lgdv~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 18 LGDVVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHHHHHTT-EEEEEEE-T
T ss_pred HhHHHHHHHHHHHhcCCeEEEEEccc
Confidence 33456789999999999999999754
No 338
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=31.93 E-value=1.4e+02 Score=25.06 Aligned_cols=29 Identities=10% Similarity=0.046 Sum_probs=21.7
Q ss_pred cceeeeccCc------hhHHHHHhhCCceeccccc
Q 036520 362 IGTSLFHAGW------GSVIETLQFGHSLVVLPLI 390 (473)
Q Consensus 362 ~~~~ItHGG~------~s~~eal~~GvP~l~~P~~ 390 (473)
.+++++|.|- +.+.+|...++|+|++.-.
T Consensus 60 ~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g~ 94 (162)
T cd07038 60 LGALVTTYGVGELSALNGIAGAYAEHVPVVHIVGA 94 (162)
T ss_pred CEEEEEcCCccHHHHHHHHHHHHHcCCCEEEEecC
Confidence 4447777664 4678899999999999643
No 339
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=31.81 E-value=2.6e+02 Score=24.13 Aligned_cols=51 Identities=8% Similarity=0.111 Sum_probs=33.0
Q ss_pred CCceeccccc----ccc---ccceeeeeecceEEEEecCC---------CCCcCHHHHHHHHHHHhc
Q 036520 381 GHSLVVLPLI----IDQ---PLNARLLVDKDLAVQVERKD---------DGSFTRDGIAKALRLATV 431 (473)
Q Consensus 381 GvP~l~~P~~----~DQ---~~na~~v~~~G~G~~l~~~~---------~~~~t~~~l~~~i~~ll~ 431 (473)
++|++++|-. .+. ..|..++.+.|+=+.-.... .+-.+.++|.+.+.+.+.
T Consensus 113 ~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~vi~p~~g~la~~~~g~g~~~~~~~i~~~v~~~~~ 179 (182)
T PRK07313 113 TTPKLIAPAMNTKMYENPATQRNLKTLKEDGVQEIEPKEGLLACGDEGYGALADIETILETIENTLK 179 (182)
T ss_pred CCCEEEEECCCHHHhcCHHHHHHHHHHHHCCCEEECCCCCccccCCccCCCCCCHHHHHHHHHHHhc
Confidence 8999999963 333 34667777777655544420 123567888888877765
No 340
>PF03701 UPF0181: Uncharacterised protein family (UPF0181); InterPro: IPR005371 This family contains small proteins of about 50 amino acids of unknown function. The family includes YoaH P76260 from SWISSPROT.
Probab=31.78 E-value=1.4e+02 Score=19.50 Aligned_cols=35 Identities=3% Similarity=-0.021 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHh
Q 036520 435 GEKLRVRAREAANTFNDKKLHDDYSVRFVEYLKIN 469 (473)
Q Consensus 435 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (473)
.+.-.+.+.++++.+..+-++.++...+.+.+++.
T Consensus 10 HeeQQ~AvE~Iq~LMaqGmSsgEAI~~VA~~iRe~ 44 (51)
T PF03701_consen 10 HEEQQQAVERIQELMAQGMSSGEAIAIVAQEIREE 44 (51)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 34556677778888877777777877777777653
No 341
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=31.57 E-value=78 Score=25.48 Aligned_cols=38 Identities=16% Similarity=0.399 Sum_probs=28.0
Q ss_pred cEEEEeecCcccCCHHHHHHHHHHHhc--CCCCEEEEEcC
Q 036520 284 SVVFVGFGSECKLSKDQVYEIAYGLEL--SGLPFLWALRK 321 (473)
Q Consensus 284 ~~V~vs~Gs~~~~~~~~~~~~~~al~~--~~~~~i~~~~~ 321 (473)
.+++++|||......+.+..+.+.+++ ++..+-|.+.+
T Consensus 2 aillv~fGS~~~~~~~~~~~i~~~l~~~~p~~~V~~afts 41 (127)
T cd03412 2 AILLVSFGTSYPTAEKTIDAIEDKVRAAFPDYEVRWAFTS 41 (127)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHHHCCCCeEEEEecH
Confidence 489999999876445667778887753 56677787653
No 342
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=31.56 E-value=1.8e+02 Score=23.50 Aligned_cols=94 Identities=16% Similarity=0.298 Sum_probs=52.1
Q ss_pred EEEEeecCcccCCHHHHHHHHHHHhcCCCCEEEEEcCCCCCC------CccccCchhhhhhcCCCceEEecccchHHHhh
Q 036520 285 VVFVGFGSECKLSKDQVYEIAYGLELSGLPFLWALRKPEWAT------DDVDALPLGFADTIRGKGIVSIGWAPQLEILA 358 (473)
Q Consensus 285 ~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~------~~~~~~p~~~~~~~~~~nv~~~~~~pq~~ll~ 358 (473)
.||+|- -...+..+.|.++++..+.++.+..+-....- +..+.-|+.|...-+... + .-+--.-++.
T Consensus 2 ~VYLsG----EIHtdWRe~I~~ga~~~~L~v~F~~pvtdH~aSD~~G~~iLG~e~~~fw~D~k~a~--i-NaiRT~~li~ 74 (144)
T TIGR03646 2 TVYLAG----EIHTDWREEIKEGAKSKNLPIVFSGPVTDHEASDNIGEDILGKQPSNFWRDDAAAS--I-NNIRTRKLIE 74 (144)
T ss_pred eEEEcC----cccchHHHHHHHHHHHcCCCeEEecCCCCCcchhhhhHHHhCCCCccccccccccc--h-hhHHHHHHHh
Confidence 467752 23557788899999888888777654332210 001112222222111111 1 1122345677
Q ss_pred CCCcceeeeccC-----chhHHHH---HhhCCceecc
Q 036520 359 HPSIGTSLFHAG-----WGSVIET---LQFGHSLVVL 387 (473)
Q Consensus 359 ~~~~~~~ItHGG-----~~s~~ea---l~~GvP~l~~ 387 (473)
.|++ +|-.=| ||+...| ++.|+|+|++
T Consensus 75 ~aDv--vVvrFGekYKQWNaAfDAg~aaAlgKplI~l 109 (144)
T TIGR03646 75 KADV--VIALFGEKYKQWNAAFDAGYAAALGKPLIIL 109 (144)
T ss_pred hCCE--EEEEechHHHHHHHHhhHHHHHHcCCCeEEe
Confidence 7887 777777 7777665 6678888776
No 343
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=31.51 E-value=86 Score=32.33 Aligned_cols=120 Identities=8% Similarity=0.004 Sum_probs=64.1
Q ss_pred ccChHHHHHHH-HHHHhCCCeEEEEeCCCccccCCCCCCCcccCCCeEEEEecCCccccccccCCCCCCCcc-----CCC
Q 036520 15 FGHLMPFFQLS-IALAKSGVKVSFISTPKNIQRLPKPAPESEVAALINFVEFPLPASAALDDKLLLPEGAEA-----TVD 88 (473)
Q Consensus 15 ~gH~~p~l~la-~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~l~~~~~~-----~~~ 88 (473)
.|++.-.+.+| +.+...|++|.+.- ....+.+++.. .+.++.++.+..++..-+......... +..
T Consensus 36 ~~~~~~~~~~a~~~~~~~~~dviIsr-G~ta~~i~~~~-------~iPVv~i~~s~~Dil~al~~a~~~~~~ia~vg~~~ 107 (526)
T TIGR02329 36 QLGFEDAVREIRQRLGAERCDVVVAG-GSNGAYLKSRL-------SLPVIVIKPTGFDVMQALARARRIASSIGVVTHQD 107 (526)
T ss_pred eccHHHHHHHHHHHHHhCCCcEEEEC-chHHHHHHHhC-------CCCEEEecCChhhHHHHHHHHHhcCCcEEEEecCc
Confidence 36777778888 44666688876654 34445555431 566777776554222111000000000 111
Q ss_pred CChhhHHHHHHHHhh-----------hhhHHHHHHHhCCCcEEEEcCCcchHHHHHHHcCCCeEEEecc
Q 036520 89 IPSENIQYLKIAYDL-----------LQHPFKQFVAQQSVDWIIVDVMSHWAGKIAQEYHVPLLLFSAF 146 (473)
Q Consensus 89 ~~~~~~~~~~~~~~~-----------~~~~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~ 146 (473)
.. .....+...+.. -......-+++.+.++||.|. .+..+|+++|++.|.+.+.
T Consensus 108 ~~-~~~~~~~~ll~~~i~~~~~~~~~e~~~~~~~l~~~G~~~viG~~---~~~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 108 TP-PALRRFQAAFNLDIVQRSYVTEEDARSCVNDLRARGIGAVVGAG---LITDLAEQAGLHGVFLYSA 172 (526)
T ss_pred cc-HHHHHHHHHhCCceEEEEecCHHHHHHHHHHHHHCCCCEEECCh---HHHHHHHHcCCceEEEecH
Confidence 11 112222222211 122233445667999999996 3568999999999988664
No 344
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=31.42 E-value=60 Score=22.72 Aligned_cols=22 Identities=23% Similarity=0.280 Sum_probs=17.8
Q ss_pred HHHHHHHHHhCCCeEEEEeCCC
Q 036520 21 FFQLSIALAKSGVKVSFISTPK 42 (473)
Q Consensus 21 ~l~la~~L~~~Gh~Vt~~~~~~ 42 (473)
-+..|..|+++|++|+++-..+
T Consensus 8 Gl~aA~~L~~~g~~v~v~E~~~ 29 (68)
T PF13450_consen 8 GLAAAYYLAKAGYRVTVFEKND 29 (68)
T ss_dssp HHHHHHHHHHTTSEEEEEESSS
T ss_pred HHHHHHHHHHCCCcEEEEecCc
Confidence 3677899999999999987544
No 345
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=31.40 E-value=60 Score=27.87 Aligned_cols=40 Identities=10% Similarity=0.129 Sum_probs=29.1
Q ss_pred EEEecCCCccChHH-HHHHHHHHHh-CCCeEEEEeCCCccccC
Q 036520 7 VVMLPWSAFGHLMP-FFQLSIALAK-SGVKVSFISTPKNIQRL 47 (473)
Q Consensus 7 vl~~~~~~~gH~~p-~l~la~~L~~-~Gh~Vt~~~~~~~~~~~ 47 (473)
|+..-.+ .||... .+.+.++|++ +||+|.++.++...+.+
T Consensus 2 i~~gitG-sg~~l~e~v~~l~~L~~~~g~eV~vv~S~~A~~vi 43 (174)
T TIGR02699 2 IAWGITG-SGDKLPETYSIMKDVKNRYGDEIDVFLSKAGEQVV 43 (174)
T ss_pred EEEEEEc-cHHHHHHHHHHHHHHHHhcCCEEEEEECHhHHHHH
Confidence 4444443 377765 8899999985 59999999988766543
No 346
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=31.40 E-value=67 Score=29.83 Aligned_cols=53 Identities=15% Similarity=0.245 Sum_probs=36.5
Q ss_pred CCCcceeeeccCchhHHHHHhh-CCceeccccccccccceeeeeecceEEEEecCCCCCcCHHHHHHHHHHHhcC
Q 036520 359 HPSIGTSLFHAGWGSVIETLQF-GHSLVVLPLIIDQPLNARLLVDKDLAVQVERKDDGSFTRDGIAKALRLATVS 432 (473)
Q Consensus 359 ~~~~~~~ItHGG~~s~~eal~~-GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~t~~~l~~~i~~ll~~ 432 (473)
.+++ +|+=||-||++.+... .+|++++-. - .+|.-. .++.+++.++|+++++|
T Consensus 52 ~~D~--vi~lGGDGT~L~a~~~~~~PilGIN~--------G-----~lGFL~------~~~~~~~~~~l~~i~~g 105 (271)
T PRK01185 52 NADV--IITIGGDGTILRTLQRAKGPILGINM--------G-----GLGFLT------EIEIDEVGSAIKKLIRG 105 (271)
T ss_pred CCCE--EEEEcCcHHHHHHHHHcCCCEEEEEC--------C-----CCccCc------ccCHHHHHHHHHHHHcC
Confidence 3555 9999999999999874 445554422 1 123221 45779999999999984
No 347
>PRK13193 pyrrolidone-carboxylate peptidase; Provisional
Probab=31.21 E-value=1.6e+02 Score=26.07 Aligned_cols=26 Identities=19% Similarity=0.231 Sum_probs=19.6
Q ss_pred cEEEEecCCCcc--ChHHHHHHHHHHHh
Q 036520 5 LHVVMLPWSAFG--HLMPFFQLSIALAK 30 (473)
Q Consensus 5 ~~vl~~~~~~~g--H~~p~l~la~~L~~ 30 (473)
|+||+.-|+-+| -.||...++++|..
T Consensus 1 M~vLiTGF~PF~g~~~NPS~~~v~~L~~ 28 (209)
T PRK13193 1 MTVLLFGFEPFLEYKENPSQLIVEALNG 28 (209)
T ss_pred CEEEEEeeCCCCCCCCCcHHHHHHHhhc
Confidence 677776666553 48899999999965
No 348
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=31.16 E-value=1.4e+02 Score=29.80 Aligned_cols=36 Identities=11% Similarity=0.161 Sum_probs=23.1
Q ss_pred HHHHHHHhCCCcEEEEcCCcc---hHHHHHHHcCCCeEE
Q 036520 107 PFKQFVAQQSVDWIIVDVMSH---WAGKIAQEYHVPLLL 142 (473)
Q Consensus 107 ~l~~ll~~~~pD~vI~D~~~~---~~~~~A~~lgiP~v~ 142 (473)
.+.+++++.++|+||...-.. ......+.+|+|++.
T Consensus 53 ~l~~~~~~~~id~vi~~~e~~l~~~~~~~l~~~gi~~~g 91 (420)
T PRK00885 53 ALVAFAKEEGIDLTVVGPEAPLVAGIVDAFRAAGLPIFG 91 (420)
T ss_pred HHHHHHHHhCCCEEEECCchHHHHHHHHHHHHCCCcEEC
Confidence 456677788899999764222 223355678998653
No 349
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=31.00 E-value=69 Score=33.46 Aligned_cols=51 Identities=14% Similarity=0.246 Sum_probs=37.6
Q ss_pred ceeeeccCchhHHHHHhh----CCceeccccccccccceeeeeecceEEEEecCCCCCcCHHHHHHHHHHHhcC
Q 036520 363 GTSLFHAGWGSVIETLQF----GHSLVVLPLIIDQPLNARLLVDKDLAVQVERKDDGSFTRDGIAKALRLATVS 432 (473)
Q Consensus 363 ~~~ItHGG~~s~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~t~~~l~~~i~~ll~~ 432 (473)
.++|+-||-||++.+... ++|++++-... +|... .++.+++.++|.++++|
T Consensus 350 dlvi~lGGDGT~L~aa~~~~~~~~PilGin~G~-------------lGFL~------~~~~~~~~~~l~~~~~g 404 (569)
T PRK14076 350 SHIISIGGDGTVLRASKLVNGEEIPIICINMGT-------------VGFLT------EFSKEEIFKAIDSIISG 404 (569)
T ss_pred CEEEEECCcHHHHHHHHHhcCCCCCEEEEcCCC-------------CCcCc------ccCHHHHHHHHHHHHcC
Confidence 449999999999999764 67877765422 22211 45778999999999984
No 350
>PRK11914 diacylglycerol kinase; Reviewed
Probab=30.95 E-value=1.2e+02 Score=28.73 Aligned_cols=26 Identities=19% Similarity=0.268 Sum_probs=21.8
Q ss_pred eeeeccCchhHHHHH----hhCCceecccc
Q 036520 364 TSLFHAGWGSVIETL----QFGHSLVVLPL 389 (473)
Q Consensus 364 ~~ItHGG~~s~~eal----~~GvP~l~~P~ 389 (473)
.+|--||-||+.|++ ..++|+-++|.
T Consensus 67 ~vvv~GGDGTi~evv~~l~~~~~~lgiiP~ 96 (306)
T PRK11914 67 ALVVVGGDGVISNALQVLAGTDIPLGIIPA 96 (306)
T ss_pred EEEEECCchHHHHHhHHhccCCCcEEEEeC
Confidence 399999999999987 34788899995
No 351
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=30.94 E-value=1.1e+02 Score=25.12 Aligned_cols=37 Identities=22% Similarity=0.319 Sum_probs=29.0
Q ss_pred cEEEEeecCcccCCHHHHHHHHHHHhcCCCCEEEEEcC
Q 036520 284 SVVFVGFGSECKLSKDQVYEIAYGLELSGLPFLWALRK 321 (473)
Q Consensus 284 ~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~ 321 (473)
..|++++||-.....+.++.+++.+. .+.+++++...
T Consensus 52 d~vvi~lGtNd~~~~~nl~~ii~~~~-~~~~ivlv~~~ 88 (150)
T cd01840 52 KTVVIGLGTNGPFTKDQLDELLDALG-PDRQVYLVNPH 88 (150)
T ss_pred CeEEEEecCCCCCCHHHHHHHHHHcC-CCCEEEEEECC
Confidence 49999999988777888999888874 45777776553
No 352
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=30.93 E-value=4.5e+02 Score=24.63 Aligned_cols=70 Identities=13% Similarity=0.042 Sum_probs=47.0
Q ss_pred ccCchhHHHHHhhCCceeccccc--cccccceeeeeecceEEEEecCCCCCcCHHHHHHHHHHHhcCcchHHHHHHHHHH
Q 036520 368 HAGWGSVIETLQFGHSLVVLPLI--IDQPLNARLLVDKDLAVQVERKDDGSFTRDGIAKALRLATVSEEGEKLRVRAREA 445 (473)
Q Consensus 368 HGG~~s~~eal~~GvP~l~~P~~--~DQ~~na~~v~~~G~G~~l~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~a~~~ 445 (473)
..|.+.+..|+.+|+...++-++ .+..+....+.+.-+-+. . .-|.++|.+.+.++ + ..-|-+..+.+
T Consensus 201 yrG~~~~~~ai~~G~~~tG~TiH~v~~~~D~G~Ii~Q~~v~i~--~----~dt~~~L~~ri~~~-E---~~~~~~ai~~~ 270 (286)
T PRK06027 201 FKGAKPYHQAYERGVKLIGATAHYVTADLDEGPIIEQDVIRVD--H----RDTAEDLVRAGRDV-E---KQVLARAVRWH 270 (286)
T ss_pred CCCCCHHHHHHHCCCCeEEEEEEEEcCCCcCCCcEEEEEEEcC--C----CCCHHHHHHHHHHH-H---HHHHHHHHHHH
Confidence 35888999999999999888764 366667666655444332 2 34788898888765 3 34565555555
Q ss_pred HH
Q 036520 446 AN 447 (473)
Q Consensus 446 ~~ 447 (473)
.+
T Consensus 271 ~~ 272 (286)
T PRK06027 271 LE 272 (286)
T ss_pred Hh
Confidence 43
No 353
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=30.93 E-value=79 Score=29.12 Aligned_cols=38 Identities=29% Similarity=0.276 Sum_probs=31.9
Q ss_pred cEEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 036520 5 LHVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPK 42 (473)
Q Consensus 5 ~~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~ 42 (473)
|.|.+.-=|+-|-..-...||..|+++|++|.++=.+.
T Consensus 1 ~~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~Dp 38 (267)
T cd02032 1 MVLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCDP 38 (267)
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecCC
Confidence 56777766788999999999999999999999885543
No 354
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=30.81 E-value=87 Score=29.42 Aligned_cols=40 Identities=25% Similarity=0.282 Sum_probs=33.9
Q ss_pred cEEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCCcc
Q 036520 5 LHVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPKNI 44 (473)
Q Consensus 5 ~~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~ 44 (473)
|+|.+.-=|+-|=..-.+.||..|+++|++|.++-.+...
T Consensus 1 m~ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~DpQ~ 40 (290)
T CHL00072 1 MKLAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDPKH 40 (290)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence 6788888888899999999999999999999988655443
No 355
>PRK13059 putative lipid kinase; Reviewed
Probab=30.79 E-value=1.4e+02 Score=28.08 Aligned_cols=26 Identities=23% Similarity=0.385 Sum_probs=20.9
Q ss_pred eeeeccCchhHHHHH---h---hCCceecccc
Q 036520 364 TSLFHAGWGSVIETL---Q---FGHSLVVLPL 389 (473)
Q Consensus 364 ~~ItHGG~~s~~eal---~---~GvP~l~~P~ 389 (473)
.+|.-||-||+.|++ . .++|+-++|.
T Consensus 59 ~vi~~GGDGTv~evv~gl~~~~~~~~lgviP~ 90 (295)
T PRK13059 59 YILIAGGDGTVDNVVNAMKKLNIDLPIGILPV 90 (295)
T ss_pred EEEEECCccHHHHHHHHHHhcCCCCcEEEECC
Confidence 499999999998884 2 3588888896
No 356
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=30.69 E-value=1.8e+02 Score=27.19 Aligned_cols=26 Identities=27% Similarity=0.415 Sum_probs=18.8
Q ss_pred eeeeccCchhHHHHHhh-----CCcee-cccc
Q 036520 364 TSLFHAGWGSVIETLQF-----GHSLV-VLPL 389 (473)
Q Consensus 364 ~~ItHGG~~s~~eal~~-----GvP~l-~~P~ 389 (473)
++|.-||-||+.|++.. ..|.+ ++|.
T Consensus 60 ~ivv~GGDGTl~~v~~~l~~~~~~~~lgiiP~ 91 (293)
T TIGR00147 60 TVIAGGGDGTINEVVNALIQLDDIPALGILPL 91 (293)
T ss_pred EEEEECCCChHHHHHHHHhcCCCCCcEEEEcC
Confidence 49999999999997643 34444 4885
No 357
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=30.56 E-value=77 Score=22.75 Aligned_cols=23 Identities=30% Similarity=0.336 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCC
Q 036520 20 PFFQLSIALAKSGVKVSFISTPK 42 (473)
Q Consensus 20 p~l~la~~L~~~Gh~Vt~~~~~~ 42 (473)
-.+.+|..|++.|.+||++....
T Consensus 10 ig~E~A~~l~~~g~~vtli~~~~ 32 (80)
T PF00070_consen 10 IGIELAEALAELGKEVTLIERSD 32 (80)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSS
T ss_pred HHHHHHHHHHHhCcEEEEEeccc
Confidence 45789999999999999988654
No 358
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=30.47 E-value=55 Score=27.86 Aligned_cols=30 Identities=20% Similarity=0.298 Sum_probs=23.2
Q ss_pred CCCccChHHHHHHHHHHHhCCCeEEEEeCCCc
Q 036520 12 WSAFGHLMPFFQLSIALAKSGVKVSFISTPKN 43 (473)
Q Consensus 12 ~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~ 43 (473)
.|+.|++-. .++++|.++||+|+.++....
T Consensus 4 ~GatG~vG~--~l~~~L~~~~~~V~~~~R~~~ 33 (183)
T PF13460_consen 4 FGATGFVGR--ALAKQLLRRGHEVTALVRSPS 33 (183)
T ss_dssp ETTTSHHHH--HHHHHHHHTTSEEEEEESSGG
T ss_pred ECCCChHHH--HHHHHHHHCCCEEEEEecCch
Confidence 456666654 489999999999999986543
No 359
>PRK11823 DNA repair protein RadA; Provisional
Probab=30.44 E-value=65 Score=32.46 Aligned_cols=40 Identities=23% Similarity=0.297 Sum_probs=31.6
Q ss_pred EEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCCcccc
Q 036520 7 VVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPKNIQR 46 (473)
Q Consensus 7 vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~ 46 (473)
+++.-.++.|=..-+++++..++++|++|.+++..+..+.
T Consensus 83 ~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~q 122 (446)
T PRK11823 83 VLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQ 122 (446)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHH
Confidence 4555566888888999999999988999999997665443
No 360
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=30.39 E-value=61 Score=32.65 Aligned_cols=34 Identities=21% Similarity=0.290 Sum_probs=26.3
Q ss_pred HHHHHHHhCCCcEEEEcCCcchHHHHHHHcCCCeEEE
Q 036520 107 PFKQFVAQQSVDWIIVDVMSHWAGKIAQEYHVPLLLF 143 (473)
Q Consensus 107 ~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~ 143 (473)
++.+.+++.+||++|... .+..+|+++|||++.+
T Consensus 378 e~~~~i~~~~pdllig~s---~~~~~A~~lgip~~~~ 411 (443)
T TIGR01862 378 EFEEILEKLKPDIIFSGI---KEKFVAQKLGVPYRQM 411 (443)
T ss_pred HHHHHHHhcCCCEEEEcC---cchhhhhhcCCCeEec
Confidence 344556777999999875 3467899999999875
No 361
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=30.27 E-value=25 Score=30.17 Aligned_cols=32 Identities=9% Similarity=0.180 Sum_probs=22.3
Q ss_pred hCCCcceeeeccCchhHHHHHhhCCceeccccc
Q 036520 358 AHPSIGTSLFHAGWGSVIETLQFGHSLVVLPLI 390 (473)
Q Consensus 358 ~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P~~ 390 (473)
.+..++++|++||......... ++|+|-+|..
T Consensus 31 ~~~g~dViIsRG~ta~~lr~~~-~iPVV~I~~s 62 (176)
T PF06506_consen 31 ESEGADVIISRGGTAELLRKHV-SIPVVEIPIS 62 (176)
T ss_dssp TTTT-SEEEEEHHHHHHHHCC--SS-EEEE---
T ss_pred HhcCCeEEEECCHHHHHHHHhC-CCCEEEECCC
Confidence 4456666999999999998887 9999999974
No 362
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=30.20 E-value=95 Score=27.17 Aligned_cols=38 Identities=18% Similarity=0.327 Sum_probs=28.8
Q ss_pred ccEEEEecC--CCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 036520 4 KLHVVMLPW--SAFGHLMPFFQLSIALAKSGVKVSFISTP 41 (473)
Q Consensus 4 ~~~vl~~~~--~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 41 (473)
.+|++.++. ++.|=..-...||..|+++|++|.++-.+
T Consensus 16 ~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D 55 (204)
T TIGR01007 16 EIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGD 55 (204)
T ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 366655554 35577778999999999999999887543
No 363
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=30.10 E-value=73 Score=28.47 Aligned_cols=38 Identities=18% Similarity=0.152 Sum_probs=27.0
Q ss_pred HHHHhCCCcEEEEcCCc--chHHHHHHHcCCCeEEEecch
Q 036520 110 QFVAQQSVDWIIVDVMS--HWAGKIAQEYHVPLLLFSAFS 147 (473)
Q Consensus 110 ~ll~~~~pD~vI~D~~~--~~~~~~A~~lgiP~v~~~~~~ 147 (473)
+.+...+||+||..... .....-....+||++.+....
T Consensus 54 E~i~~l~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~ 93 (238)
T PF01497_consen 54 EAILALKPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSS 93 (238)
T ss_dssp HHHHHT--SEEEEETTSSCHHHHHHHHHTTSEEEEESSTT
T ss_pred HHHHhCCCCEEEEeccccchHHHHHHhcccceEEEeeccc
Confidence 44566799999988655 455566778899999987755
No 364
>PRK09165 replicative DNA helicase; Provisional
Probab=30.09 E-value=1.6e+02 Score=30.25 Aligned_cols=41 Identities=20% Similarity=0.299 Sum_probs=31.1
Q ss_pred EEEecCCCccChHHHHHHHHHHHhC---------------CCeEEEEeCCCccccC
Q 036520 7 VVMLPWSAFGHLMPFFQLSIALAKS---------------GVKVSFISTPKNIQRL 47 (473)
Q Consensus 7 vl~~~~~~~gH~~p~l~la~~L~~~---------------Gh~Vt~~~~~~~~~~~ 47 (473)
+++...|+.|=..-++.+|...+.+ |..|.|++-....+.+
T Consensus 220 ivIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql 275 (497)
T PRK09165 220 IILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQL 275 (497)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHH
Confidence 4667777889888899998888754 7889998876655443
No 365
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=29.79 E-value=96 Score=22.92 Aligned_cols=35 Identities=23% Similarity=0.207 Sum_probs=27.7
Q ss_pred cEEEEecCCCc--cChHHHHHHHHHHHhCCCeEEEEe
Q 036520 5 LHVVMLPWSAF--GHLMPFFQLSIALAKSGVKVSFIS 39 (473)
Q Consensus 5 ~~vl~~~~~~~--gH~~p~l~la~~L~~~Gh~Vt~~~ 39 (473)
-+|+++|.... .+..-...++..|...|..|.+-.
T Consensus 2 ~qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~ 38 (94)
T cd00861 2 FDVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDD 38 (94)
T ss_pred eEEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEEC
Confidence 46888887653 466678999999999999998754
No 366
>PRK08163 salicylate hydroxylase; Provisional
Probab=29.64 E-value=61 Score=31.82 Aligned_cols=36 Identities=25% Similarity=0.430 Sum_probs=28.7
Q ss_pred CCCccEEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 036520 1 MARKLHVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTP 41 (473)
Q Consensus 1 m~~~~~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 41 (473)
|+.+++|+|+=.+-.| +.+|..|+++|++|+++-..
T Consensus 1 ~~~~~~V~IvGaGiaG-----l~~A~~L~~~g~~v~v~Er~ 36 (396)
T PRK08163 1 MTKVTPVLIVGGGIGG-----LAAALALARQGIKVKLLEQA 36 (396)
T ss_pred CCCCCeEEEECCcHHH-----HHHHHHHHhCCCcEEEEeeC
Confidence 7888899988776544 67788899999999998643
No 367
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=29.57 E-value=1.4e+02 Score=27.97 Aligned_cols=89 Identities=17% Similarity=0.216 Sum_probs=55.6
Q ss_pred hhhhccccCCCCCcEEEEeecCcccCCHHHHHHHHHHHhcCCCCEEEEEcCCCCCCCccccCchhhhhhcCCCceEEecc
Q 036520 271 SKIFQWLDEQKPRSVVFVGFGSECKLSKDQVYEIAYGLELSGLPFLWALRKPEWATDDVDALPLGFADTIRGKGIVSIGW 350 (473)
Q Consensus 271 ~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~ 350 (473)
++..++|.+... ++++++|+.. ..-..+...|.+.|.++....... . .+
T Consensus 121 ~~av~~L~~A~r--I~~~G~g~S~----~vA~~~~~~l~~ig~~~~~~~d~~---------~----------------~~ 169 (281)
T COG1737 121 ERAVELLAKARR--IYFFGLGSSG----LVASDLAYKLMRIGLNVVALSDTH---------G----------------QL 169 (281)
T ss_pred HHHHHHHHcCCe--EEEEEechhH----HHHHHHHHHHHHcCCceeEecchH---------H----------------HH
Confidence 345556665543 7888877765 333445556667777766654321 0 11
Q ss_pred cchHHHhhCCCcceeeeccCch-----hHHHHHhhCCceecccccc
Q 036520 351 APQLEILAHPSIGTSLFHAGWG-----SVIETLQFGHSLVVLPLII 391 (473)
Q Consensus 351 ~pq~~ll~~~~~~~~ItHGG~~-----s~~eal~~GvP~l~~P~~~ 391 (473)
.+...+..-++-++|+|.|.. .+..|-..|+|+|.+--..
T Consensus 170 -~~~~~~~~~Dv~i~iS~sG~t~e~i~~a~~ak~~ga~vIaiT~~~ 214 (281)
T COG1737 170 -MQLALLTPGDVVIAISFSGYTREIVEAAELAKERGAKVIAITDSA 214 (281)
T ss_pred -HHHHhCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEEEEcCCC
Confidence 245555566666699999975 4455678999999987653
No 368
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=29.49 E-value=59 Score=25.39 Aligned_cols=40 Identities=18% Similarity=0.184 Sum_probs=29.3
Q ss_pred HHHhhCCCcceeeecc---CchhHHHH---HhhCCceecccccccc
Q 036520 354 LEILAHPSIGTSLFHA---GWGSVIET---LQFGHSLVVLPLIIDQ 393 (473)
Q Consensus 354 ~~ll~~~~~~~~ItHG---G~~s~~ea---l~~GvP~l~~P~~~DQ 393 (473)
...+..|++-+++-.| +.||..|. ...|+|++++-.-..+
T Consensus 56 ~~~i~~~D~via~l~~~~~d~Gt~~ElG~A~algkpv~~~~~d~~~ 101 (113)
T PF05014_consen 56 LEGIRECDIVIANLDGFRPDSGTAFELGYAYALGKPVILLTEDDRP 101 (113)
T ss_dssp HHHHHHSSEEEEEECSSS--HHHHHHHHHHHHTTSEEEEEECCCCT
T ss_pred HHHHHHCCEEEEECCCCCCCCcHHHHHHHHHHCCCEEEEEEcCCcc
Confidence 5666778886666666 88999995 7789999998654443
No 369
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=29.46 E-value=57 Score=26.54 Aligned_cols=34 Identities=24% Similarity=0.241 Sum_probs=25.2
Q ss_pred CccChHHHHHHHHHHHhCCCeEEEEeCCCccccC
Q 036520 14 AFGHLMPFFQLSIALAKSGVKVSFISTPKNIQRL 47 (473)
Q Consensus 14 ~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~ 47 (473)
..--+--.+=++..|.++||+|+++.++.....+
T Consensus 9 ~Pvq~p~alYl~~~Lk~~G~~v~Va~npAA~kLl 42 (139)
T PF09001_consen 9 VPVQTPSALYLSYKLKKKGFEVVVAGNPAALKLL 42 (139)
T ss_dssp STTHHHHHHHHHHHHHCTTEEEEEEE-HHHHHHH
T ss_pred CcchhHHHHHHHHHHHhcCCeEEEecCHHHHhHh
Confidence 3344556778899999999999999988765444
No 370
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=29.46 E-value=1.4e+02 Score=25.30 Aligned_cols=46 Identities=7% Similarity=0.109 Sum_probs=32.5
Q ss_pred HHhhhhhHHHHHHHhCCCcEEEEcCCcch-------------H--HHHHHHcCCCeEEEec
Q 036520 100 AYDLLQHPFKQFVAQQSVDWIIVDVMSHW-------------A--GKIAQEYHVPLLLFSA 145 (473)
Q Consensus 100 ~~~~~~~~l~~ll~~~~pD~vI~D~~~~~-------------~--~~~A~~lgiP~v~~~~ 145 (473)
......+.+.++|++.+||.++.+..++. | ..++...|||..-+.+
T Consensus 45 Rl~~I~~~l~~~i~~~~Pd~vaiE~~f~~~n~~sa~~l~~arGvi~la~~~~~ipv~ey~P 105 (164)
T PRK00039 45 RLKQIYDGLSELIDEYQPDEVAIEEVFFNKNPQSALKLGQARGVAILAAAQRGLPVAEYTP 105 (164)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEehhhhccChHHHHHHHHHHHHHHHHHHHcCCCEEEECH
Confidence 34456678899999999999887743221 1 1367788999887744
No 371
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=29.39 E-value=83 Score=28.69 Aligned_cols=36 Identities=11% Similarity=0.153 Sum_probs=23.8
Q ss_pred HHHHhCCCcEEEEcCCcch--HHH-HHHHcCCCeEEEec
Q 036520 110 QFVAQQSVDWIIVDVMSHW--AGK-IAQEYHVPLLLFSA 145 (473)
Q Consensus 110 ~ll~~~~pD~vI~D~~~~~--~~~-~A~~lgiP~v~~~~ 145 (473)
+.|.+.+||+||....... ... +.+.+|+|++.+..
T Consensus 68 E~i~~l~PDLIi~~~~~~~~~~~~~l~~~~gipvv~~~~ 106 (262)
T cd01147 68 EKIAALKPDVVIDVGSDDPTSIADDLQKKTGIPVVVLDG 106 (262)
T ss_pred HHHHhcCCCEEEEecCCccchhHHHHHHhhCCCEEEEec
Confidence 4456679999998754432 122 33458999988764
No 372
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=29.36 E-value=3.3e+02 Score=25.40 Aligned_cols=100 Identities=17% Similarity=0.168 Sum_probs=49.3
Q ss_pred CcEEEEeecCcccCCHHHHHHHHHHH----hcCCCCEEEEEcCCCCCCCccccCchhhhhhcCCCceEEecccch--HHH
Q 036520 283 RSVVFVGFGSECKLSKDQVYEIAYGL----ELSGLPFLWALRKPEWATDDVDALPLGFADTIRGKGIVSIGWAPQ--LEI 356 (473)
Q Consensus 283 ~~~V~vs~Gs~~~~~~~~~~~~~~al----~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq--~~l 356 (473)
++.|.+++......+.+....+++++ ++.+.++++.--... . +...-....+....+..++...-|+ ..+
T Consensus 172 ~~~i~i~~r~~~~~~~~~~~~l~~~l~~l~~~~g~~v~~i~~~~~-~---D~~~~~~l~~~~~~~~~i~~~~~~~e~~~~ 247 (298)
T TIGR03609 172 EPVIVVSLRPWPLLDVSRLLRLLRALDRLQRDTGAFVLFLPFQQP-Q---DLPLARALRDQLLGPAEVLSPLDPEELLGL 247 (298)
T ss_pred CCeEEEEECCCCcCCHHHHHHHHHHHHHHHHhhCCeEEEEeCCcc-h---hHHHHHHHHHhcCCCcEEEecCCHHHHHHH
Confidence 44788887654333333333444333 334777766542211 0 1111112222222212222222333 456
Q ss_pred hhCCCcceeeeccCchhHHHHHhhCCceecccc
Q 036520 357 LAHPSIGTSLFHAGWGSVIETLQFGHSLVVLPL 389 (473)
Q Consensus 357 l~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P~ 389 (473)
++++++ +|+-= +=++.-|+.+|||.++++.
T Consensus 248 i~~~~~--vI~~R-lH~~I~A~~~gvP~i~i~y 277 (298)
T TIGR03609 248 FASARL--VIGMR-LHALILAAAAGVPFVALSY 277 (298)
T ss_pred HhhCCE--EEEec-hHHHHHHHHcCCCEEEeec
Confidence 777776 88743 2346678889999998854
No 373
>COG3195 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.26 E-value=68 Score=26.94 Aligned_cols=76 Identities=16% Similarity=0.051 Sum_probs=55.3
Q ss_pred hhHHHHHhhCCceeccccc-cccccceeeeeecceEEEEecCCCCCcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHhc
Q 036520 372 GSVIETLQFGHSLVVLPLI-IDQPLNARLLVDKDLAVQVERKDDGSFTRDGIAKALRLATVSEEGEKLRVRAREAANTFN 450 (473)
Q Consensus 372 ~s~~eal~~GvP~l~~P~~-~DQ~~na~~v~~~G~G~~l~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~ 450 (473)
-|+.|--.+|.=.+.=--+ -=+-.|++..++-|+=..+-.+ ..|.++|.++..+=|+|.+..++++.+.++.++..
T Consensus 88 ~S~~EQasAGLd~Ls~~E~a~f~~LN~aY~~rFgfPfI~aVk---g~~k~~Il~a~~~Rl~n~~e~E~~tAl~eI~rIA~ 164 (176)
T COG3195 88 ESTSEQASAGLDRLSPEEFARFTELNAAYVERFGFPFIIAVK---GNTKDTILAAFERRLDNDREQEFATALAEIERIAL 164 (176)
T ss_pred hhHHHHHhcCcccCCHHHHHHHHHHHHHHHHhcCCceEEeec---CCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 4666666666544321111 1245688889999998888776 67899999999999997778888888888877754
No 374
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=29.16 E-value=1e+02 Score=24.08 Aligned_cols=67 Identities=13% Similarity=0.166 Sum_probs=40.2
Q ss_pred HHHHHHHHhcCCCCEEEEEcCCCCCCCccccCchhhhhhcCCCceEEe------cccchHHHh---hCCCcceeeeccCc
Q 036520 301 VYEIAYGLELSGLPFLWALRKPEWATDDVDALPLGFADTIRGKGIVSI------GWAPQLEIL---AHPSIGTSLFHAGW 371 (473)
Q Consensus 301 ~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~------~~~pq~~ll---~~~~~~~~ItHGG~ 371 (473)
-.+++.++++.|.+.+.+...++.. .+ .....++-+... .|+....++ .+..+ ...|+|+
T Consensus 14 a~r~~ra~r~~Gi~tv~v~s~~d~~------s~---~~~~ad~~~~~~~~~~~~~yl~~e~I~~ia~~~g~--~~i~pGy 82 (110)
T PF00289_consen 14 AVRIIRALRELGIETVAVNSNPDTV------ST---HVDMADEAYFEPPGPSPESYLNIEAIIDIARKEGA--DAIHPGY 82 (110)
T ss_dssp HHHHHHHHHHTTSEEEEEEEGGGTT------GH---HHHHSSEEEEEESSSGGGTTTSHHHHHHHHHHTTE--SEEESTS
T ss_pred HHHHHHHHHHhCCcceeccCchhcc------cc---cccccccceecCcchhhhhhccHHHHhhHhhhhcC--ccccccc
Confidence 5678899999999999998764321 00 001111122221 466654444 44455 8899999
Q ss_pred hhHHHHH
Q 036520 372 GSVIETL 378 (473)
Q Consensus 372 ~s~~eal 378 (473)
|-..|..
T Consensus 83 g~lse~~ 89 (110)
T PF00289_consen 83 GFLSENA 89 (110)
T ss_dssp STTTTHH
T ss_pred chhHHHH
Confidence 9777663
No 375
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=29.10 E-value=3.5e+02 Score=26.74 Aligned_cols=91 Identities=18% Similarity=0.145 Sum_probs=59.5
Q ss_pred CCcEEEEeecCcccCCHHHHHHHHHHHhcCCCCEEEEEcCCCCCCCccccCchhhhhhcCCCceE-Eecccch---HHHh
Q 036520 282 PRSVVFVGFGSECKLSKDQVYEIAYGLELSGLPFLWALRKPEWATDDVDALPLGFADTIRGKGIV-SIGWAPQ---LEIL 357 (473)
Q Consensus 282 ~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~-~~~~~pq---~~ll 357 (473)
.|+.|-+|+ +......+..+.+.|++.|+.+++-...+... ..+++-+.++.+. +.+.... ..+.
T Consensus 184 ~kp~I~iTm---fGvTTp~V~~~~~~Le~~G~Ev~VFHAtG~GG--------~aME~Li~~G~~~~VlDlTttEl~d~l~ 252 (403)
T PF06792_consen 184 DKPLIGITM---FGVTTPCVDAIRERLEEEGYEVLVFHATGTGG--------RAMERLIREGQFDGVLDLTTTELADELF 252 (403)
T ss_pred CCcEEEEEC---CCCcHHHHHHHHHHHHhcCCeEEEEcCCCCch--------HHHHHHHHcCCcEEEEECcHHHHHHHHh
Confidence 456887764 44566788888889999999988876654322 2344444444333 3344333 1222
Q ss_pred hCCCcceeeeccCchhHHHHHhhCCceecccc
Q 036520 358 AHPSIGTSLFHAGWGSVIETLQFGHSLVVLPL 389 (473)
Q Consensus 358 ~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P~ 389 (473)
+ =|..+|-+=.-.|...|+|+|+.|=
T Consensus 253 -----G-Gv~sagp~Rl~AA~~~GIP~Vvs~G 278 (403)
T PF06792_consen 253 -----G-GVLSAGPDRLEAAARAGIPQVVSPG 278 (403)
T ss_pred -----C-CCCCCCchHHHHHHHcCCCEEEecC
Confidence 1 3666788888899999999999994
No 376
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=28.89 E-value=1.2e+02 Score=30.32 Aligned_cols=40 Identities=20% Similarity=0.193 Sum_probs=32.4
Q ss_pred EEEEecCCCccChHHHHHHHHHHH-hCCCeEEEEeCCCccc
Q 036520 6 HVVMLPWSAFGHLMPFFQLSIALA-KSGVKVSFISTPKNIQ 45 (473)
Q Consensus 6 ~vl~~~~~~~gH~~p~l~la~~L~-~~Gh~Vt~~~~~~~~~ 45 (473)
-++++-.++.|=..-...||..|. ++|..|.+++.+.+..
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~ 141 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRP 141 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccch
Confidence 345566668899999999999997 5799999999876544
No 377
>PRK07773 replicative DNA helicase; Validated
Probab=28.89 E-value=1.2e+02 Score=33.68 Aligned_cols=41 Identities=12% Similarity=0.152 Sum_probs=32.3
Q ss_pred EEEecCCCccChHHHHHHHHHHHhC-CCeEEEEeCCCccccC
Q 036520 7 VVMLPWSAFGHLMPFFQLSIALAKS-GVKVSFISTPKNIQRL 47 (473)
Q Consensus 7 vl~~~~~~~gH~~p~l~la~~L~~~-Gh~Vt~~~~~~~~~~~ 47 (473)
+++..-|+.|=..-++.+|...+.+ |..|.|++-+...+.+
T Consensus 220 ivIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~ql 261 (886)
T PRK07773 220 IIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQL 261 (886)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHHH
Confidence 5667778999999999999998765 8899999876654443
No 378
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=28.86 E-value=42 Score=33.09 Aligned_cols=43 Identities=14% Similarity=0.146 Sum_probs=33.4
Q ss_pred cEEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCCccccCC
Q 036520 5 LHVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPKNIQRLP 48 (473)
Q Consensus 5 ~~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~ 48 (473)
+||++...|+.| ..-...+.+.|.+.|++|.++.++...+++.
T Consensus 4 k~IllgiTGSia-a~~~~~ll~~L~~~g~~V~vv~T~~A~~fv~ 46 (390)
T TIGR00521 4 KKILLGVTGGIA-AYKTVELVRELVRQGAEVKVIMTEAAKKFIT 46 (390)
T ss_pred CEEEEEEeCHHH-HHHHHHHHHHHHhCCCEEEEEECHhHHHHHH
Confidence 478777665444 4668999999999999999999887665553
No 379
>COG3140 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.78 E-value=1.8e+02 Score=19.34 Aligned_cols=34 Identities=9% Similarity=0.052 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHh
Q 036520 436 EKLRVRAREAANTFNDKKLHDDYSVRFVEYLKIN 469 (473)
Q Consensus 436 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (473)
+.-.+.+.++++.+.++-++-+++..+...+++.
T Consensus 11 eqQQ~AVE~Iq~lMaeGmSsGEAIa~VA~elRe~ 44 (60)
T COG3140 11 EQQQKAVERIQELMAEGMSSGEAIALVAQELREN 44 (60)
T ss_pred HHHHHHHHHHHHHHHccccchhHHHHHHHHHHHH
Confidence 4445666667777776666667777666666553
No 380
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=28.54 E-value=9.7 Score=20.47 Aligned_cols=17 Identities=24% Similarity=0.587 Sum_probs=13.1
Q ss_pred CchhHHHHHhhCCceec
Q 036520 370 GWGSVIETLQFGHSLVV 386 (473)
Q Consensus 370 G~~s~~eal~~GvP~l~ 386 (473)
|.|+++..++.|.|.++
T Consensus 1 gIGa~Lkvla~~LP~lI 17 (26)
T PF01372_consen 1 GIGAILKVLATGLPTLI 17 (26)
T ss_dssp -HHHHHHHHHTHHHHHH
T ss_pred ChhHHHHHHHhcChHHH
Confidence 67888888988888764
No 381
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=28.54 E-value=93 Score=28.64 Aligned_cols=38 Identities=24% Similarity=0.236 Sum_probs=30.7
Q ss_pred cEEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 036520 5 LHVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPK 42 (473)
Q Consensus 5 ~~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~ 42 (473)
|+|.+.-=|+-|=..-...||..|+++|++|.++=-+.
T Consensus 1 ~~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD~D~ 38 (268)
T TIGR01281 1 MILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIGCDP 38 (268)
T ss_pred CEEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEecCc
Confidence 56777755677888999999999999999999884433
No 382
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=28.49 E-value=1.9e+02 Score=30.26 Aligned_cols=27 Identities=11% Similarity=0.198 Sum_probs=21.7
Q ss_pred cceeeeccCch------hHHHHHhhCCceeccc
Q 036520 362 IGTSLFHAGWG------SVIETLQFGHSLVVLP 388 (473)
Q Consensus 362 ~~~~ItHGG~~------s~~eal~~GvP~l~~P 388 (473)
.+++++|.|-| .+.+|...++|+|++.
T Consensus 65 ~gv~~~t~GPG~~N~~~gla~A~~~~~Pvl~I~ 97 (579)
T TIGR03457 65 MSMVIGQNGPGVTNCVTAIAAAYWAHTPVVIVT 97 (579)
T ss_pred CEEEEECCCchHHHHHHHHHHHhhcCCCEEEEe
Confidence 44488888754 6779999999999995
No 383
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=28.48 E-value=70 Score=32.54 Aligned_cols=33 Identities=15% Similarity=0.161 Sum_probs=26.2
Q ss_pred HHHHHHHhCCCcEEEEcCCcchHHHHHHHcCCCeEE
Q 036520 107 PFKQFVAQQSVDWIIVDVMSHWAGKIAQEYHVPLLL 142 (473)
Q Consensus 107 ~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~ 142 (473)
++.+++++.+||++|... ....+|+++|||++.
T Consensus 384 e~~~~i~~~~pDliig~s---~~~~~a~k~giP~~~ 416 (475)
T PRK14478 384 ELYKMLKEAKADIMLSGG---RSQFIALKAGMPWLD 416 (475)
T ss_pred HHHHHHhhcCCCEEEecC---chhhhhhhcCCCEEE
Confidence 455667778999999973 456889999999984
No 384
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=28.46 E-value=66 Score=30.18 Aligned_cols=31 Identities=26% Similarity=0.436 Sum_probs=23.4
Q ss_pred cEEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 036520 5 LHVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFIST 40 (473)
Q Consensus 5 ~~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~ 40 (473)
|||+++=.|..| ..+|..|+++||+|+++..
T Consensus 1 m~I~IiG~G~~G-----~~~a~~L~~~g~~V~~~~r 31 (304)
T PRK06522 1 MKIAILGAGAIG-----GLFGAALAQAGHDVTLVAR 31 (304)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCeEEEEEC
Confidence 567776555444 5678889999999999986
No 385
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=28.39 E-value=3.7e+02 Score=22.83 Aligned_cols=87 Identities=15% Similarity=0.132 Sum_probs=51.2
Q ss_pred ccEEEEcCCchhhhHHHHHHHhhcCCCeEEeeccCCCCCCCCCCCCchhhhhccccCCCCCcEEEEeecCcccCCHHHHH
Q 036520 223 CQAMAIRSCPEFEGEYLNLLEKLTGKPVIPVGLLTPEPNSAKGRDHQISKIFQWLDEQKPRSVVFVGFGSECKLSKDQVY 302 (473)
Q Consensus 223 ~~~~~~~s~~~le~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~ 302 (473)
....++.+.++.-......++...| ++..+|-.+.... +.+.+++.+.+....++ +|+|++|+-- .+ .
T Consensus 49 ~~ifllG~~~~~~~~~~~~l~~~yP-~l~ivg~~~g~f~-----~~~~~~i~~~I~~~~pd-iv~vglG~Pk---QE--~ 116 (172)
T PF03808_consen 49 KRIFLLGGSEEVLEKAAANLRRRYP-GLRIVGYHHGYFD-----EEEEEAIINRINASGPD-IVFVGLGAPK---QE--R 116 (172)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHHCC-CeEEEEecCCCCC-----hhhHHHHHHHHHHcCCC-EEEEECCCCH---HH--H
Confidence 4566777776655555566666664 5777775443321 33566788888766554 9999999632 12 2
Q ss_pred HHHHHHhcCCCCEEEEEcC
Q 036520 303 EIAYGLELSGLPFLWALRK 321 (473)
Q Consensus 303 ~~~~al~~~~~~~i~~~~~ 321 (473)
-+.+-..+.+..++..+++
T Consensus 117 ~~~~~~~~l~~~v~i~vG~ 135 (172)
T PF03808_consen 117 WIARHRQRLPAGVIIGVGG 135 (172)
T ss_pred HHHHHHHHCCCCEEEEECc
Confidence 2333334566665555554
No 386
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=28.39 E-value=3.6e+02 Score=22.68 Aligned_cols=132 Identities=13% Similarity=0.096 Sum_probs=70.0
Q ss_pred EeecCcccCCHHHHHHHHHHHhcCCCCEEEEEcCCCCCCCccccCchhhhhhcCCCceEEecccchHHHhhCCCcceeee
Q 036520 288 VGFGSECKLSKDQVYEIAYGLELSGLPFLWALRKPEWATDDVDALPLGFADTIRGKGIVSIGWAPQLEILAHPSIGTSLF 367 (473)
Q Consensus 288 vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~It 367 (473)
|-+||.. +....+++...|+..|.++-+.+.+. ...|+.+.+.. -+ ...-.+++||.
T Consensus 3 IimGS~S--D~~~~~~a~~~L~~~gi~~dv~V~Sa-------HRtp~~~~~~~-----------~~---a~~~g~~viIa 59 (156)
T TIGR01162 3 IIMGSDS--DLPTMKKAADILEEFGIPYELRVVSA-------HRTPELMLEYA-----------KE---AEERGIKVIIA 59 (156)
T ss_pred EEECcHh--hHHHHHHHHHHHHHcCCCeEEEEECc-------ccCHHHHHHHH-----------HH---HHHCCCeEEEE
Confidence 3356553 67778888888888887755555432 22343222211 11 00011234888
Q ss_pred ccCchhHHHHH---hhCCceecccccccccccee----eeee--cceE--EEEecCCCCCcCHHHHHHHHHHHhcCcchH
Q 036520 368 HAGWGSVIETL---QFGHSLVVLPLIIDQPLNAR----LLVD--KDLA--VQVERKDDGSFTRDGIAKALRLATVSEEGE 436 (473)
Q Consensus 368 HGG~~s~~eal---~~GvP~l~~P~~~DQ~~na~----~v~~--~G~G--~~l~~~~~~~~t~~~l~~~i~~ll~~~~~~ 436 (473)
=+|...-+-.+ ..-+|+|.+|.... ..+.. -+.+ .|+. ..--. +..++..++..|-.+ . ++
T Consensus 60 ~AG~aa~Lpgvva~~t~~PVIgvP~~~~-~l~G~daLlS~vqmP~gvpvatv~I~---~~~nAa~~AaqIl~~-~---d~ 131 (156)
T TIGR01162 60 GAGGAAHLPGMVAALTPLPVIGVPVPSK-ALSGLDSLLSIVQMPSGVPVATVAIG---NAGNAALLAAQILGI-K---DP 131 (156)
T ss_pred eCCccchhHHHHHhccCCCEEEecCCcc-CCCCHHHHHHHhcCCCCCeeEEEEcC---ChhHHHHHHHHHHcC-C---CH
Confidence 88864333332 34589999998432 11110 1222 2533 22222 245666666555333 3 58
Q ss_pred HHHHHHHHHHHHhc
Q 036520 437 KLRVRAREAANTFN 450 (473)
Q Consensus 437 ~~~~~a~~~~~~~~ 450 (473)
+++++.+..+..++
T Consensus 132 ~l~~kl~~~r~~~~ 145 (156)
T TIGR01162 132 ELAEKLKEYRENQK 145 (156)
T ss_pred HHHHHHHHHHHHHH
Confidence 89999888887765
No 387
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=28.26 E-value=1.3e+02 Score=25.76 Aligned_cols=106 Identities=22% Similarity=0.246 Sum_probs=62.5
Q ss_pred CCcEEEEeecCcccCCHHHHHHHHHHHhcCCCCEEEEEcCCCCCCCccccCchhhhhhcCCCceEEecccchHHHhhCCC
Q 036520 282 PRSVVFVGFGSECKLSKDQVYEIAYGLELSGLPFLWALRKPEWATDDVDALPLGFADTIRGKGIVSIGWAPQLEILAHPS 361 (473)
Q Consensus 282 ~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~ll~~~~ 361 (473)
.+.+-.+++|.++ +.+++-++..|.+++..-+.... .+ .+ ...++ .+.+..++++.++
T Consensus 36 g~tvgIiG~G~IG-------~~vA~~l~~fG~~V~~~d~~~~~-------~~-~~----~~~~~---~~~~l~ell~~aD 93 (178)
T PF02826_consen 36 GKTVGIIGYGRIG-------RAVARRLKAFGMRVIGYDRSPKP-------EE-GA----DEFGV---EYVSLDELLAQAD 93 (178)
T ss_dssp TSEEEEESTSHHH-------HHHHHHHHHTT-EEEEEESSCHH-------HH-HH----HHTTE---EESSHHHHHHH-S
T ss_pred CCEEEEEEEcCCc-------CeEeeeeecCCceeEEecccCCh-------hh-hc----ccccc---eeeehhhhcchhh
Confidence 3558889999988 66777777788887776554311 00 00 00122 5567889999999
Q ss_pred cceeeeccCchhHHHHHhhCCceeccccccccccceeeeeecceE-EEEecCCCCCcCHHHHHHHHH
Q 036520 362 IGTSLFHAGWGSVIETLQFGHSLVVLPLIIDQPLNARLLVDKDLA-VQVERKDDGSFTRDGIAKALR 427 (473)
Q Consensus 362 ~~~~ItHGG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G-~~l~~~~~~~~t~~~l~~~i~ 427 (473)
+ ++.|.-.+. ...+..|+..+..++=| +-+.....+.++.+.|.++++
T Consensus 94 i--v~~~~plt~----------------~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~ 142 (178)
T PF02826_consen 94 I--VSLHLPLTP----------------ETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALE 142 (178)
T ss_dssp E--EEE-SSSST----------------TTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHH
T ss_pred h--hhhhhcccc----------------ccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHh
Confidence 8 877763321 23667788888777544 334443223567777777765
No 388
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=28.11 E-value=1.1e+02 Score=28.60 Aligned_cols=86 Identities=13% Similarity=0.150 Sum_probs=47.2
Q ss_pred CCccEEEEecCCCccChHHHHHHHHHHHhC--CCeEEEEeCCC-ccccCCCCCCCcccCCCeEEEEecCCccccccccCC
Q 036520 2 ARKLHVVMLPWSAFGHLMPFFQLSIALAKS--GVKVSFISTPK-NIQRLPKPAPESEVAALINFVEFPLPASAALDDKLL 78 (473)
Q Consensus 2 ~~~~~vl~~~~~~~gH~~p~l~la~~L~~~--Gh~Vt~~~~~~-~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~ 78 (473)
.+++||+++.++..+.+..++ +..... +++|.++.+.. ....+.. ..+|.+..++ ..
T Consensus 87 ~~~~ri~vl~Sg~gsnl~al~---~~~~~~~~~~~i~~visn~~~~~~lA~-------~~gIp~~~~~----------~~ 146 (286)
T PRK06027 87 AERKRVVILVSKEDHCLGDLL---WRWRSGELPVEIAAVISNHDDLRSLVE-------RFGIPFHHVP----------VT 146 (286)
T ss_pred ccCcEEEEEEcCCCCCHHHHH---HHHHcCCCCcEEEEEEEcChhHHHHHH-------HhCCCEEEec----------cC
Confidence 367899999888754444433 333332 68888765533 2221111 1366666654 11
Q ss_pred CCCCCccCCCCChhhHHHHHHHHhhhhhHHHHHHHhCCCcEEEEcCCc
Q 036520 79 LPEGAEATVDIPSENIQYLKIAYDLLQHPFKQFVAQQSVDWIIVDVMS 126 (473)
Q Consensus 79 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~ 126 (473)
. . . .......+.+.+++.+||+||.-.+.
T Consensus 147 -~--~----~------------~~~~~~~~~~~l~~~~~Dlivlagy~ 175 (286)
T PRK06027 147 -K--E----T------------KAEAEARLLELIDEYQPDLVVLARYM 175 (286)
T ss_pred -c--c----c------------cchhHHHHHHHHHHhCCCEEEEecch
Confidence 0 0 0 00123346677888999998877544
No 389
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=28.11 E-value=79 Score=30.19 Aligned_cols=33 Identities=18% Similarity=0.184 Sum_probs=24.3
Q ss_pred CCcEEE-EcCCc-chHHHHHHHcCCCeEEEecchh
Q 036520 116 SVDWII-VDVMS-HWAGKIAQEYHVPLLLFSAFSA 148 (473)
Q Consensus 116 ~pD~vI-~D~~~-~~~~~~A~~lgiP~v~~~~~~~ 148 (473)
.||+|| .|... ..++.=|.++|||.|.+.-+.+
T Consensus 152 ~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn~ 186 (326)
T PRK12311 152 LPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTNC 186 (326)
T ss_pred CCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCCC
Confidence 699655 56543 5677779999999999866443
No 390
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=28.08 E-value=1.2e+02 Score=25.57 Aligned_cols=42 Identities=14% Similarity=0.180 Sum_probs=31.9
Q ss_pred hhhHHHHHHHhCCCcEEEEcCCc---chHHHHHHHcCCCeEEEec
Q 036520 104 LQHPFKQFVAQQSVDWIIVDVMS---HWAGKIAQEYHVPLLLFSA 145 (473)
Q Consensus 104 ~~~~l~~ll~~~~pD~vI~D~~~---~~~~~~A~~lgiP~v~~~~ 145 (473)
..+.+.+++++.+||+|+.-.-. -.+..+|.++|.|+++-..
T Consensus 71 ~a~al~~~i~~~~p~~Vl~~~t~~g~~la~rlAa~L~~~~vtdv~ 115 (168)
T cd01715 71 YAPALVALAKKEKPSHILAGATSFGKDLAPRVAAKLDVGLISDVT 115 (168)
T ss_pred HHHHHHHHHHhcCCCEEEECCCccccchHHHHHHHhCCCceeeEE
Confidence 34566777788889999977533 4677899999999997654
No 391
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=27.98 E-value=1.1e+02 Score=31.05 Aligned_cols=55 Identities=16% Similarity=0.066 Sum_probs=30.6
Q ss_pred hhHHHHHHHHhhhhhHHHHHHHhCCCcEEEEcCCc--chHHHHHHHcCCCeEEEecch
Q 036520 92 ENIQYLKIAYDLLQHPFKQFVAQQSVDWIIVDVMS--HWAGKIAQEYHVPLLLFSAFS 147 (473)
Q Consensus 92 ~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~--~~~~~~A~~lgiP~v~~~~~~ 147 (473)
+.|.++..........+.+.+ ...||+|+...-. ..|..+++++|||-..+..+.
T Consensus 378 ~lWPyLe~fa~d~~~~i~~e~-~~~PdlI~GnYsDgnlvA~LLs~~lgv~~~~iaHsL 434 (550)
T PF00862_consen 378 DLWPYLEEFADDAEREILAEL-QGKPDLIIGNYSDGNLVASLLSRKLGVTQCFIAHSL 434 (550)
T ss_dssp G-GGGHHHHHHHHHHHHHHHH-TS--SEEEEEHHHHHHHHHHHHHHHT-EEEEE-SS-
T ss_pred hchhhHHHHHHHHHHHHHHHh-CCCCcEEEeccCcchHHHHHHHhhcCCceehhhhcc
Confidence 344455544443333333322 3589999987533 577789999999999886644
No 392
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=27.94 E-value=3.7e+02 Score=22.69 Aligned_cols=124 Identities=14% Similarity=0.105 Sum_probs=61.1
Q ss_pred EEecCCCccChHH-HHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCcccCCCeEEEEecCCccccccccCCCCCCCccC
Q 036520 8 VMLPWSAFGHLMP-FFQLSIALAKSGVKVSFISTPKNIQRLPKPAPESEVAALINFVEFPLPASAALDDKLLLPEGAEAT 86 (473)
Q Consensus 8 l~~~~~~~gH~~p-~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~l~~~~~~~ 86 (473)
..+.+...+.+.. +-.+|.+|.++|++|.=+........- .....+....++.-.. +...+.+-.+...-
T Consensus 2 aav~~~~~~~~d~lL~~~a~~L~~~G~rv~G~vQ~~~~~~~-------~~~~~m~l~dl~~G~~--~~IsQ~LG~gs~gC 72 (159)
T PF10649_consen 2 AAVVYDDGGDIDALLAAFAARLRARGVRVAGLVQRNTADGD-------GGRCDMDLRDLPSGRR--IRISQDLGPGSRGC 72 (159)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccCCCC-------CCccceEEEECCCCCE--EEEeeccCCCCccc
Confidence 3445555567776 456899999999999855533211111 1123555555541110 00002222221111
Q ss_pred CCCChhhHHHHHHHHhhhhhHHHHHHHhCCCcEEEEcCCc---------chHHHHHHHcCCCeEEEecchhH
Q 036520 87 VDIPSENIQYLKIAYDLLQHPFKQFVAQQSVDWIIVDVMS---------HWAGKIAQEYHVPLLLFSAFSAA 149 (473)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~---------~~~~~~A~~lgiP~v~~~~~~~~ 149 (473)
.-.+ .........+...|. .++|++|..-|. ...+..|-..|||+++-.+....
T Consensus 73 rLD~--------~~La~A~~~l~~al~-~~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~V~~~~l 135 (159)
T PF10649_consen 73 RLDP--------GALAEASAALRRALA-EGADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTAVPPRNL 135 (159)
T ss_pred ccCH--------HHHHHHHHHHHHHHh-cCCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEEECHHHH
Confidence 1111 111112223333333 369999988652 12234467889999987665443
No 393
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=27.90 E-value=61 Score=32.77 Aligned_cols=34 Identities=18% Similarity=0.431 Sum_probs=26.9
Q ss_pred HHHHHHHhCCCcEEEEcCCcchHHHHHHHcCCCeEEE
Q 036520 107 PFKQFVAQQSVDWIIVDVMSHWAGKIAQEYHVPLLLF 143 (473)
Q Consensus 107 ~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~ 143 (473)
++.+.+++.+||++|.... ...+|+++|||++.+
T Consensus 386 e~~~~i~~~~pDllig~~~---~~~~a~k~gip~~~~ 419 (457)
T TIGR01284 386 ELEEIIEKYKPDIILTGIR---EGELAKKLGVPYINI 419 (457)
T ss_pred HHHHHHHhcCCCEEEecCC---cchhhhhcCCCEEEc
Confidence 4566677889999998853 456899999999875
No 394
>PLN00016 RNA-binding protein; Provisional
Probab=27.68 E-value=77 Score=31.02 Aligned_cols=36 Identities=22% Similarity=0.349 Sum_probs=25.0
Q ss_pred cEEEEec--CCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 036520 5 LHVVMLP--WSAFGHLMPFFQLSIALAKSGVKVSFISTPK 42 (473)
Q Consensus 5 ~~vl~~~--~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~ 42 (473)
++|++.. +|+.|.+- ..|+++|.++||+|+.++...
T Consensus 53 ~~VLVt~~~~GatG~iG--~~lv~~L~~~G~~V~~l~R~~ 90 (378)
T PLN00016 53 KKVLIVNTNSGGHAFIG--FYLAKELVKAGHEVTLFTRGK 90 (378)
T ss_pred ceEEEEeccCCCceeEh--HHHHHHHHHCCCEEEEEecCC
Confidence 4677762 24445554 467789999999999988543
No 395
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=27.57 E-value=77 Score=26.94 Aligned_cols=27 Identities=11% Similarity=0.134 Sum_probs=20.5
Q ss_pred ceeeeccCc------hhHHHHHhhCCceecccc
Q 036520 363 GTSLFHAGW------GSVIETLQFGHSLVVLPL 389 (473)
Q Consensus 363 ~~~ItHGG~------~s~~eal~~GvP~l~~P~ 389 (473)
.++++|.|- +++.+|...++|+|++.-
T Consensus 66 ~v~~~~~GpG~~n~~~~l~~A~~~~~Pvl~i~g 98 (172)
T PF02776_consen 66 GVVIVTSGPGATNALTGLANAYADRIPVLVITG 98 (172)
T ss_dssp EEEEEETTHHHHTTHHHHHHHHHTT-EEEEEEE
T ss_pred eEEEeecccchHHHHHHHhhcccceeeEEEEec
Confidence 348888873 578889999999999864
No 396
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=27.54 E-value=85 Score=26.37 Aligned_cols=42 Identities=14% Similarity=0.285 Sum_probs=29.7
Q ss_pred hhhHHHHHHHhCCCcEEEEcCCc---chHHHHHHHcCCCeEEEec
Q 036520 104 LQHPFKQFVAQQSVDWIIVDVMS---HWAGKIAQEYHVPLLLFSA 145 (473)
Q Consensus 104 ~~~~l~~ll~~~~pD~vI~D~~~---~~~~~~A~~lgiP~v~~~~ 145 (473)
..+.+.+++++.+||+|+.-.-. -.+..+|.++|.|++.-..
T Consensus 78 ~a~~l~~~~~~~~~~lVl~~~t~~g~~la~~lA~~L~~~~v~~v~ 122 (164)
T PF01012_consen 78 YADALAELIKEEGPDLVLFGSTSFGRDLAPRLAARLGAPLVTDVT 122 (164)
T ss_dssp HHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHHHHT-EEEEEEE
T ss_pred HHHHHHHHHHhcCCCEEEEcCcCCCCcHHHHHHHHhCCCccceEE
Confidence 34566778888899999987543 2556789999999997544
No 397
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=27.53 E-value=1.1e+02 Score=26.20 Aligned_cols=100 Identities=13% Similarity=0.082 Sum_probs=46.6
Q ss_pred EEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCC--cccCCCeEEEEecCCccccccccCCCCCCC
Q 036520 6 HVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPKNIQRLPKPAPE--SEVAALINFVEFPLPASAALDDKLLLPEGA 83 (473)
Q Consensus 6 ~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~--~~~~~~i~~~~i~~~~~~~~~~~~~l~~~~ 83 (473)
.|.+++..+.|=....+.+|-+-+-+|.+|.++..-... ...+.. -..-+++.+.... .++...
T Consensus 5 ~i~vytG~GKGKTTAAlGlalRA~G~G~rV~ivQFlKg~---~~~GE~~~l~~l~~~~~~~~g----------~~f~~~- 70 (172)
T PF02572_consen 5 LIQVYTGDGKGKTTAALGLALRAAGHGMRVLIVQFLKGG---RYSGELKALKKLPNVEIERFG----------KGFVWR- 70 (172)
T ss_dssp -EEEEESSSS-HHHHHHHHHHHHHCTT--EEEEESS--S---S--HHHHHHGGGT--EEEE------------TT-----
T ss_pred EEEEEeCCCCCchHHHHHHHHHHHhCCCEEEEEEEecCC---CCcCHHHHHHhCCeEEEEEcC----------Cccccc-
Confidence 467778888888887777777777778888887632210 000000 0111456666554 222111
Q ss_pred ccCCCCChhhHHHHHHHHhhhhhHHHHHHHhCCCcEEEEcCCc
Q 036520 84 EATVDIPSENIQYLKIAYDLLQHPFKQFVAQQSVDWIIVDVMS 126 (473)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~ 126 (473)
.+ . .... ....+...+...+.+.+..+|+||.|-..
T Consensus 71 ---~~-~-~~~~--~~~~~~~~~~a~~~i~~~~~dlvILDEi~ 106 (172)
T PF02572_consen 71 ---MN-E-EEED--RAAAREGLEEAKEAISSGEYDLVILDEIN 106 (172)
T ss_dssp ---GG-G-HHHH--HHHHHHHHHHHHHHTT-TT-SEEEEETHH
T ss_pred ---CC-C-cHHH--HHHHHHHHHHHHHHHhCCCCCEEEEcchH
Confidence 00 0 0001 33444445566677778899999999543
No 398
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=27.47 E-value=1.3e+02 Score=28.66 Aligned_cols=30 Identities=3% Similarity=-0.027 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHHhcCCCCEEEEEcCCCCC
Q 036520 296 LSKDQVYEIAYGLELSGLPFLWALRKPEWA 325 (473)
Q Consensus 296 ~~~~~~~~~~~al~~~~~~~i~~~~~~~~~ 325 (473)
.+.++.+.+-+++.....+.||.+.++...
T Consensus 50 ~~~~Ra~dL~~a~~Dp~i~aI~~~rGG~g~ 79 (308)
T cd07062 50 SPEERAEELMAAFADPSIKAIIPTIGGDDS 79 (308)
T ss_pred CHHHHHHHHHHHhcCCCCCEEEECCcccCH
Confidence 466788889999999999999999987543
No 399
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=27.47 E-value=1.2e+02 Score=24.62 Aligned_cols=39 Identities=18% Similarity=0.103 Sum_probs=34.4
Q ss_pred CccEEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 036520 3 RKLHVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTP 41 (473)
Q Consensus 3 ~~~~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 41 (473)
++.||++...++-+|-...-=++..|...|++|......
T Consensus 1 ~~~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~ 39 (132)
T TIGR00640 1 RRPRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLF 39 (132)
T ss_pred CCCEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCC
Confidence 467899999999999999999999999999999987653
No 400
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=27.41 E-value=3.6e+02 Score=28.31 Aligned_cols=84 Identities=11% Similarity=0.023 Sum_probs=45.5
Q ss_pred ceeeeccCchhHHHHHh---hCCceeccccccc---cccceeeeeec--ceEEEEecCCCCCcCHHHHHHHHHHHhcCcc
Q 036520 363 GTSLFHAGWGSVIETLQ---FGHSLVVLPLIID---QPLNARLLVDK--DLAVQVERKDDGSFTRDGIAKALRLATVSEE 434 (473)
Q Consensus 363 ~~~ItHGG~~s~~eal~---~GvP~l~~P~~~D---Q~~na~~v~~~--G~G~~l~~~~~~~~t~~~l~~~i~~ll~~~~ 434 (473)
++||.-.|+-.-+-.+. .-+|+|.+|.-.. -.+--.-+.+. |+.+..-.- ++..++.-++..|-.+ .
T Consensus 467 ~v~i~~ag~~~~l~~~~a~~t~~pvi~vp~~~~~~~g~~~l~s~~~~p~g~pv~~v~i-~~~~~aa~~a~~i~~~-~--- 541 (577)
T PLN02948 467 QVIIAGAGGAAHLPGMVASMTPLPVIGVPVKTSHLDGLDSLLSIVQMPRGVPVATVAI-GNATNAGLLAVRMLGA-S--- 541 (577)
T ss_pred CEEEEEcCccccchHHHhhccCCCEEEcCCCCCCCCcHHHHHHHhcCCCCCeEEEEec-CChHHHHHHHHHHHhc-C---
Confidence 34888888643333322 3589999998532 11111113334 643222111 1245565555444322 3
Q ss_pred hHHHHHHHHHHHHHhcc
Q 036520 435 GEKLRVRAREAANTFND 451 (473)
Q Consensus 435 ~~~~~~~a~~~~~~~~~ 451 (473)
+++++++.+..++.+++
T Consensus 542 ~~~~~~~~~~~~~~~~~ 558 (577)
T PLN02948 542 DPDLLDKMEAYQEDMRD 558 (577)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 68899999988888864
No 401
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=27.31 E-value=1.2e+02 Score=27.37 Aligned_cols=43 Identities=16% Similarity=0.186 Sum_probs=27.6
Q ss_pred HHHHHHHhCCCcEEEEcCCc--chHHHHH----HHcCCCeEEEecchhH
Q 036520 107 PFKQFVAQQSVDWIIVDVMS--HWAGKIA----QEYHVPLLLFSAFSAA 149 (473)
Q Consensus 107 ~l~~ll~~~~pD~vI~D~~~--~~~~~~A----~~lgiP~v~~~~~~~~ 149 (473)
.....+++|+||++|.=.-. ..|...| ...|||+|+++-.+..
T Consensus 51 ~~~~~~~~~~pDf~i~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p~~ 99 (277)
T PRK00994 51 VVKKMLEEWKPDFVIVISPNPAAPGPKKAREILKAAGIPCIVIGDAPGK 99 (277)
T ss_pred HHHHHHHhhCCCEEEEECCCCCCCCchHHHHHHHhcCCCEEEEcCCCcc
Confidence 34556789999987765321 2333444 4569999999765543
No 402
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=27.22 E-value=1.4e+02 Score=23.78 Aligned_cols=33 Identities=30% Similarity=0.247 Sum_probs=26.9
Q ss_pred EEEecCCCccChHHHHHHHHHHHhCCCeEEEEe
Q 036520 7 VVMLPWSAFGHLMPFFQLSIALAKSGVKVSFIS 39 (473)
Q Consensus 7 vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~ 39 (473)
++++..+..+.-..+..+++.|+++|+.|..+.
T Consensus 1 ~vv~~HG~~~~~~~~~~~~~~l~~~G~~v~~~~ 33 (145)
T PF12695_consen 1 VVVLLHGWGGSRRDYQPLAEALAEQGYAVVAFD 33 (145)
T ss_dssp EEEEECTTTTTTHHHHHHHHHHHHTTEEEEEES
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 356666677777789999999999999988874
No 403
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=27.08 E-value=5.2e+02 Score=24.13 Aligned_cols=69 Identities=9% Similarity=0.019 Sum_probs=46.6
Q ss_pred ccCchhHHHHHhhCCceeccccc--cccccceeeeeecceEEEEecCCCCCcCHHHHHHHHHHHhcCcchHHHHHHHHHH
Q 036520 368 HAGWGSVIETLQFGHSLVVLPLI--IDQPLNARLLVDKDLAVQVERKDDGSFTRDGIAKALRLATVSEEGEKLRVRAREA 445 (473)
Q Consensus 368 HGG~~s~~eal~~GvP~l~~P~~--~DQ~~na~~v~~~G~G~~l~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~a~~~ 445 (473)
..|.+....|+..|+...++-.+ .+..+....+.+.-+-+ .. .-|.++|.+.+.++ + ..-|-+..+.+
T Consensus 196 f~G~~p~~~ai~~G~k~tG~TvH~V~e~lD~GpII~Q~~v~I--~~----~dt~~~L~~ri~~~-E---~~~~~~ai~~~ 265 (280)
T TIGR00655 196 FIGANPYQRAYERGVKIIGATAHYVTEELDEGPIIEQDVVRV--DH----TDNVEDLIRAGRDI-E---KVVLARAVKLH 265 (280)
T ss_pred CCCcCHHHHHHHcCCCeEEEEEEEEcCCCcCCCeEEEEEEEc--CC----CCCHHHHHHHHHHH-H---HHHHHHHHHHH
Confidence 35888999999999999888764 36666766666554433 22 45888998888775 3 34455555544
Q ss_pred H
Q 036520 446 A 446 (473)
Q Consensus 446 ~ 446 (473)
.
T Consensus 266 ~ 266 (280)
T TIGR00655 266 L 266 (280)
T ss_pred H
Confidence 4
No 404
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=27.05 E-value=46 Score=31.07 Aligned_cols=50 Identities=10% Similarity=0.018 Sum_probs=35.0
Q ss_pred eeeeccCchhHHHHHh---hCCceeccccccccccceeeeeecceEEEEecCCCCCcCHHHHHHHHHHHhcC
Q 036520 364 TSLFHAGWGSVIETLQ---FGHSLVVLPLIIDQPLNARLLVDKDLAVQVERKDDGSFTRDGIAKALRLATVS 432 (473)
Q Consensus 364 ~~ItHGG~~s~~eal~---~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~t~~~l~~~i~~ll~~ 432 (473)
++|+-||-||+++++. .++|+++++... +|..- .++.+++.+++.++++|
T Consensus 60 ~vi~iGGDGTlL~a~~~~~~~~pi~gIn~G~-------------lGFl~------~~~~~~~~~~l~~i~~g 112 (277)
T PRK03708 60 FIIAIGGDGTILRIEHKTKKDIPILGINMGT-------------LGFLT------EVEPEETFFALSRLLEG 112 (277)
T ss_pred EEEEEeCcHHHHHHHHhcCCCCeEEEEeCCC-------------CCccc------cCCHHHHHHHHHHHHcC
Confidence 4999999999999984 356777777532 11111 34577888899888874
No 405
>CHL00194 ycf39 Ycf39; Provisional
Probab=27.01 E-value=96 Score=29.40 Aligned_cols=33 Identities=18% Similarity=0.278 Sum_probs=23.7
Q ss_pred cEEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 036520 5 LHVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTP 41 (473)
Q Consensus 5 ~~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 41 (473)
|+|++. |+.|.+-. .++++|.++||+|+.++-.
T Consensus 1 MkIlVt--GatG~iG~--~lv~~Ll~~g~~V~~l~R~ 33 (317)
T CHL00194 1 MSLLVI--GATGTLGR--QIVRQALDEGYQVRCLVRN 33 (317)
T ss_pred CEEEEE--CCCcHHHH--HHHHHHHHCCCeEEEEEcC
Confidence 466654 56665544 5788899999999988743
No 406
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=26.89 E-value=5.2e+02 Score=29.52 Aligned_cols=42 Identities=17% Similarity=0.304 Sum_probs=30.4
Q ss_pred CCCc---cEEEEecCCCc--cCh----HHHHHHHHHHHhCCCeEEEEeCCC
Q 036520 1 MARK---LHVVMLPWSAF--GHL----MPFFQLSIALAKSGVKVSFISTPK 42 (473)
Q Consensus 1 m~~~---~~vl~~~~~~~--gH~----~p~l~la~~L~~~Gh~Vt~~~~~~ 42 (473)
|+++ .+||++-.|.. |+. +.-.+++++|.+.|++|.++.+..
T Consensus 1 m~~~~~~~kvlviG~G~~~igq~~E~d~sg~q~~~aL~e~G~~vi~v~~np 51 (1068)
T PRK12815 1 MPKDTDIQKILVIGSGPIVIGQAAEFDYSGTQACLALKEEGYQVVLVNPNP 51 (1068)
T ss_pred CCCCCCCCEEEEECCCcchhcchhhhhhHHHHHHHHHHHcCCEEEEEeCCc
Confidence 5543 47888777653 432 367789999999999999887543
No 407
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=26.86 E-value=1.1e+02 Score=26.01 Aligned_cols=36 Identities=17% Similarity=0.025 Sum_probs=25.3
Q ss_pred CccEEEEecCCCccChHHHHHHHHHHHhCCCeEEEEe
Q 036520 3 RKLHVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFIS 39 (473)
Q Consensus 3 ~~~~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~ 39 (473)
+..+|++++.++. .=---+.+|+.|+++|++|+++.
T Consensus 24 ~~~~v~il~G~Gn-NGgDgl~~AR~L~~~G~~V~v~~ 59 (169)
T PF03853_consen 24 KGPRVLILCGPGN-NGGDGLVAARHLANRGYNVTVYL 59 (169)
T ss_dssp TT-EEEEEE-SSH-HHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCeEEEEECCCC-ChHHHHHHHHHHHHCCCeEEEEE
Confidence 3457888888752 11236889999999999999844
No 408
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=26.81 E-value=1e+02 Score=26.77 Aligned_cols=32 Identities=22% Similarity=0.389 Sum_probs=21.6
Q ss_pred cEEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 036520 5 LHVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTP 41 (473)
Q Consensus 5 ~~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 41 (473)
|||.++ +-||+- +++|..|+++||+|+.+-..
T Consensus 1 M~I~Vi---GlGyvG--l~~A~~lA~~G~~V~g~D~~ 32 (185)
T PF03721_consen 1 MKIAVI---GLGYVG--LPLAAALAEKGHQVIGVDID 32 (185)
T ss_dssp -EEEEE-----STTH--HHHHHHHHHTTSEEEEE-S-
T ss_pred CEEEEE---CCCcch--HHHHHHHHhCCCEEEEEeCC
Confidence 567666 555553 78899999999999987543
No 409
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=26.66 E-value=2.2e+02 Score=23.02 Aligned_cols=80 Identities=15% Similarity=0.114 Sum_probs=39.0
Q ss_pred HHHHHHHhcCCCCEEEEEcCCCCCCCccccCchhhhhhcCCCceEEecccchHHHhhCCCcceeeeccCchhHHHHHhh-
Q 036520 302 YEIAYGLELSGLPFLWALRKPEWATDDVDALPLGFADTIRGKGIVSIGWAPQLEILAHPSIGTSLFHAGWGSVIETLQF- 380 (473)
Q Consensus 302 ~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~ItHGG~~s~~eal~~- 380 (473)
....++..+.+-+++=++...... ....+.. .-...+.+..+--...+|-+.+-..++.-||.||..|....
T Consensus 2 ~a~~~ga~~~gG~viGi~p~~~~~---~~~~~~~----~~~~~~~~~~~~~Rk~~m~~~sda~I~lPGG~GTl~El~~~~ 74 (133)
T PF03641_consen 2 GAVAKGAKEAGGRVIGIIPEFLFP---FEEPPNP----YVTELIIVDDMFERKEIMIESSDAFIALPGGIGTLDELFEAL 74 (133)
T ss_dssp HHHHHHHHHTTTTEEEEEETTGTT---TTTTCCT----TSSEEEEESSHHHHHHHHHHHESEEEEES-SHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCeEEEEecCcccc---ccccCCc----ccCceeEeCChHHHHHHHHHhCCEEEEEecCCchHHHHHHHH
Confidence 345666666677766665432111 0111110 01112333233333445444444467888999999987432
Q ss_pred ---------CCceeccc
Q 036520 381 ---------GHSLVVLP 388 (473)
Q Consensus 381 ---------GvP~l~~P 388 (473)
.+|++.+-
T Consensus 75 ~~~~l~~~~~~Piil~~ 91 (133)
T PF03641_consen 75 TLMQLGRHNKVPIILLN 91 (133)
T ss_dssp HHHHTTSSTS-EEEEEE
T ss_pred HHHhhccccCCCEEEeC
Confidence 34887765
No 410
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=26.64 E-value=1.8e+02 Score=30.43 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=21.7
Q ss_pred cceeeeccCch------hHHHHHhhCCceeccc
Q 036520 362 IGTSLFHAGWG------SVIETLQFGHSLVVLP 388 (473)
Q Consensus 362 ~~~~ItHGG~~------s~~eal~~GvP~l~~P 388 (473)
.+++++|.|-| .+.+|...++|+|++.
T Consensus 79 ~gv~~~t~GPG~~N~~~gl~~A~~~~~Pvl~It 111 (571)
T PRK07710 79 PGVVIATSGPGATNVVTGLADAMIDSLPLVVFT 111 (571)
T ss_pred CeEEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 33488888855 6789999999999985
No 411
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=26.55 E-value=3.5e+02 Score=26.87 Aligned_cols=34 Identities=21% Similarity=0.183 Sum_probs=24.3
Q ss_pred cEEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCCc
Q 036520 5 LHVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPKN 43 (473)
Q Consensus 5 ~~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~ 43 (473)
|||+++=.+.. -..|++++++.|+.+++++.+.+
T Consensus 1 ~kiliiG~G~~-----~~~l~~~~~~~~~~~~~~~~~~~ 34 (423)
T TIGR00877 1 MKVLVIGNGGR-----EHALAWKLAQSPLVKYVYVAPGN 34 (423)
T ss_pred CEEEEECCChH-----HHHHHHHHHhCCCccEEEEECCC
Confidence 57888766665 45678888888888887765443
No 412
>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]
Probab=26.54 E-value=1.5e+02 Score=27.91 Aligned_cols=63 Identities=16% Similarity=0.219 Sum_probs=51.9
Q ss_pred HHHhhCCCcceeeeccCchhHHHHHhhCCceeccccccccccceeeeeecceEEEEecCCCCCcCHHHHHHHHHHHhcCc
Q 036520 354 LEILAHPSIGTSLFHAGWGSVIETLQFGHSLVVLPLIIDQPLNARLLVDKDLAVQVERKDDGSFTRDGIAKALRLATVSE 433 (473)
Q Consensus 354 ~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~t~~~l~~~i~~ll~~~ 433 (473)
..-+.|.++=+|.-.||.||+..-+. ++.+ .++.++|...++.-|.
T Consensus 95 GSYFK~sDLWIVMEYCGAGSiSDI~R-----------------------------~R~K---~L~E~EIs~iL~~TLK-- 140 (502)
T KOG0574|consen 95 GSYFKHSDLWIVMEYCGAGSISDIMR-----------------------------ARRK---PLSEQEISAVLRDTLK-- 140 (502)
T ss_pred hhhccCCceEeehhhcCCCcHHHHHH-----------------------------HhcC---CccHHHHHHHHHHHHh--
Confidence 45667888877889999999988775 4444 8999999999999999
Q ss_pred chHHHHHHHHHHHHHhcc
Q 036520 434 EGEKLRVRAREAANTFND 451 (473)
Q Consensus 434 ~~~~~~~~a~~~~~~~~~ 451 (473)
+-.|.--++++.+.++.
T Consensus 141 -GL~YLH~~~KIHRDIKA 157 (502)
T KOG0574|consen 141 -GLQYLHDLKKIHRDIKA 157 (502)
T ss_pred -HHHHHHHHHHHHhhccc
Confidence 67899999999888763
No 413
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=26.50 E-value=78 Score=30.83 Aligned_cols=37 Identities=24% Similarity=0.406 Sum_probs=30.4
Q ss_pred CCCccEEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 036520 1 MARKLHVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPK 42 (473)
Q Consensus 1 m~~~~~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~ 42 (473)
|..+++|+++=.+-.| +..|-.|+++|++|+++-...
T Consensus 1 ~~~~~~vvVIGgGi~G-----ls~A~~La~~G~~V~vie~~~ 37 (387)
T COG0665 1 MSMKMDVVIIGGGIVG-----LSAAYYLAERGADVTVLEAGE 37 (387)
T ss_pred CCCcceEEEECCcHHH-----HHHHHHHHHcCCEEEEEecCc
Confidence 5567789998776667 899999999999999987544
No 414
>COG4668 MtlA Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]
Probab=26.49 E-value=3.4e+02 Score=22.37 Aligned_cols=67 Identities=16% Similarity=0.135 Sum_probs=46.1
Q ss_pred eeeeccCchhHHHHHhhCCceeccccc--cccccceeeeeecceEEEEecCCCCCcCHHHHHHHHHHHhcCcchHHHHHH
Q 036520 364 TSLFHAGWGSVIETLQFGHSLVVLPLI--IDQPLNARLLVDKDLAVQVERKDDGSFTRDGIAKALRLATVSEEGEKLRVR 441 (473)
Q Consensus 364 ~~ItHGG~~s~~eal~~GvP~l~~P~~--~DQ~~na~~v~~~G~G~~l~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~ 441 (473)
+.|-||-.-+-...+..||=++.+|.. +++.-.|..+ +|+.-+.. ..-++-+.|..+++ +++.-++
T Consensus 57 IAIPHgt~e~k~~V~kTgv~i~q~p~GV~wg~g~~a~~v----iGIAak~~-----EHl~~l~~lt~~l~---de~~v~~ 124 (142)
T COG4668 57 IAIPHGTGEAKDLVLKTGVVIVQFPEGVDWGDGQIAYLV----IGIAAKSD-----EHLQLLRQLTIALS---DEEVVER 124 (142)
T ss_pred eecCCCChHHHHHHHHcCeEEEECCCccccCCCceEEEE----EEEecCCh-----HHHHHHHHHHHHhC---CHHHHHH
Confidence 389999777778999999999999964 3433334433 66655443 44567788888888 5555544
Q ss_pred H
Q 036520 442 A 442 (473)
Q Consensus 442 a 442 (473)
.
T Consensus 125 L 125 (142)
T COG4668 125 L 125 (142)
T ss_pred H
Confidence 3
No 415
>PRK08322 acetolactate synthase; Reviewed
Probab=26.45 E-value=1.1e+02 Score=31.69 Aligned_cols=27 Identities=22% Similarity=0.169 Sum_probs=21.8
Q ss_pred cceeeeccCc------hhHHHHHhhCCceeccc
Q 036520 362 IGTSLFHAGW------GSVIETLQFGHSLVVLP 388 (473)
Q Consensus 362 ~~~~ItHGG~------~s~~eal~~GvP~l~~P 388 (473)
.+++++|.|- +.+.+|...++|+|++.
T Consensus 64 ~gv~~~t~GpG~~N~~~~i~~A~~~~~Pll~i~ 96 (547)
T PRK08322 64 AGVCLSTLGPGATNLVTGVAYAQLGGMPMVAIT 96 (547)
T ss_pred CEEEEECCCccHhHHHHHHHHHhhcCCCEEEEe
Confidence 4448888774 47889999999999985
No 416
>PF10933 DUF2827: Protein of unknown function (DUF2827); InterPro: IPR021234 This is a family of uncharacterised proteins found in Burkholderia.
Probab=26.42 E-value=6.1e+02 Score=24.65 Aligned_cols=104 Identities=19% Similarity=0.103 Sum_probs=68.1
Q ss_pred CceEEecccchHH-HhhCCCcceeeeccCch----hHHHHHhhCCceeccccccccccceeeeeecceEEEEecCCCCCc
Q 036520 343 KGIVSIGWAPQLE-ILAHPSIGTSLFHAGWG----SVIETLQFGHSLVVLPLIIDQPLNARLLVDKDLAVQVERKDDGSF 417 (473)
Q Consensus 343 ~nv~~~~~~pq~~-ll~~~~~~~~ItHGG~~----s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~ 417 (473)
....+.+..+-.+ +-.|.++ ||+|==-| .-.|+|+-|-|+| .|+..+.+ +|...+. +
T Consensus 253 gkasfegR~~~p~fla~~tD~--VvSHqWeN~lNYlY~daLyggYPLV---------HNS~~l~d--~GYYY~~-----f 314 (364)
T PF10933_consen 253 GKASFEGRFDFPDFLAQHTDA--VVSHQWENPLNYLYYDALYGGYPLV---------HNSPLLKD--VGYYYPD-----F 314 (364)
T ss_pred CeeEEeeecChHHHHHhCCCE--EEeccccchhhHHHHHHHhcCCCcc---------cCcchhcc--cCcCCCC-----c
Confidence 3445555555533 3456676 99995323 4579999999998 57887775 7766654 4
Q ss_pred CHHHHHHHHHHHhc--CcchHHHHHHHHHHHHHhccCCCcHHHHHHHHHHH
Q 036520 418 TRDGIAKALRLATV--SEEGEKLRVRAREAANTFNDKKLHDDYSVRFVEYL 466 (473)
Q Consensus 418 t~~~l~~~i~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 466 (473)
...+=++++.+++. +.+-+.|+++|+++=..+. +....+++...+.+
T Consensus 315 D~~~G~r~L~~A~~~HD~~~~~Y~~ra~~~l~~~~--p~n~~nv~~y~~~L 363 (364)
T PF10933_consen 315 DAFEGARQLLRAIREHDADLDAYRARARRLLDRLS--PENPANVRAYEARL 363 (364)
T ss_pred cHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhhC--CCCHHHHHHHHHhh
Confidence 55555556666654 3345789999999888763 45566666665543
No 417
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=26.40 E-value=98 Score=31.59 Aligned_cols=43 Identities=5% Similarity=-0.001 Sum_probs=35.5
Q ss_pred EEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCCccccCC
Q 036520 6 HVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPKNIQRLP 48 (473)
Q Consensus 6 ~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~ 48 (473)
-+++.-.++.|=-.-.++++.+.+++|..|.+++..+..+.+.
T Consensus 265 ~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~ 307 (484)
T TIGR02655 265 IILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLL 307 (484)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHH
Confidence 3566677788999999999999999999999999877655554
No 418
>PRK05636 replicative DNA helicase; Provisional
Probab=26.35 E-value=1.3e+02 Score=30.90 Aligned_cols=39 Identities=8% Similarity=0.067 Sum_probs=29.2
Q ss_pred EEEecCCCccChHHHHHHHHHHH-hCCCeEEEEeCCCccc
Q 036520 7 VVMLPWSAFGHLMPFFQLSIALA-KSGVKVSFISTPKNIQ 45 (473)
Q Consensus 7 vl~~~~~~~gH~~p~l~la~~L~-~~Gh~Vt~~~~~~~~~ 45 (473)
+++...|+.|=..-++.+|...+ +.|..|.|++.+...+
T Consensus 268 iiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ 307 (505)
T PRK05636 268 IIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKS 307 (505)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHH
Confidence 45666778888888889998876 4588998887665543
No 419
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=26.35 E-value=1.8e+02 Score=30.32 Aligned_cols=27 Identities=26% Similarity=0.397 Sum_probs=21.7
Q ss_pred cceeeeccCch------hHHHHHhhCCceeccc
Q 036520 362 IGTSLFHAGWG------SVIETLQFGHSLVVLP 388 (473)
Q Consensus 362 ~~~~ItHGG~~------s~~eal~~GvP~l~~P 388 (473)
.+++++|.|-| .+.+|.+.++|||++.
T Consensus 68 ~gv~~~t~GpG~~n~l~gia~A~~~~~Pvl~i~ 100 (572)
T PRK08979 68 VGVVLVTSGPGATNTITGIATAYMDSIPMVVLS 100 (572)
T ss_pred CeEEEECCCchHhHHHHHHHHHhhcCCCEEEEe
Confidence 44488887744 6889999999999985
No 420
>PRK13054 lipid kinase; Reviewed
Probab=26.29 E-value=1.5e+02 Score=27.84 Aligned_cols=27 Identities=30% Similarity=0.384 Sum_probs=21.6
Q ss_pred ceeeeccCchhHHHHHhh------C--Cceecccc
Q 036520 363 GTSLFHAGWGSVIETLQF------G--HSLVVLPL 389 (473)
Q Consensus 363 ~~~ItHGG~~s~~eal~~------G--vP~l~~P~ 389 (473)
+.+|.-||-||+.|++.. + +|+-++|.
T Consensus 58 d~vvv~GGDGTl~evv~~l~~~~~~~~~~lgiiP~ 92 (300)
T PRK13054 58 ATVIAGGGDGTINEVATALAQLEGDARPALGILPL 92 (300)
T ss_pred CEEEEECCccHHHHHHHHHHhhccCCCCcEEEEeC
Confidence 349999999999998754 3 58888885
No 421
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=26.15 E-value=1.2e+02 Score=23.40 Aligned_cols=36 Identities=11% Similarity=0.314 Sum_probs=26.5
Q ss_pred hHHHHHHHhCCCcEEEEcC---CcchHHHHHHHcCCCeE
Q 036520 106 HPFKQFVAQQSVDWIIVDV---MSHWAGKIAQEYHVPLL 141 (473)
Q Consensus 106 ~~l~~ll~~~~pD~vI~D~---~~~~~~~~A~~lgiP~v 141 (473)
+.+.++.++.++|+||..+ +.....+..+..|||+.
T Consensus 52 ~~l~~~a~~~~idlvvvGPE~pL~~Gl~D~l~~~gi~vf 90 (100)
T PF02844_consen 52 EELADFAKENKIDLVVVGPEAPLVAGLADALRAAGIPVF 90 (100)
T ss_dssp HHHHHHHHHTTESEEEESSHHHHHTTHHHHHHHTT-CEE
T ss_pred HHHHHHHHHcCCCEEEECChHHHHHHHHHHHHHCCCcEE
Confidence 3566778889999999986 33455577888999976
No 422
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=26.14 E-value=1.1e+02 Score=28.21 Aligned_cols=36 Identities=19% Similarity=0.241 Sum_probs=30.2
Q ss_pred EEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 036520 7 VVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPK 42 (473)
Q Consensus 7 vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~ 42 (473)
+++.-.|+.|=..-.++++...+++|..|.|++...
T Consensus 39 ~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee 74 (259)
T TIGR03878 39 INITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVES 74 (259)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecC
Confidence 455666788999999999999888999999999764
No 423
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=26.12 E-value=52 Score=29.28 Aligned_cols=92 Identities=16% Similarity=0.253 Sum_probs=52.0
Q ss_pred CccChHHHHHHHHHHHhCCCeEEEEeCCCccccC----CCCCCC--c-ccCCCeEEEEecCCccccccccCCCCCCCccC
Q 036520 14 AFGHLMPFFQLSIALAKSGVKVSFISTPKNIQRL----PKPAPE--S-EVAALINFVEFPLPASAALDDKLLLPEGAEAT 86 (473)
Q Consensus 14 ~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~----~~~~~~--~-~~~~~i~~~~i~~~~~~~~~~~~~l~~~~~~~ 86 (473)
+.|--.-...++.-+-..||.|++++++.....+ ....-+ . -..+.+.+.++.+ +..
T Consensus 38 ~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~---------~~~------- 101 (235)
T COG2874 38 GTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFFPVNL---------EPV------- 101 (235)
T ss_pred CccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEEEEecc---------ccc-------
Confidence 4566667788888888999999999987532211 111000 0 0013344444421 100
Q ss_pred CCCChhhHHHHHHHHhhhhhHHHHHHHhCCCcEEEEcCCcchH
Q 036520 87 VDIPSENIQYLKIAYDLLQHPFKQFVAQQSVDWIIVDVMSHWA 129 (473)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~~~ 129 (473)
.+-....+...+.+.+.++.++-|+||.|.++..+
T Consensus 102 --------~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~ 136 (235)
T COG2874 102 --------NWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFA 136 (235)
T ss_pred --------ccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHh
Confidence 01122333345556677778899999999877433
No 424
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=26.08 E-value=1.2e+02 Score=26.82 Aligned_cols=40 Identities=15% Similarity=0.197 Sum_probs=30.1
Q ss_pred hhHHHHHHHhCCCcEEEEcCCc------chHHHHHHHcCCCeEEEe
Q 036520 105 QHPFKQFVAQQSVDWIIVDVMS------HWAGKIAQEYHVPLLLFS 144 (473)
Q Consensus 105 ~~~l~~ll~~~~pD~vI~D~~~------~~~~~~A~~lgiP~v~~~ 144 (473)
.+.+.+++++.+||+|+.-.-. ..+..+|.++|.|+++=.
T Consensus 97 a~al~~~i~~~~p~lVL~~~t~~~~~grdlaprlAarLga~lvsdv 142 (202)
T cd01714 97 AKALAAAIKKIGVDLILTGKQSIDGDTGQVGPLLAELLGWPQITYV 142 (202)
T ss_pred HHHHHHHHHHhCCCEEEEcCCcccCCcCcHHHHHHHHhCCCccceE
Confidence 4456677777789999977433 467889999999988643
No 425
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=26.07 E-value=2.3e+02 Score=29.53 Aligned_cols=27 Identities=19% Similarity=0.445 Sum_probs=21.8
Q ss_pred cceeeeccCch------hHHHHHhhCCceeccc
Q 036520 362 IGTSLFHAGWG------SVIETLQFGHSLVVLP 388 (473)
Q Consensus 362 ~~~~ItHGG~~------s~~eal~~GvP~l~~P 388 (473)
.+++++|.|-| .+.+|.+.++|||++.
T Consensus 74 ~gv~~~t~GPG~~n~~~gla~A~~~~~Pvl~i~ 106 (566)
T PRK07282 74 LGVAVVTSGPGATNAITGIADAMSDSVPLLVFT 106 (566)
T ss_pred CeEEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 44488888854 6789999999999995
No 426
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=26.00 E-value=77 Score=31.57 Aligned_cols=33 Identities=21% Similarity=0.399 Sum_probs=25.1
Q ss_pred HHHHHHhCCCcEEEEcCCcchHHHHHHHcCCCeEEE
Q 036520 108 FKQFVAQQSVDWIIVDVMSHWAGKIAQEYHVPLLLF 143 (473)
Q Consensus 108 l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~ 143 (473)
+.+.+++.+||+||..... ..+|+++|||++.+
T Consensus 350 ~~~~~~~~~pdliig~s~~---~~~a~~lgip~~~~ 382 (415)
T cd01977 350 FFEILEMLKPDIILTGPRV---GELVKKLHVPYVNI 382 (415)
T ss_pred HHHHHHhcCCCEEEecCcc---chhhhhcCCCEEec
Confidence 3445567789999988644 36899999999876
No 427
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=25.97 E-value=1.4e+02 Score=26.86 Aligned_cols=33 Identities=24% Similarity=0.343 Sum_probs=29.4
Q ss_pred CCccChHHHHHHHHHHHhCCCeEEEEeCCCccc
Q 036520 13 SAFGHLMPFFQLSIALAKSGVKVSFISTPKNIQ 45 (473)
Q Consensus 13 ~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~ 45 (473)
||.|=..-++.||.+|+++|-.|+++=.+.+..
T Consensus 11 GGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~p 43 (231)
T PF07015_consen 11 GGAGKTTAAMALASELAARGARVALIDADPNQP 43 (231)
T ss_pred CCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCc
Confidence 677999999999999999999999998776654
No 428
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=25.86 E-value=2.1e+02 Score=28.00 Aligned_cols=26 Identities=15% Similarity=0.163 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhcCCCCEEEEEcCCC
Q 036520 298 KDQVYEIAYGLELSGLPFLWALRKPE 323 (473)
Q Consensus 298 ~~~~~~~~~al~~~~~~~i~~~~~~~ 323 (473)
|.++..++++|.+.|+++.+.+..+.
T Consensus 10 p~~~~~la~~L~~~G~~v~~~~~~~~ 35 (396)
T cd03818 10 PGQFRHLAPALAAQGHEVVFLTEPNA 35 (396)
T ss_pred chhHHHHHHHHHHCCCEEEEEecCCC
Confidence 45678899999999999888776553
No 429
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=25.84 E-value=1.2e+02 Score=26.03 Aligned_cols=36 Identities=17% Similarity=0.198 Sum_probs=24.0
Q ss_pred HHHHhCCCcEEEEcCCcch-HHHHHHHcCCCeEEEec
Q 036520 110 QFVAQQSVDWIIVDVMSHW-AGKIAQEYHVPLLLFSA 145 (473)
Q Consensus 110 ~ll~~~~pD~vI~D~~~~~-~~~~A~~lgiP~v~~~~ 145 (473)
+.|.+.+||+||....... ...-.++.|+|.+.+..
T Consensus 54 E~l~~l~PDlii~~~~~~~~~~~~l~~~gi~v~~~~~ 90 (195)
T cd01143 54 EKIVALKPDLVIVSSSSLAELLEKLKDAGIPVVVLPA 90 (195)
T ss_pred HHHhccCCCEEEEcCCcCHHHHHHHHHcCCcEEEeCC
Confidence 3346679999998653322 33455788999887744
No 430
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=25.46 E-value=80 Score=29.70 Aligned_cols=32 Identities=22% Similarity=0.394 Sum_probs=24.4
Q ss_pred cEEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 036520 5 LHVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTP 41 (473)
Q Consensus 5 ~~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 41 (473)
|||+|+-.|..| ..+|..|+++||+|+++..+
T Consensus 1 mkI~IiG~G~iG-----~~~a~~L~~~g~~V~~~~r~ 32 (305)
T PRK12921 1 MRIAVVGAGAVG-----GTFGGRLLEAGRDVTFLVRP 32 (305)
T ss_pred CeEEEECCCHHH-----HHHHHHHHHCCCceEEEecH
Confidence 578887555554 35788899999999999863
No 431
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=25.42 E-value=1.3e+02 Score=28.21 Aligned_cols=42 Identities=14% Similarity=0.166 Sum_probs=31.2
Q ss_pred CCCccEEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 036520 1 MARKLHVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPK 42 (473)
Q Consensus 1 m~~~~~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~ 42 (473)
|.+..+|.|..-|+-|=..-...||..|++.|++|.++-.+.
T Consensus 1 ~~~~~~iai~~KGGvGKTt~~~nLa~~la~~g~kVLliD~D~ 42 (295)
T PRK13234 1 MSKLRQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDP 42 (295)
T ss_pred CCcceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeccc
Confidence 444334455544566888889999999999999999985443
No 432
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=25.40 E-value=1.1e+02 Score=30.28 Aligned_cols=39 Identities=21% Similarity=0.200 Sum_probs=31.0
Q ss_pred ccEEEEecC--CCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 036520 4 KLHVVMLPW--SAFGHLMPFFQLSIALAKSGVKVSFISTPK 42 (473)
Q Consensus 4 ~~~vl~~~~--~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~ 42 (473)
+|+|+.+.. |+.|=..-.+.||..|+.+|++|.++=.+.
T Consensus 120 ~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlDp 160 (405)
T PRK13869 120 HLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDP 160 (405)
T ss_pred CceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCCC
Confidence 456655554 677999999999999999999999885443
No 433
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=25.38 E-value=56 Score=30.99 Aligned_cols=29 Identities=10% Similarity=0.260 Sum_probs=23.1
Q ss_pred CCCcceeeeccCchhHHHHHhh----CCceecccc
Q 036520 359 HPSIGTSLFHAGWGSVIETLQF----GHSLVVLPL 389 (473)
Q Consensus 359 ~~~~~~~ItHGG~~s~~eal~~----GvP~l~~P~ 389 (473)
.+++ +|+-||-||+++++.. ++|++++..
T Consensus 57 ~~d~--vi~~GGDGT~l~~~~~~~~~~~pv~gin~ 89 (305)
T PRK02645 57 LIDL--AIVLGGDGTVLAAARHLAPHDIPILSVNV 89 (305)
T ss_pred CcCE--EEEECCcHHHHHHHHHhccCCCCEEEEec
Confidence 3455 9999999999999764 778877765
No 434
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=25.23 E-value=1.2e+02 Score=27.87 Aligned_cols=40 Identities=30% Similarity=0.212 Sum_probs=30.8
Q ss_pred CCCccEEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 036520 1 MARKLHVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPK 42 (473)
Q Consensus 1 m~~~~~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~ 42 (473)
|++ .|.+.-=|+-|-..-...||..|+++|++|.++=.+.
T Consensus 1 m~~--iIav~~KGGVGKTT~~~nLA~~la~~G~kVLliD~Dp 40 (270)
T PRK13185 1 MAL--VLAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQIGCDP 40 (270)
T ss_pred Cce--EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeccC
Confidence 544 3455544677999999999999999999999885443
No 435
>COG4081 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.20 E-value=1.3e+02 Score=24.20 Aligned_cols=33 Identities=21% Similarity=0.105 Sum_probs=25.9
Q ss_pred cCCCccChHHHHHHHHHHHhCCCeEEEEeCCCc
Q 036520 11 PWSAFGHLMPFFQLSIALAKSGVKVSFISTPKN 43 (473)
Q Consensus 11 ~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~ 43 (473)
|.-..-.+...+=+...|..+|.+||++.++..
T Consensus 11 CPeiP~qissaiYls~klkkkgf~v~VaateAa 43 (148)
T COG4081 11 CPEIPPQISSAIYLSHKLKKKGFDVTVAATEAA 43 (148)
T ss_pred CCCCCccchHHHHHHHHhhccCccEEEecCHhh
Confidence 333556677788889999999999999987653
No 436
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=25.07 E-value=74 Score=30.09 Aligned_cols=41 Identities=27% Similarity=0.252 Sum_probs=31.6
Q ss_pred HHhhCCCcceeeeccCchhHHHHHh----hCCceecccccccccc
Q 036520 355 EILAHPSIGTSLFHAGWGSVIETLQ----FGHSLVVLPLIIDQPL 395 (473)
Q Consensus 355 ~ll~~~~~~~~ItHGG~~s~~eal~----~GvP~l~~P~~~DQ~~ 395 (473)
+-|..-+++.+|.=||.+|...|.. +++|+|++|-..|=..
T Consensus 85 ~~l~~~~Id~Li~IGGdgs~~~a~~L~e~~~i~vigiPkTIDNDl 129 (301)
T TIGR02482 85 ENLKKLGIEGLVVIGGDGSYTGAQKLYEEGGIPVIGLPGTIDNDI 129 (301)
T ss_pred HHHHHcCCCEEEEeCCchHHHHHHHHHHhhCCCEEeecccccCCC
Confidence 3455667778999999999877753 7999999998765443
No 437
>KOG1344 consensus Predicted histone deacetylase [Chromatin structure and dynamics]
Probab=24.85 E-value=2.2e+02 Score=25.53 Aligned_cols=44 Identities=9% Similarity=0.108 Sum_probs=29.0
Q ss_pred hhHHHHHHHhCCCcEEEEcCCc--------------ch--------HHHHHHHcCCCeEEEecchh
Q 036520 105 QHPFKQFVAQQSVDWIIVDVMS--------------HW--------AGKIAQEYHVPLLLFSAFSA 148 (473)
Q Consensus 105 ~~~l~~ll~~~~pD~vI~D~~~--------------~~--------~~~~A~~lgiP~v~~~~~~~ 148 (473)
.+.+.+-+++.+||+||+..-+ +. ....++.+|||.+.+.++..
T Consensus 237 ~r~l~~sl~ef~Pd~VvYNAGTDiLeGDpLG~L~ISp~Gi~~RDelVFr~~R~~~iPvvMltSGGY 302 (324)
T KOG1344|consen 237 KRCLMQSLAEFRPDMVVYNAGTDILEGDPLGNLAISPEGIIERDELVFRTFRALGIPVVMLTSGGY 302 (324)
T ss_pred HHHHHHHHHhhCCcEEEEeCCCccccCCCCCCeeecccccchhhHHHHHHHHHcCCcEEEEecCce
Confidence 4455566677899999975321 11 22457889999998766544
No 438
>PRK06487 glycerate dehydrogenase; Provisional
Probab=24.79 E-value=2.4e+02 Score=26.87 Aligned_cols=61 Identities=18% Similarity=0.132 Sum_probs=39.8
Q ss_pred CCcEEEEeecCcccCCHHHHHHHHHHHhcCCCCEEEEEcCCCCCCCccccCchhhhhhcCCCceEEecccchHHHhhCCC
Q 036520 282 PRSVVFVGFGSECKLSKDQVYEIAYGLELSGLPFLWALRKPEWATDDVDALPLGFADTIRGKGIVSIGWAPQLEILAHPS 361 (473)
Q Consensus 282 ~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~ll~~~~ 361 (473)
.+.+-.+++|.++ +.+++-++..|.+++..-+.. -+. . ..++.-.++|+.++
T Consensus 148 gktvgIiG~G~IG-------~~vA~~l~~fgm~V~~~~~~~---------~~~---------~---~~~~~l~ell~~sD 199 (317)
T PRK06487 148 GKTLGLLGHGELG-------GAVARLAEAFGMRVLIGQLPG---------RPA---------R---PDRLPLDELLPQVD 199 (317)
T ss_pred CCEEEEECCCHHH-------HHHHHHHhhCCCEEEEECCCC---------Ccc---------c---ccccCHHHHHHhCC
Confidence 3558999999988 566666667788876532211 001 1 13457789999999
Q ss_pred cceeeeccCch
Q 036520 362 IGTSLFHAGWG 372 (473)
Q Consensus 362 ~~~~ItHGG~~ 372 (473)
+ ++.|.-.+
T Consensus 200 i--v~l~lPlt 208 (317)
T PRK06487 200 A--LTLHCPLT 208 (317)
T ss_pred E--EEECCCCC
Confidence 8 88876543
No 439
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=24.75 E-value=89 Score=27.85 Aligned_cols=41 Identities=22% Similarity=0.216 Sum_probs=30.8
Q ss_pred EEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCCccccC
Q 036520 7 VVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPKNIQRL 47 (473)
Q Consensus 7 vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~ 47 (473)
+++.-.++.|=..-++.++...+++|+.|.+++.....+.+
T Consensus 19 ~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l 59 (224)
T TIGR03880 19 IVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERI 59 (224)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHH
Confidence 45555567787778888888877889999999987755444
No 440
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=24.61 E-value=1.7e+02 Score=30.59 Aligned_cols=81 Identities=16% Similarity=-0.017 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhcCCCCEEEEEcCCCCCCCccccCchhhhhhc-CCCceEEecccc-hH-----HHhh--CCCcceeeecc
Q 036520 299 DQVYEIAYGLELSGLPFLWALRKPEWATDDVDALPLGFADTI-RGKGIVSIGWAP-QL-----EILA--HPSIGTSLFHA 369 (473)
Q Consensus 299 ~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~-~~~nv~~~~~~p-q~-----~ll~--~~~~~~~ItHG 369 (473)
..-+.+++.|++.|.+.++.+.++... .+...+ +.+++.+..... +. +-+. .-..+++++|.
T Consensus 10 ~~a~~l~~~L~~~GV~~vFgvpG~~~~---------~l~~~l~~~~~i~~v~~~hE~~A~~aAdgyar~tg~~~v~~vt~ 80 (568)
T PRK07449 10 LWAAVILEELTRLGVRHVVIAPGSRST---------PLTLAAAEHPRLRLHTHFDERSAGFLALGLAKASKRPVAVIVTS 80 (568)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCccH---------HHHHHHHhCCCcEEEeecCcccHHHHHHHHHHhhCCCEEEEECC
Confidence 334557777777777777777665321 111111 222333322211 11 1111 11233478877
Q ss_pred Cc------hhHHHHHhhCCceeccc
Q 036520 370 GW------GSVIETLQFGHSLVVLP 388 (473)
Q Consensus 370 G~------~s~~eal~~GvP~l~~P 388 (473)
|- +.+.||-..++|||++.
T Consensus 81 GpG~~N~l~~i~~A~~~~~Pvl~Is 105 (568)
T PRK07449 81 GTAVANLYPAVIEAGLTGVPLIVLT 105 (568)
T ss_pred ccHHHhhhHHHHHHhhcCCcEEEEE
Confidence 74 47899999999999995
No 441
>PTZ00123 phosphoglycerate mutase like-protein; Provisional
Probab=24.57 E-value=1.1e+02 Score=27.64 Aligned_cols=62 Identities=5% Similarity=-0.160 Sum_probs=38.3
Q ss_pred eeeccCchhHHHHHhhCCceeccccccccccceee--eeec-ceEEEEecCCCCCcCHHHHHHHHHHHhc
Q 036520 365 SLFHAGWGSVIETLQFGHSLVVLPLIIDQPLNARL--LVDK-DLAVQVERKDDGSFTRDGIAKALRLATV 431 (473)
Q Consensus 365 ~ItHGG~~s~~eal~~GvP~l~~P~~~DQ~~na~~--v~~~-G~G~~l~~~~~~~~t~~~l~~~i~~ll~ 431 (473)
+|||||...+.-+...|.|.--. +.-+..|+.. ++-- +.+...... .+..|+|...+..+-.
T Consensus 166 iVsHG~vir~ll~~l~~~~~~~~--~~~~~~n~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 230 (236)
T PTZ00123 166 VAAHGNSLRALVKYLDKMSEEDI--LELNIPTGVPLVYELDENLKPIKKYY---LLDEEELKAKMEAVAN 230 (236)
T ss_pred EEeCHHHHHHHHHHHhCCCHHHH--hhccCCCCceEEEEECCCCCEeeeee---cCCHHHHHHHHHHHHh
Confidence 89999998888888888774322 2223444442 2212 555555554 5677777777766544
No 442
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=24.40 E-value=1.6e+02 Score=26.88 Aligned_cols=41 Identities=20% Similarity=0.319 Sum_probs=30.2
Q ss_pred hhHHHHHHHhCCCcEEEEcCCcc------hHHHHHHHcCCCeEEEec
Q 036520 105 QHPFKQFVAQQSVDWIIVDVMSH------WAGKIAQEYHVPLLLFSA 145 (473)
Q Consensus 105 ~~~l~~ll~~~~pD~vI~D~~~~------~~~~~A~~lgiP~v~~~~ 145 (473)
.+.+.+++++.+.|+||=-.+.+ -++.+|+..|||++.+-.
T Consensus 55 ~e~l~~~l~e~~i~llIDATHPyAa~iS~Na~~aake~gipy~r~eR 101 (257)
T COG2099 55 AEGLAAFLREEGIDLLIDATHPYAARISQNAARAAKETGIPYLRLER 101 (257)
T ss_pred HHHHHHHHHHcCCCEEEECCChHHHHHHHHHHHHHHHhCCcEEEEEC
Confidence 34678899999999988433333 344689999999999844
No 443
>PF03401 TctC: Tripartite tricarboxylate transporter family receptor; InterPro: IPR005064 Bordetella pertussis, the causative agent of human whooping cough (pertussis), is an obligate human pathogen with diverse high-affinity transport systems for the assimilation of iron, a biometal that is essential for growth []. Periplasmic binding proteins of a new family, particularly well represented in this organism (and more generally in beta-proteobacteria), have been called Bug receptors []. They adopt a characteristic Venus flytrap fold with two globular domains bisected by a ligand-binding cleft. The family is specific for carboxylated solutes, with a characteristic mode of binding involving two highly conserved beta strand-beta turn-alpha helix motifs originating from each domain. These two motifs form hydrogen bonds with a carboxylate group of the ligand, both directly and via conserved water molecules, and have thus been termed the carboxylate pincers. Domain 1 recognises the ligand and the carboxylate group serves as an initial anchoring point. Domain 2 discriminates between productively and non-productively bound ligands as proper interactions with this domain is needed for the of the closed conformation []. BugE has a glutamate bound ligand. No charged residues are involved in glutamate binding by BugE, unlike what has been described for all glutamate receptors reported so far. The Bug architecture is highly conserved despite limited sequence identity [].; GO: 0030288 outer membrane-bounded periplasmic space; PDB: 2QPQ_C 2DVZ_A 2F5X_A.
Probab=24.38 E-value=1e+02 Score=28.66 Aligned_cols=58 Identities=10% Similarity=0.015 Sum_probs=31.6
Q ss_pred ccccccccc-ceeeeeecceEEEEecCCCCCcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHhc
Q 036520 387 LPLIIDQPL-NARLLVDKDLAVQVERKDDGSFTRDGIAKALRLATVSEEGEKLRVRAREAANTFN 450 (473)
Q Consensus 387 ~P~~~DQ~~-na~~v~~~G~G~~l~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~ 450 (473)
+|.+.||-. .-....+. |+..++.. +.--.+.|.++++++++ +++|++.+++..-...
T Consensus 189 vPT~~E~G~~d~~~~~~~--g~~~p~gt-p~~~~~~l~~a~~~~~~---~pe~~~~~~~~g~~~~ 247 (274)
T PF03401_consen 189 VPTFKEQGYPDIVFGSWR--GLFAPKGT-PDEIVDKLADAIKKALE---DPEFQEFLEKMGLEPV 247 (274)
T ss_dssp S-BTTTTT-TTG--EEEE--EEEEETTS--HHHHHHHHHHHHHHHT----HHHHHHHHHHTEEEE
T ss_pred CCCHHHhCccceeeeeee--eeecCCCC-CHHHHHHHHHHHHHHhC---CHHHHHHHHHCCCcCC
Confidence 455667743 33333343 44455530 01223567778888888 8999998888665543
No 444
>PRK13055 putative lipid kinase; Reviewed
Probab=24.33 E-value=2.7e+02 Score=26.68 Aligned_cols=26 Identities=15% Similarity=0.271 Sum_probs=21.0
Q ss_pred eeeeccCchhHHHHHhh------CCceecccc
Q 036520 364 TSLFHAGWGSVIETLQF------GHSLVVLPL 389 (473)
Q Consensus 364 ~~ItHGG~~s~~eal~~------GvP~l~~P~ 389 (473)
++|--||-||+.|++.. .+|+-++|.
T Consensus 62 ~vvv~GGDGTl~evvngl~~~~~~~~LgiiP~ 93 (334)
T PRK13055 62 LIIAAGGDGTINEVVNGIAPLEKRPKMAIIPA 93 (334)
T ss_pred EEEEECCCCHHHHHHHHHhhcCCCCcEEEECC
Confidence 39999999999998743 467888885
No 445
>PRK13337 putative lipid kinase; Reviewed
Probab=24.25 E-value=2.3e+02 Score=26.66 Aligned_cols=27 Identities=19% Similarity=0.266 Sum_probs=21.4
Q ss_pred ceeeeccCchhHHHHHhh------CCceecccc
Q 036520 363 GTSLFHAGWGSVIETLQF------GHSLVVLPL 389 (473)
Q Consensus 363 ~~~ItHGG~~s~~eal~~------GvP~l~~P~ 389 (473)
+.+|.-||-||+.|++.. ..|+-++|.
T Consensus 59 d~vvv~GGDGTl~~vv~gl~~~~~~~~lgiiP~ 91 (304)
T PRK13337 59 DLVIAAGGDGTLNEVVNGIAEKENRPKLGIIPV 91 (304)
T ss_pred CEEEEEcCCCHHHHHHHHHhhCCCCCcEEEECC
Confidence 349999999999999862 347888885
No 446
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=24.24 E-value=1.9e+02 Score=30.46 Aligned_cols=27 Identities=22% Similarity=0.241 Sum_probs=21.7
Q ss_pred cceeeeccCc------hhHHHHHhhCCceeccc
Q 036520 362 IGTSLFHAGW------GSVIETLQFGHSLVVLP 388 (473)
Q Consensus 362 ~~~~ItHGG~------~s~~eal~~GvP~l~~P 388 (473)
.+++++|.|- +.+++|...++|||++.
T Consensus 75 ~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~i~ 107 (595)
T PRK09107 75 PGVVLVTSGPGATNAVTPLQDALMDSIPLVCIT 107 (595)
T ss_pred CEEEEECCCccHhHHHHHHHHHhhcCCCEEEEE
Confidence 4448888774 47889999999999985
No 447
>PF14626 RNase_Zc3h12a_2: Zc3h12a-like Ribonuclease NYN domain
Probab=24.20 E-value=85 Score=24.81 Aligned_cols=31 Identities=6% Similarity=0.046 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHhCCCeEEEEeCCCccccCC
Q 036520 18 LMPFFQLSIALAKSGVKVSFISTPKNIQRLP 48 (473)
Q Consensus 18 ~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~ 48 (473)
+.+++.+.-.+.-+||++|++-+..+.+.+.
T Consensus 9 Vk~L~eIll~FilrGHKT~vyLP~yY~~~~~ 39 (122)
T PF14626_consen 9 VKALVEILLHFILRGHKTVVYLPKYYKNYVD 39 (122)
T ss_pred HHHHHHHHHHHHhccCeeEEEChHHHhcccc
Confidence 4678888888888999999999877665443
No 448
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=24.13 E-value=1.1e+02 Score=31.00 Aligned_cols=34 Identities=12% Similarity=0.130 Sum_probs=26.5
Q ss_pred HHHHHHHhCCCcEEEEcCCcchHHHHHHHcCCCeEEE
Q 036520 107 PFKQFVAQQSVDWIIVDVMSHWAGKIAQEYHVPLLLF 143 (473)
Q Consensus 107 ~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~ 143 (473)
++.+++++.+||++|... ....+|+++|||++.+
T Consensus 386 e~~~~i~~~~pDl~ig~~---~~~~~a~k~giP~i~~ 419 (456)
T TIGR01283 386 ELLKLLLEYKADLLIAGG---KERYTALKLGIPFCDI 419 (456)
T ss_pred HHHHHHhhcCCCEEEEcc---chHHHHHhcCCCEEEc
Confidence 456677778999999863 3467788999998875
No 449
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=24.09 E-value=5.5e+02 Score=29.35 Aligned_cols=39 Identities=23% Similarity=0.276 Sum_probs=28.2
Q ss_pred ccEEEEecCCCc--c----ChHHHHHHHHHHHhCCCeEEEEeCCC
Q 036520 4 KLHVVMLPWSAF--G----HLMPFFQLSIALAKSGVKVSFISTPK 42 (473)
Q Consensus 4 ~~~vl~~~~~~~--g----H~~p~l~la~~L~~~Gh~Vt~~~~~~ 42 (473)
+.+|+++=.+.. | .=+-+++++++|++.||+|.++....
T Consensus 555 ~kkvLIlG~G~~rig~~~efdy~~v~~~~aLk~~G~~vI~vn~np 599 (1068)
T PRK12815 555 KKKVLILGSGPIRIGQGIEFDYSSVHAAFALKKEGYETIMINNNP 599 (1068)
T ss_pred CceEEEecccccccccccccchhHHHHHHHHHHcCCEEEEEeCCc
Confidence 457777665532 2 22478999999999999998887543
No 450
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=24.06 E-value=1.3e+02 Score=23.66 Aligned_cols=34 Identities=21% Similarity=0.081 Sum_probs=29.8
Q ss_pred EEEecCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 036520 7 VVMLPWSAFGHLMPFFQLSIALAKSGVKVSFIST 40 (473)
Q Consensus 7 vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~ 40 (473)
++..+.++..|-....-++..|.++|++|.++..
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~ 35 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGV 35 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCC
Confidence 5677788889999999999999999999998853
No 451
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=23.88 E-value=1.5e+02 Score=27.33 Aligned_cols=41 Identities=10% Similarity=0.122 Sum_probs=31.0
Q ss_pred hhHHHHHHHhCCCcEEEEc-----C-CcchHHHHHHHcCCCeEEEec
Q 036520 105 QHPFKQFVAQQSVDWIIVD-----V-MSHWAGKIAQEYHVPLLLFSA 145 (473)
Q Consensus 105 ~~~l~~ll~~~~pD~vI~D-----~-~~~~~~~~A~~lgiP~v~~~~ 145 (473)
...+.+.++..++|+|++- . ..--+..+|+.||+|++++..
T Consensus 100 a~~Laa~~~~~~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~t~v~ 146 (260)
T COG2086 100 AKALAAAVKKIGPDLVLTGKQAIDGDTGQVGPLLAELLGWPQVTYVS 146 (260)
T ss_pred HHHHHHHHHhcCCCEEEEecccccCCccchHHHHHHHhCCceeeeEE
Confidence 3456777888899999964 2 224677899999999998755
No 452
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=23.86 E-value=1.4e+02 Score=26.01 Aligned_cols=33 Identities=21% Similarity=0.283 Sum_probs=24.0
Q ss_pred CCCcEEE-EcCCc-chHHHHHHHcCCCeEEEecch
Q 036520 115 QSVDWII-VDVMS-HWAGKIAQEYHVPLLLFSAFS 147 (473)
Q Consensus 115 ~~pD~vI-~D~~~-~~~~~~A~~lgiP~v~~~~~~ 147 (473)
..||+|| .|+.. ..+..=|.++|||.|.+.-+.
T Consensus 126 ~~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dtn 160 (193)
T cd01425 126 RLPDLVIVLDPRKEHQAIREASKLGIPVIAIVDTN 160 (193)
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEecCC
Confidence 4799765 55533 466677999999999986644
No 453
>TIGR01860 VNFD nitrogenase vanadium-iron protein, alpha chain. This model represents the alpha chain of the vanadium-containing component of the vanadium-iron nitrogenase compound I. The complex also includes a second alpha chain, two beta chains and two delta chains. Compount I interacts with compound II also known as the iron-protein which transfers electrons to compound I where the catalysis occurs.
Probab=23.79 E-value=95 Score=31.46 Aligned_cols=30 Identities=17% Similarity=0.341 Sum_probs=23.3
Q ss_pred HHHHHhCCCcEEEEcCCcchHHHHHHHcCCCeE
Q 036520 109 KQFVAQQSVDWIIVDVMSHWAGKIAQEYHVPLL 141 (473)
Q Consensus 109 ~~ll~~~~pD~vI~D~~~~~~~~~A~~lgiP~v 141 (473)
.+.+++.+||++|... .+..+|+++|||++
T Consensus 390 ~~~~~~~~pDliig~s---~~~~~A~klgiP~v 419 (461)
T TIGR01860 390 FEVLDLIKPDVIFTGP---RVGELVKKLHIPYV 419 (461)
T ss_pred HHHHHhcCCCEEEeCC---cchhhHhhcCCCEE
Confidence 3455677899999885 34558999999998
No 454
>PLN02293 adenine phosphoribosyltransferase
Probab=23.78 E-value=2.1e+02 Score=24.84 Aligned_cols=41 Identities=7% Similarity=-0.105 Sum_probs=28.9
Q ss_pred hhhhHHHHHHHhCCCcEEEEcC--CcchHHHHHHHcCCCeEEE
Q 036520 103 LLQHPFKQFVAQQSVDWIIVDV--MSHWAGKIAQEYHVPLLLF 143 (473)
Q Consensus 103 ~~~~~l~~ll~~~~pD~vI~D~--~~~~~~~~A~~lgiP~v~~ 143 (473)
...+.+.+.+++.++|+|++=. -...|..+|..+|+|++.+
T Consensus 49 ~~~~~l~~~~~~~~~d~Ivg~e~~Gi~lA~~lA~~Lg~p~v~~ 91 (187)
T PLN02293 49 DTIDLFVERYRDMGISVVAGIEARGFIFGPPIALAIGAKFVPL 91 (187)
T ss_pred HHHHHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHCCCEEEE
Confidence 3455555666667889888542 2346778999999998865
No 455
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=23.67 E-value=98 Score=29.31 Aligned_cols=34 Identities=21% Similarity=0.226 Sum_probs=26.5
Q ss_pred CccEEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 036520 3 RKLHVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTP 41 (473)
Q Consensus 3 ~~~~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 41 (473)
.+|+|.|+=.|..| ..+|+.|.++||+|+++...
T Consensus 3 ~~m~I~iiG~G~~G-----~~lA~~l~~~G~~V~~~~r~ 36 (308)
T PRK14619 3 QPKTIAILGAGAWG-----STLAGLASANGHRVRVWSRR 36 (308)
T ss_pred CCCEEEEECccHHH-----HHHHHHHHHCCCEEEEEeCC
Confidence 46888888555544 47899999999999988754
No 456
>COG1553 DsrE Uncharacterized conserved protein involved in intracellular sulfur reduction [Inorganic ion transport and metabolism]
Probab=23.62 E-value=1.9e+02 Score=23.14 Aligned_cols=38 Identities=13% Similarity=0.274 Sum_probs=25.8
Q ss_pred cEE-EEecCCCccC--hHHHHHHHHHHHhCC-CeEEEEeCCC
Q 036520 5 LHV-VMLPWSAFGH--LMPFFQLSIALAKSG-VKVSFISTPK 42 (473)
Q Consensus 5 ~~v-l~~~~~~~gH--~~p~l~la~~L~~~G-h~Vt~~~~~~ 42 (473)
|++ +++..|.||+ ....+.+|++|.+.| ++|.++--.+
T Consensus 1 m~~~Ivvt~ppYg~q~a~~A~~fA~all~~gh~~v~iFly~D 42 (126)
T COG1553 1 MKYTIVVTGPPYGTESAFSALRFAEALLEQGHELVRLFLYQD 42 (126)
T ss_pred CeEEEEEecCCCccHHHHHHHHHHHHHHHcCCeEEEEEEeec
Confidence 344 4466677775 456888899999996 6777655433
No 457
>cd00501 Peptidase_C15 Pyroglutamyl peptidase (PGP) type I, also known as pyrrolidone carboxyl peptidase (pcp) type I: Enzymes responsible for cleaving pyroglutamate (pGlu) from the N-terminal end of specialized proteins. The N-terminal pGlu protects these proteins from proteolysis by other proteases until the pGlu is removed by a PGP. PGPs are cysteine proteases with a Cys-His-Glu/Asp catalytic triad. Type I PGPs are found in a wide variety of prokaryotes and eukaryotes. It is not clear whether the functional form is a monomer, a homodimer, or a homotetramer.
Probab=23.61 E-value=2.6e+02 Score=24.38 Aligned_cols=27 Identities=22% Similarity=0.372 Sum_probs=19.3
Q ss_pred cEEEEecCCCcc--ChHHHHHHHHHHHhC
Q 036520 5 LHVVMLPWSAFG--HLMPFFQLSIALAKS 31 (473)
Q Consensus 5 ~~vl~~~~~~~g--H~~p~l~la~~L~~~ 31 (473)
|+|++.-|+-++ -.||...++++|...
T Consensus 1 ~~vLvTGF~PF~~~~~NpS~~~v~~L~~~ 29 (194)
T cd00501 1 KKVLVTGFGPFGGEPVNPSWEAVKELPKL 29 (194)
T ss_pred CEEEEEecCCCCCCCCChHHHHHHhcccc
Confidence 567776665443 478999999999653
No 458
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=23.60 E-value=98 Score=23.87 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCC
Q 036520 19 MPFFQLSIALAKSGVKVSFISTP 41 (473)
Q Consensus 19 ~p~l~la~~L~~~Gh~Vt~~~~~ 41 (473)
.|.+.|+++|.++|.+|.+.=+-
T Consensus 17 Sp~~~l~~~L~~~g~~V~~~DP~ 39 (106)
T PF03720_consen 17 SPALELIEELKERGAEVSVYDPY 39 (106)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-TT
T ss_pred CHHHHHHHHHHHCCCEEEEECCc
Confidence 68999999999999998887653
No 459
>PRK05246 glutathione synthetase; Provisional
Probab=23.45 E-value=1e+02 Score=29.28 Aligned_cols=40 Identities=8% Similarity=0.009 Sum_probs=31.4
Q ss_pred cEEEEecCCCc---cChHHHHHHHHHHHhCCCeEEEEeCCCcc
Q 036520 5 LHVVMLPWSAF---GHLMPFFQLSIALAKSGVKVSFISTPKNI 44 (473)
Q Consensus 5 ~~vl~~~~~~~---gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~ 44 (473)
|||+|+.-+-. -..+....|+++-.++||+|.++++....
T Consensus 2 ~~~~~~~~~~~~~~~~~~st~~l~~aa~~~G~~v~~~~~~dl~ 44 (316)
T PRK05246 2 MKVAFQMDPIESINIKKDSTFAMMLEAQRRGHELFYYEPDDLS 44 (316)
T ss_pred ceEEEEeCCHHHCCCCCChHHHHHHHHHHcCCEEEEEehhhcE
Confidence 68888876533 45567888999999999999999976543
No 460
>PRK02399 hypothetical protein; Provisional
Probab=23.36 E-value=6.3e+02 Score=25.03 Aligned_cols=90 Identities=17% Similarity=0.150 Sum_probs=55.8
Q ss_pred CCcEEEEeecCcccCCHHHHHHHHHHHhcCCCCEEEEEcCCCCCCCccccCchhhhhhcCCCceE-EecccchH---HHh
Q 036520 282 PRSVVFVGFGSECKLSKDQVYEIAYGLELSGLPFLWALRKPEWATDDVDALPLGFADTIRGKGIV-SIGWAPQL---EIL 357 (473)
Q Consensus 282 ~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~-~~~~~pq~---~ll 357 (473)
+||.|-+|+ +.....-+..+.+.|++.|+.+++....+... ..+++-+.++-+. +.+...++ .+.
T Consensus 185 ~kp~Ig~Tm---fGvTtp~v~~~~~~Le~~GyEvlVFHATG~GG--------raME~Li~~G~~~gVlDlTttEv~d~l~ 253 (406)
T PRK02399 185 DKPLIGLTM---FGVTTPCVQAAREELEARGYEVLVFHATGTGG--------RAMEKLIDSGLIAGVLDLTTTEVCDELF 253 (406)
T ss_pred CCceEEEec---CCCcHHHHHHHHHHHHhCCCeEEEEcCCCCch--------HHHHHHHHcCCceEEEEcchHHHHHHHh
Confidence 466777765 33345778888888999999988876654332 1333333333222 33444442 222
Q ss_pred hCCCcceeeeccCchhHHHHHhhCCceeccc
Q 036520 358 AHPSIGTSLFHAGWGSVIETLQFGHSLVVLP 388 (473)
Q Consensus 358 ~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P 388 (473)
+ =|..+|-.=...|...|+|+|+.|
T Consensus 254 -----G-Gv~sagp~Rl~Aa~~~gIP~Vvs~ 278 (406)
T PRK02399 254 -----G-GVLAAGPDRLEAAARTGIPQVVSP 278 (406)
T ss_pred -----C-cCccCCccHHHHHHHcCCCEEecC
Confidence 1 244567777888999999999887
No 461
>PRK10490 sensor protein KdpD; Provisional
Probab=23.24 E-value=1e+02 Score=34.26 Aligned_cols=37 Identities=19% Similarity=0.221 Sum_probs=33.6
Q ss_pred CccEEEEecCCCccChHHHHHHHHHHHhCCCeEEEEe
Q 036520 3 RKLHVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFIS 39 (473)
Q Consensus 3 ~~~~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~ 39 (473)
.++||.+-..++-|-.+.|+.-|.+|.++|++|.+-.
T Consensus 23 g~l~i~~g~~~gvgkt~~ml~~a~~~~~~g~dvv~g~ 59 (895)
T PRK10490 23 GKLKIFFGACAGVGKTYAMLQEAQRLRAQGLDVLVGV 59 (895)
T ss_pred CcEEEEeecCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 3579999999999999999999999999999998654
No 462
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=23.16 E-value=1.5e+02 Score=30.92 Aligned_cols=27 Identities=26% Similarity=0.417 Sum_probs=21.8
Q ss_pred cceeeeccCch------hHHHHHhhCCceeccc
Q 036520 362 IGTSLFHAGWG------SVIETLQFGHSLVVLP 388 (473)
Q Consensus 362 ~~~~ItHGG~~------s~~eal~~GvP~l~~P 388 (473)
.+++++|.|-| .+.+|.+.++|+|++.
T Consensus 68 ~gv~~~t~GpG~~N~l~~i~~A~~~~~Pvlvi~ 100 (574)
T PRK06882 68 VGCVLVTSGPGATNAITGIATAYTDSVPLVILS 100 (574)
T ss_pred CeEEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 44488887754 6889999999999984
No 463
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=23.16 E-value=1.8e+02 Score=30.53 Aligned_cols=27 Identities=15% Similarity=0.166 Sum_probs=21.9
Q ss_pred cceeeeccCc------hhHHHHHhhCCceeccc
Q 036520 362 IGTSLFHAGW------GSVIETLQFGHSLVVLP 388 (473)
Q Consensus 362 ~~~~ItHGG~------~s~~eal~~GvP~l~~P 388 (473)
.+++++|.|- +.+.+|...++|+|++.
T Consensus 69 ~gv~~~t~GPG~~n~~~gi~~A~~~~~Pvl~I~ 101 (588)
T PRK07525 69 MGMVIGQNGPGITNFVTAVATAYWAHTPVVLVT 101 (588)
T ss_pred CEEEEEcCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 4448888874 47788999999999996
No 464
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.11 E-value=1.6e+02 Score=26.64 Aligned_cols=43 Identities=21% Similarity=0.323 Sum_probs=28.8
Q ss_pred HHhhhhhHHHHHHHhC-CCcEEEEcCCcc---hHHHHHHHcCCCeEE
Q 036520 100 AYDLLQHPFKQFVAQQ-SVDWIIVDVMSH---WAGKIAQEYHVPLLL 142 (473)
Q Consensus 100 ~~~~~~~~l~~ll~~~-~pD~vI~D~~~~---~~~~~A~~lgiP~v~ 142 (473)
.+.+-.+.+..++++. +-++.+.|..+. -+..+|+..|||++.
T Consensus 132 ~~tsn~~aM~~~m~~Lk~r~l~flDs~T~a~S~a~~iAk~~gVp~~~ 178 (250)
T COG2861 132 RFTSNEDAMEKLMEALKERGLYFLDSGTIANSLAGKIAKEIGVPVIK 178 (250)
T ss_pred hhcCcHHHHHHHHHHHHHCCeEEEcccccccchhhhhHhhcCCceee
Confidence 3333344555555554 458999997663 445789999999885
No 465
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=23.07 E-value=1.9e+02 Score=25.29 Aligned_cols=42 Identities=14% Similarity=0.086 Sum_probs=29.2
Q ss_pred hhhHHHHHHHhCCCcEEEEc-C-CcchHHHHHHHcCCCeEEEec
Q 036520 104 LQHPFKQFVAQQSVDWIIVD-V-MSHWAGKIAQEYHVPLLLFSA 145 (473)
Q Consensus 104 ~~~~l~~ll~~~~pD~vI~D-~-~~~~~~~~A~~lgiP~v~~~~ 145 (473)
....+.+.+++.++|+|++= . -...|..+|..+|+|.+...-
T Consensus 38 v~~~l~~~~~~~~~d~Vv~~ea~Gi~la~~lA~~Lg~p~v~vRK 81 (191)
T TIGR01744 38 VGEEFARRFADDGITKIVTIEASGIAPAIMTGLKLGVPVVFARK 81 (191)
T ss_pred HHHHHHHHhccCCCCEEEEEccccHHHHHHHHHHHCCCEEEEEe
Confidence 34445555566789999843 2 235677889999999998744
No 466
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=23.02 E-value=67 Score=29.51 Aligned_cols=44 Identities=25% Similarity=0.409 Sum_probs=34.6
Q ss_pred EEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCCccccCCC
Q 036520 6 HVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPKNIQRLPK 49 (473)
Q Consensus 6 ~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~ 49 (473)
.+++.=.++.|=..=+.++|.+|.++|+.|+|++.+++...+..
T Consensus 107 nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~ 150 (254)
T COG1484 107 NLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKA 150 (254)
T ss_pred cEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHH
Confidence 46666666666666678899999988999999999887766654
No 467
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=23.00 E-value=1.5e+02 Score=25.33 Aligned_cols=41 Identities=17% Similarity=0.256 Sum_probs=30.4
Q ss_pred hhHHHHHHHhCCCcEEEEcCCc---chHHHHHHHcCCCeEEEec
Q 036520 105 QHPFKQFVAQQSVDWIIVDVMS---HWAGKIAQEYHVPLLLFSA 145 (473)
Q Consensus 105 ~~~l~~ll~~~~pD~vI~D~~~---~~~~~~A~~lgiP~v~~~~ 145 (473)
.+.+.+++++.+||+|+.-.-. ..+..+|.++|.|+++-..
T Consensus 80 a~~l~~~i~~~~p~~Vl~g~t~~g~~la~rlA~~L~~~~vsdv~ 123 (181)
T cd01985 80 AKALAALIKKEKPDLILAGATSIGKQLAPRVAALLGVPQISDVT 123 (181)
T ss_pred HHHHHHHHHHhCCCEEEECCcccccCHHHHHHHHhCCCcceeEE
Confidence 4455667777789999987533 3677899999999987544
No 468
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=22.94 E-value=1.3e+02 Score=30.05 Aligned_cols=36 Identities=22% Similarity=0.227 Sum_probs=25.9
Q ss_pred HHHHHHHhCC----CcEEEEcCCcchHHHHHHHcCCCeEEEec
Q 036520 107 PFKQFVAQQS----VDWIIVDVMSHWAGKIAQEYHVPLLLFSA 145 (473)
Q Consensus 107 ~l~~ll~~~~----pD~vI~D~~~~~~~~~A~~lgiP~v~~~~ 145 (473)
.+.+.+++.+ ||+||.+. ....+|+++|+|++.++.
T Consensus 358 ~~~~~i~~~~~~~~~dliig~s---~~~~~a~~~~ip~i~~~~ 397 (427)
T cd01971 358 AIGQSLRQSDFKYKPPIIFGSS---WERDLAKELGGKILEVSF 397 (427)
T ss_pred HHHHHHHhCCCCCCCCEEEech---HHHHHHHHcCCCeEEEeC
Confidence 3445555554 99999985 456688899999987643
No 469
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=22.91 E-value=64 Score=25.77 Aligned_cols=27 Identities=33% Similarity=0.292 Sum_probs=20.5
Q ss_pred eeeeccCchhHHHHHhh----C-----Cceeccccc
Q 036520 364 TSLFHAGWGSVIETLQF----G-----HSLVVLPLI 390 (473)
Q Consensus 364 ~~ItHGG~~s~~eal~~----G-----vP~l~~P~~ 390 (473)
.+|.-||-||+.|++.. + +|+.++|..
T Consensus 52 ~vvv~GGDGTi~~vvn~l~~~~~~~~~~plgiiP~G 87 (124)
T smart00046 52 RVLVCGGDGTVGWVLNALDKRELPLPEPPVAVLPLG 87 (124)
T ss_pred EEEEEccccHHHHHHHHHHhcccccCCCcEEEeCCC
Confidence 48999999999998642 2 567777764
No 470
>TIGR03837 efp_adjacent_2 conserved hypothetical protein, PP_1857 family. This model describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=22.90 E-value=1.1e+02 Score=29.75 Aligned_cols=93 Identities=16% Similarity=0.162 Sum_probs=55.6
Q ss_pred ccCCHHHHHHHHHHHhcCCCCEEEEEcCCCCCCCccccCchh---hhhhcCCCc--eEEecccch---HHHhhCCCccee
Q 036520 294 CKLSKDQVYEIAYGLELSGLPFLWALRKPEWATDDVDALPLG---FADTIRGKG--IVSIGWAPQ---LEILAHPSIGTS 365 (473)
Q Consensus 294 ~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~p~~---~~~~~~~~n--v~~~~~~pq---~~ll~~~~~~~~ 365 (473)
+......+..+++++++.+.++...+..+.....-...++.. -......++ +.+.++++| ..||-.|++ =
T Consensus 188 F~Ye~~al~~ll~~~~~~~~pv~lLvp~Gr~~~~v~~~l~~~~~~~g~~~~~g~L~~~~LPf~~Q~~yD~LLW~cD~--N 265 (371)
T TIGR03837 188 FCYENAALPALLDALAQSGSPVHLLVPEGRALAAVAAWLGDALLAAGDVHRRGALTVAVLPFVPQDDYDRLLWACDL--N 265 (371)
T ss_pred EecCChhHHHHHHHHHhCCCCeEEEecCCccHHHHHHHhCccccCCccccccCceEEEEcCCCChhhHHHHHHhChh--c
Confidence 445667777788888777777666665443210000011100 001112233 456789998 789988887 3
Q ss_pred eeccCchhHHHHHhhCCcee--cccc
Q 036520 366 LFHAGWGSVIETLQFGHSLV--VLPL 389 (473)
Q Consensus 366 ItHGG~~s~~eal~~GvP~l--~~P~ 389 (473)
+-. |--|..-|.-+|+|.| |.|.
T Consensus 266 fVR-GEDSFVRAqWAgkPfvWhIYPQ 290 (371)
T TIGR03837 266 FVR-GEDSFVRAQWAGKPFVWHIYPQ 290 (371)
T ss_pred Eee-chhHHHHHHHcCCCceeecccC
Confidence 333 6789999999999987 4443
No 471
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=22.88 E-value=1.5e+02 Score=26.02 Aligned_cols=36 Identities=19% Similarity=0.390 Sum_probs=28.1
Q ss_pred cEEEEecCCCccChHHHHHH-HHHHHh-CCCeEEEEeC
Q 036520 5 LHVVMLPWSAFGHLMPFFQL-SIALAK-SGVKVSFIST 40 (473)
Q Consensus 5 ~~vl~~~~~~~gH~~p~l~l-a~~L~~-~Gh~Vt~~~~ 40 (473)
|+|+++-+..+||..-+... ++.+.+ .|++|.++.-
T Consensus 2 ~kilIvy~S~~G~T~~lA~~ia~g~~~~~G~ev~~~~l 39 (200)
T PRK03767 2 AKVLVLYYSMYGHIETMAEAVAEGAREVAGAEVTIKRV 39 (200)
T ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhhcCCcEEEEEec
Confidence 46988888889999998875 555555 7999988764
No 472
>PRK06847 hypothetical protein; Provisional
Probab=22.78 E-value=97 Score=30.08 Aligned_cols=35 Identities=26% Similarity=0.395 Sum_probs=26.8
Q ss_pred CCCccEEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 036520 1 MARKLHVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFIST 40 (473)
Q Consensus 1 m~~~~~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~ 40 (473)
|++..+|+|+=.+-.| +.+|..|+++|++|+++-.
T Consensus 1 m~~~~~V~IVGaG~aG-----l~~A~~L~~~g~~v~v~E~ 35 (375)
T PRK06847 1 MAAVKKVLIVGGGIGG-----LSAAIALRRAGIAVDLVEI 35 (375)
T ss_pred CCCcceEEEECCCHHH-----HHHHHHHHhCCCCEEEEec
Confidence 8888888887655444 5667778889999999853
No 473
>PRK10637 cysG siroheme synthase; Provisional
Probab=22.72 E-value=8e+02 Score=24.77 Aligned_cols=151 Identities=12% Similarity=0.012 Sum_probs=81.9
Q ss_pred cccCCCCCcEEEEeecCcccCCHHHHHHHHHHHhcCCCCEEEEEcCCCCCCCccccCchhhhhhcCCCceEEecccchHH
Q 036520 276 WLDEQKPRSVVFVGFGSECKLSKDQVYEIAYGLELSGLPFLWALRKPEWATDDVDALPLGFADTIRGKGIVSIGWAPQLE 355 (473)
Q Consensus 276 ~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~ 355 (473)
|++-.. +.++.|+-|..+ ..-++.|.+.|.++.++.+.- -+.+......+++....---+..
T Consensus 7 ~~~l~~-~~vlvvGgG~vA-------~rk~~~ll~~ga~v~visp~~----------~~~~~~l~~~~~i~~~~~~~~~~ 68 (457)
T PRK10637 7 FCQLRD-RDCLLVGGGDVA-------ERKARLLLDAGARLTVNALAF----------IPQFTAWADAGMLTLVEGPFDES 68 (457)
T ss_pred EEEcCC-CEEEEECCCHHH-------HHHHHHHHHCCCEEEEEcCCC----------CHHHHHHHhCCCEEEEeCCCChH
Confidence 344433 458888888765 222344555677777764321 12232223334554433222445
Q ss_pred HhhCCCcceeeeccCchhHHHHHh-----hCCceecccccccccc-----ceeeeeecceEEEEecCCCCCcCHHHHHHH
Q 036520 356 ILAHPSIGTSLFHAGWGSVIETLQ-----FGHSLVVLPLIIDQPL-----NARLLVDKDLAVQVERKDDGSFTRDGIAKA 425 (473)
Q Consensus 356 ll~~~~~~~~ItHGG~~s~~eal~-----~GvP~l~~P~~~DQ~~-----na~~v~~~G~G~~l~~~~~~~~t~~~l~~~ 425 (473)
.+..+.+ +|.--+.-.+.+.++ .|+++-+ .|++. .-..+++-++-+.+......-.-+..|++.
T Consensus 69 dl~~~~l--v~~at~d~~~n~~i~~~a~~~~~lvN~----~d~~~~~~f~~pa~~~~g~l~iaisT~G~sP~~a~~lr~~ 142 (457)
T PRK10637 69 LLDTCWL--AIAATDDDAVNQRVSEAAEARRIFCNV----VDAPKAASFIMPSIIDRSPLMVAVSSGGTSPVLARLLREK 142 (457)
T ss_pred HhCCCEE--EEECCCCHHHhHHHHHHHHHcCcEEEE----CCCcccCeEEEeeEEecCCEEEEEECCCCCcHHHHHHHHH
Confidence 5666666 777777666666654 3555433 34433 333444546777777653112334678888
Q ss_pred HHHHhcCcchHHHHHHHHHHHHHhcc
Q 036520 426 LRLATVSEEGEKLRVRAREAANTFND 451 (473)
Q Consensus 426 i~~ll~~~~~~~~~~~a~~~~~~~~~ 451 (473)
|++++. ++-..+.+.+.++++.+++
T Consensus 143 ie~~~~-~~~~~~~~~~~~~R~~~k~ 167 (457)
T PRK10637 143 LESLLP-QHLGQVAKYAGQLRGRVKQ 167 (457)
T ss_pred HHHhcc-hhHHHHHHHHHHHHHHHHH
Confidence 888875 1134566666667776653
No 474
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=22.70 E-value=1e+02 Score=27.64 Aligned_cols=33 Identities=15% Similarity=0.353 Sum_probs=23.4
Q ss_pred cEEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 036520 5 LHVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPK 42 (473)
Q Consensus 5 ~~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~ 42 (473)
|+++++=.+-.| ..+|+.|.+.||+|+.+-...
T Consensus 1 m~iiIiG~G~vG-----~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 1 MKIIIIGAGRVG-----RSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred CEEEEECCcHHH-----HHHHHHHHhCCCceEEEEcCH
Confidence 345555444333 679999999999999887544
No 475
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=22.69 E-value=1.9e+02 Score=22.75 Aligned_cols=37 Identities=19% Similarity=0.117 Sum_probs=31.9
Q ss_pred EEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 036520 6 HVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPK 42 (473)
Q Consensus 6 ~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~ 42 (473)
||++..-++.|=..-...+++.|+++|.+|.++..+.
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 4778888888999999999999999999999887655
No 476
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=22.64 E-value=1.5e+02 Score=24.94 Aligned_cols=37 Identities=16% Similarity=0.168 Sum_probs=28.0
Q ss_pred cEEEEecCCCccChHH-HHHHHHHHHhCCCeEEEEeCC
Q 036520 5 LHVVMLPWSAFGHLMP-FFQLSIALAKSGVKVSFISTP 41 (473)
Q Consensus 5 ~~vl~~~~~~~gH~~p-~l~la~~L~~~Gh~Vt~~~~~ 41 (473)
||+|++=..-.|...= .--+|..|.++||+|.+.-..
T Consensus 1 Mk~LIlYstr~GqT~kIA~~iA~~L~e~g~qvdi~dl~ 38 (175)
T COG4635 1 MKTLILYSTRDGQTRKIAEYIASHLRESGIQVDIQDLH 38 (175)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHhhhcCCeeeeeehh
Confidence 6777777767787765 445789999999999996543
No 477
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=22.60 E-value=90 Score=31.63 Aligned_cols=44 Identities=16% Similarity=0.127 Sum_probs=34.0
Q ss_pred cEEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCCccccCCC
Q 036520 5 LHVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPKNIQRLPK 49 (473)
Q Consensus 5 ~~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~ 49 (473)
.||++...++-+ .+=...+.+.|.++|++|.++.++....++..
T Consensus 71 k~IllgVtGsIA-ayka~~lvr~L~k~G~~V~VvmT~sA~~fv~p 114 (475)
T PRK13982 71 KRVTLIIGGGIA-AYKALDLIRRLKERGAHVRCVLTKAAQQFVTP 114 (475)
T ss_pred CEEEEEEccHHH-HHHHHHHHHHHHhCcCEEEEEECcCHHHHhhH
Confidence 467776665433 45789999999999999999998887766643
No 478
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=22.49 E-value=1.4e+02 Score=29.47 Aligned_cols=40 Identities=23% Similarity=0.207 Sum_probs=31.0
Q ss_pred CccEEEEecC--CCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 036520 3 RKLHVVMLPW--SAFGHLMPFFQLSIALAKSGVKVSFISTPK 42 (473)
Q Consensus 3 ~~~~vl~~~~--~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~ 42 (473)
.+++|+.+.. |+-|=..-.+.||..|+.+|++|.++=.+.
T Consensus 102 ~~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~Dp 143 (387)
T TIGR03453 102 EHLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAIDLDP 143 (387)
T ss_pred CCceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEEecCC
Confidence 3456655544 577888899999999999999999886544
No 479
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=22.48 E-value=1.4e+02 Score=27.32 Aligned_cols=31 Identities=29% Similarity=0.252 Sum_probs=26.2
Q ss_pred cCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 036520 11 PWSAFGHLMPFFQLSIALAKSGVKVSFISTP 41 (473)
Q Consensus 11 ~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 41 (473)
+-|+-|=..=...||..|++.|++|..+=-.
T Consensus 9 ~kGGvG~TTltAnLA~aL~~~G~~VlaID~d 39 (243)
T PF06564_consen 9 PKGGVGKTTLTANLAWALARLGESVLAIDLD 39 (243)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 3367799999999999999999999987543
No 480
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=22.43 E-value=2.2e+02 Score=29.93 Aligned_cols=27 Identities=19% Similarity=0.314 Sum_probs=21.7
Q ss_pred cceeeeccCc------hhHHHHHhhCCceeccc
Q 036520 362 IGTSLFHAGW------GSVIETLQFGHSLVVLP 388 (473)
Q Consensus 362 ~~~~ItHGG~------~s~~eal~~GvP~l~~P 388 (473)
.+++++|.|- +.+.+|.+.++|||++.
T Consensus 85 ~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~ 117 (587)
T PRK06965 85 VGVALVTSGPGVTNAVTGIATAYMDSIPMVVIS 117 (587)
T ss_pred CeEEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 3448888773 46889999999999996
No 481
>PRK13196 pyrrolidone-carboxylate peptidase; Provisional
Probab=22.39 E-value=2.4e+02 Score=25.10 Aligned_cols=26 Identities=19% Similarity=0.224 Sum_probs=19.3
Q ss_pred cEEEEecCCCcc--ChHHHHHHHHHHHh
Q 036520 5 LHVVMLPWSAFG--HLMPFFQLSIALAK 30 (473)
Q Consensus 5 ~~vl~~~~~~~g--H~~p~l~la~~L~~ 30 (473)
|+||+.-|.-+| ..||...++++|..
T Consensus 2 ~~ILvTGF~PF~~~~~NPS~~~~~~L~~ 29 (211)
T PRK13196 2 PTLLLTGFEPFHTHPVNPSAQAAQALNG 29 (211)
T ss_pred CEEEEEeecCCCCCCCCcHHHHHHhccc
Confidence 568776665443 58999999999954
No 482
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=22.34 E-value=3.9e+02 Score=26.82 Aligned_cols=31 Identities=13% Similarity=0.189 Sum_probs=23.9
Q ss_pred cEEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 036520 5 LHVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFIST 40 (473)
Q Consensus 5 ~~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~ 40 (473)
||||++-.++..| +|++.|++.|++|.++..
T Consensus 3 ~kVLvlG~G~re~-----al~~~l~~~g~~v~~~~~ 33 (435)
T PRK06395 3 MKVMLVGSGGRED-----AIARAIKRSGAILFSVIG 33 (435)
T ss_pred eEEEEECCcHHHH-----HHHHHHHhCCCeEEEEEC
Confidence 5899987777666 578889888987777644
No 483
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=22.29 E-value=3e+02 Score=23.83 Aligned_cols=125 Identities=8% Similarity=-0.010 Sum_probs=63.9
Q ss_pred ChHHHHHHHHHHHhC-CCeEEEEeCCCccccCCCCCCCcccCCCeEEEEecCCccccccccCCCCCCC--ccCCCCChhh
Q 036520 17 HLMPFFQLSIALAKS-GVKVSFISTPKNIQRLPKPAPESEVAALINFVEFPLPASAALDDKLLLPEGA--EATVDIPSEN 93 (473)
Q Consensus 17 H~~p~l~la~~L~~~-Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~l~~~~--~~~~~~~~~~ 93 (473)
.+..+-.+++.+.++ |.++.+-.+.+..+.++.+ .+-+..+..-....|.....++... .........
T Consensus 40 RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~gA--------DfVi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G- 110 (183)
T PF02056_consen 40 RLEIVERLARRMVEEAGADLKVEATTDRREALEGA--------DFVINQIRVGGLEAREIDEEIPLKYGIVGTIQETVG- 110 (183)
T ss_dssp HHHHHHHHHHHHHHHCTTSSEEEEESSHHHHHTTE--------SEEEE---TTHHHHHHHHHHTGGCCTTT-BTTSSST-
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhCCC--------CEEEEEeeecchHHHHHHHHHHHHhCCccccccccC-
Confidence 345567788888875 8888888777776666542 4444444322222121111222111 110011111
Q ss_pred HHHHHHHHhh--hhhHHHHHHHhCCCcEEEEcCCcchHH---HHHHHcC-CCeEEEecchhHH
Q 036520 94 IQYLKIAYDL--LQHPFKQFVAQQSVDWIIVDVMSHWAG---KIAQEYH-VPLLLFSAFSAAA 150 (473)
Q Consensus 94 ~~~~~~~~~~--~~~~l~~ll~~~~pD~vI~D~~~~~~~---~~A~~lg-iP~v~~~~~~~~~ 150 (473)
...+..+.+. ..-++.+.+++.-||.-|...-.+.+. .+.+..+ ++.|.++.++...
T Consensus 111 ~GG~~~alRtipv~~~ia~~i~~~~PdAw~iNytNP~~~vt~a~~r~~~~~k~vGlCh~~~~~ 173 (183)
T PF02056_consen 111 PGGFFRALRTIPVMLDIARDIEELCPDAWLINYTNPMGIVTEALSRYTPKIKVVGLCHGPQGT 173 (183)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTSEEEE-SSSHHHHHHHHHHHSTTSEEEEE-SHHHHH
T ss_pred ccHHHHHHhhHHHHHHHHHHHHHhCCCcEEEeccChHHHHHHHHHHhCCCCCEEEECCCHHHH
Confidence 1123333333 233445556777899888875554444 4566777 9999999876554
No 484
>PRK06756 flavodoxin; Provisional
Probab=22.22 E-value=1.5e+02 Score=24.26 Aligned_cols=36 Identities=14% Similarity=0.155 Sum_probs=28.3
Q ss_pred cEEEEecCCCccChHHHH-HHHHHHHhCCCeEEEEeC
Q 036520 5 LHVVMLPWSAFGHLMPFF-QLSIALAKSGVKVSFIST 40 (473)
Q Consensus 5 ~~vl~~~~~~~gH~~p~l-~la~~L~~~Gh~Vt~~~~ 40 (473)
|+|+++-+..+||..-+. .+++.|.+.|++|.+...
T Consensus 2 mkv~IiY~S~tGnTe~vA~~ia~~l~~~g~~v~~~~~ 38 (148)
T PRK06756 2 SKLVMIFASMSGNTEEMADHIAGVIRETENEIEVIDI 38 (148)
T ss_pred ceEEEEEECCCchHHHHHHHHHHHHhhcCCeEEEeeh
Confidence 578888788899998755 467888888999987643
No 485
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=22.22 E-value=11 Score=34.99 Aligned_cols=39 Identities=23% Similarity=0.462 Sum_probs=32.4
Q ss_pred ccCchh--HHHHHhhCCceeccccccccccceee-eeecceE
Q 036520 368 HAGWGS--VIETLQFGHSLVVLPLIIDQPLNARL-LVDKDLA 406 (473)
Q Consensus 368 HGG~~s--~~eal~~GvP~l~~P~~~DQ~~na~~-v~~~G~G 406 (473)
-||||+ +.-|-.+|+-++++-+..+|..+++. +.+.|+.
T Consensus 80 GCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~ 121 (283)
T COG2230 80 GCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLE 121 (283)
T ss_pred CCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCC
Confidence 367775 45566779999999999999999988 7777998
No 486
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=22.15 E-value=1.1e+02 Score=26.24 Aligned_cols=122 Identities=15% Similarity=0.147 Sum_probs=59.4
Q ss_pred cChHHHHHHHHHH-HhCCCeEEEEeCCCccccCCCCCCCcccCCCeEEEEecCCccccccccCCCCCCCcc-----CCCC
Q 036520 16 GHLMPFFQLSIAL-AKSGVKVSFISTPKNIQRLPKPAPESEVAALINFVEFPLPASAALDDKLLLPEGAEA-----TVDI 89 (473)
Q Consensus 16 gH~~p~l~la~~L-~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~l~~~~~~-----~~~~ 89 (473)
+.+.-.+..|+.| ...|.+|.+.-. ...+.+++. -++.++.++....++..-+......... ..+.
T Consensus 17 ~~~e~~v~~a~~~~~~~g~dViIsRG-~ta~~lr~~-------~~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~~~ 88 (176)
T PF06506_consen 17 ASLEEAVEEARQLLESEGADVIISRG-GTAELLRKH-------VSIPVVEIPISGFDILRALAKAKKYGPKIAVVGYPNI 88 (176)
T ss_dssp --HHHHHHHHHHHHTTTT-SEEEEEH-HHHHHHHCC--------SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEESS-
T ss_pred ecHHHHHHHHHHhhHhcCCeEEEECC-HHHHHHHHh-------CCCCEEEECCCHhHHHHHHHHHHhcCCcEEEEecccc
Confidence 5677789999999 788999887664 344445443 1566777775554332111111111100 0111
Q ss_pred ChhhHHHHHHHHhh--------hhhHHHHHH---HhCCCcEEEEcCCcchHHHHHHHcCCCeEEEecchhH
Q 036520 90 PSENIQYLKIAYDL--------LQHPFKQFV---AQQSVDWIIVDVMSHWAGKIAQEYHVPLLLFSAFSAA 149 (473)
Q Consensus 90 ~~~~~~~~~~~~~~--------~~~~l~~ll---~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~ 149 (473)
..+ ...+...... ....+...+ +..+.|+||.+.. +..+|+++|+|++.+.++.-.
T Consensus 89 ~~~-~~~~~~ll~~~i~~~~~~~~~e~~~~i~~~~~~G~~viVGg~~---~~~~A~~~gl~~v~i~sg~es 155 (176)
T PF06506_consen 89 IPG-LESIEELLGVDIKIYPYDSEEEIEAAIKQAKAEGVDVIVGGGV---VCRLARKLGLPGVLIESGEES 155 (176)
T ss_dssp SCC-HHHHHHHHT-EEEEEEESSHHHHHHHHHHHHHTT--EEEESHH---HHHHHHHTTSEEEESS--HHH
T ss_pred cHH-HHHHHHHhCCceEEEEECCHHHHHHHHHHHHHcCCcEEECCHH---HHHHHHHcCCcEEEEEecHHH
Confidence 111 1222222211 122333333 4468999999963 468899999999988664433
No 487
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=22.10 E-value=4.5e+02 Score=22.70 Aligned_cols=52 Identities=15% Similarity=0.024 Sum_probs=30.2
Q ss_pred eeeccCchhHHHHHhhCCceeccccccccccceeeeeecceEEEEecCCCCCcCHHHHHHHHHHHhc
Q 036520 365 SLFHAGWGSVIETLQFGHSLVVLPLIIDQPLNARLLVDKDLAVQVERKDDGSFTRDGIAKALRLATV 431 (473)
Q Consensus 365 ~ItHGG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~t~~~l~~~i~~ll~ 431 (473)
++..+|++.+. +.+ .....++.+...+..|+.-....+ +.++|.+++++.++
T Consensus 100 V~NN~~yg~~~-----~~~-----~~~~~~d~~~~A~a~G~~~~~~v~-----~~~el~~al~~a~~ 151 (188)
T cd03371 100 VLNNGAHDSVG-----GQP-----TVSFDVSLPAIAKACGYRAVYEVP-----SLEELVAALAKALA 151 (188)
T ss_pred EEeCchhhccC-----CcC-----CCCCCCCHHHHHHHcCCceEEecC-----CHHHHHHHHHHHHh
Confidence 78888887642 111 112235566666666753222222 67888888888775
No 488
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=22.06 E-value=2.4e+02 Score=27.66 Aligned_cols=38 Identities=24% Similarity=0.300 Sum_probs=29.4
Q ss_pred EEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCCcc
Q 036520 7 VVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPKNI 44 (473)
Q Consensus 7 vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~ 44 (473)
+++.-.++.|=-.-++.++..++..|..|.+++.....
T Consensus 85 vLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~ 122 (372)
T cd01121 85 ILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESP 122 (372)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCH
Confidence 34455567788888999999999999999998876543
No 489
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=21.99 E-value=59 Score=32.95 Aligned_cols=34 Identities=21% Similarity=0.316 Sum_probs=27.6
Q ss_pred HHHHHHHhCCCcEEEEcCCcchHHHHHHHcCCCeEEE
Q 036520 107 PFKQFVAQQSVDWIIVDVMSHWAGKIAQEYHVPLLLF 143 (473)
Q Consensus 107 ~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~ 143 (473)
++.+++++.+||++|.... +..+|+++|||++.+
T Consensus 395 el~~~i~~~~pDl~ig~~~---~~~~a~k~gIP~~~~ 428 (466)
T TIGR01282 395 EFEEFVEKLKPDLVGSGIK---EKYVFQKMGVPFRQM 428 (466)
T ss_pred HHHHHHHHhCCCEEEecCC---ccceeeecCCCcccc
Confidence 5677788889999999864 356899999999655
No 490
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=21.93 E-value=1.3e+02 Score=26.65 Aligned_cols=33 Identities=21% Similarity=0.193 Sum_probs=24.7
Q ss_pred CCcEEE-EcCCc-chHHHHHHHcCCCeEEEecchh
Q 036520 116 SVDWII-VDVMS-HWAGKIAQEYHVPLLLFSAFSA 148 (473)
Q Consensus 116 ~pD~vI-~D~~~-~~~~~~A~~lgiP~v~~~~~~~ 148 (473)
.||+|| .|+.. .-|..=|.++|||.|.+.-+..
T Consensus 114 ~Pdliiv~dp~~~~~AI~EA~kl~IP~IaivDTn~ 148 (204)
T PRK04020 114 EPDVVVVTDPRGDAQAVKEAIEVGIPVVALCDTDN 148 (204)
T ss_pred CCCEEEEECCcccHHHHHHHHHhCCCEEEEEeCCC
Confidence 788655 67644 5677779999999999876543
No 491
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=21.87 E-value=1.7e+02 Score=30.32 Aligned_cols=27 Identities=7% Similarity=0.044 Sum_probs=21.8
Q ss_pred cceeeeccCc------hhHHHHHhhCCceeccc
Q 036520 362 IGTSLFHAGW------GSVIETLQFGHSLVVLP 388 (473)
Q Consensus 362 ~~~~ItHGG~------~s~~eal~~GvP~l~~P 388 (473)
.+++++|.|- +.+.||.+.++|||++.
T Consensus 65 pgv~~~t~GPG~~N~l~~l~~A~~~~~Pvl~i~ 97 (549)
T PRK06457 65 PSACMGTSGPGSIHLLNGLYDAKMDHAPVIALT 97 (549)
T ss_pred CeEEEeCCCCchhhhHHHHHHHHhcCCCEEEEe
Confidence 3348888884 47889999999999984
No 492
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=21.86 E-value=1.1e+02 Score=30.39 Aligned_cols=34 Identities=12% Similarity=0.265 Sum_probs=26.6
Q ss_pred HHHHHHHhCCCcEEEEcCCcchHHHHHHHcCCCeEEE
Q 036520 107 PFKQFVAQQSVDWIIVDVMSHWAGKIAQEYHVPLLLF 143 (473)
Q Consensus 107 ~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~ 143 (473)
++.+.++..+||++|.... ...+|+++|||++.+
T Consensus 347 e~~~~i~~~~pDl~ig~s~---~~~~a~~~gip~~~~ 380 (410)
T cd01968 347 ELKKLLKEKKADLLVAGGK---ERYLALKLGIPFCDI 380 (410)
T ss_pred HHHHHHhhcCCCEEEECCc---chhhHHhcCCCEEEc
Confidence 4557777789999999943 357899999999854
No 493
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=21.70 E-value=1.7e+02 Score=26.61 Aligned_cols=38 Identities=16% Similarity=0.048 Sum_probs=26.7
Q ss_pred hHHHHHHHhCCCcEEEEcC--CcchHHHHHHHcCCCeEEE
Q 036520 106 HPFKQFVAQQSVDWIIVDV--MSHWAGKIAQEYHVPLLLF 143 (473)
Q Consensus 106 ~~l~~ll~~~~pD~vI~D~--~~~~~~~~A~~lgiP~v~~ 143 (473)
+.+.+.+++.++|+|++=. -...|..+|..+|+|.+..
T Consensus 101 ~~la~~~~~~~~D~Vvtv~~~GI~lA~~lA~~L~~p~vi~ 140 (238)
T PRK08558 101 PVVAERFMGLRVDVVLTAATDGIPLAVAIASYFGADLVYA 140 (238)
T ss_pred HHHHHHccCCCCCEEEEECcccHHHHHHHHHHHCcCEEEE
Confidence 3344444556889988542 3457778999999998875
No 494
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=21.69 E-value=1.4e+02 Score=30.16 Aligned_cols=34 Identities=15% Similarity=0.307 Sum_probs=26.0
Q ss_pred HHHHHHHh--CCCcEEEEcCCcchHHHHHHHcCCCeEEE
Q 036520 107 PFKQFVAQ--QSVDWIIVDVMSHWAGKIAQEYHVPLLLF 143 (473)
Q Consensus 107 ~l~~ll~~--~~pD~vI~D~~~~~~~~~A~~lgiP~v~~ 143 (473)
++.+.+++ .+||++|... .+..+|+++|||++.+
T Consensus 377 ~l~~~i~~~~~~~Dliig~s---~~~~~a~k~gip~~~~ 412 (461)
T TIGR02931 377 ELESRIKNQGLELDLILGHS---KGRFISIDYNIPMVRV 412 (461)
T ss_pred HHHHHHHhcCCCCCEEEECc---chHHHHHHcCCCEEEe
Confidence 34555664 5799999985 4578899999999876
No 495
>PLN02496 probable phosphopantothenoylcysteine decarboxylase
Probab=21.64 E-value=1.1e+02 Score=27.20 Aligned_cols=44 Identities=11% Similarity=0.150 Sum_probs=32.1
Q ss_pred ccEEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCCccccCCC
Q 036520 4 KLHVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPKNIQRLPK 49 (473)
Q Consensus 4 ~~~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~ 49 (473)
++||++...++ --.+-...|.+.|. +||+|.++.++...+++..
T Consensus 19 ~k~IllgVtGS-IAAyk~~~lvr~L~-~g~~V~VvmT~~A~~FI~p 62 (209)
T PLN02496 19 KPRILLAASGS-VAAIKFGNLCHCFS-EWAEVRAVVTKASLHFIDR 62 (209)
T ss_pred CCEEEEEEeCH-HHHHHHHHHHHHhc-CCCeEEEEEChhHhhhcCH
Confidence 34777766554 34555677999997 5999999998887776653
No 496
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=21.56 E-value=1.5e+02 Score=24.37 Aligned_cols=36 Identities=14% Similarity=0.238 Sum_probs=25.2
Q ss_pred cEEEEecCCCc--cChHHHHHHHHH-HHhCCCeEEEEeC
Q 036520 5 LHVVMLPWSAF--GHLMPFFQLSIA-LAKSGVKVSFIST 40 (473)
Q Consensus 5 ~~vl~~~~~~~--gH~~p~l~la~~-L~~~Gh~Vt~~~~ 40 (473)
|||+++..... |+..-+...+.+ |.++|++|.++--
T Consensus 1 Mkilii~gS~r~~~~t~~l~~~~~~~l~~~g~e~~~i~l 39 (152)
T PF03358_consen 1 MKILIINGSPRKNSNTRKLAEAVAEQLEEAGAEVEVIDL 39 (152)
T ss_dssp -EEEEEESSSSTTSHHHHHHHHHHHHHHHTTEEEEEEEC
T ss_pred CEEEEEECcCCCCCHHHHHHHHHHHHHHHcCCEEEEEec
Confidence 78988877654 888877766444 4445999988863
No 497
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=21.55 E-value=1.8e+02 Score=30.17 Aligned_cols=26 Identities=15% Similarity=0.234 Sum_probs=21.4
Q ss_pred ceeeeccCc------hhHHHHHhhCCceeccc
Q 036520 363 GTSLFHAGW------GSVIETLQFGHSLVVLP 388 (473)
Q Consensus 363 ~~~ItHGG~------~s~~eal~~GvP~l~~P 388 (473)
+++++|.|- +.+.||...++|||++.
T Consensus 65 gv~~~t~GpG~~n~~~~l~~A~~~~~Pvl~i~ 96 (548)
T PRK08978 65 GVCIATSGPGATNLITGLADALLDSVPVVAIT 96 (548)
T ss_pred EEEEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 348888874 47889999999999995
No 498
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=21.53 E-value=1.4e+02 Score=30.12 Aligned_cols=34 Identities=15% Similarity=0.255 Sum_probs=25.9
Q ss_pred HHHHHHHh--CCCcEEEEcCCcchHHHHHHHcCCCeEEE
Q 036520 107 PFKQFVAQ--QSVDWIIVDVMSHWAGKIAQEYHVPLLLF 143 (473)
Q Consensus 107 ~l~~ll~~--~~pD~vI~D~~~~~~~~~A~~lgiP~v~~ 143 (473)
++.+.+++ .+||++|... .+..+|+++|||++.+
T Consensus 370 e~~~~i~~~~~~~dliig~s---~~~~~A~~~gip~~~~ 405 (454)
T cd01973 370 ELEKRIKNKGLELDLILGHS---KGRYIAIDNNIPMVRV 405 (454)
T ss_pred HHHHHHHhcCCCCCEEEECC---ccHHHHHHcCCCEEEe
Confidence 34556665 4699999885 4578899999999876
No 499
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=21.41 E-value=7.3e+02 Score=27.82 Aligned_cols=102 Identities=17% Similarity=0.148 Sum_probs=58.3
Q ss_pred cccch---HHHhhCCCcceeee---ccCch-hHHHHHhhCCc---eeccccccccccceeeeeecc-eEEEEecCCCCCc
Q 036520 349 GWAPQ---LEILAHPSIGTSLF---HAGWG-SVIETLQFGHS---LVVLPLIIDQPLNARLLVDKD-LAVQVERKDDGSF 417 (473)
Q Consensus 349 ~~~pq---~~ll~~~~~~~~It---HGG~~-s~~eal~~GvP---~l~~P~~~DQ~~na~~v~~~G-~G~~l~~~~~~~~ 417 (473)
..+|+ .+++..+++ ++. .-|+| ...|+++++.. +++++-++ ..|.. +| -|+.+.+ .
T Consensus 446 ~~l~~eeL~AlY~~ADV--~lvTslrDGmNLva~Eyva~~~~~~GvLILSEfa---Gaa~~---L~~~AllVNP-----~ 512 (934)
T PLN03064 446 RSLDFHALCALYAVTDV--ALVTSLRDGMNLVSYEFVACQDSKKGVLILSEFA---GAAQS---LGAGAILVNP-----W 512 (934)
T ss_pred cCCCHHHHHHHHHhCCE--EEeCccccccCchHHHHHHhhcCCCCCeEEeCCC---chHHH---hCCceEEECC-----C
Confidence 33565 466677887 554 34776 55699999652 22223221 12221 12 3555655 4
Q ss_pred CHHHHHHHHHHHhc-CcchHHHHHHHHHHHHHhccCCCcHHHHHHHHHHH
Q 036520 418 TRDGIAKALRLATV-SEEGEKLRVRAREAANTFNDKKLHDDYSVRFVEYL 466 (473)
Q Consensus 418 t~~~l~~~i~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 466 (473)
+.++++++|.++|+ . .++-+++.+++.+.+... ....-++.+++.+
T Consensus 513 D~~~vA~AI~~AL~M~--~~Er~~r~~~~~~~V~~~-d~~~Wa~~fl~~L 559 (934)
T PLN03064 513 NITEVAASIAQALNMP--EEEREKRHRHNFMHVTTH-TAQEWAETFVSEL 559 (934)
T ss_pred CHHHHHHHHHHHHhCC--HHHHHHHHHHHHhhcccC-CHHHHHHHHHHHH
Confidence 88999999999887 3 345566666666666533 3334344444444
No 500
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=21.26 E-value=1.4e+02 Score=24.44 Aligned_cols=39 Identities=15% Similarity=0.058 Sum_probs=34.3
Q ss_pred cEEEEecCCCccChHHHHHHHHHHHhCCCeEEEEeCCCc
Q 036520 5 LHVVMLPWSAFGHLMPFFQLSIALAKSGVKVSFISTPKN 43 (473)
Q Consensus 5 ~~vl~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~ 43 (473)
.+|++....+-+|-.----++..|...|++|..+.....
T Consensus 2 ~~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~v~ 40 (134)
T TIGR01501 2 KTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVLSP 40 (134)
T ss_pred CeEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCCCC
Confidence 479999999999999999999999999999999876544
Done!